BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038490
         (344 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225461712|ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Vitis vinifera]
          Length = 464

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/343 (58%), Positives = 263/343 (76%), Gaps = 8/343 (2%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRA 60
           KP S  RL+ L RLQ DPKLALQLF+NPNP+P        KPFRY  L YDLIITKLGR+
Sbjct: 5   KPISPFRLSSLLRLQNDPKLALQLFQNPNPDP--------KPFRYTHLSYDLIITKLGRS 56

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           +MF EM+QIL QL+ +TR  PKEIIFCNVI FYGRARL +RA+Q F+ +  F  Q TVK 
Sbjct: 57  RMFHEMEQILSQLRRETRFSPKEIIFCNVISFYGRARLPDRAIQTFESIPEFRCQRTVKS 116

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
            N+LLN  L C + ++   +   ++K+ +PD C+YN+LI+ C  S  L DAW VFDEM++
Sbjct: 117 LNSLLNALLKCKEFEKFDGILSGIDKFATPDVCTYNVLINACCSSGSLGDAWNVFDEMLR 176

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           + + P +VTFGTLI GLC + R+DEA +LKED+++V+NVKP+  V+ASL+KGLC V ELS
Sbjct: 177 KHVCPNVVTFGTLISGLCGDSRLDEAFRLKEDMVKVFNVKPNAFVYASLMKGLCRVNELS 236

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           LA  +K+EMV +K+ +D+GIYS+LI+ALFK GRK+E   +L+EM+E GCKP++VTYNA+I
Sbjct: 237 LAFELKKEMVANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMI 296

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           SGFC E+DFEAA+ +L+EM  KGCK + ISYNVI+ GLCK+GK
Sbjct: 297 SGFCNEKDFEAAYGVLEEMVAKGCKPDVISYNVIISGLCKEGK 339



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 134/293 (45%), Gaps = 19/293 (6%)

Query: 57  LGRA-KMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNV 114
           LG A  +FDEM +     KH   + P  + F  +I G  G +RL E      D +  FNV
Sbjct: 164 LGDAWNVFDEMLR-----KH---VCPNVVTFGTLISGLCGDSRLDEAFRLKEDMVKVFNV 215

Query: 115 QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP----DACSYNILIHGCVVSRRLED 170
           +     + +L+  K  C +++ +   F++ ++ V+     D+  Y+ LI       R ++
Sbjct: 216 KPNAFVYASLM--KGLC-RVNELSLAFELKKEMVANKLRLDSGIYSTLIAALFKVGRKDE 272

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
            + V +EM +   +P  VT+  +I G C E   + A  + E+ M     KPD   +  +I
Sbjct: 273 VFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEE-MVAKGCKPDVISYNVII 331

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
            GLC  G+   A  + E+M R     D G Y  L   L +  + NE   IL EM  +G  
Sbjct: 332 SGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAFILDEMVFKGYA 391

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           P S +    +   C+E + E    +L+ +  KG   +  ++++ +  +CK  K
Sbjct: 392 PKSASKTKFVEALCQEGNLELLCKVLNSLV-KGNVIDGDAWSLAVSKVCKKEK 443


>gi|224117008|ref|XP_002317451.1| predicted protein [Populus trichocarpa]
 gi|222860516|gb|EEE98063.1| predicted protein [Populus trichocarpa]
          Length = 461

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/343 (59%), Positives = 258/343 (75%), Gaps = 6/343 (1%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRA 60
           +P +  RLA L RLQKDPKLALQLFKNPNP        P KPFRY+LL YDLIITKLGRA
Sbjct: 5   RPITPFRLASLLRLQKDPKLALQLFKNPNPK------TPSKPFRYSLLSYDLIITKLGRA 58

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           KMF+EMQ+IL QLK +T   PKE +FC++I FYGRARL E AL++  E+ SF VQ TVK 
Sbjct: 59  KMFNEMQEILAQLKEETLFTPKEALFCDIINFYGRARLPENALKLLVELPSFRVQRTVKS 118

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           +N+LL+  L C   D+M+ELF  +EK    DAC+YN+LI G   S RL+DA KVFDEM  
Sbjct: 119 YNSLLSVFLMCKDFDKMRELFVGIEKLGKADACTYNLLIRGFCASGRLDDASKVFDEMTN 178

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           R + P ++TFG LIYG CL LR+ EA KLK D+++VY V P+  ++ASLIKG+C  GELS
Sbjct: 179 RGVSPNVITFGNLIYGFCLHLRLKEAFKLKTDMVKVYRVYPNAYIYASLIKGVCKNGELS 238

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           LA  +K+EM+R+KIE+D  IYS+LIS LFKAGRK E   + ++MKERG KP++VTYN +I
Sbjct: 239 LAFRLKKEMIRNKIELDPAIYSTLISGLFKAGRKEEALGVWEDMKERGYKPDTVTYNVII 298

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + FCK++DFEAA+ +LDEM +KGCK + ISYNVIL  L ++GK
Sbjct: 299 NLFCKDKDFEAAYRLLDEMVEKGCKPDVISYNVILRELFEEGK 341


>gi|147840993|emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera]
          Length = 418

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/343 (58%), Positives = 264/343 (76%), Gaps = 8/343 (2%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRA 60
           KP S  RL+ L RLQ  PKLALQLF+NPNP+P        KPFRY  L YDLIITKLGR+
Sbjct: 5   KPISPFRLSSLLRLQNGPKLALQLFQNPNPDP--------KPFRYTHLSYDLIITKLGRS 56

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           +MF EM+QIL QL+ +TR  PKEIIFCNVI FYGRARL +RA+Q F+ +  F  Q TVK 
Sbjct: 57  RMFHEMEQILSQLRRETRFSPKEIIFCNVISFYGRARLPDRAIQTFESIPEFRCQRTVKS 116

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
            N+LLN  L C + ++   +   ++K+ +P+ C+YNILI+ C +S RL DAW VFDEM++
Sbjct: 117 LNSLLNALLNCKEFEKFDGILSGIDKFATPNVCTYNILINACCLSGRLGDAWNVFDEMLR 176

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           + + P +VTFGTLI GLC + R+DEA +LKED+++V+NVKP+  V+ASL+KGLC V ELS
Sbjct: 177 KHVCPNVVTFGTLISGLCRDSRLDEASRLKEDMVKVFNVKPNAFVYASLMKGLCRVNELS 236

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           LA  +K+EMV +K+ +D+GIYS+LI+ALFK GRK+E   +L+EM+E GCKP++VTYNA+I
Sbjct: 237 LAFELKKEMVANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMI 296

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           SGFC E+DFEAA+ +L+EM  KGCK + ISYNVI+ GLCK+GK
Sbjct: 297 SGFCNEKDFEAAYGVLEEMVVKGCKPDVISYNVIISGLCKEGK 339


>gi|449456681|ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Cucumis sativus]
          Length = 527

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/343 (55%), Positives = 252/343 (73%), Gaps = 4/343 (1%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRA 60
           KP S  RL+ L RLQKDP LALQLF NPNP    + + P KPFRY+LL YDLII+KLGRA
Sbjct: 73  KPISPFRLSSLLRLQKDPTLALQLFLNPNP----SSSEPPKPFRYSLLSYDLIISKLGRA 128

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           KMFDEM++IL QLK +TR  P E+IFCNVI FYGRA L +RA Q+F+ + SF  + TVK 
Sbjct: 129 KMFDEMEEILQQLKQETRFAPHEVIFCNVIAFYGRAHLPDRAFQVFERIPSFRCKRTVKS 188

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
            N+LL   L   +L++M ++F  +  Y SPDAC++NILIH   +   L+  W VFDEM K
Sbjct: 189 VNSLLAALLKNRQLEKMTQVFVDISNYGSPDACTFNILIHAACLCGDLDAVWGVFDEMQK 248

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           R ++P +VTFGTLIYGL L  ++ EAL+LKED+++VY +KP+  ++ +LIKG C VGEL+
Sbjct: 249 RGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKGFCGVGELN 308

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  +KEEMV   +++ + +YS+LISALFK GRK E   IL+EM E GCKP++VTYNA+I
Sbjct: 309 FAFKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDILREMGENGCKPDTVTYNAII 368

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G CKE D E+A  ++DEM +KGCK +  S+N I+G LCK+GK
Sbjct: 369 NGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGK 411



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 127/271 (46%), Gaps = 18/271 (6%)

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS-FNVQMTVKF 120
           +FDEMQ+          + P  + F  +I        L+ AL++ ++M   + ++     
Sbjct: 242 VFDEMQK--------RGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASI 293

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPD----ACSYNILIHGCVVSRRLEDAWKVFD 176
           + TL+  K  CG +  +   F++ E+ V+ +    +  Y+ LI       R E+   +  
Sbjct: 294 YTTLI--KGFCG-VGELNFAFKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDILR 350

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
           EM +   +P  VT+  +I G C E  ++ A ++ ++++     KPD   F ++I  LC  
Sbjct: 351 EMGENGCKPDTVTYNAIINGHCKENDLESAHRVMDEMVE-KGCKPDVFSFNTIIGWLCKE 409

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           G+L  A+ + E+M R     D   Y  +   L +  +  E  +IL EM  +G  P + + 
Sbjct: 410 GKLDKAMDLLEDMPRRGCPPDVLSYRIIFDGLCEMMQLKEATSILDEMIFKGYVPRNESI 469

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           N L+   C+E + E  + IL+ +G +G + N
Sbjct: 470 NKLVDRLCQECNMELLWMILNSLG-RGNRMN 499


>gi|255576901|ref|XP_002529336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531207|gb|EEF33053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 610

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/343 (58%), Positives = 255/343 (74%), Gaps = 6/343 (1%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRA 60
           K  SS RLA L RLQ+DPKLAL LF++PN NPN       KPFRY+LL YDL+ITKLGRA
Sbjct: 7   KRISSFRLASLLRLQEDPKLALHLFQHPNSNPNP------KPFRYSLLCYDLMITKLGRA 60

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           KMF EM+QIL Q K  TR+V KE +FCN+I FYGRA L + AL+MFDEM  +  Q T+K 
Sbjct: 61  KMFHEMEQILLQFKTQTRLVAKEPLFCNIITFYGRAGLPQNALKMFDEMPLYRCQRTIKS 120

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           +NTLLN  + C + D M+E F  ++++V PD C++NI+I G     R++DA KV DEM  
Sbjct: 121 YNTLLNVLMICKEFDVMREHFVNIKRHVKPDGCTFNIMIRGLCSDGRVDDALKVLDEMKN 180

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           R L P  VTFGTLIYGLCL L++ EA KLK+ ++ V+ + P+  V+A+LIKGLCAVGELS
Sbjct: 181 RDLVPNQVTFGTLIYGLCLNLKLKEAFKLKDYMVNVHGLCPNEYVYATLIKGLCAVGELS 240

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            AL +KEEM RD +++D+ IYS+LIS LFK GRK+E   +L EM+ +GCK ++VTYN +I
Sbjct: 241 FALRLKEEMERDGVKVDSAIYSTLISGLFKVGRKDEVFGVLMEMELKGCKADTVTYNVMI 300

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +GFCK++DFE A+ ILDEM +  CK + ISYNVILG LCKDGK
Sbjct: 301 NGFCKDKDFETAYKILDEMMENRCKPDVISYNVILGELCKDGK 343


>gi|297847728|ref|XP_002891745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337587|gb|EFH68004.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 472

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/338 (57%), Positives = 252/338 (74%), Gaps = 4/338 (1%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRA 60
           K  SS RLA L R + DP  A++LF+NP+P       +P +PFRY+LL YD+IITKLG +
Sbjct: 5   KSVSSFRLASLLRRENDPSAAIKLFRNPDPE----STNPKRPFRYSLLCYDIIITKLGGS 60

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           KMFDE+ Q+L QLK DTRIVP EI+FCNVI F+GR RL  RAL MFDEM  +  Q TVK 
Sbjct: 61  KMFDELDQVLLQLKTDTRIVPTEILFCNVINFFGRGRLPSRALHMFDEMPQYRCQRTVKS 120

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
            N+LLN  L CG+ ++MKE    ++++  PDAC+YNILIHGC      +DA K+FDEMVK
Sbjct: 121 LNSLLNTLLKCGEFEKMKERLSSIDEFGKPDACTYNILIHGCSQRGCFDDALKLFDEMVK 180

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           ++++PT VTFGTLI+GLC  LRV EALK+K+D+++VY V+P   ++ASL+K LC +GELS
Sbjct: 181 KKVKPTGVTFGTLIHGLCKNLRVKEALKMKQDMLKVYGVRPTVHIYASLVKALCQIGELS 240

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  +K+E    KI++D+ IYS+LIS+L KAGR NE   IL+EM E+GCKP++VTYN LI
Sbjct: 241 FAFKLKDEAYEGKIKVDSAIYSTLISSLIKAGRSNEVSRILEEMSEKGCKPDTVTYNVLI 300

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           +GFC E D E+A+ +LDEM +KG K + ISYN+ILG L
Sbjct: 301 NGFCVENDSESAYRVLDEMVEKGLKPDVISYNMILGVL 338



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/296 (20%), Positives = 130/296 (43%), Gaps = 8/296 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+++I    +   FD+  ++  ++    ++ P  + F  +I    +   ++ AL+M  +M
Sbjct: 155 YNILIHGCSQRGCFDDALKLFDEMVK-KKVKPTGVTFGTLIHGLCKNLRVKEALKMKQDM 213

Query: 110 -SSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNILIHGCVVS 165
              + V+ TV  + +L+      G+L    ++K+  +  E  +  D+  Y+ LI   + +
Sbjct: 214 LKVYGVRPTVHIYASLVKALCQIGELSFAFKLKD--EAYEGKIKVDSAIYSTLISSLIKA 271

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            R  +  ++ +EM ++  +P  VT+  LI G C+E   + A ++ ++++    +KPD   
Sbjct: 272 GRSNEVSRILEEMSEKGCKPDTVTYNVLINGFCVENDSESAYRVLDEMVE-KGLKPDVIS 330

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           +  ++  L  + +   A  + E+M R     D   Y  +   L +  +  E  AIL EM 
Sbjct: 331 YNMILGVLFRIQKWEEATYLFEDMPRRGCSPDTLSYRIVFDGLCEGLQFEEAAAILDEML 390

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            +G KP        +   C+    E    ++  M         +   +I   +CK+
Sbjct: 391 FKGYKPRRDRLERFLQKLCESGKLEILSKVISSMHRGNADDAKVWSVMIPTTMCKE 446



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 11/167 (6%)

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEA----LKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           KR  + +L+ +  +I  L      DE     L+LK D      + P   +F ++I     
Sbjct: 40  KRPFRYSLLCYDIIITKLGGSKMFDELDQVLLQLKTDT----RIVPTEILFCNVI-NFFG 94

Query: 236 VGEL-SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
            G L S AL + +EM + + +      +SL++ L K G   +    L  + E G KP++ 
Sbjct: 95  RGRLPSRALHMFDEMPQYRCQRTVKSLNSLLNTLLKCGEFEKMKERLSSIDEFG-KPDAC 153

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           TYN LI G  +   F+ A  + DEM  K  K   +++  ++ GLCK+
Sbjct: 154 TYNILIHGCSQRGCFDDALKLFDEMVKKKVKPTGVTFGTLIHGLCKN 200


>gi|15219274|ref|NP_175740.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75192173|sp|Q9MAG8.1|PPR79_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g53330
 gi|7769859|gb|AAF69537.1|AC008007_12 F12M16.23 [Arabidopsis thaliana]
 gi|332194805|gb|AEE32926.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 471

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/336 (57%), Positives = 250/336 (74%), Gaps = 4/336 (1%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRA 60
           K  SS RLA L R + DP  A++LF+NP+P       +P +PFRY+LL YD+IITKLG +
Sbjct: 5   KSVSSFRLASLLRRENDPSAAMKLFRNPDPE----STNPKRPFRYSLLCYDIIITKLGGS 60

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           KMFDE+ Q+L  LK DTRIVP EIIFCNVI F+GR +L  RAL MFDEM  +  Q TVK 
Sbjct: 61  KMFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQRTVKS 120

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
            N+LL+  L CG+L++MKE    ++++  PDAC+YNILIHGC  S   +DA K+FDEMVK
Sbjct: 121 LNSLLSALLKCGELEKMKERLSSIDEFGKPDACTYNILIHGCSQSGCFDDALKLFDEMVK 180

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           ++++PT VTFGTLI+GLC + RV EALK+K D+++VY V+P   ++ASLIK LC +GELS
Sbjct: 181 KKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQIGELS 240

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  +K+E    KI++DA IYS+LIS+L KAGR NE   IL+EM E+GCKP++VTYN LI
Sbjct: 241 FAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLI 300

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
           +GFC E D E+A  +LDEM +KG K + ISYN+ILG
Sbjct: 301 NGFCVENDSESANRVLDEMVEKGLKPDVISYNMILG 336



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 11/169 (6%)

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEA----LKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           KR  + +L+ +  +I  L      DE     L LK D      + P   +F ++I     
Sbjct: 40  KRPFRYSLLCYDIIITKLGGSKMFDELDQVLLHLKTDT----RIVPTEIIFCNVI-NFFG 94

Query: 236 VGEL-SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
            G+L S AL + +EM + + +      +SL+SAL K G   +    L  + E G KP++ 
Sbjct: 95  RGKLPSRALHMFDEMPQYRCQRTVKSLNSLLSALLKCGELEKMKERLSSIDEFG-KPDAC 153

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           TYN LI G  +   F+ A  + DEM  K  K   +++  ++ GLCKD +
Sbjct: 154 TYNILIHGCSQSGCFDDALKLFDEMVKKKVKPTGVTFGTLIHGLCKDSR 202


>gi|449532274|ref|XP_004173107.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Cucumis sativus]
          Length = 394

 Score =  315 bits (806), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 147/278 (52%), Positives = 202/278 (72%)

Query: 66  MQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125
           M++IL QLK +TR  P E+IFCNVI FYGRA L +RA Q+F+ + SF  + TVK  N+LL
Sbjct: 1   MEEILQQLKQETRFAPHEVIFCNVIAFYGRAHLPDRAFQVFERIPSFRCKRTVKSVNSLL 60

Query: 126 NPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
              L   +L++M ++F  +  Y SPDAC++NILIH   +   L+  W VFDEM KR ++P
Sbjct: 61  AALLKNRQLEKMTQVFVDISNYGSPDACTFNILIHAACLCGDLDAVWGVFDEMQKRGVKP 120

Query: 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
            +VTFGTLIYGL L  ++ EAL+LKED+++VY +KP+  ++ +LIKG C VGEL+ A  +
Sbjct: 121 NVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKGFCGVGELNFAFKL 180

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
           KEEMV   +++ + +YS+LISALFK GRK E   IL+EM E GCKP++VTYNA+I+G CK
Sbjct: 181 KEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDILREMGENGCKPDTVTYNAIINGHCK 240

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           E D E+A  ++DEM +KGCK +  S+N I+G LCK+GK
Sbjct: 241 ENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGK 278



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 134/297 (45%), Gaps = 43/297 (14%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-G 91
           ++ +   +KP   N++ +  +I  L       E  ++   +     I P   I+  +I G
Sbjct: 111 DEMQKRGVKP---NVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKG 167

Query: 92  FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSP 150
           F G   L   A ++ +EM + NV++    ++TL++     G+ + + ++ + M E    P
Sbjct: 168 FCGVGEL-NFAFKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDILREMGENGCKP 226

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           D  +YN +I+G      LE A +V DEMV++  +P + +F T+I  LC E ++D+A+ L 
Sbjct: 227 DTVTYNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLL 286

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
           ED+ R     PD   +  +  GLC + +L                               
Sbjct: 287 EDMPR-RGCPPDVLSYRIIFDGLCEMMQLK------------------------------ 315

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
                E  +IL EM  +G  P + + N L+   C+E + E  + IL+ +G +G + N
Sbjct: 316 -----EATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMILNSLG-RGNRMN 366


>gi|224161575|ref|XP_002338346.1| predicted protein [Populus trichocarpa]
 gi|222871947|gb|EEF09078.1| predicted protein [Populus trichocarpa]
          Length = 230

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 138/232 (59%), Positives = 169/232 (72%), Gaps = 6/232 (2%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRA 60
           +P +  RLA L RLQKDPKLALQLFKNPNP        P KPFRY+LL YDLIITKLGRA
Sbjct: 5   RPITPFRLASLLRLQKDPKLALQLFKNPNPK------TPSKPFRYSLLSYDLIITKLGRA 58

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           KMF+EMQ+IL QLK +T   PKE +FC++I FYGRARL E AL++  E+ SF VQ TVK 
Sbjct: 59  KMFNEMQEILAQLKEETLFTPKEALFCDIINFYGRARLPENALKLLVELPSFRVQRTVKS 118

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           +N+LL+  L C   D+M+ELF  +EK    DAC+YN+LI G   S RL+DA KVFDEM  
Sbjct: 119 YNSLLSVFLMCKDFDKMRELFVGIEKLGKADACTYNLLIRGFCASGRLDDASKVFDEMTN 178

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
           R + P ++TFG LIYG CL LR+ EA KLK D+++VY V P+  ++ASLIKG
Sbjct: 179 RGVSPNVITFGNLIYGFCLHLRLKEAFKLKTDMVKVYRVYPNAYIYASLIKG 230



 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%)

Query: 208 KLKEDIMRVYNVKPDGQVFASLIK--GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           +LKE+ +      P   +F  +I   G   + E +L L V  E+   +++     Y+SL+
Sbjct: 70  QLKEETL----FTPKEALFCDIINFYGRARLPENALKLLV--ELPSFRVQRTVKSYNSLL 123

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
           S        ++   +   +++ G K ++ TYN LI GFC     + A  + DEM ++G  
Sbjct: 124 SVFLMCKDFDKMRELFVGIEKLG-KADACTYNLLIRGFCASGRLDDASKVFDEMTNRGVS 182

Query: 326 ANPISYNVILGGLC 339
            N I++  ++ G C
Sbjct: 183 PNVITFGNLIYGFC 196


>gi|356514549|ref|XP_003525968.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Glycine max]
          Length = 465

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 158/348 (45%), Positives = 217/348 (62%), Gaps = 10/348 (2%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRA 60
           KP S  RL  L R  KDP LALQLF NPN           +P R++L  YDL+ITKL RA
Sbjct: 5   KPISPFRLTSLLRSTKDPSLALQLFLNPN----PNPNPNPRPLRHSLRSYDLLITKLARA 60

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           KMF +M+QILHQL+  T+    E + C VI  Y RARL  RAL+ F  + SF    T+K 
Sbjct: 61  KMFPQMEQILHQLQTLTQFPVPEPLLCRVIISYARARLPSRALRTFLSIPSFRCTPTLKS 120

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVS--PDACSYNILIHGCVVSRR-LEDAWKVFDE 177
           FN+LL+  L C     +  L   +  + +  PDAC+YNILI  C ++   L  A K+FDE
Sbjct: 121 FNSLLHALLLCRDFPSLPRLLPRLRHFSASGPDACTYNILIRACSLNNNDLAHARKLFDE 180

Query: 178 MVKRRLQPTLVTFGTLIYGLCLE--LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           M+   ++PT VTFGTLI  LC +  L + EA  +KED+ RV+ +KP+  V+ +LIK +C 
Sbjct: 181 MLTLGVRPTQVTFGTLINMLCKDPHLNLREAFSVKEDMERVFKLKPNVFVYTNLIKAVCE 240

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
           VG+   A  +K+EMVR+ + +D  +Y++L SA+FKAG+K     IL+EMK  G KP++VT
Sbjct: 241 VGDFDCAFRLKDEMVRNNLRLDVVVYNTLTSAVFKAGKKGLGYRILEEMKSGGVKPDAVT 300

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            N LI  FC+E +   A+ +LD+ G +G K +   YNV++G LCK+GK
Sbjct: 301 CNVLIGEFCREGNLVEAYRVLDD-GVEGVKPDVFGYNVVIGWLCKEGK 347



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 123/289 (42%), Gaps = 19/289 (6%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL--ERALQMFDEMSS-FNVQMT 117
           K+FDEM  +         + P ++ F  +I    +   L    A  + ++M   F ++  
Sbjct: 176 KLFDEMLTL--------GVRPTQVTFGTLINMLCKDPHLNLREAFSVKEDMERVFKLKPN 227

Query: 118 VKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKV 174
           V  +  L+      G  D   R+K+  +++   +  D   YN L      + +    +++
Sbjct: 228 VFVYTNLIKAVCEVGDFDCAFRLKD--EMVRNNLRLDVVVYNTLTSAVFKAGKKGLGYRI 285

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
            +EM    ++P  VT   LI   C E  + EA ++ +D   V  VKPD   +  +I  LC
Sbjct: 286 LEEMKSGGVKPDAVTCNVLIGEFCREGNLVEAYRVLDD--GVEGVKPDVFGYNVVIGWLC 343

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
             G+   A  +  +M R +   D   Y ++   L +  +  E   +L+EM  +G  P S 
Sbjct: 344 KEGKWREADDLFRDMPRRQCVPDVVTYRTVFDGLCQWMQFEEAGLVLEEMVFKGYVPCSS 403

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + N  +   C+E DFE    +L  +G  G   N   +  ++  +CK  K
Sbjct: 404 SLNEFVGRLCQEGDFELLGKVLSGLGG-GFFCNENVWKTVVSLVCKSEK 451



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 12/247 (4%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           ++ P   ++ N+I         + A ++ DEM   N+++ V  +NTL +     GK    
Sbjct: 223 KLKPNVFVYTNLIKAVCEVGDFDCAFRLKDEMVRNNLRLDVVVYNTLTSAVFKAGKKGLG 282

Query: 138 KELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
             + + M+   V PDA + N+LI        L +A++V D+ V+  ++P +  +  +I  
Sbjct: 283 YRILEEMKSGGVKPDAVTCNVLIGEFCREGNLVEAYRVLDDGVEG-VKPDVFGYNVVIGW 341

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC E +  EA  L  D+ R   V PD   + ++  GLC   +   A  V EEMV    + 
Sbjct: 342 LCKEGKWREADDLFRDMPRRQCV-PDVVTYRTVFDGLCQWMQFEEAGLVLEEMV---FKG 397

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERG----CKPNSVTYNALISGFCKEEDFEAA 312
                SSL   + +  ++ +F  + K +   G    C  N   +  ++S  CK E    A
Sbjct: 398 YVPCSSSLNEFVGRLCQEGDFELLGKVLSGLGGGFFCNEN--VWKTVVSLVCKSEKLSGA 455

Query: 313 FTILDEM 319
           F +LD +
Sbjct: 456 FELLDAL 462


>gi|357516331|ref|XP_003628454.1| hypothetical protein MTR_8g058400, partial [Medicago truncatula]
 gi|355522476|gb|AET02930.1| hypothetical protein MTR_8g058400, partial [Medicago truncatula]
          Length = 303

 Score =  266 bits (681), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 137/310 (44%), Positives = 198/310 (63%), Gaps = 11/310 (3%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRA 60
           KP S  RL+ L R QKDP LA Q+F NP  +           +RY++L YDLIITKLGRA
Sbjct: 5   KPISPFRLSSLLRSQKDPSLAFQIFLNPQNH-----------YRYSILSYDLIITKLGRA 53

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           KM  +M+ IL QL +DTR    E + C+VI FY RARL  RA+Q F  + SF    T+K 
Sbjct: 54  KMIPQMELILQQLHNDTRHRVPEPLLCHVISFYARARLPSRAVQTFLSIPSFRCTPTLKS 113

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           FN+LLN  LTC +   +      + ++  P+ C+YNILI  C    R + A ++FDEM +
Sbjct: 114 FNSLLNALLTCRRFQTITHFASRLSEFGPPNTCTYNILIRSCFFQGRTDRALELFDEMRR 173

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
             + P  VTFGTLI+GLC + R+ +A  +K+ +++ + +KP   V+ +L+KG+C +GEL 
Sbjct: 174 TNVCPDQVTFGTLIHGLCKDSRMHQAFGMKKLMIQEFKLKPCVSVYTNLMKGVCEIGELH 233

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  +K+EM R+ + +D  +Y++L++ALFKAGRK E   +L+EMKE G   NSVT N +I
Sbjct: 234 RAFEIKDEMERNGLRLDVVVYNTLVNALFKAGRKEEALRVLEEMKESGYHWNSVTCNVMI 293

Query: 301 SGFCKEEDFE 310
             FC++++F+
Sbjct: 294 GEFCRQKNFQ 303


>gi|357129559|ref|XP_003566429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Brachypodium distachyon]
          Length = 461

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 153/344 (44%), Positives = 219/344 (63%), Gaps = 12/344 (3%)

Query: 4   SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPL-KPFRYNLLHYDLIITKLGRAKM 62
           SS  LA   R + DP  AL+LF NP+       A P+  PFRY+L  YDLII+K+  A++
Sbjct: 7   SSYHLAAALRREPDPAAALRLFLNPS----SAAASPIPTPFRYSLRCYDLIISKVAAARL 62

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
           F  M+ +L  L+  + + P+E + C VI  YGRARL   A + F    +F    T +  N
Sbjct: 63  FPAMESLLSSLRT-SSLSPREPLLCCVISAYGRARLPAAARRAF-AHPAFPAPRTSRALN 120

Query: 123 TLLNPKLTCGKLDRMKELFQI-MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
           TLL+  L C     + ELF +  +  VSPDAC+YNIL+     S  ++ A  +FDEMV+R
Sbjct: 121 TLLHALLVCHT--PLDELFSVCRDADVSPDACTYNILMRAAAASGSVDHARLLFDEMVQR 178

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
           R+ PT+VTFGTL+   C   R+DEA  LKE + R YNV+P+  V+ASL+KGLC  G+   
Sbjct: 179 RIAPTVVTFGTLVAAFCSSGRLDEAFDLKEAMARQYNVRPNAHVYASLMKGLCQSGDADN 238

Query: 242 ALGVKEEMVRD-KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           A+ +KEEM  + ++ +D+ IY++L+ ALF+ GRK E   +L+EMK RG   + V +NA+I
Sbjct: 239 AVRLKEEMAGNAELGLDSAIYATLVRALFRVGRKGEVVGLLEEMKGRGIAVDRVVHNAMI 298

Query: 301 SGFCKEE-DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +GFC++E D +AAF +LD+M   GCKA+ +SYN ++ GLCK G+
Sbjct: 299 AGFCEDEMDLDAAFVVLDDMQKSGCKADTVSYNTLVAGLCKLGR 342



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 103/266 (38%), Gaps = 48/266 (18%)

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS-SFNVQMTVKF 120
           +FDEM Q         RI P  + F  ++  +  +  L+ A  + + M+  +NV+     
Sbjct: 171 LFDEMVQ--------RRIAPTVVTFGTLVAAFCSSGRLDEAFDLKEAMARQYNVRPNAHV 222

Query: 121 FNTLLNPKLTCGKLDRMKELFQIM--EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
           + +L+      G  D    L + M     +  D+  Y  L+       R  +   + +EM
Sbjct: 223 YASLMKGLCQSGDADNAVRLKEEMAGNAELGLDSAIYATLVRALFRVGRKGEVVGLLEEM 282

Query: 179 VKRRLQPTLVTFGTLIYGLCL-ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
             R +    V    +I G C  E+ +D A  + +D M+    K D   + +L+ GLC   
Sbjct: 283 KGRGIAVDRVVHNAMIAGFCEDEMDLDAAFVVLDD-MQKSGCKADTVSYNTLVAGLC--- 338

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
                                           K GR  +   ++++M  RGC P+ VTY 
Sbjct: 339 --------------------------------KLGRWRDANELVEDMPRRGCSPDVVTYR 366

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKG 323
            L  G C   +F  A  +LDEM  KG
Sbjct: 367 MLFDGMCAVGEFHEANQVLDEMVFKG 392



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 1/152 (0%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  ++  L R     E+  +L ++K     V + +    + GF      L+ A  + D+M
Sbjct: 259 YATLVRALFRVGRKGEVVGLLEEMKGRGIAVDRVVHNAMIAGFCEDEMDLDAAFVVLDDM 318

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
                +     +NTL+      G+     EL + M  +  SPD  +Y +L  G       
Sbjct: 319 QKSGCKADTVSYNTLVAGLCKLGRWRDANELVEDMPRRGCSPDVVTYRMLFDGMCAVGEF 378

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
            +A +V DEMV +   P+       + G+ +E
Sbjct: 379 HEANQVLDEMVFKGFAPSKDGVKRFVQGIEIE 410


>gi|297604045|ref|NP_001054898.2| Os05g0207200 [Oryza sativa Japonica Group]
 gi|218196267|gb|EEC78694.1| hypothetical protein OsI_18845 [Oryza sativa Indica Group]
 gi|222630569|gb|EEE62701.1| hypothetical protein OsJ_17504 [Oryza sativa Japonica Group]
 gi|255676129|dbj|BAF16812.2| Os05g0207200 [Oryza sativa Japonica Group]
          Length = 467

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 142/345 (41%), Positives = 212/345 (61%), Gaps = 8/345 (2%)

Query: 3   TSSIRLACLPRLQKDPKLALQLFKNPNPNPN-DTEAHPLKPFRYNLLHYDLIITKLGRAK 61
           +SS  LA   R + DP  AL+LF +P P       + P  PFRY+L  YD+I+ KL  A+
Sbjct: 9   SSSYHLAAALRREPDPAAALRLFLSPTPTAAAGPSSSPAPPFRYSLRCYDIIVCKLAAAR 68

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
           +F  M+ +L +L    R  P+E + C VI  YGRARL   A + F    +F    T +  
Sbjct: 69  LFPAMESVLARLPSSLR--PREPLLCRVISAYGRARLPAAARRAF-AHPAFPAPRTARAL 125

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVV-SRRLEDAWKVFDEMVK 180
           NTLL+  L C +    + L +     + PDAC+YNIL+   V  S  +++A  +FDEM++
Sbjct: 126 NTLLHALLAC-RAPLPELLSECRGSGIHPDACTYNILMRAAVADSGSVDNACLLFDEMLQ 184

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           R + PT+VTFGTL+   C   R++EA K+KE +   YN++P+  V+ASL+K LC  G++ 
Sbjct: 185 RGIAPTVVTFGTLVTAFCEAGRLEEAFKVKEVMSLQYNIRPNAHVYASLMKALCEKGKVD 244

Query: 241 LALGVKEEMVRDKIEM-DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
            A  +KEEMV +   + D+G Y++L  ALF+ G+K E  ++L+EMKE+G K     +N++
Sbjct: 245 DAHRLKEEMVSNSEPLVDSGAYATLARALFRLGKKGEVVSLLEEMKEKGIKVGREVHNSM 304

Query: 300 ISGFCKEE-DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I+GFC++E D +AAF  LD+M   GCK + +SYN ++GGLCK G+
Sbjct: 305 IAGFCEDEGDLDAAFAALDDMQKGGCKPDSVSYNTLVGGLCKMGR 349



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 105/266 (39%), Gaps = 48/266 (18%)

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS-SFNVQMTVKF 120
           +FDEM Q          I P  + F  ++  +  A  LE A ++ + MS  +N++     
Sbjct: 178 LFDEMLQ--------RGIAPTVVTFGTLVTAFCEAGRLEEAFKVKEVMSLQYNIRPNAHV 229

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSP--DACSYNILIHGCVVSRRLEDAWKVFDEM 178
           + +L+      GK+D    L + M     P  D+ +Y  L        +  +   + +EM
Sbjct: 230 YASLMKALCEKGKVDDAHRLKEEMVSNSEPLVDSGAYATLARALFRLGKKGEVVSLLEEM 289

Query: 179 VKRRLQPTLVTFGTLIYGLCL-ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
            ++ ++       ++I G C  E  +D A    +D M+    KPD   + +L+ GLC   
Sbjct: 290 KEKGIKVGREVHNSMIAGFCEDEGDLDAAFAALDD-MQKGGCKPDSVSYNTLVGGLC--- 345

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
                                           K GR  +   ++++M  RGC+P+ VTY 
Sbjct: 346 --------------------------------KMGRWRDASELVEDMPRRGCRPDVVTYR 373

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKG 323
            L  G C    F  A  + +EM  KG
Sbjct: 374 RLFDGICDAGGFSEARRVFNEMVFKG 399


>gi|242049778|ref|XP_002462633.1| hypothetical protein SORBIDRAFT_02g029280 [Sorghum bicolor]
 gi|241926010|gb|EER99154.1| hypothetical protein SORBIDRAFT_02g029280 [Sorghum bicolor]
          Length = 466

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 139/346 (40%), Positives = 210/346 (60%), Gaps = 17/346 (4%)

Query: 4   SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMF 63
           SS  LA   R + DP  AL+LF NP  +          PFRY+L  YDLII +L  A++F
Sbjct: 7   SSYHLAAALRRELDPAAALRLFLNPPASAT--------PFRYSLRCYDLIICRLAAARLF 58

Query: 64  DEMQQILHQLKHDTRIV---PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
             M+ IL +L   +      P+E + C VI  YGRARL   A + F    +F  + T + 
Sbjct: 59  PAMESILSRLASSSSSSGPRPREQLLCRVISAYGRARLPAAARRAFTH-PAFPGRRTARA 117

Query: 121 FNTLLNPKLTCGKLDRMKELFQI-MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
            NTLL+  L C     +++L  +  +  + PDAC+YNIL+     S  ++ A ++FDEM+
Sbjct: 118 LNTLLHALLDCRA--PLRDLLVVCHDAGIPPDACTYNILMRAAAASGSVDHARQLFDEML 175

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           +R + PT+VTFGTL+  LC   ++++A  +KE ++R Y+V P+  V+ SL+KGLC  G++
Sbjct: 176 RRGIAPTVVTFGTLVAALCDAGQLEDAFDMKEVMVRQYDVLPNAYVYTSLMKGLCEKGDV 235

Query: 240 SLALGVKEEMV-RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
             AL +KEEM  +  + +D+ +Y++L+  LF+ GRK     +L+EMK RG   +   YNA
Sbjct: 236 DAALRLKEEMAGKADLVLDSAVYATLVRPLFRVGRKGAVVGLLEEMKGRGIVADRAVYNA 295

Query: 299 LISGFCKEE-DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +++GFCK+E DF  AF +LD+M   GCKA+ +SYN ++ GLCK G+
Sbjct: 296 MLAGFCKDEKDFGGAFAVLDDMRKNGCKADAVSYNTLVAGLCKLGR 341



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 104/287 (36%), Gaps = 73/287 (25%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           HD  I P    +  ++     +  ++ A Q+FDEM    +  TV  F TL+      G+L
Sbjct: 140 HDAGIPPDACTYNILMRAAAASGSVDHARQLFDEMLRRGIAPTVVTFGTLVAALCDAGQL 199

Query: 135 DRMKELFQIMEKY--VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR-------LQP 185
           +   ++ ++M +   V P+A  Y  L+ G      ++ A ++ +EM  +        +  
Sbjct: 200 EDAFDMKEVMVRQYDVLPNAYVYTSLMKGLCEKGDVDAALRLKEEMAGKADLVLDSAVYA 259

Query: 186 TLV-----------------------------TFGTLIYGLCLELRVDEALKLKEDIMRV 216
           TLV                              +  ++ G C + +         D MR 
Sbjct: 260 TLVRPLFRVGRKGAVVGLLEEMKGRGIVADRAVYNAMLAGFCKDEKDFGGAFAVLDDMRK 319

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
              K D   + +L+ GLC                                   K GR  +
Sbjct: 320 NGCKADAVSYNTLVAGLC-----------------------------------KLGRWRD 344

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
              ++++M  RGC P+ VTY  L  G C   +F  A  +LDEM  KG
Sbjct: 345 ASELVEDMPRRGCHPDVVTYRMLFDGMCAAGEFLEANQVLDEMVFKG 391


>gi|194699862|gb|ACF84015.1| unknown [Zea mays]
 gi|414886155|tpg|DAA62169.1| TPA: rf1 protein [Zea mays]
          Length = 456

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 138/343 (40%), Positives = 208/343 (60%), Gaps = 14/343 (4%)

Query: 4   SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMF 63
           SS  LA   R + DP  AL+LF NP  +          PFRY+L  YDLII++L  A++F
Sbjct: 7   SSYHLAAALRREPDPAAALRLFLNPPASAT--------PFRYSLRCYDLIISRLAAARLF 58

Query: 64  DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT 123
             M+ IL +L   +   P+E + C V+  YGRARL   A + F    +F    T +  N 
Sbjct: 59  PAMESILSRLASSSGPRPREQLLCRVVSAYGRARLPAAARRAF-AHPAFPGPRTARALNA 117

Query: 124 LLNPKLTCGKLDRMKELFQI-MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR 182
           LL+  L C     +++L  +  +    PDAC+YNIL+     S  L  A  +FDEM++R 
Sbjct: 118 LLHALLACRA--PLRDLLAVCRDAGTPPDACTYNILMRAAAASGSLAHARHMFDEMLRRG 175

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
           + PT+VTFGTL+  LC   +++ A ++KE ++R Y+V P+  V+ SLIKGLC  G++  A
Sbjct: 176 IAPTVVTFGTLVAALCAAGQLEGAFEVKEVMVRQYHVLPNVYVYTSLIKGLCEKGDVDAA 235

Query: 243 LGVKEEMV-RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           + +KEEM  +  + +D+ +Y++L+ ALF+ GRK     +L+EMK  G   ++V YNA+++
Sbjct: 236 VALKEEMAGKADLVLDSAVYATLVRALFQVGRKGAVVGLLEEMKGSGVVADTVVYNAMLA 295

Query: 302 GFCKEE-DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           GFC++E D  AAF +LD+M   GCKA+ +SYN ++ GLCK G+
Sbjct: 296 GFCEDEKDLAAAFAVLDDMQKNGCKADAVSYNTLVAGLCKLGR 338



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 102/282 (36%), Gaps = 73/282 (25%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM--EKYVSPDACSYN 156
           L  A  MFDEM    +  TV  F TL+      G+L+   E+ ++M  + +V P+   Y 
Sbjct: 161 LAHARHMFDEMLRRGIAPTVVTFGTLVAALCAAGQLEGAFEVKEVMVRQYHVLPNVYVYT 220

Query: 157 ILIHG--------CVVSRRLEDAWK---VFDEMVKRRLQPTL------------------ 187
            LI G          V+ + E A K   V D  V   L   L                  
Sbjct: 221 SLIKGLCEKGDVDAAVALKEEMAGKADLVLDSAVYATLVRALFQVGRKGAVVGLLEEMKG 280

Query: 188 -------VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
                  V +  ++ G C + +   A     D M+    K D   + +L+ GLC      
Sbjct: 281 SGVVADTVVYNAMLAGFCEDEKDLAAAFAVLDDMQKNGCKADAVSYNTLVAGLC------ 334

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
                                        K GR  +   ++++M  +GC P+ VTY  L 
Sbjct: 335 -----------------------------KLGRWRDAHELVEDMPRQGCHPDVVTYRMLF 365

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            G C  E+F  A  +LDEM  KG   +       + G+ K+G
Sbjct: 366 DGMCAAEEFLEANQVLDEMVFKGFAPSNDGAQKFVQGIEKEG 407


>gi|226493605|ref|NP_001151863.1| rf1 protein [Zea mays]
 gi|195650381|gb|ACG44658.1| rf1 protein [Zea mays]
          Length = 467

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 133/334 (39%), Positives = 205/334 (61%), Gaps = 14/334 (4%)

Query: 13  RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ 72
           R + DP  AL+LF NP  +          PFRY+L  YDLII++L  A++F  M+ +L +
Sbjct: 27  RREPDPAAALRLFLNPPASAT--------PFRYSLRCYDLIISRLAAARLFPAMESVLSR 78

Query: 73  LKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132
           L   +   P+E + C V+  YGRARL   A + F    +F    T +  N LL+  L C 
Sbjct: 79  LASSSGPRPREQLLCRVVSAYGRARLPAAARRAF-AHPAFPGPRTARALNALLHALLACR 137

Query: 133 KLDRMKELFQI-MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
               +++L  +  +    PDAC+YNIL+     S  L  A  +FDEM++R + PT+VTFG
Sbjct: 138 A--PLRDLLAVCRDAGTPPDACTYNILMRAAAASGSLGHARHLFDEMLRRGIAPTVVTFG 195

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV- 250
           TL+  LC   ++++A ++KE ++R Y+V P+  V+ SLIKGLC  G++  A+ +KEEM  
Sbjct: 196 TLVAALCAAGQLEDAFEVKEVMVRQYHVLPNVYVYTSLIKGLCEKGDVDAAMALKEEMAG 255

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE-DF 309
           +  + +D+ +Y++L+ ALF+ GRK     +L+EMK  G   ++V YNA+++GFC++E D 
Sbjct: 256 KADLVLDSAVYATLVRALFQVGRKGAVVGLLEEMKGSGVVADTVVYNAMLAGFCEDEKDL 315

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            AAF +LD+M   GCKA+ +SYN ++ GLCK G+
Sbjct: 316 AAAFAVLDDMQKNGCKADAVSYNTLVAGLCKLGR 349



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 113/303 (37%), Gaps = 48/303 (15%)

Query: 45  YNLLHYDLIIT-KLGRAK-MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           YN+L      +  LG A+ +FDEM +          I P  + F  ++     A  LE A
Sbjct: 159 YNILMRAAAASGSLGHARHLFDEMLR--------RGIAPTVVTFGTLVAALCAAGQLEDA 210

Query: 103 LQMFDEM-SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP--DACSYNILI 159
            ++ + M   ++V   V  + +L+      G +D    L + M        D+  Y  L+
Sbjct: 211 FEVKEVMVRQYHVLPNVYVYTSLIKGLCEKGDVDAAMALKEEMAGKADLVLDSAVYATLV 270

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
                  R      + +EM    +    V +  ++ G C + +   A     D M+    
Sbjct: 271 RALFQVGRKGAVVGLLEEMKGSGVVADTVVYNAMLAGFCEDEKDLAAAFAVLDDMQKNGC 330

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           K D   + +L+ GLC                                   K GR  +   
Sbjct: 331 KADAVSYNTLVAGLC-----------------------------------KLGRWRDAHE 355

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           ++++M  +GC P+ VTY  L  G C  ++F  A  +LDEM  KG   +       + G+ 
Sbjct: 356 LVEDMPRQGCHPDVVTYRMLFDGMCAAKEFLEANQVLDEMVFKGFAPSNDGAQKFVQGIE 415

Query: 340 KDG 342
           K+G
Sbjct: 416 KEG 418


>gi|242087215|ref|XP_002439440.1| hypothetical protein SORBIDRAFT_09g006440 [Sorghum bicolor]
 gi|241944725|gb|EES17870.1| hypothetical protein SORBIDRAFT_09g006440 [Sorghum bicolor]
          Length = 462

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 133/338 (39%), Positives = 200/338 (59%), Gaps = 19/338 (5%)

Query: 15  QKDPKLALQLFKNP-NPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL 73
           + DP  AL+LF NP N  P+ +      PFRY+L  YD+II+KL  A++F +M+ IL  L
Sbjct: 17  ETDPAAALRLFLNPTNATPSSS------PFRYSLRCYDIIISKLAAARLFPDMESILSGL 70

Query: 74  KH---DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130
                 +    +E + C VI  YGRARL   A + F    +F    T    NTLL   L 
Sbjct: 71  PSAVPSSGTGTREHVLCQVISAYGRARLPAAARRAF-AHPAFPEPRTAHAVNTLLTALLA 129

Query: 131 CGKLDRMKELFQI-MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
           C     +++L  +  +  +SP+  +YNIL+     S  LE    +FDEM+   + PT+ T
Sbjct: 130 C--RSPLRDLLAVCRDTGISPNEGTYNILMRSAAASGSLEHVRHLFDEMLLLGVSPTVAT 187

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           FG ++  LC   ++++A ++KE ++R YNV P+  V+ASLIKGLC   ++  A+ +K+E+
Sbjct: 188 FGIMVAALCDADKLEQAFEVKEAMVRRYNVPPNAAVYASLIKGLCGRRKVDAAMRLKDEI 247

Query: 250 VRDKIEMDAG--IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
              K E+  G  +Y +L+ ALF+ GRK+E   +LKEMKER   P+ V +NA+I+G C++E
Sbjct: 248 A-GKAELVRGSVVYGTLVRALFQVGRKDEVVGLLKEMKERKIAPHRVVFNAMIAGLCEDE 306

Query: 308 -DFEAAFTILDEMGDK-GCKANPISYNVILGGLCKDGK 343
            D  AA  +LD+M  K GCK + +SY+ ++ GLCK GK
Sbjct: 307 RDPGAALAVLDDMQKKHGCKPDGVSYSTLVAGLCKLGK 344



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 113/273 (41%), Gaps = 39/273 (14%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
            DT I P E  +  ++     +  LE    +FDEM    V  TV  F  ++       KL
Sbjct: 142 RDTGISPNEGTYNILMRSAAASGSLEHVRHLFDEMLLLGVSPTVATFGIMVAALCDADKL 201

Query: 135 DRMKELFQIM-EKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDE--------------- 177
           ++  E+ + M  +Y V P+A  Y  LI G    R+++ A ++ DE               
Sbjct: 202 EQAFEVKEAMVRRYNVPPNAAVYASLIKGLCGRRKVDAAMRLKDEIAGKAELVRGSVVYG 261

Query: 178 ---------------------MVKRRLQPTLVTFGTLIYGLCLELR-VDEALKLKEDIMR 215
                                M +R++ P  V F  +I GLC + R    AL + +D+ +
Sbjct: 262 TLVRALFQVGRKDEVVGLLKEMKERKIAPHRVVFNAMIAGLCEDERDPGAALAVLDDMQK 321

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
            +  KPDG  +++L+ GLC +G+   A  + + M R     D   Y  L   L  AG  +
Sbjct: 322 KHGCKPDGVSYSTLVAGLCKLGKWREATELVKGMPRRDFPPDVVTYRMLFDGLCAAGEFH 381

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           E   +L +M  +G  P       L+ G  KE D
Sbjct: 382 EANKVLGDMLVKGFAPRMDGARKLVEGVEKEGD 414


>gi|53749325|gb|AAU90184.1| unkonwn protein [Oryza sativa Japonica Group]
 gi|55168288|gb|AAV44154.1| unknown protein [Oryza sativa Japonica Group]
          Length = 395

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/281 (41%), Positives = 176/281 (62%), Gaps = 7/281 (2%)

Query: 66  MQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125
           M+ +L +L    R  P+E + C VI  YGRARL   A + F    +F    T +  NTLL
Sbjct: 1   MESVLARLPSSLR--PREPLLCRVISAYGRARLPAAARRAF-AHPAFPAPRTARALNTLL 57

Query: 126 NPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVV-SRRLEDAWKVFDEMVKRRLQ 184
           +  L C +    + L +     + PDAC+YNIL+   V  S  +++A  +FDEM++R + 
Sbjct: 58  HALLAC-RAPLPELLSECRGSGIHPDACTYNILMRAAVADSGSVDNACLLFDEMLQRGIA 116

Query: 185 PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
           PT+VTFGTL+   C   R++EA K+KE +   YN++P+  V+ASL+K LC  G++  A  
Sbjct: 117 PTVVTFGTLVTAFCEAGRLEEAFKVKEVMSLQYNIRPNAHVYASLMKALCEKGKVDDAHR 176

Query: 245 VKEEMVRDKIEM-DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
           +KEEMV +   + D+G Y++L  ALF+ G+K E  ++L+EMKE+G K     +N++I+GF
Sbjct: 177 LKEEMVSNSEPLVDSGAYATLARALFRLGKKGEVVSLLEEMKEKGIKVGREVHNSMIAGF 236

Query: 304 CKEE-DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C++E D +AAF  LD+M   GCK + +SYN ++GGLCK G+
Sbjct: 237 CEDEGDLDAAFAALDDMQKGGCKPDSVSYNTLVGGLCKMGR 277



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 105/266 (39%), Gaps = 48/266 (18%)

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS-SFNVQMTVKF 120
           +FDEM Q          I P  + F  ++  +  A  LE A ++ + MS  +N++     
Sbjct: 106 LFDEMLQ--------RGIAPTVVTFGTLVTAFCEAGRLEEAFKVKEVMSLQYNIRPNAHV 157

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSP--DACSYNILIHGCVVSRRLEDAWKVFDEM 178
           + +L+      GK+D    L + M     P  D+ +Y  L        +  +   + +EM
Sbjct: 158 YASLMKALCEKGKVDDAHRLKEEMVSNSEPLVDSGAYATLARALFRLGKKGEVVSLLEEM 217

Query: 179 VKRRLQPTLVTFGTLIYGLCL-ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
            ++ ++       ++I G C  E  +D A    +D M+    KPD   + +L+ GLC   
Sbjct: 218 KEKGIKVGREVHNSMIAGFCEDEGDLDAAFAALDD-MQKGGCKPDSVSYNTLVGGLC--- 273

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
                                           K GR  +   ++++M  RGC+P+ VTY 
Sbjct: 274 --------------------------------KMGRWRDASELVEDMPRRGCRPDVVTYR 301

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKG 323
            L  G C    F  A  + +EM  KG
Sbjct: 302 RLFDGICDAGGFSEARRVFNEMVFKG 327


>gi|449436014|ref|XP_004135789.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
           mitochondrial-like [Cucumis sativus]
          Length = 460

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 179/328 (54%), Gaps = 13/328 (3%)

Query: 16  KDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 75
           KDP  AL LF+N +           K F+++   Y  +I KL R++ F+ ++ IL  L+ 
Sbjct: 60  KDPCEALALFENYHE----------KGFKHHYPSYSSLIYKLARSRRFEAVETILGHLR- 108

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           +  I   E +F  +I  YG+A L+E+ +++F +M SFN   T++ FN LLN  + C +  
Sbjct: 109 NRNIRCNETLFVALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFS 168

Query: 136 RMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           +  E+FQ   E    P++ SYNI+I G +     E A  +FDEM+++ +QP++VT+ + +
Sbjct: 169 KASEIFQQAYEMDFRPNSVSYNIMIKGWIKKGGWEQACNLFDEMLEKGVQPSVVTYNSFL 228

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
             LC +  +D AL L ++ M      P+   +A L++G C +G+   A  +  +M     
Sbjct: 229 GVLCRKGEMDTALCLFKN-MTEKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDMEFHGC 287

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           ++    Y  L++ L K G  +E  ++L EMK+R  KP+ VTYN L++  CKE     A+ 
Sbjct: 288 KLRPVNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKVGDAYK 347

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDG 342
           +L +M   GC  N  +Y +++ G C  G
Sbjct: 348 VLVKMQVGGCDPNAATYRMMIDGYCNAG 375


>gi|449485877|ref|XP_004157297.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g07740, mitochondrial-like [Cucumis sativus]
          Length = 460

 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 179/328 (54%), Gaps = 13/328 (3%)

Query: 16  KDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 75
           KDP  AL LF+N +           K F+++   Y  +I KL R++ F+ ++ IL  L+ 
Sbjct: 60  KDPCEALALFENYHE----------KGFKHHYPSYSSLIYKLARSRRFEAVETILGHLR- 108

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           +  I   E +F  +I  YG+A L+E+ +++F +M SFN   T++ FN LLN  + C +  
Sbjct: 109 NRNIRCNETLFVALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFS 168

Query: 136 RMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           +  E+FQ   E    P++ SYNI+I G +     E A  +FDEM+++ +QP++VT+ + +
Sbjct: 169 KASEIFQQAYEMGFRPNSVSYNIMIKGWIKKGGWEQACNLFDEMLEKGVQPSVVTYNSXL 228

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
             LC +  +D AL L ++ M      P+   +A L++G C +G+   A  +  +M     
Sbjct: 229 GVLCRKGEMDTALCLFKN-MTEKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDMEFHGC 287

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           ++    Y  L++ L K G  +E  ++L EMK+R  KP+ VTYN L++  CKE     A+ 
Sbjct: 288 KLRPVNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKVGDAYK 347

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDG 342
           +L +M   GC  N  +Y +++ G C  G
Sbjct: 348 VLVKMQVGGCDPNAATYRMMIDGYCNAG 375


>gi|297849070|ref|XP_002892416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338258|gb|EFH68675.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 459

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 181/328 (55%), Gaps = 13/328 (3%)

Query: 16  KDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 75
           +DP+ AL LF            +    FR++   Y  +I KL +++ FD + QIL  +++
Sbjct: 60  EDPEEALSLF----------HQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRY 109

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
              +  +E +F  +I  YG+A  +++A+ +F +++SF+   T++  NTL+N  +  G+L+
Sbjct: 110 RN-VRCRESLFMALIQHYGKAGWVDKAVDVFHKLTSFDCVRTIQSLNTLINVLVDNGELE 168

Query: 136 RMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           + K  F    +  + P++ S+NILI G +     E A KVFDEM++  +QP++VT+ +LI
Sbjct: 169 KAKSFFDGAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLI 228

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
             LC    + +A  L ED+++   ++P+   F  L+KGLC  GE + A  +  +M     
Sbjct: 229 GFLCRNNDMGKATSLLEDMIK-KRIRPNAVTFGLLMKGLCCNGEYNEAKKLMFDMEYRGC 287

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           +     Y  L+S L K G+ +E   +L EMK+R  KP+ V YN L++  C E     A+ 
Sbjct: 288 KPGLVNYGVLMSDLGKRGKIDEAKILLGEMKKRRIKPDFVIYNILVNHLCTEGRVPEAYR 347

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDG 342
            L EM  KGCK N  +Y +I+ G C+ G
Sbjct: 348 TLTEMQMKGCKPNAATYRMIVDGFCRIG 375


>gi|15222997|ref|NP_172253.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180186|sp|Q9LQQ1.1|PPR20_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g07740, mitochondrial; Flags: Precursor
 gi|8439893|gb|AAF75079.1|AC007583_15 It contains PPR repeats PF|01535 [Arabidopsis thaliana]
 gi|14596021|gb|AAK68738.1| Unknown protein [Arabidopsis thaliana]
 gi|31376389|gb|AAP49521.1| At1g07730 [Arabidopsis thaliana]
 gi|51970836|dbj|BAD44110.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190050|gb|AEE28171.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 459

 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 107/326 (32%), Positives = 181/326 (55%), Gaps = 13/326 (3%)

Query: 16  KDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 75
           +DP+ AL LF            +    FR++   Y  +I KL +++ FD + QIL  +++
Sbjct: 60  EDPEEALSLF----------HQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRY 109

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
              +  +E +F  +I  YG+A  +++A+ +F +++SF+   T++  NTL+N  +  G+L+
Sbjct: 110 RN-VRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELE 168

Query: 136 RMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           + K  F    +  + P++ S+NILI G +     E A KVFDEM++  +QP++VT+ +LI
Sbjct: 169 KAKSFFDGAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLI 228

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
             LC    + +A  L ED+++   ++P+   F  L+KGLC  GE + A  +  +M     
Sbjct: 229 GFLCRNDDMGKAKSLLEDMIK-KRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGC 287

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           +     Y  L+S L K GR +E   +L EMK+R  KP+ V YN L++  C E     A+ 
Sbjct: 288 KPGLVNYGILMSDLGKRGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYR 347

Query: 315 ILDEMGDKGCKANPISYNVILGGLCK 340
           +L EM  KGCK N  +Y +++ G C+
Sbjct: 348 VLTEMQMKGCKPNAATYRMMIDGFCR 373



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 112/245 (45%), Gaps = 10/245 (4%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           K+FDEM ++         + P  + + ++IGF  R   + +A  + ++M    ++     
Sbjct: 207 KVFDEMLEM--------EVQPSVVTYNSLIGFLCRNDDMGKAKSLLEDMIKKRIRPNAVT 258

Query: 121 FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           F  L+      G+ +  K+L   ME +   P   +Y IL+       R+++A  +  EM 
Sbjct: 259 FGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGKRGRIDEAKLLLGEMK 318

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           KRR++P +V +  L+  LC E RV EA ++  + M++   KP+   +  +I G C + + 
Sbjct: 319 KRRIKPDVVIYNILVNHLCTECRVPEAYRVLTE-MQMKGCKPNAATYRMMIDGFCRIEDF 377

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
              L V   M+  +       +  +++ L K G  +    +L+ M ++     S  +  L
Sbjct: 378 DSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGNLDHACFVLEVMGKKNLSFGSGAWQNL 437

Query: 300 ISGFC 304
           +S  C
Sbjct: 438 LSDLC 442


>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 521

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 178/337 (52%), Gaps = 14/337 (4%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L + +KDP+ AL++F               K F +N   Y  +I KL + K F  +  +L
Sbjct: 65  LIKREKDPQHALEIFNMVGEQ---------KGFNHNHATYSTLIHKLAQTKKFHAVDALL 115

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF-NVQMTVKFFNTLLNPKL 129
           HQ+ ++T     E IF N++  + ++ L ER L+MF  +      + ++K  +T LN  +
Sbjct: 116 HQMTYET-CKFHENIFLNLMKHFYKSSLHERVLEMFYAIQPIVREKPSLKAISTCLNILV 174

Query: 130 TCGKLDRMKELFQIMEKY--VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK-RRLQPT 186
              ++D  ++    + ++  V P+ C +NIL+     S  LE A +V  EM K RR  P 
Sbjct: 175 ESKQIDLAQKCLLYVNEHLKVRPNTCIFNILVKHHCKSGDLESALEVMHEMKKSRRSYPN 234

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
           ++T+ TLI GLC   R+ EA++L E+++    + PD   ++ LIKG C  G+   A  + 
Sbjct: 235 VITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKIM 294

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           E M  +  + +   YS L++   K GR  E   +  EMK  G KP++V Y  LI+ FC  
Sbjct: 295 EFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGV 354

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              + A  +L EM +  CKA+ +++NV+L GLC++G+
Sbjct: 355 GRIDEAMELLKEMTEMKCKADAVTFNVLLKGLCREGR 391



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 152/303 (50%), Gaps = 5/303 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERA 102
           R N   +++++    ++   +   +++H++K   R  P  I +  +I G  G  RL E A
Sbjct: 196 RPNTCIFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKE-A 254

Query: 103 LQMFDEMSSFNVQMTVKF-FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIH 160
           +++F+EM S +  +     ++ L+      GK DR +++ + M      P+  +Y++L++
Sbjct: 255 IELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMN 314

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     RLE+A +VFDEM    L+P  V + TLI   C   R+DEA++L +++  +   K
Sbjct: 315 GFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEM-KCK 373

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
            D   F  L+KGLC  G    AL + E +  + + ++ G Y  +++ L + G   +  A+
Sbjct: 374 ADAVTFNVLLKGLCREGRFDEALRMLENLAYEGVYLNKGSYRIVLNFLCQKGELEKSCAL 433

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L  M  RG  P+  T N L+   C+    + A T L  +   G    P S+  ++  +C+
Sbjct: 434 LGLMLSRGFVPHYATSNELLVCLCEAGMVDNAVTALFGLTQMGFTPEPKSWAHLIEYICR 493

Query: 341 DGK 343
           + K
Sbjct: 494 ERK 496



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 144/292 (49%), Gaps = 10/292 (3%)

Query: 57  LGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS-SFNVQ 115
           L  +K  D  Q+ L  +    ++ P   IF  ++  + ++  LE AL++  EM  S    
Sbjct: 173 LVESKQIDLAQKCLLYVNEHLKVRPNTCIFNILVKHHCKSGDLESALEVMHEMKKSRRSY 232

Query: 116 MTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-----PDACSYNILIHGCVVSRRLED 170
             V  ++TL++    CG   R+KE  ++ E+ VS     PDA +Y++LI G     + + 
Sbjct: 233 PNVITYSTLIDG--LCGN-GRLKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADR 289

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           A K+ + M      P +  +  L+ G C E R++EA ++  D M+   +KPD   + +LI
Sbjct: 290 ARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVF-DEMKSSGLKPDTVGYTTLI 348

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
              C VG +  A+ + +EM   K + DA  ++ L+  L + GR +E   +L+ +   G  
Sbjct: 349 NCFCGVGRIDEAMELLKEMTEMKCKADAVTFNVLLKGLCREGRFDEALRMLENLAYEGVY 408

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            N  +Y  +++  C++ + E +  +L  M  +G   +  + N +L  LC+ G
Sbjct: 409 LNKGSYRIVLNFLCQKGELEKSCALLGLMLSRGFVPHYATSNELLVCLCEAG 460


>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Vitis vinifera]
          Length = 513

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 182/337 (54%), Gaps = 14/337 (4%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L + + DP+ AL++F               + F +N   Y  I+ KL ++K F  +  +L
Sbjct: 66  LIKRETDPQRALEIF---------NRVAEQRGFSHNNATYATILHKLAKSKKFQAIDAVL 116

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF-NVQMTVKFFNTLLNPKL 129
           HQ+ ++T     E IF N++  + +  L ER ++MFD +      + ++K  +T LN  +
Sbjct: 117 HQMTYETCKF-HEGIFLNLMKHFSKLSLHERVVEMFDAIRPIVREKPSLKAISTCLNLLV 175

Query: 130 TCGKLDRMKELFQIMEKYVS--PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ-PT 186
              ++D  ++     +K ++  P+ C +NIL+     +  ++ A++V +EM K  +  P 
Sbjct: 176 ESNQVDLTRKFLLNSKKSLNLEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPN 235

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
           L+T+ TLI GLC   R+ EA++L E+++    + PD   + +LI G C   ++  AL + 
Sbjct: 236 LITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIM 295

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           E M ++    +   YS+L++   K GR  E   +  EMK  G KP++V Y  LI+ FC+ 
Sbjct: 296 EFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRA 355

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              + A  +L +M +  C+A+ +++NVILGGLC++G+
Sbjct: 356 GRVDEAMELLKDMRENKCRADTVTFNVILGGLCREGR 392



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 141/308 (45%), Gaps = 40/308 (12%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQMFDE 108
           +++++    +    D   +++ ++K      P  I +  +I G  G  RL E A+++F+E
Sbjct: 203 FNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKE-AIELFEE 261

Query: 109 MSSFNVQMTVKF-FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSR 166
           M S +  +     +N L+N      K+DR  ++ + M+K   +P+  +Y+ L++G     
Sbjct: 262 MVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEG 321

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           RLE+A +VFDEM    L+P  V + TLI   C   RVDEA++L +D MR    + D   F
Sbjct: 322 RLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKD-MRENKCRADTVTF 380

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
             ++ GLC  G    A G+ E +  + + ++   Y  ++++L + G   +   ++  M  
Sbjct: 381 NVILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLG 440

Query: 287 RGCKPNSVTYNALIS---------------------GF--------------CKEEDFEA 311
           RG  P+  T N L+                      GF              C+E     
Sbjct: 441 RGVLPHFATSNELLVHLCEAGKVGDAVMALLGLLELGFKPEPNSWALLVELICRERKLLP 500

Query: 312 AFTILDEM 319
           AF +LD++
Sbjct: 501 AFELLDDL 508


>gi|147858028|emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera]
          Length = 1051

 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 108/349 (30%), Positives = 192/349 (55%), Gaps = 25/349 (7%)

Query: 1   KPTSSIR-----LACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIIT 55
           + TS +R     LA L  +Q DP  AL LF            +    F+++   Y  ++ 
Sbjct: 373 RSTSRLRKRIPFLADLKSVQ-DPDDALSLFNQ----------YQQMGFKHDYPSYSALVY 421

Query: 56  KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ 115
           KL R++ F+ ++ +L  L+ +  I  +E +F  +I  YG++++ E+A+++F  M SFN  
Sbjct: 422 KLARSRNFEAVETLLDYLQ-NINIRCRETLFIALIQHYGKSQMPEKAIELFQRMPSFNCH 480

Query: 116 MTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDA 171
            T+  FNTLLN  +   ++DR  +   I ++        ++ S+NI+I G +     + A
Sbjct: 481 RTIVSFNTLLNVLV---EIDRFLDAIGIFDRSTKMGFRRNSISFNIIIKGWLGKGEWDKA 537

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIK 231
           W+VF+EM+ + ++PT+VTF +LI  LC +  +D A+ L ZD+++  + +P+   +A L++
Sbjct: 538 WQVFEEMIDKEVKPTVVTFNSLIGFLCGKGDLDGAMGLLZDMIQKRH-RPNAVTYALLME 596

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           GLC++G+   A  +  +M     +     +  L+S L + GR ++   +L EMK R  KP
Sbjct: 597 GLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLMSDLGRRGRIDDXKTLLLEMKRRRFKP 656

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + VTYN LI+  CKE     A+ +L EM   GC+ N  +Y +++ G C+
Sbjct: 657 DVVTYNILINXLCKEGRAXEAYKVLVEMQVGGCEPNAATYRMMVDGFCQ 705



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 124/264 (46%), Gaps = 5/264 (1%)

Query: 43  FRYNLLHYDLIITK-LGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLER 101
           FR N + +++II   LG+ + +D+  Q+  ++  D  + P  + F ++IGF      L+ 
Sbjct: 514 FRRNSISFNIIIKGWLGKGE-WDKAWQVFEEMI-DKEVKPTVVTFNSLIGFLCGKGDLDG 571

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIH 160
           A+ + ++M     +     +  L+    + GK    K++ F +  +   P   ++ +L+ 
Sbjct: 572 AMGLLZDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLMS 631

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                 R++D   +  EM +RR +P +VT+  LI  LC E R  EA K+  + M+V   +
Sbjct: 632 DLGRRGRIDDXKTLLLEMKRRRFKPDVVTYNILINXLCKEGRAXEAYKVLVE-MQVGGCE 690

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   +  ++ G C V +    L V   M+          +  L+  L K G+ +    +
Sbjct: 691 PNAATYRMMVDGFCQVEDFEGGLKVLSAMLMCGHCPRLESFCDLVVGLLKNGKIDGACFV 750

Query: 281 LKEMKERGCKPNSVTYNALISGFC 304
           L+EM++R  + +   + AL+   C
Sbjct: 751 LEEMEKRKMRFHLEAWEALVKDAC 774


>gi|356544600|ref|XP_003540737.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
           mitochondrial-like [Glycine max]
          Length = 449

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 177/328 (53%), Gaps = 17/328 (5%)

Query: 16  KDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 75
           +DP+ AL LF            +  + FR+    Y  ++ KL R++MFD ++ IL  +K 
Sbjct: 53  EDPEEALSLFHR----------YKEQGFRHYYPSYAALLYKLARSRMFDAVETILAHMK- 101

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           DT +  +E +F  +   YG     E+A+++F+ M  FN   T++ FN LLN  +   + D
Sbjct: 102 DTEMQCRESVFIALFQHYGP----EKAVELFNRMPQFNCTRTIQSFNALLNVLIDNDRFD 157

Query: 136 RMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
              ++F +  E    P+  ++NI++ G +       A +VFDEM+++R+QP++VT+ +LI
Sbjct: 158 EANDIFGKSYEMGFRPNTVTFNIMVKGRLAKGEWGKACEVFDEMLQKRVQPSVVTYNSLI 217

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
             LC +  +D+A+ L ED M       +   +A L++GLC+V +   A  +  +M     
Sbjct: 218 GFLCRKGDLDKAMALLED-MGQKGKHANEVTYALLMEGLCSVEKTEEAKKLMFDMAYRGC 276

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           +     +  L++ L K G+  E  ++L EMK+R  KP+ VTYN LI+  CKE     A+ 
Sbjct: 277 KAQPVNFGVLMNDLGKRGKVEEAKSLLHEMKKRRLKPDVVTYNILINYLCKEGKAMEAYK 336

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDG 342
           +L EM   GC  N  +Y +++ GLC+ G
Sbjct: 337 VLLEMQIGGCVPNAATYRMVVDGLCQIG 364



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 95/178 (53%), Gaps = 7/178 (3%)

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM-RVYNV--KPDGQV 225
           E A ++F+ M +     T+ +F  L+  L    R DEA     DI  + Y +  +P+   
Sbjct: 122 EKAVELFNRMPQFNCTRTIQSFNALLNVLIDNDRFDEA----NDIFGKSYEMGFRPNTVT 177

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F  ++KG  A GE   A  V +EM++ +++     Y+SLI  L + G  ++  A+L++M 
Sbjct: 178 FNIMVKGRLAKGEWGKACEVFDEMLQKRVQPSVVTYNSLIGFLCRKGDLDKAMALLEDMG 237

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           ++G   N VTY  L+ G C  E  E A  ++ +M  +GCKA P+++ V++  L K GK
Sbjct: 238 QKGKHANEVTYALLMEGLCSVEKTEEAKKLMFDMAYRGCKAQPVNFGVLMNDLGKRGK 295


>gi|224072823|ref|XP_002303899.1| predicted protein [Populus trichocarpa]
 gi|222841331|gb|EEE78878.1| predicted protein [Populus trichocarpa]
          Length = 427

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 181/328 (55%), Gaps = 13/328 (3%)

Query: 16  KDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 75
           +DP  AL LF            +  + F+ +   Y  ++ KL R + F  ++++L  ++ 
Sbjct: 42  RDPVEALTLF----------HEYLQRGFKPDYPSYAALLYKLARCQDFGAVEEVLRYVE- 90

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           D  +  +E IF  +   YG+A+L+ +A+++F+ M+ FN   T +  N+LLN  +  G   
Sbjct: 91  DKNVHCQETIFIALFQHYGKAQLVHKAVELFNRMTRFNCVRTSQSLNSLLNVLVDNGWFL 150

Query: 136 RMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
              ELF +  E     ++ ++N++I G +     E A KVFDEM++R+++P++VT+ +LI
Sbjct: 151 EANELFDKGYEMGFRLNSVAFNVMIKGWLEKGEWEQASKVFDEMLERKVEPSVVTYNSLI 210

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
             LC    +D+A  L ED+++    +P+   FA L++G C +GE + A  +  +M     
Sbjct: 211 GYLCRNGELDKAKGLLEDMIK-KGKRPNAITFALLMEGSCLIGEHNEAKKMMFDMEYRGC 269

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           +     +  L+S L K G+ +E  ++L EMK+R  KP+ VTYN LI+  CKE     A+ 
Sbjct: 270 KPTVVNFGVLMSDLGKRGKIDEAKSVLHEMKKRHMKPDVVTYNILINYLCKEGRAADAYE 329

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDG 342
           +L EM   GC+AN  +Y +++ G C+ G
Sbjct: 330 VLFEMQVGGCEANAATYRMLVDGFCRVG 357



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 124/264 (46%), Gaps = 3/264 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           FR N + ++++I        +++  ++  ++  + ++ P  + + ++IG+  R   L++A
Sbjct: 164 FRLNSVAFNVMIKGWLEKGEWEQASKVFDEML-ERKVEPSVVTYNSLIGYLCRNGELDKA 222

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHG 161
             + ++M     +     F  L+      G+ +  K++   ME +   P   ++ +L+  
Sbjct: 223 KGLLEDMIKKGKRPNAITFALLMEGSCLIGEHNEAKKMMFDMEYRGCKPTVVNFGVLMSD 282

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                ++++A  V  EM KR ++P +VT+  LI  LC E R  +A ++  + M+V   + 
Sbjct: 283 LGKRGKIDEAKSVLHEMKKRHMKPDVVTYNILINYLCKEGRAADAYEVLFE-MQVGGCEA 341

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   +  L+ G C VG+    L V   M+          + SL+  L K+G  +    +L
Sbjct: 342 NAATYRMLVDGFCRVGDFEGGLKVLNAMLTSGHFPRVETFRSLVVGLVKSGNLDGACFVL 401

Query: 282 KEMKERGCKPNSVTYNALISGFCK 305
           +EM++R     +  + AL+   C+
Sbjct: 402 EEMEKRQMMFCADDWEALVMESCR 425


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/296 (34%), Positives = 165/296 (55%), Gaps = 3/296 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ ++  L +A   +E Q +  +LK   +  P  + +  +I   GRA   E AL++
Sbjct: 8   NVVTYNSLLNALAKAGQCEEAQLLFEELKA-AKWTPDVVSYSCLINSLGRAGKWEAALEV 66

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVV 164
             EM +   +  +  +NTL++     G+ D  ++ L ++ +    PD  +YN LI     
Sbjct: 67  VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGK 126

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + RL +A+ +F EM +R   P   T+ +LIYGL    R  +A++L E++ R +   PD  
Sbjct: 127 AGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMER-HGCPPDVM 185

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++SLI GL   GE   A  + +EM R   + D+  +++L+ AL KAGR ++   +L EM
Sbjct: 186 TYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEM 245

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           KERG KP  VTYNALI+GF K  D   A+ +LDEM   GCK + ++Y+ ++ GL K
Sbjct: 246 KERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIK 301



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 159/308 (51%), Gaps = 6/308 (1%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           + +A   KP   NL  Y+ ++  LG+A  FDE  ++L +++ D   VP    +  +I   
Sbjct: 69  EMQAKGCKP---NLWTYNTLVDCLGKAGQFDEALRLLAEMR-DNGCVPDVRTYNCLISTL 124

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDA 152
           G+A  L  A  +F EM           +N+L+      G+  +  EL + ME++   PD 
Sbjct: 125 GKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDV 184

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +Y+ LI G         A+K+F EM +R  +P  +TF  L+  L    RVD+AL+L  D
Sbjct: 185 MTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELL-D 243

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M+   VKP    + +LI G   VG+L  A  + +EM R+  + D   YS LI+ L KA 
Sbjct: 244 EMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKAS 303

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           + +E   +LK+M++ GC P+++TYN LI+G  K      A  + D M  KGC  + ++Y+
Sbjct: 304 QLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYS 363

Query: 333 VILGGLCK 340
            ++  L K
Sbjct: 364 TLITALGK 371



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 150/288 (52%), Gaps = 3/288 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           + + Y+ +I  LG+A + ++  ++  ++K      P  + +  +I   G+A  +E A  +
Sbjct: 323 DTITYNTLINGLGKAGLLNDAGRLFDRMKSKG-CNPDVVTYSTLITALGKAARVESACVL 381

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           F+EM S  +Q  +  + +++      G++D    LF  M  K +SPD  +YN  ++    
Sbjct: 382 FEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGR 441

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R ++A K+F++M +  L P + T+  L+ GL     VD+A  L ++++       D  
Sbjct: 442 GGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIE-QGCAFDSL 500

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F   ++ L + G +  A  + +      +   A  Y++LI AL KAGR +E    L+++
Sbjct: 501 KFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDL 560

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           KE+G KP+ V+Y++LIS   +    + AF +L+EM  +G K +P SY+
Sbjct: 561 KEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYS 608



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 147/289 (50%), Gaps = 3/289 (1%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           + +  ++  LG+A   D+  ++L ++K +  + P  + +  +I  +G+   L  A  + D
Sbjct: 220 ITFTALMDALGKAGRVDDALELLDEMK-ERGVKPGVVTYNALIAGFGKVGDLVEAYNLLD 278

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSR 166
           EM     +  V  ++ L+   +   +LD   ++ + MEK    PD  +YN LI+G   + 
Sbjct: 279 EMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAG 338

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
            L DA ++FD M  +   P +VT+ TLI  L    RV+ A  L E+ M    ++PD   +
Sbjct: 339 LLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEE-MESVGIQPDLFTY 397

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
            S+I  L   G++  A  +  EM    +  D   Y++ +++L + GR  E   I ++MKE
Sbjct: 398 CSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKE 457

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
            G  P+  TY+AL+ G  K ++ + A  +L E+ ++GC  + + ++  L
Sbjct: 458 SGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECL 506



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 156/311 (50%), Gaps = 12/311 (3%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           + E H   P   +++ Y  +IT LG+     +  ++  ++K   R  P  I F  ++   
Sbjct: 174 EMERHGCPP---DVMTYSSLITGLGKDGETVKAFKLFQEMKRRGR-KPDSITFTALMDAL 229

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----VS 149
           G+A  ++ AL++ DEM    V+  V  +N L+      GK+  + E + ++++       
Sbjct: 230 GKAGRVDDALELLDEMKERGVKPGVVTYNALI---AGFGKVGDLVEAYNLLDEMKRNGCK 286

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PD  +Y+ LI G + + +L++A +V  +M K    P  +T+ TLI GL     +++A +L
Sbjct: 287 PDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRL 346

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
             D M+     PD   +++LI  L     +  A  + EEM    I+ D   Y S+I+ L 
Sbjct: 347 F-DRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLG 405

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           KAG+ ++   +  EM+ +G  P+ +TYNA ++   +   F+ A  I ++M + G   +  
Sbjct: 406 KAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVA 465

Query: 330 SYNVILGGLCK 340
           +Y+ +L GL K
Sbjct: 466 TYDALLLGLSK 476



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 147/299 (49%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +IT L +A   DE  Q+L +++ +    P  I +  +I   G+A LL  A ++
Sbjct: 288 DVVTYSCLITGLIKASQLDEACQVLKKMEKEG-CPPDTITYNTLINGLGKAGLLNDAGRL 346

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           FD M S      V  ++TL+       +++    LF+ ME   + PD  +Y  +I     
Sbjct: 347 FDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGK 406

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + +++DA ++F EM  + L P ++T+   +  L    R  EA K+ ED M+   + PD  
Sbjct: 407 AGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFED-MKESGLLPDVA 465

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +L+ GL    E+  A G+ +E++      D+  +   +  L   G  +E   +L+  
Sbjct: 466 TYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFA 525

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G  P + +YNALI    K      AF  L+++ ++G K + +SY+ ++  L + G+
Sbjct: 526 NSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQ 584



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 2/227 (0%)

Query: 118 VKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFD 176
           V  +N+LLN     G+ +  + LF+ ++    +PD  SY+ LI+    + + E A +V  
Sbjct: 9   VVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVA 68

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
           EM  +  +P L T+ TL+  L    + DEAL+L  + MR     PD + +  LI  L   
Sbjct: 69  EMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAE-MRDNGCVPDVRTYNCLISTLGKA 127

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           G LS A  +  EM       D   Y+SLI  L K GR  +   +L+EM+  GC P+ +TY
Sbjct: 128 GRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTY 187

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           ++LI+G  K+ +   AF +  EM  +G K + I++  ++  L K G+
Sbjct: 188 SSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGR 234



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 144/302 (47%), Gaps = 8/302 (2%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F YN L Y L   K+GR++   +  ++L +++      P  + + ++I   G+     +A
Sbjct: 150 FTYNSLIYGL--GKVGRSQ---KAMELLEEMERHG-CPPDVMTYSSLITGLGKDGETVKA 203

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG 161
            ++F EM     +     F  L++     G++D   EL   M E+ V P   +YN LI G
Sbjct: 204 FKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAG 263

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 L +A+ + DEM +   +P +VT+  LI GL    ++DEA ++ +  M      P
Sbjct: 264 FGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKK-MEKEGCPP 322

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +LI GL   G L+ A  + + M       D   YS+LI+AL KA R      + 
Sbjct: 323 DTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLF 382

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           +EM+  G +P+  TY ++I+   K    + A  +  EM  KG   + I+YN  L  L + 
Sbjct: 383 EEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRG 442

Query: 342 GK 343
           G+
Sbjct: 443 GR 444



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 110/200 (55%), Gaps = 1/200 (0%)

Query: 144 MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
           M+ + SP+  +YN L++    + + E+A  +F+E+   +  P +V++  LI  L    + 
Sbjct: 1   MKGFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKW 60

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
           + AL++  + M+    KP+   + +L+  L   G+   AL +  EM  +    D   Y+ 
Sbjct: 61  EAALEVVAE-MQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNC 119

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LIS L KAGR +E   +  EM+ERGC P++ TYN+LI G  K    + A  +L+EM   G
Sbjct: 120 LISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHG 179

Query: 324 CKANPISYNVILGGLCKDGK 343
           C  + ++Y+ ++ GL KDG+
Sbjct: 180 CPPDVMTYSSLITGLGKDGE 199



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 113/265 (42%), Gaps = 38/265 (14%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +IT LG+A    E   +L +      I P    +C++I   G+A  ++ A ++
Sbjct: 358 DVVTYSTLITALGKAARV-ESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRL 416

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F EM    +   V  +N  LN     G+    +++F+ M E  + PD  +Y+ L+ G   
Sbjct: 417 FSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSK 476

Query: 165 SRRLEDAWKVFDEMVK-----------------------------------RRLQPTLVT 189
           ++ ++DA  +  E+++                                   + L P   +
Sbjct: 477 TKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASS 536

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           +  LI  L    RV EA    ED ++    KPD   ++SLI  L   G++  A  + EEM
Sbjct: 537 YNALIDALAKAGRVSEAFNTLED-LKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEM 595

Query: 250 VRDKIEMDAGIYSSLISALFKAGRK 274
            +  +++    YS+L+  L   G +
Sbjct: 596 SKRGLKLSPRSYSNLVRKLQDWGAR 620


>gi|297746144|emb|CBI16200.3| unnamed protein product [Vitis vinifera]
          Length = 1093

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 191/349 (54%), Gaps = 25/349 (7%)

Query: 1   KPTSSIR-----LACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIIT 55
           + TS +R     LA L  +Q DP  AL LF            +    F+++   Y  ++ 
Sbjct: 444 RSTSRLRKRIPFLADLKSVQ-DPDDALSLFNQ----------YQQMGFKHDYPSYSALVY 492

Query: 56  KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ 115
           KL R++ F+ ++ +L  L+ +  I  +E +F  +I  YG++++ E+A+++F  M SFN  
Sbjct: 493 KLARSRNFEAVETLLDYLQ-NINIRCRETLFIALIQHYGKSQMPEKAVELFQRMPSFNCH 551

Query: 116 MTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDA 171
            T+  FNTLLN  +   + DR  +   I ++        ++ S+NI+I G +     + A
Sbjct: 552 RTLVSFNTLLNVLV---ENDRFLDAIGIFDRSTKMGFRRNSISFNIIIKGWLGKGEWDKA 608

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIK 231
           W+VF+EM+ + ++PT+VTF +LI  LC +  +D A+ L ED+++  + +P+   +A L++
Sbjct: 609 WQVFEEMIDKEVKPTVVTFNSLIGFLCGKGDLDGAMGLLEDMIQKRH-RPNAVTYALLME 667

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           GLC++G+   A  +  +M     +     +  L+S L + GR ++   +L EMK R  KP
Sbjct: 668 GLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLMSDLGRRGRIDDSKTLLLEMKRRRFKP 727

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + VTYN LI+  CKE     A+ +L EM   GC+ N  +Y +++ G C+
Sbjct: 728 DVVTYNILINHLCKEGRALEAYKVLVEMQVGGCEPNAATYRMMVDGFCQ 776



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 125/264 (47%), Gaps = 5/264 (1%)

Query: 43  FRYNLLHYDLIITK-LGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLER 101
           FR N + +++II   LG+ + +D+  Q+  ++  D  + P  + F ++IGF      L+ 
Sbjct: 585 FRRNSISFNIIIKGWLGKGE-WDKAWQVFEEMI-DKEVKPTVVTFNSLIGFLCGKGDLDG 642

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIH 160
           A+ + ++M     +     +  L+    + GK    K++ F +  +   P   ++ +L+ 
Sbjct: 643 AMGLLEDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLMS 702

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                 R++D+  +  EM +RR +P +VT+  LI  LC E R  EA K+  + M+V   +
Sbjct: 703 DLGRRGRIDDSKTLLLEMKRRRFKPDVVTYNILINHLCKEGRALEAYKVLVE-MQVGGCE 761

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   +  ++ G C V +    L V   M+          +  L+  L K G+ +    +
Sbjct: 762 PNAATYRMMVDGFCQVEDFEGGLKVLSAMLMCGHCPRLESFCDLVVGLLKNGKIDGACFV 821

Query: 281 LKEMKERGCKPNSVTYNALISGFC 304
           L+EM++R  + +   + AL+   C
Sbjct: 822 LEEMEKRKMRFHLEAWEALVKDAC 845


>gi|225435096|ref|XP_002281474.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
           mitochondrial-like [Vitis vinifera]
          Length = 501

 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 190/349 (54%), Gaps = 25/349 (7%)

Query: 1   KPTSSIR-----LACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIIT 55
           + TS +R     LA L  +Q DP  AL LF            +    F+++   Y  ++ 
Sbjct: 82  RSTSRLRKRIPFLADLKSVQ-DPDDALSLFNQ----------YQQMGFKHDYPSYSALVY 130

Query: 56  KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ 115
           KL R++ F+ ++ +L  L+ +  I  +E +F  +I  YG++++ E+A+++F  M SFN  
Sbjct: 131 KLARSRNFEAVETLLDYLQ-NINIRCRETLFIALIQHYGKSQMPEKAVELFQRMPSFNCH 189

Query: 116 MTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDA 171
            T+  FNTLLN      + DR  +   I ++        ++ S+NI+I G +     + A
Sbjct: 190 RTLVSFNTLLN---VLVENDRFLDAIGIFDRSTKMGFRRNSISFNIIIKGWLGKGEWDKA 246

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIK 231
           W+VF+EM+ + ++PT+VTF +LI  LC +  +D A+ L ED+++  + +P+   +A L++
Sbjct: 247 WQVFEEMIDKEVKPTVVTFNSLIGFLCGKGDLDGAMGLLEDMIQKRH-RPNAVTYALLME 305

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           GLC++G+   A  +  +M     +     +  L+S L + GR ++   +L EMK R  KP
Sbjct: 306 GLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLMSDLGRRGRIDDSKTLLLEMKRRRFKP 365

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + VTYN LI+  CKE     A+ +L EM   GC+ N  +Y +++ G C+
Sbjct: 366 DVVTYNILINHLCKEGRALEAYKVLVEMQVGGCEPNAATYRMMVDGFCQ 414



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 125/264 (47%), Gaps = 5/264 (1%)

Query: 43  FRYNLLHYDLIITK-LGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLER 101
           FR N + +++II   LG+ + +D+  Q+  ++  D  + P  + F ++IGF      L+ 
Sbjct: 223 FRRNSISFNIIIKGWLGKGE-WDKAWQVFEEMI-DKEVKPTVVTFNSLIGFLCGKGDLDG 280

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIH 160
           A+ + ++M     +     +  L+    + GK    K++ F +  +   P   ++ +L+ 
Sbjct: 281 AMGLLEDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLMS 340

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                 R++D+  +  EM +RR +P +VT+  LI  LC E R  EA K+  + M+V   +
Sbjct: 341 DLGRRGRIDDSKTLLLEMKRRRFKPDVVTYNILINHLCKEGRALEAYKVLVE-MQVGGCE 399

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   +  ++ G C V +    L V   M+          +  L+  L K G+ +    +
Sbjct: 400 PNAATYRMMVDGFCQVEDFEGGLKVLSAMLMCGHCPRLESFCDLVVGLLKNGKIDGACFV 459

Query: 281 LKEMKERGCKPNSVTYNALISGFC 304
           L+EM++R  + +   + AL+   C
Sbjct: 460 LEEMEKRKMRFHLEAWEALVKDAC 483


>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
 gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
          Length = 504

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 178/337 (52%), Gaps = 14/337 (4%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L + ++DP+ AL +F   +           + F +N   Y  II  L + K F  +  +L
Sbjct: 56  LIKNERDPQHALDIFNMVSEQ---------QGFNHNHATYASIIQNLAKYKKFQAIDGVL 106

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF-NVQMTVKFFNTLLNPKL 129
           HQ+ +DT  V  E IF N++  + ++ + ER L MF  + S    + ++K  +T LN  +
Sbjct: 107 HQMTYDTCKV-HEGIFLNLMKHFSKSSMHERVLDMFYAIKSIVREKPSLKAISTCLNLLV 165

Query: 130 TCGKLDRMKELFQIMEKYVS--PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ-PT 186
              ++D  ++L       ++  P+ C +NIL+     +  L+ A++V  EM   R+  P 
Sbjct: 166 ESDRVDLARKLLVNARSKLNLRPNTCIFNILVKHHCRNGDLQAAFEVVKEMKSARVSYPN 225

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
           LVT+ TLI GLC   ++ EA++  E+++   N+ PD   +  LI G C  G++  A  + 
Sbjct: 226 LVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTIL 285

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           E M  +    +   YS L++   K GR  E   +  E+K  G KP++++Y  LI+  C+ 
Sbjct: 286 EFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCRT 345

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              + A  +L +M DK C+A+ +++NV+LGGLC++G+
Sbjct: 346 GRVDEATELLQQMKDKDCRADTVTFNVMLGGLCREGR 382



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 138/278 (49%), Gaps = 3/278 (1%)

Query: 68  QILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM-SSFNVQMTVKFFNTLLN 126
           +++ ++K      P  + +  +IG       L+ A++ F+EM S  N+      +N L+N
Sbjct: 211 EVVKEMKSARVSYPNLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILIN 270

Query: 127 PKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
                GK+DR + + + M+    SP+  +Y++L++G     RL++A +VF+E+    ++P
Sbjct: 271 GFCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKP 330

Query: 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
             +++ TLI  LC   RVDEA +L +  M+  + + D   F  ++ GLC  G    AL +
Sbjct: 331 DTISYTTLINCLCRTGRVDEATELLQQ-MKDKDCRADTVTFNVMLGGLCREGRFDEALDM 389

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
            +++  +   ++ G Y  +++ L + G   +   +L  M  RG  P+  T N L+   C 
Sbjct: 390 VQKLPFEGFYLNKGSYRIVLNFLTQKGELRKATELLGLMLNRGFVPHHATSNTLLLLLCN 449

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               + A   L  + + G K    S+  ++  +C++ K
Sbjct: 450 NGMVKDAVESLLGLLEMGFKPEHESWFTLVDLICRERK 487



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 129/283 (45%), Gaps = 39/283 (13%)

Query: 64  DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQM-TVKFFN 122
           D  +++L   +    + P   IF  ++  + R   L+ A ++  EM S  V    +  ++
Sbjct: 171 DLARKLLVNARSKLNLRPNTCIFNILVKHHCRNGDLQAAFEVVKEMKSARVSYPNLVTYS 230

Query: 123 TLLNPKLTCGKLDRMKELFQIM--EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           TL+      GKL    E F+ M  +  + PDA +YNILI+G     +++ A  + + M  
Sbjct: 231 TLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTILEFMKS 290

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
               P +  +  L+ G C E R+ EA ++  +I +   +KPD   + +LI  LC      
Sbjct: 291 NGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEI-KSLGMKPDTISYTTLINCLC------ 343

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
                                        + GR +E   +L++MK++ C+ ++VT+N ++
Sbjct: 344 -----------------------------RTGRVDEATELLQQMKDKDCRADTVTFNVML 374

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            G C+E  F+ A  ++ ++  +G   N  SY ++L  L + G+
Sbjct: 375 GGLCREGRFDEALDMVQKLPFEGFYLNKGSYRIVLNFLTQKGE 417


>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Glycine max]
          Length = 546

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 180/342 (52%), Gaps = 24/342 (7%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L + +KDP+ AL +F   +             F++N   Y  I+ KL R   F  + ++L
Sbjct: 99  LIKREKDPQHALNIFNMVSEQ---------NGFQHNNATYATILDKLARCNNFHAVDRVL 149

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV------KFFNTL 124
           HQ+ ++T     E IF N++  + ++ L E+ L  +     F++Q  V      K  +T 
Sbjct: 150 HQMTYET-CKFHEGIFVNLMKHFSKSSLHEKLLHAY-----FSIQPIVREKPSPKALSTC 203

Query: 125 LNPKLTCGKLDRMKELFQIMEKYVS--PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR 182
           LN  L   ++D  ++L    ++ ++  P+ C +NIL+     +  L+ A+++ +EM    
Sbjct: 204 LNLLLDSNRVDLARKLLLHAKRDLTRKPNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSE 263

Query: 183 LQ-PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
              P LVT+ TL+ GLC   RV EA  L E+++   ++ PD   +  LI G C  G+   
Sbjct: 264 FSYPNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDR 323

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           A  V + M  +    +   YS+L+  L K G+  +   +L E+K  G KP++VTY +LI+
Sbjct: 324 ARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLIN 383

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             C+    + A  +L+EM + GC+A+ +++NV+LGGLC++GK
Sbjct: 384 FLCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGK 425



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 146/300 (48%), Gaps = 3/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  +++++    +    D   +I+ ++++     P  + +  ++    R   ++ A  +
Sbjct: 232 NVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFDL 291

Query: 106 FDEMSSFNVQMTVKF-FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV 163
           F+EM S +  +     +N L+N     GK DR + + Q M+     P+  +Y+ L+ G  
Sbjct: 292 FEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLC 351

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              +LEDA  V  E+    L+P  VT+ +LI  LC   + DEA++L E+ M+    + D 
Sbjct: 352 KVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEE-MKENGCQADS 410

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             F  L+ GLC  G+   AL + E++ +  + ++ G Y  ++++L +         +L  
Sbjct: 411 VTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQKCELKRAKELLGL 470

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M  RG +P+  T N L+   CK    + A   L ++ + G +    ++ V++G +C++ K
Sbjct: 471 MLRRGFQPHYATSNELLVCLCKAGMVDDAAVALFDLVEMGFQPGLETWEVLIGLICRERK 530



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 141/286 (49%), Gaps = 12/286 (4%)

Query: 64  DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM--SSFNVQMTVKFF 121
           D  +++L   K D    P   +F  ++ ++ +   L+ A ++ +EM  S F+    V + 
Sbjct: 214 DLARKLLLHAKRDLTRKPNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTY- 272

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKYVS-----PDACSYNILIHGCVVSRRLEDAWKVFD 176
           +TL++     G   R+KE F + E+ VS     PD  +YN+LI+G     + + A  V  
Sbjct: 273 STLMDGLCRNG---RVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQ 329

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
            M      P +  +  L+ GLC   ++++A  +  +I +   +KPD   + SLI  LC  
Sbjct: 330 FMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEI-KGSGLKPDAVTYTSLINFLCRN 388

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           G+   A+ + EEM  +  + D+  ++ L+  L + G+  E   +++++ ++G   N  +Y
Sbjct: 389 GKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSY 448

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             +++   ++ + + A  +L  M  +G + +  + N +L  LCK G
Sbjct: 449 RIVLNSLTQKCELKRAKELLGLMLRRGFQPHYATSNELLVCLCKAG 494



 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 5/176 (2%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP   + + Y  +I  L R    DE  ++L ++K +       + F  ++G   R    
Sbjct: 371 LKP---DAVTYTSLINFLCRNGKSDEAIELLEEMKENG-CQADSVTFNVLLGGLCREGKF 426

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           E AL M +++    V +    +  +LN      +L R KEL  +M  +   P   + N L
Sbjct: 427 EEALDMVEKLPQQGVYLNKGSYRIVLNSLTQKCELKRAKELLGLMLRRGFQPHYATSNEL 486

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           +     +  ++DA     ++V+   QP L T+  LI  +C E ++    +L ++++
Sbjct: 487 LVCLCKAGMVDDAAVALFDLVEMGFQPGLETWEVLIGLICRERKLLYVFELLDELV 542


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 99/293 (33%), Positives = 156/293 (53%), Gaps = 3/293 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I+ + +    +E   IL ++K +  ++P  + +  +I  Y     L +A    DEM
Sbjct: 309 YGSLISGMCKGGKLEEASGILEKMK-EIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEM 367

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
               +  TV  +N L++     GK+D    + + M +  + PD+ +YNILI+G       
Sbjct: 368 VRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNA 427

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A+ + DEM+ + +QPTLVT+ +LIY L    R+  A  L E I+R     PD  +F +
Sbjct: 428 KKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIR-EGASPDLIMFNA 486

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G CA G L  A  + +EM +  I  D   Y++L+    + G+  E   +LKEMK RG
Sbjct: 487 LIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRG 546

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            +P+ ++YN LISG+ K  D   AFTI DEM   G     ++YN ++ GLCK+
Sbjct: 547 IRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKN 599



 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 152/292 (52%), Gaps = 3/292 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           +D++I      K  D+  +    +K +  +VPK   F  ++  + +    E    ++ EM
Sbjct: 169 FDMLIRACCELKRGDDAFECFDMMK-EKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEM 227

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
               ++ TV  FN ++N     GKL + K+    ME   V P+  +YN +IHG     R+
Sbjct: 228 FRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRV 287

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E A  V D M  R ++P   T+G+LI G+C   +++EA  + E  M+   + P    + +
Sbjct: 288 EGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEK-MKEIGLLPTAVTYNT 346

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G C  G+L  A G ++EMVR  I      Y+ LI ALF  G+ +E   ++K+M + G
Sbjct: 347 LIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSG 406

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             P+S+TYN LI+G+C+  + + AF + DEM  KG +   ++Y  ++  L K
Sbjct: 407 IVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSK 458



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 134/267 (50%), Gaps = 4/267 (1%)

Query: 79  IVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           + P  + +  VI G+  R R+ E A  + D M +  V+     + +L++     GKL+  
Sbjct: 267 VKPNVVTYNTVIHGYCSRGRV-EGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEA 325

Query: 138 KELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
             + + M++  + P A +YN LI G      L  A+   DEMV+R + PT+ T+  LI+ 
Sbjct: 326 SGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHA 385

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           L LE ++DEA  + +D M    + PD   +  LI G C  G    A  + +EM+   I+ 
Sbjct: 386 LFLEGKMDEADGMIKD-MGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQP 444

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
               Y+SLI  L K  R      + +++   G  P+ + +NALI G C   + + AF +L
Sbjct: 445 TLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALL 504

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
            EM  +    + ++YN ++ G C++GK
Sbjct: 505 KEMDKRNIVPDEVTYNTLMQGRCREGK 531



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 115/219 (52%), Gaps = 9/219 (4%)

Query: 131 CGKLDRMKELFQ----IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
           C +L R  + F+    + EK V P   ++N ++   +   + E  W ++ EM + +++ T
Sbjct: 176 CCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKST 235

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYN--VKPDGQVFASLIKGLCAVGELSLALG 244
           + TF  +I  LC E ++ +A   K+ I  + N  VKP+   + ++I G C+ G +  A  
Sbjct: 236 VYTFNIMINVLCKEGKLKKA---KDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARM 292

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           V + M    +E D+  Y SLIS + K G+  E   IL++MKE G  P +VTYN LI G+C
Sbjct: 293 VLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYC 352

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + D   AF   DEM  +       +YN+++  L  +GK
Sbjct: 353 NKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGK 391



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 119/266 (44%), Gaps = 44/266 (16%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+L+I  L      DE   ++  +  D+ IVP  I +  +I  Y R    ++A  + DEM
Sbjct: 379 YNLLIHALFLEGKMDEADGMIKDMG-DSGIVPDSITYNILINGYCRCGNAKKAFNLHDEM 437

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV----SPDACSYNILIHGCVVS 165
            S  +Q T+  + +L+       K +RMK    + EK +    SPD   +N LI G   +
Sbjct: 438 ISKGIQPTLVTYTSLI---YVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCAN 494

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD--- 222
             L+ A+ +  EM KR + P  VT+ TL+ G C E +V+EA +L +++ R   ++PD   
Sbjct: 495 GNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKR-RGIRPDHIS 553

Query: 223 -----------GQV---------------------FASLIKGLCAVGELSLALGVKEEMV 250
                      G +                     + +LI+GLC   +  LA  + +EMV
Sbjct: 554 YNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMV 613

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNE 276
              I  D   Y SLI  + K    +E
Sbjct: 614 SKGITPDDSTYFSLIEGIGKVDDSSE 639



 Score = 44.7 bits (104), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 6/110 (5%)

Query: 240 SLALGVKE-----EMVRDKIEMDAGI-YSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           S   GVK+      + RD++   + I +  LI A  +  R ++       MKE+G  P  
Sbjct: 142 SRVAGVKDVFHELAITRDRLGTKSSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKI 201

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            T+NA++S F K    E  + +  EM     K+   ++N+++  LCK+GK
Sbjct: 202 ETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGK 251


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 161/296 (54%), Gaps = 5/296 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQMFDE 108
           YDL+I      K  D+  +    +K    ++P  +  CN ++  + ++   E+A  ++ E
Sbjct: 124 YDLLIRACCELKRGDDAFECFDMMK-GKGVIP-HVHACNDMLSLFLKSNRTEKAWVLYAE 181

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRR 167
           M    ++ +V  FN ++N     GKL + KE   +ME   + P+  +YN +IHG     R
Sbjct: 182 MFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGR 241

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           +E A  +FD M  R ++P   T+G+ I G+C E +++EA  + E  M+   ++P    + 
Sbjct: 242 VEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEK-MKEIGLRPTAVTYN 300

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +LI G C  G L +A   +++MVR+ +      Y+ LI ALF   + +E   I+KEM E+
Sbjct: 301 TLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEK 360

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G  P+SVTYN LI+G+C+  + + AFT+ DEM  KG +   ++Y  ++  L K G+
Sbjct: 361 GLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGR 416



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 160/303 (52%), Gaps = 6/303 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           +KP  Y    Y   I+ + +    +E   +L ++K +  + P  + +  +I  Y     L
Sbjct: 257 VKPDSYT---YGSFISGMCKEGKLEEASGMLEKMK-EIGLRPTAVTYNTLIDGYCNKGNL 312

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           E A    D+M    +  TV  +N L++      K+D    + + M EK + PD+ +YNIL
Sbjct: 313 EMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNIL 372

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G      ++ A+ + DEM+ + +QPT VT+ +LIY L    R+ +A  L E I+R   
Sbjct: 373 INGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVR-KG 431

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD  +F +LI G CA G +  A  + +EM + K+  D   +++L+    + G+     
Sbjct: 432 IFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAAR 491

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +++EMK RG KP+ ++YN LISG+ K  D + AF + DEM   G     ++YN ++ GL
Sbjct: 492 ELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGL 551

Query: 339 CKD 341
           CK+
Sbjct: 552 CKN 554



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 145/290 (50%), Gaps = 11/290 (3%)

Query: 56  KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNV 114
           KL +AK F  + + L        I P  + +  +I G+  R R+ E A  +FD M    V
Sbjct: 206 KLKKAKEFIGLMEALG-------IKPNVVTYNTIIHGYCSRGRV-EGARMIFDLMKCRGV 257

Query: 115 QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWK 173
           +     + + ++     GKL+    + + M++  + P A +YN LI G      LE A+ 
Sbjct: 258 KPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFD 317

Query: 174 VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGL 233
             D+MV+  L PT+ T+  LI+ L L+ ++DEA  + ++ M    + PD   +  LI G 
Sbjct: 318 YRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKE-MSEKGLVPDSVTYNILINGY 376

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           C  G +  A  + +EM+   I+     Y+SLI  L K GR  +   + +++  +G  P+ 
Sbjct: 377 CRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDL 436

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + +NALI G C   + + AF +L EM       + +++N ++ G C++GK
Sbjct: 437 IMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGK 486



 Score = 44.7 bits (104), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 14/160 (8%)

Query: 186 TLVTFGTL-IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI-KGLCAVGELSLAL 243
           T + FG L I   CL + V         I    N KP  Q+    I  G+ ++ E+   L
Sbjct: 59  THIGFGDLDIKSKCLAMAV---------ISHAPNSKPSLQLLKETINSGVYSIREVFNEL 109

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
           GV   ++  K  +   +Y  LI A  +  R ++       MK +G  P+    N ++S F
Sbjct: 110 GVARGVLGIKTYV---LYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLF 166

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            K    E A+ +  EM     K++ +++N+++  LCK+GK
Sbjct: 167 LKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGK 206


>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
          Length = 714

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 187/346 (54%), Gaps = 24/346 (6%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L + + DP+ AL++F               + F +N   Y  I+ KL ++K F  +  +L
Sbjct: 136 LIKRETDPQRALEIF---------NRVAEQRGFSHNNATYATILHKLAKSKKFQAIDAVL 186

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF-NVQMTVKFFNTLLN--- 126
           HQ+ ++T     E IF N++  + +  L ER ++MFD +      + ++K  +T LN   
Sbjct: 187 HQMTYETCKF-HEGIFLNLMKHFSKLSLHERVVEMFDAIXPIVREKPSLKAISTCLNLLV 245

Query: 127 ----PKLTC--GKLDRMKELFQIMEK-YVS-PDACSYNILIHGCVVSRRLEDAWKVFDEM 178
                 +T   G +D   E+ + M+K +VS P+  +Y+ LI+G   S RL++A ++F+EM
Sbjct: 246 ESNQSSITAKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEM 305

Query: 179 V-KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           V K ++ P  +T+  LI G C   +VD ALK+ E  M+     P+   +++L+ G C  G
Sbjct: 306 VSKDQILPDALTYNALINGFCHGXKVDRALKIME-FMKKNGCNPNVFNYSALMNGFCKEG 364

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
            L  A  V +EM    ++ D   Y++LI+   +AGR +E   +LK+M E  C+ ++VT+N
Sbjct: 365 RLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENKCRADTVTFN 424

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ++ G C+E  FE A  +L+ +  +G   N  SY ++L  LC++G+
Sbjct: 425 VILGGLCREGRFEEAXGMLERLPYEGVYLNKASYRIVLNSLCREGE 470



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 134/294 (45%), Gaps = 40/294 (13%)

Query: 64  DEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKF-F 121
           D   +++ ++K      P  I +  +I G  G  RL E A+++F+EM S +  +     +
Sbjct: 260 DSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKE-AIELFEEMVSKDQILPDALTY 318

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           N L+N      K+DR  ++ + M+K   +P+  +Y+ L++G     RLE+A +VFDEM  
Sbjct: 319 NALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKS 378

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
             L+P  V + TLI   C   RVDEA++L +D M     + D   F  ++ GLC  G   
Sbjct: 379 LGLKPDTVGYTTLINFFCRAGRVDEAMELLKD-MXENKCRADTVTFNVILGGLCREGRFE 437

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A G+ E +  + + ++   Y  ++++L + G   +   ++  M  RG  P+  T N L+
Sbjct: 438 EAXGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELL 497

Query: 301 S---------------------GF--------------CKEEDFEAAFTILDEM 319
                                 GF              C+E     AF +LD++
Sbjct: 498 VHLCEAGKVGDAVMALLGLLELGFKPEPNSWALLVELICRERKLLPAFELLDDL 551


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 161/304 (52%), Gaps = 5/304 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-IVPKEIIFCNVIGFYGRARLL 99
           +  R N++ Y+ II  L + K+ +E   +  ++  D R I P  I +  +I  +  A  L
Sbjct: 144 RSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEM--DARGIFPNVITYSTLIYGFCLAGQL 201

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
             A  + +EM   N+   V  +  L++     GK+   K L  +M K  V P+  SYN L
Sbjct: 202 MEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTL 261

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           + G  +   +++A ++F  MV++ + P + ++  +I  LC   RVDEA+ L  +++   N
Sbjct: 262 MDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLH-KN 320

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + P+   ++SLI G C +G ++ AL + +EM       D   Y+SL+ AL K    ++  
Sbjct: 321 MVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKAT 380

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           A+  +MKERG +PN  TY ALI G CK    + A  +   +  KGC+ N  +YNV++ GL
Sbjct: 381 ALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGL 440

Query: 339 CKDG 342
           CK+G
Sbjct: 441 CKEG 444



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 135/278 (48%), Gaps = 35/278 (12%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           ++++L   D++ +   QM    + TLLN     G+     +L +++E +   P+   YN 
Sbjct: 96  VKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNT 155

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL---------- 207
           +I G    + + +A+ ++ EM  R + P ++T+ TLIYG CL  ++ EA           
Sbjct: 156 IIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKN 215

Query: 208 -------------------KLKE-----DIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
                              K+KE      +M    VKP+   + +L+ G C +GE+  A 
Sbjct: 216 INPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAK 275

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            +   MV+  +  +   Y+ +I  L K+ R +E   +L+E+  +   PN+VTY++LI GF
Sbjct: 276 QMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGF 335

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           CK     +A  +L EM  +G  A+ ++Y  +L  LCK+
Sbjct: 336 CKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKN 373



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 112/219 (51%), Gaps = 8/219 (3%)

Query: 132 GKLDRMKE------LFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ 184
           G L +MK       LF+ M+ K + PD  + NILI+      ++  ++ V  +++K   Q
Sbjct: 18  GSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLGYQ 77

Query: 185 PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
           P  +T  TL+ GLCL+  V ++L   + ++     + D   +A+L+ GLC +GE   AL 
Sbjct: 78  PNTITLNTLMKGLCLKGEVKKSLHFHDKVV-AQGFQMDQVSYATLLNGLCKIGETRSALK 136

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           +   +       +  +Y+++I  L K    NE   +  EM  RG  PN +TY+ LI GFC
Sbjct: 137 LLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFC 196

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
                  AF +L+EM  K    N  +Y +++  LCK+GK
Sbjct: 197 LAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGK 235



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 99/195 (50%), Gaps = 1/195 (0%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           +P    +N ++   V  +    A  +F +M  + ++P L T   LI   C   ++  +  
Sbjct: 7   TPPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFT 66

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           +   I+++   +P+     +L+KGLC  GE+  +L   +++V    +MD   Y++L++ L
Sbjct: 67  VLGKILKL-GYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGL 125

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K G       +L+ +++R  +PN V YN +I G CK++    A+ +  EM  +G   N 
Sbjct: 126 CKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNV 185

Query: 329 ISYNVILGGLCKDGK 343
           I+Y+ ++ G C  G+
Sbjct: 186 ITYSTLIYGFCLAGQ 200



 Score = 41.2 bits (95), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 84/205 (40%), Gaps = 37/205 (18%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y+++I +L ++K  DE   +L ++ H   +VP  + + ++I  + +   +  AL +
Sbjct: 289 NVYSYNIMIDRLCKSKRVDEAMNLLREVLHKN-MVPNTVTYSSLIDGFCKLGRITSALDL 347

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPD------------- 151
             EM        V  + +LL+       LD+   LF  M E+ + P+             
Sbjct: 348 LKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCK 407

Query: 152 ----------------------ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
                                   +YN++I G      L++A  +  +M +    P  VT
Sbjct: 408 GGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVT 467

Query: 190 FGTLIYGLCLELRVDEALKLKEDIM 214
           F  +I  L  + + D+A KL  +++
Sbjct: 468 FEIIIRSLFEKDQNDKAEKLLHEMI 492


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 154/299 (51%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NLL Y+++I  L R    +E   +L ++       P  + +  ++  Y +     +AL +
Sbjct: 272 NLLTYNMVINGLCRVGRIEETSGVLAEMDRKG-FAPDGVTYNTLVNGYCKVGNFHQALVL 330

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             EM    +   V  + +L+N     G L+R  E F Q+  + + P+  +Y  LI+G   
Sbjct: 331 HSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQ 390

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +++A++++DEM++    PT+VT+  L+ G C+  R++EA+ L    M    + PD  
Sbjct: 391 KGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRG-MEGKGLSPDVV 449

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++++I G C   EL  A  +  EMV   +  DA  YSSLI  L +  R NE   + +EM
Sbjct: 450 SYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEM 509

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +   P+  TY +LI+G+CKE D   A  + DEM  KG   + ++YNV++ GL K  +
Sbjct: 510 LNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQAR 568



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 158/314 (50%), Gaps = 18/314 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I  + +A   +   +   Q+ H   + P  + + ++I  + +   ++ A ++
Sbjct: 342 DVVTYTSLINTMCKAGNLNRAMEFFDQM-HVRGLRPNGVTYTSLINGFSQKGFMDEAYRI 400

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           +DEM       T+  +N LLN     G+++    L + ME K +SPD  SY+ +I G   
Sbjct: 401 WDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCR 460

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            + L+ A+++  EMV++ + P  +T+ +LI GLC + R++EA  L ++++   ++ PD  
Sbjct: 461 YQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLN-KSLLPDEF 519

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SLI G C  G+L+ AL + +EM++     D   Y+ LI+ L K  R  E   +L ++
Sbjct: 520 TYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKL 579

Query: 285 KERGCKPNSVTYN---------------ALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
                 PN +TY+               ALI GFC +     A  + + M  +  K N  
Sbjct: 580 FYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEA 639

Query: 330 SYNVILGGLCKDGK 343
            YNVI+ G C+DG 
Sbjct: 640 VYNVIIHGHCRDGN 653



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 127/243 (52%), Gaps = 2/243 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIH 160
           A +++ EM +  V + V  +N L+      G L+     F+ ME+    P+  +YN +I 
Sbjct: 187 AEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIG 246

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                +R+++A+K+   M    L+P L+T+  +I GLC   R++E   +  ++ R     
Sbjct: 247 AYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDR-KGFA 305

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PDG  + +L+ G C VG    AL +  EM+R+ +  D   Y+SLI+ + KAG  N     
Sbjct: 306 PDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEF 365

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             +M  RG +PN VTY +LI+GF ++   + A+ I DEM   G     ++YN +L G C 
Sbjct: 366 FDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCV 425

Query: 341 DGK 343
            G+
Sbjct: 426 SGR 428



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 121/246 (49%), Gaps = 8/246 (3%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----VSPDACS 154
           LE  L+ F+EM        V  +NT++       KL R+ E F+++       + P+  +
Sbjct: 219 LEMGLRFFEEMERNRCLPNVVTYNTVIGAYC---KLKRIDEAFKLLRSMGLEGLEPNLLT 275

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YN++I+G     R+E+   V  EM ++   P  VT+ TL+ G C      +AL L  +++
Sbjct: 276 YNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEML 335

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           R   + PD   + SLI  +C  G L+ A+   ++M    +  +   Y+SLI+   + G  
Sbjct: 336 R-NGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFM 394

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +E   I  EM   G  P  VTYNAL++G C     E A  +L  M  KG   + +SY+ I
Sbjct: 395 DEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTI 454

Query: 335 LGGLCK 340
           + G C+
Sbjct: 455 IAGFCR 460



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 4/123 (3%)

Query: 132 GKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           G ++   ++F+ M ++   P+   YN++IHG      +  A K++ EMV     P  VT 
Sbjct: 617 GLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTI 676

Query: 191 GTLIYGLCLELRVDEALKLK-EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
             L+  L  E  +DE L L   DI+R   +  D ++  +L++     G +     +  EM
Sbjct: 677 IALVKALYSE-GMDEQLNLVIRDILRSCKLS-DAELSKALVQINHKEGNIDAVFNLLTEM 734

Query: 250 VRD 252
            +D
Sbjct: 735 AKD 737


>gi|255580552|ref|XP_002531100.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529296|gb|EEF31265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 483

 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 179/329 (54%), Gaps = 13/329 (3%)

Query: 16  KDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 75
           +DP  AL LF +   N           FR++   Y  ++ KL R++ F+ ++ +L  L+ 
Sbjct: 59  EDPDKALSLFHDYLQNG----------FRHDYPSYSALVYKLARSRRFEAVETVLGYLQ- 107

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           D  +  ++ +F  +   YG+  L+ +A+++F+EM+ FN   T++ FN LLN  +   +L 
Sbjct: 108 DFNVRCRDTLFIALFEHYGKVGLVAKAIRLFNEMTGFNCIRTLQSFNALLNVLVDNDRLF 167

Query: 136 RMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
             K+LF +  E     ++  +NILI G +       A KVFDEM++R+++P++VT+ +LI
Sbjct: 168 DAKQLFDRSSEMGFRLNSVPFNILIKGWLKKGEWYQAGKVFDEMLERKVEPSVVTYNSLI 227

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
             LC    + +A  L +D+++    +P+   +A L++GLC++GE   A  +  +M     
Sbjct: 228 GYLCRNGELGKAKGLFKDMIKK-GKRPNAVTYALLMEGLCSMGEYKEAKKMLFDMEYRGC 286

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           +     +  L++ L K G+  E   +L EMK+R  +P+ V YN LI+  CKE     A+ 
Sbjct: 287 KPKNLNFGVLMNDLGKKGKIEEAKLLLLEMKKRRFRPDVVIYNILINHLCKEGKVAEAYK 346

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
            L EM   GC+AN  +Y ++  G C+ G+
Sbjct: 347 TLFEMQIGGCEANAATYRMLADGFCQVGE 375


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 155/304 (50%), Gaps = 38/304 (12%)

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           D  + P+  +F  ++  + R   L  A ++FDEM   +VQ TV  FNTL++       LD
Sbjct: 179 DAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRR-SVQPTVVTFNTLISGMCRARDLD 237

Query: 136 RMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
            +  L++ M    V PD  +Y  LI G   + R+E+A K+F+EM    + P  V F TLI
Sbjct: 238 AVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLI 297

Query: 195 YGLCLELRVDEALKLKEDIMRV---------YN--------------------------V 219
              C E  V+  + L +D MRV         YN                          +
Sbjct: 298 DAHCKEGNVNAGMDLYQD-MRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGL 356

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           KPD   + +LI G C  G+L +A+ +K++M   ++ +D   Y++LIS L KAGR  +   
Sbjct: 357 KPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAER 416

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +L+EM E   +P++ TY  +I  FC++ D +  F +L EM +KG K   ++YNVI+ GLC
Sbjct: 417 VLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLC 476

Query: 340 KDGK 343
           K G+
Sbjct: 477 KLGQ 480



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 153/299 (51%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            ++ ++ +I+ + RA+  D +  +  ++  D  + P    +  +I  + R   +E A++M
Sbjct: 219 TVVTFNTLISGMCRARDLDAVDGLYKEMS-DVGVKPDVYTYGALIKGFCRTGRMENAVKM 277

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           F+EM    V      F TL++     G ++   +L+Q M  + V PD  +YN L++G   
Sbjct: 278 FNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCR 337

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +R L+ A  + +EM    L+P  VT+ TLI G C + ++D A+ +K+  M    V  D  
Sbjct: 338 ARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQK-MAEKEVSLDEV 396

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI GL   G    A  V  EM+   +E D   Y+ +I A  + G       +LKEM
Sbjct: 397 TYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEM 456

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + +G KP  VTYN +++G CK    + A  +L  M + G   + I+YN++L G CK GK
Sbjct: 457 QNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGK 515


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/282 (34%), Positives = 144/282 (51%), Gaps = 39/282 (13%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSY 155
           +  A  +F E+    ++ TV  FNTL+N     G LD   R+K    +ME  V PD  +Y
Sbjct: 241 INEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRF--MMENRVFPDVFTY 298

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           ++LI+G     +L+DA K+F EM  R L P  VTF TLI G C+  R D  +++ + ++R
Sbjct: 299 SVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLR 358

Query: 216 --------VYN--------------------------VKPDGQVFASLIKGLCAVGELSL 241
                    YN                          +KPD   +  LI G C  G+L  
Sbjct: 359 KGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLES 418

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           AL +++EMV++ IE+D   +++LIS   + G+  E    L+EM E G KP+  TY  +I 
Sbjct: 419 ALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIH 478

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           GFCK+ D +  F +L EM   G     ++YNV+L GLCK G+
Sbjct: 479 GFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQ 520



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 144/305 (47%), Gaps = 55/305 (18%)

Query: 84  IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELF- 141
           ++F  ++  Y  +     A+Q F  +   N+Q+          P  +CG L DR+ +L  
Sbjct: 156 LVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQI----------PFHSCGYLFDRLMKLNL 205

Query: 142 ---------QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
                    +I++    PD C +N+L+H      ++ +A  +F E+ KR L+PT+V+F T
Sbjct: 206 TSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNT 265

Query: 193 LIYGLCLELRVDEALKLKEDIM--RVY--------------------------------N 218
           LI G C    +D+  +LK  +M  RV+                                 
Sbjct: 266 LINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRG 325

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + P+   F +LI G C  G   L + + ++M+R  ++ D   Y++LI+ L K G   E  
Sbjct: 326 LVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAK 385

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            ++ EM +RG KP+  TY  LI G CKE D E+A  I  EM  +G + + +++  ++ G 
Sbjct: 386 KLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGF 445

Query: 339 CKDGK 343
           C++G+
Sbjct: 446 CREGQ 450



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY---GRARLLERA 102
           ++  Y ++I  L +    D+  ++  ++  D  +VP ++ F  +I  +   GRA L    
Sbjct: 294 DVFTYSVLINGLCKEGQLDDANKLFLEMC-DRGLVPNDVTFTTLINGHCVTGRADL---G 349

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIHG 161
           ++++ +M    V+  V  +NTL+N     G L   K+L  ++ ++ + PD  +Y +LI G
Sbjct: 350 MEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDG 409

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
           C     LE A ++  EMVK  ++   V F  LI G C E +V EA +   +++    +KP
Sbjct: 410 CCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEA-GIKP 468

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   +  +I G C  G++     + +EM  D        Y+ L++ L K G+      +L
Sbjct: 469 DDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLL 528

Query: 282 KEMKERGCKPNSVTYNALISGFCKE---EDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             M   G  P+ +TYN L+ G CK    EDF+          +KG   +  SY  ++G L
Sbjct: 529 DAMLNLGVVPDDITYNILLEGHCKHGNREDFDKL------QSEKGLVQDYGSYTSLIGDL 582

Query: 339 CKDGK 343
            K  K
Sbjct: 583 RKTCK 587


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/282 (34%), Positives = 144/282 (51%), Gaps = 39/282 (13%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSY 155
           +  A  +F E+    ++ TV  FNTL+N     G LD   R+K    +ME  V PD  +Y
Sbjct: 241 INEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRF--MMENRVFPDVFTY 298

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           ++LI+G     +L+DA K+F EM  R L P  VTF TLI G C+  R D  +++ + ++R
Sbjct: 299 SVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLR 358

Query: 216 --------VYN--------------------------VKPDGQVFASLIKGLCAVGELSL 241
                    YN                          +KPD   +  LI G C  G+L  
Sbjct: 359 KGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLES 418

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           AL +++EMV++ IE+D   +++LIS   + G+  E    L+EM E G KP+  TY  +I 
Sbjct: 419 ALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIH 478

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           GFCK+ D +  F +L EM   G     ++YNV+L GLCK G+
Sbjct: 479 GFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQ 520



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 144/307 (46%), Gaps = 55/307 (17%)

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKEL 140
             ++F  ++  Y  +     A+Q F  +   N+Q+          P  +CG L DR+ +L
Sbjct: 154 SNLVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQI----------PFHSCGYLFDRLMKL 203

Query: 141 F----------QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
                      +I++    PD C +N+L+H      ++ +A  +F E+ KR L+PT+V+F
Sbjct: 204 NLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSF 263

Query: 191 GTLIYGLCLELRVDEALKLKEDIM--RVY------------------------------- 217
            TLI G C    +D+  +LK  +M  RV+                               
Sbjct: 264 NTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCD 323

Query: 218 -NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             + P+   F +LI G C  G   L + + ++M+R  ++ D   Y++LI+ L K G   E
Sbjct: 324 RGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLRE 383

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              ++ EM +RG KP+  TY  LI G CKE D E+A  I  EM  +G + + +++  ++ 
Sbjct: 384 AKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALIS 443

Query: 337 GLCKDGK 343
           G C++G+
Sbjct: 444 GFCREGQ 450


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 162/327 (49%), Gaps = 30/327 (9%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ ++    +    DE +++L  +    R  P  I +  +IG + RA  L  A ++
Sbjct: 266 DVVTYNSLMDGFCKVSKMDEAERLLEDMVG-RRCAPTVITYTTLIGGFSRADRLADAYRV 324

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            ++M    +   +  +N LL+     GKL+   EL ++M EK  +PD  +Y+IL++G   
Sbjct: 325 MEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCK 384

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE------------- 211
             +++DA  + + M++R  QP LVTF T+I G C   +VDE  K+ E             
Sbjct: 385 LGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVT 444

Query: 212 ---------------DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
                          D   +  + PD   ++S+++GLC+ G++  A  V + M +     
Sbjct: 445 YSTLIDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPP 504

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
            +  Y+ +I  L    R +E   +L+ M ERGC+PN  TY+ LI+G CK +  E A  +L
Sbjct: 505 TSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVL 564

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
           D M +KGC  +  +Y  ++ G CK  K
Sbjct: 565 DVMLEKGCVPDVATYTSLIDGFCKINK 591



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 149/303 (49%), Gaps = 8/303 (2%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           + P KP       Y  +IT   RA     + +I +++    R  P  I    ++  Y + 
Sbjct: 17  SDPSKPSNST---YGALITGFSRAGNSKMVLEIANEMLA-RRFSPDVITHNTILKAYCQI 72

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSY 155
             L+RAL  F          T   +  L++    C ++D   +L  ++++K   PDA  Y
Sbjct: 73  GDLDRALSHF--RGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVY 130

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N LI G     +++ A  V   M++R   P ++T+ +LI G C    +DEA KL E  M+
Sbjct: 131 NCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEK-MK 189

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
              + PD   + +L+ GLC   +L     + EEMV    E D   Y+++++ L ++G+  
Sbjct: 190 ESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYE 249

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E   IL++M E+ C P+ VTYN+L+ GFCK    + A  +L++M  + C    I+Y  ++
Sbjct: 250 EAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLI 309

Query: 336 GGL 338
           GG 
Sbjct: 310 GGF 312



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 136/263 (51%), Gaps = 2/263 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    +  +I  + RA   +  L++ +EM +      V   NT+L      G LDR    
Sbjct: 22  PSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSH 81

Query: 141 FQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
           F+  + + SP A +Y ILIHG    +R+++A+++ DEM+++   P    +  LI GLC  
Sbjct: 82  FR-GKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKM 140

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            ++D A  + + +M   +  PD   + SLI G C    L  A  + E+M    +  D   
Sbjct: 141 GKIDAARNVLK-MMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVA 199

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
           Y++L++ L K  +  E   +L+EM E G +P++ +YN +++  C+   +E A  IL++M 
Sbjct: 200 YNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMI 259

Query: 321 DKGCKANPISYNVILGGLCKDGK 343
           +K C  + ++YN ++ G CK  K
Sbjct: 260 EKKCGPDVVTYNSLMDGFCKVSK 282



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 151/302 (50%), Gaps = 13/302 (4%)

Query: 36  EAHPL------KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNV 89
           EAH L      K    +++ Y +++  L +    D+  ++L ++  +    P  + F  +
Sbjct: 355 EAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDD-ARLLLEMMLERGCQPNLVTFNTM 413

Query: 90  IGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS 149
           I  + +A  ++   ++ + M   +    V  ++TL++      K +RM++ F I+   +S
Sbjct: 414 IDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYC---KANRMQDAFAILG--IS 468

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PD  SY+ ++ G   + ++E+A +V D M K+   PT   +  +I GLC   R DEALK+
Sbjct: 469 PDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKM 528

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            + +M     +P+   ++ LI GLC    +  A+ V + M+      D   Y+SLI    
Sbjct: 529 LQ-VMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFC 587

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           K  + +      K M++ GC+P+ + YN LISGFC+  + E A  ++  M +KGC  +  
Sbjct: 588 KINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAA 647

Query: 330 SY 331
           +Y
Sbjct: 648 TY 649



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 145/314 (46%), Gaps = 35/314 (11%)

Query: 65  EMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124
           ++ + L   +      P    +C +I    + + ++ A Q+ DEM   +       +N L
Sbjct: 74  DLDRALSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCL 133

Query: 125 LNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
           +      GK+D  + + ++M E+   PD  +Y  LI GC  +  L++A K+ ++M +  L
Sbjct: 134 IAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGL 193

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV--------YNV---------------- 219
            P  V +  L+ GLC + +++E  KL E+++          YN                 
Sbjct: 194 TPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGK 253

Query: 220 ----------KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
                      PD   + SL+ G C V ++  A  + E+MV  +       Y++LI    
Sbjct: 254 ILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFS 313

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           +A R  +   ++++M + G  P+ VTYN L+ G CK    E A  +L+ M +K C  + +
Sbjct: 314 RADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVV 373

Query: 330 SYNVILGGLCKDGK 343
           +Y++++ GLCK GK
Sbjct: 374 TYSILVNGLCKLGK 387



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 124/262 (47%), Gaps = 9/262 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ ++ +I    +A   DE  ++L  +K +    P  + +  +I  Y +A       +M
Sbjct: 406 NLVTFNTMIDGFCKAGKVDEGHKVLELMK-EVSCTPDVVTYSTLIDGYCKAN------RM 458

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACS-YNILIHGCVV 164
            D  +   +      ++++L    + GK++  +E+  +M K   P   S Y ++I G   
Sbjct: 459 QDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCD 518

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R ++A K+   M +R  +P L T+  LI GLC   RV++A+ +  D+M      PD  
Sbjct: 519 VERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVL-DVMLEKGCVPDVA 577

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SLI G C + ++  A    + M     E D   Y+ LIS   ++G   +   +++ M
Sbjct: 578 TYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLM 637

Query: 285 KERGCKPNSVTYNALISGFCKE 306
            E+GC P++ TY +L+     E
Sbjct: 638 LEKGCNPDAATYFSLMRSLTTE 659



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 2/124 (1%)

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           KP    + +LI G    G   + L +  EM+  +   D   +++++ A  + G  +   A
Sbjct: 21  KPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDR--A 78

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +     +  C P + TY  LI G C+ +  + A+ +LDEM  K C  +   YN ++ GLC
Sbjct: 79  LSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLC 138

Query: 340 KDGK 343
           K GK
Sbjct: 139 KMGK 142


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 139/280 (49%), Gaps = 35/280 (12%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
           L  A  +FDEM S  V+ TV  FNT+++     G LD  + L + M E  V+PD  +Y  
Sbjct: 256 LASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGA 315

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI---- 213
           LI G     R+EDA  VF++M  R ++P  V F  LI   C +   +  L+L  ++    
Sbjct: 316 LIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERG 375

Query: 214 ------------------------------MRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
                                         MR   ++PD   + +LI G C   EL +A+
Sbjct: 376 VRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAM 435

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            +K+ MV + + +D   Y++LIS L KAGR  +   +L EM E G +P++ TY  +I  F
Sbjct: 436 EIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAF 495

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C++ D +    +L EM +KG K   ++YNVI+ G CK G+
Sbjct: 496 CRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQ 535



 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 155/304 (50%), Gaps = 3/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +  R  ++ ++ +I+ + RA   D   + LH+   +  + P    +  +I    R   +E
Sbjct: 269 RGVRRTVVSFNTMISGMCRAGDLDG-AETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIE 327

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            A  +F++M    ++     F  L++     G  + M EL + M E+ V PDA +YN ++
Sbjct: 328 DARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIV 387

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +G   +R L+ A  +  EM    L+P  VT+ TLI G C E  +D A+++K++ M    V
Sbjct: 388 NGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQN-MVAEGV 446

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
             D   + +LI GL   G  + A  V  EM+   +E D   Y+ +I A  + G       
Sbjct: 447 GLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLR 506

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +LKEM+ +G KP  VTYN +++GFCK    + A  +L+ M + G   + I+YN++L G C
Sbjct: 507 LLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHC 566

Query: 340 KDGK 343
           K GK
Sbjct: 567 KHGK 570



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 115/201 (57%), Gaps = 1/201 (0%)

Query: 141 FQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
            Q+++  + P+A  +N+L+   V    L  A  VFDEM  R ++ T+V+F T+I G+C  
Sbjct: 229 LQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRA 288

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
             +D A  L    M    V PD   + +LI+GLC VG +  A GV E+M    ++ +A +
Sbjct: 289 GDLDGAETLHRR-MSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVV 347

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
           ++ LI A  K G       + +EM+ERG +P++VTYNA+++G C+  D ++A  I+ EM 
Sbjct: 348 FTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMR 407

Query: 321 DKGCKANPISYNVILGGLCKD 341
             G + + ++Y  ++ G CK+
Sbjct: 408 SAGLRPDTVTYTTLIDGYCKE 428



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 64/122 (52%)

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+ ++F  L++ L  +GEL+ A  V +EM    +      ++++IS + +AG  +    +
Sbjct: 238 PEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETL 297

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            + M E G  P+  TY ALI G C+    E A  + ++M  +G K N + + +++   CK
Sbjct: 298 HRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCK 357

Query: 341 DG 342
            G
Sbjct: 358 KG 359



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 46/87 (52%)

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +A +++ L+  L + G       +  EM+ RG +   V++N +ISG C+  D + A T+ 
Sbjct: 239 EAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLH 298

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
             M + G   +  +Y  ++ GLC+ G+
Sbjct: 299 RRMSEAGVTPDVYTYGALIQGLCRVGR 325



 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++ + G  P +  +N L+    +  +  +A  + DEM  +G +   +S+N ++ G+C+ G
Sbjct: 230 QLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAG 289


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 167/346 (48%), Gaps = 17/346 (4%)

Query: 7   RLACLPRLQKDPKLALQLFKNPNPNP-----NDTEAHPLKPFRYNLLHYDLIITKLGRAK 61
           RL C P  +    + L L +    +      ++ EA  + P  ++   Y ++I  L +A 
Sbjct: 143 RLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWS---YGILIDGLAKAG 199

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
             +E  ++  ++  D+ I P  + +  VI     A  L+ AL++F  M S   + +   F
Sbjct: 200 KLNEAYKLFQRML-DSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTF 258

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDE 177
           N L++     GKLD   E F+++++       PD  +Y+ LI G     R++DA  + ++
Sbjct: 259 NILIDAHCKRGKLD---EAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLED 315

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           MVKR+ +PT+VT  TLI+GLC   R+ EA ++  D M      PD   + +L+ G C  G
Sbjct: 316 MVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVL-DAMVSSGQSPDVVTYNTLVHGHCRAG 374

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           +   A  +  +MV   +  +   Y++L+S L KA R  E   +  +MK  GC PN  TY 
Sbjct: 375 QTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYT 434

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           ALI GFC     +    +  EM   G   + + Y  +   LCK G+
Sbjct: 435 ALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGR 480



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 130/270 (48%), Gaps = 2/270 (0%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           ++  + P    +  +I    +A  L  A  +F ++    V  +   + +L++        
Sbjct: 2   NERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSF 61

Query: 135 DRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           D  +ELF  M +    P   +YN++I        LE+A  +  +M++    P +VT+ T+
Sbjct: 62  DDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTV 121

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           + GLC   RV+EAL L  ++ R+    P+ +   ++I GLC   ++  A  V  EM    
Sbjct: 122 MDGLCKSSRVEEALLLFNEMERL-GCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           I  D+  Y  LI  L KAG+ NE   + + M + G  P++VTYN +I G C     + A 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +   M  KGC+ +  ++N+++   CK GK
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGK 270



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 145/339 (42%), Gaps = 50/339 (14%)

Query: 21  ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
           AL+LFK+         +   +P R+    ++++I    +    DE  ++L ++  D   V
Sbjct: 239 ALELFKS-------MRSKGCRPSRFT---FNILIDAHCKRGKLDEAFRLLKRMTDDGH-V 287

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  +I        ++ A  + ++M     + TV   NTL++     G++   +E+
Sbjct: 288 PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV 347

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
              M     SPD  +YN L+HG   + + E A ++  +MV R L P +VT+  L+ GLC 
Sbjct: 348 LDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCK 407

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R+ EA  +    M+     P+   + +LI G C+ G++   L +  EMV   I  D  
Sbjct: 408 ANRLPEACGVFAQ-MKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHV 466

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKE--------------------------------- 286
           +Y +L + L K+GR      IL+E +E                                 
Sbjct: 467 VYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVR 526

Query: 287 ---RGCK-PNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
              RG + P      +L++G CK      A  +L+E+ D
Sbjct: 527 DMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMD 565



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 66/130 (50%)

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M   NV PD   +  LI GL   G+L+ A  + ++++   +      Y+SLI  L  A  
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            ++   +  +M  RGC P+ VTYN +I   CK    E A  ++ +M + G   + ++YN 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 334 ILGGLCKDGK 343
           ++ GLCK  +
Sbjct: 121 VMDGLCKSSR 130


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 152/306 (49%), Gaps = 3/306 (0%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
            LK    NL+ Y+++I  L R     E  +IL ++    R VP  + F  +I  Y     
Sbjct: 265 ALKGLNPNLISYNVVINGLCREGQMKETSEILEEMS-KRRYVPDRVTFNTLINGYCNVGN 323

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
             +AL +  EM    +   V  + TL+N     G L+R  E   Q+ ++ + P+  +Y  
Sbjct: 324 FHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTT 383

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G      L+ A+++  EMV+    PT++T+  LI G C+  R+++A  L ++++   
Sbjct: 384 LIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIE-R 442

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
              PD   ++++I G C   EL  A  +K EMV   I  D   YSSLI  L K  R  E 
Sbjct: 443 GFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEV 502

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + +EM   G  P+ VTY +LI+ +C E D + A  + DEM  KG   + ++YNV++ G
Sbjct: 503 CDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLING 562

Query: 338 LCKDGK 343
             K  +
Sbjct: 563 FNKQSR 568



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 149/296 (50%), Gaps = 4/296 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL-LERALQMFDE 108
           +DL++    R  + ++   I++ L      +P  + +  ++    R +  ++ A  +F E
Sbjct: 135 FDLVVKSCARVNLINKALSIVN-LAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKE 193

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRR 167
           M    V   V  +N L+    T G L+     F  ME+    P+  +YN +I      R+
Sbjct: 194 MVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRK 253

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           + +A+K+   M  + L P L+++  +I GLC E ++ E  ++ E++ +   V PD   F 
Sbjct: 254 IGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV-PDRVTFN 312

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +LI G C VG    AL +  EMV++ +  +   Y++LI+++ KAG  N     L +M++R
Sbjct: 313 TLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDR 372

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G  PN  TY  LI GF ++   + A+ I+ EM + G     I+YN ++ G C  G+
Sbjct: 373 GLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGR 428



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 151/313 (48%), Gaps = 18/313 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  + +A   +   + L Q++ D  + P    +  +I  + +   L++A Q+
Sbjct: 342 NVVTYTTLINSMCKAGNLNRAMEFLDQMR-DRGLHPNGRTYTTLIDGFSQQGFLKQAYQI 400

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
             EM       T+  +N L+N     G+++    L Q ++E+   PD  SY+ +I G   
Sbjct: 401 MKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCR 460

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           ++ LE A+++  EMV + + P + T+ +LI GLC + R+ E   L ++++ +  + PD  
Sbjct: 461 NQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSL-GLPPDEV 519

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SLI   C  G+L  AL + +EM++     D   Y+ LI+   K  R  E   +L ++
Sbjct: 520 TYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKL 579

Query: 285 KERGCKPNSVTYN---------------ALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
                 PN +TYN               AL+ GFC +     A  +L+ M  KG K N  
Sbjct: 580 LYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEE 639

Query: 330 SYNVILGGLCKDG 342
            YNVI+ G  K G
Sbjct: 640 VYNVIIHGHSKVG 652



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 15/242 (6%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           +P  + +  +I  + R + LE+A Q+  EM +  +   V  +++L+       +L  + +
Sbjct: 445 IPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCD 504

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           LFQ M    + PD  +Y  LI+   +   L+ A ++ DEM+++   P +VT+  LI G  
Sbjct: 505 LFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFN 564

Query: 199 LELRVDEALKLKEDIMR--------VYNVKPDG------QVFASLIKGLCAVGELSLALG 244
            + R  EA +L   ++          YN   D       +   +L+KG C  G ++ A  
Sbjct: 565 KQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADR 624

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           V E M++   +++  +Y+ +I    K G   +   + KEM   G  P+SVT  AL     
Sbjct: 625 VLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLY 684

Query: 305 KE 306
            E
Sbjct: 685 HE 686


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 152/306 (49%), Gaps = 3/306 (0%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
            LK    NL+ Y+++I  L R     E  +IL ++    R VP  + F  +I  Y     
Sbjct: 265 ALKGLNPNLISYNVVINGLCREGQMKETSEILEEMS-KRRYVPDRVTFNTLINGYCNVGN 323

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
             +AL +  EM    +   V  + TL+N     G L+R  E   Q+ ++ + P+  +Y  
Sbjct: 324 FHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTT 383

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G      L+ A+++  EMV+    PT++T+  LI G C+  R+++A  L ++++   
Sbjct: 384 LIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIE-R 442

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
              PD   ++++I G C   EL  A  +K EMV   I  D   YSSLI  L K  R  E 
Sbjct: 443 GFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEV 502

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + +EM   G  P+ VTY +LI+ +C E D + A  + DEM  KG   + ++YNV++ G
Sbjct: 503 CDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLING 562

Query: 338 LCKDGK 343
             K  +
Sbjct: 563 FNKQSR 568



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 149/296 (50%), Gaps = 4/296 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL-LERALQMFDE 108
           +DL++    R  + ++   I++ L      +P  + +  ++    R +  ++ A  +F E
Sbjct: 135 FDLVVKSCARVNLINKALSIVN-LAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKE 193

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRR 167
           M    V   V  +N L+    T G L+     F  ME+    P+  +YN +I      R+
Sbjct: 194 MVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRK 253

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           + +A+K+   M  + L P L+++  +I GLC E ++ E  ++ E++ +   V PD   F 
Sbjct: 254 IGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV-PDRVTFN 312

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +LI G C VG    AL +  EMV++ +  +   Y++LI+++ KAG  N     L +M++R
Sbjct: 313 TLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDR 372

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G  PN  TY  LI GF ++   + A+ I+ EM + G     I+YN ++ G C  G+
Sbjct: 373 GLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGR 428



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 151/313 (48%), Gaps = 18/313 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  + +A   +   + L Q++ D  + P    +  +I  + +   L++A Q+
Sbjct: 342 NVVTYTTLINSMCKAGNLNRAMEFLDQMR-DRGLHPNGRTYTTLIDGFSQQGFLKQAYQI 400

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
             EM       T+  +N L+N     G+++    L Q ++E+   PD  SY+ +I G   
Sbjct: 401 MKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCR 460

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           ++ LE A+++  EMV + + P + T+ +LI GLC + R+ E   L ++++ +  + PD  
Sbjct: 461 NQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSL-GLPPDEV 519

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SLI   C  G+L  AL + +EM++     D   Y+ LI+   K  R  E   +L ++
Sbjct: 520 TYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKL 579

Query: 285 KERGCKPNSVTYN---------------ALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
                 PN +TYN               AL+ GFC +     A  +L+ M  KG K N  
Sbjct: 580 LYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEE 639

Query: 330 SYNVILGGLCKDG 342
            YNVI+ G  K G
Sbjct: 640 VYNVIIHGHSKVG 652



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 15/242 (6%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           +P  + +  +I  + R + LE+A Q+  EM +  +   V  +++L+       +L  + +
Sbjct: 445 IPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCD 504

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           LFQ M    + PD  +Y  LI+   +   L+ A ++ DEM+++   P +VT+  LI G  
Sbjct: 505 LFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFN 564

Query: 199 LELRVDEALKLKEDIMR--------VYNVKPDG------QVFASLIKGLCAVGELSLALG 244
            + R  EA +L   ++          YN   D       +   +L+KG C  G ++ A  
Sbjct: 565 KQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADR 624

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           V E M++   +++  +Y+ +I    K G   +   + KEM   G  P+SVT  AL     
Sbjct: 625 VLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLY 684

Query: 305 KE 306
            E
Sbjct: 685 HE 686


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 139/284 (48%), Gaps = 35/284 (12%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDAC 153
           R+  L  A  MFDEM    V  TV  FNTL++       L+    L  +M K  V+PD  
Sbjct: 256 RSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVY 315

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +Y   + G   + R++DA ++F+EM +R + P  V F TLI   C E  V   L+L  ++
Sbjct: 316 TYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREM 375

Query: 214 ----------------------------------MRVYNVKPDGQVFASLIKGLCAVGEL 239
                                             MR   +KPD   + +LI G C  GEL
Sbjct: 376 ATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGEL 435

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
            +A+ +K+EM  + + +D   Y++LIS L K+GR  +   IL EM E G +P++ TY  +
Sbjct: 436 DMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMV 495

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I  FCK  D +  F +L EM +KG K   ++YNV++ G C  G+
Sbjct: 496 IDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQ 539


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 139/280 (49%), Gaps = 35/280 (12%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
           L  A  +FDEM S  V+ TV  FNT+++     G LD  + L + M E  V+PD  +Y  
Sbjct: 132 LASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGA 191

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI---- 213
           LI G     R+EDA  VF++M  R ++P  V F  LI   C +   +  L+L  ++    
Sbjct: 192 LIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERG 251

Query: 214 ------------------------------MRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
                                         MR   ++PD   + +LI G C   EL +A+
Sbjct: 252 VRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAM 311

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            +K+ MV + + +D   Y++LIS L KAGR  +   +L EM E G +P++ TY  +I  F
Sbjct: 312 EIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAF 371

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C++ D +    +L EM +KG K   ++YNVI+ G CK G+
Sbjct: 372 CRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQ 411



 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 155/304 (50%), Gaps = 3/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +  R  ++ ++ +I+ + RA   D   + LH+   +  + P    +  +I    R   +E
Sbjct: 145 RGVRRTVVSFNTMISGMCRAGDLDG-AETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIE 203

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            A  +F++M    ++     F  L++     G  + M EL + M E+ V PDA +YN ++
Sbjct: 204 DARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIV 263

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +G   +R L+ A  +  EM    L+P  VT+ TLI G C E  +D A+++K++ M    V
Sbjct: 264 NGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQN-MVAEGV 322

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
             D   + +LI GL   G  + A  V  EM+   +E D   Y+ +I A  + G       
Sbjct: 323 GLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLR 382

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +LKEM+ +G KP  VTYN +++GFCK    + A  +L+ M + G   + I+YN++L G C
Sbjct: 383 LLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHC 442

Query: 340 KDGK 343
           K GK
Sbjct: 443 KHGK 446



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 115/201 (57%), Gaps = 1/201 (0%)

Query: 141 FQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
            Q+++  + P+A  +N+L+   V    L  A  VFDEM  R ++ T+V+F T+I G+C  
Sbjct: 105 LQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRA 164

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
             +D A  L    M    V PD   + +LI+GLC VG +  A GV E+M    ++ +A +
Sbjct: 165 GDLDGAETLHRR-MSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVV 223

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
           ++ LI A  K G       + +EM+ERG +P++VTYNA+++G C+  D ++A  I+ EM 
Sbjct: 224 FTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMR 283

Query: 321 DKGCKANPISYNVILGGLCKD 341
             G + + ++Y  ++ G CK+
Sbjct: 284 SAGLRPDTVTYTTLIDGYCKE 304



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 64/122 (52%)

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+ ++F  L++ L  +GEL+ A  V +EM    +      ++++IS + +AG  +    +
Sbjct: 114 PEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETL 173

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            + M E G  P+  TY ALI G C+    E A  + ++M  +G K N + + +++   CK
Sbjct: 174 HRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCK 233

Query: 341 DG 342
            G
Sbjct: 234 KG 235



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 46/87 (52%)

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +A +++ L+  L + G       +  EM+ RG +   V++N +ISG C+  D + A T+ 
Sbjct: 115 EAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLH 174

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
             M + G   +  +Y  ++ GLC+ G+
Sbjct: 175 RRMSEAGVTPDVYTYGALIQGLCRVGR 201



 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 16/67 (23%), Positives = 34/67 (50%)

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E  A   ++ + G  P +  +N L+    +  +  +A  + DEM  +G +   +S+N ++
Sbjct: 99  EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMI 158

Query: 336 GGLCKDG 342
            G+C+ G
Sbjct: 159 SGMCRAG 165


>gi|302142881|emb|CBI20176.3| unnamed protein product [Vitis vinifera]
          Length = 146

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 76/126 (60%), Positives = 90/126 (71%), Gaps = 8/126 (6%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRA 60
           KP S  RL+ L RLQ DPKLALQLF+NPNP+P        KPFRY  L YDLIITKLGR+
Sbjct: 5   KPISPFRLSSLLRLQNDPKLALQLFQNPNPDP--------KPFRYTHLSYDLIITKLGRS 56

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           +MF EM+QIL QL+ +TR  PKEIIFCNVI FYGRARL +RA+Q F+ +  F  Q T   
Sbjct: 57  RMFHEMEQILSQLRRETRFSPKEIIFCNVISFYGRARLPDRAIQTFESIPEFRCQRTGTT 116

Query: 121 FNTLLN 126
           +  L+N
Sbjct: 117 WTLLMN 122


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 167/346 (48%), Gaps = 17/346 (4%)

Query: 7   RLACLPRLQKDPKLALQLFKNPNPNP-----NDTEAHPLKPFRYNLLHYDLIITKLGRAK 61
           RL C P  +    + L L +    +      ++ EA  + P  ++   Y ++I  L +A 
Sbjct: 143 RLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWS---YGILIDGLAKAG 199

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
             +E  ++  ++  D+ I P  + +  VI     A  L+ AL++F  M S   + +   F
Sbjct: 200 KLNEAYKLFRRML-DSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTF 258

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDE 177
           N L++     GK+D   E F+++++       PD  +Y+ LI G     R++DA  + ++
Sbjct: 259 NILIDAHCKRGKMD---EAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLED 315

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           MVKR+ +PT+VT  TLI+GLC   R+ EA ++  D M      PD   + +L+ G C  G
Sbjct: 316 MVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVL-DAMVSSGQSPDVVTYNTLVHGHCRAG 374

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           +   A  +  +MV   +  +   Y++L+S L KA R  E   +  +MK  GC PN  TY 
Sbjct: 375 QTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYT 434

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           ALI GFC     +    +  EM   G   + + Y  +   LCK G+
Sbjct: 435 ALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGR 480



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 130/270 (48%), Gaps = 2/270 (0%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           ++  + P    +  +I    +A  L  A  +F ++    V  +   + +L++        
Sbjct: 2   NERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSF 61

Query: 135 DRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           D  +ELF  M +    P   +YN++I        LE+A  +  +M++    P +VT+ T+
Sbjct: 62  DDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTV 121

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           + GLC   RV+EAL L  ++ R+    P+ +   ++I GLC   ++  A  V  EM    
Sbjct: 122 MDGLCKSGRVEEALLLFNEMERL-GCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           I  D+  Y  LI  L KAG+ NE   + + M + G  P++VTYN +I G C     + A 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +   M  KGC+ +  ++N+++   CK GK
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGK 270



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 146/326 (44%), Gaps = 15/326 (4%)

Query: 21  ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
           AL+LFK+         +   +P R+    ++++I    +    DE  ++L ++  D   V
Sbjct: 239 ALELFKS-------MRSKGCRPSRFT---FNILIDAHCKRGKMDEAFRLLKRMTDDGH-V 287

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  +I        ++ A  + ++M     + TV   NTL++     G++   +E+
Sbjct: 288 PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV 347

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
              M     SPD  +YN L+HG   + + E A ++  +MV R L P +VT+  L+ GLC 
Sbjct: 348 LDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCK 407

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R+ EA  +    M+     P+   + +LI G C+ G++   L +  EMV   I  D  
Sbjct: 408 ANRLPEACGVFAQ-MKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHV 466

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKE--RGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           +Y +L + L K+GR      IL+E +E  R        Y   + G       E A   + 
Sbjct: 467 VYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVR 526

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
           +M   G    P     ++ GLCK G+
Sbjct: 527 DMVRGGQLPAPERCASLVAGLCKSGQ 552



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 67/130 (51%)

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M   NV PD   +  LI GL   G+L+ A  + ++++   +      Y+SLI  L  A  
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            ++   +  +M  RGC P+ VTYN +I   CK    E A  ++ +M + G   + ++YN 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 334 ILGGLCKDGK 343
           ++ GLCK G+
Sbjct: 121 VMDGLCKSGR 130


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 159/299 (53%), Gaps = 2/299 (0%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y  +I+   +    DE  ++  ++     + P+ +++  +IG Y     L+ AL  
Sbjct: 554 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 613

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            D M    V MTV  +N L++     G+     EL + M  K ++PD  +YNILI+G   
Sbjct: 614 RDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCK 673

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              ++ A ++F+ M +R ++ T+VT+  LIY L  + +V E  KL ++ +R   ++PD  
Sbjct: 674 EGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVR-RGIRPDLV 732

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++ +LI      G +  A  +  EM + +I  D   Y++L+  L   GR +E   ++ EM
Sbjct: 733 LYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM 792

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ERG +P+ VTYN LISG+  + D + A  I +EM +KG     ++YN ++ GLCK+G+
Sbjct: 793 TERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQ 851



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 130/243 (53%), Gaps = 4/243 (1%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161
           A  +F +M    + +    FN +L    + GK  R  EL + M +   P+A +YN +I G
Sbjct: 472 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR---PNAVTYNTVIAG 528

Query: 162 CVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                R++ A  +  EM +R  + P   T+GT+I G C   RVDEA+K+ ++++    VK
Sbjct: 529 FCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK 588

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+  ++ +LI G C  G+L  AL  ++ MV   + M    Y+ L+ ALF  GR  E   +
Sbjct: 589 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 648

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           ++EM  +G  P+  TYN LI+G CKE + + A  I + M  +G +A  ++Y  ++  L K
Sbjct: 649 VEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSK 708

Query: 341 DGK 343
            G+
Sbjct: 709 KGQ 711



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 138/265 (52%), Gaps = 8/265 (3%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           YNLL + L +   G      E  +++ ++     + P    +  +I  + +   +++AL+
Sbjct: 629 YNLLVHALFMDGRGT-----EAYELVEEMGGKG-LAPDVFTYNILINGHCKEGNVKKALE 682

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCV 163
           +F+ MS   V+ TV  +  L+      G++    +LF + + + + PD   YN LI+   
Sbjct: 683 IFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHS 742

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            S  ++ A+++  EM K+R+ P  VT+ TL+ GLCL  RVDEA KL ++ M    ++PD 
Sbjct: 743 TSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDE-MTERGIQPDL 801

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +LI G    G++  AL ++ EM+          Y++LI  L K G+ ++   ++KE
Sbjct: 802 VTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKE 861

Query: 284 MKERGCKPNSVTYNALISGFCKEED 308
           M E G  P+  TY +LI G   E++
Sbjct: 862 MVENGITPDDSTYISLIEGLTTEDE 886



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 110/224 (49%), Gaps = 13/224 (5%)

Query: 19  KLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR 78
           K AL++F+N +           +  R  ++ Y  +I  L +     E  ++  +      
Sbjct: 678 KKALEIFENMS----------RRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRG- 726

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  +++  +I  +  +  ++RA ++  EM    +      +NTL+      G++D  +
Sbjct: 727 IRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEAR 786

Query: 139 ELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           +L  ++ E+ + PD  +YN LI G  +   ++DA ++ +EM+ +   PTL+T+  LI GL
Sbjct: 787 KLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGL 846

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
           C   + D+A  + ++++    + PD   + SLI+GL    E ++
Sbjct: 847 CKNGQGDDAENMVKEMVE-NGITPDDSTYISLIEGLTTEDERAI 889


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 159/299 (53%), Gaps = 2/299 (0%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y  +I+   +    DE  ++  ++     + P+ +++  +IG Y     L+ AL  
Sbjct: 549 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 608

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            D M    V MTV  +N L++     G+     EL + M  K ++PD  +YNILI+G   
Sbjct: 609 RDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCK 668

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              ++ A ++F+ M +R ++ T+VT+  LIY L  + +V E  KL ++ +R   ++PD  
Sbjct: 669 EGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVR-RGIRPDLV 727

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++ +LI      G +  A  +  EM + +I  D   Y++L+  L   GR +E   ++ EM
Sbjct: 728 LYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM 787

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ERG +P+ VTYN LISG+  + D + A  I +EM +KG     ++YN ++ GLCK+G+
Sbjct: 788 TERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQ 846



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 130/243 (53%), Gaps = 4/243 (1%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161
           A  +F +M    + +    FN +L    + GK  R  EL + M +   P+A +YN +I G
Sbjct: 467 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR---PNAVTYNTVIAG 523

Query: 162 CVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                R++ A  +  EM +R  + P   T+GT+I G C   RVDEA+K+ ++++    VK
Sbjct: 524 FCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK 583

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+  ++ +LI G C  G+L  AL  ++ MV   + M    Y+ L+ ALF  GR  E   +
Sbjct: 584 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 643

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           ++EM  +G  P+  TYN LI+G CKE + + A  I + M  +G +A  ++Y  ++  L K
Sbjct: 644 VEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSK 703

Query: 341 DGK 343
            G+
Sbjct: 704 KGQ 706



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 137/265 (51%), Gaps = 8/265 (3%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           YNLL + L +   G      E  +++ ++     + P    +  +I  + +   +++AL+
Sbjct: 624 YNLLVHALFMDGRGT-----EAYELVEEMGGKG-LAPDVFTYNILINGHCKEGNVKKALE 677

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCV 163
           +F+ MS   V+ TV  +  L+      G++    +LF + + + + PD   YN LI+   
Sbjct: 678 IFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHS 737

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            S  ++ A+++  EM K+R+ P  VT+ TL+ GLCL  RVDEA KL  D M    ++PD 
Sbjct: 738 TSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLI-DEMTERGIQPDL 796

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +LI G    G++  AL ++ EM+          Y++LI  L K G+ ++   ++KE
Sbjct: 797 VTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKE 856

Query: 284 MKERGCKPNSVTYNALISGFCKEED 308
           M E G  P+  TY +LI G   E++
Sbjct: 857 MVENGITPDDSTYISLIEGLTTEDE 881



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 110/224 (49%), Gaps = 13/224 (5%)

Query: 19  KLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR 78
           K AL++F+N +           +  R  ++ Y  +I  L +     E  ++  +      
Sbjct: 673 KKALEIFENMS----------RRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVR-RG 721

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  +++  +I  +  +  ++RA ++  EM    +      +NTL+      G++D  +
Sbjct: 722 IRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEAR 781

Query: 139 ELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           +L  ++ E+ + PD  +YN LI G  +   ++DA ++ +EM+ +   PTL+T+  LI GL
Sbjct: 782 KLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGL 841

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
           C   + D+A  + ++++    + PD   + SLI+GL    E ++
Sbjct: 842 CKNGQGDDAENMVKEMVE-NGITPDDSTYISLIEGLTTEDERAI 884


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 161/296 (54%), Gaps = 5/296 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQMFDE 108
           +D +I         DE  +  + +K +  ++P  I  CN ++  + +    E A  ++ E
Sbjct: 154 FDYLIKSCCDMNRADEAFECFYTMK-EKGVLPT-IETCNSLLSLFLKLNRTEAAWVLYAE 211

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRR 167
           M    ++ +V  FN ++N     GKL + K+    ME   V P+  +YN ++HG   S R
Sbjct: 212 MFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGR 271

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           +E A  +   M +++++P   T+G+LI G+C + R++EA K+ E++++   ++P   ++ 
Sbjct: 272 VEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQ-KGLRPSAVIYN 330

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +LI G C  G L +A   K+EM++  I      Y+SLI ALF   R +E   ++KE++E+
Sbjct: 331 TLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEK 390

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G  P+++TYN LI+G+C+  + + AF + DEM   G K    +Y  +L  L K  +
Sbjct: 391 GISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNR 446



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 149/283 (52%), Gaps = 10/283 (3%)

Query: 60  AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK 119
           +K+F+EM Q          + P  +I+  +I  +     L+ A    DEM    +  T+ 
Sbjct: 311 SKIFEEMVQ--------KGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMS 362

Query: 120 FFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
            +N+L++      + D  + +  +I EK +SPDA +YNILI+G       + A+ + DEM
Sbjct: 363 TYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEM 422

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
           +   ++PT  T+ +L++ L  + R+ EA  L + I     V PD  +F +LI G C+   
Sbjct: 423 LASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITS-EGVLPDAIMFNALIDGHCSNSN 481

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           +  A  + ++M R K+  D   +++++    + G+  E   +  EMK RG KP+ +++N 
Sbjct: 482 VKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNT 541

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           LISG+ +  D + AF + +EM D G     ++YN ++ GLCK+
Sbjct: 542 LISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKN 584



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 137/294 (46%), Gaps = 38/294 (12%)

Query: 85  IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM 144
           I  NV+   G+   L++A      M +  V+  +  +NT+++   + G+++    +   M
Sbjct: 226 IMINVLCKEGK---LKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTM 282

Query: 145 EKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
           ++  + PD+ +Y  LI G     RLE+A K+F+EMV++ L+P+ V + TLI G C +  +
Sbjct: 283 KRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNL 342

Query: 204 DEALKLKEDI--------MRVYN--------------------------VKPDGQVFASL 229
           D A   K+++        M  YN                          + PD   +  L
Sbjct: 343 DMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNIL 402

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           I G C       A  + +EM+   I+     Y+SL+  L K  R  E   + K++   G 
Sbjct: 403 INGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGV 462

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            P+++ +NALI G C   + + AF +L +M       + +++N I+ G C++GK
Sbjct: 463 LPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGK 516



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 148/309 (47%), Gaps = 8/309 (2%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           E   +KP   N++ Y+ I+     +   +    IL  +K   +I P    + ++I    +
Sbjct: 248 ETSGVKP---NIVTYNTIVHGYCSSGRVEAADAILTTMKRQ-KIEPDSFTYGSLISGMCK 303

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF--QIMEKYVSPDAC 153
              LE A ++F+EM    ++ +   +NTL++     G LD M   +  ++++K +SP   
Sbjct: 304 QGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLD-MASAYKDEMLKKGISPTMS 362

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN LIH   + +R ++A  +  E+ ++ + P  +T+  LI G C      +A  L  D 
Sbjct: 363 TYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLL-HDE 421

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M    +KP  + + SL+  L     +  A  + +++  + +  DA ++++LI        
Sbjct: 422 MLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSN 481

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
                 +LK+M      P+ VT+N ++ G C+E   E A  + DEM  +G K + IS+N 
Sbjct: 482 VKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNT 541

Query: 334 ILGGLCKDG 342
           ++ G  + G
Sbjct: 542 LISGYSRRG 550



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 103/209 (49%), Gaps = 2/209 (0%)

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           +LH     + I P +  + +++    +   ++ A  +F +++S  V      FN L++  
Sbjct: 417 LLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGH 476

Query: 129 LTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
            +   +    EL + M++  V PD  ++N ++ G     ++E+A ++FDEM +R ++P  
Sbjct: 477 CSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDH 536

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           ++F TLI G      + +A +++ +++      P    + +L++GLC   E  LA  + +
Sbjct: 537 ISFNTLISGYSRRGDIKDAFRVRNEMLDT-GFNPTVLTYNALVQGLCKNQEGDLAEELLK 595

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           EMV   +  D   Y +LI  + K    +E
Sbjct: 596 EMVSKGMTPDDTTYFTLIEGIAKVNIPDE 624



 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 251 RDKIEMDAGI-YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           RD++   + I +  LI +     R +E       MKE+G  P   T N+L+S F K    
Sbjct: 143 RDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRT 202

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           EAA+ +  EM     K++  ++N+++  LCK+GK
Sbjct: 203 EAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGK 236


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 161/296 (54%), Gaps = 5/296 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQMFDE 108
           +D +I         DE  +  + +K +  ++P  I  CN ++  + +    E A  ++ E
Sbjct: 154 FDYLIKSCCDMNRADEAFECFYTMK-EKGVLPT-IETCNSLLSLFLKLNRTEAAWVLYAE 211

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRR 167
           M    ++ +V  FN ++N     GKL + K+    ME   V P+  +YN ++HG   S R
Sbjct: 212 MFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGR 271

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           +E A  +   M +++++P   T+G+LI G+C + R++EA K+ E++++   ++P   ++ 
Sbjct: 272 VEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQ-KGLRPSAVIYN 330

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +LI G C  G L +A   K+EM++  I      Y+SLI ALF   R +E   ++KE++E+
Sbjct: 331 TLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEK 390

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G  P+++TYN LI+G+C+  + + AF + DEM   G K    +Y  +L  L K  +
Sbjct: 391 GISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNR 446



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 149/283 (52%), Gaps = 10/283 (3%)

Query: 60  AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK 119
           +K+F+EM Q          + P  +I+  +I  +     L+ A    DEM    +  T+ 
Sbjct: 311 SKIFEEMVQ--------KGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMS 362

Query: 120 FFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
            +N+L++      + D  + +  +I EK +SPDA +YNILI+G       + A+ + DEM
Sbjct: 363 TYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEM 422

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
           +   ++PT  T+ +L++ L  + R+ EA  L + I     V PD  +F +LI G C+   
Sbjct: 423 LASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITS-EGVLPDVIMFNALIDGHCSNSN 481

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           +  A  + ++M R K+  D   +++++    + G+  E   +  EMK RG KP+ +++N 
Sbjct: 482 VKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNT 541

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           LISG+ +  D + AF + +EM D G     ++YN ++ GLCK+
Sbjct: 542 LISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKN 584



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 136/294 (46%), Gaps = 38/294 (12%)

Query: 85  IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM 144
           I  NV+   G+   L++A      M +  V+  +  +NT+++   + G+++    +   M
Sbjct: 226 IMINVLCKEGK---LKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTM 282

Query: 145 EKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
           ++  + PD+ +Y  LI G     RLE+A K+F+EMV++ L+P+ V + TLI G C +  +
Sbjct: 283 KRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNL 342

Query: 204 DEALKLKEDI--------MRVYN--------------------------VKPDGQVFASL 229
           D A   K+++        M  YN                          + PD   +  L
Sbjct: 343 DMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNIL 402

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           I G C       A  + +EM+   I+     Y+SL+  L K  R  E   + K++   G 
Sbjct: 403 INGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGV 462

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            P+ + +NALI G C   + + AF +L +M       + +++N I+ G C++GK
Sbjct: 463 LPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGK 516



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 147/309 (47%), Gaps = 8/309 (2%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           E   +KP   N++ Y+ I+     +   +    IL  +K   +I P    + ++I    +
Sbjct: 248 ETSGVKP---NIVTYNTIVHGYCSSGRVEAADAILTTMKRQ-KIEPDSFTYGSLISGMCK 303

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF--QIMEKYVSPDAC 153
              LE A ++F+EM    ++ +   +NTL++     G LD M   +  ++++K +SP   
Sbjct: 304 QGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLD-MASAYKDEMLKKGISPTMS 362

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN LIH   + +R ++A  +  E+ ++ + P  +T+  LI G C      +A  L  D 
Sbjct: 363 TYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLL-HDE 421

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M    +KP  + + SL+  L     +  A  + +++  + +  D  ++++LI        
Sbjct: 422 MLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSN 481

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
                 +LK+M      P+ VT+N ++ G C+E   E A  + DEM  +G K + IS+N 
Sbjct: 482 VKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNT 541

Query: 334 ILGGLCKDG 342
           ++ G  + G
Sbjct: 542 LISGYSRRG 550



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 104/209 (49%), Gaps = 2/209 (0%)

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           +LH     + I P +  + +++    +   ++ A  +F +++S  V   V  FN L++  
Sbjct: 417 LLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGH 476

Query: 129 LTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
            +   +    EL + M++  V PD  ++N ++ G     ++E+A ++FDEM +R ++P  
Sbjct: 477 CSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDH 536

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           ++F TLI G      + +A +++ +++      P    + +L++GLC   E  LA  + +
Sbjct: 537 ISFNTLISGYSRRGDIKDAFRVRNEMLDT-GFNPTVLTYNALVQGLCKNQEGDLAEELLK 595

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           EMV   +  D   Y +LI  + K    +E
Sbjct: 596 EMVSKGMTPDDTTYFTLIEGIAKVNIPDE 624



 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 251 RDKIEMDAGI-YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           RD++   + I +  LI +     R +E       MKE+G  P   T N+L+S F K    
Sbjct: 143 RDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRT 202

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           EAA+ +  EM     K++  ++N+++  LCK+GK
Sbjct: 203 EAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGK 236


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 159/299 (53%), Gaps = 2/299 (0%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y  +I+   +    DE  ++  ++     + P+ +++  +IG Y     L+ AL  
Sbjct: 180 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 239

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            D M    V MTV  +N L++     G+     EL + M  K ++PD  +YNILI+G   
Sbjct: 240 RDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCK 299

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              ++ A ++F+ M +R ++ T+VT+  LIY L  + +V E  KL ++ +R   ++PD  
Sbjct: 300 EGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVR-RGIRPDLV 358

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++ +LI      G +  A  +  EM + +I  D   Y++L+  L   GR +E   ++ EM
Sbjct: 359 LYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM 418

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ERG +P+ VTYN LISG+  + D + A  I +EM +KG     ++YN ++ GLCK+G+
Sbjct: 419 TERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQ 477



 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 4/244 (1%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161
           A  +F +M    + +    FN +L    + GK  R  EL + M +   P+A +YN +I G
Sbjct: 98  AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR---PNAVTYNTVIAG 154

Query: 162 CVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                R++ A  +  EM +R  + P   T+GT+I G C   RVDEA+K+ ++++    VK
Sbjct: 155 FCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK 214

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+  ++ +LI G C  G+L  AL  ++ MV   + M    Y+ L+ ALF  GR  E   +
Sbjct: 215 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 274

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           ++EM  +G  P+  TYN LI+G CKE + + A  I + M  +G +A  ++Y  ++  L K
Sbjct: 275 VEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSK 334

Query: 341 DGKC 344
            G+ 
Sbjct: 335 KGQV 338



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 138/265 (52%), Gaps = 8/265 (3%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           YNLL + L +   G      E  +++ ++     + P    +  +I  + +   +++AL+
Sbjct: 255 YNLLVHALFMDGRG-----TEAYELVEEMGGKG-LAPDVFTYNILINGHCKEGNVKKALE 308

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCV 163
           +F+ MS   V+ TV  +  L+      G++    +LF + + + + PD   YN LI+   
Sbjct: 309 IFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHS 368

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            S  ++ A+++  EM K+R+ P  VT+ TL+ GLCL  RVDEA KL ++ M    ++PD 
Sbjct: 369 TSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDE-MTERGIQPDL 427

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +LI G    G++  AL ++ EM+          Y++LI  L K G+ ++   ++KE
Sbjct: 428 VTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKE 487

Query: 284 MKERGCKPNSVTYNALISGFCKEED 308
           M E G  P+  TY +LI G   E++
Sbjct: 488 MVENGITPDDSTYISLIEGLTTEDE 512



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 35/173 (20%)

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHGC 162
           ++FDE     ++  +  +N L+N   T G +DR  E+   MEK  ++PD  +YN L+ G 
Sbjct: 343 KLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGL 402

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR------- 215
            +  R+++A K+ DEM +R +QP LVT+ TLI G  ++  V +AL+++ ++M        
Sbjct: 403 CLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTL 462

Query: 216 -VYN--------------------------VKPDGQVFASLIKGLCAVGELSL 241
             YN                          + PD   + SLI+GL    E ++
Sbjct: 463 LTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAI 515


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 152/299 (50%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y+++I    +         +L ++K ++ + P  + +  VI  + R   ++ A ++
Sbjct: 160 NEWTYNVLINGFCKVHKVHRAYLLLKEMK-ESGLAPNVVTYSTVIHGFCRQTKVDTAYKL 218

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F +M        +  +NTLL+     G +D   EL   M E+ + PD  SY+ L+ G   
Sbjct: 219 FRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCK 278

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + +++ A KVF++       P +V + TLI GLC   R+DEA KL E  MR  + +PD  
Sbjct: 279 TGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEK-MRENSCEPDVV 337

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +L+ GLC    L  A  V E M       +   YSSLI  L K G+  +   + K M
Sbjct: 338 TFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRM 397

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             RG +PN VTYN+LI GFC     ++A  +++EM   GC  + I+YN ++ GLCK G+
Sbjct: 398 IVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGR 456



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 170/331 (51%), Gaps = 35/331 (10%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y ++I  L ++   D+  ++L +++ ++  VP   I+  VI    +AR   +AL  
Sbjct: 58  NVFTYAVVIQGLCKSGDLDKACELLEEMR-ESGPVPDAAIYNFVIHALCKARNTAKALDY 116

Query: 106 FDEM-------------------------SSFNVQMTVK-------FFNTLLNPKLTCGK 133
           F  M                         +++  +M  K        +N L+N      K
Sbjct: 117 FRSMECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHK 176

Query: 134 LDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           + R   L + M E  ++P+  +Y+ +IHG     +++ A+K+F +MV+    P LVT+ T
Sbjct: 177 VHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNT 236

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           L+ GLC    +DEA +L  D MR   ++PD   + +L+ GLC  G++ +AL V E+    
Sbjct: 237 LLSGLCRNGLMDEAYELL-DEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNG 295

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
               D   YS+LI+ L KAGR +E   + ++M+E  C+P+ VT+ AL+ G CK +  + A
Sbjct: 296 DCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEA 355

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +L+ M D+ C  N I+Y+ ++ GLCK G+
Sbjct: 356 QQVLETMEDRNCTPNVITYSSLIDGLCKTGQ 386



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 159/300 (53%), Gaps = 4/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L +     + Q++  ++     I P  + + ++I  +     ++ AL +
Sbjct: 370 NVITYSSLIDGLCKTGQVRDAQEVFKRMIVRG-IEPNVVTYNSLIHGFCMTNGVDSALLL 428

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            +EM++      +  +NTL++     G+      LF  M+ K+ +PD  +Y+ LI G   
Sbjct: 429 MEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCK 488

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R++ A  +FD+M+K+ + P +VTF TL+ G C    VD+A +L E+ M   +  PD  
Sbjct: 489 LERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEE-MVASDCSPDVY 547

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SL+ G C VG +  A  V + M +   + +   Y++LI A  +AG+      +L+EM
Sbjct: 548 TYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEM 607

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG-DKGCKANPISYNVILGGLCKDGK 343
              G +PN +TY +LI GFC   D E A  IL+ +  D+ CKA+  +Y V++ GLC+ G+
Sbjct: 608 VGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGR 667



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ +  ++  L +     E QQ+L  ++ D    P  I + ++I    +   +  A ++
Sbjct: 335 DVVTFTALMDGLCKGDRLQEAQQVLETME-DRNCTPNVITYSSLIDGLCKTGQVRDAQEV 393

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           F  M    ++  V  +N+L++       +D    L + M      PD  +YN LI G   
Sbjct: 394 FKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCK 453

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R  +A ++F +M  +   P ++T+  LI G C   R+D A  L +D+++   V PD  
Sbjct: 454 TGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLK-QAVLPDVV 512

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F++L++G C  G +  A  + EEMV      D   Y+SL+    K GR  E   +LK M
Sbjct: 513 TFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRM 572

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            +RGC+PN VTY ALI  FC+      A+ +L+EM   G + N I+Y  ++GG C  G
Sbjct: 573 AKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTG 630



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 158/298 (53%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ Y+ +++ L R  + DE  ++L +++ +  + P +  +  ++    +   ++ AL++
Sbjct: 230 NLVTYNTLLSGLCRNGLMDEAYELLDEMR-ERGLQPDKFSYDTLMAGLCKTGKIDMALKV 288

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F++ S+ +    V  ++TL+      G+LD   +LF+ M E    PD  ++  L+ G   
Sbjct: 289 FEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCK 348

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             RL++A +V + M  R   P ++T+ +LI GLC   +V +A ++ + ++ V  ++P+  
Sbjct: 349 GDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMI-VRGIEPNVV 407

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SLI G C    +  AL + EEM       D   Y++LI  L K GR  E   +  +M
Sbjct: 408 TYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDM 467

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           K + C P+ +TY+ LI GFCK E  + A T+ D+M  +    + ++++ ++ G C  G
Sbjct: 468 KAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAG 525



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 151/299 (50%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I  L +A   DE  ++  +++ ++   P  + F  ++    +   L+ A Q+
Sbjct: 300 DVVAYSTLIAGLCKAGRLDEACKLFEKMRENS-CEPDVVTFTALMDGLCKGDRLQEAQQV 358

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            + M   N    V  +++L++     G++   +E+F+ M  + + P+  +YN LIHG  +
Sbjct: 359 LETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCM 418

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  ++ A  + +EM      P ++T+ TLI GLC   R  EA +L  D M+     PD  
Sbjct: 419 TNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGD-MKAKFCNPDVI 477

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++ LI G C +  + +A  + ++M++  +  D   +S+L+     AG  ++   +L+EM
Sbjct: 478 TYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEM 537

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               C P+  TY +L+ GFCK      A  +L  M  +GC+ N ++Y  ++   C+ GK
Sbjct: 538 VASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGK 596



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 19/243 (7%)

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----VSPDACSYNILI 159
           Q FD     NV    + F  LL  +       R+ E   I++      ++P+  +Y ++I
Sbjct: 18  QGFDH----NVYTYNRLFEALLRAR-------RIDETCHILKNGWPPGITPNVFTYAVVI 66

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G   S  L+ A ++ +EM +    P    +  +I+ LC      +AL    D  R    
Sbjct: 67  QGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKAL----DYFRSMEC 122

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           + +   +  +I GLC    L  A     +M +     +   Y+ LI+   K  + +    
Sbjct: 123 EKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYL 182

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +LKEMKE G  PN VTY+ +I GFC++   + A+ +  +M + GC  N ++YN +L GLC
Sbjct: 183 LLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLC 242

Query: 340 KDG 342
           ++G
Sbjct: 243 RNG 245



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 135/281 (48%), Gaps = 4/281 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I    + +  D M + L        ++P  + F  ++  Y  A L++ A ++
Sbjct: 475 DVITYSCLIGGFCKLERID-MARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERL 533

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            +EM + +    V  + +L++     G++   + + + M K    P+  +Y  LI     
Sbjct: 534 LEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCR 593

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + +   A+++ +EMV   +QP ++T+ +LI G C    ++EA K+ E + R  N K D  
Sbjct: 594 AGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMF 653

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  ++ GLC  G +S AL + E + +        IY +LI  L +     +   +L+EM
Sbjct: 654 AYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEM 713

Query: 285 K-ERGCKPNSVTYNALISGFCKEEDFEAAFTILDE-MGDKG 323
              R  +PN+  Y A+I    +E   E A  + DE +G+KG
Sbjct: 714 TLSRKSRPNAEAYEAVIQELAREGRHEEANALADELLGNKG 754



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 4/190 (2%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN L    + +RR+++   +        + P + T+  +I GLC    +D+A +L E+ 
Sbjct: 26  TYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELLEE- 84

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           MR     PD  ++  +I  LC     + AL     M   + E +   ++ +I  L KA R
Sbjct: 85  MRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSM---ECEKNVITWTIMIDGLCKANR 141

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E      +MK++G  PN  TYN LI+GFCK      A+ +L EM + G   N ++Y+ 
Sbjct: 142 LPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYST 201

Query: 334 ILGGLCKDGK 343
           ++ G C+  K
Sbjct: 202 VIHGFCRQTK 211


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 152/299 (50%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y+++I    +         +L ++K ++ + P  + +  VI  + R   ++ A ++
Sbjct: 41  NEWTYNVLINGFCKVHKVHRAYLLLKEMK-ESGLAPNVVTYSTVIHGFCRQTKVDTAYKL 99

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F +M        +  +NTLL+     G +D   EL   M E+ + PD  SY+ L+ G   
Sbjct: 100 FRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCK 159

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + +++ A KVF++       P +V + TLI GLC   R+DEA KL E  MR  + +PD  
Sbjct: 160 TGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEK-MRENSCEPDVV 218

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +L+ GLC    L  A  V E M       +   YSSLI  L K G+  +   + K M
Sbjct: 219 TFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRM 278

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             RG +PN VTYN+LI GFC     ++A  +++EM   GC  + I+YN ++ GLCK G+
Sbjct: 279 IVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGR 337



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 159/300 (53%), Gaps = 4/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L +     + Q++  ++     I P  + + ++I  +     ++ AL +
Sbjct: 251 NVITYSSLIDGLCKTGQVRDAQEVFKRMIVRG-IEPNVVTYNSLIHGFCMTNGVDSALLL 309

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            +EM++      +  +NTL++     G+      LF  M+ K+ +PD  +Y+ LI G   
Sbjct: 310 MEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCK 369

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R++ A  +FD+M+K+ + P +VTF TL+ G C    VD+A +L E+ M   +  PD  
Sbjct: 370 LERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEE-MVASDCSPDVY 428

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SL+ G C VG +  A  V + M +   + +   Y++LI A  +AG+      +L+EM
Sbjct: 429 TYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEM 488

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG-DKGCKANPISYNVILGGLCKDGK 343
              G +PN +TY +LI GFC   D E A  +L+ +  D+ CKA+  +Y V++ GLC+ G+
Sbjct: 489 VGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGR 548



 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 84/250 (33%), Positives = 137/250 (54%), Gaps = 2/250 (0%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDAC 153
           +A  L  A   F +M           +N L+N      K+ R   L + M E  ++P+  
Sbjct: 19  KANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVV 78

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +Y+ +IHG     +++ A+K+F +MV+    P LVT+ TL+ GLC    +DEA +L  D 
Sbjct: 79  TYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELL-DE 137

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           MR   ++PD   + +L+ GLC  G++ +AL V E+        D   YS+LI+ L K GR
Sbjct: 138 MRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGR 197

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +E   + ++M+E  C+P+ VT+ AL+ G CK +  + A  +L+ M D+ C  N I+Y+ 
Sbjct: 198 LDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSS 257

Query: 334 ILGGLCKDGK 343
           ++ GLCK G+
Sbjct: 258 LIDGLCKTGQ 267



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ +  ++  L +     E QQ+L  ++ D    P  I + ++I    +   +  A ++
Sbjct: 216 DVVTFTALMDGLCKGDRLQEAQQVLETME-DRNCTPNVITYSSLIDGLCKTGQVRDAQEV 274

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           F  M    ++  V  +N+L++       +D    L + M      PD  +YN LI G   
Sbjct: 275 FKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCK 334

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R  +A ++F +M  +   P ++T+  LI G C   R+D A  L +D+++   V PD  
Sbjct: 335 TGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLK-QAVLPDVV 393

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F++L++G C  G +  A  + EEMV      D   Y+SL+    K GR  E   +LK M
Sbjct: 394 TFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRM 453

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            +RGC+PN VTY ALI  FC+      A+ +L+EM   G + N I+Y  ++GG C  G
Sbjct: 454 AKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTG 511



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 150/299 (50%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I  L +    DE  ++  +++ ++   P  + F  ++    +   L+ A Q+
Sbjct: 181 DVVAYSTLIAGLCKTGRLDEACKLFEKMRENS-CEPDVVTFTALMDGLCKGDRLQEAQQV 239

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            + M   N    V  +++L++     G++   +E+F+ M  + + P+  +YN LIHG  +
Sbjct: 240 LETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCM 299

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  ++ A  + +EM      P ++T+ TLI GLC   R  EA +L  D M+     PD  
Sbjct: 300 TNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGD-MKAKFCNPDVI 358

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++ LI G C +  + +A  + ++M++  +  D   +S+L+     AG  ++   +L+EM
Sbjct: 359 TYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEM 418

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               C P+  TY +L+ GFCK      A  +L  M  +GC+ N ++Y  ++   C+ GK
Sbjct: 419 VASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGK 477



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 135/281 (48%), Gaps = 4/281 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I    + +  D M + L        ++P  + F  ++  Y  A L++ A ++
Sbjct: 356 DVITYSCLIGGFCKLERID-MARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERL 414

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            +EM + +    V  + +L++     G++   + + + M K    P+  +Y  LI     
Sbjct: 415 LEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCR 474

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + +   A+K+ +EMV   +QP ++T+ +LI G C    ++EA K+ E + R  N K D  
Sbjct: 475 AGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMF 534

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  ++ GLC  G +S AL + E + +        IY +LI  L +     +   +L+EM
Sbjct: 535 AYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEM 594

Query: 285 K-ERGCKPNSVTYNALISGFCKEEDFEAAFTILDE-MGDKG 323
              R  +PN+  Y A+I    +E   E A  + DE +G+KG
Sbjct: 595 TLSRKSRPNAEAYEAVIQELAREGRHEEANALADELLGNKG 635



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 63/118 (53%)

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  +I GLC    L  A     +M +     +   Y+ LI+   K  + +    +LKEM
Sbjct: 9   TWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEM 68

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           KE G  PN VTY+ +I GFC++   + A+ +  +M + GC  N ++YN +L GLC++G
Sbjct: 69  KESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNG 126



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 46/83 (55%)

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
           ++ +I  L KA R  E      +MK++G  PN  TYN LI+GFCK      A+ +L EM 
Sbjct: 10  WTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMK 69

Query: 321 DKGCKANPISYNVILGGLCKDGK 343
           + G   N ++Y+ ++ G C+  K
Sbjct: 70  ESGLAPNVVTYSTVIHGFCRQTK 92



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           C+ N +T+  +I G CK      A T   +M  KG   N  +YNV++ G CK
Sbjct: 3   CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCK 54


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score =  150 bits (379), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 104/309 (33%), Positives = 149/309 (48%), Gaps = 37/309 (11%)

Query: 70  LHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL 129
           LH L  D  + P+   F  ++    R+  L  A  +FDEM    VQ TV  FNTL++   
Sbjct: 231 LHLL--DAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMC 288

Query: 130 TCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
               L+    L  +M K  ++PD  +Y   I G   + R++DA ++F+EM +R L P  V
Sbjct: 289 KASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTV 348

Query: 189 TFGTLIYGLC--------LELRVDEA-----------------------LKLKEDI---M 214
              TLI   C        LELR + A                       +K   DI   M
Sbjct: 349 VLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEM 408

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           R   +KPD   + +LI G C  GEL  A+ +K+EM  + + +D   Y++LIS L KAGR 
Sbjct: 409 RKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRS 468

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            +   IL EM E G +P++ TY  +I  FCK  D +  F  L EM +KG     ++YNV+
Sbjct: 469 VDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVV 528

Query: 335 LGGLCKDGK 343
           + G C  G+
Sbjct: 529 MNGFCSLGQ 537


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/284 (34%), Positives = 139/284 (48%), Gaps = 35/284 (12%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDAC 153
           R+  L  A  +FDEM    VQ TV  FNTL++       L+    L  +M K  ++PD  
Sbjct: 126 RSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVY 185

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC--------LELRVDE 205
           +Y   I G   + R++DA ++F+EM +R L P  V   TLI   C        LELR + 
Sbjct: 186 TYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEM 245

Query: 206 A-----------------------LKLKEDI---MRVYNVKPDGQVFASLIKGLCAVGEL 239
           A                       +K   DI   MR   +KPD   + +LI G C  GEL
Sbjct: 246 ATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGEL 305

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A+ +K+EM  + + +D   Y++LIS L KAGR  +   IL EM E G +P++ TY  +
Sbjct: 306 DTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMV 365

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I  FCK  D +  F  L EM +KG     ++YNV++ G C  G+
Sbjct: 366 IDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQ 409



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 115/203 (56%), Gaps = 1/203 (0%)

Query: 141 FQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
             +++  V P+A  +N+L+   + S +L  A  VFDEM++R +QPT+VTF TL+ G+C  
Sbjct: 103 LHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKA 162

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
             ++ A  L+  +M    + PD   + + I+GLC  G +  A+ + EEM    +  +  +
Sbjct: 163 SDLNNANALR-GLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVV 221

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
            ++LI A  K G       +  EM  RG K + V YNAL++GFC+  D +AA  I++EM 
Sbjct: 222 LTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMR 281

Query: 321 DKGCKANPISYNVILGGLCKDGK 343
             G K + ++Y  ++ G CK+G+
Sbjct: 282 KDGLKPDKVTYTTLIDGCCKEGE 304


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 138/264 (52%), Gaps = 5/264 (1%)

Query: 81  PKEIIFCNVI--GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           P   +  NV+  G+    R+ E  L   DEMS+   +     FN+L+N     G +    
Sbjct: 278 PSSNVTVNVLVHGYCKEGRI-EEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHAL 336

Query: 139 ELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           E+  +M ++   PD  +YN LI G      +E+A ++ ++M+ R   P  VT+ TLI  L
Sbjct: 337 EILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTL 396

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C E +V+EA +L   ++    + PD   F SLI+GLC      LA+ + EEM       D
Sbjct: 397 CKENQVEEATELAR-VLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPD 455

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+ LI +L   GR  E  ++LKEM+  GC  N VTYN LI GFCK +  E A  I D
Sbjct: 456 EFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFD 515

Query: 318 EMGDKGCKANPISYNVILGGLCKD 341
           EM  +G   N ++YN ++ GLCK+
Sbjct: 516 EMELQGISRNVVTYNTLIDGLCKN 539



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 151/304 (49%), Gaps = 3/304 (0%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           L+ F  N + Y+ +I+ L +    +E  ++   L     I+P    F ++I         
Sbjct: 379 LRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKG-ILPDVCTFNSLIQGLCLTNNH 437

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
             A+++F+EM +         +N L++   + G+L+    L + ME    S +  +YN L
Sbjct: 438 RLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTL 497

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   ++R+E+A ++FDEM  + +   +VT+ TLI GLC   RV+EA +L  D M +  
Sbjct: 498 IDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLM-DQMLMEG 556

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           +KPD   + SL+   C  G++  A  + + M  +  E D+  Y +LI  L KAGR     
Sbjct: 557 LKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELAS 616

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +L+ ++ +G      TYN +I    +E+    A  +  EM +KG   + ++Y V+  GL
Sbjct: 617 RLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGL 676

Query: 339 CKDG 342
           C  G
Sbjct: 677 CSGG 680



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 130/268 (48%), Gaps = 6/268 (2%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD--- 135
           I P    F  +I    RA  +  A+ M +EM S+ +    K F TL+   +  G ++   
Sbjct: 207 IKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGAL 266

Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
           R++E  Q++         + N+L+HG     R+E+     DEM     +P   TF +L+ 
Sbjct: 267 RIRE--QMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVN 324

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           GLC    V  AL++  D+M      PD   + SLI GLC +GE+  A+ +  +M+     
Sbjct: 325 GLCRIGHVKHALEIL-DVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFS 383

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            +   Y++LIS L K  +  E   + + +  +G  P+  T+N+LI G C   +   A  +
Sbjct: 384 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMEL 443

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
            +EM  KGC  +  +YN+++  LC  G+
Sbjct: 444 FEEMKTKGCHPDEFTYNMLIDSLCSRGR 471



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 164/364 (45%), Gaps = 48/364 (13%)

Query: 13  RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ 72
           R Q D    L L    +  PN         F  + + Y+ ++ KLG+   F  M+++L +
Sbjct: 80  RRQSDEDSILDLLDWASKQPN---------FVPSSVIYEEVLRKLGKDGSFGSMRRVLQE 130

Query: 73  LKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS-FNVQMTVKFFNTLLNPKLTC 131
           +KH T    +   F  +I  Y +  L + A+ + D M   F +++    +N LLN  +  
Sbjct: 131 MKH-TGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDG 189

Query: 132 GKLDRMKELF--QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
            KL ++ E+   +++ + + PD  ++NILI     + ++  A  + +EM    L P   T
Sbjct: 190 NKL-KLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKT 248

Query: 190 FGTLIYGLCLELRVDEALKLKE----------------------------------DIMR 215
           F TL+ G   E  ++ AL+++E                                  D M 
Sbjct: 249 FTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMS 308

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
               +PD   F SL+ GLC +G +  AL + + M+++  + D   Y+SLI  L K G   
Sbjct: 309 NEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVE 368

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E   IL +M  R   PN+VTYN LIS  CKE   E A  +   +  KG   +  ++N ++
Sbjct: 369 EAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLI 428

Query: 336 GGLC 339
            GLC
Sbjct: 429 QGLC 432



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 148/307 (48%), Gaps = 10/307 (3%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL- 98
            +P R+        + ++G  K   E+  ++ Q   D    P    + ++I  +G  +L 
Sbjct: 312 FRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFD----PDIFTYNSLI--FGLCKLG 365

Query: 99  -LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYN 156
            +E A+++ ++M   +       +NTL++      +++   EL +++  K + PD C++N
Sbjct: 366 EVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFN 425

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            LI G  ++     A ++F+EM  +   P   T+  LI  LC   R++EAL L ++ M  
Sbjct: 426 SLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKE-MES 484

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
                +   + +LI G C    +  A  + +EM    I  +   Y++LI  L K  R  E
Sbjct: 485 SGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEE 544

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              ++ +M   G KP+  TYN+L++ FC+  D + A  I+  M   GC+ + ++Y  ++ 
Sbjct: 545 AAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLIL 604

Query: 337 GLCKDGK 343
           GL K G+
Sbjct: 605 GLSKAGR 611



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 71/140 (50%)

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
           DEA+ + + +   + +K D   +  L+  L    +L L   V   MV   I+ D   ++ 
Sbjct: 157 DEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNI 216

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LI AL +A +      +++EM   G  P+  T+  L+ GF +E +   A  I ++M   G
Sbjct: 217 LIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAG 276

Query: 324 CKANPISYNVILGGLCKDGK 343
           C ++ ++ NV++ G CK+G+
Sbjct: 277 CPSSNVTVNVLVHGYCKEGR 296



 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 50/243 (20%), Positives = 98/243 (40%), Gaps = 41/243 (16%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           L+    N++ Y+ +I  L + +  +E  Q++ Q+  +  + P +  + +++ ++ RA  +
Sbjct: 519 LQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEG-LKPDKFTYNSLLTYFCRAGDI 577

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR----------------------- 136
           ++A  +   M+S   +     + TL+      G+++                        
Sbjct: 578 KKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPV 637

Query: 137 MKELF-------------QIMEKYVSPDACSYNILIHG-CVVSRRLEDAWKVFDEMVKRR 182
           +K LF             ++MEK   PDA +Y ++  G C     + +A     EM  + 
Sbjct: 638 IKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEMTDKG 697

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
             P   +F  L  GLC     D  +KL   +M+  N   D +V  S+I G   + +   A
Sbjct: 698 FLPDFSSFLMLAEGLCALSMEDTLIKLVNRVMKQANFS-DSEV--SMIMGFLKIRKFQDA 754

Query: 243 LGV 245
           L  
Sbjct: 755 LAT 757


>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 175/337 (51%), Gaps = 14/337 (4%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L + +KDP+ AL++F   +           K F +N   Y  I+ KL + K F  + ++L
Sbjct: 139 LIKREKDPQHALKIFNMVSEQ---------KGFNHNNATYATILQKLAQFKKFQAVDRVL 189

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF-NVQMTVKFFNTLLNPKL 129
           HQ+ ++      E +F N++  Y +    E+    F  + +    + + K  ++ LN  +
Sbjct: 190 HQMTYEA-CKFHEGVFINLMKHYSKCGFHEKVFDAFLSIQTIVREKPSPKAISSCLNLLV 248

Query: 130 TCGKLDRMKELFQIMEKYV--SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ-PT 186
              ++D +++L    ++ +   P+ C +NIL+        ++ A++V  EM   +   P 
Sbjct: 249 DSNQVDLVRKLLLYAKRSLVYKPNVCIFNILVKYHCRRGDIDSAFEVVKEMRNSKYSYPN 308

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
           ++T+ TL+ GLC   R+ EA +L E+++    + PD   +  LI G C  G+   A  V 
Sbjct: 309 VITYSTLMDGLCRNGRLKEAFELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVI 368

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           E M  +    +   YS+L+  L KAG+  +   +L EMK  G KP+++TY +LI+ F + 
Sbjct: 369 EFMKNNGCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRN 428

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              + A  +L EM +  C+A+ +++NVILGGLC++G+
Sbjct: 429 GQIDEAIELLTEMKENDCQADTVTFNVILGGLCREGR 465



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 148/303 (48%), Gaps = 3/303 (0%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           ++ N+  +++++    R    D   +++ ++++     P  I +  ++    R   L+ A
Sbjct: 269 YKPNVCIFNILVKYHCRRGDIDSAFEVVKEMRNSKYSYPNVITYSTLMDGLCRNGRLKEA 328

Query: 103 LQMFDEMSSFNVQMTVKF-FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIH 160
            ++F+EM S +  +     +N L+N     GK DR + + + M+     P+  +Y+ L+ 
Sbjct: 329 FELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVD 388

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G   + +L+DA  V  EM    L+P  +T+ +LI       ++DEA++L  + M+  + +
Sbjct: 389 GLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIELLTE-MKENDCQ 447

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
            D   F  ++ GLC  G    AL + E++ +  + ++ G Y  ++++L +     +   +
Sbjct: 448 ADTVTFNVILGGLCREGRFDEALDMIEKLPQQGVYLNKGSYRIVLNSLTQNCELRKANKL 507

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L  M  RG  P+  T N L+   CKE     A T L ++ D G +    S+ +++  +C+
Sbjct: 508 LGLMLSRGFVPHYATSNELLVRLCKEGMANDAATALFDLVDMGFQPQHDSWELLIDLICR 567

Query: 341 DGK 343
           D K
Sbjct: 568 DRK 570


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 153/298 (51%), Gaps = 6/298 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ ++ II  L ++    E  Q+   +     +VP +I +C +I    R     +A  +
Sbjct: 464 NVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEAL 523

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            D M   +       FN  +N     G + R  +++ +++E  + PD  ++NILI G   
Sbjct: 524 LDAMPDPDTYA----FNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACK 579

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +   E A  +F+EMV + LQP ++TFG LI GLC   +V+ A  +  D+M    V P+  
Sbjct: 580 AGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDIL-DLMGNLGVPPNVV 638

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +L+ GLC  G +  A    EEMV      D+  Y SL+ AL +A R ++   ++ E+
Sbjct: 639 TYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSEL 698

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           K  G  P++VTYN L+ G  K    E A T+L+EM  KG   + ++YN ++  LCK G
Sbjct: 699 KSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAG 756



 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 161/331 (48%), Gaps = 33/331 (9%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT-RIVPKEIIFCNVIGFYGRARLLERALQ 104
           N++ Y+  +  L +  M  E  +++  L+  + R+ P  + F  +I    +   ++ A  
Sbjct: 322 NIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACS 381

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
           +FD+M +      V  +N L+N      K++R   + + M +K V+PD  +Y++L+    
Sbjct: 382 VFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFC 441

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            + R+++A ++   M  R   P +VTF ++I GLC   R  EA ++ +D+   + + PD 
Sbjct: 442 KASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDK 501

Query: 224 QVFASLIKGL-------------------------CAV------GELSLALGVKEEMVRD 252
             + +LI GL                         C +      G++S AL V   M+  
Sbjct: 502 ITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLEL 561

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
           ++  D   ++ LI+   KAG   +  A+ +EM  +  +P+ +T+ ALI G CK    EAA
Sbjct: 562 ELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAA 621

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             ILD MG+ G   N ++YN ++ GLCK G+
Sbjct: 622 RDILDLMGNLGVPPNVVTYNALVHGLCKSGR 652



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 140/289 (48%), Gaps = 40/289 (13%)

Query: 95  RARLLERALQMF-DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDA 152
           RA    RAL++F  EM+   V  T+  +NT++N      +L    ELF+ ++E+   PD 
Sbjct: 192 RAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDV 251

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN LI     +  LE+A ++  +M  R   P +VT+  LI GLC   R+DEA +L ++
Sbjct: 252 VTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQE 311

Query: 213 IMR----------VYN----------------------------VKPDGQVFASLIKGLC 234
           + R           YN                            V PD   F++LI GLC
Sbjct: 312 MTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLC 371

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
             G++  A  V ++M+      +   Y++L++ L KA +     A+++ M ++G  P+ +
Sbjct: 372 KCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVI 431

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           TY+ L+  FCK    + A  +L  M  +GC  N +++N I+ GLCK  +
Sbjct: 432 TYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDR 480



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 158/337 (46%), Gaps = 43/337 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ ++  L ++   +E  Q L ++   +  VP  I + +++    RA   + ALQ+
Sbjct: 636 NVVTYNALVHGLCKSGRIEEACQFLEEMVS-SGCVPDSITYGSLVYALCRASRTDDALQL 694

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVV 164
             E+ SF        +N L++     G+ ++ +  L +++ K   PD  +YN LI     
Sbjct: 695 VSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCK 754

Query: 165 SRRLEDAWKVFDEM---VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR------ 215
           +  LE+A ++  +M   V R   P +VT+  LI GLC   R+DEA +L +++MR      
Sbjct: 755 AGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVL 814

Query: 216 ----VYN----------------------------VKPDGQVFASLIKGLCAVGELSLAL 243
                YN                            V PD   F++LI GLC  G+   A 
Sbjct: 815 PNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEAC 874

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            V ++M+      +   Y+ L++ L K  +     A+++ M ++G  P+ +TY+ L+  F
Sbjct: 875 NVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAF 934

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           CK    + A  +L  M  +GC  N +++N I+ GLCK
Sbjct: 935 CKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCK 971



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 148/299 (49%), Gaps = 6/299 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y +++    +A   DE  ++LH +       P  + F ++I    ++     A QM
Sbjct: 429 DVITYSVLVDAFCKASRVDEALELLHGMAS-RGCTPNVVTFNSIIDGLCKSDRSGEAFQM 487

Query: 106 FDEMSSFNVQMTVKF-FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           FD+M+  +  +  K  + TL++     G+  + + L   M     PD  ++N  I+G   
Sbjct: 488 FDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPD---PDTYAFNCCINGLSK 544

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +  A +V++ M++  L P  VTF  LI G C     ++A  L E+ M   N++PD  
Sbjct: 545 LGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEE-MVAKNLQPDVM 603

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI GLC  G++  A  + + M    +  +   Y++L+  L K+GR  E    L+EM
Sbjct: 604 TFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEM 663

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              GC P+S+TY +L+   C+    + A  ++ E+   G   + ++YN+++ GL K G+
Sbjct: 664 VSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQ 722



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 147/300 (49%), Gaps = 9/300 (3%)

Query: 46   NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT-RIVPKEIIFCNVIGFYGRARLLERALQ 104
            N++ Y+  +  L +  M  E  +++  L+  + R+ P  + F  +I    +    + A  
Sbjct: 816  NIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN 875

Query: 105  MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
            +FD+M +      V  +N L+N      K++R   + + M +K V+PD  +Y++L+    
Sbjct: 876  VFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFC 935

Query: 164  VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
             +  +++A ++   M  R   P +VTF ++I GLC   +  EA ++ +D+   + + PD 
Sbjct: 936  KASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDK 995

Query: 224  QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
              + +LI GL   G      G  E ++    + D   ++  I+ L K G   +    L  
Sbjct: 996  ITYCTLIDGLFRTGWA----GQAEVLLDAMPDPDTYAFNCCINGLSKLG---DVSRALHR 1048

Query: 284  MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            M E    P+ VT+N LI+G CK  +FE A  + +EM  K  + + +++  ++ GLCK G+
Sbjct: 1049 MLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQ 1108



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 108/246 (43%), Gaps = 7/246 (2%)

Query: 100 ERALQMFDEMSSF-NVQMTVKFFNTLLNPKLTCGKLDRMKELFQI-MEKYVSPDACSYNI 157
           E   Q +D  ++    + T+  FN  LN  +  G   +  +LF+  +     P+  +Y+ 
Sbjct: 92  ELGTQFYDWAAALPGFKHTIFSFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYST 151

Query: 158 LIHGCV-VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           L+         +E     F     R    ++  +  ++  LC       AL++    M  
Sbjct: 152 LLRATYKAGGDVERTLGFF--RRIRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMAR 209

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             V P    + ++I GLC   EL   + + EE+V      D   Y++LI +L KAG   E
Sbjct: 210 DGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEE 269

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP--ISYNVI 334
              +  +M  R C PN VTY+ LI+G CK    + A  ++ EM  K C   P  I+YN  
Sbjct: 270 ARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSF 329

Query: 335 LGGLCK 340
           L GLCK
Sbjct: 330 LDGLCK 335


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 167/305 (54%), Gaps = 6/305 (1%)

Query: 43  FRYNLLHYDLIIT---KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           F  N++ Y+ +I    K+GR     +   IL ++  + ++ P  + F  +I  + +   L
Sbjct: 261 FWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMV-ENKVSPNSVTFNVLIDGFCKDENL 319

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNIL 158
             AL++F+EM S  ++ TV  +N+L+N     GKL+  K L  +++   + P+  +YN L
Sbjct: 320 SAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNAL 379

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G    + LE+A ++FD + K+ L P ++TF TL++G C   +++EA  L++ +M    
Sbjct: 380 INGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQK-VMLEKG 438

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
             P+   +  LI G C  G++     +  EM    ++ D   Y+ LISA  +     +  
Sbjct: 439 FLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAA 498

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            ++ EM ++G KP+ +TYN L++G+C E +  AA  +  +M  +G  AN ++YNV++ G 
Sbjct: 499 RLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGY 558

Query: 339 CKDGK 343
           C+ GK
Sbjct: 559 CRKGK 563



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 156/303 (51%), Gaps = 38/303 (12%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           +I P  I F  VI    +   L +A  + D+M  +     V  +NTL++     G++ +M
Sbjct: 225 KISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKM 284

Query: 138 KE----LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
            +    L +++E  VSP++ ++N+LI G      L  A KVF+EM  + L+PT+VT+ +L
Sbjct: 285 YKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSL 344

Query: 194 IYGLCLELRVDEALKLKEDIMR--------VYN--------------------------V 219
           + GLC E +++EA  L ++++          YN                          +
Sbjct: 345 VNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGL 404

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   F +L+ G C  G++  A  +++ M+      +A  Y+ LI    + G+  E   
Sbjct: 405 TPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKN 464

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +L EM+ RG K ++VTYN LIS +C++++ + A  ++DEM DKG K + ++YN++L G C
Sbjct: 465 LLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYC 524

Query: 340 KDG 342
            +G
Sbjct: 525 MEG 527



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/247 (33%), Positives = 128/247 (51%), Gaps = 7/247 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
            L+ F     +  +++V   N LL+  +   +   ++ ++ +++ + +SP+  ++N +I+
Sbjct: 179 GLEAFKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVIN 238

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK----LKEDIMRV 216
           G     +L  A  V D+M      P +VT+ TLI G C   RV +  K    LKE  M  
Sbjct: 239 GLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKE--MVE 296

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             V P+   F  LI G C    LS AL V EEM    ++     Y+SL++ L   G+ NE
Sbjct: 297 NKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNE 356

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +L EM     KPN +TYNALI+G+CK++  E A  + D +G +G   N I++N +L 
Sbjct: 357 AKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLH 416

Query: 337 GLCKDGK 343
           G CK GK
Sbjct: 417 GYCKFGK 423


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 160/299 (53%), Gaps = 2/299 (0%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y  +I+   +    DE  ++  ++     + P+ +++  +IG Y     L+ AL  
Sbjct: 107 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 166

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            D M    V MTV  +N L++     G+     EL + M  K ++PD  +YNILI+G   
Sbjct: 167 RDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCK 226

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              ++ A ++F+ M +R ++ T+VT+ +LIY L  + +V E  KL ++ +R   ++PD  
Sbjct: 227 EGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVR-RGIRPDLV 285

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++ +LI      G +  A  +  EM + +I  D   Y++L+  L   GR +E   ++ EM
Sbjct: 286 LYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM 345

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +RG +P+ VTYN LISG+  + D + A  I +EM +KG     ++YN ++ GLCK+G+
Sbjct: 346 TKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQ 404



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 130/243 (53%), Gaps = 4/243 (1%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161
           A  +F +M    + +    FN +L    + GK  R  EL + M +   P+A +YN +I G
Sbjct: 25  AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR---PNAVTYNTVIAG 81

Query: 162 CVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                R++ A  +  EM +R  + P   T+GT+I G C   RVDEA+K+ ++++    VK
Sbjct: 82  FCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK 141

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+  ++ +LI G C  G+L  AL  ++ MV   + M    Y+ L+ ALF  GR  E   +
Sbjct: 142 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 201

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           ++EM  +G  P+  TYN LI+G CKE + + A  I + M  +G +A  ++Y  ++  L K
Sbjct: 202 VEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSK 261

Query: 341 DGK 343
            G+
Sbjct: 262 KGQ 264



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 140/265 (52%), Gaps = 8/265 (3%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           YNLL + L +   G      E  +++ ++     + P    +  +I  + +   +++AL+
Sbjct: 182 YNLLVHALFMDGRG-----TEAYELVEEMGGKG-LAPDVFTYNILINGHCKEGNVKKALE 235

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCV 163
           +F+ MS   V+ TV  + +L+      G++    +LF + + + + PD   YN LI+   
Sbjct: 236 IFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHS 295

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            S  ++ A+++  EM K+R+ P  VT+ TL+ GLCL  RVDEA KL +++ +   ++PD 
Sbjct: 296 TSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTK-RGIQPDL 354

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +LI G    G++  AL ++ EM+          Y++LI  L K G+ ++   ++KE
Sbjct: 355 VTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKE 414

Query: 284 MKERGCKPNSVTYNALISGFCKEED 308
           M E G  P+  TY +LI G   E++
Sbjct: 415 MVENGITPDDSTYISLIEGLTTEDE 439



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 35/173 (20%)

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHGC 162
           ++FDE     ++  +  +N L+N   T G +DR  E+   MEK  ++PD  +YN L+ G 
Sbjct: 270 KLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGL 329

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR------- 215
            +  R+++A K+ DEM KR +QP LVT+ TLI G  ++  V +AL+++ ++M        
Sbjct: 330 CLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTL 389

Query: 216 -VYN--------------------------VKPDGQVFASLIKGLCAVGELSL 241
             YN                          + PD   + SLI+GL    E ++
Sbjct: 390 LTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAI 442


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 165/305 (54%), Gaps = 5/305 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           + P +Y    Y  +I+   +    ++  ++  ++  + ++ P  +++  +IG Y     L
Sbjct: 179 IAPDKYT---YATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNL 235

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           E AL+   EM    V MTV  +N  ++     G+      L + M EK ++PDA +YNIL
Sbjct: 236 EVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNIL 295

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G     + + A K+F+ MV + ++ T+VT+ +LI+ L ++  V E  +L  D +R   
Sbjct: 296 INGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVR-RG 354

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           ++PD  ++ +LI   C  G++  A  +  EM + +I  D   Y++L+  L   GR +E  
Sbjct: 355 IRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEAR 414

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +++EM +RG +P+ V+YN LISG+  + D + A  + DEM  KG     ++YN ++ GL
Sbjct: 415 GLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGL 474

Query: 339 CKDGK 343
           C +G+
Sbjct: 475 CLNGQ 479



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 128/242 (52%), Gaps = 4/242 (1%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161
           A  +F ++    + ++   FN +L    T GK  R  EL + M    SP+A +YN +I G
Sbjct: 100 AFVLFADIFRLRLPLSTTTFNIMLRHLCTAGKPVRALELLRQMP---SPNAVTYNTVIAG 156

Query: 162 CVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                R++   ++  EM +R  + P   T+ T+I G C   +V++A K+ ++++    V+
Sbjct: 157 FCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVE 216

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+  ++ +LI G C  G L +AL  + EMV   + M    Y+  +  LF  GR  E  A+
Sbjct: 217 PNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHAL 276

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           ++EM E+G  P++ TYN LI+G+CKE   + A  + + M  KG +A  ++Y  ++  L  
Sbjct: 277 VEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSM 336

Query: 341 DG 342
            G
Sbjct: 337 KG 338



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 135/269 (50%), Gaps = 8/269 (2%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           YNL  + L +   GRA    E   ++ ++  +  + P    +  +I  Y +    ++A++
Sbjct: 257 YNLFVHTLFME--GRAA---EAHALVEEMG-EKGLAPDAFTYNILINGYCKEGKEKKAMK 310

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCV 163
           MF+ M    ++ TV  + +L++     G +     LF   + + + PD   YN LI+   
Sbjct: 311 MFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHC 370

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
               ++ A+++  EM K+R+ P  VT+ TL+ GLCL  R+DEA  L E++ +   ++PD 
Sbjct: 371 TGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTK-RGIQPDL 429

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +LI G    G++  A+ V++EM+          Y+++I  L   G+  +   ++KE
Sbjct: 430 VSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVKE 489

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAA 312
           M   G  P+  TY +LI G   E++  AA
Sbjct: 490 MVGNGITPDDSTYISLIEGLTTEDERLAA 518


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 176/362 (48%), Gaps = 47/362 (12%)

Query: 23  QLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRI-VP 81
           Q+FK+P+    +T +H    ++   L +  +I     +  F  ++Q+LHQ+K + R+ + 
Sbjct: 45  QIFKSPS----NTSSHKWGSYKLGDLSFYSLIENFSNSLDFTSLEQLLHQMKCENRVFIE 100

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSS-FNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           K  I   +   YG+A L ++AL +F  M + F+ + TVK FNT+LN  +  G  D   E 
Sbjct: 101 KSFII--MFKAYGKAHLPQKALDLFHRMGAEFHCKQTVKSFNTVLNVVIQEGCFDLALEF 158

Query: 141 F-QIME----KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
           +  +++      + P+  S+N++I        ++ A +VF  M  R       T+ TL++
Sbjct: 159 YNHVIDSNSFSNIQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMH 218

Query: 196 GLCLELRVDEALKL-------------------------KEDIMRVYNV---------KP 221
           GLC E R+DEA+ L                         K D+ R   +          P
Sbjct: 219 GLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVP 278

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   + SL+ GLC  G+L  A+ +   MV +K   +   + +L+    K GR  +   +L
Sbjct: 279 NEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVL 338

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             ++E+G + N  +Y++LISG  KE   E    +  EM +KGCK N I Y+ ++ GLC++
Sbjct: 339 VSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCRE 398

Query: 342 GK 343
           GK
Sbjct: 399 GK 400



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 131/265 (49%), Gaps = 8/265 (3%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK-LDRMK 138
           VP E+ + +++        L++A+ + + M +         F TL++  +  G+ LD ++
Sbjct: 277 VPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVR 336

Query: 139 ELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            L  + EK    +  SY+ LI G     + E   +++ EMV++  +P  + +  LI GLC
Sbjct: 337 VLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLC 396

Query: 199 LELRVDEALKLKEDIMRVYN--VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
            E + DEA   KE ++ + N    P+   ++SL+ G    G++  A+ V +EM  +    
Sbjct: 397 REGKPDEA---KEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNH 453

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
               YS LI+ L K G+  E   + K+M  RG K + V Y+++I GFC  +  E    + 
Sbjct: 454 HEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLF 513

Query: 317 DEMGDKGCKANP--ISYNVILGGLC 339
           ++M     K  P  ++YN++L   C
Sbjct: 514 NQMLCHNPKLQPDVVTYNILLNAFC 538



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 140/329 (42%), Gaps = 36/329 (10%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N L ++L+I  L R    D+  ++   +  D   V     +  ++        ++ A+ +
Sbjct: 174 NGLSFNLVIKALCRVGNVDQAVEVFRGMS-DRNCVADGYTYSTLMHGLCNEGRIDEAVSL 232

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            DEM           FN L++     G L R  +L   M  K   P+  +YN L+HG  +
Sbjct: 233 LDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCL 292

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL--------------- 209
             +L+ A  + + MV  +  P  +TFGTL+ G     R  + +++               
Sbjct: 293 KGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFS 352

Query: 210 -------------KEDIMRVY------NVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
                         E  M+++        KP+  V+++LI GLC  G+   A     EM 
Sbjct: 353 YSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMK 412

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
                 ++  YSSL+   F+AG  ++   + KEM +  C  + V Y+ LI+G CK    +
Sbjct: 413 NKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLK 472

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLC 339
            A  +  +M  +G K + ++Y+ ++ G C
Sbjct: 473 EALIVWKQMLSRGIKLDVVAYSSMIHGFC 501


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 155/304 (50%), Gaps = 3/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + NL+ Y++II  L R     E  +IL ++ +     P E+ +  ++  Y +     
Sbjct: 278 KGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKG-FTPDEVTYNTLLNGYCKEGNFH 336

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
           +AL +  EM    V  +V  +  L+N       L+R  E F  M  + + P+  +Y  LI
Sbjct: 337 QALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLI 396

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G      L +A+++ +EM +    P++VT+   I+G C+  R++EAL + ++++    +
Sbjct: 397 DGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVE-KGL 455

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   ++++I G C  GEL  A  +K+EMV   +  DA  YSSLI  L +  R  E   
Sbjct: 456 APDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACD 515

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + +EM + G  P+  TY  LI+ +C E D   A  + DEM  KG   + ++Y+V++ GL 
Sbjct: 516 LSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLN 575

Query: 340 KDGK 343
           K  +
Sbjct: 576 KQAR 579



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 145/294 (49%), Gaps = 5/294 (1%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS 110
           D I+   G  K+  E  ++  ++   +R+ P    +  +I  +     L++ L  F EM 
Sbjct: 185 DAIVRSRGSVKLSAE--EVYREMIR-SRVSPNVYTYNILIRGFCSVGELQKGLGCFGEME 241

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLE 169
                  V  +NTL++     G++D    L + M  K + P+  SYN++I+G      ++
Sbjct: 242 RNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMK 301

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           +AW++ +EM  +   P  VT+ TL+ G C E    +AL +  +++R   V P    + +L
Sbjct: 302 EAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVR-NGVSPSVVTYTAL 360

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           I  +C    L+ A+   ++M    +  +   Y++LI    + G  NE   IL EM E G 
Sbjct: 361 INSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGF 420

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            P+ VTYNA I G C  E  E A  ++ EM +KG   + +SY+ I+ G C+ G+
Sbjct: 421 SPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGE 474



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 146/325 (44%), Gaps = 52/325 (16%)

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           ++H       + P  + +  +I    +AR L RA++ FD+M    ++   + + TL++  
Sbjct: 340 VIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGF 399

Query: 129 LTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
              G L+    +  ++ E   SP   +YN  IHG  V  R+E+A  V  EMV++ L P +
Sbjct: 400 SRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDV 459

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV----------- 236
           V++ T+I G C +  +D A ++K++++    V PD   ++SLI+GLC +           
Sbjct: 460 VSYSTIISGFCRKGELDRAFQMKQEMVE-KGVSPDAVTYSSLIQGLCEMRRLTEACDLSQ 518

Query: 237 ------------------------GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
                                   G+L+ AL + +EM+      DA  YS LI+ L K  
Sbjct: 519 EMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQA 578

Query: 273 RKNEFPAILKEMKERGCKPNSVTYN---------------ALISGFCKEEDFEAAFTILD 317
           R  E   +L ++      P+ VTY+               ALI GFC +     A  + +
Sbjct: 579 RTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFE 638

Query: 318 EMGDKGCKANPISYNVILGGLCKDG 342
            M ++  K     YNVI+ G C+ G
Sbjct: 639 SMVERNHKPGEAVYNVIIHGHCRGG 663



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 153/351 (43%), Gaps = 59/351 (16%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I  + +A+  +   +   Q++    + P E  +  +I  + R  LL  A ++
Sbjct: 353 SVVTYTALINSMCKARNLNRAMEFFDQMR-IRGLRPNERTYTTLIDGFSRQGLLNEAYRI 411

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF----QIMEKYVSPDACSYNILIHG 161
            +EM+      +V  +N  ++       L+RM+E      +++EK ++PD  SY+ +I G
Sbjct: 412 LNEMTESGFSPSVVTYNAFIHGHCV---LERMEEALGVVQEMVEKGLAPDVVSYSTIISG 468

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 L+ A+++  EMV++ + P  VT+ +LI GLC   R+ EA  L ++++ +  + P
Sbjct: 469 FCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDM-GLPP 527

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE----- 276
           D   + +LI   C  G+L+ AL + +EM+      DA  YS LI+ L K  R  E     
Sbjct: 528 DEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLL 587

Query: 277 FPAILKE---------------------------------------------MKERGCKP 291
           F  I +E                                             M ER  KP
Sbjct: 588 FKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKP 647

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
               YN +I G C+  +   AF +  EM   G   + ++   ++  L K+G
Sbjct: 648 GEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEG 698



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 38/195 (19%)

Query: 150 PDACSYNILIHGCVVSRRLE--DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           P   SYN ++   V SR      A +V+ EM++ R+ P + T                  
Sbjct: 175 PGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYT------------------ 216

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
                    YN+         LI+G C+VGEL   LG   EM R+    +   Y++LI A
Sbjct: 217 ---------YNI---------LIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDA 258

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
             K GR +E   +LK M  +G +PN ++YN +I+G C+E   + A+ IL+EMG KG   +
Sbjct: 259 YCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPD 318

Query: 328 PISYNVILGGLCKDG 342
            ++YN +L G CK+G
Sbjct: 319 EVTYNTLLNGYCKEG 333



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 127/299 (42%), Gaps = 20/299 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  II+   R    D   Q+  ++  +  + P  + + ++I      R L  A  +
Sbjct: 458 DVVSYSTIISGFCRKGELDRAFQMKQEMV-EKGVSPDAVTYSSLIQGLCEMRRLTEACDL 516

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             EM    +      + TL+N     G L++   L  +++ K   PDA +Y++LI+G   
Sbjct: 517 SQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNK 576

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY---------------GLCLELRVDEALKL 209
             R  +A ++  +++     P+ VT+ TLI                G C++  + EA ++
Sbjct: 577 QARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRV 636

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            E ++   N KP   V+  +I G C  G L  A  + +EM+            +LI ALF
Sbjct: 637 FESMVE-RNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALF 695

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTY-NALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           K G   E   ++ +   R C+ N       L+    KE + EA   +L +M   G   N
Sbjct: 696 KEGMNEEMSEVIGDTL-RSCRLNEAELAKVLVEINHKEGNMEAVLNVLTDMAKDGLLPN 753



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 261 YSSLISALFKAGRKNEFPA--ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
           Y+S++ A+ ++    +  A  + +EM      PN  TYN LI GFC   + +       E
Sbjct: 180 YNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGE 239

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M   GC  N ++YN ++   CK G+
Sbjct: 240 MERNGCLPNVVTYNTLIDAYCKMGR 264



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 3/125 (2%)

Query: 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           DR+ E   ++E+   P    YN++IHG      L  A+ ++ EM+     P  VT  TLI
Sbjct: 634 DRVFE--SMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLI 691

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
             L  E   +E  ++  D +R   +  + ++   L++     G +   L V  +M +D +
Sbjct: 692 KALFKEGMNEEMSEVIGDTLRSCRLN-EAELAKVLVEINHKEGNMEAVLNVLTDMAKDGL 750

Query: 255 EMDAG 259
             ++G
Sbjct: 751 LPNSG 755


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 162/296 (54%), Gaps = 3/296 (1%)

Query: 49  HYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDE 108
           +Y+++I K  +     + + I ++++    + P  + F  +I    ++R L+   ++   
Sbjct: 225 YYNILINKFCKEGSIRDAKLIFNEIRKRG-LRPTTVSFNTLINGLCKSRNLDEGFRLKKT 283

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRR 167
           M    +   V  ++ L++     G+LD  ++LF ++ ++ + P+  ++  LI G   SRR
Sbjct: 284 MEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRR 343

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           ++ A   + +M+   ++P LV + TL+ GLC    V++A KL ++ MR+  +KPD   + 
Sbjct: 344 IDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDE-MRMVGMKPDKITYT 402

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +LI G C  G+L  A+ +++ M  + + +D   +++LIS   + GR  +    L+EM E 
Sbjct: 403 TLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEA 462

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G KP+  TY  +I G+CK+ + +  F +L EM   G K   I+YNV++ GLCK G+
Sbjct: 463 GMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQ 518



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 155/352 (44%), Gaps = 51/352 (14%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQL-----KHDTRIVPKEI-----------IF 86
           FR+    Y  +   L   +MF E Q I+  L     K     V   I           +F
Sbjct: 97  FRHTSQSYCAMANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAGTRCSNFVF 156

Query: 87  CNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIME 145
             ++  Y  +  +  A+Q F  + + N Q+       LL+  +       +   + +I+E
Sbjct: 157 DALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILE 216

Query: 146 KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
               P    YNILI+       + DA  +F+E+ KR L+PT V+F TLI GLC    +DE
Sbjct: 217 YGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDE 276

Query: 206 ALKLKE----------------------------------DIMRVYNVKPDGQVFASLIK 231
             +LK+                                  D M+   ++P+G  F +LI 
Sbjct: 277 GFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALID 336

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           G C    +  A+    +M+   ++ D  +Y++L++ L K G  N+   ++ EM+  G KP
Sbjct: 337 GQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKP 396

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + +TY  LI G+CKE D E+A  I   M ++G   + +++  ++ G C+DG+
Sbjct: 397 DKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGR 448



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 131/283 (46%), Gaps = 16/283 (5%)

Query: 43  FRYNLLHYDLIITKLGR----AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           F Y++L + L   K GR     ++FDEMQQ          + P  I F  +I    R+R 
Sbjct: 294 FTYSVLIHGL--CKEGRLDVAEQLFDEMQQ--------RGLRPNGITFTALIDGQCRSRR 343

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           ++ A+  + +M +  V+  +  +NTLLN     G +++ ++L   M    + PD  +Y  
Sbjct: 344 IDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTT 403

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G      LE A ++   M +  +    V F  LI G C + RV +A +   +++   
Sbjct: 404 LIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEA- 462

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            +KPD   +  +I G C  G + +   + +EM  +  +     Y+ L++ L K G+    
Sbjct: 463 GMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNA 522

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
             +L+ M   G  P+ +TYN L+ G CK    E    + +E G
Sbjct: 523 NMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDLLKLRNEKG 565


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 153/302 (50%), Gaps = 12/302 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y +II    +    +E  ++  ++  ++  VP  + F  +I  + +A +LE A+++
Sbjct: 242 NVFTYSIIINCYCKLDKVEEAWEVFMKMI-ESNCVPNAVTFNTLIAGFCKAGMLEDAIKL 300

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTC---GKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
           F EM     + T+  +NTL++    C   G +    +LF  +E   ++P   +YN LI G
Sbjct: 301 FAEMEKIGCKATIVTYNTLIDS--LCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQG 358

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              +RRL +A + FDEM + +  P ++T+  LI GLC   R+ EA K  ED M+ +   P
Sbjct: 359 FCDARRLSEAMQYFDEM-EGKCAPNVITYSILIDGLCKVRRMKEAAKTLED-MKAHGYTP 416

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
               +  LI G C  GEL  AL   E+M       +  I+++LI  L KA R N+   +L
Sbjct: 417 TVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLL 476

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             M   GCKP+ +TYN LISG C     E A  + D M    C  N  ++N ++ GLC  
Sbjct: 477 CHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGM---ACAPNVTTFNFLIRGLCAQ 533

Query: 342 GK 343
            K
Sbjct: 534 KK 535



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 115/247 (46%), Gaps = 9/247 (3%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC-SYNI 157
           +  AL++F EM +     T    N LL      G++       Q M K  S  A  +YN+
Sbjct: 83  MSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNL 142

Query: 158 LIHGCV----VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           ++ G       + RLE A + F EM    ++P L ++  L+  L    R+ EA  L    
Sbjct: 143 VLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHAL---- 198

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
                  PD   +  L+ G C +G+   A  + +E+++   E +   YS +I+   K  +
Sbjct: 199 FSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDK 258

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   +  +M E  C PN+VT+N LI+GFCK    E A  +  EM   GCKA  ++YN 
Sbjct: 259 VEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNT 318

Query: 334 ILGGLCK 340
           ++  LCK
Sbjct: 319 LIDSLCK 325



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 124/249 (49%), Gaps = 9/249 (3%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           + +A+ +F +M S  +       NTLL      G++    +LF+ M+     P + S+NI
Sbjct: 48  MHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNI 107

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL----RVDEALKLKEDI 213
           L+ G  ++ R+ DA     +M K        T+  ++ GLC E     R+++A++  ++ 
Sbjct: 108 LLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKE- 166

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M+   V+PD + +  L+  L   G ++ A  +   M       D   Y+ L+    K G+
Sbjct: 167 MKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQ 223

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E  +++KE+ + G +PN  TY+ +I+ +CK +  E A+ +  +M +  C  N +++N 
Sbjct: 224 TYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNT 283

Query: 334 ILGGLCKDG 342
           ++ G CK G
Sbjct: 284 LIAGFCKAG 292



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 112/258 (43%), Gaps = 42/258 (16%)

Query: 122 NTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           N LL+  ++  K D+   LF +++    +P+A +YN+LI G     ++  A  VF +M  
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--------------------------- 213
             L P   T  TL+ GLC   ++  ALKL  ++                           
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRD 120

Query: 214 -------MRVYNVKPDGQVFASLIKGLC----AVGELSLALGVKEEMVRDKIEMDAGIYS 262
                  MR  +       +  ++KGLC    +   L  A+   +EM    +E D   Y 
Sbjct: 121 ALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYH 180

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
            L+SAL  +GR  E  A+   M    C P+ +TYN L+ G+CK      A +++ E+   
Sbjct: 181 ILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKA 237

Query: 323 GCKANPISYNVILGGLCK 340
           G + N  +Y++I+   CK
Sbjct: 238 GYEPNVFTYSIIINCYCK 255



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 120/255 (47%), Gaps = 11/255 (4%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN----PKLTCGKLDRMKELFQIMEK 146
           GF+   R+ + AL    +M   +  +    +N +L        +  +L++  E F+ M+ 
Sbjct: 111 GFFMAGRVRD-ALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKA 169

Query: 147 Y-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
             V PD  SY+IL+     S R+ +A  +F  M      P ++T+  L+ G C   +  E
Sbjct: 170 SGVEPDLESYHILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYE 226

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           A  L ++I++    +P+   ++ +I   C + ++  A  V  +M+      +A  +++LI
Sbjct: 227 AQSLMKEILKA-GYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLI 285

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE-DFEAAFTILDEMGDKGC 324
           +   KAG   +   +  EM++ GCK   VTYN LI   CK+      A  + +++   G 
Sbjct: 286 AGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGL 345

Query: 325 KANPISYNVILGGLC 339
               ++YN ++ G C
Sbjct: 346 TPTIVTYNSLIQGFC 360



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 36/188 (19%)

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N L+ G V +R+ + A ++F E++     P   T+  LI G C   ++ +A+ +  D M+
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSD-MK 59

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
              + P+     +L+ GLC +G++S AL    ++ R   EM AG +              
Sbjct: 60  SSGLLPNASTMNTLLLGLCEIGQMSSAL----KLFR---EMQAGPF-------------- 98

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
                          P S ++N L+ GF        A   L +M          +YN++L
Sbjct: 99  --------------LPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVL 144

Query: 336 GGLCKDGK 343
            GLC + K
Sbjct: 145 KGLCWENK 152


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 168/302 (55%), Gaps = 15/302 (4%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS 110
           + ++T LGRA+ F  M  +L ++K +  I P  + F  +I    + R ++ AL++F++M+
Sbjct: 309 NALLTALGRAREFKRMNTLLAEMK-EMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMN 367

Query: 111 S-----FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-----PDACSYNILIH 160
                 F V+  V  +NTL++    C K+ R +E   ++E+  S     P+  +YN LI 
Sbjct: 368 GGESNGFLVEPDVITYNTLIDG--LC-KVGRQEEGLGLVERMRSQPRCMPNTVTYNCLID 424

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G   +  +E A ++FD+M K  + P +VT  TL+ G+C   R++ A++   + M+   +K
Sbjct: 425 GYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNE-MQGKGLK 483

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
            +   + +LI+  C V  +  A+ + +EM+      DA +Y +LIS L +AG+ +    +
Sbjct: 484 GNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFV 543

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L +MKE G  P+ V++N LI+GFC++   + A+ +L EM + G K + ++YN ++    K
Sbjct: 544 LSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSK 603

Query: 341 DG 342
            G
Sbjct: 604 TG 605



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 137/294 (46%), Gaps = 7/294 (2%)

Query: 56  KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ 115
           K+GRA   +E+  ++ +   +  + P  I    +I    R+   +RA  +   +      
Sbjct: 244 KVGRAVDEEEIVGLVSKFA-EHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGV 302

Query: 116 MTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKV 174
           M     N LL       +  RM  L   M E  + P+  ++ ILI+     RR+++A +V
Sbjct: 303 MEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEV 362

Query: 175 FDEMVKRR-----LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           F++M         ++P ++T+ TLI GLC   R +E L L E +       P+   +  L
Sbjct: 363 FEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCL 422

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           I G C    +  A  + ++M +D +  +    ++L+  + K GR N       EM+ +G 
Sbjct: 423 IDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGL 482

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           K N+VTY ALI  FC   + E A  + DEM + GC  + I Y  ++ GL + GK
Sbjct: 483 KGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGK 536



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 144/300 (48%), Gaps = 3/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I  L +    +E   ++ +++   R +P  + +  +I  Y +A ++E A ++
Sbjct: 379 DVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAAREL 438

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           FD+M+   V   V   NTL++     G+++   E F  M+ K +  +A +Y  LI     
Sbjct: 439 FDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCN 498

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +E A ++FDEM++    P  + + TLI GL    ++D A       M+     PD  
Sbjct: 499 VNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRA-SFVLSKMKEAGFSPDIV 557

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F  LI G C   +L  A  + +EM    I+ D   Y++LIS   K G  +    ++K+M
Sbjct: 558 SFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKM 617

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG-CKANPISYNVILGGLCKDGK 343
            + G  P  VTY ALI  +C   + + A  I  +M        N + YN+++  LC+  +
Sbjct: 618 VKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQ 677



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 139/299 (46%), Gaps = 11/299 (3%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQMFDEMSS 111
           +I++L R+   D    +LH L     ++  E   CN ++   GRAR  +R   +  EM  
Sbjct: 276 LISRLCRSGRTDRAWDVLHGLMKLGGVM--EAASCNALLTALGRAREFKRMNTLLAEMKE 333

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK------YVSPDACSYNILIHG-CVV 164
            ++Q  V  F  L+N      ++D   E+F+ M         V PD  +YN LI G C V
Sbjct: 334 MDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKV 393

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            R+ E    V     + R  P  VT+  LI G C    ++ A +L  D M    V P+  
Sbjct: 394 GRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELF-DQMNKDGVPPNVV 452

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
              +L+ G+C  G ++ A+    EM    ++ +A  Y++LI A        +   +  EM
Sbjct: 453 TLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEM 512

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            E GC P+++ Y  LISG  +    + A  +L +M + G   + +S+NV++ G C+  K
Sbjct: 513 LEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNK 571



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 154/337 (45%), Gaps = 43/337 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERAL 103
           N + Y+ +I    +A M +  +++  Q+  D   VP  ++  N +  G     R+   A+
Sbjct: 415 NTVTYNCLIDGYCKASMIEAARELFDQMNKDG--VPPNVVTLNTLVDGMCKHGRI-NGAV 471

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGC 162
           + F+EM    ++     +  L+        +++  ELF +++E   SPDA  Y  LI G 
Sbjct: 472 EFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGL 531

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             + +L+ A  V  +M +    P +V+F  LI G C + ++DEA ++ ++ M    +KPD
Sbjct: 532 SQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKE-MENAGIKPD 590

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRD------------------------------ 252
           G  + +LI      G+ S A  + ++MV++                              
Sbjct: 591 GVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFR 650

Query: 253 ------KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
                 K+  +  IY+ LI++L +  + +   +++ +MK +G KPN+ T+NA+  G  ++
Sbjct: 651 DMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEK 710

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
                AF ++D M +  C  + I+  ++   L   G+
Sbjct: 711 NWLSKAFELMDRMTEHACNPDYITMEILTEWLSAVGE 747



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 90/200 (45%), Gaps = 12/200 (6%)

Query: 156 NILIHGCVVSRRLEDAWKVFDEMV--KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           NILI       R++DA  + DEM+  K    P   T   +   L    +V  A+  +E +
Sbjct: 196 NILIDVLFRKGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIV 255

Query: 214 MRV-----YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
             V     + V P+      LI  LC  G    A  V   +++    M+A   ++L++AL
Sbjct: 256 GLVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTAL 315

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG---DKGCK 325
            +A        +L EMKE   +PN VT+  LI+  CK    + A  + ++M      G  
Sbjct: 316 GRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFL 375

Query: 326 ANP--ISYNVILGGLCKDGK 343
             P  I+YN ++ GLCK G+
Sbjct: 376 VEPDVITYNTLIDGLCKVGR 395


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 155/304 (50%), Gaps = 3/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + NL+ Y++II  L R     E  +IL ++ +     P E+ +  ++  Y +     
Sbjct: 74  KGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKG-FTPDEVTYNTLLNGYCKEGNFH 132

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
           +AL +  EM    V  +V  +  L+N       L+R  E F  M  + + P+  +Y  LI
Sbjct: 133 QALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLI 192

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G      L +A+++ +EM +    P++VT+   I+G C+  R++EAL + ++++    +
Sbjct: 193 DGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVE-KGL 251

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   ++++I G C  GEL  A  +K+EMV   +  DA  YSSLI  L +  R  E   
Sbjct: 252 APDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACD 311

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + +EM + G  P+  TY  LI+ +C E D   A  + DEM  KG   + ++Y+V++ GL 
Sbjct: 312 LSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLN 371

Query: 340 KDGK 343
           K  +
Sbjct: 372 KQAR 375



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 134/268 (50%), Gaps = 2/268 (0%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           +R+ P    +  +I  +     L++ L  F EM        V  +NTL++     G++D 
Sbjct: 4   SRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDE 63

Query: 137 MKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L + M  K + P+  SYN++I+G      +++AW++ +EM  +   P  VT+ TL+ 
Sbjct: 64  AFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLN 123

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C E    +AL +  +++R   V P    + +LI  +C    L+ A+   ++M    + 
Sbjct: 124 GYCKEGNFHQALVIHAEMVR-NGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLR 182

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            +   Y++LI    + G  NE   IL EM E G  P+ VTYNA I G C  E  E A  +
Sbjct: 183 PNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGV 242

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
           + EM +KG   + +SY+ I+ G C+ G+
Sbjct: 243 VQEMVEKGLAPDVVSYSTIISGFCRKGE 270



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 153/351 (43%), Gaps = 59/351 (16%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I  + +A+  +   +   Q++    + P E  +  +I  + R  LL  A ++
Sbjct: 149 SVVTYTALINSMCKARNLNRAMEFFDQMRIRG-LRPNERTYTTLIDGFSRQGLLNEAYRI 207

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF----QIMEKYVSPDACSYNILIHG 161
            +EM+      +V  +N  ++       L+RM+E      +++EK ++PD  SY+ +I G
Sbjct: 208 LNEMTESGFSPSVVTYNAFIHGHCV---LERMEEALGVVQEMVEKGLAPDVVSYSTIISG 264

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 L+ A+++  EMV++ + P  VT+ +LI GLC   R+ EA  L ++++ +  + P
Sbjct: 265 FCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDM-GLPP 323

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE----- 276
           D   + +LI   C  G+L+ AL + +EM+      DA  YS LI+ L K  R  E     
Sbjct: 324 DEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLL 383

Query: 277 --------FPA-------------------------------------ILKEMKERGCKP 291
                    P+                                     + + M ER  KP
Sbjct: 384 FKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKP 443

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
               YN +I G C+  +   AF +  EM   G   + ++   ++  L K+G
Sbjct: 444 GEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEG 494



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 1/163 (0%)

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M++ R+ P + T+  LI G C    + + L    ++ R     P+   + +LI   C +G
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMER-NGCLPNVVTYNTLIDAYCKMG 59

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
            +  A G+ + M    ++ +   Y+ +I+ L + G   E   IL+EM  +G  P+ VTYN
Sbjct: 60  RIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYN 119

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            L++G+CKE +F  A  I  EM   G   + ++Y  ++  +CK
Sbjct: 120 TLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCK 162



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 51/95 (53%)

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M+R ++  +   Y+ LI      G   +      EM+  GC PN VTYN LI  +CK   
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + AF +L  M  KG + N ISYNVI+ GLC++G 
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGS 95



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 122/287 (42%), Gaps = 20/287 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  II+   R    D   Q+  ++  +  + P  + + ++I      R L  A  +
Sbjct: 254 DVVSYSTIISGFCRKGELDRAFQMKQEMV-EKGVSPDAVTYSSLIQGLCEMRRLTEACDL 312

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             EM    +      + TL+N     G L++   L  +++ K   PDA +Y++LI+G   
Sbjct: 313 SQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNK 372

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY---------------GLCLELRVDEALKL 209
             R  +A ++  +++     P+ VT+ TLI                G C++  + EA ++
Sbjct: 373 QARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRV 432

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            E ++   N KP   V+  +I G C  G L  A  + +EM+            +LI ALF
Sbjct: 433 FESMVE-RNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALF 491

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTY-NALISGFCKEEDFEAAFTI 315
           K G   E   ++ +   R C+ N       L+    KE + EA   +
Sbjct: 492 KEGMNEEMSEVIGDTL-RSCRLNEAELAKVLVEINHKEGNMEAVLNV 537


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 156/296 (52%), Gaps = 3/296 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ ++  L +AK   +   I   +  +  +VP  + +  +I  + +   L RA +++ +M
Sbjct: 124 YNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQM 183

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
              N    V  +N  LN  +  G++   + +++ M     SPD  +Y+ LIHG  ++R+ 
Sbjct: 184 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKH 243

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A ++F+ M+ R  +P  VT+  L++GLC E + DEA +L   ++      PD   + +
Sbjct: 244 DQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVE-RGCDPDKVTYTT 302

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ G C VG++  A+ V +EMV    + D   Y+ L+   F+AG+  E   + + M  R 
Sbjct: 303 LLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRE 362

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEM-GDKGCKANPISYNVILGGLCKDGK 343
           CKP++V++N +I G  K +  + A  + + M  D GC  + ++YN ++ GLC + +
Sbjct: 363 CKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQR 418



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 130/260 (50%), Gaps = 5/260 (1%)

Query: 88  NVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY 147
           +VI    +A  ++ AL + + M        +   + L+N      K+   +E  Q M + 
Sbjct: 54  SVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRT 113

Query: 148 VSPDACS---YNILIHGCVVSRRLEDAWKVFDEMV-KRRLQPTLVTFGTLIYGLCLELRV 203
           +S  A S   YN L++    ++++  A+ +F  MV +R + P +V++  LI G C    +
Sbjct: 114 ISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDEL 173

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
             A KL + ++ + N  P+   + + + GL   G ++ A GV EEM+      D   YS+
Sbjct: 174 GRAEKLYKQMIDL-NCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYST 232

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LI     A + ++   + + M  RGC+PN+VTYN L+ G CKE   + A  +  +M ++G
Sbjct: 233 LIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERG 292

Query: 324 CKANPISYNVILGGLCKDGK 343
           C  + ++Y  +L G C  GK
Sbjct: 293 CDPDKVTYTTLLYGFCNVGK 312



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 111/230 (48%), Gaps = 2/230 (0%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I     A+  D+  ++   +       P  + +  ++    +    + A ++
Sbjct: 226 DVITYSTLIHGFSLARKHDQAHELFEAMI-SRGCRPNAVTYNCLLHGLCKESKPDEAHEL 284

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           F +M           + TLL      GK+++  E+F +++ K   PD  +YN L+ G   
Sbjct: 285 FRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFR 344

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + +  +A ++F  MV R  +P  V+   +I GL    R+D+A+++ E + + +   PD  
Sbjct: 345 AGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLV 404

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
            + SLI GLC    LS A+ V +E+ R K+  D   ++ L+ A++ AG K
Sbjct: 405 TYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAMYAAGHK 454



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 5/124 (4%)

Query: 225 VFASLIKGLCAVGELSLALG---VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
            + + + GLC  G++  A       +E +       +G   S+I  L KAGR +   ++L
Sbjct: 13  AWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSALSLL 72

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK-GCKANP-ISYNVILGGLC 339
           + M +RG  P+  T++ LI+  CK +  + A   L  M      +A+   SYN +L  LC
Sbjct: 73  ETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLNSLC 132

Query: 340 KDGK 343
           K  K
Sbjct: 133 KAKK 136


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 162/296 (54%), Gaps = 3/296 (1%)

Query: 49  HYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDE 108
           +Y+++I K  +     + + I ++++    + P  + F  +I    ++R L+   ++   
Sbjct: 225 YYNILINKFCKEGSIRDAKLIFNEIRKRG-LRPTTVSFNTLINGLCKSRNLDEGFRLKKT 283

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRR 167
           M    +   V  ++ L++     G+LD  ++LF ++ ++ + P+  ++  LI G   SRR
Sbjct: 284 MEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRR 343

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           ++ A   + +M+   ++P LV + TL+ GLC    V++A KL ++ M++  +KPD   + 
Sbjct: 344 MDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDE-MKMVGMKPDKITYT 402

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +LI G C  G+L  A+ +++ M  + + +D   +++LIS   + GR  +    L+EM E 
Sbjct: 403 TLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEA 462

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G KP+  TY  +I G+CK+ + +  F +L EM   G K   I+YNV++ GLCK G+
Sbjct: 463 GMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQ 518



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 147/317 (46%), Gaps = 18/317 (5%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQL-----KHDTRIVPKEI-----------IF 86
           FR+    Y  +   L   +MF E Q I+  L     K     V   I           +F
Sbjct: 97  FRHTSQSYCAMANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAGTRCSNFVF 156

Query: 87  CNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIME 145
             ++  Y  +  +  A+Q F  + + N Q+       LL+  +       +   + +I+E
Sbjct: 157 DALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILE 216

Query: 146 KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
               P    YNILI+       + DA  +F+E+ KR L+PT V+F TLI GLC    +DE
Sbjct: 217 YGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDE 276

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
             +LK+  M    + PD   ++ LI GLC  G L +A  + +EM +  +  +   +++LI
Sbjct: 277 GFRLKK-TMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALI 335

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
              +++ R +       +M   G KP+ V YN L++G CK  D   A  ++DEM   G K
Sbjct: 336 DGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMK 395

Query: 326 ANPISYNVILGGLCKDG 342
            + I+Y  ++ G CK+G
Sbjct: 396 PDKITYTTLIDGYCKEG 412



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 132/283 (46%), Gaps = 16/283 (5%)

Query: 43  FRYNLLHYDLIITKLGR----AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           F Y++L + L   K GR     ++FDEMQQ          + P  I F  +I    R+R 
Sbjct: 294 FTYSVLIHGL--CKEGRLDVAEQLFDEMQQ--------RGLRPNGITFTALIDGQYRSRR 343

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           ++ A+  + +M +  V+  +  +NTLLN     G +++ ++L   M+   + PD  +Y  
Sbjct: 344 MDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTT 403

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G      LE A ++   M +  +    V F  LI G C + RV +A +   +++   
Sbjct: 404 LIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEA- 462

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            +KPD   +  +I G C  G + +   + +EM  +  +     Y+ L++ L K G+    
Sbjct: 463 GMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNA 522

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
             +L+ M   G  P+ +TYN L+ G CK    E    + +E G
Sbjct: 523 NMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDLLKLRNEKG 565


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 156/300 (52%), Gaps = 3/300 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R +++ Y+ II  L + K+ +E      ++ +   I P  I +  +I  +  A  L  A 
Sbjct: 269 RPDVVMYNTIIDGLCKDKLVNEAYDFYTEM-NSRGIFPDVITYSTLICGFCLAGQLMGAF 327

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
            + +EM+  N+   V  +  L++     GKL   K L  +M K  V P+  +Y+ L+ G 
Sbjct: 328 SLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGY 387

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
            +   + +A ++F  MV+  + P++ ++  +I GLC    VDEA+ L  +++   NV P+
Sbjct: 388 CLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLH-KNVVPN 446

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + SLI GLC  G ++ AL + +E+       D   Y+SL+  L K    ++  A+  
Sbjct: 447 TVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFM 506

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +MKERG +PN  TY ALI G CK    + A  +   +  KGC  +  +YNV++GGLCK+G
Sbjct: 507 KMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEG 566



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 132/269 (49%), Gaps = 2/269 (0%)

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           D    P  +++  +I    + +L+  A   + EM+S  +   V  ++TL+      G+L 
Sbjct: 265 DRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLM 324

Query: 136 RMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
               L   M  K ++PD  +Y ILI       +L++A  +   M K  ++P +VT+ TL+
Sbjct: 325 GAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLM 384

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
            G CL   V  A ++   +++   V P    +  +I GLC    +  A+ +  EM+   +
Sbjct: 385 DGYCLVGEVHNAKQIFHAMVQT-EVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNV 443

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
             +   Y+SLI  L K+GR      ++KE+  RG   + +TY +L+ G CK ++ + A  
Sbjct: 444 VPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIA 503

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  +M ++G + N  +Y  ++ GLCK  +
Sbjct: 504 LFMKMKERGIQPNKYTYTALIDGLCKGAR 532



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 120/244 (49%), Gaps = 8/244 (3%)

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE------LFQIME-KYVSPDACSYNILI 159
           D +S FN  + ++   +++      G L +MK       L + ME K + PD  + +ILI
Sbjct: 115 DAVSQFNGMLLMRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILI 174

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +      ++  ++ V  +++K   QP  +   TL+ GLCL+  V ++L   + ++     
Sbjct: 175 NCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVV-AQGF 233

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           + +   + +L+ GLC +GE   A+ +   +       D  +Y+++I  L K    NE   
Sbjct: 234 QMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYD 293

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
              EM  RG  P+ +TY+ LI GFC       AF++L+EM  K    +  +Y +++  LC
Sbjct: 294 FYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALC 353

Query: 340 KDGK 343
           K+GK
Sbjct: 354 KEGK 357



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 123/260 (47%), Gaps = 35/260 (13%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
           L+ A  +   M+   V+  V  ++TL++     G++   K++F  M +  V+P  CSYNI
Sbjct: 358 LKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNI 417

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI---- 213
           +I+G    + +++A  +  EM+ + + P  VT+ +LI GLC   R+  AL L +++    
Sbjct: 418 MINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRG 477

Query: 214 ------------------------------MRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
                                         M+   ++P+   + +LI GLC    L  A 
Sbjct: 478 QPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQ 537

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            + + ++     +D   Y+ +I  L K G  +E  A+  +M++ GC P++VT+  +I   
Sbjct: 538 KLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSL 597

Query: 304 CKEEDFEAAFTILDEMGDKG 323
            ++++ + A  +L EM  KG
Sbjct: 598 FEKDENDKAEKLLHEMIAKG 617


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 162/307 (52%), Gaps = 14/307 (4%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F++  L Y ++I KLGR    D +Q +L Q+K +  I   E +F NVI  Y R  L E
Sbjct: 73  KAFQHTQLTYQIMIEKLGRECDVDGVQYLLQQMKLEG-ISCSEDLFINVINTYRRVGLAE 131

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILI 159
           +AL+MF  +  F  Q TVK +N LL+  L+  +   ++ ++  M++    P+  +YNIL+
Sbjct: 132 QALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILL 191

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
                + R++ A K+  EM  +  +P +V++ T+I  +    +V+EA +L          
Sbjct: 192 KALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELS------IRF 245

Query: 220 KPDGQVFASLIKGLC---AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           +P+  V+ +LI G C    V E+ L LG   +MV   I+ +   YS++IS+L   G    
Sbjct: 246 QPNVSVYNALINGFCREYKVKEVFLLLG---QMVEKGIDPNVITYSTVISSLSGIGNVEL 302

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
             A+  +M  RGC PN  T+ +L+ G+        A  I + M ++G + N ++YN ++ 
Sbjct: 303 ALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIH 362

Query: 337 GLCKDGK 343
           GLC  GK
Sbjct: 363 GLCSHGK 369



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 126/254 (49%), Gaps = 3/254 (1%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VS 149
           G++ R R+LE AL +++ M+    +  V  +NTL++   + GK+     +   ME+   S
Sbjct: 328 GYFMRGRVLE-ALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCS 386

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P+  +Y  LI G   +  L  A +++++M+     P +V + +++  LC      +A  L
Sbjct: 387 PNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSL 446

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            E  M   N  P+   F + IKGLC  G +  A+ +  +M +     +   Y+ ++  L 
Sbjct: 447 IEK-MSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLL 505

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           K  R  E   ++ EM+E+G + N VTYN +  GFC    FE A  +L +M   G K + I
Sbjct: 506 KENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAI 565

Query: 330 SYNVILGGLCKDGK 343
           +YN +    C  GK
Sbjct: 566 TYNTLTYAYCMQGK 579



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 146/302 (48%), Gaps = 14/302 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y++++  L +    D   ++L ++ +     P  + +  VI    +   +E A ++
Sbjct: 183 NVYTYNILLKALCKNNRVDGACKLLVEMSNKG-CEPDVVSYTTVISSMSKLGKVEEAREL 241

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF----QIMEKYVSPDACSYNILIHG 161
                S   Q  V  +N L+N    C +  ++KE+F    Q++EK + P+  +Y+ +I  
Sbjct: 242 -----SIRFQPNVSVYNALING--FCREY-KVKEVFLLLGQMVEKGIDPNVITYSTVISS 293

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 +E A  V+ +M  R   P + TF +L+ G  +  RV EAL +  + M     +P
Sbjct: 294 LSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNI-WNRMAEEGFEP 352

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   + +LI GLC+ G++  A+ V  +M R+    +   Y +LI    KAG       I 
Sbjct: 353 NVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIW 412

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            +M   GC PN V Y ++++  C+   F  A++++++M    C  N +++N  + GLC  
Sbjct: 413 NKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCS 472

Query: 342 GK 343
           G+
Sbjct: 473 GR 474



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 132/280 (47%), Gaps = 4/280 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y  +I    +A       +I +++  +   +P  +++ +++    R+ +  +A  +
Sbjct: 388 NVSTYGALIDGFAKAGDLVGASEIWNKMMTNG-CIPNVVVYTSMVNVLCRSSMFSQAWSL 446

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            ++MS+ N       FNT +      G+++    LF  ME+Y  SP+  +YN ++ G + 
Sbjct: 447 IEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLK 506

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R+++A ++  EM ++ ++  LVT+ T+  G C   + +EALKL    M V  VKPD  
Sbjct: 507 ENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGK-MLVGGVKPDAI 565

Query: 225 VFASLIKGLCAVGELSLALGVKEEM-VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
            + +L    C  G++  A+ + +++    K   +   Y+SL+  +       E    L +
Sbjct: 566 TYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDK 625

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           M   G   N+ T+NAL+ G            ILD++   G
Sbjct: 626 MLNEGICLNAATWNALVRGLFNSLGHLGPIHILDDILTSG 665


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 166/296 (56%), Gaps = 6/296 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+++I  L +    DE  ++ +++K + +  P    F ++I    +A     A ++F EM
Sbjct: 258 YNIMINGLCKLGKLDESMEMWNRMKKNEK-SPDLFTFSSMIHGLSKAGNFNAAEKVFQEM 316

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
               +   V+ +N +L+     GKL++  EL+ +M K    +  SYN+LI G + ++++E
Sbjct: 317 IESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCNIVSYNMLIQGLLDNKKVE 376

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA-- 227
            A   +  + +R L+    T+G LI GLC    +++AL++ E+     N   D   FA  
Sbjct: 377 QAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEE---AENEGADLDTFAYS 433

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           S++ GLC  G L  A+ +  +M +++ ++++ +++SLI+   +A +  E  ++L+EMK +
Sbjct: 434 SMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSK 493

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            C P  V+YN +I+G CK E F  A+  L EM ++G K + I+Y++++ GLC+  K
Sbjct: 494 DCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEK 549



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 169/370 (45%), Gaps = 48/370 (12%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L + +K+P  AL +F +   +P    AHP  PF   + H+  I+ +L   K+   + +I+
Sbjct: 16  LLKAEKNPNAALAIFDSACQHPG--YAHP--PF---VFHH--ILRRLMDPKLVVHVGRIV 66

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS-FNVQMTVKFFNTLLNP-- 127
             L    R    E +  + I  Y +  + ++AL +F  M   F     ++ FN++LN   
Sbjct: 67  -DLMRAQRCTCSEDVALSAIKAYAKCSMPDQALNLFQNMVDIFGCNPGIRSFNSMLNAFI 125

Query: 128 -------------------------------KLTCGK--LDRMKELFQIM-EKYVSPDAC 153
                                          K++C K   ++ K L   M E  ++PD  
Sbjct: 126 ESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDIL 185

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           SY  LI+    S  L DA ++FDEM  R + P ++ +  LI G   +    +A ++ + +
Sbjct: 186 SYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRL 245

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           +   +V P  + +  +I GLC +G+L  ++ +   M +++   D   +SS+I  L KAG 
Sbjct: 246 LTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGN 305

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            N    + +EM E G  P+  TYNA++SG  +       F + + M    C  N +SYN+
Sbjct: 306 FNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNC-CNIVSYNM 364

Query: 334 ILGGLCKDGK 343
           ++ GL  + K
Sbjct: 365 LIQGLLDNKK 374



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 145/293 (49%), Gaps = 3/293 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y L+I  L +    ++  +IL + +++   +     + +++    +  +LE+A+++  +M
Sbjct: 397 YGLLINGLCKNGYLNKALRILEEAENEGADL-DTFAYSSMVHGLCKKGMLEQAVELIHQM 455

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRL 168
                ++    FN+L+N  +   KL+    + + M+ K  +P   SYN +I+G   + R 
Sbjct: 456 KKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERF 515

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            DA+    EM++  L+P ++T+  LI GLC   +VD AL L    +    +KPD Q+   
Sbjct: 516 SDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCIN-KRLKPDLQMHNI 574

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I GLC   ++ +AL +  +M +     D   +++++  L+KAG   E   I   + E G
Sbjct: 575 IIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAG 634

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            +P+ ++YN    G C       A   L +  D+G   N  ++NV++  +  D
Sbjct: 635 LQPDIISYNITFKGLCSCARVSDAIEFLYDALDRGILPNAPTWNVLVRAVVDD 687



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 152/297 (51%), Gaps = 7/297 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILH-QLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           N++ Y+++I  L   K  +  Q I + QL H+  +      +  +I    +   L +AL+
Sbjct: 358 NIVSYNMLIQGLLDNKKVE--QAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALR 415

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILIHGCV 163
           + +E  +    +    ++++++     G L++  EL   M+K     ++  +N LI+G V
Sbjct: 416 ILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYV 475

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA-LKLKEDIMRVYNVKPD 222
            + +LE+A  V  EM  +   PT+V++ T+I GLC   R  +A L LKE  M    +KPD
Sbjct: 476 RAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKE--MLEEGLKPD 533

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              ++ LI GLC   ++ +AL +  + +  +++ D  +++ +I  L  A + +    I  
Sbjct: 534 MITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFT 593

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +M++  C P+ VT+N ++ G  K  D   A  I D + + G + + ISYN+   GLC
Sbjct: 594 QMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLC 650


>gi|125555457|gb|EAZ01063.1| hypothetical protein OsI_23091 [Oryza sativa Indica Group]
          Length = 552

 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 148/284 (52%), Gaps = 3/284 (1%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           +  D   +ILH++     + P +  +  V+     A  ++ A+ +  EM +  V +  + 
Sbjct: 97  RYLDVALRILHEIIPGWDLAPDKFTYSTVVSALADAGRVDDAVALVHEMVADGV-VAAEA 155

Query: 121 FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           FN +L   L  G +    +LF+ M+ K   P A +YN+L+HG +V  R   A  V   M 
Sbjct: 156 FNPVLRAMLRAGDVKGAAKLFEFMQLKGCVPTAATYNVLVHGLLVCGRAGAAMGVMRRME 215

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           +  + P ++T+G ++ GL    RV +A K+ E++ R   +  +  V++++I G C  GE+
Sbjct: 216 REGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMER-NGLARNEFVYSTVITGFCKSGEI 274

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             AL V E MV   +  +  +YS++I  L   G+  E   + +EM +  C PN +TY ++
Sbjct: 275 DCALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNIITYGSM 334

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I G+ K  D   A ++ +EM   GC  N +SY++++ GLC  G+
Sbjct: 335 IQGYFKIGDTSRALSVWEEMIGAGCMPNAVSYSILINGLCNVGR 378



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 166/342 (48%), Gaps = 17/342 (4%)

Query: 6   IRLACLPRLQKDPK----LALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAK 61
           ++  C   + +DP+    +AL++     P  +      L P ++    Y  +++ L  A 
Sbjct: 83  LKCVCSSLVPRDPRRYLDVALRILHEIIPGWD------LAPDKFT---YSTVVSALADAG 133

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
             D+   ++H++  D  +  +   F  V+    RA  ++ A ++F+ M       T   +
Sbjct: 134 RVDDAVALVHEMVADGVVAAEA--FNPVLRAMLRAGDVKGAAKLFEFMQLKGCVPTAATY 191

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           N L++  L CG+      + + ME+  V P   +Y  ++ G V   R++DAWKV +EM +
Sbjct: 192 NVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMER 251

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
             L      + T+I G C    +D ALK+ E  M    V+P+  +++++I GL   G+++
Sbjct: 252 NGLARNEFVYSTVITGFCKSGEIDCALKVWE-AMVASPVRPNVVLYSAMIGGLANFGKMT 310

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  +  EM+  K   +   Y S+I   FK G  +   ++ +EM   GC PN+V+Y+ LI
Sbjct: 311 EAELLFREMIDSKCAPNIITYGSMIQGYFKIGDTSRALSVWEEMIGAGCMPNAVSYSILI 370

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +G C     + A  +   M D+GC  + I+Y  ++ GLC  G
Sbjct: 371 NGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSG 412



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 106/263 (40%), Gaps = 37/263 (14%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y  +IT   ++   D   ++   +   + + P  +++  +IG       +  A  +
Sbjct: 257 NEFVYSTVITGFCKSGEIDCALKVWEAMVA-SPVRPNVVLYSAMIGGLANFGKMTEAELL 315

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           F EM        +  + +++      G   R   +++ ++     P+A SY+ILI+G   
Sbjct: 316 FREMIDSKCAPNIITYGSMIQGYFKIGDTSRALSVWEEMIGAGCMPNAVSYSILINGLCN 375

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             RL+DA  V+  M+ R   P  + + ++I GLC+   VD  L+L  D++   +  PD  
Sbjct: 376 VGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDVI 435

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  L+ GL    +L  A             MD                      +L  M
Sbjct: 436 SYNVLLDGLLLAKDLPRA-------------MD----------------------LLNRM 460

Query: 285 KERGCKPNSVTYNALISGFCKEE 307
            ++GC P++VT N  +  F   E
Sbjct: 461 LDQGCDPDTVTCNIFLREFGAGE 483


>gi|224063295|ref|XP_002301082.1| predicted protein [Populus trichocarpa]
 gi|222842808|gb|EEE80355.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 173/337 (51%), Gaps = 14/337 (4%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L + ++DP+ AL++F               K F +N   Y  II KL RAK F  +  +L
Sbjct: 56  LIKHERDPQHALEIFNLVVEQ---------KGFNHNHATYSTIIDKLARAKKFQAVDALL 106

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF-NVQMTVKFFNTLLNPKL 129
            Q+ ++T     E +F N++ ++ ++   ER ++MF+++      + ++K  +T LN  +
Sbjct: 107 RQMMYETCKF-HESLFLNLMKYFAKSSEFERVVEMFNKIQPIVREKPSLKAISTCLNLLV 165

Query: 130 TCGKLDRMKELFQIMEK--YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ-PT 186
              ++D ++     + K   + P+ C +NI I     S  LE A+ V  EM K  +  P 
Sbjct: 166 ESKQVDLLRGFLLDLNKDHMLKPNTCIFNIFIKYHCKSGDLESAFAVVKEMKKSSISYPN 225

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
           L+T+ TL+ GLC   R+ EA++L E+++    + PD   +  LI G    G++  A  + 
Sbjct: 226 LITYSTLMDGLCESGRLKEAIELFEEMVSKDQILPDALTYNVLINGFSCWGKVDRAKKIM 285

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           E M  +    +   YS+L+S   K GR  E     +EMK  G K ++V Y  LI+ FC+ 
Sbjct: 286 EFMKSNGCSPNVFNYSALMSGFCKEGRLEEAMDAFEEMKIFGLKQDTVGYTILINYFCRF 345

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              + A  +L+EM +  CKA+ ++ NV+L G C +G+
Sbjct: 346 GRIDEAMALLEEMKETKCKADIVTVNVLLRGFCGEGR 382



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 146/308 (47%), Gaps = 6/308 (1%)

Query: 38  HPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           H LKP   N   +++ I    ++   +    ++ ++K  +   P  I +  ++     + 
Sbjct: 184 HMLKP---NTCIFNIFIKYHCKSGDLESAFAVVKEMKKSSISYPNLITYSTLMDGLCESG 240

Query: 98  LLERALQMFDEMSSFNVQMTVKF-FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSY 155
            L+ A+++F+EM S +  +     +N L+N     GK+DR K++ + M+    SP+  +Y
Sbjct: 241 RLKEAIELFEEMVSKDQILPDALTYNVLINGFSCWGKVDRAKKIMEFMKSNGCSPNVFNY 300

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           + L+ G     RLE+A   F+EM    L+   V +  LI   C   R+DEA+ L E+ M+
Sbjct: 301 SALMSGFCKEGRLEEAMDAFEEMKIFGLKQDTVGYTILINYFCRFGRIDEAMALLEE-MK 359

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
               K D      L++G C  G    ALG+   +  + I ++   Y  ++++L + G  +
Sbjct: 360 ETKCKADIVTVNVLLRGFCGEGRTEEALGMLNRLSSEGIYLNKASYRIVLNSLCQKGDLD 419

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +   +L     RG  P+  T N L+ G CK    + A   L  + + G K    S+ +++
Sbjct: 420 KALELLGLTLSRGFVPHHATSNELLVGLCKAGMADDAVVALYGLAEMGFKPEQDSWALLV 479

Query: 336 GGLCKDGK 343
             +C++ K
Sbjct: 480 EFVCRERK 487


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 154/304 (50%), Gaps = 5/304 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-IVPKEIIFCNVIGFYGRARLL 99
           +  R N++ Y+ II  L + K+ +E   +  ++  D R I P  I +  +I  +     L
Sbjct: 144 RSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEM--DARGIFPDAITYTTLIYGFCLLGQL 201

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
             A  + DEM   N+   V  +N L+N     G +   K L  +M K  + P   +Y+ L
Sbjct: 202 MGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTL 261

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           + G  +   +++A ++F  MV+  + P + ++  +I GLC   RVDEA+ L  +++   N
Sbjct: 262 MDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLH-KN 320

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   + SLI GLC  G ++ AL +  EM       D   Y+SL+ AL K    ++  
Sbjct: 321 MVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKAT 380

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           A+  +MKERG +P   TY ALI G CK    + A  +   +  KGC  +  +Y V++ GL
Sbjct: 381 ALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGL 440

Query: 339 CKDG 342
           CK+G
Sbjct: 441 CKEG 444



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 135/278 (48%), Gaps = 35/278 (12%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           ++++L   D++ +   QM    + TLLN     G+     +L +++E +   P+   YN 
Sbjct: 96  VKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNT 155

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM--- 214
           +I G    + + +A+ ++ EM  R + P  +T+ TLIYG CL  ++  A  L ++++   
Sbjct: 156 IIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKN 215

Query: 215 -----RVYN--------------------------VKPDGQVFASLIKGLCAVGELSLAL 243
                 +YN                          +KP    +++L+ G C VGE+  A 
Sbjct: 216 INPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAK 275

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            +   MV+  +  +   Y+ +I+ L K  R +E   +L+EM  +   P++VTYN+LI G 
Sbjct: 276 QIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGL 335

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           CK     +A  +++EM  +G  A+ ++Y  +L  LCK+
Sbjct: 336 CKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKN 373



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 134/275 (48%), Gaps = 2/275 (0%)

Query: 70  LHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL 129
           L ++  D    P  +++  +I    + +L+  A  ++ EM +  +      + TL+    
Sbjct: 137 LLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFC 196

Query: 130 TCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
             G+L     L  +++ K ++P    YNILI+       +++A  +   M K  ++P +V
Sbjct: 197 LLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVV 256

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           T+ TL+ G CL   V  A ++   ++++  V P+   +  +I GLC    +  A+ +  E
Sbjct: 257 TYSTLMDGYCLVGEVQNAKQIFHAMVQM-GVNPNVYSYNIMINGLCKCKRVDEAMNLLRE 315

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M+   +  D   Y+SLI  L K+GR      ++ EM  RG   + VTY +L+   CK ++
Sbjct: 316 MLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQN 375

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + A  +  +M ++G +    +Y  ++ GLCK G+
Sbjct: 376 LDKATALFMKMKERGIQPTMYTYTALIDGLCKGGR 410



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 135/275 (49%), Gaps = 3/275 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+++I  L +     E + +L  +  +  I P  + +  ++  Y     ++ A Q+F  M
Sbjct: 223 YNILINALCKEGNVKEAKNLLAVMTKEG-IKPGVVTYSTLMDGYCLVGEVQNAKQIFHAM 281

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168
               V   V  +N ++N    C ++D  M  L +++ K + PD  +YN LI G   S R+
Sbjct: 282 VQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRI 341

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
             A  + +EM  R     +VT+ +L+  LC    +D+A  L    M+   ++P    + +
Sbjct: 342 TSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMK-MKERGIQPTMYTYTA 400

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI GLC  G L  A  + + ++     +D   Y+ +IS L K G  +E  AI  +M++ G
Sbjct: 401 LIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNG 460

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           C PN+VT+  +I    ++++ + A  +L EM  KG
Sbjct: 461 CIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKG 495



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 129/300 (43%), Gaps = 37/300 (12%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD- 135
            R  P  I F  ++G   + +    A+ +  +M    ++      N L+N     G++  
Sbjct: 4   VRHTPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAF 63

Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
               L +I++    PD  + N L+ G  +   ++ +    D++V +  Q   V++GTL+ 
Sbjct: 64  SFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLN 123

Query: 196 GLC--------------LELR---------------------VDEALKLKEDIMRVYNVK 220
           GLC              +E R                     V+EA  L  + M    + 
Sbjct: 124 GLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSE-MDARGIF 182

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   + +LI G C +G+L  A  + +EM+   I     IY+ LI+AL K G   E   +
Sbjct: 183 PDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNL 242

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L  M + G KP  VTY+ L+ G+C   + + A  I   M   G   N  SYN+++ GLCK
Sbjct: 243 LAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCK 302



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 95/195 (48%), Gaps = 1/195 (0%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           +P    +N ++      ++   A  +  +M  + ++   VT   LI   C   ++  +  
Sbjct: 7   TPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFS 66

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           +   I+++   +PD     +L+KGLC  GE+  +L   +++V    +MD   Y +L++ L
Sbjct: 67  VLGKILKL-GYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGL 125

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K G       +L+ +++R  +PN V YN +I G CK++    A+ +  EM  +G   + 
Sbjct: 126 CKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDA 185

Query: 329 ISYNVILGGLCKDGK 343
           I+Y  ++ G C  G+
Sbjct: 186 ITYTTLIYGFCLLGQ 200


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 159/300 (53%), Gaps = 6/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y+++I  L +   FDE  +I H++K + R          + G  G   L + A ++
Sbjct: 254 NIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNL-DGATRV 312

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
           + EM+   V   V  +NT+LN  L  G+++   EL+++MEK       SYNILI G   +
Sbjct: 313 YKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFEN 372

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            ++++A  +++ + ++      +T+G L++GLC    +++AL + E+     N + D   
Sbjct: 373 AKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEE---AENGRGDLDT 429

Query: 226 FA--SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
           FA  S+I GLC  G L    GV ++M +   + +  + +++I+   +A +  +       
Sbjct: 430 FAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGN 489

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M  +GC P  VTYN LI+G  K E F  A+ ++ EM  KG K N I+Y++++ GLC+  K
Sbjct: 490 MVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKK 549



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 160/366 (43%), Gaps = 73/366 (19%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL  Y+++I    R K FD+ +++L+ +  +    P    +  +I    +   +  AL++
Sbjct: 148 NLQTYNILIKISCRKKQFDKAKELLNWM-WEQGFSPDVFSYGTLINSLAKNGYMSDALKL 206

Query: 106 FDEM---------SSFNVQM---------------------------TVKFFNTLLNPKL 129
           FDEM         + +N+ +                            +  +N ++N   
Sbjct: 207 FDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLC 266

Query: 130 TCGKLDRMKELFQIMEKYV-SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
            CGK D   E++  M+K     D  +Y+ LIHG   S  L+ A +V+ EM +  + P +V
Sbjct: 267 KCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVV 326

Query: 189 TFGTLIYGL--------CLEL--------------------------RVDEALKLKEDIM 214
            + T++ G         CLEL                          +VDEA+ + E ++
Sbjct: 327 VYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWE-LL 385

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
              +   D   +  L+ GLC  G L+ AL + EE    + ++D   YSS+I+ L + GR 
Sbjct: 386 PEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRL 445

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +E   +L +M + GCKPN    NA+I+GF +    E A      M  KGC    ++YN +
Sbjct: 446 DEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTL 505

Query: 335 LGGLCK 340
           + GL K
Sbjct: 506 INGLSK 511



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 129/242 (53%), Gaps = 2/242 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           L +AL + +E  +    +    +++++N     G+LD +  +   M K+   P+    N 
Sbjct: 410 LNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNA 469

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I+G V + +LEDA + F  MV +   PT+VT+ TLI GL    R  EA  L ++++   
Sbjct: 470 VINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLH-K 528

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             KP+   ++ L+ GLC   +L +AL +  + +    + D  +++ +I  L  +G+  + 
Sbjct: 529 GWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDA 588

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +  EMK+R C PN VT+N L+ GF K  DFE A  I D +   G + + ISYN+ L G
Sbjct: 589 LQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITLKG 648

Query: 338 LC 339
           LC
Sbjct: 649 LC 650



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 184/414 (44%), Gaps = 83/414 (20%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRA 60
           K  S  R+  L + +K+P  AL +F +    P     +   P+   + H+  I+ +L   
Sbjct: 6   KSLSPKRVIKLLKSEKNPHSALSIFDSVTRFP----GYSHTPY---VFHH--ILKRLFDP 56

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS-FNVQMTVK 119
           K+   + +I+  ++      P+++    VI  Y +  + ++AL +F  M   F  Q  ++
Sbjct: 57  KLVAHVSRIVELIRTQKCKCPEDVAL-TVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIR 115

Query: 120 FFNTLLNP---------------------------------KLTCGK--LDRMKELFQIM 144
            +N+LLN                                  K++C K   D+ KEL   M
Sbjct: 116 SYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWM 175

Query: 145 -EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
            E+  SPD  SY  LI+    +  + DA K+FDEM +R + P +  +  LI G   +  +
Sbjct: 176 WEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDI 235

Query: 204 DEALKLKEDIMRVYNVKPD--------------------------------GQ---VFAS 228
             A ++ E +++  +V P+                                GQ    +++
Sbjct: 236 LNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYST 295

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI GLC  G L  A  V +EM  + +  D  +Y+++++   +AGR  E   + K M++ G
Sbjct: 296 LIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEG 355

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           C+   V+YN LI G  +    + A +I + + +K C A+ ++Y V++ GLCK+G
Sbjct: 356 CR-TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNG 408



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 128/295 (43%), Gaps = 40/295 (13%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCN-VIGFYGRARLLERALQMFD 107
           Y  +I  L R    DE+  +L Q+ KH  +  P     CN VI  + RA  LE AL+ F 
Sbjct: 432 YSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPH---VCNAVINGFVRASKLEDALRFFG 488

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRR 167
            M S                                  K   P   +YN LI+G   + R
Sbjct: 489 NMVS----------------------------------KGCFPTVVTYNTLINGLSKAER 514

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
             +A+ +  EM+ +  +P ++T+  L+ GLC   ++D AL L    +     KPD ++  
Sbjct: 515 FSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALE-KGFKPDVKMHN 573

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            +I GLC+ G++  AL +  EM + K   +   +++L+   +K         I   + + 
Sbjct: 574 IIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQY 633

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           G +P+ ++YN  + G C       A   L++  D+G     I++N+++  +  +G
Sbjct: 634 GPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVRAVLDNG 688


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 160/298 (53%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ +  +I    R    D     L ++K    +VP  +I+  VIG + RA  +  AL++
Sbjct: 296 DVVSFSCLIGLFSRRGEMDHAGAYLREMK-GLGLVPDGVIYTMVIGGFCRAGSMSEALRV 354

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
            DEM  F     V  +NTLLN      +L D  K L ++ E+ V+PD C++  LIHG   
Sbjct: 355 RDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCR 414

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
               E+A ++FD ++++RL+P +VT+ +LI G+C +  + +A +L +D M    + P+  
Sbjct: 415 QGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDD-MHAREILPNHI 473

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++ LI   C  G++  A G  +EMV+     +   Y+S+I    ++G   +    L++M
Sbjct: 474 TYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKM 533

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++    P+ +T+N LI G+ KEE+   AF + + M  +  + + ++YN+I+ G  + G
Sbjct: 534 RQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQG 591



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 153/283 (54%), Gaps = 7/283 (2%)

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNV-IGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
           FD    ++ ++  + R V  +++  NV I    RA  ++ A+ + D M++  ++  +  +
Sbjct: 173 FDGADTVISEM--EKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTY 230

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           N++L       + D+ KE+F+ M++  V+PD  S+NILI G      +++A K + EM  
Sbjct: 231 NSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQH 290

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEA-LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           R + P +V+F  LI        +D A   L+E  M+   + PDG ++  +I G C  G +
Sbjct: 291 RYVTPDVVSFSCLIGLFSRRGEMDHAGAYLRE--MKGLGLVPDGVIYTMVIGGFCRAGSM 348

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
           S AL V++EMV      D   Y++L++ L K  R  +   +L EM+ERG  P+  T+  L
Sbjct: 349 SEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTL 408

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           I G+C++ +FE A  + D +  +  + + ++YN ++ G+C+ G
Sbjct: 409 IHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKG 451



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 149/304 (49%), Gaps = 6/304 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP    ++ Y+ ++  L + + FD+ +++   +     + P    F  +IG + R   +
Sbjct: 223 LKP---GIVTYNSVLKGLCKHRRFDKAKEVFRTMDQ-CSVAPDVRSFNILIGGFCRVGEV 278

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
           + A++ + EM    V   V  F+ L+      G++D      + M+   + PD   Y ++
Sbjct: 279 KEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMV 338

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   +  + +A +V DEMV     P +VT+ TL+ GLC + R+ +A KL  + M    
Sbjct: 339 IGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNE-MEERG 397

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V PD   F +LI G C  G    AL + + ++R ++  D   Y+SLI  + + G   +  
Sbjct: 398 VTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKAN 457

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +  +M  R   PN +TY+ LI   C++   E AF  LDEM  KG   N  +YN I+ G 
Sbjct: 458 ELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGY 517

Query: 339 CKDG 342
           C+ G
Sbjct: 518 CRSG 521



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 138/279 (49%), Gaps = 3/279 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ ++  L +     + +++L++++ +  + P    F  +I  Y R    E ALQ+
Sbjct: 366 DVVTYNTLLNGLCKQHRLLDAEKLLNEME-ERGVTPDLCTFTTLIHGYCRQGNFENALQL 424

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           FD +    ++  V  +N+L++     G L +  EL+  M  + + P+  +Y+ILI     
Sbjct: 425 FDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCE 484

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             ++EDA+   DEMVK+   P + T+ ++I G C    V +  +  +  MR  NV PD  
Sbjct: 485 KGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQK-MRQDNVFPDLI 543

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G      +  A  V   M ++ +  DA  Y+ +I+   + G   +   + K M
Sbjct: 544 TFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGM 603

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
            + G +P+  TY +LI+G     + + AF + DEM  +G
Sbjct: 604 GDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRG 642



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 127/297 (42%), Gaps = 37/297 (12%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
            P+  +F  +I  Y ++R    A + F  +    V +     N LL      G     +E
Sbjct: 84  TPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQE 143

Query: 140 LFQ-IMEKYVSPDACSYNILIHG--------------------CVV-------------- 164
            ++ ++      +A + NI++H                     CV               
Sbjct: 144 AYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARF 203

Query: 165 -SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            +  ++ A  + D M  R L+P +VT+ +++ GLC   R D+A ++    M   +V PD 
Sbjct: 204 RAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFR-TMDQCSVAPDV 262

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
           + F  LI G C VGE+  A+   +EM    +  D   +S LI    + G  +   A L+E
Sbjct: 263 RSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLRE 322

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           MK  G  P+ V Y  +I GFC+      A  + DEM   GC  + ++YN +L GLCK
Sbjct: 323 MKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCK 379



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 91/199 (45%), Gaps = 9/199 (4%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           +P    +++LI     SR+  +A++ F  ++  R+ P   +    +  +   L       
Sbjct: 84  TPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRV-PVPASASNALLAV---LSRAGWPH 139

Query: 209 LKEDIMRVYNVKPDGQVFAS----LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           L ++  R+  +  D +V A     ++   C   E   A  V  EM +  +  D   ++ L
Sbjct: 140 LAQEAYRLV-LSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVL 198

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           I A F+AG  +   A++  M  RG KP  VTYN+++ G CK   F+ A  +   M     
Sbjct: 199 IDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSV 258

Query: 325 KANPISYNVILGGLCKDGK 343
             +  S+N+++GG C+ G+
Sbjct: 259 APDVRSFNILIGGFCRVGE 277


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 151/289 (52%), Gaps = 9/289 (3%)

Query: 56  KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ 115
           ++G+ K    + +IL Q    +  VP  I +  +I  Y ++  ++ ALQ+ D M   NV 
Sbjct: 161 RIGKTKKATWVMEILEQ----SGAVPDVITYNVLISGYCKSGEIDNALQVLDRM---NVA 213

Query: 116 MTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKV 174
             V  +NT+L      GKL + M+ L + ++K   PD  +Y ILI        +  A K+
Sbjct: 214 PDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKL 273

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
            DEM  +  +P +VT+  LI G+C E R+DEA+K   + M  Y  +P+      +++ +C
Sbjct: 274 LDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNN-MPSYGCQPNVITHNIILRSMC 332

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
           + G    A  +  +M+R         ++ LI+ L + G       IL++M   GC PNS+
Sbjct: 333 STGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSL 392

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +YN L+ GFCKE+  + A   LD M  +GC  + ++YN +L  LCKDGK
Sbjct: 393 SYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGK 441



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 151/300 (50%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKL-GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +++ Y+ I+  L    K+   M+ +  QL+ +    P  I +  +I    +   + +A++
Sbjct: 215 DVVTYNTILRTLCDSGKLKQAMEVLDRQLQKEC--YPDVITYTILIEATCKESGVGQAMK 272

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV 163
           + DEM +   +  V  +N L+N     G+LD   +    M  Y   P+  ++NI++    
Sbjct: 273 LLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMC 332

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            + R  DA K+  +M+++   P++VTF  LI  LC +  +  A+ + E  M ++   P+ 
Sbjct: 333 STGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEK-MPMHGCTPNS 391

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             +  L+ G C   ++  A+   + MV      D   Y++L++AL K G+ +    IL +
Sbjct: 392 LSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 451

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  +GC P  +TYN +I G  K    E A  +LDEM  KG K + I+Y+ ++ GL ++GK
Sbjct: 452 LSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGK 511



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 151/300 (50%), Gaps = 7/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERAL 103
           +++ Y+++I  + +    DE  + L+ +   +      +I  N+I        R ++ A 
Sbjct: 285 DVVTYNVLINGICKEGRLDEAIKFLNNMP--SYGCQPNVITHNIILRSMCSTGRWMD-AE 341

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
           ++  +M       +V  FN L+N     G L R  ++ + M  +  +P++ SYN L+HG 
Sbjct: 342 KLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGF 401

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
              ++++ A +  D MV R   P +VT+ TL+  LC + +VD A+++    +      P 
Sbjct: 402 CKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ-LSSKGCSPV 460

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + ++I GL  VG+   A+ + +EM R  ++ D   YSSL+S L + G+ +E      
Sbjct: 461 LITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFH 520

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +++  G +PN++TYN+++ G CK    + A   L  M  K CK    +Y +++ G+  +G
Sbjct: 521 DLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEG 580



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 108/212 (50%), Gaps = 10/212 (4%)

Query: 137 MKELFQIMEKYVS----PDACSYNILIHG-CVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           +++ F+ +E  V     PD      LI G C + +  +  W V + + +    P ++T+ 
Sbjct: 130 LEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATW-VMEILEQSGAVPDVITYN 188

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
            LI G C    +D AL+    ++   NV PD   + ++++ LC  G+L  A+ V +  ++
Sbjct: 189 VLISGYCKSGEIDNALQ----VLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQ 244

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
            +   D   Y+ LI A  K     +   +L EM+ +G KP+ VTYN LI+G CKE   + 
Sbjct: 245 KECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDE 304

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           A   L+ M   GC+ N I++N+IL  +C  G+
Sbjct: 305 AIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 336



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 140/292 (47%), Gaps = 6/292 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           N+  ++  +P   N++ +++I+  +     + + +++L  +       P  + F  +I F
Sbjct: 310 NNMPSYGCQP---NVITHNIILRSMCSTGRWMDAEKLLSDMLRKG-CSPSVVTFNILINF 365

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPD 151
             R  LL RA+ + ++M           +N LL+      K+DR  E   IM  +   PD
Sbjct: 366 LCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPD 425

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +YN L+       +++ A ++ +++  +   P L+T+ T+I GL    + + A+KL +
Sbjct: 426 IVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLD 485

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           + MR   +KPD   ++SL+ GL   G++  A+    ++    I  +A  Y+S++  L K+
Sbjct: 486 E-MRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKS 544

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
            + +     L  M  + CKP   TY  LI G   E   + A  +L+E+  +G
Sbjct: 545 RQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRG 596



 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 39/76 (51%)

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L + G   +    L+ M  RG  P+ +   +LI GFC+    + A  +++ +   G   +
Sbjct: 124 LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 183

Query: 328 PISYNVILGGLCKDGK 343
            I+YNV++ G CK G+
Sbjct: 184 VITYNVLISGYCKSGE 199


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 159/300 (53%), Gaps = 6/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y+++I  L +   FDE  +I H++K + R          + G  G   L + A ++
Sbjct: 254 NIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNL-DGATRV 312

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
           + EM+   V   V  +NT+LN  L  G+++   EL+++MEK       SYNILI G   +
Sbjct: 313 YKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFEN 372

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            ++++A  +++ + ++      +T+G L++GLC    +++AL + E+     N + D   
Sbjct: 373 AKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEE---AENGRGDLDT 429

Query: 226 FA--SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
           FA  S+I GLC  G L    GV ++M +   + +  + +++I+   +A +  +       
Sbjct: 430 FAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGN 489

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M  +GC P  VTYN LI+G  K E F  A+ ++ EM  KG K N I+Y++++ GLC+  K
Sbjct: 490 MVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKK 549



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 160/366 (43%), Gaps = 73/366 (19%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL  Y+++I    R K FD+ +++L+ +  +    P    +  +I    +   +  AL++
Sbjct: 148 NLQTYNILIKISCRKKQFDKAKELLNWM-WEQGFSPDVFSYGTLINSLAKNGYMSDALKL 206

Query: 106 FDEM---------SSFNVQM---------------------------TVKFFNTLLNPKL 129
           FDEM         + +N+ +                            +  +N ++N   
Sbjct: 207 FDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLC 266

Query: 130 TCGKLDRMKELFQIMEKYV-SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
            CGK D   E++  M+K     D  +Y+ LIHG   S  L+ A +V+ EM +  + P +V
Sbjct: 267 KCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVV 326

Query: 189 TFGTLIYGL--------CLEL--------------------------RVDEALKLKEDIM 214
            + T++ G         CLEL                          +VDEA+ + E ++
Sbjct: 327 VYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWE-LL 385

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
              +   D   +  L+ GLC  G L+ AL + EE    + ++D   YSS+I+ L + GR 
Sbjct: 386 PEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRL 445

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +E   +L +M + GCKPN    NA+I+GF +    E A      M  KGC    ++YN +
Sbjct: 446 DEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTL 505

Query: 335 LGGLCK 340
           + GL K
Sbjct: 506 INGLSK 511



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 173/380 (45%), Gaps = 48/380 (12%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRA 60
           K  S  R+  L + +K+P  AL +F +    P     +   P+   + H+  I+ +L   
Sbjct: 6   KSLSPKRVIKLLKSEKNPHSALSIFDSVTRFP----GYSHTPY---VFHH--ILKRLFDP 56

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS-FNVQMTVK 119
           K+   + +I+  ++      P+++    VI  Y +  + ++AL +F  M   F  Q  ++
Sbjct: 57  KLVAHVSRIVELIRTQKCKCPEDVAL-TVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIR 115

Query: 120 FFNTLLNP---------------------------------KLTCGK--LDRMKELFQIM 144
            +N+LLN                                  K++C K   D+ KEL   M
Sbjct: 116 SYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWM 175

Query: 145 -EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
            E+  SPD  SY  LI+    +  + DA K+FDEM +R + P +  +  LI G   +  +
Sbjct: 176 WEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDI 235

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
             A ++ E +++  +V P+   +  +I GLC  G+   +  +   M +++   D   YS+
Sbjct: 236 LNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYST 295

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LI  L  +G  +    + KEM E G  P+ V YN +++G+ +    E    +   M  +G
Sbjct: 296 LIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEG 355

Query: 324 CKANPISYNVILGGLCKDGK 343
           C+   +SYN+++ GL ++ K
Sbjct: 356 CRT-VVSYNILIRGLFENAK 374



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 119/230 (51%), Gaps = 2/230 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           L +AL + +E  +    +    +++++N     G+LD +  +   M K+   P+    N 
Sbjct: 410 LNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNA 469

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I+G V + +LEDA + F  MV +   PT+VT+ TLI GL    R  EA  L ++++   
Sbjct: 470 VINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHK- 528

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             KP+   ++ L+ GLC   +L +AL +  + +    + D  +++ +I  L  +G+  + 
Sbjct: 529 GWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDA 588

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
             +  EMK+R C PN VT+N L+ GF K  DFE A  I D +      +N
Sbjct: 589 LQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQSWSSSN 638



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 91/207 (43%), Gaps = 41/207 (19%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCN-VIGFYGRARLLERALQMFD 107
           Y  +I  L R    DE+  +L Q+ KH  +  P     CN VI  + RA  LE AL+ F 
Sbjct: 432 YSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPH---VCNAVINGFVRASKLEDALRFFG 488

Query: 108 EMSSFNVQMTVKFFNTLLN------------------------PKLTC-----------G 132
            M S     TV  +NTL+N                        P +              
Sbjct: 489 NMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGK 548

Query: 133 KLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           KLD    L+ Q +EK   PD   +NI+IHG   S ++EDA +++ EM +R+  P LVT  
Sbjct: 549 KLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHN 608

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYN 218
           TL+ G       + A K+ + I++ ++
Sbjct: 609 TLMEGFYKVRDFERASKIWDHILQSWS 635


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 157/303 (51%), Gaps = 18/303 (5%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS-- 110
           ++T L R   F+ M +++ ++  +  I P  + F  +I    + R ++ AL++ ++MS  
Sbjct: 311 LLTGLAREGNFNRMNELMEKMV-EMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGG 369

Query: 111 ------SFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-----PDACSYNILI 159
                 S +V+  V  +NTL++    C K+ R +E   +ME+  S     PD  +YN LI
Sbjct: 370 KESGGISVSVEPDVVIYNTLIDG--LC-KVGRQQEGLGLMERMRSQKGCAPDTITYNCLI 426

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G   +  +E   ++FDEM K  + P +VT  TL+ G+C   RV  A+    +  R   +
Sbjct: 427 DGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQR-RGM 485

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           K D   + +LI   C V     A+ +  EM++     DA +Y +LIS   +AGR  +   
Sbjct: 486 KGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASF 545

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +L E+K+ G +P++V YN LI GFC+   F   F +L EM + G K + I+YN ++    
Sbjct: 546 VLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYAS 605

Query: 340 KDG 342
           K+G
Sbjct: 606 KNG 608



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 122/258 (47%), Gaps = 9/258 (3%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDAC 153
           R R   R   +F EM      +     N+LL      G  +RM EL + M E  + P+  
Sbjct: 282 RNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVV 341

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEM--------VKRRLQPTLVTFGTLIYGLCLELRVDE 205
           ++ ILI+     RR++DA +V ++M        +   ++P +V + TLI GLC   R  E
Sbjct: 342 TFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQE 401

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
            L L E +       PD   +  LI G C  GE+     + +EM ++ +  +    ++L+
Sbjct: 402 GLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLV 461

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
             + + GR +       E + RG K ++VTY ALI+ FC   +FE A  + +EM   GC 
Sbjct: 462 GGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCS 521

Query: 326 ANPISYNVILGGLCKDGK 343
            + I Y  ++ G  + G+
Sbjct: 522 PDAIVYYTLISGFSQAGR 539



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 136/336 (40%), Gaps = 45/336 (13%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           + Y+ +I    +A   ++ +++  ++  +  + P  +    ++G   R   +  A+  F 
Sbjct: 420 ITYNCLIDGFCKAGEIEKGKELFDEMNKEG-VAPNVVTVNTLVGGMCRTGRVSSAVNFFV 478

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSR 166
           E     ++     +  L+N        ++  ELF ++++   SPDA  Y  LI G   + 
Sbjct: 479 EAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAG 538

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE---LRVDEALKLKEDIMRVYNVKPDG 223
           R+ DA  V  E+ K  ++P  V + TLI G C      RV E LK  E+      +KPD 
Sbjct: 539 RMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEA----GLKPDT 594

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +LI      G+L  A  V  +M++  +      Y ++I+A    G  NE   I K+
Sbjct: 595 ITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKD 654

Query: 284 MKER------------------------------------GCKPNSVTYNALISGFCKEE 307
           MK                                      G  PN+ TYNA+  G   E+
Sbjct: 655 MKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEK 714

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           D E  F  +D M +  C  + I+  ++   L   G+
Sbjct: 715 DLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGE 750



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 99/206 (48%), Gaps = 19/206 (9%)

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRR----LQPTLVTFGTLIYGLCLELRVDEALKLKE 211
           N+ +   + S R++DA KV DEM +       +P   T G +++   L+   +E L  ++
Sbjct: 194 NVWLSILLRSGRVKDALKVIDEMFESNDDSNCRPNDAT-GDILFSFLLKRERNEELLSED 252

Query: 212 DIMR-VYNVKPDGQVFAS-----LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           +I+  V      G + +S     LI  LC   + +    +  EM++    +++   +SL+
Sbjct: 253 EIVNLVLKFGEHGVLISSFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLL 312

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM-GDKGC 324
           + L + G  N    ++++M E   +PN VT+  LI+  CK    + A  +L++M G K  
Sbjct: 313 TGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKES 372

Query: 325 KANPIS-------YNVILGGLCKDGK 343
               +S       YN ++ GLCK G+
Sbjct: 373 GGISVSVEPDVVIYNTLIDGLCKVGR 398


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 151/289 (52%), Gaps = 9/289 (3%)

Query: 56  KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ 115
           ++G+ K    + +IL Q    +  VP  I +  +I  Y ++  ++ ALQ+ D M   NV 
Sbjct: 104 RIGKTKKATWVMEILEQ----SGAVPDVITYNVLISGYCKSGEIDNALQVLDRM---NVA 156

Query: 116 MTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKV 174
             V  +NT+L      GKL + M+ L + ++K   PD  +Y ILI        +  A K+
Sbjct: 157 PDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKL 216

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
            DEM  +  +P +VT+  LI G+C E R+DEA+K   + M  Y  +P+      +++ +C
Sbjct: 217 LDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNN-MPSYGCQPNVITHNIILRSMC 275

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
           + G    A  +  +M+R         ++ LI+ L + G       IL++M   GC PNS+
Sbjct: 276 STGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSL 335

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +YN L+ GFCKE+  + A   LD M  +GC  + ++YN +L  LCKDGK
Sbjct: 336 SYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGK 384



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 151/300 (50%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKL-GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +++ Y+ I+  L    K+   M+ +  QL+ +    P  I +  +I    +   + +A++
Sbjct: 158 DVVTYNTILRTLCDSGKLKQAMEVLDRQLQKEC--YPDVITYTILIEATCKESGVGQAMK 215

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV 163
           + DEM +   +  V  +N L+N     G+LD   +    M  Y   P+  ++NI++    
Sbjct: 216 LLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMC 275

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            + R  DA K+  +M+++   P++VTF  LI  LC +  +  A+ + E  M ++   P+ 
Sbjct: 276 STGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEK-MPMHGCTPNS 334

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             +  L+ G C   ++  A+   + MV      D   Y++L++AL K G+ +    IL +
Sbjct: 335 LSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 394

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  +GC P  +TYN +I G  K    E A  +LDEM  KG K + I+Y+ ++ GL ++GK
Sbjct: 395 LSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGK 454



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 151/300 (50%), Gaps = 7/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERAL 103
           +++ Y+++I  + +    DE  + L+ +   +      +I  N+I        R ++ A 
Sbjct: 228 DVVTYNVLINGICKEGRLDEAIKFLNNMP--SYGCQPNVITHNIILRSMCSTGRWMD-AE 284

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
           ++  +M       +V  FN L+N     G L R  ++ + M  +  +P++ SYN L+HG 
Sbjct: 285 KLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGF 344

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
              ++++ A +  D MV R   P +VT+ TL+  LC + +VD A+++    +      P 
Sbjct: 345 CKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ-LSSKGCSPV 403

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + ++I GL  VG+   A+ + +EM R  ++ D   YSSL+S L + G+ +E      
Sbjct: 404 LITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFH 463

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +++  G +PN++TYN+++ G CK    + A   L  M  K CK    +Y +++ G+  +G
Sbjct: 464 DLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEG 523



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 108/212 (50%), Gaps = 10/212 (4%)

Query: 137 MKELFQIMEKYVS----PDACSYNILIHG-CVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           +++ F+ +E  V     PD      LI G C + +  +  W V + + +    P ++T+ 
Sbjct: 73  LEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATW-VMEILEQSGAVPDVITYN 131

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
            LI G C    +D AL+    ++   NV PD   + ++++ LC  G+L  A+ V +  ++
Sbjct: 132 VLISGYCKSGEIDNALQ----VLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQ 187

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
            +   D   Y+ LI A  K     +   +L EM+ +G KP+ VTYN LI+G CKE   + 
Sbjct: 188 KECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDE 247

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           A   L+ M   GC+ N I++N+IL  +C  G+
Sbjct: 248 AIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 279



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 140/292 (47%), Gaps = 6/292 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           N+  ++  +P   N++ +++I+  +     + + +++L  +       P  + F  +I F
Sbjct: 253 NNMPSYGCQP---NVITHNIILRSMCSTGRWMDAEKLLSDMLRKG-CSPSVVTFNILINF 308

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPD 151
             R  LL RA+ + ++M           +N LL+      K+DR  E   IM  +   PD
Sbjct: 309 LCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPD 368

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +YN L+       +++ A ++ +++  +   P L+T+ T+I GL    + + A+KL +
Sbjct: 369 IVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLD 428

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           + MR   +KPD   ++SL+ GL   G++  A+    ++    I  +A  Y+S++  L K+
Sbjct: 429 E-MRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKS 487

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
            + +     L  M  + CKP   TY  LI G   E   + A  +L+E+  +G
Sbjct: 488 RQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRG 539



 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 39/76 (51%)

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L + G   +    L+ M  RG  P+ +   +LI GFC+    + A  +++ +   G   +
Sbjct: 67  LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 126

Query: 328 PISYNVILGGLCKDGK 343
            I+YNV++ G CK G+
Sbjct: 127 VITYNVLISGYCKSGE 142


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 156/298 (52%), Gaps = 8/298 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I  L ++   D+  ++L ++  D    P    +  V+  + +A  +E AL + ++M
Sbjct: 47  YNTMINGLSKSDRLDDAIRLLEEMV-DNGFAPNVFSYNTVLHGFCKANRVENALWLLEQM 105

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHGCVVS 165
                   V  + T++N      KLD++ E  ++M+K +     P+  +Y  L+ G    
Sbjct: 106 VMRGCPPDVVSYTTVINGLC---KLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRV 162

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             L+ A ++  +M +R  +P  +T+  +++GLC   ++D AL+L +++    +  PD   
Sbjct: 163 GDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFT 222

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           +++++  L   G++  A  + E MV      +   YSSL+  L KAG+ +E  A+L+ M 
Sbjct: 223 YSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMT 282

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             GC PN VTYN +I G CK    + A+ +L+EM D GC+ N ++Y V+L   CK GK
Sbjct: 283 RSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGK 340



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 159/300 (53%), Gaps = 4/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I  L +    DE  +++ ++       P  I +  ++  + R   L+ A+++
Sbjct: 113 DVVSYTTVINGLCKLDQVDEACRVMDKMIQ-RGCQPNVITYGTLVDGFCRVGDLDGAVEL 171

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PDACSYNILIHGCV 163
             +M+    +     +N +++   +  KLD   +LF+ ME+  S  PD  +Y+ ++   V
Sbjct: 172 VRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLV 231

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            S +++DA ++ + MV +   P +VT+ +L++GLC   ++DEA  L + + R     P+ 
Sbjct: 232 KSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTR-SGCSPNI 290

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + ++I G C +G +  A  + EEMV    + +   Y+ L+ A  K G+  +   +++ 
Sbjct: 291 VTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEV 350

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M E+G  PN  TYN+L+  FCK+++ E A  +L  M  KGC  N +SYN ++ GLCK  K
Sbjct: 351 MVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATK 410



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 145/297 (48%), Gaps = 4/297 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  ++    R    D   +++ ++  +    P  I + N++      R L+ ALQ+
Sbjct: 148 NVITYGTLVDGFCRVGDLDGAVELVRKMT-ERGYRPNAITYNNIMHGLCSGRKLDSALQL 206

Query: 106 FDEMS-SFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
           F EM  S +    V  ++T+++  +  GK+D    L + M  K  SP+  +Y+ L+HG  
Sbjct: 207 FKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLC 266

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            + +L++A  +   M +    P +VT+ T+I G C   R+DEA  L E+++     +P+ 
Sbjct: 267 KAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVD-GGCQPNV 325

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             +  L+   C  G+   A+G+ E MV      +   Y+SL+    K         +L  
Sbjct: 326 VTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSS 385

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           M ++GC PN V+YN +I+G CK         +L++M    C  + +++N I+  +CK
Sbjct: 386 MIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCK 442



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 112/204 (54%), Gaps = 2/204 (0%)

Query: 141 FQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
           F+ M K   PD+ +YN +I+G   S RL+DA ++ +EMV     P + ++ T+++G C  
Sbjct: 33  FREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKA 92

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            RV+ AL L E  M +    PD   + ++I GLC + ++  A  V ++M++   + +   
Sbjct: 93  NRVENALWLLEQ-MVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVIT 151

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
           Y +L+    + G  +    ++++M ERG +PN++TYN ++ G C     ++A  +  EM 
Sbjct: 152 YGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEME 211

Query: 321 DKG-CKANPISYNVILGGLCKDGK 343
           + G C  +  +Y+ I+  L K GK
Sbjct: 212 ESGSCPPDVFTYSTIVDSLVKSGK 235



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 141/295 (47%), Gaps = 4/295 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ +I  L +A    E   +L Q+  +   VP  + F  +I    +   ++ A ++
Sbjct: 394 NVVSYNTVIAGLCKATKVHEGVLLLEQMLSN-NCVPDIVTFNTIIDAMCKTYRVDIAYEL 452

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY--VSPDACSYNILIHGCV 163
           F+ +        +  +N+L++      + D+ + L + M +    SPD  +YN +I G  
Sbjct: 453 FNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLC 512

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            S+R++ A+K+F +M+   L P  VT+  +I  LC    +DEA  + E +M      P  
Sbjct: 513 KSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLE-LMLKNGFDPGA 571

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +LI G C  G L  AL + + ++      D   +S  I  L K GR  +   +L+ 
Sbjct: 572 ITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLET 631

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           M   G  P++VTYN L+ GFC     E A  + + M   GC+ +  +Y  ++G L
Sbjct: 632 MLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVGHL 686



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 141/301 (46%), Gaps = 4/301 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K +  NL  Y+ ++    +    +   Q+L  +      VP  + +  VI    +A  + 
Sbjct: 354 KGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKG-CVPNVVSYNTVIAGLCKATKVH 412

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILI 159
             + + ++M S N    +  FNT+++      ++D   ELF  I E   +P+  +YN L+
Sbjct: 413 EGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLV 472

Query: 160 HGCVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           HG   SRR + A  +  EM +++   P ++T+ T+I GLC   RVD A KL   ++    
Sbjct: 473 HGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLS-DG 531

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   ++ +I  LC    +  A  V E M+++  +  A  Y +LI    K G  ++  
Sbjct: 532 LAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKAL 591

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            IL+ +  +G  P+ VT++  I    K      A  +L+ M   G   + ++YN +L G 
Sbjct: 592 EILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGF 651

Query: 339 C 339
           C
Sbjct: 652 C 652



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 130/265 (49%), Gaps = 1/265 (0%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           VP    + +++  + +   +ERA Q+   M        V  +NT++       K+     
Sbjct: 357 VPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVL 416

Query: 140 LF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L  Q++     PD  ++N +I     + R++ A+++F+ + +    P LVT+ +L++GLC
Sbjct: 417 LLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLC 476

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              R D+A  L  ++ R     PD   + ++I GLC    +  A  +  +M+ D +  D 
Sbjct: 477 KSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDD 536

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             YS +IS+L K    +E   +L+ M + G  P ++TY  LI GFCK  + + A  IL  
Sbjct: 537 VTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQL 596

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           +  KG   + +++++ +  L K G+
Sbjct: 597 LLSKGSYPDVVTFSIFIDWLSKRGR 621



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 137/285 (48%), Gaps = 5/285 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ ++ II  + +    D   + L  L  ++   P  + + +++    ++R  ++A  +
Sbjct: 429 DIVTFNTIIDAMCKTYRVDIAYE-LFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYL 487

Query: 106 FDEMS-SFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCV 163
             EM+        +  +NT+++      ++DR  +LF Q++   ++PD  +Y+I+I    
Sbjct: 488 LREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLC 547

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
             R +++A  V + M+K    P  +T+GTLI G C    +D+AL++ + ++      PD 
Sbjct: 548 KWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQ-LLLSKGSYPDV 606

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             F+  I  L   G L  A  + E M+R  +  D   Y++L+     A R  +   + + 
Sbjct: 607 VTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEV 666

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFT-ILDEMGDKGCKAN 327
           M++ GC+P++ TY  L+     ++ ++     +   M D G K N
Sbjct: 667 MRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLN 711



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 85/165 (51%), Gaps = 2/165 (1%)

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M ++ L+       +++ GLC   +  +A+    ++ +     PD   + ++I GL    
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKT--CPPDSVTYNTMINGLSKSD 58

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
            L  A+ + EEMV +    +   Y++++    KA R      +L++M  RGC P+ V+Y 
Sbjct: 59  RLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYT 118

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            +I+G CK +  + A  ++D+M  +GC+ N I+Y  ++ G C+ G
Sbjct: 119 TVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVG 163


>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Glycine max]
          Length = 479

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 166/334 (49%), Gaps = 11/334 (3%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L + +KD   A+ +F       +   A     FR++   + LII++L     F   + +L
Sbjct: 21  LIKAEKDVHKAVNMF-------DSATAEYGNGFRHDHETFGLIISRLVTVNQFRPAEGML 73

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130
            ++K +  +V ++I F ++   YGR      A+++F +M  F ++ T K + T+L+  + 
Sbjct: 74  ERMKQEKCMVTEDI-FLSICRGYGRVHRPLDAIRVFHKMEGFQLRPTQKAYLTILDILVE 132

Query: 131 CGKLDRMKELFQIMEKYVSPDAC-SYNILIHG-CVVSRRLEDAWKVFDEMVKRRLQPTLV 188
              + R    ++ M +   P +  S NILI   C     ++ A ++F EM  R  QP   
Sbjct: 133 ENHVKRAIGFYREMRELGIPSSVVSLNILIKALCKNKETVDSALRIFQEMPNRGCQPDSY 192

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           T+GTLI GLC    + EA +L ++ M           + SLI GLC    L  A+G+ EE
Sbjct: 193 TYGTLINGLCRLGNISEAKELFKE-MEQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEE 251

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M R+ IE +   YSSL+  L K G  ++   +L+ M ++   PN VTY+ LI+G CKE  
Sbjct: 252 MKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERK 311

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
              A  ILD M  +G K N   Y  I+ GLC  G
Sbjct: 312 LREAVEILDRMRIQGLKPNAGLYGKIISGLCAAG 345



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 137/304 (45%), Gaps = 46/304 (15%)

Query: 80  VPKEIIFCNVI--GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           +P  ++  N++          ++ AL++F EM +   Q     + TL+N     G +   
Sbjct: 151 IPSSVVSLNILIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEA 210

Query: 138 KELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           KELF+ ME K  S    +Y  LIHG   S  L++A  + +EM +  ++P + T+ +L+ G
Sbjct: 211 KELFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDG 270

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC      +A++L E + + +++ P+   +++LI GLC   +L  A+ + + M    ++ 
Sbjct: 271 LCKGGHSSQAMQLLEVMDKKHHL-PNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKP 329

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY-------NALISG------- 302
           +AG+Y  +IS L  AG   E    + EM   G  PN  ++       N ++ G       
Sbjct: 330 NAGLYGKIISGLCAAGSYQEAANFIDEMVLGGISPNRASWSLHVRMHNMVVQGLCNNVDP 389

Query: 303 ----------------------------FCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
                                       FCK  D   A  IL+EM   GC  +   +NV+
Sbjct: 390 PRAFQLYLSMRTRCISVEIDTFDCLVKCFCKRGDLHKAARILEEMVLDGCIPDEGVWNVV 449

Query: 335 LGGL 338
           +GGL
Sbjct: 450 IGGL 453



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 112/262 (42%), Gaps = 43/262 (16%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L R     E +++  +++         + + ++I    ++  L+ A+ + +EM
Sbjct: 194 YGTLINGLCRLGNISEAKELFKEMEQKG-FSASVVTYTSLIHGLCQSNNLDEAIGLLEEM 252

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVVSRRL 168
              +++  V  +++L++     G   +  +L ++M+K +  P+  +Y+ LI+G    R+L
Sbjct: 253 KRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKL 312

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM-------------- 214
            +A ++ D M  + L+P    +G +I GLC      EA    ++++              
Sbjct: 313 REAVEILDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLGGISPNRASWSLH 372

Query: 215 -RVYNVKPDG--------------------------QVFASLIKGLCAVGELSLALGVKE 247
            R++N+   G                            F  L+K  C  G+L  A  + E
Sbjct: 373 VRMHNMVVQGLCNNVDPPRAFQLYLSMRTRCISVEIDTFDCLVKCFCKRGDLHKAARILE 432

Query: 248 EMVRDKIEMDAGIYSSLISALF 269
           EMV D    D G+++ +I  L+
Sbjct: 433 EMVLDGCIPDEGVWNVVIGGLW 454


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 163/300 (54%), Gaps = 7/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNV-IGFYGRARLLERALQ 104
           N    ++++    +   F E+  ++ ++  + R V  +++  NV +    RA  +E A+ 
Sbjct: 158 NTYTLNIMVHSYCKTLQFGEVDTVISEM--EKRCVFPDVVTHNVMVDARFRAGDVEAAMA 215

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHGCV 163
           + D M S  ++  +  +N++L   L  G+ D+ +E+F+ M+   V+PD  S+N+LI G  
Sbjct: 216 LIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFC 275

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDIMRVYNVKPD 222
            +  LE+A + + EM  RR+ P +V+F  LI        +D A + L+E  MR + + PD
Sbjct: 276 RAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLRE--MREFGLMPD 333

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
           G ++  +I G C  G +  AL V++EMV      D   Y++L++ L K  R ++   +L 
Sbjct: 334 GVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLN 393

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           EMKERG  P+  T+  LI G+C++ + E A    D + D+  + + ++YN ++ G+C+ G
Sbjct: 394 EMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQG 453



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 155/299 (51%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ +  +I    R    D   + L +++ +  ++P  +I+  VIG + RA L+  AL++
Sbjct: 298 DVVSFSCLIGLFTRRGEMDHAAEYLREMR-EFGLMPDGVIYTMVIGGFCRAGLMLEALRV 356

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            DEM +F     V  +NTLLN      +L   +EL   M E+ V PD C++  LIHG   
Sbjct: 357 RDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCR 416

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +E A + FD +  +RL+P +VT+ TLI G+C +  + +A +L +D M    + P+  
Sbjct: 417 DGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDD-MHSREIFPNHV 475

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++ LI   C  G++  A    +EMV   I  +   Y+S+I    ++G  ++    L +M
Sbjct: 476 TYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKM 535

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +     P+ +TYN LI G+ KE     AF +L  M ++  + + ++YN+I+ G    G 
Sbjct: 536 RHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGN 594



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 151/304 (49%), Gaps = 3/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  +  L+ Y+ ++  L R   +D+ +++   +     + P    F  +IG + RA  LE
Sbjct: 223 KGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDA-CGVAPDVRSFNMLIGGFCRAGELE 281

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
            AL+ + EM    V   V  F+ L+      G++D   E  + M ++ + PD   Y ++I
Sbjct: 282 EALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVI 341

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G   +  + +A +V DEMV     P +VT+ TL+ GLC E R+ +A +L  + M+   V
Sbjct: 342 GGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNE-MKERGV 400

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   F +LI G C  G +  AL   + +   ++  D   Y++LI  + + G   +   
Sbjct: 401 PPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANE 460

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +  +M  R   PN VTY+ LI   C++   + AF  LDEM +KG   N ++YN I+ G C
Sbjct: 461 LWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYC 520

Query: 340 KDGK 343
           + G 
Sbjct: 521 RSGN 524



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 150/298 (50%), Gaps = 9/298 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++++I    RA   +E  +   +++   R+ P  + F  +IG + R   ++ A +   EM
Sbjct: 267 FNMLIGGFCRAGELEEALRFYKEMR-GRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREM 325

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHGCVVS 165
             F +      +  ++      G    M E  ++ ++ V+    PD  +YN L++G    
Sbjct: 326 REFGLMPDGVIYTMVIGGFCRAGL---MLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKE 382

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
           RRL DA ++ +EM +R + P L TF TLI+G C +  +++AL+   D +    ++PD   
Sbjct: 383 RRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFF-DTISDQRLRPDIVT 441

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + +LI G+C  G+L  A  + ++M   +I  +   YS LI +  + G+ +   A L EM 
Sbjct: 442 YNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMV 501

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +G  PN +TYN++I G+C+  +       L +M       + I+YN ++ G  K+GK
Sbjct: 502 NKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGK 559



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 145/280 (51%), Gaps = 5/280 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI-IFCNVIGFYGRARLLERALQ 104
           +++ Y+ ++  L + +   + +++L+++K   R VP ++  F  +I  Y R   +E+ALQ
Sbjct: 368 DVVTYNTLLNGLCKERRLSDAEELLNEMKE--RGVPPDLCTFTTLIHGYCRDGNIEKALQ 425

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
            FD +S   ++  +  +NTL++     G L +  EL+  M  + + P+  +Y+ILI    
Sbjct: 426 FFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHC 485

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              ++++A+   DEMV + + P ++T+ ++I G C    V +  +     MR   V PD 
Sbjct: 486 EKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPK-MRHDKVMPDL 544

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +LI G    G++  A  + + M  + ++ DA  Y+ +IS     G   E   + K+
Sbjct: 545 ITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKK 604

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           M  RG +P+  TY ++I+G     + + +F + DEM  KG
Sbjct: 605 MGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKG 644



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 55/115 (47%)

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           ++   C   +      V  EM +  +  D   ++ ++ A F+AG      A++  M  +G
Sbjct: 165 MVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSMVSKG 224

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            KP  VTYN+++ G  +   ++ A  +   M   G   +  S+N+++GG C+ G+
Sbjct: 225 IKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGE 279



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           E++    + ++ +  K  +  E   ++ EM++R   P+ VT+N ++    +  D EAA  
Sbjct: 156 EVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMA 215

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           ++D M  KG K   ++YN +L GL ++G+
Sbjct: 216 LIDSMVSKGIKPGLVTYNSVLKGLLRNGR 244


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 159/299 (53%), Gaps = 2/299 (0%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y  +I+   +    DE  ++  ++     + P+ +++  +IG Y     L+ AL  
Sbjct: 220 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 279

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            D M    V MTV  +N L++     G+     EL + M  K ++ D  +YNILI+G   
Sbjct: 280 RDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCK 339

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              ++ A ++F+ M +R ++ T+VT+ +LIY L  + +V E  KL ++ +R   ++PD  
Sbjct: 340 EGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVR-RGIRPDLV 398

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++ +LI      G +  A  +  EM + +I  D   Y++L+  L   GR +E   ++ EM
Sbjct: 399 LYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM 458

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +RG +P+ VTYN LISG+  + D + A  I +EM +KG     ++YN ++ GLCK+G+
Sbjct: 459 TKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQ 517



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 129/244 (52%), Gaps = 4/244 (1%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161
           A  +F +M    + +    FN +L    + GK  R  EL + M +   P+A +YN +I G
Sbjct: 138 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR---PNAVTYNTVIAG 194

Query: 162 CVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                R++ A  +  EM +R  + P   T+GT+I G C   RVDEA+K+ ++++    VK
Sbjct: 195 FCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK 254

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+  ++ +LI G C  G+L  AL  ++ MV   + M    Y+ L+ ALF  GR  E   +
Sbjct: 255 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 314

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           ++EM  +G   +  TYN LI+G CKE + + A  I + M  +G +A  ++Y  ++  L K
Sbjct: 315 VEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSK 374

Query: 341 DGKC 344
            G+ 
Sbjct: 375 KGQV 378



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 119/211 (56%), Gaps = 2/211 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           +++AL++F+ MS   V+ TV  + +L+      G++    +LF + + + + PD   YN 
Sbjct: 343 VKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNA 402

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+    S  ++ A+++  EM K+R+ P  VT+ TL+ GLCL  RVDEA KL +++ +  
Sbjct: 403 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTK-R 461

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            ++PD   + +LI G    G++  AL ++ EM+          Y++LI  L K G+ ++ 
Sbjct: 462 GIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDA 521

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEED 308
             ++KEM E G  P+  TY +LI G   E++
Sbjct: 522 ENMVKEMVENGITPDDSTYISLIEGLTTEDE 552



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 35/193 (18%)

Query: 84  IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQI 143
           + + ++I    +   ++   ++FDE     ++  +  +N L+N   T G +DR  E+   
Sbjct: 363 VTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 422

Query: 144 MEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR 202
           MEK  ++PD  +YN L+ G  +  R+++A K+ DEM KR +QP LVT+ TLI G  ++  
Sbjct: 423 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGD 482

Query: 203 VDEALKLKEDIMR--------VYN--------------------------VKPDGQVFAS 228
           V +AL+++ ++M          YN                          + PD   + S
Sbjct: 483 VKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYIS 542

Query: 229 LIKGLCAVGELSL 241
           LI+GL    E ++
Sbjct: 543 LIEGLTTEDERAI 555


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 159/300 (53%), Gaps = 6/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y+++I  L +   FDE  +I H++K + R          + G  G   L + A ++
Sbjct: 229 NIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNL-DGATRV 287

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
           + EM+   V   V  +NT+LN  L  G+++   EL+++MEK       SYNILI G   +
Sbjct: 288 YKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFEN 347

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            ++++A  +++ + ++      +T+G L++GLC    +++AL + E+     N + D   
Sbjct: 348 AKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEE---AENGRGDLDT 404

Query: 226 FA--SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
           FA  S+I GLC  G L    GV ++M +   + +  + +++I+   +A +  +       
Sbjct: 405 FAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGN 464

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M  +GC P  VTYN LI+G  K E F  A+ ++ EM  KG K N I+Y++++ GLC+  K
Sbjct: 465 MVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKK 524



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 159/366 (43%), Gaps = 73/366 (19%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL  Y+++I    R K FD+ +++L+ +       P    +  +I    +   +  AL++
Sbjct: 123 NLQTYNILIKISCRKKQFDKAKELLNWM-WGQGFSPDVFSYGTLINSLAKNGYMSDALKL 181

Query: 106 FDEM---------SSFNVQM---------------------------TVKFFNTLLNPKL 129
           FDEM         + +N+ +                            +  +N ++N   
Sbjct: 182 FDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLC 241

Query: 130 TCGKLDRMKELFQIMEKYV-SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
            CGK D   E++  M+K     D  +Y+ LIHG   S  L+ A +V+ EM +  + P +V
Sbjct: 242 KCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVV 301

Query: 189 TFGTLIYGL--------CLEL--------------------------RVDEALKLKEDIM 214
            + T++ G         CLEL                          +VDEA+ + E ++
Sbjct: 302 VYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWE-LL 360

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
              +   D   +  L+ GLC  G L+ AL + EE    + ++D   YSS+I+ L + GR 
Sbjct: 361 PEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRL 420

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +E   +L +M + GCKPN    NA+I+GF +    E A      M  KGC    ++YN +
Sbjct: 421 DEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTL 480

Query: 335 LGGLCK 340
           + GL K
Sbjct: 481 INGLSK 486



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 130/243 (53%), Gaps = 2/243 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           L +AL + +E  +    +    +++++N     G+LD +  +   M K+   P+    N 
Sbjct: 385 LNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNA 444

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I+G V + +LEDA + F  MV +   PT+VT+ TLI GL    R  EA  L +++++  
Sbjct: 445 VINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQ-K 503

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             KP+   ++ L+ GLC   +L +AL +  + +    + D  +++ +I  L  +G+  + 
Sbjct: 504 GWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDA 563

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +  EMK+R C PN VT+N L+ GF K  DFE A  I D +   G + + ISYN+ L G
Sbjct: 564 LQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKG 623

Query: 338 LCK 340
           LC 
Sbjct: 624 LCS 626



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 126/290 (43%), Gaps = 40/290 (13%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCN-VIGFYGRARLLERALQMFD 107
           Y  +I  L R    DE+  +L Q+ KH  +  P     CN VI  + RA  LE AL+ F 
Sbjct: 407 YSSMINGLCREGRLDEVAGVLDQMTKHGCKPNP---YVCNAVINGFVRASKLEDALRFFG 463

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRR 167
            M S                                  K   P   +YN LI+G   + R
Sbjct: 464 NMVS----------------------------------KGCFPTVVTYNTLINGLSKAER 489

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
             +A+ +  EM+++  +P ++T+  L+ GLC   ++D AL L    +     KPD ++  
Sbjct: 490 FSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALE-KGFKPDVKMHN 548

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            +I GLC+ G++  AL +  EM +     +   +++L+   +K         I   + + 
Sbjct: 549 IIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQY 608

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           G +P+ ++YN  + G C       A   L++  D+G     I++N+++ G
Sbjct: 609 GLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVQG 658



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 118/277 (42%), Gaps = 15/277 (5%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSF-NVQMTVKFFNTLL----NPKLTCGKL 134
            PK +    VI      +    AL +FD ++ F     T   F+ +L    +PKL     
Sbjct: 4   APKSLSPKRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHAY 63

Query: 135 ------DRMKELFQIMEKYVS--PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
                 D+  ++FQ M +     P   SYN L++  + S + ++A   F       L P 
Sbjct: 64  AKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPN 123

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
           L T+  LI   C + + D+A +L  + M      PD   + +LI  L   G +S AL + 
Sbjct: 124 LQTYNILIKISCRKKQFDKAKELL-NWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLF 182

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM-KERGCKPNSVTYNALISGFCK 305
           +EM    +  D   Y+ LI   FK G       I + + K     PN  +YN +I+G CK
Sbjct: 183 DEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCK 242

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
              F+ +F I   M       +  +Y+ ++ GLC  G
Sbjct: 243 CGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSG 279


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 175/340 (51%), Gaps = 17/340 (5%)

Query: 6   IRLACLPRLQKDPKLALQLFKNP-----NPNPNDTEAHPLKPFRYNL---LHYDLIITKL 57
           + LA LP     PKLALQL K         N    +   L   R ++   + +DL++   
Sbjct: 134 VLLARLP----SPKLALQLLKQVMGTRIATNRELFDELTLSRDRLSVKSSIVFDLLVRVC 189

Query: 58  GRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQMFDEMSSFNVQM 116
              +  DE  +  + +K +  IVPK I  CN ++  + +   +E A  ++ EM    +  
Sbjct: 190 CELRRADEAFKCFYMMK-EKGIVPK-IETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISS 247

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           TV  FN ++N     GKL + +E    ME     P+  SYN +IHG      +E A ++ 
Sbjct: 248 TVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRIL 307

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           D M  + ++P   T+G+LI G+C E R++EA  L + ++ +  + P+   + +LI G C 
Sbjct: 308 DAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEI-GLVPNAVTYNTLIDGYCN 366

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G+L  A   ++EMV+  I      Y+ L+ ALF  GR  E   ++KEM+++G  P+++T
Sbjct: 367 KGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAIT 426

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           YN LI+G+ +  + + AF + +EM  KG +   ++Y  ++
Sbjct: 427 YNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLI 466



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 150/283 (53%), Gaps = 10/283 (3%)

Query: 60  AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK 119
           + +FD+M +I         +VP  + +  +I  Y     LERA    DEM    +  +V 
Sbjct: 339 SGLFDKMVEI--------GLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVS 390

Query: 120 FFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
            +N L++     G++    ++ + M +K + PDA +YNILI+G       + A+ + +EM
Sbjct: 391 TYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEM 450

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
           + + ++PT VT+ +LIY L    R+ EA  L E I+    V PD  +F +++ G CA G 
Sbjct: 451 LSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILD-QGVSPDVIMFNAMVDGHCANGN 509

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           +  A  + +EM R  +  D   +++L+    + G+  E   +L EMK RG KP+ ++YN 
Sbjct: 510 VERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNT 569

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           LISG+ +  D + AF + DEM   G     ++YN ++  LCK+
Sbjct: 570 LISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKN 612



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 134/264 (50%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  +I  Y     +E A ++ D M    ++     + +L++     G+L+    L
Sbjct: 282 PNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGL 341

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++E  + P+A +YN LI G      LE A+   DEMVK+ + P++ T+  L++ L +
Sbjct: 342 FDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFM 401

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E R+ EA  + ++ MR   + PD   +  LI G    G    A  +  EM+   IE    
Sbjct: 402 EGRMGEADDMIKE-MRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHV 460

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+SLI  L +  R  E   + +++ ++G  P+ + +NA++ G C   + E AF +L EM
Sbjct: 461 TYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEM 520

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             K    + +++N ++ G C++GK
Sbjct: 521 DRKSVPPDEVTFNTLMQGRCREGK 544



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 128/247 (51%), Gaps = 11/247 (4%)

Query: 104 QMFDEMSSFNVQMTVK---FFNTLLNPKLTCGKLDRMKELFQ----IMEKYVSPDACSYN 156
           ++FDE++    +++VK    F+ L+     C +L R  E F+    + EK + P   + N
Sbjct: 162 ELFDELTLSRDRLSVKSSIVFDLLVR---VCCELRRADEAFKCFYMMKEKGIVPKIETCN 218

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            ++   +   R+E AW ++ EM + R+  T+ TF  ++  LC E ++ +A +     M  
Sbjct: 219 DMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFI-GFMEG 277

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
              KP+   + ++I G  + G +  A  + + M    IE D+  Y SLIS + K GR  E
Sbjct: 278 LGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEE 337

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +  +M E G  PN+VTYN LI G+C + D E AF+  DEM  KG   +  +YN+++ 
Sbjct: 338 ASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVH 397

Query: 337 GLCKDGK 343
            L  +G+
Sbjct: 398 ALFMEGR 404


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 157/292 (53%), Gaps = 2/292 (0%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+++   L  + M  E  ++L QL++D    P ++ F  +I          RA ++ ++ 
Sbjct: 371 YNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDA 430

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVVSRRL 168
            +   ++ V  +++++N     G+     E+++ M K    P++  YN LI+G     ++
Sbjct: 431 RNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKI 490

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            DA K++ EM      PT++T+ TLI GLC   +  EA  L ++++     KPD + +AS
Sbjct: 491 NDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLE-RGFKPDIRTYAS 549

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI+GLC   ++ +AL + +E++   +++D  +++ LI  L  AG+ +E   I  EMKE+ 
Sbjct: 550 LIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKN 609

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           C PN VTYN L+ GF +    + A ++   + D G K + ++YN  + GLC 
Sbjct: 610 CSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCS 661



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 149/369 (40%), Gaps = 72/369 (19%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL  Y++I+  L      D    +   L+    + P  + +  ++    +   L+ AL +
Sbjct: 157 NLQTYNIILRSLCARGDVDRAVSLFSSLRRRG-VAPDRVTYSTLMSGLAKHDQLDNALDL 215

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCG--------------------------------- 132
            DEM ++ VQ     +N LL+     G                                 
Sbjct: 216 LDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLC 275

Query: 133 KLDRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
           KL R KE  ++  + ++     D  +Y ILIHG   S  ++ A +V+ +MVK  L   + 
Sbjct: 276 KLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVS 335

Query: 189 TFGTLIYGLCLELRVDEALKLKEDI-------MRVYNV---------------------- 219
            + +LI G C   R  EA K  +         +  YN+                      
Sbjct: 336 VYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLE 395

Query: 220 -----KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
                 PD   F +LI GLC  G  + A  + E+      E+D   YSS+I+   K GR 
Sbjct: 396 NDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRT 455

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           ++   + K M + GCKPNS  YNALI+GFC+      A  I  EM   GC    I+YN +
Sbjct: 456 HDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTL 515

Query: 335 LGGLCKDGK 343
           + GLCK  K
Sbjct: 516 IDGLCKAEK 524



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 159/368 (43%), Gaps = 55/368 (14%)

Query: 14  LQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIIT---KLGRAKMFDEMQQIL 70
            +K  K+  QL ++P  +PN             L  Y +++    KLGR K   E+   +
Sbjct: 244 FEKAMKVWEQLVRDPGASPN-------------LATYKVMLDGLCKLGRFKEAGEVWSRM 290

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130
               H    V   I+   +     R+  ++ A +++ +M    + + V  +N+L+     
Sbjct: 291 MANNHQADTVTYGILIHGLC----RSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCE 346

Query: 131 CGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK-RRLQPTLVT 189
            G+     + +            +YNI+  G + S  + +A ++  ++       P  VT
Sbjct: 347 VGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVT 406

Query: 190 FGTLIYGLCLELRVDEALKLKEDIM----------------------------RVY---- 217
           FGTLI+GLC     + A ++ ED                               VY    
Sbjct: 407 FGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMV 466

Query: 218 --NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
               KP+  V+ +LI G C V +++ A+ +  EM  +        Y++LI  L KA +  
Sbjct: 467 KDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQ 526

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E  ++ KEM ERG KP+  TY +LI G C+++  + A  I DE+ D G + + + +N+++
Sbjct: 527 EASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILI 586

Query: 336 GGLCKDGK 343
            GLC  GK
Sbjct: 587 HGLCSAGK 594



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 121/262 (46%), Gaps = 8/262 (3%)

Query: 89  VIGFYGRARLLERALQMFDEMSSF-NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-- 145
           V+  + RA + + AL  F ++ S       V+  NTLL+  +   +       F  +   
Sbjct: 89  VLSAFSRALMPDAALAAFRDLPSLLGCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHG 148

Query: 146 ---KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR 202
              + ++P+  +YNI++        ++ A  +F  + +R + P  VT+ TL+ GL    +
Sbjct: 149 AFGRRIAPNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQ 208

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD-KIEMDAGIY 261
           +D AL L ++ M  Y V+ D   + +L+ G    G    A+ V E++VRD     +   Y
Sbjct: 209 LDNALDLLDE-MPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATY 267

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
             ++  L K GR  E   +   M     + ++VTY  LI G C+  D ++A  +  +M  
Sbjct: 268 KVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVK 327

Query: 322 KGCKANPISYNVILGGLCKDGK 343
            G   +   YN ++ G C+ G+
Sbjct: 328 AGLVLDVSVYNSLIKGFCEVGR 349


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 149/274 (54%), Gaps = 3/274 (1%)

Query: 72  QLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131
           QL  + R VP E  + ++I    +A  L++A ++ DEM    +   V   N ++      
Sbjct: 19  QLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKA 78

Query: 132 GKL-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM-VKRRLQPTLVT 189
           G+  D +     +     +PD  ++NIL+   V S R+E+A+++F+ M    +  P +VT
Sbjct: 79  GRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVT 138

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           + T+I GLC + ++D A++L  D+M      P+   ++ L++GLC  G       + +EM
Sbjct: 139 YTTVINGLCKDGKLDRAIELL-DLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEM 197

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
            R   + D  +Y++L++ L K+ R +E   +++ M   GC P  VTYN+L+  FC+ +  
Sbjct: 198 TRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQV 257

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + AF ++  M ++GC  + I+YN ++ GLC+D +
Sbjct: 258 DRAFRLIQVMSERGCPPDVINYNTVIAGLCRDAR 291



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 150/304 (49%), Gaps = 8/304 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y +++  L +A   D+   +L ++       P  I++  ++    ++R L+ AL++
Sbjct: 170 NVITYSVLVEGLCKAGRTDKGFTLLQEMTRRG-FQPDVIMYNTLLNGLCKSRRLDEALEL 228

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
              M       TV  +N+L+       ++DR   L Q+M E+   PD  +YN +I G   
Sbjct: 229 VQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCR 288

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE-----DIMRVYNV 219
             RL+DA  +  +MV  R  P ++T+ T+I GLC + RVD   KL+      ++M+    
Sbjct: 289 DARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGC 348

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   +A +I+GLC   +   AL +   M+  ++  D   +S +I +L K+   +    
Sbjct: 349 PPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYK 408

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           I   M ER CKPN V Y ALI G  K  + + A  + + M +   +    +YN +L GLC
Sbjct: 409 IFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVES-FRPGVATYNSVLDGLC 467

Query: 340 KDGK 343
             G+
Sbjct: 468 GVGR 471



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 153/305 (50%), Gaps = 9/305 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L +    D   ++L  L ++T   P  I +  ++    +A   ++   +
Sbjct: 135 NVVTYTTVINGLCKDGKLDRAIELL-DLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTL 193

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
             EM+    Q  V  +NTLLN      +LD   EL Q+M +    P   +YN L+     
Sbjct: 194 LQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCR 253

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S++++ A+++   M +R   P ++ + T+I GLC + R+D+A  L + ++    V PD  
Sbjct: 254 SKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCV-PDVI 312

Query: 225 VFASLIKGLC------AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
            ++++I GLC      A  +L  A  + E M +     +AG Y+ +I  L +A +  +  
Sbjct: 313 TYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQAL 372

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           A+L+ M +    P+  +++ +I   CK  D +AA+ I   M ++ CK NP++Y  ++ GL
Sbjct: 373 ALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGL 432

Query: 339 CKDGK 343
            K G+
Sbjct: 433 SKGGE 437



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 148/341 (43%), Gaps = 43/341 (12%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + F+ +++ Y+ ++  L +++  DE  +++ QL   +   P  + + +++  + R++ ++
Sbjct: 200 RGFQPDVIMYNTLLNGLCKSRRLDEALELV-QLMIRSGCYPTVVTYNSLMELFCRSKQVD 258

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
           RA ++   MS       V  +NT++       +LD  + L  Q++     PD  +Y+ +I
Sbjct: 259 RAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTII 318

Query: 160 HGCVVSRRLEDAWK------VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL---- 209
            G     R++  WK      + + M +    P   T+  +I GLC   +  +AL L    
Sbjct: 319 DGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRM 378

Query: 210 ---------------------KEDIMRVYNV---------KPDGQVFASLIKGLCAVGEL 239
                                  D+   Y +         KP+   +A+LI GL   GE+
Sbjct: 379 IDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEV 438

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A+ V E MV +        Y+S++  L   GR  E   +++ M  + C P+  +Y AL
Sbjct: 439 DKAVRVFELMV-ESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGAL 497

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           I G C+    E A+ +   +  KG       YNV++  LCK
Sbjct: 498 IRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCK 538



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 133/287 (46%), Gaps = 10/287 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARL-----L 99
           ++++Y+ +I  L R    D+ Q +L Q+    R VP  I +  +I G     R+     L
Sbjct: 275 DVINYNTVIAGLCRDARLDDAQALLKQMVA-ARCVPDVITYSTIIDGLCKDWRVDADWKL 333

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNIL 158
           E A ++ + M           +  ++       K  +   L + +++  V PD  S++++
Sbjct: 334 EAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMV 393

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I     S  L+ A+K+F  M +R  +P  V +  LI GL     VD+A+++ E  + V +
Sbjct: 394 IGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFE--LMVES 451

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
            +P    + S++ GLC VG +  A+ + E M+  +   D   Y +LI  L +     E  
Sbjct: 452 FRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAY 511

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
            + + ++ +G       YN L++  CK++    A  + +++ + G K
Sbjct: 512 ELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGYK 558


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 175/340 (51%), Gaps = 17/340 (5%)

Query: 6   IRLACLPRLQKDPKLALQLFKNP-----NPNPNDTEAHPLKPFRYNL---LHYDLIITKL 57
           + LA LP     PKLALQL K         N    +   L   R ++   + +DL++   
Sbjct: 112 VLLARLP----SPKLALQLLKQVMGTRIATNRELFDELTLSRDRLSVKSSIVFDLLVRVC 167

Query: 58  GRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQMFDEMSSFNVQM 116
              +  DE  +  + +K +  IVPK I  CN ++  + +   +E A  ++ EM    +  
Sbjct: 168 CELRRADEAFKCFYMMK-EKGIVPK-IETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISS 225

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           TV  FN ++N     GKL + +E    ME     P+  SYN +IHG      +E A ++ 
Sbjct: 226 TVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRIL 285

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           D M  + ++P   T+G+LI G+C E R++EA  L + ++ +  + P+   + +LI G C 
Sbjct: 286 DAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEI-GLVPNAVTYNTLIDGYCN 344

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G+L  A   ++EMV+  I      Y+ L+ ALF  GR  E   ++KEM+++G  P+++T
Sbjct: 345 KGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAIT 404

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           YN LI+G+ +  + + AF + +EM  KG +   ++Y  ++
Sbjct: 405 YNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLI 444



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 150/283 (53%), Gaps = 10/283 (3%)

Query: 60  AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK 119
           + +FD+M +I         +VP  + +  +I  Y     LERA    DEM    +  +V 
Sbjct: 317 SGLFDKMVEI--------GLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVS 368

Query: 120 FFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
            +N L++     G++    ++ + M +K + PDA +YNILI+G       + A+ + +EM
Sbjct: 369 TYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEM 428

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
           + + ++PT VT+ +LIY L    R+ EA  L E I+    V PD  +F +++ G CA G 
Sbjct: 429 LSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILD-QGVSPDVIMFNAMVDGHCANGN 487

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           +  A  + +EM R  +  D   +++L+    + G+  E   +L EMK RG KP+ ++YN 
Sbjct: 488 VERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNT 547

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           LISG+ +  D + AF + DEM   G     ++YN ++  LCK+
Sbjct: 548 LISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKN 590



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 134/264 (50%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  +I  Y     +E A ++ D M    ++     + +L++     G+L+    L
Sbjct: 260 PNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGL 319

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++E  + P+A +YN LI G      LE A+   DEMVK+ + P++ T+  L++ L +
Sbjct: 320 FDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFM 379

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E R+ EA  + ++ MR   + PD   +  LI G    G    A  +  EM+   IE    
Sbjct: 380 EGRMGEADDMIKE-MRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHV 438

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+SLI  L +  R  E   + +++ ++G  P+ + +NA++ G C   + E AF +L EM
Sbjct: 439 TYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEM 498

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             K    + +++N ++ G C++GK
Sbjct: 499 DRKSVPPDEVTFNTLMQGRCREGK 522



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 128/247 (51%), Gaps = 11/247 (4%)

Query: 104 QMFDEMSSFNVQMTVK---FFNTLLNPKLTCGKLDRMKELFQ----IMEKYVSPDACSYN 156
           ++FDE++    +++VK    F+ L+     C +L R  E F+    + EK + P   + N
Sbjct: 140 ELFDELTLSRDRLSVKSSIVFDLLVR---VCCELRRADEAFKCFYMMKEKGIVPKIETCN 196

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            ++   +   R+E AW ++ EM + R+  T+ TF  ++  LC E ++ +A +     M  
Sbjct: 197 DMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFI-GFMEG 255

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
              KP+   + ++I G  + G +  A  + + M    IE D+  Y SLIS + K GR  E
Sbjct: 256 LGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEE 315

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +  +M E G  PN+VTYN LI G+C + D E AF+  DEM  KG   +  +YN+++ 
Sbjct: 316 ASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVH 375

Query: 337 GLCKDGK 343
            L  +G+
Sbjct: 376 ALFMEGR 382


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 155/296 (52%), Gaps = 3/296 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ ++  L +AK   +   I   +  +   VP  + +  +I  + +   L RA +++ +M
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQM 508

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
              N    V  +N  LN  +  G++   + +++ M     SPD  +Y+ LIHG  ++R+ 
Sbjct: 509 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKH 568

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A ++F+ M+ R  +P  VT+  L++GLC E + DEA +L   ++      PD   + +
Sbjct: 569 DQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVE-RGCDPDRVTYTT 627

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ G C VG++  A+ V +EMV    + D   Y+ L+   F+AG+  E   + + M  R 
Sbjct: 628 LLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQ 687

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEM-GDKGCKANPISYNVILGGLCKDGK 343
           CKP++V++N +I G  K +  + A  + + M  D GC  + ++YN ++ GLC + +
Sbjct: 688 CKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQR 743



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 145/298 (48%), Gaps = 6/298 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           YD++I  L  +   D+ ++   ++     I P      +VI    +A  ++ AL + + M
Sbjct: 342 YDMLIRLLIESGRIDKAEEACLEIA-GRNIQPSSGTCHSVIQELCKAGRVDSALSLLETM 400

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACS---YNILIHGCVVSR 166
                   +   + L+N      K+   +E  Q M++ +S  + S   YN L++    ++
Sbjct: 401 IKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAK 460

Query: 167 RLEDAWKVFDEMV-KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
           ++  A+ +F  MV +R   P +V++  LI G C    +  A KL + ++ + N  P+   
Sbjct: 461 KVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDL-NCVPNVTT 519

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + + + GL   G ++ A GV EEMV      D   YS+LI     A + ++   + + M 
Sbjct: 520 YNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMI 579

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            RGC+PN+VTYN L+ G CKE   + A  +  +M ++GC  + ++Y  +L G C  GK
Sbjct: 580 SRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGK 637



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 128/267 (47%), Gaps = 5/267 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMS-SFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P   I+  ++  + +   L+ A ++F EM+      +    +   L+     GK+++  E
Sbjct: 267 PDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFE 326

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
             + M++ +S     Y++LI   + S R++ A +   E+  R +QP+  T  ++I  LC 
Sbjct: 327 ACRTMQESLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCK 386

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD--KIEMD 257
             RVD AL L E +++     PD    + LI  LC   ++  A    + M R        
Sbjct: 387 AGRVDSALSLLETMIK-RGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSS 445

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEM-KERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
              Y+SL+++L KA + ++  AI   M  ER   P+ V+Y+ LI GFCK ++   A  + 
Sbjct: 446 CFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLY 505

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
            +M D  C  N  +YN  L GL + G+
Sbjct: 506 KQMIDLNCVPNVTTYNAFLNGLMRKGR 532



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/304 (20%), Positives = 136/304 (44%), Gaps = 3/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + F++++  Y+ ++ KL R +   +  Q+  ++     +VP    +  ++      R  +
Sbjct: 123 RNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQG-VVPNGFTYAVLVQSSCYERNSD 181

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
            A++ F EM     + +   +  +       GK      +F + +EK V+ +      L+
Sbjct: 182 EAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALL 241

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
              V+  +  +A K+F  MVK   +P    +  ++   C    +DEA KL  ++      
Sbjct: 242 VNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKA 301

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
             +   + + + GLC  G++  A      M ++ +     +Y  LI  L ++GR ++   
Sbjct: 302 PLNNVAWTAFLSGLCKSGKIEQAFEACRTM-QESLSSSQPVYDMLIRLLIESGRIDKAEE 360

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
              E+  R  +P+S T +++I   CK    ++A ++L+ M  +G   +  ++++++  LC
Sbjct: 361 ACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELC 420

Query: 340 KDGK 343
           K  K
Sbjct: 421 KADK 424



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 82/149 (55%), Gaps = 1/149 (0%)

Query: 121 FNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           + TLL      GK+++  E+F +++ K   PD  +YN L+ G   + +  +A ++F  MV
Sbjct: 625 YTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMV 684

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
            R+ +P  V+   +I GL    R+D+A+++ E + + +   PD   + SLI GLC    L
Sbjct: 685 SRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRL 744

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           S A+ V +E+ R K+  D   ++ L+ A+
Sbjct: 745 SEAMKVFKEIDRLKLSPDPHAFNVLLEAI 773


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 149/274 (54%), Gaps = 3/274 (1%)

Query: 72  QLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131
           QL  + R VP E  + ++I    +A  L++A ++ DEM    +   V   N ++      
Sbjct: 19  QLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKA 78

Query: 132 GKL-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM-VKRRLQPTLVT 189
           G+  D +     +     +PD  ++NIL+   V S R+E+A+++F+ M    +  P +VT
Sbjct: 79  GRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVT 138

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           + T+I GLC + ++D A++L  D+M      P+   ++ L++GLC  G       + +EM
Sbjct: 139 YTTVINGLCKDGKLDRAIELL-DLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEM 197

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
            R   + D  +Y++L++ L K+ R +E   +++ M   GC P  VTYN+L+  FC+ +  
Sbjct: 198 TRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQV 257

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + AF ++  M ++GC  + I+YN ++ GLC+D +
Sbjct: 258 DRAFRLIQVMSERGCPPDVINYNTVIAGLCRDAR 291



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 150/304 (49%), Gaps = 8/304 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y +++  L +A   D+   +L ++       P  I++  ++    ++R L+ AL++
Sbjct: 170 NVITYSVLVEGLCKAGRTDKGFTLLQEMTRRG-FQPDVIMYNTLLNGLCKSRRLDEALEL 228

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
              M       TV  +N+L+       ++DR   L Q+M E+   PD  +YN +I G   
Sbjct: 229 VQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCR 288

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE-----DIMRVYNV 219
             RL+DA  +  +MV  R  P ++T+ T+I GLC + RVD   KL+      ++M+    
Sbjct: 289 DARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGC 348

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   +A +I+GLC   +   AL +   M+  ++  D   +S +I +L K+   +    
Sbjct: 349 PPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYK 408

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           I   M ER CKPN V Y ALI G  K  + + A  + + M +   +    +YN +L GLC
Sbjct: 409 IFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVES-FRPGVATYNSVLDGLC 467

Query: 340 KDGK 343
             G+
Sbjct: 468 GVGR 471



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 153/305 (50%), Gaps = 9/305 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L +    D   ++L  L ++T   P  I +  ++    +A   ++   +
Sbjct: 135 NVVTYTTVINGLCKDGKLDRAIELL-DLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTL 193

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
             EM+    Q  V  +NTLLN      +LD   EL Q+M +    P   +YN L+     
Sbjct: 194 LQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCR 253

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S++++ A+++   M +R   P ++ + T+I GLC + R+D+A  L + ++    V PD  
Sbjct: 254 SKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCV-PDVI 312

Query: 225 VFASLIKGLC------AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
            ++++I GLC      A  +L  A  + E M +     +AG Y+ +I  L +A +  +  
Sbjct: 313 TYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQAL 372

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           A+L+ M +    P+  +++ +I   CK  D +AA+ I   M ++ CK NP++Y  ++ GL
Sbjct: 373 ALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGL 432

Query: 339 CKDGK 343
            K G+
Sbjct: 433 SKGGE 437



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 148/341 (43%), Gaps = 43/341 (12%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + F+ +++ Y+ ++  L +++  DE  +++ QL   +   P  + + +++  + R++ ++
Sbjct: 200 RGFQPDVIMYNTLLNGLCKSRRLDEALELV-QLMIRSGCYPTVVTYNSLMELFCRSKQVD 258

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
           RA ++   MS       V  +NT++       +LD  + L  Q++     PD  +Y+ +I
Sbjct: 259 RAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTII 318

Query: 160 HGCVVSRRLEDAWK------VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL---- 209
            G     R++  WK      + + M +    P   T+  +I GLC   +  +AL L    
Sbjct: 319 DGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRM 378

Query: 210 ---------------------KEDIMRVYNV---------KPDGQVFASLIKGLCAVGEL 239
                                  D+   Y +         KP+   +A+LI GL   GE+
Sbjct: 379 IDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEV 438

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A+ V E MV +        Y+S++  L   GR  E   +++ M  + C P+  +Y AL
Sbjct: 439 DKAVRVFELMV-ESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGAL 497

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           I G C+    E A+ +   +  KG       YNV++  LCK
Sbjct: 498 IRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCK 538



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 132/287 (45%), Gaps = 10/287 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARL-----L 99
           ++++Y+ +I  L R    D+ Q +L Q+    R VP  I +  +I G     R+     L
Sbjct: 275 DVINYNTVIAGLCRDARLDDAQALLKQMVA-ARCVPDVITYSTIIDGLCKDWRVDADWKL 333

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           E A ++ + M           +  ++       K  +   L + M +  V PD  S++++
Sbjct: 334 EAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMV 393

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I     S  L+ A+K+F  M +R  +P  V +  LI GL     VD+A+++ E  + V +
Sbjct: 394 IGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFE--LMVES 451

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
            +P    + S++ GLC VG +  A+ + E M+  +   D   Y +LI  L +     E  
Sbjct: 452 FRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAY 511

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
            + + ++ +G       YN L++  CK++    A  + +++ + G K
Sbjct: 512 ELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGYK 558


>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
          Length = 486

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 170/331 (51%), Gaps = 14/331 (4%)

Query: 15  QKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 74
           Q D  LA+++F+  +  P          F+++   Y  +I KLGRA+ F  M+ ++ Q++
Sbjct: 110 QTDALLAMEIFEVASRQPG---------FKHSYSTYHTLICKLGRARQFKTMEGLIQQMR 160

Query: 75  HD-TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133
            D     P   +F ++I  YG   +   A++ F +M  F  +   K FN LL   +    
Sbjct: 161 KDGCPYTPG--LFVDIIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKC 218

Query: 134 LDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           L+    LF+ + ++ +SP+  +YNILI     S +L  A+ +F++M K+   P + T+  
Sbjct: 219 LETALSLFKKLHEFGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSI 278

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           L+ GLC + +V  AL + ++++    V PD   + +L+  LC    L  A  +  +M   
Sbjct: 279 LMQGLCRKSQVKTALGVLDEMLNKGYV-PDALTYNTLLNSLCRKMNLREAYRLLSKMKVM 337

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
               D   Y+++I+   + GR  +   IL++M E GC PN+++Y  L++G C E  F+ A
Sbjct: 338 GCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEA 397

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              ++EM   G   +   Y++++ GLC +GK
Sbjct: 398 KDFVEEMISNGFIPHISIYHLLITGLCNEGK 428


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 96/275 (34%), Positives = 142/275 (51%), Gaps = 37/275 (13%)

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV 163
           +FDE+    +Q T   FNTL+N     G L+    L  +ME++ V PD  +Y+ LI G  
Sbjct: 254 IFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLC 313

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK---------LKEDIM 214
              +LEDA  +F EM  R L P  VTF TLI G C   RVD AL+         LK D++
Sbjct: 314 KECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLV 373

Query: 215 RVYN--------------------------VKPDGQVFASLIKGLCAVGELSLALGVKEE 248
            +YN                          + PD   + +L+ G C  G+L LAL +++E
Sbjct: 374 -LYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKE 432

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           MV++ I++D   ++++IS L + G+  +    L+EM   G KP+  TY  ++ GFCK+ D
Sbjct: 433 MVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGD 492

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +  F +L EM   G     I+YNV++ GLCK G+
Sbjct: 493 VKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQ 527



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 151/342 (44%), Gaps = 41/342 (11%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           AH +     +LLH+  ++++ G+         IL         +    +F  ++  Y   
Sbjct: 122 AHRMNQQAESLLHF--VVSRKGKGSASSVFASILET----KGTLSSSFVFDALMSVYTEF 175

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSY 155
             +  A+Q F      N+++       LL   +         E + +I++    P+  ++
Sbjct: 176 GYVSDAIQCFRLTKKHNLKIPFNGCKCLLERMIKMSSPMVALEFYLEILDSGYPPNVYTF 235

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK----- 210
           N+L++      +++DA  +FDE+ K  LQPT V+F TLI G C    ++E  +LK     
Sbjct: 236 NVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEE 295

Query: 211 -----------------------EDIMRVY------NVKPDGQVFASLIKGLCAVGELSL 241
                                  ED   ++       + P+   F +LI G C  G + L
Sbjct: 296 FRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDL 355

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           AL + ++M    ++ D  +Y++LI  L K G   E    + EM +RG  P+  TY  L+ 
Sbjct: 356 ALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLD 415

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G CKE D E A  +  EM  +G + + +++  I+ GLC+DGK
Sbjct: 416 GSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGK 457



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 125/269 (46%), Gaps = 5/269 (1%)

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           D  +VP ++ F  +I    +   ++ AL+++ +M +  ++  +  +NTL++     G   
Sbjct: 330 DRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFR 389

Query: 136 RMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
             ++    M K  + PD  +Y  L+ G      LE A ++  EMVK  +Q   V F  +I
Sbjct: 390 EARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAII 449

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
            GLC + ++ +A +   +++R   +KPD   +  ++ G C  G++ +   + +EM  D  
Sbjct: 450 SGLCRDGKIVDAERTLREMLRA-GLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGH 508

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
                 Y+ L++ L K G+      +L  M   G  P+ +TYN L+ G CK         
Sbjct: 509 IPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKLGDFQN 568

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  EM   G  ++  SY  +L  L K  K
Sbjct: 569 VKTEM---GLVSDYASYRSLLHELSKASK 594


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 164/327 (50%), Gaps = 17/327 (5%)

Query: 15  QKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 74
           + D  LAL+ FK+   +         K F++  L Y ++I KL   +  D +Q +L Q+K
Sbjct: 53  EHDITLALEYFKSIANS---------KSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMK 103

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
            +  I   E +F +VIG Y RA   E+AL+ F  M  F V+ TVK +N +L+  L   + 
Sbjct: 104 LEG-ISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRF 162

Query: 135 DRMKELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
             +  ++  M+K  + P+  +YNIL+     + R++ A K+  EM  +   P  V++ TL
Sbjct: 163 QMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTL 222

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I  LC   +V EA +L        +  P   V+ +LI G+C       A  + +EM+   
Sbjct: 223 ISSLCKLGKVKEAREL------AMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKG 276

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           I+ +   Y+++I+AL  AG      A+L +M  RGC PN  T+ +LI GF  +     A 
Sbjct: 277 IDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEAL 336

Query: 314 TILDEMGDKGCKANPISYNVILGGLCK 340
              D M  +G   N ++YN ++ GLC 
Sbjct: 337 DFWDRMIREGVVPNVVAYNALMHGLCS 363



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 142/300 (47%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           N++ Y  II  L  A   +    +L ++       P    F ++I GF+ +    E AL 
Sbjct: 280 NVISYTTIINALSDAGNVELSLAVLAKM-FARGCSPNLHTFTSLIKGFFLKGGSHE-ALD 337

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
            +D M    V   V  +N L++   +   L     +F  ME     P+  +Y+ LI G  
Sbjct: 338 FWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYA 397

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            +  L+ A +V++ M+     P +V +  ++  LC     ++A  L E+ M+V N  P+ 
Sbjct: 398 KAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIEN-MQVENCPPNT 456

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             F + IKGLC  G +  A+ V ++M       +   Y+ L+ +L K  R  E   ++K+
Sbjct: 457 VTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKD 516

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M+ RG + N VTYN +I G+C       A  +L +M  +G K + I+ N+++   CK GK
Sbjct: 517 MEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGK 576



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 120/266 (45%), Gaps = 10/266 (3%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           +VP  + +  ++      R L  A+ +F++M        V+ ++ L++     G LD   
Sbjct: 347 VVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGAS 406

Query: 139 ELFQIMEKYVSPDACSYNILIHGCVV-----SRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           E++  M  +     C  N++ + C+V     +     A+ + + M      P  VTF T 
Sbjct: 407 EVWNWMITH----GCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTF 462

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I GLC   RVD A+K+  D M      P+   +  L+  L        A G+ ++M    
Sbjct: 463 IKGLCGSGRVDWAIKVF-DQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRG 521

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           IE++   Y+++I     AG   E   +L +M  RG KP+++T N +I  +CK+     A 
Sbjct: 522 IELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAI 581

Query: 314 TILDEMGDKGCKANPISYNVILGGLC 339
            ++D +       + I+Y  ++ G+C
Sbjct: 582 QLMDRLSAGKWHPDIIAYTSLISGIC 607



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 118/280 (42%), Gaps = 5/280 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           N+  Y  +I    +A   D   ++ + +  H     P  + +  ++    R  +  +A  
Sbjct: 385 NVRTYSALIDGYAKAGDLDGASEVWNWMITHGCH--PNVVAYTCMVDVLCRNSMFNQAYC 442

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCV 163
           + + M   N       FNT +      G++D   ++F Q+      P+  +YN L+   +
Sbjct: 443 LIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLL 502

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
             RR  +A+ +  +M  R ++  LVT+ T+IYG C    + EAL+L    M V   KPD 
Sbjct: 503 KDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGK-MVVRGTKPDA 561

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
                +I   C  G++++A+ + + +   K   D   Y+SLIS +       E    L+ 
Sbjct: 562 ITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRR 621

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           M   G  PN  T+N L+           A   LD +   G
Sbjct: 622 MLSEGISPNVATWNVLVRHLFSNMGHSGAVQFLDAVLGSG 661



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 130/291 (44%), Gaps = 3/291 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ ++  L   +   +   + +Q++ +    P    +  +I  Y +A  L+ A ++
Sbjct: 350 NVVAYNALMHGLCSKRSLGDAVSVFNQMEING-CCPNVRTYSALIDGYAKAGDLDGASEV 408

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           ++ M +      V  +  +++        ++   L + M+ +   P+  ++N  I G   
Sbjct: 409 WNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCG 468

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S R++ A KVFD+M      P   T+  L+  L  + R  EA  L +D M    ++ +  
Sbjct: 469 SGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKD-MEHRGIELNLV 527

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + ++I G C  G L  AL +  +MV    + DA   + +I A  K G+ N    ++  +
Sbjct: 528 TYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRL 587

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
                 P+ + Y +LISG C     E A   L  M  +G   N  ++NV++
Sbjct: 588 SAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLV 638



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 1/164 (0%)

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
            +  + T +T+  +I  L  E  +D    L +  M++  +     +F S+I      G  
Sbjct: 69  SKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQ-MKLEGISCSEDLFISVIGSYRRAGSS 127

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             AL     M   +++    IY+ ++ AL    R      I   MK+ G +PN  TYN L
Sbjct: 128 EQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNIL 187

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +   CK    + A  +L EM  KGC  + +SY  ++  LCK GK
Sbjct: 188 LKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGK 231



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 59/138 (42%)

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           AL+  + I    + K     +  +I+ L +  E+     + ++M  + I     ++ S+I
Sbjct: 59  ALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVI 118

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
            +  +AG   +       M++   KP    YN ++     E  F+    I   M   G +
Sbjct: 119 GSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGME 178

Query: 326 ANPISYNVILGGLCKDGK 343
            N  +YN++L  LCK+ +
Sbjct: 179 PNVFTYNILLKALCKNNR 196


>gi|297724885|ref|NP_001174806.1| Os06g0499301 [Oryza sativa Japonica Group]
 gi|52076487|dbj|BAD45366.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|125597333|gb|EAZ37113.1| hypothetical protein OsJ_21452 [Oryza sativa Japonica Group]
 gi|255677074|dbj|BAH93534.1| Os06g0499301 [Oryza sativa Japonica Group]
          Length = 642

 Score =  144 bits (363), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 145/285 (50%), Gaps = 3/285 (1%)

Query: 60  AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK 119
            +  D   +ILH++     + P +  +  V+     A  ++ A+ +  EM +  V +  +
Sbjct: 186 GRYLDVALRILHEIIPGWDLAPDKFTYSTVVSALADAGRVDDAVALVHEMVADGV-VAAE 244

Query: 120 FFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
            FN +L   L  G +    +LF  M+ K   P   +YN+L+HG +V  R   A  V   M
Sbjct: 245 AFNPVLRAMLRAGDVKGAAKLFGFMQLKGCVPTTATYNVLVHGLLVCGRAGAAMGVMRRM 304

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
            +  + P ++T+G ++ GL    RV +A K+ E++ R   +  +  V++++I G C  GE
Sbjct: 305 EREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMER-NGLAWNEFVYSTVITGFCKSGE 363

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           +  AL V E MV   +  +  +YS++I  L   G+  E   + +EM    C PN +TY +
Sbjct: 364 IDCALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIHSKCAPNIITYGS 423

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +I G+ K  D   A ++ +EM   GC  N +SY++++ GLC  G+
Sbjct: 424 IIQGYFKIGDTSRALSVWEEMIGAGCVPNAVSYSILINGLCNVGR 468



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 146/294 (49%), Gaps = 4/294 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +++ L  A   D+   ++H++  D  +  +   F  V+    RA  ++ A ++F  M
Sbjct: 212 YSTVVSALADAGRVDDAVALVHEMVADGVVAAEA--FNPVLRAMLRAGDVKGAAKLFGFM 269

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
                  T   +N L++  L CG+      + + ME+  V P   +Y  ++ G V   R+
Sbjct: 270 QLKGCVPTTATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRV 329

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           +DAWKV +EM +  L      + T+I G C    +D ALK+ E  M    V+P+  ++++
Sbjct: 330 KDAWKVAEEMERNGLAWNEFVYSTVITGFCKSGEIDCALKVWE-AMVASPVRPNVVLYSA 388

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I GL   G+++ A  +  EM+  K   +   Y S+I   FK G  +   ++ +EM   G
Sbjct: 389 MIGGLANFGKMTEAELLFREMIHSKCAPNIITYGSIIQGYFKIGDTSRALSVWEEMIGAG 448

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           C PN+V+Y+ LI+G C     + A  +   M D+GC  + I+Y  ++ GLC  G
Sbjct: 449 CVPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSG 502



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 107/264 (40%), Gaps = 37/264 (14%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +N   Y  +IT   ++   D   ++   +   + + P  +++  +IG       +  A  
Sbjct: 346 WNEFVYSTVITGFCKSGEIDCALKVWEAMVA-SPVRPNVVLYSAMIGGLANFGKMTEAEL 404

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCV 163
           +F EM        +  + +++      G   R   +++ ++     P+A SY+ILI+G  
Sbjct: 405 LFREMIHSKCAPNIITYGSIIQGYFKIGDTSRALSVWEEMIGAGCVPNAVSYSILINGLC 464

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              RL+DA  V+  M+ R   P  + + ++I GLC+   VD  L+L  D++   +  PD 
Sbjct: 465 NVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDV 524

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             +  L+ GL    +L  A             MD                      +L  
Sbjct: 525 ISYNVLLDGLLLAKDLPRA-------------MD----------------------LLNR 549

Query: 284 MKERGCKPNSVTYNALISGFCKEE 307
           M ++GC P++VT N  +  F   E
Sbjct: 550 MLDQGCDPDTVTCNIFLREFGAGE 573


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  144 bits (363), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 164/327 (50%), Gaps = 17/327 (5%)

Query: 15  QKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 74
           + D  LAL+ FK+   +         K F++  L Y ++I KL   +  D +Q +L Q+K
Sbjct: 53  EHDITLALEYFKSIANS---------KSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMK 103

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
            +  I   E +F +VIG Y RA   E+AL+ F  M  F V+ TVK +N +L+  L   + 
Sbjct: 104 LEG-ISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRF 162

Query: 135 DRMKELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
             +  ++  M+K  + P+  +YNIL+     + R++ A K+  EM  +   P  V++ TL
Sbjct: 163 QMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTL 222

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I  LC   +V EA +L        +  P   V+ +LI G+C       A  + +EM+   
Sbjct: 223 ISSLCKLGKVKEAREL------AMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKG 276

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           I+ +   Y+++I+AL  AG      A+L +M  RGC PN  T+ +LI GF  +     A 
Sbjct: 277 IDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEAL 336

Query: 314 TILDEMGDKGCKANPISYNVILGGLCK 340
              D M  +G   N ++YN ++ GLC 
Sbjct: 337 DFWDRMIREGVVPNVVAYNALMHGLCS 363



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 142/300 (47%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           N++ Y  II  L  A   +    +L ++       P    F ++I GF+ +    E AL 
Sbjct: 280 NVISYTTIINALSDAGNVELSLAVLAKM-FARGCSPNLHTFTSLIKGFFLKGGSHE-ALD 337

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
            +D M    V   V  +N L++   +   L     +F  ME     P+  +Y+ LI G  
Sbjct: 338 FWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYA 397

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            +  L+ A +V++ M+     P +V +  ++  LC     ++A  L E+ M+V N  P+ 
Sbjct: 398 KAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIEN-MQVENCPPNT 456

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             F + IKGLC  G +  A+ V ++M       +   Y+ L+ +L K  R  E   ++K+
Sbjct: 457 VTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKD 516

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M+ RG + N VTYN +I G+C       A  +L +M  +G K + I+ N+++   CK GK
Sbjct: 517 MEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGK 576



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 120/266 (45%), Gaps = 10/266 (3%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           +VP  + +  ++      R L  A+ +F++M        V+ ++ L++     G LD   
Sbjct: 347 VVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGAS 406

Query: 139 ELFQIMEKYVSPDACSYNILIHGCVV-----SRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           E++  M  +     C  N++ + C+V     +     A+ + + M      P  VTF T 
Sbjct: 407 EVWNWMITH----GCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTF 462

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I GLC   RVD A+K+  D M      P+   +  L+  L        A G+ ++M    
Sbjct: 463 IKGLCGSGRVDWAIKVF-DQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRG 521

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           IE++   Y+++I     AG   E   +L +M  RG KP+++T N +I  +CK+     A 
Sbjct: 522 IELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAI 581

Query: 314 TILDEMGDKGCKANPISYNVILGGLC 339
            ++D +       + I+Y  ++ G+C
Sbjct: 582 QLMDRLSAGKWHPDIIAYTSLISGIC 607



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 116/274 (42%), Gaps = 5/274 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           N+  Y  +I    +A   D   ++ + +  H     P  + +  ++    R  +  +A  
Sbjct: 385 NVRTYSALIDGYAKAGDLDGASEVWNWMITHGCH--PNVVAYTCMVDVLCRNSMFNQAYC 442

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCV 163
           + + M   N       FNT +      G++D   ++F Q+      P+  +YN L+   +
Sbjct: 443 LIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLL 502

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
             RR  +A+ +  +M  R ++  LVT+ T+IYG C    + EAL+L    M V   KPD 
Sbjct: 503 KDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGK-MVVRGTKPDA 561

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
                +I   C  G++++A+ + + +   K   D   Y+SLIS +       E    L+ 
Sbjct: 562 ITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRR 621

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           M   G  PN  T+N L+           A   LD
Sbjct: 622 MLSEGISPNVATWNVLVRHLFSNMGHSGAVQFLD 655



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 130/291 (44%), Gaps = 3/291 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ ++  L   +   +   + +Q++ +    P    +  +I  Y +A  L+ A ++
Sbjct: 350 NVVAYNALMHGLCSKRSLGDAVSVFNQMEING-CCPNVRTYSALIDGYAKAGDLDGASEV 408

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           ++ M +      V  +  +++        ++   L + M+ +   P+  ++N  I G   
Sbjct: 409 WNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCG 468

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S R++ A KVFD+M      P   T+  L+  L  + R  EA  L +D M    ++ +  
Sbjct: 469 SGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKD-MEHRGIELNLV 527

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + ++I G C  G L  AL +  +MV    + DA   + +I A  K G+ N    ++  +
Sbjct: 528 TYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRL 587

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
                 P+ + Y +LISG C     E A   L  M  +G   N  ++NV++
Sbjct: 588 SAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLV 638



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 1/164 (0%)

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
            +  + T +T+  +I  L  E  +D    L +  M++  +     +F S+I      G  
Sbjct: 69  SKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQ-MKLEGISCSEDLFISVIGSYRRAGSS 127

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             AL     M   +++    IY+ ++ AL    R      I   MK+ G +PN  TYN L
Sbjct: 128 EQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNIL 187

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +   CK    + A  +L EM  KGC  + +SY  ++  LCK GK
Sbjct: 188 LKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGK 231



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 61/144 (42%)

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E  +  AL+  + I    + K     +  +I+ L +  E+     + ++M  + I     
Sbjct: 53  EHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSED 112

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           ++ S+I +  +AG   +       M++   KP    YN ++     E  F+    I   M
Sbjct: 113 LFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNM 172

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
              G + N  +YN++L  LCK+ +
Sbjct: 173 KKDGMEPNVFTYNILLKALCKNNR 196


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score =  144 bits (363), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 155/300 (51%), Gaps = 10/300 (3%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS 110
           + ++T LGR +    M ++L +++   +I P  + F  ++    +AR ++ ALQ+FD + 
Sbjct: 285 NALLTWLGRGRDIKRMNELLAEME-KRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLR 343

Query: 111 S------FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME--KYVSPDACSYNILIHGC 162
                    V+  V  FNTL++     GK +    L + M+      P+  +YN LI G 
Sbjct: 344 GKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGF 403

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             +   + A ++F +M +  +QP ++T  TL+ GLC   RV  A++   + M+   +K +
Sbjct: 404 FKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNE-MKGKGLKGN 462

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + +LI   C V  ++ A+   EEM+      DA +Y SLIS L  AGR N+   ++ 
Sbjct: 463 AATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVS 522

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++K  G   +   YN LISGFCK++  E  + +L EM + G K + I+YN ++  L K G
Sbjct: 523 KLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTG 582



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 100/195 (51%), Gaps = 6/195 (3%)

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           DA S N L+      R ++   ++  EM KR+++P++VTFG L+  LC   R+DEAL++ 
Sbjct: 280 DAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVF 339

Query: 211 EDI-----MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI-YSSL 264
           + +          V+PD  +F +LI GLC VG+    L + EEM    I     + Y+ L
Sbjct: 340 DRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCL 399

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           I   FKAG  +    + ++M E G +PN +T N L+ G CK      A    +EM  KG 
Sbjct: 400 IDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGL 459

Query: 325 KANPISYNVILGGLC 339
           K N  +Y  ++   C
Sbjct: 460 KGNAATYTALISAFC 474



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 149/344 (43%), Gaps = 44/344 (12%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK-----HDTRIVPKEIIFCNVIGFYGR 95
           +  R +++ + +++  L +A+  DE  Q+  +L+     +   + P  ++F  +I    +
Sbjct: 310 RKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCK 369

Query: 96  ARLLERALQMFDEMSSFNVQM-TVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDAC 153
               E  L + +EM   N+       +N L++     G  DR  ELF Q+ E+ V P+  
Sbjct: 370 VGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVI 429

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           + N L+ G     R+  A + F+EM  + L+    T+  LI   C    ++ A++  E++
Sbjct: 430 TLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEM 489

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           +      PD  V+ SLI GLC  G ++ A  V  ++      +D   Y+ LIS   K  +
Sbjct: 490 LS-SGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKK 548

Query: 274 KNEFPAILKEMKERGCKPNSVTYN-----------------------------------A 298
                 +L EM+E G KP+++TYN                                   A
Sbjct: 549 LERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGA 608

Query: 299 LISGFCKEEDFEAAFTILDEM-GDKGCKANPISYNVILGGLCKD 341
           +I  +C +++ +    I  EM        N + YN+++  LC++
Sbjct: 609 IIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRN 652



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 9/218 (4%)

Query: 134 LDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR------LQPT 186
           + RM EL   MEK  + P   ++ IL++    +RR+++A +VFD +  +       ++P 
Sbjct: 297 IKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPD 356

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV-KPDGQVFASLIKGLCAVGELSLALGV 245
           +V F TLI GLC   + ++ L L E+ M++ N+ +P+   +  LI G    G    A  +
Sbjct: 357 VVLFNTLIDGLCKVGKEEDGLSLLEE-MKMGNINRPNTVTYNCLIDGFFKAGNFDRAHEL 415

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
             +M  + ++ +    ++L+  L K GR +       EMK +G K N+ TY ALIS FC 
Sbjct: 416 FRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCG 475

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +   A    +EM   GC  + + Y  ++ GLC  G+
Sbjct: 476 VNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGR 513



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 119/266 (44%), Gaps = 10/266 (3%)

Query: 87  CN-VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145
           CN ++ + GR R ++R  ++  EM    ++ +V  F  L+N      ++D   ++F  + 
Sbjct: 284 CNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLR 343

Query: 146 KY-------VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL-QPTLVTFGTLIYGL 197
                    V PD   +N LI G     + ED   + +EM    + +P  VT+  LI G 
Sbjct: 344 GKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGF 403

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
                 D A +L    M    V+P+     +L+ GLC  G +  A+    EM    ++ +
Sbjct: 404 FKAGNFDRAHELFRQ-MNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGN 462

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           A  Y++LISA       N      +EM   GC P++V Y +LISG C       A  ++ 
Sbjct: 463 AATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVS 522

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
           ++   G   +   YNV++ G CK  K
Sbjct: 523 KLKLAGFSLDRSCYNVLISGFCKKKK 548



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 147/337 (43%), Gaps = 39/337 (11%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R N + Y+ +I    +A  FD   ++  Q+  +  + P  I    ++    +   + RA+
Sbjct: 390 RPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEG-VQPNVITLNTLVDGLCKHGRVHRAV 448

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGC 162
           + F+EM    ++     +  L++       ++R  + F+ ++    SPDA  Y  LI G 
Sbjct: 449 EFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGL 508

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
            ++ R+ DA  V  ++           +  LI G C + +++   +L  + M    VKPD
Sbjct: 509 CIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTE-MEETGVKPD 567

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRD------------------KIEMDAG----- 259
              + +LI  L   G+ + A  V E+M+++                  K  +D G     
Sbjct: 568 TITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFG 627

Query: 260 -------------IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
                        IY+ LI AL +    +   +++++MK +  +PN+ TYNA++ G   +
Sbjct: 628 EMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDK 687

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +    AF ++D M ++ C+ + I+  V+   L   G+
Sbjct: 688 KMLHKAFELMDRMVEEACRPDYITMEVLTEWLSAVGE 724



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 17/206 (8%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           SP  C  + L+   + S R  DA  V DEM +          G +++G  +  R   +  
Sbjct: 173 SPQLC--HGLLRVLLKSGRAGDALHVLDEMPQA--NSGFSVTGEIVFGELV--RSGRSFP 226

Query: 209 LKEDIMRVY-----NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
             E +  V       V PDG     L+  LC   +  +A  V   ++R    +DA   ++
Sbjct: 227 DGEVVGLVAKLGERGVFPDGFKLTQLVGKLCGDQKNGVAWEVLHCVMRLGGAVDAASCNA 286

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK- 322
           L++ L +         +L EM++R  +P+ VT+  L++  CK    + A  + D +  K 
Sbjct: 287 LLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKG 346

Query: 323 -----GCKANPISYNVILGGLCKDGK 343
                G + + + +N ++ GLCK GK
Sbjct: 347 GSNWVGVEPDVVLFNTLIDGLCKVGK 372


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 90/264 (34%), Positives = 142/264 (53%), Gaps = 2/264 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           +VP  + +  +I  Y     L++A    DEM S  +  ++  +N  ++     G++    
Sbjct: 317 LVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDAD 376

Query: 139 ELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            + + M EK + PDA ++NILI+G       + A+ + DEMV + +QPTLVT+ +LIY L
Sbjct: 377 NMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVL 436

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
               R+ EA  L   I +   + PD  VF +LI G CA G +  A  + +EM   K+  D
Sbjct: 437 GKRNRMKEADALFSKIQQ-EGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPD 495

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y++L+    + G+  E   +L EMK RG KP+ ++YN LISG+ K  D + AF + D
Sbjct: 496 EITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRD 555

Query: 318 EMGDKGCKANPISYNVILGGLCKD 341
           EM   G     ++YN ++ GLCK+
Sbjct: 556 EMMTTGFDPTILTYNALIQGLCKN 579



 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 155/298 (52%), Gaps = 5/298 (1%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQMF 106
           L +DL++      K  +E  +  + +K +   VP  I  CN ++  + +    + A  ++
Sbjct: 147 LIFDLLVRAYCELKKPNEALECFYLIK-EKGFVPN-IETCNQMLSLFLKLNRTQMAWVLY 204

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVS 165
            EM   N++ ++  FN ++N     GKL + KE    ME   V P+  +YN +IHG  + 
Sbjct: 205 AEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLR 264

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            + + A  +F  M  + L+P   T+ + I GLC E R++EA  L   ++    + P+   
Sbjct: 265 GKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEG-GLVPNAVT 323

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + +LI G C  G+L  A   ++EM+   I      Y+  I ALF  GR  +   ++KEM+
Sbjct: 324 YNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMR 383

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           E+G  P++VT+N LI+G+C+  D + AF +LDEM  KG +   ++Y  ++  L K  +
Sbjct: 384 EKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNR 441



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 150/302 (49%), Gaps = 3/302 (0%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
            R +L  ++++I  L +     + ++ +  ++    + P  + +  +I  +      +RA
Sbjct: 212 IRSSLYTFNIMINVLCKEGKLKKAKEFIGHME-TLGVKPNVVTYNTIIHGHCLRGKFQRA 270

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
             +F  M    ++     +N+ ++     G+L+    L  +++E  + P+A +YN LI G
Sbjct: 271 RVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDG 330

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 L+ A+   DEM+ + +  +LVT+   I+ L +E R+ +A  + ++ MR   + P
Sbjct: 331 YCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKE-MREKGMMP 389

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D      LI G C  G+   A G+ +EMV   I+     Y+SLI  L K  R  E  A+ 
Sbjct: 390 DAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALF 449

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            ++++ G  P+ + +NALI G C   + + AF +L EM +     + I+YN ++ G C++
Sbjct: 450 SKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCRE 509

Query: 342 GK 343
           GK
Sbjct: 510 GK 511



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 135/270 (50%), Gaps = 9/270 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y+L I  L       +   ++ +++ +  ++P  +    +I  Y R    +RA  +
Sbjct: 355 SLVTYNLFIHALFMEGRMGDADNMIKEMR-EKGMMPDAVTHNILINGYCRCGDAKRAFGL 413

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE---LF-QIMEKYVSPDACSYNILIHG 161
            DEM    +Q T+  + +L+      GK +RMKE   LF +I ++ + PD   +N LI G
Sbjct: 414 LDEMVGKGIQPTLVTYTSLI---YVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDG 470

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              +  ++ A+++  EM   ++ P  +T+ TL+ G C E +V+EA +L +++ R   +KP
Sbjct: 471 HCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKR-RGIKP 529

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +LI G    G++  A  V++EM+    +     Y++LI  L K         +L
Sbjct: 530 DHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELL 589

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEA 311
           KEM  +G  P+  TY ++I      +D E 
Sbjct: 590 KEMVSKGITPDDSTYLSIIEAMETVDDLEG 619


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 157/300 (52%), Gaps = 6/300 (2%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ + + Y  ++  L  AK +++++++  ++  +   +P E+ F  ++ F+ R  ++ERA
Sbjct: 277 FQPDTVSYTTVLKGLCAAKRWEDVEELFAEMM-EKNCMPNEVTFDMLVRFFCRGGMVERA 335

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
           +Q+ ++MS           N ++N     G++D   +    M  Y  SPD  SY  ++ G
Sbjct: 336 IQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKG 395

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              + R EDA ++  EMV++   P  VTF T I  LC +  +++A  L E  M  +  + 
Sbjct: 396 LCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQ-MSEHGCEV 454

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   + +L+ G C  G +  AL +   M     + +   Y++L++ L  A R +    +L
Sbjct: 455 NIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAELL 511

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM ++ C PN VT+N L+S FC++   + A  ++++M + GC  N I+YN +L G+ KD
Sbjct: 512 AEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKD 571



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 139/306 (45%), Gaps = 6/306 (1%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           P+ P  Y    Y  II  L       E   +L  + H     P  + +  ++    ++  
Sbjct: 171 PVAPDAYT---YTPIIRGLCDRGRVGEALSLLDDMLHRG-CQPSVVTYTVLLEAVCKSTG 226

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
             +A+++ DEM +      +  +N ++N     G++D  +E    +  Y   PD  SY  
Sbjct: 227 FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTT 286

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           ++ G   ++R ED  ++F EM+++   P  VTF  L+   C    V+ A+++ E  M  +
Sbjct: 287 VLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQ-MSGH 345

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
               +  +   +I  +C  G +  A      M       D   Y++++  L +A R  + 
Sbjct: 346 GCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDA 405

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +LKEM  + C PN VT+N  I   C++   E A  ++++M + GC+ N ++YN ++ G
Sbjct: 406 KELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNG 465

Query: 338 LCKDGK 343
            C  G+
Sbjct: 466 FCVQGR 471



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 144/296 (48%), Gaps = 4/296 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           + + Y  ++  L RA+ +++ +++L ++       P E+ F   I    +  L+E+A  +
Sbjct: 385 DTISYTTVLKGLCRAERWEDAKELLKEMVRKN-CPPNEVTFNTFICILCQKGLIEQATML 443

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
            ++MS    ++ +  +N L+N     G++D   ELF  M     P+  +Y  L+ G   +
Sbjct: 444 IEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP--CKPNTITYTTLLTGLCNA 501

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            RL+ A ++  EM+++   P +VTF  L+   C +  +DEA++L E +M  +   P+   
Sbjct: 502 ERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMME-HGCTPNLIT 560

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + +L+ G+        AL +   +V + +  D   YSS+I  L +  R  E   +   ++
Sbjct: 561 YNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQ 620

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           + G +P +V YN ++   CK  + + A      M   GC  N ++Y  ++ GL  +
Sbjct: 621 DLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANE 676



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 3/223 (1%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           +NTL+      G+LD  + L   M   V+PDA +Y  +I G     R+ +A  + D+M+ 
Sbjct: 147 YNTLVAGYCRYGQLDAARRLIASMP--VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLH 204

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           R  QP++VT+  L+  +C      +A+++ ++ MR     P+   +  +I G+C  G + 
Sbjct: 205 RGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDE-MRAKGCTPNIVTYNVIINGMCREGRVD 263

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A      +     + D   Y++++  L  A R  +   +  EM E+ C PN VT++ L+
Sbjct: 264 DAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLV 323

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             FC+    E A  +L++M   GC AN    N+++  +CK G+
Sbjct: 324 RFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGR 366



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 144/296 (48%), Gaps = 6/296 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y +++  + ++  F +  ++L +++      P  + +  +I    R   ++ A + 
Sbjct: 210 SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKG-CTPNIVTYNVIINGMCREGRVDDAREF 268

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            + +SS+  Q     + T+L       + + ++ELF ++MEK   P+  ++++L+     
Sbjct: 269 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCR 328

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +E A +V ++M              +I  +C + RVD+A +   + M  Y   PD  
Sbjct: 329 GGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNN-MGSYGCSPDTI 387

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +++KGLC       A  + +EMVR     +   +++ I  L + G   +   ++++M
Sbjct: 388 SYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQM 447

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            E GC+ N VTYNAL++GFC +   ++A  +   M    CK N I+Y  +L GLC 
Sbjct: 448 SEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCN 500



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 4/173 (2%)

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           A ++ D    R   P +     LI  LC   R  +A ++     R      D   + +L+
Sbjct: 93  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAER-SGTAVDVFAYNTLV 151

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
            G C  G+L  A  +   M    +  DA  Y+ +I  L   GR  E  ++L +M  RGC+
Sbjct: 152 AGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQ 208

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           P+ VTY  L+   CK   F  A  +LDEM  KGC  N ++YNVI+ G+C++G+
Sbjct: 209 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGR 261



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 4/191 (2%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           +PD      LI       R  DA +V     +      +  + TL+ G C   ++D A +
Sbjct: 106 APDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARR 165

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           L   +     V PD   +  +I+GLC  G +  AL + ++M+    +     Y+ L+ A+
Sbjct: 166 LIASM----PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAV 221

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K+    +   +L EM+ +GC PN VTYN +I+G C+E   + A   L+ +   G + + 
Sbjct: 222 CKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDT 281

Query: 329 ISYNVILGGLC 339
           +SY  +L GLC
Sbjct: 282 VSYTTVLKGLC 292


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 160/310 (51%), Gaps = 14/310 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L  Y+ +I     +  + E Q++L ++  + +I P  + +  +I  Y + R    A ++
Sbjct: 283 DLFTYNCMIDGFCSSGRWSEAQRLLQEML-ERKINPNVVTYSALINAYVKERKFFEAEEL 341

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           +DEM    +      +N++++      +LD  + +F +M  K  SPD  ++N LI G   
Sbjct: 342 YDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCG 401

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           ++R++D  ++  EM +  L     T+ TLI+G CL   ++ AL L + ++    V PD  
Sbjct: 402 AKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMIS-SGVCPDIV 460

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG-----------IYSSLISALFKAGR 273
              +L+ GLC  G+L  AL + + M + K+++DA             Y+ LIS L   G+
Sbjct: 461 TCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGK 520

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   + KEM  RG  PN++TY+++I+G CK+   + A  + D MG K    + +++N 
Sbjct: 521 FLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNT 580

Query: 334 ILGGLCKDGK 343
           ++ G CK G+
Sbjct: 581 LVSGYCKAGR 590



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 126/242 (52%), Gaps = 3/242 (1%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161
           AL  F +++    Q  V  F+TLL+    C + DR+ E   +  +   P+  ++  L++G
Sbjct: 131 ALSTFGKITKLGFQPDVVTFSTLLHG--LCVE-DRVSEALDLFHQMCRPNVVTFTTLMNG 187

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                R+ +A  + D MV+  LQP  +T+GT++ G+C       AL L   +  + ++KP
Sbjct: 188 LCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKP 247

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +  +++++I GL   G  S A  +  EM    I  D   Y+ +I     +GR +E   +L
Sbjct: 248 NVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLL 307

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           +EM ER   PN VTY+ALI+ + KE  F  A  + DEM  +G   N I+YN ++ G CK 
Sbjct: 308 QEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQ 367

Query: 342 GK 343
            +
Sbjct: 368 NR 369



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 139/269 (51%), Gaps = 7/269 (2%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           +R +P  I F  ++G   R    +  + ++ +M    +   V  FN L+    +C KL  
Sbjct: 71  SRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPF 130

Query: 137 MKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
               F +I +    PD  +++ L+HG  V  R+ +A  +F +M +    P +VTF TL+ 
Sbjct: 131 ALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCR----PNVVTFTTLMN 186

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR-DKI 254
           GLC E RV EA+ L  D M    ++P+   + +++ G+C +G+   AL +  +M     I
Sbjct: 187 GLCREGRVVEAVALL-DRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHI 245

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           + +  IYS++I  L+K GR ++   +  EM+E+G  P+  TYN +I GFC    +  A  
Sbjct: 246 KPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQR 305

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +L EM ++    N ++Y+ ++    K+ K
Sbjct: 306 LLQEMLERKINPNVVTYSALINAYVKERK 334



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/255 (31%), Positives = 130/255 (50%), Gaps = 8/255 (3%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP 150
           GF+   + LE A+ +F +M       +V  FN L+   +   + D +  L+Q ME+   P
Sbjct: 51  GFH-EIKGLEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIP 109

Query: 151 -DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
            D  S+NILI       +L  A   F ++ K   QP +VTF TL++GLC+E RV EAL L
Sbjct: 110 CDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDL 169

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
              + R     P+   F +L+ GLC  G +  A+ + + MV D ++ +   Y +++  + 
Sbjct: 170 FHQMCR-----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMC 224

Query: 270 KAGRKNEFPAILKEMKERG-CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
           K G       +L++M+E    KPN V Y+A+I G  K+     A  +  EM +KG   + 
Sbjct: 225 KIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDL 284

Query: 329 ISYNVILGGLCKDGK 343
            +YN ++ G C  G+
Sbjct: 285 FTYNCMIDGFCSSGR 299



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 139/286 (48%), Gaps = 14/286 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  ++ +I     AK  D+  ++LH++  +T +V     +  +I  +     L  AL +
Sbjct: 388 DVFTFNTLIDGYCGAKRIDDGTELLHEMT-ETGLVADTTTYNTLIHGFCLVGDLNAALDL 446

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY------------VSPDAC 153
             +M S  V   +   NTLL+     GKL    E+F+ M+K             V PD  
Sbjct: 447 SQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQ 506

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YNILI G +   +  +A +++ EM  R + P  +T+ ++I GLC + R+DEA ++  D 
Sbjct: 507 TYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMF-DS 565

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M   +  PD   F +L+ G C  G +   L +  EM R  I  DA  Y +LI    K G 
Sbjct: 566 MGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGN 625

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            N    I +EM   G  P+++T  ++++    +E+ + A  +L+++
Sbjct: 626 INGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDL 671



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 142/336 (42%), Gaps = 47/336 (13%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I    + + F E +++  ++     I+P  I + ++I  + +   L+ A  M
Sbjct: 318 NVVTYSALINAYVKERKFFEAEELYDEML-PRGIIPNTITYNSMIDGFCKQNRLDAAEHM 376

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F  M++      V  FNTL++      ++D   EL   M E  +  D  +YN LIHG  +
Sbjct: 377 FYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCL 436

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL---------KLKEDIMR 215
              L  A  +  +M+   + P +VT  TL+ GLC   ++ +AL         K+  D  R
Sbjct: 437 VGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASR 496

Query: 216 VYN-VKPDGQVF-----------------------------------ASLIKGLCAVGEL 239
            +N V+PD Q +                                   +S+I GLC    L
Sbjct: 497 PFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRL 556

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A  + + M       D   +++L+S   KAGR ++   +  EM  RG   +++TY  L
Sbjct: 557 DEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITL 616

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           I GF K  +   A  I  EM   G   + I+   +L
Sbjct: 617 IHGFRKVGNINGALDIFQEMISSGVYPDTITIRSML 652


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 161/302 (53%), Gaps = 4/302 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y++++  L +A++  +  ++L +++    + P  + +  VI  + +   ++RA ++
Sbjct: 8   NERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEI 67

Query: 106 FDEMSSFN-VQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
             EM + + +   V  + ++++     GK+DR  E+ + M+ K V PD  +++ LI G  
Sbjct: 68  LREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWC 127

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI-MRVYNV-KP 221
            +R++++A K++ E++    +   V+   LI GLC E R+ EA +L +++ MR     KP
Sbjct: 128 NARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKP 187

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +LI G C  G L  A+ +   M   K   +   YSSL+  L KAG  ++   + 
Sbjct: 188 DVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLF 247

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           + M  +GC PN VTY  LI G C     +AA  ++DEM    C A+ +SYN +L G C+ 
Sbjct: 248 RRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRL 307

Query: 342 GK 343
           G+
Sbjct: 308 GR 309



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 149/302 (49%), Gaps = 6/302 (1%)

Query: 42  PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLER 101
            ++ +++ Y  +I    ++   ++  ++L  ++   + VP  + + +++    +A  L++
Sbjct: 184 AWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEG-RKCVPNVVTYSSLLHGLCKAGDLDQ 242

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILIH 160
           AL +F  M+S      V  + TL++      K+D  + L   M     P D  SYN L+ 
Sbjct: 243 ALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLD 302

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     R+E+A ++F EM  +   P  +T+  L+ G C   R++EA  L E++     + 
Sbjct: 303 GYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGID 362

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   ++ ++ G         A    +EM+   +  +A  YSSLI  L KAGR N    +
Sbjct: 363 PDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEV 422

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           LK +     KP+ VTY  +I G C  +  E A T+L+EM +K  + +  ++N ++G LC+
Sbjct: 423 LKNVD----KPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCR 478

Query: 341 DG 342
            G
Sbjct: 479 LG 480



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQ 104
           N++ Y  +I  L  A   D  + ++ ++       P + +  N ++  Y R   +E A Q
Sbjct: 258 NVVTYTTLIHGLCAAHKVDAARLLMDEMT--ATCCPADTVSYNALLDGYCRLGRIEEAKQ 315

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY--VSPDACSYNILIHGC 162
           +F EM++ +       +  L+       +L+  + L + M+    + PD  +Y+I++ G 
Sbjct: 316 LFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGY 375

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             ++R  +A +   EM+ R + P  VT+ +LI GLC   RV+ A+++ +++      KPD
Sbjct: 376 SRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVD-----KPD 430

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              +  +I+GLC       AL + EEMV  ++E   G ++S+I AL + G  +E   +L 
Sbjct: 431 VVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLV 490

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI-------SYNVIL 335
            M   G +P  VTY  L+ GF +    E A+ + + M  K  K++         +++ ++
Sbjct: 491 AMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQAFSALI 550

Query: 336 GGLCK 340
            GLCK
Sbjct: 551 RGLCK 555



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 145/300 (48%), Gaps = 8/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  ++  L +A   D+   +  ++      VP  + +  +I     A  ++ A  +
Sbjct: 223 NVVTYSSLLHGLCKAGDLDQALDLFRRMTSKG-CVPNVVTYTTLIHGLCAAHKVDAARLL 281

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            DEM++         +N LL+     G+++  K+LF+ M  K   PD  +Y  L+ G   
Sbjct: 282 MDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCN 341

Query: 165 SRRLEDAWKVFDEM-VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
           + RLE+A  + + M     + P +VT+  ++ G     R  EA +  ++++   NV P+ 
Sbjct: 342 ASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMI-ARNVAPNA 400

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             ++SLI GLC  G ++ A+    E++++  + D   Y+ +I  L    R  E   +L+E
Sbjct: 401 VTYSSLIDGLCKAGRVNHAM----EVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEE 456

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M  +  +P+  T+N++I   C+  D + A+ +L  M   G +   ++Y  +L G  + G+
Sbjct: 457 MVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGR 516



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 117/238 (49%), Gaps = 39/238 (16%)

Query: 144 MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK-RRLQPTLVTFGTLIYGLCLELR 202
           M ++V+P+  +YN++++G   +R    A++V  EM   + + P LVT+ T+I G C +  
Sbjct: 1   MREFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGE 60

Query: 203 VDEALKLKEDI-----------------------------------MRVYNVKPDGQVFA 227
           +D A ++  ++                                   M++  V+PD   F+
Sbjct: 61  MDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFS 120

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +LI G C   ++  AL + +E++     +DA   S+LI+ L +  R  E   + +EM+ R
Sbjct: 121 ALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMR 180

Query: 288 ---GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
                KP+ VTY ALI GFCK  + E A  +L  M  + C  N ++Y+ +L GLCK G
Sbjct: 181 EDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAG 238


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 149/304 (49%), Gaps = 3/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + +R N + Y+ I+    R    +   Q+L Q+   T   P  I +  +I  + +A  L 
Sbjct: 364 RGYRPNAITYNNIMHVFCRRNDMERAHQVL-QMMIQTGCPPDAINYSTIISGFCKAGKLR 422

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQI-MEKYVSPDACSYNILI 159
            A  + ++M     +  V   +TL++       +D  +EL ++ +    +PD  +Y+ILI
Sbjct: 423 EAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILI 482

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           H    ++RL +A    D MVK R  P +VT+ +++ GLC   R+++A  L  D MR   V
Sbjct: 483 HALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLF-DRMRAAGV 541

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   ++ +I   C    L  A  + E M   K   D   YS+LI+ L KAG  ++   
Sbjct: 542 MPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFD 601

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + +EM   GC PN VTYN LI G CK    E A  +L+ M  + C  + I+Y  ++ GLC
Sbjct: 602 VFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLC 661

Query: 340 KDGK 343
              +
Sbjct: 662 NASR 665



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 84/265 (31%), Positives = 140/265 (52%), Gaps = 3/265 (1%)

Query: 81   PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
            P    F  +I    RA  +  A ++  EM    V   V   N ++    +  KLD   EL
Sbjct: 875  PNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALEL 934

Query: 141  FQIMEKYVS--PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            F+ ME+  S  PD  +Y+ ++   V S +++DA ++ ++MV +   P +VT+ +L++GLC
Sbjct: 935  FKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLC 994

Query: 199  LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
               ++DEA  L + + R     P+   + ++I G C +G +  A  + EEMV    + + 
Sbjct: 995  KAGKLDEATALLQRMTR-SGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNV 1053

Query: 259  GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
              Y+ L+ A  K G+  +   +++ M E+G  PN  TYN+L+  FCK+++ E A  +L  
Sbjct: 1054 VTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSS 1113

Query: 319  MGDKGCKANPISYNVILGGLCKDGK 343
            M  KGC  N +SYN ++ GLCK  K
Sbjct: 1114 MIQKGCVPNVVSYNTVIAGLCKATK 1138



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 159/327 (48%), Gaps = 11/327 (3%)

Query: 17  DPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD 76
           DP  AL  F+          A     +++ +   + ++  L +A  + +   +    + +
Sbjct: 105 DPGAALVFFE---------WAETRDGYQHEIFCCNCLLNVLVKAHQYSQAHDLFRS-RIE 154

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
            +     + +  +I  + RA  +  A ++FDEM+   ++       ++L      G+   
Sbjct: 155 GQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSD 214

Query: 137 MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
               F+ M K   PD+ +YN +I+G   S RL+DA ++ +EMV     P + ++ T+++G
Sbjct: 215 AVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHG 274

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
            C   RV+ AL L E  M      PD   + ++I GLC + ++  A  V ++M++   + 
Sbjct: 275 FCKANRVENALWLLEQ-MVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQP 333

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +   Y +L+    + G  +    ++++M ERG +PN++TYN ++  FC+  D E A  +L
Sbjct: 334 NVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVL 393

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
             M   GC  + I+Y+ I+ G CK GK
Sbjct: 394 QMMIQTGCPPDAINYSTIISGFCKAGK 420



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 169/345 (48%), Gaps = 27/345 (7%)

Query: 3    TSSIRLACLPRLQKDPKLALQLFKNP---NPNPNDTEAHPLKPFRYNLLHYDLIITKLGR 59
            T +  L  L RL++ PK ALQ+++N    +PN               +  + ++I  L R
Sbjct: 846  TCNCLLQALLRLKR-PKDALQVYRNKLCCSPN---------------MFTFTILIHGLCR 889

Query: 60   AKMFDEMQQILHQL-KHDTRIVPKEIIFCNV-IGFYGRARLLERALQMFDEMS-SFNVQM 116
            A       ++L ++ +H    VP+ +I  NV I     AR L+ AL++F EM  S +   
Sbjct: 890  AGDIGTAYELLKEMPRHG---VPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPP 946

Query: 117  TVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVF 175
             V  ++T+++  +  GK+D    L + M  K  SP+  +Y+ L+HG   + +L++A  + 
Sbjct: 947  DVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALL 1006

Query: 176  DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
              M +    P +VT+ T+I G C   R+DEA  L E+++     +P+   +  L+   C 
Sbjct: 1007 QRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVD-GGCQPNVVTYTVLLDAFCK 1065

Query: 236  VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
             G+   A+G+ E MV      +   Y+SL+    K         +L  M ++GC PN V+
Sbjct: 1066 CGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVS 1125

Query: 296  YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            YN +I+G CK         +L++M    C  + +++N I+  +CK
Sbjct: 1126 YNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCK 1170



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 117/213 (54%), Gaps = 2/213 (0%)

Query: 133  KLDRMKELFQIMEKYV--SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
            +L R K+  Q+    +  SP+  ++ ILIHG   +  +  A+++  EM +  +   ++  
Sbjct: 856  RLKRPKDALQVYRNKLCCSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILH 915

Query: 191  GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
              +I GLC   ++D AL+L +++    +  PD   +++++  L   G++  A  + E+MV
Sbjct: 916  NVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMV 975

Query: 251  RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
                  +   YSSL+  L KAG+ +E  A+L+ M   GC PN VTYN +I G CK    +
Sbjct: 976  SKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRID 1035

Query: 311  AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             A+ +L+EM D GC+ N ++Y V+L   CK GK
Sbjct: 1036 EAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGK 1068



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 143/310 (46%), Gaps = 41/310 (13%)

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           +LH  +      P  + +  +I    ++  L+ A+++ +EM        V  +NT+L+  
Sbjct: 216 VLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGF 275

Query: 129 LTCGKLDRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ 184
               K +R++    ++E+ V+    PD  SY  +I+G     ++++A +V D+M++R  Q
Sbjct: 276 C---KANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQ 332

Query: 185 PTLVTFGTLIYGLCLELRVDEALKL-------------------------KEDIMRVYNV 219
           P ++T+GTL+ G C    +D A++L                         + D+ R + V
Sbjct: 333 PNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQV 392

Query: 220 ---------KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
                     PD   ++++I G C  G+L  A  + E+M+R     D    S+LI AL K
Sbjct: 393 LQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCK 452

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
           A   +    +L+      C P+ V Y+ LI   CK +    A + LD M    C  + ++
Sbjct: 453 AAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVT 512

Query: 331 YNVILGGLCK 340
           YN ++ GLCK
Sbjct: 513 YNSVVDGLCK 522



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 141/295 (47%), Gaps = 4/295 (1%)

Query: 46   NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            N++ Y+ +I  L +A    E   +L Q+  +   VP  + F  +I    +   ++ A ++
Sbjct: 1122 NVVSYNTVIAGLCKATKVHEGVLLLEQMLSNN-CVPDIVTFNTIIDAMCKTYRVDIAYEL 1180

Query: 106  FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY--VSPDACSYNILIHGCV 163
            F+ +        +  +N+L++      + D+ + L + M +    SPD  +YN +I G  
Sbjct: 1181 FNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLC 1240

Query: 164  VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
             S+R++ A+K+F +M+   L P  VT+  +I  LC    +DEA  + E +M      P  
Sbjct: 1241 KSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLE-LMLKNGFDPGA 1299

Query: 224  QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
              + +LI G C  G L  AL + + ++      D   +S  I  L K GR  +   +L+ 
Sbjct: 1300 ITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLET 1359

Query: 284  MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            M   G  P++VTYN L+ GFC     E A  + + M   GC+ +  +Y  ++G L
Sbjct: 1360 MLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHL 1414



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 141/301 (46%), Gaps = 4/301 (1%)

Query: 41   KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
            K +  NL  Y+ ++    +    +   Q+L  +      VP  + +  VI    +A  + 
Sbjct: 1082 KGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKG-CVPNVVSYNTVIAGLCKATKVH 1140

Query: 101  RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILI 159
              + + ++M S N    +  FNT+++      ++D   ELF  I E   +P+  +YN L+
Sbjct: 1141 EGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLV 1200

Query: 160  HGCVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
            HG   SRR + A  +  EM +++   P ++T+ T+I GLC   RVD A KL   ++    
Sbjct: 1201 HGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLS-DG 1259

Query: 219  VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
            + PD   ++ +I  LC    +  A  V E M+++  +  A  Y +LI    K G  ++  
Sbjct: 1260 LAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKAL 1319

Query: 279  AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             IL+ +  +G  P+ VT++  I    K      A  +L+ M   G   + ++YN +L G 
Sbjct: 1320 EILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGF 1379

Query: 339  C 339
            C
Sbjct: 1380 C 1380



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 130/265 (49%), Gaps = 1/265 (0%)

Query: 80   VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
            VP    + +++  + +   +ERA Q+   M        V  +NT++       K+     
Sbjct: 1085 VPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVL 1144

Query: 140  LF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            L  Q++     PD  ++N +I     + R++ A+++F+ + +    P LVT+ +L++GLC
Sbjct: 1145 LLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLC 1204

Query: 199  LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
               R D+A  L  ++ R     PD   + ++I GLC    +  A  +  +M+ D +  D 
Sbjct: 1205 KSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDD 1264

Query: 259  GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
              YS +IS+L K    +E   +L+ M + G  P ++TY  LI GFCK  + + A  IL  
Sbjct: 1265 VTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQL 1324

Query: 319  MGDKGCKANPISYNVILGGLCKDGK 343
            +  KG   + +++++ +  L K G+
Sbjct: 1325 LLSKGSYPDVVTFSIFIDWLSKRGR 1349



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 125/275 (45%), Gaps = 38/275 (13%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y ++I  L +AK   E +  L  +  + R  P  + + +V+    ++R +  A  +
Sbjct: 474 DVVAYSILIHALCKAKRLPEAESWLDVMVKN-RCYPDVVTYNSVVDGLCKSRRINDAFLL 532

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           FD M +  V   V  ++ +++       LD   ++ + M E    PD  +Y+ LI+G   
Sbjct: 533 FDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCK 592

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  ++ A+ VF EM+     P LVT+ TLI GLC   +V++A ++ E IMR  +  PD  
Sbjct: 593 AGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLE-IMRKQSCTPDSI 651

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LI GLC    L       EE  R                            +L+EM
Sbjct: 652 TYTCLINGLCNASRL-------EEAWR----------------------------VLREM 676

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           K++GC P+ +TY  L+    K  + E    +L EM
Sbjct: 677 KDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEM 711



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 136/285 (47%), Gaps = 5/285 (1%)

Query: 46   NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            +++ ++ II  + +    D   + L  L  ++   P  + + +++    ++R  ++A  +
Sbjct: 1157 DIVTFNTIIDAMCKTYRVDIAYE-LFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYL 1215

Query: 106  FDEMS-SFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCV 163
              EM+        +  +NT+++      ++DR  +LF Q++   ++PD  +Y+I+I    
Sbjct: 1216 LREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLC 1275

Query: 164  VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              R +++A  V + M+K    P  +T+GTLI G C    +D+AL++ + ++      PD 
Sbjct: 1276 KWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQ-LLLSKGSYPDV 1334

Query: 224  QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
              F+  I  L   G L  A  + E M+R  +  D   Y++L+     A    +   + + 
Sbjct: 1335 VTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEV 1394

Query: 284  MKERGCKPNSVTYNALISGFCKEEDFEAAFT-ILDEMGDKGCKAN 327
            M++ GC+P++ TY  L+     ++ ++     +   M D G K N
Sbjct: 1395 MRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLN 1439



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%)

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
            RD  + +    + L++ L KA + ++   + +   E     ++VTY+ LISGF +    
Sbjct: 118 TRDGYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKI 177

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
             A+ + DEM  KG KA+   +  IL GLC  G+C
Sbjct: 178 LPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQC 212



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 9/148 (6%)

Query: 169  EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +DA KVF+ M +R +       G  ++      + ++A  L   +M +  V+PD   F S
Sbjct: 1473 QDARKVFEGMDQRNVVLWSAMLGVYVF----HKQEEQAFGLWR-VMGLEGVEPDAVTFLS 1527

Query: 229  LIKGLCAVGELSLALGVKEEMVRD-KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            L+   C  G L  A+     + RD  +E     +S +I  L + G  NE   ++  M   
Sbjct: 1528 LLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGRLGLVNEAEDLMLGMP-- 1585

Query: 288  GCKPNSVTYNALISGFCKEEDFEAAFTI 315
             CKP++ T+N L+S +    DFE A  +
Sbjct: 1586 -CKPSAATWNCLLSAYKICGDFERALRV 1612


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 154/305 (50%), Gaps = 3/305 (0%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LK    NL+ +++II  L R     E  ++L ++      VP E+ +  ++  Y +    
Sbjct: 46  LKGLEPNLITFNMIINGLCRDGRLKETSEVLVEMSRKG-YVPDEVTYNTLVNGYCKEGNF 104

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNIL 158
            +AL +  EM    +   V  + +L+N     G L+R  E F Q+  + + P+  +Y  +
Sbjct: 105 HQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTI 164

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G      L++A++V +EM +    P++VT+  LI G C+  R++EA+ L +D M    
Sbjct: 165 INGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQD-MVGKG 223

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V PD   ++++I G     EL  A  +K EM+   +  DA  YSSLI  L +  R  E  
Sbjct: 224 VLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEAC 283

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            + +EM      P+  TY  LI+ +CKE D   A  + DEM  KG   + ++YNV++ GL
Sbjct: 284 DMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGL 343

Query: 339 CKDGK 343
            K  +
Sbjct: 344 NKQAR 348



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 157/314 (50%), Gaps = 18/314 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  + +A   +   +   Q+ H   + P E  +  +I  + +  LL+ A ++
Sbjct: 122 NVVTYTSLINSMCKAGNLNRAMEFFDQM-HVRGLCPNERTYTTIINGFAQQGLLDEAYRV 180

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            +EM+      ++  +N L+N     G+++    L Q M  K V PD  SY+ +I G   
Sbjct: 181 LNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFAR 240

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           ++ L+ A+++  EM+ + + P  VT+ +LI GLC + R+ EA  + ++++ +  + PD  
Sbjct: 241 NQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTI-KLPPDEF 299

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI   C  G+L+ AL + +EM++     DA  Y+ LI+ L K  R  E   +L ++
Sbjct: 300 TYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKL 359

Query: 285 KERGCKPNSVTYN---------------ALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
                 P++VTYN               AL+ GFC +   + A  + + M +K  K N  
Sbjct: 360 FYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEA 419

Query: 330 SYNVILGGLCKDGK 343
            YNVI+ G C+ G 
Sbjct: 420 IYNVIIHGHCRIGN 433



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 104/194 (53%), Gaps = 1/194 (0%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P+  +YN +I G    +R ++A+     M  + L+P L+TF  +I GLC + R+ E  ++
Sbjct: 16  PNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEV 75

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
             ++ R   V PD   + +L+ G C  G    AL +  EMVR+ +  +   Y+SLI+++ 
Sbjct: 76  LVEMSRKGYV-PDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMC 134

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           KAG  N       +M  RG  PN  TY  +I+GF ++   + A+ +L+EM   G   + +
Sbjct: 135 KAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIV 194

Query: 330 SYNVILGGLCKDGK 343
           +YN ++ G C  G+
Sbjct: 195 TYNALINGHCVLGR 208



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 126/262 (48%), Gaps = 2/262 (0%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           +P  + +  +I  Y + +  + A      M    ++  +  FN ++N     G+L    E
Sbjct: 15  LPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSE 74

Query: 140 -LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            L ++  K   PD  +YN L++G         A  +  EMV+  L P +VT+ +LI  +C
Sbjct: 75  VLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMC 134

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
               ++ A++   D M V  + P+ + + ++I G    G L  A  V  EM R       
Sbjct: 135 KAGNLNRAMEFF-DQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSI 193

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y++LI+     GR  E   +L++M  +G  P+ V+Y+ +ISGF + ++ + AF +  E
Sbjct: 194 VTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVE 253

Query: 319 MGDKGCKANPISYNVILGGLCK 340
           M  K    + ++Y+ ++ GLC+
Sbjct: 254 MIGKSVLPDAVTYSSLIQGLCE 275



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 129/307 (42%), Gaps = 51/307 (16%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  II    +  + DE  ++L+++   +  +P  + +  +I  +     +E A+ +  +M
Sbjct: 161 YTTIINGFAQQGLLDEAYRVLNEMTR-SGFIPSIVTYNALINGHCVLGRMEEAIGLLQDM 219

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIHGCVVSRRL 168
               V   V  ++T+++      +LDR  ++  +++ K V PDA +Y+ LI G    RRL
Sbjct: 220 VGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRL 279

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR--------VYNVK 220
            +A  +F EM+  +L P   T+ TLI   C E  +++AL L +++++         YNV 
Sbjct: 280 TEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVL 339

Query: 221 PDG-----------------------------------------QVFASLIKGLCAVGEL 239
            +G                                         +   +L+KG C  G +
Sbjct: 340 INGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLM 399

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A  V E M+    + +  IY+ +I    + G   +   + KEM      P++VT  AL
Sbjct: 400 DEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLAL 459

Query: 300 ISGFCKE 306
           +     E
Sbjct: 460 VKALFTE 466



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 43/63 (68%)

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            KEM+  GC PN VTYN +I G+CK +  + AF  L  MG KG + N I++N+I+ GLC+
Sbjct: 6   FKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCR 65

Query: 341 DGK 343
           DG+
Sbjct: 66  DGR 68



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 53/97 (54%)

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           +EM R+    +   Y+++I    K  R +E    L+ M  +G +PN +T+N +I+G C++
Sbjct: 7   KEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRD 66

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              +    +L EM  KG   + ++YN ++ G CK+G 
Sbjct: 67  GRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGN 103



 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 4/137 (2%)

Query: 132 GKLDRMKELFQIM-EKYVSPDACSYNILIHG-CVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
           G +D   ++F+ M  K   P+   YN++IHG C +   L+ A+K++ EMV     P  VT
Sbjct: 397 GLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLK-AYKLYKEMVHVDFVPHTVT 455

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
              L+  L  E    E  ++  DI+R   +  D ++   L++     G + +   +  EM
Sbjct: 456 VLALVKALFTEGMDGELNEVIGDILRSCKL-TDAELSKVLVEINQKEGNMDMVFNLLTEM 514

Query: 250 VRDKIEMDAGIYSSLIS 266
            +D +    G  ++ I+
Sbjct: 515 AKDGLIPSTGTPTNAIA 531


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 169/333 (50%), Gaps = 16/333 (4%)

Query: 16  KDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 75
           +DP +A   F+     P          F++N     +++    +AK  +E  ++L + + 
Sbjct: 54  EDPDVAWTFFQWAGNKPG---------FQHNAYTCAVLLNAFVKAKRHEEAHRLLKE-EL 103

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           +    P EI++  VI  + +A  +++A ++ DEM    V+M V   +TL+      G++D
Sbjct: 104 EPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRID 163

Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR-----LQPTLVTF 190
              E F+ M +  SP+  +YN +++G   + R+++A ++FD+M KR       +P ++++
Sbjct: 164 EALEQFKSMGEECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISY 223

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
            T+I  LC   RVD+A +  +  MR     P+   ++SLI GLC V   S  L +   M 
Sbjct: 224 STVIDALCKAQRVDKAYEYFKR-MRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMK 282

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
                ++   +++++ AL+K   + +     + + + G KPN VTYN  + G CK    +
Sbjct: 283 EKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVD 342

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            A+ IL EM +     + I+Y+ I+ G CK G+
Sbjct: 343 EAYRILLEMVESKVTPDVITYSSIIDGFCKAGR 375



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 158/330 (47%), Gaps = 41/330 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y++ +  L +A   DE  +IL ++  ++++ P  I + ++I  + +A  +++A  +
Sbjct: 324 NVVTYNVAVHGLCKAGRVDEAYRILLEMV-ESKVTPDVITYSSIIDGFCKAGRMDKADDV 382

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHG 161
           F  M           F TLL+      +  + +E F++ E  V+    P   +YN+L+  
Sbjct: 383 FTRMMVHECIPHPVTFMTLLH---GFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDC 439

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              +  +E A +++ +M +++ QP   T+  LI  LC   RVDEA +   D+M   NV P
Sbjct: 440 VCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFL-DVMEADNVVP 498

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMV--------------------RDKIEM----- 256
           +G +  +L++ LC  GE+  A  V + +V                    R K E      
Sbjct: 499 NGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLL 558

Query: 257 -------DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
                  DA  YS  ++ + KAG+ +E   ++++M  +G +P+  TY A++   C  +  
Sbjct: 559 RSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRV 618

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLC 339
           E+A    ++M  +GC    ++Y +++G  C
Sbjct: 619 ESAIAEFEKMASRGCAPGLVTYTLLIGEAC 648



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 145/327 (44%), Gaps = 14/327 (4%)

Query: 21  ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
           AL+LF +         +H  +P   +++ Y  +I  L +A+  D+  +   +++      
Sbjct: 199 ALELFDDMEKRYE--ASHGCEP---DVISYSTVIDALCKAQRVDKAYEYFKRMRA-VGCA 252

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + + ++I    +       L++   M      + +  FN +L+      + ++  + 
Sbjct: 253 PNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQF 312

Query: 141 FQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ +++    P+  +YN+ +HG   + R+++A+++  EMV+ ++ P ++T+ ++I G C 
Sbjct: 313 FERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCK 372

Query: 200 ELRVDEALKLKEDI---MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
             R+D+A    +D+   M V+   P    F +L+ G     +   A  V E+MV      
Sbjct: 373 AGRMDKA----DDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIP 428

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
               Y+ L+  +  A        I  +MK +  +P+  TY  LI   C+    + A   L
Sbjct: 429 GLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFL 488

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
           D M       N    + ++  LCK G+
Sbjct: 489 DVMEADNVVPNGAICHALVEVLCKQGE 515


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 157/300 (52%), Gaps = 6/300 (2%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ + + Y  ++  L  AK +++++++  ++  +   +P E+ F  ++ F+ R  ++ERA
Sbjct: 246 FQPDTVSYTTVLKGLCAAKRWEDVEELFAEM-MEKNCMPNEVTFDMLVRFFCRGGMVERA 304

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
           +Q+ ++MS           N ++N     G++D   +    M  Y  SPD  SY  ++ G
Sbjct: 305 IQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKG 364

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              + R EDA ++  EMV++   P  VTF T I  LC +  +++A  L E  M  +  + 
Sbjct: 365 LCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQ-MSEHGCEV 423

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   + +L+ G C  G +  AL +   M     + +   Y++L++ L  A R +    +L
Sbjct: 424 NIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAELL 480

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM ++ C PN VT+N L+S FC++   + A  ++++M + GC  N I+YN +L G+ KD
Sbjct: 481 AEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKD 540



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 139/306 (45%), Gaps = 6/306 (1%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           P+ P  Y    Y  II  L       E   +L  + H     P  + +  ++    ++  
Sbjct: 140 PVAPDAYT---YTPIIRGLCDRGRVGEALSLLDDMLHRG-CQPSVVTYTVLLEAVCKSTG 195

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
             +A+++ DEM +      +  +N ++N     G++D  +E    +  Y   PD  SY  
Sbjct: 196 FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTT 255

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           ++ G   ++R ED  ++F EM+++   P  VTF  L+   C    V+ A+++ E  M  +
Sbjct: 256 VLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQ-MSGH 314

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
               +  +   +I  +C  G +  A      M       D   Y++++  L +A R  + 
Sbjct: 315 GCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDA 374

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +LKEM  + C PN VT+N  I   C++   E A  ++++M + GC+ N ++YN ++ G
Sbjct: 375 KELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNG 434

Query: 338 LCKDGK 343
            C  G+
Sbjct: 435 FCVQGR 440



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 144/296 (48%), Gaps = 4/296 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           + + Y  ++  L RA+ +++ +++L ++       P E+ F   I    +  L+E+A  +
Sbjct: 354 DTISYTTVLKGLCRAERWEDAKELLKEMVRKN-CPPNEVTFNTFICILCQKGLIEQATML 412

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
            ++MS    ++ +  +N L+N     G++D   ELF  M     P+  +Y  L+ G   +
Sbjct: 413 IEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP--CKPNTITYTTLLTGLCNA 470

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            RL+ A ++  EM+++   P +VTF  L+   C +  +DEA++L E +M  +   P+   
Sbjct: 471 ERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMME-HGCTPNLIT 529

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + +L+ G+        AL +   +V + +  D   YSS+I  L +  R  E   +   ++
Sbjct: 530 YNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQ 589

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           + G +P +V YN ++   CK  + + A      M   GC  N ++Y  ++ GL  +
Sbjct: 590 DLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANE 645



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 3/223 (1%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           +NTL+      G+LD  + L   M   V+PDA +Y  +I G     R+ +A  + D+M+ 
Sbjct: 116 YNTLVAGYCRYGQLDAARRLIASMP--VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLH 173

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           R  QP++VT+  L+  +C      +A+++ ++ MR     P+   +  +I G+C  G + 
Sbjct: 174 RGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDE-MRAKGCTPNIVTYNVIINGMCREGRVD 232

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A      +     + D   Y++++  L  A R  +   +  EM E+ C PN VT++ L+
Sbjct: 233 DAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLV 292

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             FC+    E A  +L++M   GC AN    N+++  +CK G+
Sbjct: 293 RFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGR 335



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 144/296 (48%), Gaps = 6/296 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y +++  + ++  F +  ++L +++      P  + +  +I    R   ++ A + 
Sbjct: 179 SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKG-CTPNIVTYNVIINGMCREGRVDDAREF 237

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            + +SS+  Q     + T+L       + + ++ELF ++MEK   P+  ++++L+     
Sbjct: 238 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCR 297

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +E A +V ++M              +I  +C + RVD+A +   + M  Y   PD  
Sbjct: 298 GGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNN-MGSYGCSPDTI 356

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +++KGLC       A  + +EMVR     +   +++ I  L + G   +   ++++M
Sbjct: 357 SYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQM 416

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            E GC+ N VTYNAL++GFC +   ++A  +   M    CK N I+Y  +L GLC 
Sbjct: 417 SEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCN 469



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 4/176 (2%)

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           L +A ++ D    R   P +     LI  LC   R  +A ++     R      D   + 
Sbjct: 59  LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAER-SGTAVDVFAYN 117

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +L+ G C  G+L  A  +   M    +  DA  Y+ +I  L   GR  E  ++L +M  R
Sbjct: 118 TLVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHR 174

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           GC+P+ VTY  L+   CK   F  A  +LDEM  KGC  N ++YNVI+ G+C++G+
Sbjct: 175 GCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGR 230



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 99/209 (47%), Gaps = 8/209 (3%)

Query: 135 DRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           D + E  +++++  S    PD      LI       R  DA +V     +      +  +
Sbjct: 57  DDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAY 116

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
            TL+ G C   ++D A +L   +     V PD   +  +I+GLC  G +  AL + ++M+
Sbjct: 117 NTLVAGYCRYGQLDAARRLIASM----PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDML 172

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
               +     Y+ L+ A+ K+    +   +L EM+ +GC PN VTYN +I+G C+E   +
Sbjct: 173 HRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 232

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLC 339
            A   L+ +   G + + +SY  +L GLC
Sbjct: 233 DAREFLNRLSSYGFQPDTVSYTTVLKGLC 261


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 162/312 (51%), Gaps = 8/312 (2%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           E+HP    R +    + ++  L  AK  D  ++         R+ P    F  VI    R
Sbjct: 147 ESHPR--HRPSTSSVNALLAGLVGAKRVDLAEKAFRSALR-RRVSPDIYTFNTVISGLCR 203

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE----LFQIMEKYVSPD 151
              L +A  +  ++ ++ +  +V  +N+L++     G    M      L +++E  +SP 
Sbjct: 204 IGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPT 263

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
           A ++ +LI+G   +     A +VF+EM ++ +  ++VT+ +LI GLC E +V+E +KL E
Sbjct: 264 AVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLME 323

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           + M    + P+   F  ++KG C  G ++ A    + M    +E D  IY+ LI    + 
Sbjct: 324 E-MEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRL 382

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G+  +  A+ + M ++G  PN  TYN LI+GF +  D+ +A  +LDEM +KG +A+ ++Y
Sbjct: 383 GKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTY 442

Query: 332 NVILGGLCKDGK 343
           NV++G LC  G+
Sbjct: 443 NVLIGALCCKGE 454



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 155/313 (49%), Gaps = 7/313 (2%)

Query: 34  DTEAHPLKP--FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIG 91
           D +A  L P    YN L  D    K G   M+  +  +L ++  +  I P  + F  +I 
Sbjct: 216 DIKAWGLAPSVATYNSL-IDGYCKKGGAGNMY-HVDMLLKEMV-EAGISPTAVTFGVLIN 272

Query: 92  FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSP 150
            Y +      A+++F+EM    +  +V  +N+L++   + GK++   +L + ME   +SP
Sbjct: 273 GYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSP 332

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           +  ++  ++ G      + DA    D M +R ++P +V +  LI G     ++++A+ +K
Sbjct: 333 NEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVK 392

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
           E + +   + P+   +  LI G    G+   A G+ +EM    IE D   Y+ LI AL  
Sbjct: 393 EAMAK-KGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCC 451

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            G   +   +L EM E G +PN +TYN +I GFC + + ++A+ I   M     +AN ++
Sbjct: 452 KGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVT 511

Query: 331 YNVILGGLCKDGK 343
           YNV +   C+ GK
Sbjct: 512 YNVFIKYFCQIGK 524


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 158/300 (52%), Gaps = 7/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ +  +I    R    D     L +++    +VP  +I+  VIG + RA L+  AL++
Sbjct: 234 DLVSFSCLIGLFARRGKMDHAMAYLREMRC-FGLVPDGVIYTMVIGGFCRAGLMSDALRV 292

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGK---LDRMKELFQIMEKYVSPDACSYNILIHGC 162
            DEM        V  +NTLLN    C +   LD    L ++ E+ V PD C++  LIHG 
Sbjct: 293 RDEMVGCGCLPDVVTYNTLLNG--LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGY 350

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
            +  +L+ A ++FD M+ +RL+P +VT+ TLI G+C +  +D+A  L +D M    + P+
Sbjct: 351 CIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDD-MHSREIFPN 409

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              ++ LI   C  G++  A G  +EM+   I  +   Y+S+I    ++G  ++    L+
Sbjct: 410 HVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQ 469

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +M      P+ +TYN LI G+ KE+    AF +L+ M  +  + + ++YN+++ G    G
Sbjct: 470 KMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHG 529



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 157/304 (51%), Gaps = 6/304 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP    ++ Y+ ++  L R+ M+D+  ++  ++  D  + P    F  +IG + R   +
Sbjct: 161 LKP---GIVTYNSVLKGLCRSGMWDKAWEVFKEMD-DFGVAPDVRSFTILIGGFCRVGEI 216

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
           E AL+++ EM    ++  +  F+ L+      GK+D      + M  + + PD   Y ++
Sbjct: 217 EEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMV 276

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   +  + DA +V DEMV     P +VT+ TL+ GLC E R+ +A  L  + MR   
Sbjct: 277 IGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNE-MRERG 335

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V PD   F +LI G C  G+L  AL + + M+  ++  D   Y++LI  + + G  ++  
Sbjct: 336 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAN 395

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +  +M  R   PN VTY+ LI   C++   E AF  LDEM +KG   N ++YN I+ G 
Sbjct: 396 DLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGY 455

Query: 339 CKDG 342
           C+ G
Sbjct: 456 CRSG 459



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 161/300 (53%), Gaps = 7/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNV-IGFYGRARLLERALQ 104
           N    ++++    +A  FD++  ++ ++  + R V  +++  NV +    RA   E A+ 
Sbjct: 94  NTYTLNIMVHNYCKALEFDKVDAVISEM--EKRCVFPDVVTHNVMVDARFRAGDAEAAMA 151

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV 163
           + D M S  ++  +  +N++L      G  D+  E+F+ M+ + V+PD  S+ ILI G  
Sbjct: 152 LVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFC 211

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDIMRVYNVKPD 222
               +E+A K++ EM  R ++P LV+F  LI       ++D A+  L+E  MR + + PD
Sbjct: 212 RVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLRE--MRCFGLVPD 269

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
           G ++  +I G C  G +S AL V++EMV      D   Y++L++ L K  R  +   +L 
Sbjct: 270 GVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLN 329

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           EM+ERG  P+  T+  LI G+C E   + A  + D M ++  + + ++YN ++ G+C+ G
Sbjct: 330 EMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQG 389



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 146/280 (52%), Gaps = 5/280 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI-IFCNVIGFYGRARLLERALQ 104
           +++ Y+ ++  L + +   + + +L++++   R VP ++  F  +I  Y     L++ALQ
Sbjct: 304 DVVTYNTLLNGLCKERRLLDAEGLLNEMRE--RGVPPDLCTFTTLIHGYCIEGKLDKALQ 361

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
           +FD M +  ++  +  +NTL++     G LD+  +L+  M  + + P+  +Y+ILI    
Sbjct: 362 LFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHC 421

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              ++EDA+   DEM+ + + P ++T+ ++I G C    V +  K  + +M V  V PD 
Sbjct: 422 EKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMM-VNKVSPDL 480

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +LI G     ++  A  +   M ++K++ D   Y+ LI+     G   E   I ++
Sbjct: 481 ITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEK 540

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           M  +G +P+  TY ++I+G     + + AF + DEM  +G
Sbjct: 541 MCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 580



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 2/252 (0%)

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPD 151
           Y +A   ++   +  EM    V   V   N +++ +   G  +    L   M  K + P 
Sbjct: 105 YCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPG 164

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +YN ++ G   S   + AW+VF EM    + P + +F  LI G C    ++EALK+ +
Sbjct: 165 IVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYK 224

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           + MR   +KPD   F+ LI      G++  A+    EM    +  D  IY+ +I    +A
Sbjct: 225 E-MRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRA 283

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G  ++   +  EM   GC P+ VTYN L++G CKE     A  +L+EM ++G   +  ++
Sbjct: 284 GLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTF 343

Query: 332 NVILGGLCKDGK 343
             ++ G C +GK
Sbjct: 344 TTLIHGYCIEGK 355



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 58/115 (50%)

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           ++   C   E      V  EM +  +  D   ++ ++ A F+AG      A++  M  +G
Sbjct: 101 MVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKG 160

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            KP  VTYN+++ G C+   ++ A+ +  EM D G   +  S+ +++GG C+ G+
Sbjct: 161 LKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGE 215


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 169/323 (52%), Gaps = 13/323 (4%)

Query: 21  ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
           AL LFK       + E   ++P   N++ Y  +I+ L     + +  Q+L  +  + +I 
Sbjct: 279 ALNLFK-------EMETKGIRP---NVVTYSSLISCLCSYGRWSDASQLLSDMI-EKKIN 327

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  +I  + +      A +++D+M   ++   +  +N+L+N      +LD+ K++
Sbjct: 328 PNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQM 387

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ M  K   PD  +YN LI G   S+R+ED  ++F EM  R L    VT+ TLI GL  
Sbjct: 388 FEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 447

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +   D A K+ +  M    V PD   ++ L+ GLC  G+L  AL V + M + +I++D  
Sbjct: 448 DGDCDNAQKVFKQ-MVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIY 506

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           IY+++I  + KAG+ ++   +   +  +G KPN VTYN +ISG C +   + A+ +L +M
Sbjct: 507 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 566

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
            + G   N  +YN ++    +DG
Sbjct: 567 KEDGPLPNSGTYNTLIRAHLRDG 589



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 149/299 (49%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ Y +++  L +    D    +L++++   +I    +IF  +I    + R ++ AL +
Sbjct: 224 NLVTYGVVVNGLCKRGDTDLALNLLNKMEA-AKIEADVVIFNTIIDSLCKYRHVDDALNL 282

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F EM +  ++  V  +++L++   + G+     +L   M EK ++P+  ++N LI   V 
Sbjct: 283 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 342

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +  +A K++D+M+KR + P + T+ +L+ G C+  R+D+A ++ E  M   +  PD  
Sbjct: 343 EGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFE-FMVSKDCFPDVV 401

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LIKG C    +     +  EM    +  D   Y++LI  LF  G  +    + K+M
Sbjct: 402 TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM 461

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  P+ +TY+ L+ G C     E A  + D M     K +   Y  ++ G+CK GK
Sbjct: 462 VSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 520



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 154/330 (46%), Gaps = 36/330 (10%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ ++ +++ + + K FD +  +  +++    IV     +  +I  + R   +  AL +
Sbjct: 84  SIVEFNKLLSAIAKMKKFDVVISLGEKMQR-LEIVHGLYTYNILINCFCRRSQISLALAL 142

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
             +M     + ++   ++LLN      ++ D +  + Q++E    PD  ++  LIHG  +
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD---------EALKLKEDI-- 213
             +  +A  + D MV+R  QP LVT+G ++ GLC     D         EA K++ D+  
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262

Query: 214 -----------------------MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
                                  M    ++P+   ++SLI  LC+ G  S A  +  +M+
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
             KI  +   +++LI A  K G+  E   +  +M +R   P+  TYN+L++GFC  +  +
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 382

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCK 340
            A  + + M  K C  + ++YN ++ G CK
Sbjct: 383 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCK 412



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 138/268 (51%), Gaps = 2/268 (0%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD- 135
           +R +P  + F  ++    + +  +  + + ++M    +   +  +N L+N      ++  
Sbjct: 79  SRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISL 138

Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
            +  L ++M+    P   + + L++G    +R+ DA  + D+MV+   +P  +TF TLI+
Sbjct: 139 ALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 198

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           GL L  +  EA+ L  D M     +P+   +  ++ GLC  G+  LAL +  +M   KIE
Sbjct: 199 GLFLHNKASEAVALV-DRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIE 257

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D  I++++I +L K    ++   + KEM+ +G +PN VTY++LIS  C    +  A  +
Sbjct: 258 ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQL 317

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
           L +M +K    N +++N ++    K+GK
Sbjct: 318 LSDMIEKKINPNLVTFNALIDAFVKEGK 345



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 123/270 (45%), Gaps = 20/270 (7%)

Query: 72  QLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131
           Q K + RI P  I  C +  ++GRA         F   S          +  +L   L  
Sbjct: 22  QGKGNPRIAPSSIDLCGMC-YWGRA---------FSSGSGD--------YREILRNGLHD 63

Query: 132 GKLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
            KLD    LF  M K    P    +N L+      ++ +    + ++M +  +   L T+
Sbjct: 64  MKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTY 123

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
             LI   C   ++  AL L   +M++   +P     +SL+ G C    +S A+ + ++MV
Sbjct: 124 NILINCFCRRSQISLALALLGKMMKL-GYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 182

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
                 D   +++LI  LF   + +E  A++  M +RGC+PN VTY  +++G CK  D +
Sbjct: 183 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTD 242

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCK 340
            A  +L++M     +A+ + +N I+  LCK
Sbjct: 243 LALNLLNKMEAAKIEADVVIFNTIIDSLCK 272



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 108/211 (51%), Gaps = 4/211 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  +I  + +++ +E   ++F EMS   +      + TL+      G  D  +++
Sbjct: 398 PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 457

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F Q++   V PD  +Y+IL+ G   + +LE A +VFD M K  ++  +  + T+I G+C 
Sbjct: 458 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 517

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             +VD+   L    + +  VKP+   + ++I GLC+   L  A  + ++M  D    ++G
Sbjct: 518 AGKVDDGWDLFCS-LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSG 576

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCK 290
            Y++LI A  + G K     +++EM  R C+
Sbjct: 577 TYNTLIRAHLRDGDKAASAELIREM--RSCR 605


>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 472

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 168/344 (48%), Gaps = 14/344 (4%)

Query: 2   PTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAK 61
           P+  I+L    R +KD + ++ +F +      +   H    F Y       ++++L  A 
Sbjct: 16  PSQVIKLM---RAEKDVEKSIAVFDSATAEYANGYLHDQSSFGY-------MVSRLVSAN 65

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
            F   + I+ ++K +  +V ++I+     G YGR      +L++F +M  F+   + K +
Sbjct: 66  KFKAAEDIVARMKIENCVVSEDILLSICRG-YGRVHRPFDSLRVFHKMKDFDCDPSQKAY 124

Query: 122 NTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG-CVVSRRLEDAWKVFDEMV 179
            T+L   +   +L+   + ++ M E  + P   S N+LI   C     ++   K+F EM 
Sbjct: 125 VTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFHEMP 184

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           KR   P   T+GTLI GLC   R+DEA KL  +++   +  P    + SLI GLC    +
Sbjct: 185 KRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVE-KDCAPTVVTYTSLINGLCGSKNV 243

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A+   EEM    IE +   YSSL+  L K GR  +   + + M  RGC+PN VTY  L
Sbjct: 244 DEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTL 303

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I+G CKE+  + A  +LD M  +G K +   Y  ++ G C   K
Sbjct: 304 ITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAVSK 347


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 158/300 (52%), Gaps = 7/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ +  +I    R    D     L +++    +VP  +I+  VIG + RA L+  AL++
Sbjct: 295 DLVSFSCLIGLFARRGKMDHAMAYLREMRC-FGLVPDGVIYTMVIGGFCRAGLMSDALRV 353

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGK---LDRMKELFQIMEKYVSPDACSYNILIHGC 162
            DEM        V  +NTLLN    C +   LD    L ++ E+ V PD C++  LIHG 
Sbjct: 354 RDEMVGCGCLPDVVTYNTLLNG--LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGY 411

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
            +  +L+ A ++FD M+ +RL+P +VT+ TLI G+C +  +D+A  L +D M    + P+
Sbjct: 412 CIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDD-MHSREIFPN 470

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              ++ LI   C  G++  A G  +EM+   I  +   Y+S+I    ++G  ++    L+
Sbjct: 471 HVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQ 530

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +M      P+ +TYN LI G+ KE+    AF +L+ M  +  + + ++YN+++ G    G
Sbjct: 531 KMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHG 590



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 157/304 (51%), Gaps = 6/304 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP    ++ Y+ ++  L R+ M+D+  ++  ++  D  + P    F  +IG + R   +
Sbjct: 222 LKP---GIVTYNSVLKGLCRSGMWDKAWEVFKEMD-DFGVAPDVRSFTILIGGFCRVGEI 277

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
           E AL+++ EM    ++  +  F+ L+      GK+D      + M  + + PD   Y ++
Sbjct: 278 EEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMV 337

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   +  + DA +V DEMV     P +VT+ TL+ GLC E R+ +A  L  + MR   
Sbjct: 338 IGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNE-MRERG 396

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V PD   F +LI G C  G+L  AL + + M+  ++  D   Y++LI  + + G  ++  
Sbjct: 397 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAN 456

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +  +M  R   PN VTY+ LI   C++   E AF  LDEM +KG   N ++YN I+ G 
Sbjct: 457 DLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGY 516

Query: 339 CKDG 342
           C+ G
Sbjct: 517 CRSG 520



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 161/300 (53%), Gaps = 7/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNV-IGFYGRARLLERALQ 104
           N    ++++    +A  FD++  ++ ++  + R V  +++  NV +    RA   E A+ 
Sbjct: 155 NTYTLNIMVHNYCKALEFDKVDAVISEM--EKRCVFPDVVTHNVMVDARFRAGDAEAAMA 212

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV 163
           + D M S  ++  +  +N++L      G  D+  E+F+ M+ + V+PD  S+ ILI G  
Sbjct: 213 LVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFC 272

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDIMRVYNVKPD 222
               +E+A K++ EM  R ++P LV+F  LI       ++D A+  L+E  MR + + PD
Sbjct: 273 RVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLRE--MRCFGLVPD 330

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
           G ++  +I G C  G +S AL V++EMV      D   Y++L++ L K  R  +   +L 
Sbjct: 331 GVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLN 390

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           EM+ERG  P+  T+  LI G+C E   + A  + D M ++  + + ++YN ++ G+C+ G
Sbjct: 391 EMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQG 450



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 146/280 (52%), Gaps = 5/280 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI-IFCNVIGFYGRARLLERALQ 104
           +++ Y+ ++  L + +   + + +L++++   R VP ++  F  +I  Y     L++ALQ
Sbjct: 365 DVVTYNTLLNGLCKERRLLDAEGLLNEMRE--RGVPPDLCTFTTLIHGYCIEGKLDKALQ 422

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
           +FD M +  ++  +  +NTL++     G LD+  +L+  M  + + P+  +Y+ILI    
Sbjct: 423 LFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHC 482

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              ++EDA+   DEM+ + + P ++T+ ++I G C    V +  K  + +M V  V PD 
Sbjct: 483 EKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMM-VNKVSPDL 541

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +LI G     ++  A  +   M ++K++ D   Y+ LI+     G   E   I ++
Sbjct: 542 ITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEK 601

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           M  +G +P+  TY ++I+G     + + AF + DEM  +G
Sbjct: 602 MCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 641



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 2/252 (0%)

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPD 151
           Y +A   ++   +  EM    V   V   N +++ +   G  +    L   M  K + P 
Sbjct: 166 YCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPG 225

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +YN ++ G   S   + AW+VF EM    + P + +F  LI G C    ++EALK+ +
Sbjct: 226 IVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYK 285

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           + MR   +KPD   F+ LI      G++  A+    EM    +  D  IY+ +I    +A
Sbjct: 286 E-MRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRA 344

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G  ++   +  EM   GC P+ VTYN L++G CKE     A  +L+EM ++G   +  ++
Sbjct: 345 GLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTF 404

Query: 332 NVILGGLCKDGK 343
             ++ G C +GK
Sbjct: 405 TTLIHGYCIEGK 416



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 58/115 (50%)

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           ++   C   E      V  EM +  +  D   ++ ++ A F+AG      A++  M  +G
Sbjct: 162 MVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKG 221

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            KP  VTYN+++ G C+   ++ A+ +  EM D G   +  S+ +++GG C+ G+
Sbjct: 222 LKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGE 276



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 49/88 (55%)

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           E++    + ++    KA   ++  A++ EM++R   P+ VT+N ++    +  D EAA  
Sbjct: 153 EVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMA 212

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++D M  KG K   ++YN +L GLC+ G
Sbjct: 213 LVDSMVSKGLKPGIVTYNSVLKGLCRSG 240


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 169/364 (46%), Gaps = 42/364 (11%)

Query: 11  LPRLQKDPKLALQL-FKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 69
           L RL+ D  L+  L F +   N N         F++    Y ++I +LGR    D +Q I
Sbjct: 45  LKRLKTDRNLSSVLGFFSAIANSN--------AFQHTASTYRVMIERLGRECEMDMVQYI 96

Query: 70  LHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL 129
           L Q+K D     +++  C +I  Y R    E+AL+MF  +  F  + TV+ +N LL+  L
Sbjct: 97  LQQMKMDGINCCEDLFIC-IINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALL 155

Query: 130 TCGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR------- 181
           +  K   +  L+  M+K  + P+  +YNIL+     + R++ A K+F EM  +       
Sbjct: 156 SENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAV 215

Query: 182 -----------------------RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
                                  R +P++  +  LI G+C E R++ A+KL  ++M    
Sbjct: 216 TYTTMVSSLCKAGKIDDARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMD-NG 274

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V P+   ++ +I  LC  G + LA  +  +M     + +   ++ LI   F  G+  E  
Sbjct: 275 VDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEAL 334

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            + K M + GC+PN V YN LI G C     E A  + D+M   GC  N  +Y++++ G 
Sbjct: 335 DLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGF 394

Query: 339 CKDG 342
            K G
Sbjct: 395 AKSG 398



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 137/290 (47%), Gaps = 8/290 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +++ L +A   D+ +++  + K      P   ++  +I    +   +E A+++  EM
Sbjct: 217 YTTMVSSLCKAGKIDDARELAGRFK------PSVPVYNALIDGMCKEGRIEVAIKLLGEM 270

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
               V   V  ++ ++N     G ++    LF Q+  +    +  ++  LI GC +  +L
Sbjct: 271 MDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKL 330

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A  ++  M++   +P +V + TLI+GLC    ++EAL++ + + R     P+   ++ 
Sbjct: 331 YEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRS-GCLPNVTTYSI 389

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G    G+L  A      M+      +   Y+ ++  L K    ++  +++++M   G
Sbjct: 390 LIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEG 449

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           C PN++T+N  I G C     E A  +L+ M   GC  N  +YN +L  L
Sbjct: 450 CTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDAL 499



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 123/254 (48%), Gaps = 3/254 (1%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VS 149
           G + R +L E AL ++  M     +  V  +NTL++   + G L+   ++   M++    
Sbjct: 323 GCFMRGKLYE-ALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCL 381

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P+  +Y+ILI G   S  L  A + ++ M+    +P +VT+  ++  LC     D+A  L
Sbjct: 382 PNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSL 441

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            E  M +    P+   F + IKGLC  G +  A+ + E M       +   Y+ L+ ALF
Sbjct: 442 VEK-MTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALF 500

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           +  +  E   + +E++ R  +PN VTYN ++ GF +      A  +  +   +G   + I
Sbjct: 501 RMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSI 560

Query: 330 SYNVILGGLCKDGK 343
           +YN ++   CK GK
Sbjct: 561 TYNTMIHAYCKQGK 574



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 119/270 (44%), Gaps = 6/270 (2%)

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           D  + P  + +  +I     +  +E A  +F +M        +  F  L+      GKL 
Sbjct: 272 DNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLY 331

Query: 136 RMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
              +L+++M +    P+  +YN LIHG   +  LE+A +V D+M +    P + T+  LI
Sbjct: 332 EALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILI 391

Query: 195 YGLCLELRVDEALKLKEDIMRV--YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
            G     +  + +   E   R+  +  +P+   +  ++  LC       A  + E+M  +
Sbjct: 392 DGFA---KSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLE 448

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
               +   +++ I  L   GR      +L+ M+  GC PN  TYN L+    +   +E A
Sbjct: 449 GCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEA 508

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDG 342
           F +  E+  +  + N ++YN +L G  + G
Sbjct: 509 FGLFQEIEARNLQPNLVTYNTVLYGFSRAG 538



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 106/229 (46%), Gaps = 10/229 (4%)

Query: 104 QMFDEMSSFNVQMTVK-------FFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSY 155
            MFD+ +S   +MT++        FNT +      G+++   +L + M+ +   P+  +Y
Sbjct: 433 SMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTY 492

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N L+       + E+A+ +F E+  R LQP LVT+ T++YG      + EAL+L    + 
Sbjct: 493 NELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKAL- 551

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK-IEMDAGIYSSLISALFKAGRK 274
           V    PD   + ++I   C  G++ +A  + E +   K    D   Y+SLI         
Sbjct: 552 VRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNI 611

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
            E  A L +   +G  PN  T+NAL+  F           ILD++  KG
Sbjct: 612 EEAMAFLDKAINQGICPNFATWNALVRCFFDSLGHMGPIHILDDILRKG 660



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 111/237 (46%), Gaps = 7/237 (2%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGR 95
           +H  +P   N++ Y  ++  L +  MFD+   ++ ++  +    P  I F   I G  G 
Sbjct: 412 SHGCRP---NVVTYTCMVDVLCKNSMFDQANSLVEKMTLEG-CTPNTITFNTFIKGLCGN 467

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACS 154
            R+ E A+++ + M        +  +N LL+      K +    LFQ +E + + P+  +
Sbjct: 468 GRV-EWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVT 526

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YN +++G   +  + +A ++F + + R   P  +T+ T+I+  C + +V  A +L E + 
Sbjct: 527 YNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVS 586

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            +    PD   + SLI G C    +  A+   ++ +   I  +   +++L+   F +
Sbjct: 587 SMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDS 643



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 133/294 (45%), Gaps = 8/294 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ +I  L      +E  Q+  Q++  +  +P    +  +I  + ++  L  A + 
Sbjct: 348 NVVAYNTLIHGLCSNGSLEEALQVCDQMQR-SGCLPNVTTYSILIDGFAKSGDLVGASET 406

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           ++ M S   +  V  +  +++        D+   L + M  +  +P+  ++N  I G   
Sbjct: 407 WNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCG 466

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R+E A K+ + M      P + T+  L+  L    + +EA  L ++I    N++P+  
Sbjct: 467 NGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEI-EARNLQPNLV 525

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR---KNEFPAIL 281
            + +++ G    G +  AL +  + +      D+  Y+++I A  K G+     +    +
Sbjct: 526 TYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERV 585

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
             MKE    P+ +TY +LI G C   + E A   LD+  ++G   N  ++N ++
Sbjct: 586 SSMKEW--HPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALV 637



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 2/179 (1%)

Query: 166 RRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           R L      F  +      Q T  T+  +I  L  E  +D    + +  M++  +     
Sbjct: 52  RNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQ-MKMDGINCCED 110

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           +F  +I G   VG    AL +   +     +    IY+ L+ AL    +      +   M
Sbjct: 111 LFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNM 170

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           K+ G  PN  TYN L+   CK +  +AA  +  EM +KGC  + ++Y  ++  LCK GK
Sbjct: 171 KKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGK 229


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 162/302 (53%), Gaps = 6/302 (1%)

Query: 46  NLLHYDLIIT---KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           N++ Y+ +I    K+GR     +   IL ++     I P E+ +  +I  + +   +  A
Sbjct: 189 NVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKG-ICPNEVTYNILIDGFCKDENVSGA 247

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
           +++F EM    ++  V  +N L+N   + GK+D    L  Q++   + P+  ++N+LI+G
Sbjct: 248 MRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLING 307

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              ++ + +A  +F++M K+ + P  +T+ TLI   C + R+++A  L  ++M    + P
Sbjct: 308 FCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALY-NMMIDRGIFP 366

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   +  LI GLC  G++  A  +  EMV  K+  D   Y+ LI +L K G   +   +L
Sbjct: 367 EVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLL 426

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM E+G  P+ VTYN L+ G+C+E +  AA  +   M  KG +AN +++NV++ G C  
Sbjct: 427 DEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLK 486

Query: 342 GK 343
           G+
Sbjct: 487 GR 488



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 130/260 (50%), Gaps = 8/260 (3%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKY 147
           V+ F    ++L R  + F     +  ++++   N LL+  +   +   M+ ++ +++++ 
Sbjct: 92  VLAFVRNLKIL-RGFEAFKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYREMIKRK 150

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           +  +  S+NI+++G     +L  A  V ++M    + P ++T+ TLI G C   R+ +  
Sbjct: 151 IELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMY 210

Query: 208 K----LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
           K    LKE  M    + P+   +  LI G C    +S A+ V  EM R  +  +   Y+ 
Sbjct: 211 KADAILKE--MVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNI 268

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LI+ L   G+ +E  A+  +M     +PN VT+N LI+GFCK +    A  + ++M  +G
Sbjct: 269 LINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQG 328

Query: 324 CKANPISYNVILGGLCKDGK 343
              N ++Y  ++   CKDG+
Sbjct: 329 VDPNAMTYTTLIDAYCKDGR 348


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 157/300 (52%), Gaps = 6/300 (2%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ +++ Y  ++  L  A+ +D+++ +  ++  D + VP E+ F  ++ F+ R  ++ERA
Sbjct: 253 FQPDIVSYTTVLKGLCAARRWDDVKVLFAEMV-DKKCVPNEVTFDMLVRFFCRGGMVERA 311

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
           +Q+  +MS           N ++N     G++D   +    M  Y  +PD  SY  ++ G
Sbjct: 312 IQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRG 371

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              + R E A ++  EMV++   P  VTF T I  LC +  +++A+KL E +M  Y    
Sbjct: 372 LCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIE-LMPEYGCSV 430

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
               + +L+ G C  G +  AL +   +     E +   Y++L++ L  A R +    +L
Sbjct: 431 GIVTYNALVHGFCVQGRVDSALELFNNL---PCEPNTITYTTLLTGLCHAERLDAAAELL 487

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM ++ C  N+VT+N L+S FC++   E A  ++++M + GC  N I++N +L G+ KD
Sbjct: 488 AEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKD 547



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 2/243 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIH 160
           A+ + DEM +      +  +N ++N     G++D  KE+   +  Y   PD  SY  ++ 
Sbjct: 206 AMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLK 265

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G   +RR +D   +F EMV ++  P  VTF  L+   C    V+ A+++ +  M  +   
Sbjct: 266 GLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQ-MSQHGCT 324

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+  +   +I  +C  G +  A      M       D   Y++++  L +AGR      +
Sbjct: 325 PNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKEL 384

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L EM  + C PN VT+N  I   C++   E A  +++ M + GC    ++YN ++ G C 
Sbjct: 385 LPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCV 444

Query: 341 DGK 343
            G+
Sbjct: 445 QGR 447



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 5/203 (2%)

Query: 143 IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR 202
           ++++   P   +Y +L+     S    +A  V DEM  +   P +VT+  +I G+C E R
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGR 237

Query: 203 VDEALKLKEDIMRV--YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
           VD+A   KE + R+  Y  +PD   + +++KGLCA         +  EMV  K   +   
Sbjct: 238 VDDA---KEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVT 294

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
           +  L+    + G       +L++M + GC PN+   N +I+  CK+   + A+  L+ MG
Sbjct: 295 FDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMG 354

Query: 321 DKGCKANPISYNVILGGLCKDGK 343
             GC  + ISY  +L GLC+ G+
Sbjct: 355 MYGCNPDTISYTTVLRGLCRAGR 377



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 139/297 (46%), Gaps = 4/297 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           + + Y  ++  L RA  ++  +++L ++       P E+ F   I    +  L+E+A+++
Sbjct: 361 DTISYTTVLRGLCRAGRWEHAKELLPEMVRK-NCPPNEVTFNTFICILCQKGLIEQAIKL 419

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
            + M  +   + +  +N L++     G++D   ELF  +     P+  +Y  L+ G   +
Sbjct: 420 IELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP--CEPNTITYTTLLTGLCHA 477

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            RL+ A ++  EM+++      VTF  L+   C +  V+EA++L   +M  +   P+   
Sbjct: 478 ERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMME-HGCTPNLIT 536

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F +L+ G+        AL +   +V   + +D   YSS++  L +  R  E   +L  ++
Sbjct: 537 FNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQ 596

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + G +P    YN ++   CK  + + A      M   GC  N  +Y +++ GL  +G
Sbjct: 597 DMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEG 653



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 109/208 (52%), Gaps = 1/208 (0%)

Query: 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           + M  L ++  K  +P+  +YN++I+G     R++DA ++ + +     QP +V++ T++
Sbjct: 205 EAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVL 264

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
            GLC   R D+   L  +++    V P+   F  L++  C  G +  A+ V ++M +   
Sbjct: 265 KGLCAARRWDDVKVLFAEMVDKKCV-PNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGC 323

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
             +  + + +I+A+ K GR ++    L  M   GC P++++Y  ++ G C+   +E A  
Sbjct: 324 TPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKE 383

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDG 342
           +L EM  K C  N +++N  +  LC+ G
Sbjct: 384 LLPEMVRKNCPPNEVTFNTFICILCQKG 411



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 55/109 (50%)

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
            G  A  E S        M++   +     Y+ L+ A+ K+    E   +L EM+ +GC 
Sbjct: 160 SGASATAEGSATRSPCSTMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCT 219

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           PN VTYN +I+G C+E   + A  IL+ +   G + + +SY  +L GLC
Sbjct: 220 PNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLC 268


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 169/364 (46%), Gaps = 42/364 (11%)

Query: 11  LPRLQKDPKLALQL-FKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 69
           L RL+ D  L+  L F +   N N         F++    Y ++I +LGR    D +Q I
Sbjct: 45  LKRLKTDRNLSSVLGFFSAIANSN--------AFQHTASTYRVMIERLGRECEMDMVQYI 96

Query: 70  LHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL 129
           L Q+K D     +++  C +I  Y R    E+AL+MF  +  F  + TV+ +N LL+  L
Sbjct: 97  LQQMKMDGINCCEDLFIC-IINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALL 155

Query: 130 TCGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR------- 181
           +  K   +  L+  M+K  + P+  +YNIL+     + R++ A K+F EM  +       
Sbjct: 156 SENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAV 215

Query: 182 -----------------------RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
                                  R +P++  +  LI G+C E R++ A+KL  ++M    
Sbjct: 216 TYTTMVSSLCKAGKIDDARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMD-NG 274

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V P+   ++ +I  LC  G + LA  +  +M     + +   ++ LI   F  G+  E  
Sbjct: 275 VDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEAL 334

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            + K M + GC+PN V YN LI G C     E A  + D+M   GC  N  +Y++++ G 
Sbjct: 335 DLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGF 394

Query: 339 CKDG 342
            K G
Sbjct: 395 AKSG 398



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 123/254 (48%), Gaps = 3/254 (1%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VS 149
           G + R +L E AL ++  M     +  V  +NTL++   + G L+   ++   M++    
Sbjct: 323 GCFMRGKLYE-ALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCL 381

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P+  +Y+ILI G   S  L  A + ++ M+    +P +VT+  ++  LC     D+A  L
Sbjct: 382 PNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSL 441

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            E  M +    P+   F + IKGLC  G +  A+ + E M       +   Y+ L+ ALF
Sbjct: 442 VEK-MTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALF 500

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           +  +  E   + +E++ R  +PN VTYN ++ GF +      A  +  +   +G   + I
Sbjct: 501 RMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSI 560

Query: 330 SYNVILGGLCKDGK 343
           +YN ++   CK GK
Sbjct: 561 TYNTMIHAYCKQGK 574



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 137/290 (47%), Gaps = 8/290 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +++ L +A   D+ +++  + K      P   ++  +I    +   +E A+++  EM
Sbjct: 217 YTTMVSSLCKAGKIDDARELAGRFK------PSVPVYNALIDGMCKEGRIEVAIKLLGEM 270

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
               V   V  ++ ++N     G ++    LF Q+  +    +  ++  LI GC +  +L
Sbjct: 271 MDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKL 330

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A  ++  M++   +P +V + TLI+GLC    ++EAL++ + + R     P+   ++ 
Sbjct: 331 YEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRS-GCLPNVTTYSI 389

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G    G+L  A      M+      +   Y+ ++  L K    ++  +++++M   G
Sbjct: 390 LIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEG 449

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           C PN++T+N  I G C     E A  +L+ M   GC  N  +YN +L  L
Sbjct: 450 CTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDAL 499



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 119/270 (44%), Gaps = 6/270 (2%)

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           D  + P  + +  +I     +  +E A  +F +M        +  F  L+      GKL 
Sbjct: 272 DNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLY 331

Query: 136 RMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
              +L+++M +    P+  +YN LIHG   +  LE+A +V D+M +    P + T+  LI
Sbjct: 332 EALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILI 391

Query: 195 YGLCLELRVDEALKLKEDIMRV--YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
            G     +  + +   E   R+  +  +P+   +  ++  LC       A  + E+M  +
Sbjct: 392 DGFA---KSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLE 448

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
               +   +++ I  L   GR      +L+ M+  GC PN  TYN L+    +   +E A
Sbjct: 449 GCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEA 508

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDG 342
           F +  E+  +  + N ++YN +L G  + G
Sbjct: 509 FGLFQEIEARNLQPNLVTYNTVLYGFSRAG 538



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 106/229 (46%), Gaps = 10/229 (4%)

Query: 104 QMFDEMSSFNVQMTVK-------FFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSY 155
            MFD+ +S   +MT++        FNT +      G+++   +L + M+ +   P+  +Y
Sbjct: 433 SMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTY 492

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N L+       + E+A+ +F E+  R LQP LVT+ T++YG      + EAL+L    + 
Sbjct: 493 NELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKAL- 551

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK-IEMDAGIYSSLISALFKAGRK 274
           V    PD   + ++I   C  G++ +A  + E +   K    D   Y+SLI         
Sbjct: 552 VRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNI 611

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
            E  A L +   +G  PN  T+NAL+  F           ILD++  KG
Sbjct: 612 EEAMAFLDKAINQGICPNFATWNALVRCFFDSLGHMGPIHILDDILRKG 660



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 111/237 (46%), Gaps = 7/237 (2%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGR 95
           +H  +P   N++ Y  ++  L +  MFD+   ++ ++  +    P  + F   I G  G 
Sbjct: 412 SHGCRP---NVVTYTCMVDVLCKNSMFDQANSLVEKMTLEG-CTPNTMTFNTFIKGLCGN 467

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACS 154
            R+ E A+++ + M        +  +N LL+      K +    LFQ +E + + P+  +
Sbjct: 468 GRV-EWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVT 526

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YN +++G   +  + +A ++F + + R   P  +T+ T+I+  C + +V  A +L E + 
Sbjct: 527 YNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVS 586

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            +    PD   + SLI G C    +  A+   ++ +   I  +   +++L+   F +
Sbjct: 587 SMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDS 643



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 133/294 (45%), Gaps = 8/294 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ +I  L      +E  Q+  Q++  +  +P    +  +I  + ++  L  A + 
Sbjct: 348 NVVAYNTLIHGLCSNGSLEEALQVCDQMQR-SGCLPNVTTYSILIDGFAKSGDLVGASET 406

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           ++ M S   +  V  +  +++        D+   L + M  +  +P+  ++N  I G   
Sbjct: 407 WNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCG 466

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R+E A K+ + M      P + T+  L+  L    + +EA  L ++I    N++P+  
Sbjct: 467 NGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEI-EARNLQPNLV 525

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR---KNEFPAIL 281
            + +++ G    G +  AL +  + +      D+  Y+++I A  K G+     +    +
Sbjct: 526 TYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERV 585

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
             MKE    P+ +TY +LI G C   + E A   LD+  ++G   N  ++N ++
Sbjct: 586 SSMKEW--HPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALV 637



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 2/179 (1%)

Query: 166 RRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           R L      F  +      Q T  T+  +I  L  E  +D    + +  M++  +     
Sbjct: 52  RNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQ-MKMDGINCCED 110

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           +F  +I G   VG    AL +   +     +    IY+ L+ AL    +      +   M
Sbjct: 111 LFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNM 170

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           K+ G  PN  TYN L+   CK +  +AA  +  EM +KGC  + ++Y  ++  LCK GK
Sbjct: 171 KKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGK 229


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 160/320 (50%), Gaps = 40/320 (12%)

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM-SSFNVQMTVKFF 121
           F  ++++LHQ+K + R+   E  F  +   YG+A L E+A+ +F  M   F  + TVK F
Sbjct: 77  FRSLEEVLHQMKRERRVFL-EKNFIVMFKAYGKAHLPEKAVDLFHRMWGEFQCKQTVKSF 135

Query: 122 NTLLNPKLTCGKLDRMKELFQ--IMEKY--VSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           N++LN  +  G  +R  E +   +  K   + P+A ++N++I        ++ A +VF E
Sbjct: 136 NSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPNALTFNLVIKAMCRLGLVDKAIEVFRE 195

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--------MRVYNV---------- 219
           +  R   P   T+ TL++GLC E R+DEA+ L +++        +  +NV          
Sbjct: 196 IPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGD 255

Query: 220 ----------------KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
                            P+   + +L+ GLC  G+L  A+ +  +MV +K   +   + +
Sbjct: 256 LGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGT 315

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LI+     GR ++   +L  ++ RG + N   Y++LISG CKE  F  A  +  EM  KG
Sbjct: 316 LINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKG 375

Query: 324 CKANPISYNVILGGLCKDGK 343
           C  N I Y+ ++ GLC++GK
Sbjct: 376 CGPNTIVYSALIDGLCREGK 395



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 151/299 (50%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N L ++L+I  + R  + D+  ++  ++       P    +  ++    +   ++ A+ +
Sbjct: 169 NALTFNLVIKAMCRLGLVDKAIEVFREIPLRN-CAPDNYTYSTLMHGLCKEERIDEAVSL 227

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            DEM        +  FN L++     G L R  +L   M  K   P+  +YN L+HG  +
Sbjct: 228 LDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCL 287

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +LE A  + ++MV  +  P  VTFGTLI G  ++ R  +  ++    +     + +  
Sbjct: 288 KGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVS-LEARGHRGNEY 346

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           V++SLI GLC  G+ + A+ + +EMV      +  +YS+LI  L + G+ +E    L EM
Sbjct: 347 VYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEM 406

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           K +G  PNS TY++L+ G+ +  D   A  +  EM +  C  N + Y++++ GLCKDGK
Sbjct: 407 KNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGK 465



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 141/304 (46%), Gaps = 19/304 (6%)

Query: 46  NLLHYDLIITKL------GRA-KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           NL+ ++++I+ L      GRA K+ D M             VP E+ +  ++        
Sbjct: 239 NLVAFNVLISALCKKGDLGRAAKLVDNM--------FLKGCVPNEVTYNALVHGLCLKGK 290

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNI 157
           LE+A+ + ++M S         F TL+N  +  G+  D  + L  +  +    +   Y+ 
Sbjct: 291 LEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSS 350

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G     +   A +++ EMV +   P  + +  LI GLC E ++DEA     + M+  
Sbjct: 351 LISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSE-MKNK 409

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
              P+   ++SL++G    G+   A+ V +EM  +    +   YS LI+ L K G+  E 
Sbjct: 410 GYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEA 469

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP--ISYNVIL 335
             + K+M  RG K + V Y+++I GFC     E    + ++M  +G    P  I+YN++L
Sbjct: 470 LMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVITYNILL 529

Query: 336 GGLC 339
              C
Sbjct: 530 NAFC 533


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 169/323 (52%), Gaps = 13/323 (4%)

Query: 21  ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
           AL LFK       + E   ++P   N++ Y  +I+ L     + +  Q+L  +  + +I 
Sbjct: 241 ALNLFK-------EMETKGIRP---NVVTYSSLISCLCSYGRWSDASQLLSDMI-EKKIN 289

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  +I  + +      A +++D+M   ++   +  +N+L+N      +LD+ K++
Sbjct: 290 PNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQM 349

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ M  K   PD  +YN LI G   S+R+ED  ++F EM  R L    VT+ TLI GL  
Sbjct: 350 FEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 409

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +   D A K+ +  M    V PD   ++ L+ GLC  G+L  AL V + M + +I++D  
Sbjct: 410 DGDCDNAQKVFKQ-MVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIY 468

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           IY+++I  + KAG+ ++   +   +  +G KPN VTYN +ISG C +   + A+ +L +M
Sbjct: 469 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 528

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
            + G   N  +YN ++    +DG
Sbjct: 529 KEDGPLPNSGTYNTLIRAHLRDG 551



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 149/299 (49%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ Y +++  L +    D    +L++++   +I    +IF  +I    + R ++ AL +
Sbjct: 186 NLVTYGVVVNGLCKRGDTDLALNLLNKMEA-AKIEADVVIFNTIIDSLCKYRHVDDALNL 244

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F EM +  ++  V  +++L++   + G+     +L   M EK ++P+  ++N LI   V 
Sbjct: 245 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 304

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +  +A K++D+M+KR + P + T+ +L+ G C+  R+D+A ++ E  M   +  PD  
Sbjct: 305 EGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFE-FMVSKDCFPDVV 363

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LIKG C    +     +  EM    +  D   Y++LI  LF  G  +    + K+M
Sbjct: 364 TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM 423

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  P+ +TY+ L+ G C     E A  + D M     K +   Y  ++ G+CK GK
Sbjct: 424 VSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 482



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 154/330 (46%), Gaps = 36/330 (10%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ ++ +++ + + K FD +  +  +++    IV     +  +I  + R   +  AL +
Sbjct: 46  SIVEFNKLLSAIAKMKKFDVVISLGEKMQR-LEIVHGLYTYNILINCFCRRSQISLALAL 104

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
             +M     + ++   ++LLN      ++ D +  + Q++E    PD  ++  LIHG  +
Sbjct: 105 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 164

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD---------EALKLKEDI-- 213
             +  +A  + D MV+R  QP LVT+G ++ GLC     D         EA K++ D+  
Sbjct: 165 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 224

Query: 214 -----------------------MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
                                  M    ++P+   ++SLI  LC+ G  S A  +  +M+
Sbjct: 225 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 284

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
             KI  +   +++LI A  K G+  E   +  +M +R   P+  TYN+L++GFC  +  +
Sbjct: 285 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 344

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCK 340
            A  + + M  K C  + ++YN ++ G CK
Sbjct: 345 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCK 374



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 138/268 (51%), Gaps = 2/268 (0%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD- 135
           +R +P  + F  ++    + +  +  + + ++M    +   +  +N L+N      ++  
Sbjct: 41  SRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISL 100

Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
            +  L ++M+    P   + + L++G    +R+ DA  + D+MV+   +P  +TF TLI+
Sbjct: 101 ALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 160

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           GL L  +  EA+ L  D M     +P+   +  ++ GLC  G+  LAL +  +M   KIE
Sbjct: 161 GLFLHNKASEAVALV-DRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIE 219

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D  I++++I +L K    ++   + KEM+ +G +PN VTY++LIS  C    +  A  +
Sbjct: 220 ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQL 279

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
           L +M +K    N +++N ++    K+GK
Sbjct: 280 LSDMIEKKINPNLVTFNALIDAFVKEGK 307



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 103/209 (49%), Gaps = 2/209 (0%)

Query: 133 KLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           KLD    LF  M K    P    +N L+      ++ +    + ++M +  +   L T+ 
Sbjct: 27  KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 86

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
            LI   C   ++  AL L   +M++   +P     +SL+ G C    +S A+ + ++MV 
Sbjct: 87  ILINCFCRRSQISLALALLGKMMKL-GYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE 145

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
                D   +++LI  LF   + +E  A++  M +RGC+PN VTY  +++G CK  D + 
Sbjct: 146 MGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDL 205

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCK 340
           A  +L++M     +A+ + +N I+  LCK
Sbjct: 206 ALNLLNKMEAAKIEADVVIFNTIIDSLCK 234



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 108/211 (51%), Gaps = 4/211 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  +I  + +++ +E   ++F EMS   +      + TL+      G  D  +++
Sbjct: 360 PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 419

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F Q++   V PD  +Y+IL+ G   + +LE A +VFD M K  ++  +  + T+I G+C 
Sbjct: 420 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 479

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             +VD+   L    + +  VKP+   + ++I GLC+   L  A  + ++M  D    ++G
Sbjct: 480 AGKVDDGWDLFCS-LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSG 538

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCK 290
            Y++LI A  + G K     +++EM  R C+
Sbjct: 539 TYNTLIRAHLRDGDKAASAELIREM--RSCR 567


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 154/296 (52%), Gaps = 3/296 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+   +++I  L + +  +  +  L  ++ +  + P  + +  +I  Y R  LLE A ++
Sbjct: 357 NVYTLNIMINALCKNQKIENTKSFLSDME-EKGVFPDVVTYNTLINAYCRQGLLEEAFEL 415

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            D MS   ++  V  +N ++N     GK  R K +   M K  +SPD  +YNIL+  C  
Sbjct: 416 MDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCR 475

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  + DA ++FDEM  + + P LV+F  LI  L     +D+ALK   D M+   + PD  
Sbjct: 476 NDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRD-MKNAGLAPDNV 534

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++  LI G C  G +S AL V++EM+     +D   Y+++++ L K    +E   +  EM
Sbjct: 535 IYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEM 594

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            ERG  P+  T+  LI+G+ K+ +   A T+ + M  +  K + ++YN ++ G CK
Sbjct: 595 TERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCK 650



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 157/301 (52%), Gaps = 7/301 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ +  +I  L +    D+  +    +K +  + P  +I+  +IG + R  ++  AL++
Sbjct: 497 DLVSFSALIGLLSKNGCLDQALKYFRDMK-NAGLAPDNVIYTILIGGFCRNGVMSEALKV 555

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            DEM      + V  +NT+LN       L    ELF ++ E+ V PD  ++  LI+G   
Sbjct: 556 RDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXK 615

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM--RVYNVKPD 222
              +  A  +F+ M++R L+P +VT+ TLI G C    +++  +L  D++  R+Y   P+
Sbjct: 616 DGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIY---PN 672

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              +  LI G C +G +S A  + +EMV    E      ++++    +AG   +    L 
Sbjct: 673 HISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLS 732

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            M  +G  P+ +TYN LI+GF KEE+ + AF ++++M + G   + I+YNVIL G  + G
Sbjct: 733 NMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQG 792

Query: 343 K 343
           +
Sbjct: 793 R 793



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 146/298 (48%), Gaps = 5/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQ 104
           N L +DL++    +A+   E  +    LK     V   I  CN ++G   +   ++ A +
Sbjct: 287 NPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCV--SINACNSLLGGLVKVGWVDLAWE 344

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
           ++ E+    VQ+ V   N ++N      K++  K     ME K V PD  +YN LI+   
Sbjct: 345 IYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYC 404

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
               LE+A+++ D M  + L+P + T+  +I GLC   +   A  + ++++++  + PD 
Sbjct: 405 RQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI-GMSPDT 463

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             +  L+   C    +  A  + +EM    +  D   +S+LI  L K G  ++     ++
Sbjct: 464 ATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRD 523

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           MK  G  P++V Y  LI GFC+      A  + DEM ++GC  + ++YN IL GLCK+
Sbjct: 524 MKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKE 581



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 146/281 (51%), Gaps = 7/281 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ I+  L + KM  E  ++  ++  +  + P    F  +I  Y +   + +A+ +
Sbjct: 567 DVVTYNTILNGLCKEKMLSEADELFTEMT-ERGVFPDFYTFTTLINGYXKDGNMNKAVTL 625

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           F+ M   N++  V  +NTL++      +++++ EL+  ++ + + P+  SY ILI+G   
Sbjct: 626 FEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCN 685

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--MRVYNVKPD 222
              + +A++++DEMV++  + T++T  T++ G C   R   A+K  E +  M +  + PD
Sbjct: 686 MGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYC---RAGNAVKADEFLSNMLLKGIVPD 742

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
           G  + +LI G      +  A  +  +M    +  D   Y+ +++   + GR  E   I+ 
Sbjct: 743 GITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIML 802

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +M ERG  P+  TY +LI+G   + + + AF + DEM  +G
Sbjct: 803 KMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRG 843



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 111/207 (53%), Gaps = 18/207 (8%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRR-------LQPTLVTFGT-----LIYGLCLEL 201
           S++ +IH  V SRRL DA  V   MV++        ++  ++T+G      L++ L +  
Sbjct: 238 SFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRT 297

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFA-----SLIKGLCAVGELSLALGVKEEMVRDKIEM 256
            V +A KL+E       +K  G   +     SL+ GL  VG + LA  + +E+VR  +++
Sbjct: 298 YV-QARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQV 356

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +    + +I+AL K  +     + L +M+E+G  P+ VTYN LI+ +C++   E AF ++
Sbjct: 357 NVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELM 416

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
           D M  KG K    +YN I+ GLCK GK
Sbjct: 417 DSMSGKGLKPCVFTYNAIINGLCKTGK 443



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 61/111 (54%), Gaps = 7/111 (6%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           IVP  I +  +I  + +   ++RA  + ++M +  +   V  +N +LN      +  RM+
Sbjct: 739 IVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNG---FSRQGRMQ 795

Query: 139 E----LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
           E    + +++E+ V+PD  +Y  LI+G V    L++A++V DEM++R   P
Sbjct: 796 EAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 846


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 155/298 (52%), Gaps = 3/298 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           + N+   +++I  L + +  +  +  L  ++ +  + P  + +  +I  Y R  LLE A 
Sbjct: 251 QVNVYTLNIMINALCKNQKIENTKSFLSDME-EKGVFPDVVTYNTLINAYCRQGLLEEAF 309

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
           ++ D MS   ++  V  +N ++N     GK  R K +   M K  +SPD  +YNIL+  C
Sbjct: 310 ELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVEC 369

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             +  + DA ++FDEM  + + P LV+F  LI  L     +D+ALK   D M+   + PD
Sbjct: 370 CRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRD-MKNAGLAPD 428

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
             ++  LI G C  G +S AL V++EM+     +D   Y+++++ L K    +E   +  
Sbjct: 429 NVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFT 488

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           EM ERG  P+  T+  LI+G+ K+ +   A T+ + M  +  K + ++YN ++ G CK
Sbjct: 489 EMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCK 546



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 157/301 (52%), Gaps = 7/301 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ +  +I  L +    D+  +    +K +  + P  +I+  +IG + R  ++  AL++
Sbjct: 393 DLVSFSALIGLLSKNGCLDQALKYFRDMK-NAGLAPDNVIYTILIGGFCRNGVMSEALKV 451

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            DEM      + V  +NT+LN       L    ELF ++ E+ V PD  ++  LI+G   
Sbjct: 452 RDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSK 511

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM--RVYNVKPD 222
              +  A  +F+ M++R L+P +VT+ TLI G C    +++  +L  D++  R+Y   P+
Sbjct: 512 DGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIY---PN 568

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              +  LI G C +G +S A  + +EMV    E      ++++    +AG   +    L 
Sbjct: 569 HISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLS 628

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            M  +G  P+ +TYN LI+GF KEE+ + AF ++++M + G   + I+YNVIL G  + G
Sbjct: 629 NMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQG 688

Query: 343 K 343
           +
Sbjct: 689 R 689



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 146/281 (51%), Gaps = 7/281 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ I+  L + KM  E  ++  ++  +  + P    F  +I  Y +   + +A+ +
Sbjct: 463 DVVTYNTILNGLCKEKMLSEADELFTEMT-ERGVFPDFYTFTTLINGYSKDGNMNKAVTL 521

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           F+ M   N++  V  +NTL++      +++++ EL+  ++ + + P+  SY ILI+G   
Sbjct: 522 FEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCN 581

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--MRVYNVKPD 222
              + +A++++DEMV++  + T++T  T++ G C   R   A+K  E +  M +  + PD
Sbjct: 582 MGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYC---RAGNAVKADEFLSNMLLKGIVPD 638

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
           G  + +LI G      +  A  +  +M    +  D   Y+ +++   + GR  E   I+ 
Sbjct: 639 GITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIML 698

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +M ERG  P+  TY +LI+G   + + + AF + DEM  +G
Sbjct: 699 KMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRG 739



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 146/298 (48%), Gaps = 5/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQ 104
           N L +DL++    +A+   E  +    LK     V   I  CN ++G   +   ++ A +
Sbjct: 183 NPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCV--SINACNSLLGGLVKVGWVDLAWE 240

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
           ++ E+    VQ+ V   N ++N      K++  K     ME K V PD  +YN LI+   
Sbjct: 241 IYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYC 300

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
               LE+A+++ D M  + L+P + T+  +I GLC   +   A  + ++++++  + PD 
Sbjct: 301 RQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI-GMSPDT 359

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             +  L+   C    +  A  + +EM    +  D   +S+LI  L K G  ++     ++
Sbjct: 360 ATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRD 419

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           MK  G  P++V Y  LI GFC+      A  + DEM ++GC  + ++YN IL GLCK+
Sbjct: 420 MKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKE 477



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 111/207 (53%), Gaps = 18/207 (8%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRR-------LQPTLVTFGT-----LIYGLCLEL 201
           S++ +IH  V SRRL DA  V   MV++        ++  ++T+G      L++ L +  
Sbjct: 134 SFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRT 193

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFA-----SLIKGLCAVGELSLALGVKEEMVRDKIEM 256
            V +A KL+E       +K  G   +     SL+ GL  VG + LA  + +E+VR  +++
Sbjct: 194 YV-QARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQV 252

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +    + +I+AL K  +     + L +M+E+G  P+ VTYN LI+ +C++   E AF ++
Sbjct: 253 NVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELM 312

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
           D M  KG K    +YN I+ GLCK GK
Sbjct: 313 DSMSGKGLKPCVFTYNAIINGLCKTGK 339



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 61/111 (54%), Gaps = 7/111 (6%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           IVP  I +  +I  + +   ++RA  + ++M +  +   V  +N +LN      +  RM+
Sbjct: 635 IVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNG---FSRQGRMQ 691

Query: 139 E----LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
           E    + +++E+ V+PD  +Y  LI+G V    L++A++V DEM++R   P
Sbjct: 692 EAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 742


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 159/300 (53%), Gaps = 3/300 (1%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +N + Y++I+  L +     E   +L Q++     VP  + +  ++  Y +   L + L+
Sbjct: 250 WNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGN-VPDVVSYSVIVDGYCQVEQLGKVLK 308

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
           + +E+    ++     +N++++     G++   +++ ++M+ + + PD   Y  LI G  
Sbjct: 309 LMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFG 368

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            S  +   +K+FDEM ++++ P  VT+ ++I+GLC   +V EA KL  +++    +KPD 
Sbjct: 369 KSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLS-KGLKPDE 427

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +LI G C  GE+  A  +  +MV   +  +   Y++L+  L K G  +    +L E
Sbjct: 428 VTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHE 487

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M E+G +PN  TYNALI+G CK  + E A  +++EM   G   + I+Y  I+   CK G+
Sbjct: 488 MSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGE 547



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 158/301 (52%), Gaps = 6/301 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP +Y    Y+ II+ L +     E +Q+L  +K + RI P  +++  +I  +G++  +
Sbjct: 318 LKPNQYT---YNSIISFLCKTGRVVEAEQVLRVMK-NQRIFPDNVVYTTLISGFGKSGNV 373

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNIL 158
               ++FDEM    +      + ++++     GK+   ++LF +++ K + PD  +Y  L
Sbjct: 374 SVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTAL 433

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   +  +++A+ + ++MV++ L P +VT+  L+ GLC    VD A +L  + M    
Sbjct: 434 IDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHE-MSEKG 492

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           ++P+   + +LI GLC VG +  A+ + EEM       D   Y++++ A  K G   +  
Sbjct: 493 LQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAH 552

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +L+ M ++G +P  VT+N L++GFC     E    ++  M DKG   N  ++N ++   
Sbjct: 553 ELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQY 612

Query: 339 C 339
           C
Sbjct: 613 C 613



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 131/246 (53%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           +  A ++F E S   V      +N +L+     GK+     L   ME +   PD  SY++
Sbjct: 233 IRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSV 292

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           ++ G     +L    K+ +E+ ++ L+P   T+ ++I  LC   RV EA ++   +M+  
Sbjct: 293 IVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLR-VMKNQ 351

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + PD  V+ +LI G    G +S+   + +EM R KI  D   Y+S+I  L +AG+  E 
Sbjct: 352 RIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEA 411

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +  EM  +G KP+ VTY ALI G+CK  + + AF++ ++M +KG   N ++Y  ++ G
Sbjct: 412 RKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDG 471

Query: 338 LCKDGK 343
           LCK G+
Sbjct: 472 LCKCGE 477



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 149/356 (41%), Gaps = 71/356 (19%)

Query: 50  YDLIITKLGRA-------KMFDEMQQ------------ILHQLKHDTRIV---------- 80
           Y  +I+  G++       K+FDEM++            ++H L    ++V          
Sbjct: 360 YTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEML 419

Query: 81  -----PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
                P E+ +  +I  Y +A  ++ A  + ++M    +   V  +  L++    CG++D
Sbjct: 420 SKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVD 479

Query: 136 RMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM---------------- 178
              EL   M EK + P+ C+YN LI+G      +E A K+ +EM                
Sbjct: 480 IANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIM 539

Query: 179 -------------------VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
                              + + LQPT+VTF  L+ G C+   +++  +L +  M    +
Sbjct: 540 DAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIK-WMLDKGI 598

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   F SL+K  C    +   + + + M    +  D   Y+ LI    KA    E   
Sbjct: 599 MPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWF 658

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           + KEM E+G    + +YN+LI GF K + FE A  + +EM   G  A    Y++ +
Sbjct: 659 LHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFV 714



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 129/278 (46%), Gaps = 3/278 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  ++  L +    D   ++LH++  +  + P    +  +I    +   +E+A+++
Sbjct: 461 NVVTYTALVDGLCKCGEVDIANELLHEMS-EKGLQPNVCTYNALINGLCKVGNIEQAVKL 519

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            +EM           + T+++     G++ +  EL +IM +K + P   ++N+L++G  +
Sbjct: 520 MEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCM 579

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S  LED  ++   M+ + + P   TF +L+   C+   +   +++ +  M    V PD  
Sbjct: 580 SGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKG-MHAQGVVPDTN 638

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LIKG C    +  A  + +EMV     + A  Y+SLI   +K  +  E   + +EM
Sbjct: 639 TYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEM 698

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           +  G       Y+  +    +E ++E    + DE  +K
Sbjct: 699 RTHGFIAEKEIYDIFVDVNYEEGNWENTLELCDEAIEK 736


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 162/312 (51%), Gaps = 8/312 (2%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           E+HP    R +    + ++  L  AK  D  ++         R+ P    F  VI    R
Sbjct: 147 ESHPR--HRPSTSSVNALLAGLVGAKRVDLAEKAFRSALR-RRVSPDIYTFNTVISGLCR 203

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE----LFQIMEKYVSPD 151
              L +A  +  ++ ++ +  +V  +N+L++     G    M      L +++E  +SP 
Sbjct: 204 IGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPT 263

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
           A ++ +LI+G   +     A +VF+EM ++ +  ++VT+ +LI GLC E +V+E +KL E
Sbjct: 264 AVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLME 323

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           + M    + P+   F  ++KG C  G ++ A    + M    +E D  IY+ LI    + 
Sbjct: 324 E-MEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRL 382

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G+  +  A+ + M ++G  PN  TYN LI+GF +  D+ +A  +LDEM +KG +A+ ++Y
Sbjct: 383 GKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTY 442

Query: 332 NVILGGLCKDGK 343
           NV++G LC  G+
Sbjct: 443 NVLIGALCCKGE 454



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 154/313 (49%), Gaps = 7/313 (2%)

Query: 34  DTEAHPLKP--FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIG 91
           D +A  L P    YN L  D    K G   M+  +  +L ++  +  I P  + F  +I 
Sbjct: 216 DIKAWGLAPSVATYNSL-IDGYCKKGGAGNMY-HVDMLLKEMV-EAGISPTAVTFGVLIN 272

Query: 92  FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSP 150
            Y +      A+++F+EM    +  +V  +N+L++   + GK++   +L + ME   +SP
Sbjct: 273 GYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSP 332

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           +  ++  ++ G      + DA    D M +R ++P +V +  LI       ++++A+ +K
Sbjct: 333 NEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVK 392

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
           E + +   + P+   +  LI G    G+   A G+ +EM    IE D   Y+ LI AL  
Sbjct: 393 EAMAK-KGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCC 451

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            G   +   +L EM E G +PN +TYN +I GFC + + ++A+ I   M     +AN ++
Sbjct: 452 KGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVT 511

Query: 331 YNVILGGLCKDGK 343
           YNV +   C+ GK
Sbjct: 512 YNVFIKYFCQIGK 524


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/283 (31%), Positives = 150/283 (53%), Gaps = 10/283 (3%)

Query: 60  AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK 119
           + +FD+M +I         +VP  + +  +I  Y     LERA    DEM    +  +V 
Sbjct: 263 SGLFDKMVEI--------GLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVS 314

Query: 120 FFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
            +N L++     G++    ++ + M +K + PDA +YNILI+G       + A+ + +EM
Sbjct: 315 TYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEM 374

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
           + + ++PT VT+ +LIY L    R+ EA  L E I+    V PD  +F ++I G CA G 
Sbjct: 375 LSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILD-QGVSPDVIMFNAMIDGHCANGN 433

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           +  A  + +EM R  +  D   +++L+    + G+  E   +L EMK RG KP+ ++YN 
Sbjct: 434 VERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNT 493

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           LISG+ +  D + AF + DEM   G     ++YN ++  LCK+
Sbjct: 494 LISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKN 536



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 165/347 (47%), Gaps = 21/347 (6%)

Query: 6   IRLACLPRLQKDPKLALQLFKNPNPNPNDTEAH-----PLKPFRYNL---LHYDLIITKL 57
           + LA LP     PKLALQL K        T         L   R ++   + +DL+  KL
Sbjct: 134 VLLARLP----SPKLALQLLKQVMETRIATNRELFDELTLSRDRLSVKSSIVFDLLEGKL 189

Query: 58  GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT 117
            +A+ F    + L          P  + +  +I  Y     +E A ++ D M    ++  
Sbjct: 190 KKAREFIGFMEGLG-------FKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPD 242

Query: 118 VKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFD 176
              + +L++     G+L+    LF +++E  + P+A +YN LI G      LE A+   D
Sbjct: 243 SYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRD 302

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
           EMVK+ + P++ T+  L++ L +E R+ EA  + ++ MR   + PD   +  LI G    
Sbjct: 303 EMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKE-MRKKGIIPDAITYNILINGYSRC 361

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           G    A  +  EM+   IE     Y+SLI  L +  R  E   + +++ ++G  P+ + +
Sbjct: 362 GNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMF 421

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           NA+I G C   + E AF +L EM  K    + +++N ++ G C++GK
Sbjct: 422 NAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGK 468


>gi|297812025|ref|XP_002873896.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319733|gb|EFH50155.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 507

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 179/337 (53%), Gaps = 14/337 (4%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L + ++DP+ AL +F          +A   K F +N   Y +++  L R K F  +  IL
Sbjct: 63  LMKRERDPQRALDIF---------NKASQQKGFNHNNATYSVLLDNLVRHKKFLAVDAIL 113

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF-NVQMTVKFFNTLLNPKL 129
           HQ+K++T    +E +F N++  + R  L ++ ++MF+ +     V+ ++   +T LN  +
Sbjct: 114 HQMKYET-CRFQESLFLNLMRHFSRFDLHDKVMEMFNLIQVIARVKPSLNAISTCLNLLI 172

Query: 130 TCGKLDRMKELFQIMEKYVS--PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ-PT 186
             G++D  ++L    +  ++  P+ C +NIL+     +  ++ A++V +EM +  +  P 
Sbjct: 173 DSGEVDLARKLLLYAKHNLALQPNTCIFNILVKHHCKNGDIDSAFRVVEEMKRSGISYPN 232

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
            +T+ TL+  L  + R  EA++L ED++    + PD  +F  +I G C  GE+  A  + 
Sbjct: 233 SITYSTLMDCLFAQSRSKEAVELFEDMISKRGISPDPVIFNVMINGFCRSGEVERAKMIL 292

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           + M ++    +   YS+L++   K G+  E   +  E+K+ G K ++V Y  L++  C+ 
Sbjct: 293 DFMKKNGCNPNVYNYSALMNGFCKEGKIQEAKQVFDEVKKTGLKLDTVGYTTLMNCLCRN 352

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + + A  +L EM    C+A+ ++YNVIL GL  +G+
Sbjct: 353 GEIDEAMKLLGEMKASRCRADALTYNVILRGLSSEGR 389



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 146/297 (49%), Gaps = 5/297 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIG-FYGRARLLERALQMFDE 108
           +++++    +    D   +++ ++K      P  I +  ++   + ++R  E A+++F++
Sbjct: 200 FNILVKHHCKNGDIDSAFRVVEEMKRSGISYPNSITYSTLMDCLFAQSRSKE-AVELFED 258

Query: 109 M-SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSR 166
           M S   +      FN ++N     G+++R K +   M+K   +P+  +Y+ L++G     
Sbjct: 259 MISKRGISPDPVIFNVMINGFCRSGEVERAKMILDFMKKNGCNPNVYNYSALMNGFCKEG 318

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           ++++A +VFDE+ K  L+   V + TL+  LC    +DEA+KL  + M+    + D   +
Sbjct: 319 KIQEAKQVFDEVKKTGLKLDTVGYTTLMNCLCRNGEIDEAMKLLGE-MKASRCRADALTY 377

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
             +++GL + G    AL + ++   + + ++ G Y  +++AL   G   +    L  M +
Sbjct: 378 NVILRGLSSEGRSEEALQMLDQWGCEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSK 437

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           RG  P+  T+N L+   C+  + E    +L      G    P S+  ++  +CK+ K
Sbjct: 438 RGIWPHHATWNELVVRLCESGNTEIGVRVLIGFLGIGLIPAPKSWGAVVESICKERK 494



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 132/282 (46%), Gaps = 4/282 (1%)

Query: 64  DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF-FN 122
           D  +++L   KH+  + P   IF  ++  + +   ++ A ++ +EM    +       ++
Sbjct: 178 DLARKLLLYAKHNLALQPNTCIFNILVKHHCKNGDIDSAFRVVEEMKRSGISYPNSITYS 237

Query: 123 TLLNPKLTCGKLDRMKELFQ--IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           TL++      +     ELF+  I ++ +SPD   +N++I+G   S  +E A  + D M K
Sbjct: 238 TLMDCLFAQSRSKEAVELFEDMISKRGISPDPVIFNVMINGFCRSGEVERAKMILDFMKK 297

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
               P +  +  L+ G C E ++ EA ++ +++ +   +K D   + +L+  LC  GE+ 
Sbjct: 298 NGCNPNVYNYSALMNGFCKEGKIQEAKQVFDEVKKT-GLKLDTVGYTTLMNCLCRNGEID 356

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A+ +  EM   +   DA  Y+ ++  L   GR  E   +L +    G   N  +Y  ++
Sbjct: 357 EAMKLLGEMKASRCRADALTYNVILRGLSSEGRSEEALQMLDQWGCEGVHLNKGSYRIIL 416

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +  C   + E A   L  M  +G   +  ++N ++  LC+ G
Sbjct: 417 NALCCNGELEKAVKFLSVMSKRGIWPHHATWNELVVRLCESG 458


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/268 (32%), Positives = 146/268 (54%), Gaps = 6/268 (2%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK---LD 135
           +VP  +I+  VIG + RA L+  AL++ DEM        V  +NTLLN    C +   LD
Sbjct: 12  LVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNG--LCKERRLLD 69

Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
               L ++ E+ V PD C++  LIHG  +  +L+ A ++FD M+ +RL+P +VT+ TLI 
Sbjct: 70  AEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLID 129

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G+C +  +D+A  L +D M    + P+   ++ LI   C  G++  A G  +EM+   I 
Sbjct: 130 GMCRQGDLDKANDLWDD-MHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGIL 188

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            +   Y+S+I    ++G  ++    L++M      P+ +TYN LI G+ KE+    AF +
Sbjct: 189 PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL 248

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
           L+ M  +  + + ++YN+++ G    G 
Sbjct: 249 LNMMEKEKVQPDVVTYNMLINGFSVHGN 276



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 146/280 (52%), Gaps = 5/280 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI-IFCNVIGFYGRARLLERALQ 104
           +++ Y+ ++  L + +   + + +L++++   R VP ++  F  +I  Y     L++ALQ
Sbjct: 50  DVVTYNTLLNGLCKERRLLDAEGLLNEMRE--RGVPPDLCTFTTLIHGYCIEGKLDKALQ 107

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
           +FD M +  ++  +  +NTL++     G LD+  +L+  M  + + P+  +Y+ILI    
Sbjct: 108 LFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHC 167

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              ++EDA+   DEM+ + + P ++T+ ++I G C    V +  K  + +M V  V PD 
Sbjct: 168 EKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMM-VNKVSPDL 226

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +LI G     ++  A  +   M ++K++ D   Y+ LI+     G   E   I ++
Sbjct: 227 ITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEK 286

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           M  +G +P+  TY ++I+G     + + AF + DEM  +G
Sbjct: 287 MCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 326



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 73/129 (56%)

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           MR + + PDG ++  +I G C  G +S AL V++EMV      D   Y++L++ L K  R
Sbjct: 7   MRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERR 66

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             +   +L EM+ERG  P+  T+  LI G+C E   + A  + D M ++  + + ++YN 
Sbjct: 67  LLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNT 126

Query: 334 ILGGLCKDG 342
           ++ G+C+ G
Sbjct: 127 LIDGMCRQG 135



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           A L+EM+  G  P+ V Y  +I GFC+      A  + DEM   GC  + ++YN +L GL
Sbjct: 2   AYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGL 61

Query: 339 CKD 341
           CK+
Sbjct: 62  CKE 64


>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
 gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
 gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 173/330 (52%), Gaps = 13/330 (3%)

Query: 15  QKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 74
           +KD K A++L+        D+  +P      N+  ++++I+ L +    D+  +I  ++K
Sbjct: 232 EKDHKTAMELWDRL---LEDSSVYP------NVKTHNIMISGLSKCGRVDDCLKIWERMK 282

Query: 75  HDTRIVPKEI-IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133
            + R   K++  + ++I     A  +++A  +F+E+      + V  +NT+L     CGK
Sbjct: 283 QNER--EKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGK 340

Query: 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           +    EL++IME   S +  SYNILI G + + ++++A  ++  M  +       T+G  
Sbjct: 341 IKESLELWRIMEHKNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIF 400

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I+GLC+   V++AL + +++        D   +AS+I  LC    L  A  + +EM +  
Sbjct: 401 IHGLCVNGYVNKALGVMQEV-ESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHG 459

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           +E+++ + ++LI  L +  R  E    L+EM + GC+P  V+YN LI G CK   F  A 
Sbjct: 460 VELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEAS 519

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
             + EM + G K +  +Y+++L GLC+D K
Sbjct: 520 AFVKEMLENGWKPDLKTYSILLCGLCRDRK 549



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 173/370 (46%), Gaps = 48/370 (12%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L + +K+P+ A  LF +   +P          + ++ + Y  I+ +L   +M + + +I+
Sbjct: 16  LLKSEKNPRAAFALFDSATRHPG---------YAHSAVVYHHILRRLSETRMVNHVSRIV 66

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS-FNVQMTVKFFNTLLNPKL 129
            +L         E +  +VI  YG+  + ++AL +F  M   F  +  ++ +NTLLN  +
Sbjct: 67  -ELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFV 125

Query: 130 TCGKLDRMKELFQIMEKY-VSPDACSYNILI----------------------------- 159
              +  +++ LF   E   V+P+  +YN+LI                             
Sbjct: 126 EAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVF 185

Query: 160 -HGCVV-----SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
            +  V+     + +L+DA ++FDEM +R + P +  +  LI G   E     A++L + +
Sbjct: 186 SYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRL 245

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           +   +V P+ +    +I GL   G +   L + E M +++ E D   YSSLI  L  AG 
Sbjct: 246 LEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGN 305

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            ++  ++  E+ ER    + VTYN ++ GFC+    + +  +   M  K    N +SYN+
Sbjct: 306 VDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKN-SVNIVSYNI 364

Query: 334 ILGGLCKDGK 343
           ++ GL ++GK
Sbjct: 365 LIKGLLENGK 374



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 160/336 (47%), Gaps = 36/336 (10%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ ++  Y  +I  L +A   D+  ++  ++  +  + P    +  +I  + + +  + A
Sbjct: 180 FKPDVFSYSTVINDLAKAGKLDDALELFDEMS-ERGVAPDVTCYNILIDGFLKEKDHKTA 238

Query: 103 LQMFDEM-SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV-SPDACSYNILIH 160
           ++++D +    +V   VK  N +++    CG++D   ++++ M++     D  +Y+ LIH
Sbjct: 239 MELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIH 298

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK---------- 210
           G   +  ++ A  VF+E+ +R+    +VT+ T++ G C   ++ E+L+L           
Sbjct: 299 GLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVN 358

Query: 211 -----------------EDIMRVYNVKP------DGQVFASLIKGLCAVGELSLALGVKE 247
                            ++   ++ + P      D   +   I GLC  G ++ ALGV +
Sbjct: 359 IVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQ 418

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           E+      +D   Y+S+I  L K  R  E   ++KEM + G + NS   NALI G  ++ 
Sbjct: 419 EVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDS 478

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               A   L EMG  GC+   +SYN+++ GLCK GK
Sbjct: 479 RLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGK 514



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 141/297 (47%), Gaps = 7/297 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI--IFCNVIGFYGRARLLERAL 103
           N++ Y+++I  L      DE   I   +        K    IF + +   G    + +AL
Sbjct: 358 NIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNG---YVNKAL 414

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
            +  E+ S    + V  + ++++      +L+    L + M K+ V  ++   N LI G 
Sbjct: 415 GVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGL 474

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
           +   RL +A     EM K   +PT+V++  LI GLC   +  EA    ++++     KPD
Sbjct: 475 IRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLE-NGWKPD 533

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
            + ++ L+ GLC   ++ LAL +  + ++  +E D  +++ LI  L   G+ ++   ++ 
Sbjct: 534 LKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMA 593

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
            M+ R C  N VTYN L+ GF K  D   A  I   M   G + + ISYN I+ GLC
Sbjct: 594 NMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLC 650



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 115/251 (45%), Gaps = 2/251 (0%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145
           + ++I    + + LE A  +  EMS   V++     N L+   +   +L       + M 
Sbjct: 432 YASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMG 491

Query: 146 KY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
           K    P   SYNILI G   + +  +A     EM++   +P L T+  L+ GLC + ++D
Sbjct: 492 KNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKID 551

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
            AL+L    ++   ++ D  +   LI GLC+VG+L  A+ V   M       +   Y++L
Sbjct: 552 LALELWHQFLQS-GLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTL 610

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           +   FK G  N    I   M + G +P+ ++YN ++ G C       A    D+  + G 
Sbjct: 611 MEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGI 670

Query: 325 KANPISYNVIL 335
                ++N+++
Sbjct: 671 FPTVYTWNILV 681


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 153/302 (50%), Gaps = 9/302 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ ++  L +A   +    ++  +  D  + P  I +  ++  + +A  ++ AL++
Sbjct: 257 NVVTYNALVNGLCKADKMERAHAMIESMV-DKGVTPDVITYSVLVDAFCKASRVDEALEL 315

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM----EKYVSPDACSYNILIHG 161
              M+S      V  FN++++      K DR  E FQI      + + PD  ++NILI G
Sbjct: 316 LHGMASRGCTPNVVTFNSIIDGLC---KSDRSGEAFQIALQVYNRMLVPDKVTFNILIAG 372

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              +   E A  +F+EMV + +QP ++TFG LI GLC   +V+ A  +  D+M    V P
Sbjct: 373 ACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDIL-DLMGNLGVPP 431

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   +  L+ GLC  G +       EEMV      ++  Y SL+ AL +A R ++   ++
Sbjct: 432 NVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLV 491

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            ++K  G  P++VTYN L+ G  K    E A T+L+EM  KG + +  ++    GGL + 
Sbjct: 492 SKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRS 551

Query: 342 GK 343
           G 
Sbjct: 552 GN 553



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 149/301 (49%), Gaps = 5/301 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           N++ Y ++I  L +    DE ++++ ++ +    ++P  I + + +    +  +   A +
Sbjct: 150 NVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACE 209

Query: 105 MFDEM--SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGC 162
           +   +   S  V      F+TL++    CG+ D       I   YV P+  +YN L++G 
Sbjct: 210 LMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNDDMIAGGYV-PNVVTYNALVNGL 268

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             + ++E A  + + MV + + P ++T+  L+   C   RVDEAL+L    M      P+
Sbjct: 269 CKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHG-MASRGCTPN 327

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              F S+I GLC       A  +  ++    +  D   ++ LI+   KAG   +  A+ +
Sbjct: 328 VVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFE 387

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           EM  +  +P+ +T+ ALI G CK    EAA  ILD MG+ G   N ++YNV++ GLCK G
Sbjct: 388 EMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSG 447

Query: 343 K 343
           +
Sbjct: 448 R 448



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 152/314 (48%), Gaps = 11/314 (3%)

Query: 39  PLKPF-----RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           PLK F       ++  Y++++  L RA       +I         + P  + +  +I   
Sbjct: 32  PLKFFFVRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGL 91

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDA 152
            ++  L   +++F+E+        V  +NTL++     G L+  + L   M  +   P+ 
Sbjct: 92  CKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNV 151

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRR--LQPTLVTFGTLIYGLCLELRVDEALKLK 210
            +Y++LI+G     R+++A ++  EM ++   + P ++T+ + + GLC +    EA +L 
Sbjct: 152 VTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELM 211

Query: 211 EDIMR-VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
             +      V PD   F++LI GLC  G+   A    ++M+      +   Y++L++ L 
Sbjct: 212 RSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEA--CNDDMIAGGYVPNVVTYNALVNGLC 269

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           KA +     A+++ M ++G  P+ +TY+ L+  FCK    + A  +L  M  +GC  N +
Sbjct: 270 KADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVV 329

Query: 330 SYNVILGGLCKDGK 343
           ++N I+ GLCK  +
Sbjct: 330 TFNSIIDGLCKSDR 343



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 150/334 (44%), Gaps = 38/334 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT-RIVPKEIIFCNVIGFYGRARLLERALQ 104
           N++ Y+  +  L +  M  E  +++  L+  + R+ P  + F  +I    +    + A  
Sbjct: 187 NIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN 246

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
             D+M +      V  +N L+N      K++R   + + M +K V+PD  +Y++L+    
Sbjct: 247 --DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFC 304

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI---------- 213
            + R+++A ++   M  R   P +VTF ++I GLC   R  EA ++   +          
Sbjct: 305 KASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKV 364

Query: 214 ------------------------MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
                                   M   N++PD   F +LI GLC  G++  A  + + M
Sbjct: 365 TFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLM 424

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
               +  +   Y+ L+  L K+GR  E    L+EM   GC P S+TY +L+   C+    
Sbjct: 425 GNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRT 484

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + A  ++ ++   G   + ++YN+++ GL K GK
Sbjct: 485 DDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGK 518



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 145/310 (46%), Gaps = 23/310 (7%)

Query: 46  NLLHYDLIITKLGRA-------KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
            ++ Y+ II  L ++       ++F+E+ +  H         P  + +  +I    +A  
Sbjct: 80  TIVTYNTIINGLCKSNELGAGMELFEELVKRGHH--------PDVVTYNTLIDSLCKAGD 131

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY---VSPDACSY 155
           LE A ++   MSS      V  ++ L+N     G++D  +EL Q M +    V P+  +Y
Sbjct: 132 LEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITY 191

Query: 156 NILIHGCVVSRRLEDAWKVFDEM--VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           N  + G        +A ++   +     R+ P  VTF TLI GLC   + DEA     D 
Sbjct: 192 NSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN---DD 248

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M      P+   + +L+ GLC   ++  A  + E MV   +  D   YS L+ A  KA R
Sbjct: 249 MIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASR 308

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +E   +L  M  RGC PN VT+N++I G CK +    AF I  ++ ++    + +++N+
Sbjct: 309 VDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNI 368

Query: 334 ILGGLCKDGK 343
           ++ G CK G 
Sbjct: 369 LIAGACKAGN 378


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 161/335 (48%), Gaps = 38/335 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y +I+ +L RA   DE  ++ H++  +       + +  +I    +   +ERA ++
Sbjct: 44  DVATYTIIVDRLCRAGKVDEADELFHKMI-ERGCSANTVAYNALINGLCKDENIERAYKL 102

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            +EM+S   +     +NT+L+     GK+   K+ F  M  +  SPD  +YN L+     
Sbjct: 103 LEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYK 162

Query: 165 SRRLEDAWKVFD--EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR------- 215
             ++ +AW +F   +M  R++ P L+T+ TLI G C   + DEA+KL +D++        
Sbjct: 163 EGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDT 222

Query: 216 -VYN--------------------------VKPDGQVFASLIKGLCAVGELSLALGVKEE 248
             YN                            P+G  ++ ++ G C VG ++  L + EE
Sbjct: 223 VTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEE 282

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M   +   D  + +++I  L KA + ++   +L+EM + G  P+ VTYN L+ G CK   
Sbjct: 283 MTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNL 342

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + A  +   M D GC  + +SY+V+L GLCK  K
Sbjct: 343 VDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNK 377



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 134/265 (50%), Gaps = 4/265 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  +I    +   +  AL+M +EM+   V   V  +  +++     GK+D   EL
Sbjct: 8   PDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADEL 67

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F  M E+  S +  +YN LI+G      +E A+K+ +EM  +  +P  +T+ T++ GLC 
Sbjct: 68  FHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCR 127

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV--KEEMVRDKIEMD 257
             +V EA +   D M      PD   +  L+  L   G+++ A G+    +M   K+  D
Sbjct: 128 MGKVSEAKQFF-DSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPD 186

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y++LI    +  + +E   + K++  +G  P++VTYN+++ G  ++ + + A  +  
Sbjct: 187 LITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFK 246

Query: 318 EMGDKGCKANPISYNVILGGLCKDG 342
           +M D GC  N  +Y+++L G C+ G
Sbjct: 247 KMVDSGCAPNGATYSIVLSGHCRVG 271



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 143/278 (51%), Gaps = 6/278 (2%)

Query: 70  LHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           L++   + R  P +++ CN VI    +A+ ++ A ++ +EMS       V  +N LL+  
Sbjct: 279 LYEEMTEKRFSP-DVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGL 337

Query: 129 LTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
                +D+  ELF  M +   +PD  SY+++++G   + ++ DA  +FD M++R+L P +
Sbjct: 338 CKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDV 397

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           VTF  L+ GLC   ++DEA  L  D+M  +NV PDG    +L+ GLC       A+ + +
Sbjct: 398 VTFNILMDGLCKAGKLDEAKDLL-DVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQ 456

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM-KERG-CKPNSVTYNALISGFCK 305
            MV      D   ++ +++ L + G+  +     K M K  G   P+ VTY  L++   +
Sbjct: 457 YMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIE 516

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               + A     +M   GC  + ++YN ++ GL K G+
Sbjct: 517 AGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGR 554



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 148/299 (49%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y+ +I    R +  DE  ++   +     + P  + + +++    R   ++ A +M
Sbjct: 186 DLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYM-PDTVTYNSILLGLARKSNMDEAEEM 244

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F +M           ++ +L+     G + R  EL++ M EK  SPD    N +I     
Sbjct: 245 FKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCK 304

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +++++DA KV +EM K    P +VT+  L+ GLC    VD+A +L    M      PD  
Sbjct: 305 AKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFS-TMVDNGCAPDIV 363

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++ ++ GLC   ++  A  + + M+  K+  D   ++ L+  L KAG+ +E   +L  M
Sbjct: 364 SYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVM 423

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            E    P+ VT   L+ G C+++  + A  +   M +KG  A+ + +N++L GLC++GK
Sbjct: 424 SEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGK 482



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 80/124 (64%)

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +PD   ++++I GLC  G+++ AL + EEM    +  D   Y+ ++  L +AG+ +E   
Sbjct: 7   EPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADE 66

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +  +M ERGC  N+V YNALI+G CK+E+ E A+ +L+EM  KG + + I+YN IL GLC
Sbjct: 67  LFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLC 126

Query: 340 KDGK 343
           + GK
Sbjct: 127 RMGK 130



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 88/166 (53%), Gaps = 1/166 (0%)

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M ++  +P +VT+ T+I GLC   +V EAL++ E+ M    V PD   +  ++  LC  G
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEE-MTEKGVNPDVATYTIIVDRLCRAG 59

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           ++  A  +  +M+      +   Y++LI+ L K         +L+EM  +G +P+++TYN
Sbjct: 60  KVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYN 119

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ++SG C+      A    D M  +G   + ++YN +L  L K+GK
Sbjct: 120 TILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGK 165


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 162/312 (51%), Gaps = 8/312 (2%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           E+HP    R +    + ++  L  AK  D  ++         R+ P    F  VI    R
Sbjct: 147 ESHP--RHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALR-RRVSPDIYTFNTVISGLCR 203

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE----LFQIMEKYVSPD 151
              L +A  +  ++ ++ +  +V  +N+L++     G    M      L +++E  +SP 
Sbjct: 204 IGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPT 263

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
           A ++ +LI+G   +     A +VF+EM ++ +  ++VT+ +LI GLC E +V+E +KL E
Sbjct: 264 AVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLME 323

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           + M    + P+   F  ++KG C  G ++ A    + M    +E D  IY+ LI    + 
Sbjct: 324 E-MEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRL 382

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G+  +  A+ + M ++G  PN  TYN LI+GF +  D+ +A  +LDEM +KG +A+ ++Y
Sbjct: 383 GKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTY 442

Query: 332 NVILGGLCKDGK 343
           NV++G LC  G+
Sbjct: 443 NVLIGALCCKGE 454



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 154/313 (49%), Gaps = 7/313 (2%)

Query: 34  DTEAHPLKP--FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIG 91
           D +A  L P    YN L  D    K G   M+  +  +L ++  +  I P  + F  +I 
Sbjct: 216 DIKAWGLAPSVATYNSL-IDGYCKKGGAGNMY-HVDMLLKEMV-EAGISPTAVTFGVLIN 272

Query: 92  FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSP 150
            Y +      A+++F+EM    +  +V  +N+L++   + GK++   +L + ME   +SP
Sbjct: 273 GYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSP 332

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           +  ++  ++ G      + DA    D M +R ++P +V +  LI       ++++A+ +K
Sbjct: 333 NEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVK 392

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
           E + +   + P+   +  LI G    G+   A G+ +EM    IE D   Y+ LI AL  
Sbjct: 393 EAMAK-KGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCC 451

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            G   +   +L EM E G +PN +TYN +I GFC + + ++A+ I   M     +AN ++
Sbjct: 452 KGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVT 511

Query: 331 YNVILGGLCKDGK 343
           YNV +   C+ GK
Sbjct: 512 YNVFIKYFCQIGK 524


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 161/321 (50%), Gaps = 41/321 (12%)

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM-SSFNVQMTVKFF 121
           FD ++++L +++ + R++  E  F  V   YG+A L ++A+ +F  M   F  + +VK F
Sbjct: 93  FDSVEKLLSRIRLENRVII-ERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSF 151

Query: 122 NTLLNPKLTCGKLDRMKELFQI-----MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFD 176
           N++LN  +  G   R  E +       M   +SP+  S+N++I      R ++ A +VF 
Sbjct: 152 NSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFR 211

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR--------VYNVKPDG----- 223
            M +R+  P   T+ TL+ GLC E R+DEA+ L +++          +YNV  DG     
Sbjct: 212 GMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKG 271

Query: 224 ---------------------QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
                                  + +LI GLC  G+L  A+ + E MV  K   +   Y 
Sbjct: 272 DLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYG 331

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           +LI+ L K  R  +   +L  M+ERG   N   Y+ LISG  KE   E A ++  +M +K
Sbjct: 332 TLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEK 391

Query: 323 GCKANPISYNVILGGLCKDGK 343
           GCK N + Y+V++ GLC++GK
Sbjct: 392 GCKPNIVVYSVLVDGLCREGK 412



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 150/300 (50%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N L ++L+I  L + +  D   ++   +  + + +P    +C ++    +   ++ A+ +
Sbjct: 186 NGLSFNLVIKALCKLRFVDRAIEVFRGMP-ERKCLPDGYTYCTLMDGLCKEERIDEAVLL 244

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            DEM S     +   +N L++     G L R+ +L   M  K   P+  +YN LIHG  +
Sbjct: 245 LDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCL 304

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM-RVYNVKPDG 223
             +L+ A  + + MV  +  P  VT+GTLI GL  + R  +A++L   +  R Y++  + 
Sbjct: 305 KGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHL--NQ 362

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
            +++ LI GL   G+   A+ +  +M     + +  +YS L+  L + G+ NE   IL  
Sbjct: 363 HIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNR 422

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M   GC PN+ TY++L+ GF K    E A  +  EM   GC  N   Y+V++ GLC  G+
Sbjct: 423 MIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGR 482



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 139/297 (46%), Gaps = 6/297 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y+ +I  L      D+   +L ++   ++ +P ++ +  +I    + R    A+++
Sbjct: 291 NEVTYNTLIHGLCLKGKLDKAVSLLERMV-SSKCIPNDVTYGTLINGLVKQRRATDAVRL 349

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
              M      +    ++ L++     GK +    L++ M EK   P+   Y++L+ G   
Sbjct: 350 LSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCR 409

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +  +A ++ + M+     P   T+ +L+ G       +EA+++ +++ +      +  
Sbjct: 410 EGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKT-GCSRNKF 468

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++ LI GLC VG +  A+ V  +M+   I+ D   YSS+I  L   G  +    +  EM
Sbjct: 469 CYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEM 528

Query: 285 ---KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
              +E   +P+ VTYN L+ G C ++D   A  +L+ M D+GC  + I+ N  L  L
Sbjct: 529 LCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTL 585


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 157/296 (53%), Gaps = 3/296 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y +++  L +        ++L ++  D   VP  + + +++    RAR +  AL +
Sbjct: 225 DVITYTILVDGLCKESKVAAAWEVLREML-DAGCVPNLVTYNSLLHGLCRARRVSDALAL 283

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
             +M+       V  + TL++     G++ D    L  +++K  +PD   YN+LI+G   
Sbjct: 284 MRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCK 343

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + +++++  +    V   ++P +VT+ ++IYGLC   R+DEA +L    ++     PD  
Sbjct: 344 ADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLL-YVKSRGCPPDVI 402

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++++LI GLC  G++  A  + E M  D  + D   YS+LI  L KAGR +E   +L  M
Sbjct: 403 LYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARM 462

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
              G  P+++TYN+LI G C     + A  +++EM    C  + ++YN+++ G+C+
Sbjct: 463 VRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCR 518



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 163/333 (48%), Gaps = 12/333 (3%)

Query: 15  QKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIIT-KLGRAKMFDEMQQILHQL 73
             +P  A +LF++        E  P     YN L   L  T KL RA      Q++L + 
Sbjct: 127 NNEPDRAQELFEHMKS----VECSP-SMVTYNTLLDGLFRTGKLERAMAL--FQEMLDRR 179

Query: 74  KHDT--RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131
            HD   R  P  I +  +I    +A  + +A+++ + M +      V  +  L++     
Sbjct: 180 SHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKE 239

Query: 132 GKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
            K+    E+  ++++    P+  +YN L+HG   +RR+ DA  +  +M  R   P +VT+
Sbjct: 240 SKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTY 299

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
           GTLI GLC   RV +A  +  D++      PD  ++  LI GLC   ++  ++ +    V
Sbjct: 300 GTLIDGLCKVGRVKDACAMLADMID-KGGTPDLMIYNMLINGLCKADQVDESIALLRRAV 358

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
              I+ D   YSS+I  L ++ R +E   +L  +K RGC P+ + Y+ LI G CK    +
Sbjct: 359 SGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVD 418

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            AF + + M   GC A+ ++Y+ ++ GLCK G+
Sbjct: 419 EAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGR 451



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 142/301 (47%), Gaps = 8/301 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  ++    R    D+ Q+   +++    +VP   +   +I    +A+    AL+ F  M
Sbjct: 12  YAALLRGFCRGGEIDQAQRCFDEMRSKN-LVPNVFLCSILIDGLCKAKRSIDALRCFRAM 70

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
               +      +  LL+      +LD+   +   M  +   P+  +YN LI G   +   
Sbjct: 71  QGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEP 130

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM--RVYNV----KPD 222
           + A ++F+ M      P++VT+ TL+ GL    +++ A+ L ++++  R +++     P+
Sbjct: 131 DRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPN 190

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              ++ LI GLC    +S A+ + E M       D   Y+ L+  L K  +      +L+
Sbjct: 191 VITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLR 250

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           EM + GC PN VTYN+L+ G C+      A  ++ +M  +GC  N ++Y  ++ GLCK G
Sbjct: 251 EMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVG 310

Query: 343 K 343
           +
Sbjct: 311 R 311



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 140/281 (49%), Gaps = 9/281 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y+++I  L +A   DE   +L +      I P  + + +VI    R+  L+ A ++
Sbjct: 330 DLMIYNMLINGLCKADQVDESIALLRRAVSGG-IKPDVVTYSSVIYGLCRSNRLDEACRL 388

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
              + S      V  ++TL++     GK+D   +L+++M       D  +Y+ LI G   
Sbjct: 389 LLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCK 448

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R+++A  +   MV+    P+ +T+ +LI GLC    +DEA++L E++ R  N  P   
Sbjct: 449 AGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMER-SNCAPSAV 507

Query: 225 VFASLIKGLCAVGELSLALGVKEE-----MVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            +  LI G+C +  +  A+ + E+     +      +D   YSSLI  L KAGR  E   
Sbjct: 508 TYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALD 567

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDF-EAAFTILDEM 319
             +EM + G  P+ +TY+ L+ G  K +D  E    +LD+M
Sbjct: 568 YFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQM 608



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 88/160 (55%), Gaps = 1/160 (0%)

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
           QP + T+  L+ G C    +D+A +  ++ MR  N+ P+  + + LI GLC       AL
Sbjct: 6   QPDVYTYAALLRGFCRGGEIDQAQRCFDE-MRSKNLVPNVFLCSILIDGLCKAKRSIDAL 64

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
                M    I  D  IY++L+S L+K  R ++  AIL EM++ GC+PN VTYN+LI G 
Sbjct: 65  RCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGL 124

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           CK  + + A  + + M    C  + ++YN +L GL + GK
Sbjct: 125 CKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 164



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 91/198 (45%), Gaps = 8/198 (4%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PD  +Y  L+ G      ++ A + FDEM  + L P +     LI GLC   R  +AL+ 
Sbjct: 7   PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRC 66

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
               M+   +  D  ++ +L+ GL     L  AL +  EM     E +   Y+SLI  L 
Sbjct: 67  FR-AMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLC 125

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK------- 322
           K    +    + + MK   C P+ VTYN L+ G  +    E A  +  EM D+       
Sbjct: 126 KNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDD 185

Query: 323 GCKANPISYNVILGGLCK 340
            C  N I+Y+V++ GLCK
Sbjct: 186 RCSPNVITYSVLIDGLCK 203



 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           C+P+  TY AL+ GFC+  + + A    DEM  K    N    ++++ GLCK
Sbjct: 5   CQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCK 56


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 157/296 (53%), Gaps = 3/296 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y +++  L +        ++L ++  D   VP  + + +++    RAR +  AL +
Sbjct: 147 DVITYTILVDGLCKESKVAAAWEVLREML-DAGCVPNLVTYNSLLHGLCRARRVSDALAL 205

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
             +M+       V  + TL++     G++ D    L  +++K  +PD   YN+LI+G   
Sbjct: 206 MRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCK 265

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + +++++  +    V   ++P +VT+ ++IYGLC   R+DEA +L    ++     PD  
Sbjct: 266 ADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLL-YVKSRGCPPDVI 324

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++++LI GLC  G++  A  + E M  D  + D   YS+LI  L KAGR +E   +L  M
Sbjct: 325 LYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARM 384

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
              G  P+++TYN+LI G C     + A  +++EM    C  + ++YN+++ G+C+
Sbjct: 385 VRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCR 440



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 155/300 (51%), Gaps = 4/300 (1%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           ++++ +++++T L RA   +   +   ++  D R  P  I +  +I    +A  + +A++
Sbjct: 77  HDVISFNILVTGLCRAGKIETALEFFRKM--DDRCSPNVITYSVLIDGLCKANRVSQAVE 134

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCV 163
           + + M +      V  +  L++      K+    E+  ++++    P+  +YN L+HG  
Sbjct: 135 LLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLC 194

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            +RR+ DA  +  +M  R   P +VT+GTLI GLC   RV +A  +  D++      PD 
Sbjct: 195 RARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMID-KGGTPDL 253

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
            ++  LI GLC   ++  ++ +    V   I+ D   YSS+I  L ++ R +E   +L  
Sbjct: 254 MIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLY 313

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +K RGC P+ + Y+ LI G CK    + AF + + M   GC A+ ++Y+ ++ GLCK G+
Sbjct: 314 VKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGR 373



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 85/241 (35%), Positives = 132/241 (54%), Gaps = 2/241 (0%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILI 159
           +RA ++F+ M S     ++  +NTLL+     GKL+R   LFQ M    S D  S+NIL+
Sbjct: 27  DRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDVISFNILV 86

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G   + ++E A + F +M   R  P ++T+  LI GLC   RV +A++L E  M+    
Sbjct: 87  TGLCRAGKIETALEFFRKM-DDRCSPNVITYSVLIDGLCKANRVSQAVELLES-MKARGC 144

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   +  L+ GLC   +++ A  V  EM+      +   Y+SL+  L +A R ++  A
Sbjct: 145 SPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALA 204

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           ++++M  RGC PN VTY  LI G CK    + A  +L +M DKG   + + YN+++ GLC
Sbjct: 205 LMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLC 264

Query: 340 K 340
           K
Sbjct: 265 K 265



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 107/193 (55%), Gaps = 7/193 (3%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P+  +YN LI G   +   + A ++F+ M      P++VT+ TL+ GL    +++ A+ L
Sbjct: 8   PNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMAL 67

Query: 210 KEDIM--RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            ++++  R ++V      F  L+ GLC  G++  AL    +M  D+   +   YS LI  
Sbjct: 68  FQEMLDRRSHDVIS----FNILVTGLCRAGKIETALEFFRKM-DDRCSPNVITYSVLIDG 122

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L KA R ++   +L+ MK RGC P+ +TY  L+ G CKE    AA+ +L EM D GC  N
Sbjct: 123 LCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPN 182

Query: 328 PISYNVILGGLCK 340
            ++YN +L GLC+
Sbjct: 183 LVTYNSLLHGLCR 195



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 130/277 (46%), Gaps = 5/277 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L +     +   +L  +  D    P  +I+  +I    +A  ++ ++ +
Sbjct: 217 NVVTYGTLIDGLCKVGRVKDACAMLADMI-DKGGTPDLMIYNMLINGLCKADQVDESIAL 275

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM-KELFQIMEKYVSPDACSYNILIHGCVV 164
                S  ++  V  +++++       +LD   + L  +  +   PD   Y+ LI G   
Sbjct: 276 LRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCK 335

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + ++++A+ +++ M        +VT+ TLI GLC   RVDEA  L   ++R+    P   
Sbjct: 336 AGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRM-GTPPSTM 394

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA-ILKE 283
            + SLIKGLC +  L  A+ + EEM R      A  Y+ LI  + +  R +       +E
Sbjct: 395 TYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQE 454

Query: 284 MKERGCKPNSVTYNALISGFCKEEDF-EAAFTILDEM 319
           M + G  P+ +TY+ L+ G  K +D  E    +LD+M
Sbjct: 455 MIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQM 491



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 33/163 (20%)

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           MR +  +P+   + SLI GLC   E   A  + E M   +       Y++L+  LF+ G+
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 274 KNEFPAILKEMKER---------------------------------GCKPNSVTYNALI 300
                A+ +EM +R                                  C PN +TY+ LI
Sbjct: 61  LERAMALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLI 120

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            G CK      A  +L+ M  +GC  + I+Y +++ GLCK+ K
Sbjct: 121 DGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESK 163


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 162/299 (54%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y +++  L +    D    +L++++   ++ P  +I+  +I    + + ++ AL +
Sbjct: 220 DLVTYGVVVNGLCKRGDTDLAFILLNKMEQG-KLEPGVLIYTTIIDGLCKNKHMDDALNL 278

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           F EM +  ++  V  +++L++     G+  D  + L  ++E+ ++PD  +++ LI   V 
Sbjct: 279 FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 338

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L +A K++DEMVKR + P++VT+ +LI G C+  R+DEA ++ E  M   +  PD  
Sbjct: 339 EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE-FMVSKHCFPDVV 397

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +++LIKG C    +   + +  EM +  +  +   Y++LI  LF+AG  +    I KEM
Sbjct: 398 SYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEM 457

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  PN +TYN L+ G CK    E A  + + +     +    +YN+++ G+CK GK
Sbjct: 458 VSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 516



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 164/323 (50%), Gaps = 13/323 (4%)

Query: 21  ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
           AL LFK       + E   ++P   N++ Y  +I+ L     + +  ++L  +  + +I 
Sbjct: 275 ALNLFK-------EMETKGIRP---NVVTYSSLISCLCNYGRWSDASRLLSDMI-ERKIN 323

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    F  +I  + +   L  A +++DEM   ++  ++  +++L+N      +LD  K++
Sbjct: 324 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 383

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ M  K+  PD  SY+ LI G   ++R+++  ++F EM +R L    VT+ TLI GL  
Sbjct: 384 FEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQ 443

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
               D A ++ ++ M    V P+   + +L+ GLC  G+L  A+ V E + R K+E    
Sbjct: 444 AGDCDMAQEIFKE-MVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIY 502

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+ +I  + KAG+  +   +   +  +G KP+ V YN +ISGFC++   E A  +  EM
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 562

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
            + G   N   YN ++    +DG
Sbjct: 563 KEDGTLPNSGCYNTLIRARLRDG 585



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 134/261 (51%), Gaps = 2/261 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +   +++  Y  ++ +  A+ + D+M     Q     FNTL++      K      L
Sbjct: 149 PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVAL 208

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
             +++ K   PD  +Y ++++G       + A+ + ++M + +L+P ++ + T+I GLC 
Sbjct: 209 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCK 268

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
              +D+AL L ++ M    ++P+   ++SLI  LC  G  S A  +  +M+  KI  D  
Sbjct: 269 NKHMDDALNLFKE-METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 327

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            +S+LI A  K G+  E   +  EM +R   P+ VTY++LI+GFC  +  + A  + + M
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 387

Query: 320 GDKGCKANPISYNVILGGLCK 340
             K C  + +SY+ ++ G CK
Sbjct: 388 VSKHCFPDVVSYSTLIKGFCK 408



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 128/266 (48%), Gaps = 4/266 (1%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F  +I G +   +  E A+ + D M +   Q  +  +  ++N     G  D    
Sbjct: 184 PNTVTFNTLIHGLFLHNKASE-AVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFI 242

Query: 140 LFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L   ME+  + P    Y  +I G   ++ ++DA  +F EM  + ++P +VT+ +LI  LC
Sbjct: 243 LLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLC 302

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              R  +A +L  D++    + PD   F++LI      G+L  A  + +EMV+  I+   
Sbjct: 303 NYGRWSDASRLLSDMIE-RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 361

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             YSSLI+      R +E   + + M  + C P+ V+Y+ LI GFCK +  +    +  E
Sbjct: 362 VTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFRE 421

Query: 319 MGDKGCKANPISYNVILGGLCKDGKC 344
           M  +G   N ++Y  ++ GL + G C
Sbjct: 422 MSQRGLVGNTVTYTTLIQGLFQAGDC 447



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 1/176 (0%)

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           +L+DA  +F EMVK R  P+++ F  L+  +    + D  + L E  M+   +  +   +
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQ-MQNLGMPHNHYTY 119

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
           + LI   C   +L LAL V  +M++   E +    SSL++    + R +E  A++ +M  
Sbjct: 120 SILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFV 179

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            G +PN+VT+N LI G         A  ++D M  KGC+ + ++Y V++ GLCK G
Sbjct: 180 TGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRG 235


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 156/300 (52%), Gaps = 6/300 (2%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ + + Y  ++  L  AK +++++++  ++  +   +P E+ F  ++ F+ R  ++ERA
Sbjct: 246 FQPDTVSYTTVLKGLCAAKRWEDVEELFAEM-MEKNCMPNEVTFDMLVRFFCRGGMVERA 304

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
           +Q+ ++MS           N ++N     G++D   +    M  Y  SPD  SY  ++ G
Sbjct: 305 IQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKG 364

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              + R EDA ++  EMV++   P  VTF T I  LC +  +++A  L E  M  +  + 
Sbjct: 365 LCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQ-MSEHGCEV 423

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   + +L+ G C  G +  AL +   M     + +   Y++L++ L  A R +    +L
Sbjct: 424 NIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAELL 480

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM ++ C PN VT+N L+S FC++   + A  ++++M + GC  N I+YN +L G+  D
Sbjct: 481 AEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITND 540



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 139/306 (45%), Gaps = 6/306 (1%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           P+ P  Y    Y  II  L       E   +L  + H     P  + +  ++    ++  
Sbjct: 140 PVAPDAYT---YTPIIRGLCDRGRVGEALSLLDDMLHRG-CQPSVVTYTVLLEAVCKSTG 195

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
             +A+++ DEM +      +  +N ++N     G++D  +E    +  Y   PD  SY  
Sbjct: 196 FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTT 255

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           ++ G   ++R ED  ++F EM+++   P  VTF  L+   C    V+ A+++ E  M  +
Sbjct: 256 VLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQ-MSGH 314

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
               +  +   +I  +C  G +  A      M       D   Y++++  L +A R  + 
Sbjct: 315 GCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDA 374

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +LKEM  + C PN VT+N  I   C++   E A  ++++M + GC+ N ++YN ++ G
Sbjct: 375 KELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNG 434

Query: 338 LCKDGK 343
            C  G+
Sbjct: 435 FCVQGR 440



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 144/296 (48%), Gaps = 4/296 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           + + Y  ++  L RA+ +++ +++L ++       P E+ F   I    +  L+E+A  +
Sbjct: 354 DTISYTTVLKGLCRAERWEDAKELLKEMVRKN-CPPNEVTFNTFICILCQKGLIEQATML 412

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
            ++MS    ++ +  +N L+N     G++D   ELF  M     P+  +Y  L+ G   +
Sbjct: 413 IEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP--CKPNTITYTTLLTGLCNA 470

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            RL+ A ++  EM+++   P +VTF  L+   C +  +DEA++L E +M  +   P+   
Sbjct: 471 ERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMME-HGCTPNLIT 529

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + +L+ G+        AL +   +V + +  D   YSS+I  L +  R  E   +   ++
Sbjct: 530 YNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQ 589

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           + G +P +V YN ++   CK  + + A      M   GC  N ++Y  ++ GL  +
Sbjct: 590 DLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANE 645



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 3/223 (1%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           +NTL+      G+LD  + L   M   V+PDA +Y  +I G     R+ +A  + D+M+ 
Sbjct: 116 YNTLVAGYCRYGQLDAARRLIASMP--VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLH 173

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           R  QP++VT+  L+  +C      +A+++ ++ MR     P+   +  +I G+C  G + 
Sbjct: 174 RGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDE-MRAKGCTPNIVTYNVIINGMCREGRVD 232

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A      +     + D   Y++++  L  A R  +   +  EM E+ C PN VT++ L+
Sbjct: 233 DAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLV 292

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             FC+    E A  +L++M   GC AN    N+++  +CK G+
Sbjct: 293 RFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGR 335



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 144/296 (48%), Gaps = 6/296 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y +++  + ++  F +  ++L +++      P  + +  +I    R   ++ A + 
Sbjct: 179 SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKG-CTPNIVTYNVIINGMCREGRVDDAREF 237

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            + +SS+  Q     + T+L       + + ++ELF ++MEK   P+  ++++L+     
Sbjct: 238 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCR 297

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +E A +V ++M              +I  +C + RVD+A +   + M  Y   PD  
Sbjct: 298 GGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNN-MGSYGCSPDTI 356

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +++KGLC       A  + +EMVR     +   +++ I  L + G   +   ++++M
Sbjct: 357 SYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQM 416

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            E GC+ N VTYNAL++GFC +   ++A  +   M    CK N I+Y  +L GLC 
Sbjct: 417 SEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCN 469



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 4/176 (2%)

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           L +A ++ D    R   P +     LI  LC   R  +A ++     R      D   + 
Sbjct: 59  LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAER-SGTAVDVFAYN 117

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +L+ G C  G+L  A  +   M    +  DA  Y+ +I  L   GR  E  ++L +M  R
Sbjct: 118 TLVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHR 174

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           GC+P+ VTY  L+   CK   F  A  +LDEM  KGC  N ++YNVI+ G+C++G+
Sbjct: 175 GCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGR 230



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 99/209 (47%), Gaps = 8/209 (3%)

Query: 135 DRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           D + E  +++++  S    PD      LI       R  DA +V     +      +  +
Sbjct: 57  DDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAY 116

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
            TL+ G C   ++D A +L   +     V PD   +  +I+GLC  G +  AL + ++M+
Sbjct: 117 NTLVAGYCRYGQLDAARRLIASM----PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDML 172

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
               +     Y+ L+ A+ K+    +   +L EM+ +GC PN VTYN +I+G C+E   +
Sbjct: 173 HRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 232

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLC 339
            A   L+ +   G + + +SY  +L GLC
Sbjct: 233 DAREFLNRLSSYGFQPDTVSYTTVLKGLC 261


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 155/298 (52%), Gaps = 3/298 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           + N+   +++I  L + +  +  +  L  ++ +  + P  + +  +I  Y R  LLE A 
Sbjct: 94  QVNVYTLNIMINALCKNQKIENTKSFLSDME-EKGVFPDVVTYNTLINAYCRQGLLEEAF 152

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
           ++ D MS   ++  V  +N ++N     GK  R K +   M K  +SPD  +YNIL+  C
Sbjct: 153 ELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVEC 212

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             +  + DA ++FDEM  + + P LV+F  LI  L     +D+ALK   D M+   + PD
Sbjct: 213 CRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRD-MKNAGLAPD 271

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
             ++  LI G C  G +S AL V++EM+     +D   Y+++++ L K    +E   +  
Sbjct: 272 NVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFT 331

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           EM ERG  P+  T+  LI+G+ K+ +   A T+ + M  +  K + ++YN ++ G CK
Sbjct: 332 EMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCK 389



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 157/301 (52%), Gaps = 7/301 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ +  +I  L +    D+  +    +K+   + P  +I+  +IG + R  ++  AL++
Sbjct: 236 DLVSFSALIGLLSKNGCLDQALKYFRDMKN-AGLAPDNVIYTILIGGFCRNGVMSEALKV 294

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            DEM      + V  +NT+LN       L    ELF ++ E+ V PD  ++  LI+G   
Sbjct: 295 RDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSK 354

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM--RVYNVKPD 222
              +  A  +F+ M++R L+P +VT+ TLI G C    +++  +L  D++  R+Y   P+
Sbjct: 355 DGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIY---PN 411

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              +  LI G C +G +S A  + +EMV    E      ++++    +AG   +    L 
Sbjct: 412 HISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLS 471

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            M  +G  P+ +TYN LI+GF KEE+ + AF ++++M + G   + I+YNVIL G  + G
Sbjct: 472 NMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQG 531

Query: 343 K 343
           +
Sbjct: 532 R 532



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 146/298 (48%), Gaps = 5/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQ 104
           N L +DL++    +A+   E  +    LK     V   I  CN ++G   +   ++ A +
Sbjct: 26  NPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVS--INACNSLLGGLVKVGWVDLAWE 83

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
           ++ E+    VQ+ V   N ++N      K++  K     ME K V PD  +YN LI+   
Sbjct: 84  IYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYC 143

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
               LE+A+++ D M  + L+P + T+  +I GLC   +   A  + ++++++  + PD 
Sbjct: 144 RQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI-GMSPDT 202

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             +  L+   C    +  A  + +EM    +  D   +S+LI  L K G  ++     ++
Sbjct: 203 ATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRD 262

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           MK  G  P++V Y  LI GFC+      A  + DEM ++GC  + ++YN IL GLCK+
Sbjct: 263 MKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKE 320



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 146/281 (51%), Gaps = 7/281 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ I+  L + KM  E  ++  ++  +  + P    F  +I  Y +   + +A+ +
Sbjct: 306 DVVTYNTILNGLCKEKMLSEADELFTEMT-ERGVFPDFYTFTTLINGYSKDGNMNKAVTL 364

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           F+ M   N++  V  +NTL++      +++++ EL+  ++ + + P+  SY ILI+G   
Sbjct: 365 FEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCN 424

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--MRVYNVKPD 222
              + +A++++DEMV++  + T++T  T++ G C   R   A+K  E +  M +  + PD
Sbjct: 425 MGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYC---RAGNAVKADEFLSNMLLKGIVPD 481

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
           G  + +LI G      +  A  +  +M    +  D   Y+ +++   + GR  E   I+ 
Sbjct: 482 GITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIML 541

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +M ERG  P+  TY +LI+G   + + + AF + DEM  +G
Sbjct: 542 KMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRG 582



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)

Query: 183 LQPTLVTFGT-----LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA-----SLIKG 232
           ++  ++T+G      L++ L +   V +A KL+E       +K  G   +     SL+ G
Sbjct: 13  VESLVLTYGNCGSNPLVFDLLVRTYV-QARKLREGCEAFRVLKSKGLCVSINACNSLLGG 71

Query: 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
           L  VG + LA  + +E+VR  ++++    + +I+AL K  +     + L +M+E+G  P+
Sbjct: 72  LVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPD 131

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            VTYN LI+ +C++   E AF ++D M  KG K    +YN I+ GLCK GK
Sbjct: 132 VVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGK 182



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 7/111 (6%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           IVP  I +  +I  + +   ++RA  + ++M +  +   V  +N +LN     G   RM+
Sbjct: 478 IVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQG---RMQ 534

Query: 139 E----LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
           E    + +++E+ V+PD  +Y  LI+G V    L++A++V DEM++R   P
Sbjct: 535 EAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 585


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 167/305 (54%), Gaps = 13/305 (4%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLL 99
           + F  +++ Y+ +I    +A   DE Q+IL ++  ++ +VP  + + +++ G     R+ 
Sbjct: 149 RGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSES-LVPDVVTYNSLVNGLCKNGRVD 207

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV----SPDACSY 155
           E  + + D+  S NV      ++TL++    C +L R++   Q++EK V     PD  SY
Sbjct: 208 EARMLIVDKGFSPNVIT----YSTLISG--LCRELRRLESARQLLEKMVLNGCKPDIVSY 261

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N LIHG    + + +A K+F  ++++  +P + T+  LI GL  E RV+EA +L   +++
Sbjct: 262 NALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVK 321

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
            + ++PD   +   I GLC  G +  AL + ++M       D   ++++I+ L K  R +
Sbjct: 322 -HGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVD 380

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E   +L  M+ +GC PN++++N LI G C+   ++ A T   EM  +G K   ++YN+++
Sbjct: 381 EAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILV 440

Query: 336 GGLCK 340
            GLCK
Sbjct: 441 DGLCK 445



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%)

Query: 43  FRYNLLHYDLIITKL-GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLER 101
           F  N + Y+ +++ L    +M D   Q L++        P  + +  ++  + +   L+ 
Sbjct: 81  FWPNRITYNALLSGLCNGGRMSD--AQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDE 138

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIH 160
           AL++FD          V  +N L+N      KLD  + + Q M  + + PD  +YN L++
Sbjct: 139 ALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVN 198

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR------------------ 202
           G   + R+++A  +   +V +   P ++T+ TLI GLC ELR                  
Sbjct: 199 GLCKNGRVDEARML---IVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCK 255

Query: 203 ------------------VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
                             V EALKL   ++R    +P+   +  LI GL     ++ A  
Sbjct: 256 PDIVSYNALIHGLAREQGVSEALKLFGSVLR-QGYEPEVPTYNILIDGLLKEDRVNEAFE 314

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           +   +V+  +E DA  Y+  I  L KAGR  +   +LK+M E+GC P+ V++NA+I+G C
Sbjct: 315 LFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLC 374

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           KE+  + A  +L  M  KGC  N IS+N ++ G C+ GK
Sbjct: 375 KEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGK 413



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 157/343 (45%), Gaps = 48/343 (13%)

Query: 41  KPFRYNLLHYDLIITKLGRA-KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           K F  N++ Y  +I+ L R  +  +  +Q+L ++  +    P  + +  +I    R + +
Sbjct: 216 KGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNG-CKPDIVSYNALIHGLAREQGV 274

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV----SPDACSY 155
             AL++F  +     +  V  +N L++  L   K DR+ E F++    V     PDA +Y
Sbjct: 275 SEALKLFGSVLRQGYEPEVPTYNILIDGLL---KEDRVNEAFELFSGLVKHGLEPDAITY 331

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
            + I G   + R+EDA  +  +M ++   P +V+   +I GLC E RVDEA  L    M 
Sbjct: 332 TVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSG-ME 390

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE-------------------- 255
                P+   F +LI G C  G+   A+   +EM++  ++                    
Sbjct: 391 AKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEG 450

Query: 256 --------MDAGI----------YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
                    DA I          YS+LI  L KAG+ ++   +L  M+ +GC PN  TYN
Sbjct: 451 RIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYN 510

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +LISG C  +  + A  +   M +KGC  + I+Y  I+  LCK
Sbjct: 511 SLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCK 553



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 142/295 (48%), Gaps = 8/295 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDE 108
           Y+++I  L +    +E  ++   L KH   + P  I +   I    +A  +E AL M  +
Sbjct: 296 YNILIDGLLKEDRVNEAFELFSGLVKHG--LEPDAITYTVFIDGLCKAGRVEDALLMLKD 353

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRR 167
           M        V   N ++N      ++D  + L   ME K  SP+A S+N LI G   + +
Sbjct: 354 MDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGK 413

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC---LELRVDEALKLKEDIMRVYNVKPDGQ 224
            + A   F EM+KR ++PT+VT+  L+ GLC    E R+ EA+ L + ++    V PD  
Sbjct: 414 WKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRV-PDVV 472

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +++LI GL   G+L  A  +   M       +   Y+SLIS L    + +E   +   M
Sbjct: 473 TYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAM 532

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
            E+GC P+++TY  +IS  CK+E  + A  + D   + G       Y  ++ GLC
Sbjct: 533 VEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLC 587



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 110/207 (53%), Gaps = 2/207 (0%)

Query: 137 MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           M  ++  + +  SPDA +  IL+   + S ++E A +  ++++ + L   + TF   I G
Sbjct: 1   MHTVYDKLVRIYSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGL-CDISTFNIYISG 59

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC   R+ +A  +  D MR +   P+   + +L+ GLC  G +S A  + E M++     
Sbjct: 60  LCRASRIGDAQTVF-DGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSP 118

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           D   Y++L+    K G+ +E   I     +RG  P+ VTYNALI+GFCK +  + A  IL
Sbjct: 119 DVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRIL 178

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
             M  +    + ++YN ++ GLCK+G+
Sbjct: 179 QRMVSESLVPDVVTYNSLVNGLCKNGR 205



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 130/283 (45%), Gaps = 9/283 (3%)

Query: 38  HPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           H L+P   + + Y + I  L +A   ++   +L  +  +   VP  +    VI    + +
Sbjct: 322 HGLEP---DAITYTVFIDGLCKAGRVEDALLMLKDM-DEKGCVPDVVSHNAVINGLCKEK 377

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYN 156
            ++ A  +   M +         FNTL+  +   GK  +    F +++++ V P   +YN
Sbjct: 378 RVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYN 437

Query: 157 ILIHGCVVSR---RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           IL+ G   +R   R+++A  +FD M+++   P +VT+  LI GL    ++D+A +L    
Sbjct: 438 ILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLL-GA 496

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M      P+   + SLI GLC + ++  AL +   MV      D   Y ++ISAL K   
Sbjct: 497 MEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEM 556

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
            ++  A+     E G  P S  Y +LI G C     + A  +L
Sbjct: 557 VDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLL 599



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 118/241 (48%), Gaps = 6/241 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ ++ +I  L + K  DE + +L  ++      P  I F  +I    RA   ++A+  
Sbjct: 362 DVVSHNAVINGLCKEKRVDEAEVLLSGMEAKG-CSPNAISFNTLICGQCRAGKWKKAMTT 420

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE---LFQIM-EKYVSPDACSYNILIHG 161
           F EM    V+ TV  +N L++      +  R+KE   LF  M EK   PD  +Y+ LI G
Sbjct: 421 FKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDG 480

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              + +L+DA ++   M  +   P + T+ +LI GLC   +VDEAL+L   ++    V P
Sbjct: 481 LGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCV-P 539

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + ++I  LC    +  AL + +  +   +   +G+Y SLI  L    R +E   +L
Sbjct: 540 DTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLL 599

Query: 282 K 282
           +
Sbjct: 600 Q 600


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 150/289 (51%), Gaps = 9/289 (3%)

Query: 56  KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ 115
           +LG+ +   ++ +IL      +  VP  I +  +I  Y +A  +  AL + D MS   V 
Sbjct: 149 RLGKTRKAAKILEILE----GSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VS 201

Query: 116 MTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKV 174
             V  +NT+L      GKL + M+ L +++++   PD  +Y ILI        +  A K+
Sbjct: 202 PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKL 261

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
            DEM  R   P +VT+  L+ G+C E R+DEA+K   D M     +P+      +++ +C
Sbjct: 262 LDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLND-MPSSGCQPNVITHNIILRSMC 320

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
           + G    A  +  +M+R         ++ LI+ L + G       IL++M + GC+PNS+
Sbjct: 321 STGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSL 380

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +YN L+ GFCKE+  + A   L+ M  +GC  + ++YN +L  LCKDGK
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGK 429



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 147/300 (49%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKL-GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +++ Y+ I+  L    K+   M+ +   L+ D    P  I +  +I    R   +  A++
Sbjct: 203 DVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDC--YPDVITYTILIEATCRDSGVGHAMK 260

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCV 163
           + DEM        V  +N L+N     G+LD  +K L  +      P+  ++NI++    
Sbjct: 261 LLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMC 320

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            + R  DA K+  +M+++   P++VTF  LI  LC +  +  A+ + E  M  +  +P+ 
Sbjct: 321 STGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEK-MPQHGCQPNS 379

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             +  L+ G C   ++  A+   E MV      D   Y+++++AL K G+  +   IL +
Sbjct: 380 LSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ 439

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  +GC P  +TYN +I G  K      A  +LDEM  K  K + I+Y+ ++GGL ++GK
Sbjct: 440 LSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK 499



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 150/300 (50%), Gaps = 7/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERAL 103
           +++ Y++++  + +    DE  + L+ +          +I  N+I        R ++ A 
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSG--CQPNVITHNIILRSMCSTGRWMD-AE 329

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
           ++  +M       +V  FN L+N     G L R  ++ + M ++   P++ SYN L+HG 
Sbjct: 330 KLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGF 389

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
              ++++ A +  + MV R   P +VT+ T++  LC + +V++A+++    +      P 
Sbjct: 390 CKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ-LSSKGCSPV 448

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + ++I GL   G+   A+ + +EM    ++ D   YSSL+  L + G+ +E      
Sbjct: 449 LITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFH 508

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           E +  G +PN+VT+N+++ G CK    + A   L  M ++GCK N  SY +++ GL  +G
Sbjct: 509 EFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEG 568



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 145/292 (49%), Gaps = 6/292 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           ND  +   +P   N++ +++I+  +     + + +++L  +       P  + F  +I F
Sbjct: 298 NDMPSSGCQP---NVITHNIILRSMCSTGRWMDAEKLLADMLRKG-FSPSVVTFNILINF 353

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPD 151
             R  LL RA+ + ++M     Q     +N LL+      K+DR  E  + M  +   PD
Sbjct: 354 LCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPD 413

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +YN ++       ++EDA ++ +++  +   P L+T+ T+I GL    +  +A+KL +
Sbjct: 414 IVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLD 473

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           + MR  ++KPD   ++SL+ GL   G++  A+    E  R  I  +A  ++S++  L K+
Sbjct: 474 E-MRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKS 532

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
            + +     L  M  RGCKPN  +Y  LI G   E   + A  +L+E+ +KG
Sbjct: 533 RQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKG 584



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 105/211 (49%), Gaps = 8/211 (3%)

Query: 137 MKELFQIMEKYV----SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           ++E F+ +E  V     PD      LI G     +   A K+ + +      P ++T+  
Sbjct: 118 LEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNV 177

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           +I G C    ++ AL     ++   +V PD   + ++++ LC  G+L  A+ V + M++ 
Sbjct: 178 MISGYCKAGEINNALS----VLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQR 233

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
               D   Y+ LI A  +         +L EM++RGC P+ VTYN L++G CKE   + A
Sbjct: 234 DCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEA 293

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              L++M   GC+ N I++N+IL  +C  G+
Sbjct: 294 IKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 36/76 (47%)

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           + + G   E    L+ M   G  P+ +    LI GFC+      A  IL+ +   G   +
Sbjct: 112 MVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPD 171

Query: 328 PISYNVILGGLCKDGK 343
            I+YNV++ G CK G+
Sbjct: 172 VITYNVMISGYCKAGE 187


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 162/307 (52%), Gaps = 13/307 (4%)

Query: 43  FRYNLLHYDLIIT---KLGRAKM-FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           F ++ + Y  +I    K+G  +   D +Q++   L     + P  +++  +I    + +L
Sbjct: 186 FHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNL-----VQPNVVMYNTIIDSMCKVKL 240

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDACSYN 156
           +  A  +F EM S  +   V  ++ L++     GKL+   +LF   I+E  + PD  ++N
Sbjct: 241 VNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILEN-IKPDVYTFN 299

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           IL++      ++++   VFD M+K+ ++P  VT+ +L+ G CL   V++A K   + M  
Sbjct: 300 ILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKA-KSIFNTMAQ 358

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             V PD Q ++ +I G C + +   A+ + +EM R  I  D   YSSLI  L K+GR + 
Sbjct: 359 GGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISY 418

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              ++ +M +RG  P   TYN+++   CK    + A  +L ++ DKG + N  +Y++++ 
Sbjct: 419 ALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIK 478

Query: 337 GLCKDGK 343
           GLC+ GK
Sbjct: 479 GLCQSGK 485



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 155/298 (52%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ II  + + K+ +E   +  ++     I P  + +  +I  +     L  A+ +
Sbjct: 224 NVVMYNTIIDSMCKVKLVNEAFDLFSEMI-SKGISPDVVTYSALISGFCILGKLNDAIDL 282

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           F++M   N++  V  FN L+N     GK+   K +F +M K  + P+  +YN L+ G  +
Sbjct: 283 FNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCL 342

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            + +  A  +F+ M +  + P + ++  +I G C   + DEA+ L +++ R  N+ PD  
Sbjct: 343 VKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHR-KNIIPDVV 401

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++SLI GL   G +S AL + ++M    +      Y+S++ AL K  + ++  A+L ++
Sbjct: 402 TYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKL 461

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           K++G +PN  TY+ LI G C+    E A  + + +  KG   N  +Y +++ G C +G
Sbjct: 462 KDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEG 519



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 131/253 (51%), Gaps = 2/253 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + + +++  Y   + + +A  +F+ M+   V   ++ ++ ++N      K D   
Sbjct: 326 IKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAM 385

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            LF+ M  K + PD  +Y+ LI G   S R+  A ++ D+M  R + PT+ T+ +++  L
Sbjct: 386 NLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDAL 445

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C   +VD+A+ L    ++   ++P+   ++ LIKGLC  G+L  A  V E ++     ++
Sbjct: 446 CKIHQVDKAIALLTK-LKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLN 504

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+ +I      G  NE  A+L +M++ GC P++ TY  +I    K+++ + A  +L 
Sbjct: 505 VDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLR 564

Query: 318 EMGDKGCKANPIS 330
           EM  +G +   I+
Sbjct: 565 EMIARGVRPRQIA 577



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 2/211 (0%)

Query: 134 LDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           +D    LF +++ +  +P A  +N ++   V S+       +  +M  R ++P LV    
Sbjct: 66  VDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 125

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           LI   C    +  A  +   I+++  V PD   F +LIKGLC  G++  A    +++V  
Sbjct: 126 LINCFCQLGLIPFAFSVFAKILKMGYV-PDTITFTTLIKGLCLKGQIQQAFLFHDKVVAL 184

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
               D   Y +LI  L K G       +L+ +     +PN V YN +I   CK +    A
Sbjct: 185 GFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEA 244

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           F +  EM  KG   + ++Y+ ++ G C  GK
Sbjct: 245 FDLFSEMISKGISPDVVTYSALISGFCILGK 275


>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Brachypodium distachyon]
          Length = 746

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 150/277 (54%), Gaps = 3/277 (1%)

Query: 68  QILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127
           +++H+     ++VP +  +  V+     A  ++ A+ +  EM    V +  + FN +L  
Sbjct: 299 RVVHRSIPAWKLVPDKFTYSTVVSALADAGRVDDAVALVHEMVVDGV-VAAEAFNPVLGA 357

Query: 128 KLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
            L  G +    +LF  M+ K  +P A +YN+L+HG ++  R + A  V   M +  + P 
Sbjct: 358 MLRTGDVTGAAKLFSFMQLKGCAPSAATYNVLLHGLLLCGRAKAAMGVMRRMERAEVVPG 417

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
           ++T+G ++ GL    R+++A K+ E+ MR   + P+  VF+ +I G C +GE+  A  V 
Sbjct: 418 VMTYGAVVDGLVRCGRLEDACKVIEE-MRSKGLVPNEFVFSPVITGFCKLGEVDRASRVW 476

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           + MV   I+ +  +YS++I  L + G+  E   + +EM E  C PN +TY++++ G+ + 
Sbjct: 477 DTMVAAGIKPNVVLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQI 536

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            D   A +  ++M   GC  N ++Y+V++ GLC  G+
Sbjct: 537 GDSSQALSFWEDMLRIGCTPNAVTYSVLINGLCNVGR 573



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 142/294 (48%), Gaps = 4/294 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +++ L  A   D+   ++H++  D  +  +   F  V+G   R   +  A ++F  M
Sbjct: 317 YSTVVSALADAGRVDDAVALVHEMVVDGVVAAEA--FNPVLGAMLRTGDVTGAAKLFSFM 374

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
                  +   +N LL+  L CG+      + + ME+  V P   +Y  ++ G V   RL
Sbjct: 375 QLKGCAPSAATYNVLLHGLLLCGRAKAAMGVMRRMERAEVVPGVMTYGAVVDGLVRCGRL 434

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           EDA KV +EM  + L P    F  +I G C    VD A ++  D M    +KP+  ++++
Sbjct: 435 EDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRV-WDTMVAAGIKPNVVLYSA 493

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I GL   G+++ A  +  EM+  K   +   YSS++   F+ G  ++  +  ++M   G
Sbjct: 494 MIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGDSSQALSFWEDMLRIG 553

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           C PN+VTY+ LI+G C     + A  +   M  +GC  + I+Y  ++ G C  G
Sbjct: 554 CTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRGCVPDTIAYTSMIKGFCVSG 607



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/268 (19%), Positives = 116/268 (43%), Gaps = 37/268 (13%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            ++ Y  ++  L R    ++  +++ +++    +VP E +F  VI  + +   ++RA ++
Sbjct: 417 GVMTYGAVVDGLVRCGRLEDACKVIEEMRSKG-LVPNEFVFSPVITGFCKLGEVDRASRV 475

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY------------------ 147
           +D M +  ++  V  ++ +++    CGK+   + LF+ M +                   
Sbjct: 476 WDTMVAAGIKPNVVLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQ 535

Query: 148 ------------------VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
                              +P+A +Y++LI+G     R +DA  V+  M+ R   P  + 
Sbjct: 536 IGDSSQALSFWEDMLRIGCTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRGCVPDTIA 595

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           + ++I G C+   VD  L+L  D++   +  PD   +  L+ GL    +L  A+ +  +M
Sbjct: 596 YTSMIKGFCVSGMVDAGLRLFYDMLARGDTHPDVICYNVLLDGLLRAKDLPRAMDLLNQM 655

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEF 277
           +    + D    ++ +  +    +  EF
Sbjct: 656 LDQACDPDTVTCNTFLREIEVGQKGQEF 683



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 86/178 (48%), Gaps = 10/178 (5%)

Query: 175 FDEMVKR--RLQPTLVTFGTLIYGLCL-------ELRVDEALKLKEDIMRVYNVKPDGQV 225
           F   ++R  RL PTL++F  L+  +C        +L ++ AL++    +  + + PD   
Sbjct: 257 FSHSLRRFTRLAPTLLSFNLLLKCVCSSLVPRNHQLYLELALRVVHRSIPAWKLVPDKFT 316

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           +++++  L   G +  A+ +  EMV D + + A  ++ ++ A+ + G       +   M+
Sbjct: 317 YSTVVSALADAGRVDDAVALVHEMVVDGV-VAAEAFNPVLGAMLRTGDVTGAAKLFSFMQ 375

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +GC P++ TYN L+ G       +AA  ++  M         ++Y  ++ GL + G+
Sbjct: 376 LKGCAPSAATYNVLLHGLLLCGRAKAAMGVMRRMERAEVVPGVMTYGAVVDGLVRCGR 433


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 130/261 (49%), Gaps = 2/261 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMKE 139
           P  + F  ++    + +     L +  +M SF +   V     ++N      ++D     
Sbjct: 43  PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSA 102

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L +I++    PDA ++  LI G  V  ++ +A  +FD+M+    QP +VT+GTLI GLC 
Sbjct: 103 LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 162

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           + +V EA  +  + M    + P+   + SLI GLC + E      +  EMV  KI  D  
Sbjct: 163 DRQVTEAFNIFSE-MITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVF 221

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             ++++ AL K G   E   ++  M  RG +PN VTYNAL+ G C   + + A  + D M
Sbjct: 222 TLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTM 281

Query: 320 GDKGCKANPISYNVILGGLCK 340
             K C AN ISYN ++ G CK
Sbjct: 282 VHKDCVANVISYNTLINGYCK 302



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 143/293 (48%), Gaps = 3/293 (1%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS 110
           + ++  L +  M  E   ++  + H   + P  + +  ++  +     ++ A+++FD M 
Sbjct: 224 NTVVDALCKEGMVAEAHDVVDMMIH-RGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMV 282

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLE 169
             +    V  +NTL+N       +D+   LF+ M +  ++P+  +YN LIHG     RL+
Sbjct: 283 HKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQ 342

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           DA  +F EMV R   P LVT+ TL   LC    +D+A+ L + I    N  PD Q++ ++
Sbjct: 343 DAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAI-EGSNWDPDIQIYTTI 401

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           + G+C  GEL  A  +   +    ++ +   Y+ +I  L K G   E   +  EM + GC
Sbjct: 402 LDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGC 461

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            PN  TYN +  GF +  +      +L+EM  +G   +  +  +++G L  DG
Sbjct: 462 SPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG 514



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 146/299 (48%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ +I  L +   +  +  +++++  D++I+P       V+    +  ++  A  +
Sbjct: 184 NIVTYNSLIHGLCKLCEWKHVTTLMNEMV-DSKIMPDVFTLNTVVDALCKEGMVAEAHDV 242

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            D M    V+  V  +N L++      ++D   ++F  M  K    +  SYN LI+G   
Sbjct: 243 VDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCK 302

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            + ++ A  +F+EM ++ L P  VT+ TLI+GLC   R+ +A+ L  +++    + PD  
Sbjct: 303 IQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQI-PDLV 361

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +L   LC    L  A+ + + +     + D  IY++++  + +AG   +   +   +
Sbjct: 362 TYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNL 421

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G +PN  TYN +I G CK+     A  +  EM   GC  N  +YN+I  G  ++ +
Sbjct: 422 SSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNE 480



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 118/239 (49%), Gaps = 2/239 (0%)

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
           + +EM +  +   V  F+T+++     G +    ++  +M ++ V PD  +Y  L+ G  
Sbjct: 695 LLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHC 754

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
           +   +++A KVFD MV +   P + ++  LI G C   R+D+A+ L E  M +  +  D 
Sbjct: 755 LRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQ-MSLQGLIADT 813

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +LI GLC VG L  A+ +  EMV      D   Y  L+  L K     E   +LK 
Sbjct: 814 VTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKA 873

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++      + + YN  I G C+  + EAA  +   +  KG + +  +YN+++ GLCK G
Sbjct: 874 IEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRG 932



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 126/267 (47%), Gaps = 21/267 (7%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++    + +     L +  +M SF +   V   N L+N   +   L R+   
Sbjct: 579 PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILIN---SFCHLRRLGYA 635

Query: 141 FQIMEKYV----SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           F ++ K +     PD  +Y  L++G               +M+ + + P + T+ +LI+ 
Sbjct: 636 FSVLAKLLKLGFQPDVVTYGTLMNGLC-------------KMITKGISPDIFTYNSLIHA 682

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC          L  +++    + P+  VF++++  LC  G +++A  V + M++  +E 
Sbjct: 683 LCNLCEWKHVTTLLNEMVN-SKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEP 741

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           D   Y++L+         +E   +   M  +GC PN  +YN LI+G+C+ +  + A  +L
Sbjct: 742 DVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLL 801

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
           ++M  +G  A+ ++YN ++ GLC  G+
Sbjct: 802 EQMSLQGLIADTVTYNTLIHGLCHVGR 828



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 139/327 (42%), Gaps = 51/327 (15%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNV-IGFYGRARLLERALQMFDEMSS 111
           ++T + + K +  +  +  Q+  D+  +P ++   N+ I  +   R L  A  +  ++  
Sbjct: 587 LLTSIAKMKHYSTVLSLSTQM--DSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLK 644

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG---------- 161
              Q  V  + TL+N             L +++ K +SPD  +YN LIH           
Sbjct: 645 LGFQPDVVTYGTLMN------------GLCKMITKGISPDIFTYNSLIHALCNLCEWKHV 692

Query: 162 ---------------CVVSRRLEDAW----------KVFDEMVKRRLQPTLVTFGTLIYG 196
                           VV   + DA            V D M+KR ++P +VT+  L+ G
Sbjct: 693 TTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDG 752

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
            CL   +DEA+K+  D M      P+ + +  LI G C +  +  A+G+ E+M    +  
Sbjct: 753 HCLRSEMDEAVKVF-DTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIA 811

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           D   Y++LI  L   GR     A+  EM   G  P+ VTY  L+   CK      A  +L
Sbjct: 812 DTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLL 871

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
             +      A+ + YN+ + G+C+ G+
Sbjct: 872 KAIEGSNLDADILVYNIAIDGMCRAGE 898



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 108/222 (48%), Gaps = 2/222 (0%)

Query: 122 NTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           NT  +  L    LD     F +++ K   P    +N L+     ++       +  +M  
Sbjct: 14  NTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDS 73

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
             + P + T   +I  LC   RVD A      I+++ + +PD   F +LI+GLC  G++ 
Sbjct: 74  FGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGH-QPDATTFTTLIRGLCVEGKIG 132

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            AL + ++M+ +  + +   Y +LI+ L K  +  E   I  EM  +G  PN VTYN+LI
Sbjct: 133 EALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLI 192

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            G CK  +++   T+++EM D     +  + N ++  LCK+G
Sbjct: 193 HGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEG 234



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 136/286 (47%), Gaps = 3/286 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y+ +I  L     +  +  +L+++  +++I+P  ++F  V+    +  ++  A  +
Sbjct: 672 DIFTYNSLIHALCNLCEWKHVTTLLNEMV-NSKIMPNVVVFSTVVDALCKEGMIAIAHDV 730

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            D M    V+  V  +  L++      ++D   ++F  M  K   P+  SYNILI+G   
Sbjct: 731 VDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQ 790

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            +R++ A  + ++M  + L    VT+ TLI+GLC   R+  A+ L  +++    + PD  
Sbjct: 791 IQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQI-PDLV 849

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  L+  LC    L+ A+ + + +    ++ D  +Y+  I  + +AG       +   +
Sbjct: 850 TYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNL 909

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
             +G +P+  TYN +I G CK    + A  +  +M +    +N  S
Sbjct: 910 SSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDIWSNSTS 955


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 156/304 (51%), Gaps = 6/304 (1%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           P   F+ + + Y  ++  L  +K +D+++++  ++  +   +P E+ F  +I F+ R  +
Sbjct: 240 PSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMM-EKNCMPNEVTFDMLIRFFCRGGM 298

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           +ERA+Q+ ++M+           N ++N     G++D   +L   M  Y  +PD  SY  
Sbjct: 299 VERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTT 358

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           ++ G   + R +DA ++ +EMV+    P  VTF T I  LC +  +++A+ L E  M  +
Sbjct: 359 VLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQ-MSEH 417

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
                   + +L+ G C  G +  AL +   M     + +   Y++L++ L  A R +  
Sbjct: 418 GCTVGVVTYNALVNGFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDGA 474

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++ EM    C PN VT+N L+S FC++   E A  ++++M + GC  N I+YN +L G
Sbjct: 475 AELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDG 534

Query: 338 LCKD 341
           + KD
Sbjct: 535 ITKD 538



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 147/338 (43%), Gaps = 44/338 (13%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           P+ P  Y   +  LI     R ++ D +  +   L+   +  P  + +  ++    R   
Sbjct: 138 PVAPDAYT--YTPLIRVLCDRGRVADALSLLDDMLRRGCQ--PNVVTYTVLLEAMCRNSG 193

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
            E+A+ + DEM +      +  +N ++N     G++D  +EL   +  Y   PD  SY  
Sbjct: 194 FEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTT 253

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY---------------------- 195
           L+ G   S+R +D  ++F EM+++   P  VTF  LI                       
Sbjct: 254 LLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHG 313

Query: 196 -------------GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
                         +C + RVD+A KL  D M  Y   PD   + +++KGLC       A
Sbjct: 314 CATNTTLCNIVINSICKQGRVDDAFKLLND-MGSYGCNPDTISYTTVLKGLCRAERWDDA 372

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
             +  EMVR+    +   +++ I  L + G   +   ++++M E GC    VTYNAL++G
Sbjct: 373 KELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNG 432

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           FC +   ++A  +   M    CK N I+Y  +L GLC 
Sbjct: 433 FCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCN 467



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 151/310 (48%), Gaps = 7/310 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           ND  ++   P   + + Y  ++  L RA+ +D+ +++L+++  +    P E+ F   I  
Sbjct: 342 NDMGSYGCNP---DTISYTTVLKGLCRAERWDDAKELLNEMVRNN-CPPNEVTFNTFICI 397

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDA 152
             +  L+E+A+ + ++MS     + V  +N L+N     G +D   ELF+ M     P+ 
Sbjct: 398 LCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP--CKPNT 455

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +Y  L+ G   + RL+ A ++  EM++    P +VTF  L+   C +  ++EA++L E 
Sbjct: 456 ITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQ 515

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           +M  +   P+   + +L+ G+        AL +   +V   +  D   +SS+I  L K  
Sbjct: 516 MME-HGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKED 574

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           R  E   +   +++ G +P +V YN ++ G CK  + + A      M   GC  N  +Y 
Sbjct: 575 RIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYI 634

Query: 333 VILGGLCKDG 342
           +++ GL  +G
Sbjct: 635 ILIEGLAHEG 644



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 142/307 (46%), Gaps = 11/307 (3%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
             P+  F YN L     +    R    D  ++++  +     + P    +  +I      
Sbjct: 106 GSPVDVFAYNTL-----VAGYCRYGHLDAARRLIGSMP----VAPDAYTYTPLIRVLCDR 156

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL-TCGKLDRMKELFQIMEKYVSPDACSY 155
             +  AL + D+M     Q  V  +  LL       G    M  L ++  K  +P+  +Y
Sbjct: 157 GRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTY 216

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N++I+G     R++DA ++ + +     QP  V++ TL+ GLC   R D+  +L  ++M 
Sbjct: 217 NVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMME 276

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
             N  P+   F  LI+  C  G +  A+ V E+M       +  + + +I+++ K GR +
Sbjct: 277 -KNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVD 335

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +   +L +M   GC P++++Y  ++ G C+ E ++ A  +L+EM    C  N +++N  +
Sbjct: 336 DAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFI 395

Query: 336 GGLCKDG 342
             LC+ G
Sbjct: 396 CILCQKG 402



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 3/223 (1%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           +NTL+      G LD  + L   M   V+PDA +Y  LI       R+ DA  + D+M++
Sbjct: 114 YNTLVAGYCRYGHLDAARRLIGSMP--VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLR 171

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           R  QP +VT+  L+  +C     ++A+ + ++ MR     P+   +  +I G+C  G + 
Sbjct: 172 RGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDE-MRAKGCTPNIVTYNVIINGMCREGRVD 230

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  +   +     + D   Y++L+  L  + R ++   +  EM E+ C PN VT++ LI
Sbjct: 231 DARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLI 290

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             FC+    E A  +L++M + GC  N    N+++  +CK G+
Sbjct: 291 RFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGR 333



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +L+ G C  G L  A  +   M    +  DA  Y+ LI  L   GR  +  ++L +M
Sbjct: 113 AYNTLVAGYCRYGHLDAARRLIGSM---PVAPDAYTYTPLIRVLCDRGRVADALSLLDDM 169

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             RGC+PN VTY  L+   C+   FE A  +LDEM  KGC  N ++YNVI+ G+C++G+
Sbjct: 170 LRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGR 228



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 4/195 (2%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           +PD      LI       R  DA +V            +  + TL+ G C    +D A +
Sbjct: 73  APDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARR 132

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           L   +     V PD   +  LI+ LC  G ++ AL + ++M+R   + +   Y+ L+ A+
Sbjct: 133 LIGSM----PVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAM 188

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            +     +  A+L EM+ +GC PN VTYN +I+G C+E   + A  +L+ +   G + + 
Sbjct: 189 CRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDT 248

Query: 329 ISYNVILGGLCKDGK 343
           +SY  +L GLC   +
Sbjct: 249 VSYTTLLKGLCASKR 263


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 157/302 (51%), Gaps = 3/302 (0%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  +++ Y+ II    +A    +   +L ++    RI P EI F  +I  + R   +  A
Sbjct: 260 FSPSVITYNTIIDGYCKAGKMFKADALLKEMVAK-RIHPNEITFNILIDGFCRDENVTAA 318

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
            ++F+EM    +Q  V  +N+L+N   + GKLD    L   M    + P+  +YN LI+G
Sbjct: 319 KKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALING 378

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
               + L++A ++ D++ KR L P ++TF TLI       R+D+A  L+  +M    V P
Sbjct: 379 FCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRS-MMLDTGVCP 437

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   +  LI G C  G +  A  + +EM  + ++ D   Y+ L+ AL K G   +   +L
Sbjct: 438 NVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLL 497

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM E G  P+ +TYNALI G+ +E +  AA  +   M  KG +AN ++YNV++ G C  
Sbjct: 498 DEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNK 557

Query: 342 GK 343
           GK
Sbjct: 558 GK 559



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 145/267 (54%), Gaps = 2/267 (0%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           RI    + F  VI    +    ++A  + ++M ++    +V  +NT+++     GK+ + 
Sbjct: 224 RIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKA 283

Query: 138 KELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
             L  +++ K + P+  ++NILI G      +  A KVF+EM ++ LQP +VT+ +LI G
Sbjct: 284 DALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLING 343

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC   ++DEAL L +D M    +KP+   + +LI G C    L  A  + +++ +  +  
Sbjct: 344 LCSNGKLDEALGL-QDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAP 402

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +   +++LI A  KAGR ++   +   M + G  PN  TYN LI GFC+E + + A  + 
Sbjct: 403 NVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLA 462

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
            EM   G KA+ ++YN+++  LCK G+
Sbjct: 463 KEMEGNGLKADLVTYNILVDALCKKGE 489



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 158/316 (50%), Gaps = 18/316 (5%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFC-NVIGFYGRARL----- 98
           +N+  +  ++  L  AK +++++ +L     +       I    +V+G +G A       
Sbjct: 105 HNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHSLSVLGSWGCANSIIVDM 164

Query: 99  ----------LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKY 147
                     ++ AL+ FD    +  +++    N +L   +  G++  ++ ++ +++ + 
Sbjct: 165 LVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRR 224

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           +  +  +++++I+G     + + A  V ++M      P+++T+ T+I G C   ++ +A 
Sbjct: 225 IGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKAD 284

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            L ++ M    + P+   F  LI G C    ++ A  V EEM R  ++ +   Y+SLI+ 
Sbjct: 285 ALLKE-MVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLING 343

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L   G+ +E   +  +M   G KPN VTYNALI+GFCK++  + A  +LD++G +G   N
Sbjct: 344 LCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPN 403

Query: 328 PISYNVILGGLCKDGK 343
            I++N ++    K G+
Sbjct: 404 VITFNTLIDAYGKAGR 419


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 161/307 (52%), Gaps = 13/307 (4%)

Query: 43  FRYNLLHYDLIIT---KLGRAKM-FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           F ++ + Y  +I    K+G  +   D +Q++   L     + P  +++  +I    + +L
Sbjct: 186 FHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNL-----VQPNVVMYNTIIDSMCKVKL 240

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDACSYN 156
           +  A  +F EM S  +   V  ++ L++     GKL    +LF   I+E  + PD  ++N
Sbjct: 241 VNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILEN-IKPDVYTFN 299

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           IL++      ++++   VFD M+K+ ++P  VT+ +L+ G CL   V++A K   + M  
Sbjct: 300 ILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKA-KSIFNTMAQ 358

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             V PD Q ++ +I G C + +   A+ + +EM R  I  D   YSSLI  L K+GR + 
Sbjct: 359 GGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISY 418

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              ++ +M +RG  PN  TYN+++   CK    + A  +L +  DKG + +  +Y++++ 
Sbjct: 419 ALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIK 478

Query: 337 GLCKDGK 343
           GLC+ GK
Sbjct: 479 GLCQSGK 485



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 157/298 (52%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ II  + + K+ +E   +  ++     I P  + +  +I  +     L+ A+ +
Sbjct: 224 NVVMYNTIIDSMCKVKLVNEAFDLFSEMV-SKGISPDVVTYSALISGFCILGKLKDAIDL 282

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           F++M   N++  V  FN L+N     GK+   K +F +M K  + P+  +YN L+ G  +
Sbjct: 283 FNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCL 342

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            + +  A  +F+ M +  + P + ++  +I G C   + DEA+ L +++ R  N+ PD  
Sbjct: 343 VKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHR-KNIIPDVV 401

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++SLI GL   G +S AL + ++M    +  +   Y+S++ AL K  + ++  A+L + 
Sbjct: 402 TYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKF 461

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           K++G +P+  TY+ LI G C+    E A  + +++  KG   +  +Y +++ G C +G
Sbjct: 462 KDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEG 519



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 127/250 (50%), Gaps = 2/250 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + + +++  Y   + + +A  +F+ M+   V   ++ ++ ++N      K D   
Sbjct: 326 IKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAM 385

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            LF+ M  K + PD  +Y+ LI G   S R+  A ++ D+M  R + P + T+ +++  L
Sbjct: 386 NLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDAL 445

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C   +VD+A+ L     +    +PD   ++ LIKGLC  G+L  A  V E+++     +D
Sbjct: 446 CKTHQVDKAIALLTK-FKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLD 504

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+ +I      G  NE  A+L +M++ GC P++ TY  +I    K+++ + A  +L 
Sbjct: 505 VYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLR 564

Query: 318 EMGDKGCKAN 327
           EM  +G   N
Sbjct: 565 EMIARGLPLN 574



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 2/211 (0%)

Query: 134 LDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           +D    LF +++ +  +P A  +N ++   V S+       +  +M  R ++P LV    
Sbjct: 66  VDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 125

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           LI   C    +  A  +   I+++  V PD   F +L KGLC  G++  A    +++V  
Sbjct: 126 LINCFCQLGLIPFAFSVFAKILKMGYV-PDTITFTTLSKGLCLKGQIQQAFLFHDKVVAL 184

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
               D   Y +LI  L K G       +L+ +     +PN V YN +I   CK +    A
Sbjct: 185 GFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEA 244

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           F +  EM  KG   + ++Y+ ++ G C  GK
Sbjct: 245 FDLFSEMVSKGISPDVVTYSALISGFCILGK 275


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 177/366 (48%), Gaps = 43/366 (11%)

Query: 19  KLALQLFKNPNPNPNDT--EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD 76
           K  L  +++  P P+     A  +  ++     +  +I     +  F  + Q+  ++K +
Sbjct: 34  KTTLSPYESDAPIPDQIFKSASQMGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRE 93

Query: 77  TRI-VPKEIIFCNVIGFYGRARLLERALQMFDEM-SSFNVQMTVKFFNTLLNPKLTCGKL 134
            R+ + K  I   V   YG+A L E+A+++F  M   F  + TV+ FN++LN  +  G  
Sbjct: 94  RRVFIEKNFIL--VFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLF 151

Query: 135 DRMKELFQIM---EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
            R  E ++     +  +SP+  S+N++I        ++ A +VF EM  ++ +P + T+ 
Sbjct: 152 HRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYC 211

Query: 192 TLIYGLCLELRVDEALKL-------------------------KEDIMRVYNVK------ 220
           TL+ GLC E R+DEA+ L                         K D++RV  +       
Sbjct: 212 TLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLK 271

Query: 221 ---PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
              P+   + ++I GLC  G+L  A+ + + MV  K   +   Y +LI+ L K GR  + 
Sbjct: 272 GCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDG 331

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +L  ++ERG   N   Y+ LISG  KEE  E A  +  +M +KGC+ N + Y+ ++ G
Sbjct: 332 VHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDG 391

Query: 338 LCKDGK 343
           LC++GK
Sbjct: 392 LCREGK 397



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 152/299 (50%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+L ++L+I  + +  + D   ++  ++    +  P    +C ++    +   ++ A+ +
Sbjct: 171 NVLSFNLVIKAMCKLGLVDRAIEVFREMAIQ-KCEPDVFTYCTLMDGLCKEDRIDEAVLL 229

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            DEM       +   FN L+N     G + R+ +L   M  K   P+  +YN +I+G  +
Sbjct: 230 LDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCL 289

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L+ A  + D MV  +  P  VT+GTLI GL  + R  + + L   +    +   +  
Sbjct: 290 KGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGH-HANEY 348

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +++LI GL    +   A+G+ ++MV    + +  +YS+LI  L + G+ +E   IL EM
Sbjct: 349 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 408

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +GC PN+ TY++LI GF K  + + A  +  EM    C  N I Y+V++ GLC+DGK
Sbjct: 409 VNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGK 467



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 131/266 (49%), Gaps = 8/266 (3%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK-LDRMK 138
           VP E+ +  +I        L++A+ + D M +         + TL+N  +  G+ +D + 
Sbjct: 274 VPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVH 333

Query: 139 ELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            L  + E+    +  +Y+ LI G     + E+A  ++ +MV++  QP +V +  LI GLC
Sbjct: 334 LLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLC 393

Query: 199 LELRVDEALKLKEDIMRVYN--VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
            E ++DEA   KE +  + N    P+   ++SLIKG    G    A+ V +EM ++    
Sbjct: 394 REGKLDEA---KEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVP 450

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +   YS LI  L + G+  E   +   M  RG +P+ V Y+++I G C     E    + 
Sbjct: 451 NEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLF 510

Query: 317 DEMGDKGCKANP--ISYNVILGGLCK 340
           +EM  +   + P  ++YN++L  LCK
Sbjct: 511 NEMLCQESDSQPDVVTYNILLRALCK 536



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 111/254 (43%), Gaps = 23/254 (9%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +++  +I    R   L+ A ++  EM +         +++L+      G   +   +
Sbjct: 380 PNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRV 439

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           ++ M K    P+   Y++LIHG     +L +A  ++  M+ R L+P +V + ++I+GLC 
Sbjct: 440 WKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCN 499

Query: 200 ELRVDEALKL-KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL---------GVKEEM 249
              V+  LKL  E + +  + +PD   +  L++ LC    +S A+         G   ++
Sbjct: 500 AGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDL 559

Query: 250 VRDKIEMDA------------GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           +   I ++A                 L+  L K  R      I++ M ++   PN+ T+ 
Sbjct: 560 ITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWE 619

Query: 298 ALISGFCKEEDFEA 311
            +I   CK +  +A
Sbjct: 620 RIIPELCKPKKVQA 633


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 160/299 (53%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y +++  L +    D    +L++++   ++ P  +I+  +I    + + ++ AL +
Sbjct: 220 DLVTYGVVVNGLCKRGDTDLAFNLLNKMEQG-KLEPGVLIYNTIIDGLCKYKHMDDALNL 278

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           F EM +  ++  V  +++L++     G+  D  + L  ++E+ ++PD  +++ LI   V 
Sbjct: 279 FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 338

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L +A K++DEMVKR + P++VT+ +LI G C+  R+DEA ++ E  M   +  PD  
Sbjct: 339 EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE-FMVSKHCFPDVV 397

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LIKG C    +   + V  EM +  +  +   Y+ LI  LF+AG  +    I KEM
Sbjct: 398 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM 457

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  PN +TYN L+ G CK    E A  + + +     +    +YN+++ G+CK GK
Sbjct: 458 VSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 516



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 162/323 (50%), Gaps = 13/323 (4%)

Query: 21  ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
           AL LFK       + E   ++P   N++ Y  +I+ L     + +  ++L  +  + +I 
Sbjct: 275 ALNLFK-------EMETKGIRP---NVVTYSSLISCLCNYGRWSDASRLLSDMI-ERKIN 323

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    F  +I  + +   L  A +++DEM   ++  ++  +++L+N      +LD  K++
Sbjct: 324 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 383

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ M  K+  PD  +YN LI G    +R+E+  +VF EM +R L    VT+  LI GL  
Sbjct: 384 FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 443

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
               D A ++ ++ M    V P+   + +L+ GLC  G+L  A+ V E + R K+E    
Sbjct: 444 AGDCDMAQEIFKE-MVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIY 502

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+ +I  + KAG+  +   +   +  +G KP+ V YN +ISGFC++   E A  +  EM
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 562

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
            + G   N   YN ++    +DG
Sbjct: 563 KEDGTLPNSGCYNTLIRARLRDG 585



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 134/261 (51%), Gaps = 2/261 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +   +++  Y  ++ +  A+ + D+M     Q     FNTL++      K      L
Sbjct: 149 PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL 208

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
             +++ K   PD  +Y ++++G       + A+ + ++M + +L+P ++ + T+I GLC 
Sbjct: 209 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 268

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
              +D+AL L ++ M    ++P+   ++SLI  LC  G  S A  +  +M+  KI  D  
Sbjct: 269 YKHMDDALNLFKE-METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 327

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            +S+LI A  K G+  E   +  EM +R   P+ VTY++LI+GFC  +  + A  + + M
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 387

Query: 320 GDKGCKANPISYNVILGGLCK 340
             K C  + ++YN ++ G CK
Sbjct: 388 VSKHCFPDVVTYNTLIKGFCK 408



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 130/266 (48%), Gaps = 4/266 (1%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F  +I G +   +  E A+ + D M +   Q  +  +  ++N     G  D    
Sbjct: 184 PNTVTFNTLIHGLFLHNKASE-AMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFN 242

Query: 140 LFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L   ME+  + P    YN +I G    + ++DA  +F EM  + ++P +VT+ +LI  LC
Sbjct: 243 LLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLC 302

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              R  +A +L  D++    + PD   F++LI      G+L  A  + +EMV+  I+   
Sbjct: 303 NYGRWSDASRLLSDMIE-RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 361

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             YSSLI+      R +E   + + M  + C P+ VTYN LI GFCK +  E    +  E
Sbjct: 362 VTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFRE 421

Query: 319 MGDKGCKANPISYNVILGGLCKDGKC 344
           M  +G   N ++YN+++ GL + G C
Sbjct: 422 MSQRGLVGNTVTYNILIQGLFQAGDC 447



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 1/176 (0%)

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           +L+DA  +F EMVK R  P+++ F  L+  +    + D  + L E  M+   +  +   +
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQ-MQNLGIPHNHYTY 119

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
           + LI   C   +L LAL V  +M++   E +    SSL++    + R +E  A++ +M  
Sbjct: 120 SILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFV 179

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            G +PN+VT+N LI G         A  ++D M  KGC+ + ++Y V++ GLCK G
Sbjct: 180 TGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRG 235


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 153/287 (53%), Gaps = 9/287 (3%)

Query: 58  GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT 117
           G+ +    + +IL     ++  VP  I +  +IG Y ++  +++ALQ+ + MS   V   
Sbjct: 156 GKTRKATRIMEILE----NSGAVPDVITYNVLIGGYCKSGEIDKALQVLERMS---VAPD 208

Query: 118 VKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFD 176
           V  +NT+L      GKL + M+ L + M++   PD  +Y ILI        +  A K+ D
Sbjct: 209 VVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLD 268

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
           EM K+  +P +VT+  LI G+C E R+DEA+K   + M +Y  +P+      +++ +C+ 
Sbjct: 269 EMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNN-MPLYGCQPNVITHNIILRSMCST 327

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           G    A  +  +M+R         ++ LI+ L +         +L++M + GC PNS++Y
Sbjct: 328 GRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSY 387

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           N L+ GFC+E+  + A   L+ M  +GC  + ++YN +L  LCKDGK
Sbjct: 388 NPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGK 434



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 145/299 (48%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ I+  L  +    E  ++L + +      P  I +  +I        + +A+++
Sbjct: 208 DVVTYNTILRSLCDSGKLKEAMEVLDR-QMQRECYPDVITYTILIEATCNDSGVGQAMKL 266

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            DEM     +  V  +N L+N     G+LD   +    M  Y   P+  ++NI++     
Sbjct: 267 LDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCS 326

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R  DA ++  +M+++   P++VTF  LI  LC +  +  A+ + E  M  +   P+  
Sbjct: 327 TGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEK-MPKHGCMPNSL 385

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  L+ G C   ++  A+   E MV      D   Y++L++AL K G+ +    IL ++
Sbjct: 386 SYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQL 445

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +GC P  +TYN +I G  K    E A  +L+EM  KG K + I+Y+ +L GL  +GK
Sbjct: 446 SSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGK 504



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 140/300 (46%), Gaps = 36/300 (12%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           PL   + N++ +++I+  +     + + +++L  +       P  + F  +I F  R RL
Sbjct: 306 PLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKG-CSPSVVTFNILINFLCRKRL 364

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL 158
           L RA+ + ++M                 PK  C                  P++ SYN L
Sbjct: 365 LGRAIDVLEKM-----------------PKHGC-----------------MPNSLSYNPL 390

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           +HG    ++++ A +  + MV R   P +VT+ TL+  LC + + D A+++    +    
Sbjct: 391 LHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQ-LSSKG 449

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
             P    + ++I GL  VG+   A  + EEM R  ++ D   YS+L+  L   G+ +E  
Sbjct: 450 CSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAI 509

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            I  +M+    KP++VTYNA++ G CK +    A   L  M +KGCK    +Y +++ G+
Sbjct: 510 KIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIEGI 569



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 102/194 (52%), Gaps = 4/194 (2%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PD  +   LI G   S +   A ++ + +      P ++T+  LI G C    +D+AL++
Sbjct: 140 PDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQV 199

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            E +    +V PD   + ++++ LC  G+L  A+ V +  ++ +   D   Y+ LI A  
Sbjct: 200 LERM----SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATC 255

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
                 +   +L EM+++GCKP+ VTYN LI+G CKE   + A   L+ M   GC+ N I
Sbjct: 256 NDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVI 315

Query: 330 SYNVILGGLCKDGK 343
           ++N+IL  +C  G+
Sbjct: 316 THNIILRSMCSTGR 329



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           NI +   V +  LE+  K  + M+ +   P ++   +LI G C   +  +A ++ E I+ 
Sbjct: 111 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIME-ILE 169

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
                PD   +  LI G C  GE+  AL V E M    +  D   Y++++ +L  +G+  
Sbjct: 170 NSGAVPDVITYNVLIGGYCKSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGKLK 226

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E   +L    +R C P+ +TY  LI   C +     A  +LDEM  KGCK + ++YNV++
Sbjct: 227 EAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLI 286

Query: 336 GGLCKDGK 343
            G+CK+G+
Sbjct: 287 NGICKEGR 294


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 156/303 (51%), Gaps = 3/303 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +  R +++ Y  II  L + K+ DE   +  ++ +   I P  I +  +I  +  A  L 
Sbjct: 144 RSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEM-NARGIFPDVITYTTLICGFCLAGQLM 202

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            A  + +EM   N+   +  +NTL++     GK+   K L  +M +K V PD   Y+IL+
Sbjct: 203 EAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILM 262

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G  +   ++ A ++F  MV+  + P + ++  +I GLC   RVDEA+ L  +++   N+
Sbjct: 263 DGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLH-KNM 321

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   ++SLI GLC +G ++  L + +EM       +   Y+SL+  L K    ++  A
Sbjct: 322 IPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIA 381

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +  +MKERG +PN  TY ALI G CK    +    +   +  KG   +  +Y V++ GLC
Sbjct: 382 LFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLC 441

Query: 340 KDG 342
           K+G
Sbjct: 442 KEG 444



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 136/271 (50%), Gaps = 6/271 (2%)

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL- 134
           D    P  +++  +I    + +L++ A  ++ EM++  +   V  + TL+      G+L 
Sbjct: 143 DRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLM 202

Query: 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           +    L +++ K ++P+  +YN LI       +++++  +   M K+ ++P +V +  L+
Sbjct: 203 EAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILM 262

Query: 195 YGLCLELRVDEALKLKED--IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
            G CL   V E  K K+   +M    V PD   +  +I GLC    +  A+ +  EM+  
Sbjct: 263 DGYCL---VGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHK 319

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
            +  D   YSSLI  L K GR      + KEM  RG   N VTYN+L+ G CK ++ + A
Sbjct: 320 NMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKA 379

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +  +M ++G + N  +Y  ++ GLCK G+
Sbjct: 380 IALFMKMKERGIQPNKYTYTALIDGLCKGGR 410



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 100/202 (49%), Gaps = 1/202 (0%)

Query: 142 QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
           Q+  K + PD  + +ILI+      ++  ++ V  +++K   QP  +   TL+ GLCL+ 
Sbjct: 35  QMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKG 94

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
            V ++L   + ++     + D   +  L+ GLC +GE   A+ +   +       D  +Y
Sbjct: 95  EVKKSLHFHDKVV-AQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMY 153

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           S++I  L K    +E   +  EM  RG  P+ +TY  LI GFC       AF +L+EM  
Sbjct: 154 STIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMIL 213

Query: 322 KGCKANPISYNVILGGLCKDGK 343
           K    N  +YN ++  LCK+GK
Sbjct: 214 KNINPNIYTYNTLIDTLCKEGK 235



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 122/267 (45%), Gaps = 2/267 (0%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-R 136
           R +P  I F  ++G   + +     + +  +M +  +   +   + L+N     G++   
Sbjct: 5   RHIPPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFS 64

Query: 137 MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
              L +I++    P+    N L+ G  +   ++ +    D++V +  Q   V++G L+ G
Sbjct: 65  FSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNG 124

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC       A+KL   I    + +PD  +++++I GLC    +  A  +  EM    I  
Sbjct: 125 LCKIGETRCAIKLLRTI-EDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFP 183

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           D   Y++LI     AG+  E   +L EM  +   PN  TYN LI   CKE   + +  +L
Sbjct: 184 DVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLL 243

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
             M  KG K + + Y++++ G C  G+
Sbjct: 244 AVMTKKGVKPDVVIYSILMDGYCLVGE 270


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 160/299 (53%), Gaps = 3/299 (1%)

Query: 46   NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            +L+ Y +++  L +    D    +L++++   ++ P  +I+  +I    + + ++ AL +
Sbjct: 834  DLVTYGVVVNGLCKRGDTDLAFNLLNKMEQG-KLEPGVLIYNTIIDGLCKYKHMDDALNL 892

Query: 106  FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
            F EM +  ++  V  +++L++     G+  D  + L  ++E+ ++PD  +++ LI   V 
Sbjct: 893  FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 952

Query: 165  SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +L +A K++DEMVKR + P++VT+ +LI G C+  R+DEA ++ E  M   +  PD  
Sbjct: 953  EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE-FMVSKHCFPDVV 1011

Query: 225  VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
             + +LIKG C    +   + V  EM +  +  +   Y+ LI  LF+AG  +    I KEM
Sbjct: 1012 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM 1071

Query: 285  KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               G  PN +TYN L+ G CK    E A  + + +     +    +YN+++ G+CK GK
Sbjct: 1072 VSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 1130



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 162/323 (50%), Gaps = 13/323 (4%)

Query: 21   ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
            AL LFK       + E   ++P   N++ Y  +I+ L     + +  ++L  +  + +I 
Sbjct: 889  ALNLFK-------EMETKGIRP---NVVTYSSLISCLCNYGRWSDASRLLSDM-IERKIN 937

Query: 81   PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
            P    F  +I  + +   L  A +++DEM   ++  ++  +++L+N      +LD  K++
Sbjct: 938  PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 997

Query: 141  FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
            F+ M  K+  PD  +YN LI G    +R+E+  +VF EM +R L    VT+  LI GL  
Sbjct: 998  FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 1057

Query: 200  ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
                D A ++ ++ M    V P+   + +L+ GLC  G+L  A+ V E + R K+E    
Sbjct: 1058 AGDCDMAQEIFKE-MVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIY 1116

Query: 260  IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             Y+ +I  + KAG+  +   +   +  +G KP+ V YN +ISGFC++   E A  +  EM
Sbjct: 1117 TYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 1176

Query: 320  GDKGCKANPISYNVILGGLCKDG 342
             + G   N   YN ++    +DG
Sbjct: 1177 KEDGTLPNSGCYNTLIRARLRDG 1199



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 148/285 (51%), Gaps = 8/285 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLL 99
           K  R N++ Y  ++  L  +  + +  ++L  +    +I P  I +  ++  F    ++L
Sbjct: 322 KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK-KKITPNVITYSALLDAFVKNGKVL 380

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           E A ++F+EM   ++   +  +++L+N      ++D   ++F +M  K    D  SYN L
Sbjct: 381 E-AKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTL 439

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G   ++R+ED  K+F EM +R L    VT+ TLI G      VD+A +     M  + 
Sbjct: 440 INGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQ-MDFFG 498

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   +  L+ GLC  GEL  AL + E+M + ++++D   Y+++I  + K G+  E  
Sbjct: 499 ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAW 558

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKE---EDFEAAFTILDEMG 320
           ++   +  +G KP+ VTY  ++SG C +    + EA +T + + G
Sbjct: 559 SLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 603



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 138/264 (52%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +   +++  + R   +  A+ + D+M     +  +  +N +++      +++   + 
Sbjct: 256 PDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDF 315

Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ +E K + P+  +Y  L++G   S R  DA ++  +M+K+++ P ++T+  L+     
Sbjct: 316 FKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVK 375

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             +V EA +L E+++R+ ++ PD   ++SLI GLC    +  A  + + MV      D  
Sbjct: 376 NGKVLEAKELFEEMVRM-SIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVV 434

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI+   KA R  +   + +EM +RG   N+VTYN LI GF +  D + A     +M
Sbjct: 435 SYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 494

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
              G   +  +YN++LGGLC +G+
Sbjct: 495 DFFGISPDIWTYNILLGGLCDNGE 518



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 134/261 (51%), Gaps = 2/261 (0%)

Query: 81   PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
            P  +   +++  Y  ++ +  A+ + D+M     Q     FNTL++      K      L
Sbjct: 763  PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL 822

Query: 141  F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
              +++ K   PD  +Y ++++G       + A+ + ++M + +L+P ++ + T+I GLC 
Sbjct: 823  IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 882

Query: 200  ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
               +D+AL L ++ M    ++P+   ++SLI  LC  G  S A  +  +M+  KI  D  
Sbjct: 883  YKHMDDALNLFKE-METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 941

Query: 260  IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             +S+LI A  K G+  E   +  EM +R   P+ VTY++LI+GFC  +  + A  + + M
Sbjct: 942  TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 1001

Query: 320  GDKGCKANPISYNVILGGLCK 340
              K C  + ++YN ++ G CK
Sbjct: 1002 VSKHCFPDVVTYNTLIKGFCK 1022



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 130/266 (48%), Gaps = 4/266 (1%)

Query: 81   PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
            P  + F  +I G +   +  E A+ + D M +   Q  +  +  ++N     G  D    
Sbjct: 798  PNTVTFNTLIHGLFLHNKASE-AMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFN 856

Query: 140  LFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            L   ME+  + P    YN +I G    + ++DA  +F EM  + ++P +VT+ +LI  LC
Sbjct: 857  LLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLC 916

Query: 199  LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
               R  +A +L  D++    + PD   F++LI      G+L  A  + +EMV+  I+   
Sbjct: 917  NYGRWSDASRLLSDMIE-RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 975

Query: 259  GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
              YSSLI+      R +E   + + M  + C P+ VTYN LI GFCK +  E    +  E
Sbjct: 976  VTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFRE 1035

Query: 319  MGDKGCKANPISYNVILGGLCKDGKC 344
            M  +G   N ++YN+++ GL + G C
Sbjct: 1036 MSQRGLVGNTVTYNILIQGLFQAGDC 1061



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 131/264 (49%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKE 139
           P  + +  +I    + + +  A   F E+    ++  V  +  L+N      +  D  + 
Sbjct: 291 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 350

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L  +++K ++P+  +Y+ L+   V + ++ +A ++F+EMV+  + P +VT+ +LI GLCL
Sbjct: 351 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCL 410

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R+DEA ++  D+M       D   + +LI G C    +   + +  EM +  +  +  
Sbjct: 411 HDRIDEANQMF-DLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTV 469

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI   F+AG  ++      +M   G  P+  TYN L+ G C   + E A  I ++M
Sbjct: 470 TYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM 529

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             +    + ++Y  ++ G+CK GK
Sbjct: 530 QKREMDLDIVTYTTVIRGMCKTGK 553



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 142/287 (49%), Gaps = 4/287 (1%)

Query: 55  TKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNV 114
           T+L   K+ D +      +K  +R  P  + F  ++    + +  +  + +  +M    +
Sbjct: 162 TRLRDIKLNDAIDLFSDMVK--SRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGI 219

Query: 115 QMTVKFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWK 173
           +  +  FN ++N    C ++   +  L ++++    PD  +   L++G     R+ DA  
Sbjct: 220 RNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVS 279

Query: 174 VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGL 233
           + D+MV+   +P +V +  +I  LC   RV++A    ++I R   ++P+   + +L+ GL
Sbjct: 280 LVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIER-KGIRPNVVTYTALVNGL 338

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           C     S A  +  +M++ KI  +   YS+L+ A  K G+  E   + +EM      P+ 
Sbjct: 339 CNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDI 398

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           VTY++LI+G C  +  + A  + D M  KGC A+ +SYN ++ G CK
Sbjct: 399 VTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCK 445



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 1/176 (0%)

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           +L+DA  +F EMVK R  P+++ F  L+  +    + D  + L E  M+   +  +   +
Sbjct: 675 KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQ-MQNLGIPHNHYTY 733

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
           + LI   C   +L LAL V  +M++   E +    SSL++    + R +E  A++ +M  
Sbjct: 734 SILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFV 793

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            G +PN+VT+N LI G         A  ++D M  KGC+ + ++Y V++ GLCK G
Sbjct: 794 TGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRG 849



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 2/212 (0%)

Query: 133 KLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           KL+   +LF  M K    P    +N L+   V  ++ +    +  +M    ++  L TF 
Sbjct: 168 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 227

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
            +I   C   +V  AL +   ++++   +PD     SL+ G C    +S A+ + ++MV 
Sbjct: 228 IVINCFCCCFQVSLALSILGKMLKL-GYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE 286

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
              + D   Y+++I +L K  R N+     KE++ +G +PN VTY AL++G C    +  
Sbjct: 287 IGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSD 346

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           A  +L +M  K    N I+Y+ +L    K+GK
Sbjct: 347 AARLLSDMIKKKITPNVITYSALLDAFVKNGK 378


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 142/268 (52%), Gaps = 2/268 (0%)

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           + ++ P  + + +++G Y     + +AL+++ EM+   +  ++  F TLL+     G + 
Sbjct: 465 NKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIR 524

Query: 136 RMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
              +LF  M ++ V P+  +YN++I G      +  A++   EM ++ + P   ++  LI
Sbjct: 525 DAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLI 584

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
           +GLCL  +  EA K+  D +   N + +   +  L+ G C  G+L  AL V +EMV+  +
Sbjct: 585 HGLCLTGQASEA-KVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGV 643

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           ++D   Y  LI    K   +  F  +LKEM +RG KP+ V Y ++I    K  DF+ AF 
Sbjct: 644 DLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFG 703

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDG 342
           I D M ++GC  N ++Y  ++ GLCK G
Sbjct: 704 IWDLMINEGCVPNEVTYTAVINGLCKAG 731



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 147/334 (44%), Gaps = 38/334 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+++I  L + +   E   I   L     + P  + +C ++    + +  E  L+M
Sbjct: 261 NIVPYNVLIDGLCKKQKVWEAVGIKKDLA-GKDLKPDVVTYCTLVYGLCKVQEFEIGLEM 319

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
            DEM       +    ++L+      GK++    L + +++  VSP+   YN LI     
Sbjct: 320 MDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCK 379

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            R+  +A  +FD M K  L+P  VT+  LI   C   ++D AL    +++    +K    
Sbjct: 380 GRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDT-GLKLSVY 438

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL-------------------- 264
            + SLI G C  G++S A G   EM+  K+E     Y+SL                    
Sbjct: 439 PYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEM 498

Query: 265 ---------------ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
                          +S LF+AG   +   +  EM E   KPN VTYN +I G+C+E D 
Sbjct: 499 TGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDM 558

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             AF  L EM +KG   +  SY  ++ GLC  G+
Sbjct: 559 SKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQ 592



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 135/299 (45%), Gaps = 38/299 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL  Y+ +I  L + + F E + +  ++     + P ++ +  +I  + R   L+ AL  
Sbjct: 366 NLFVYNALIDSLCKGRKFHEAELLFDRMGK-IGLRPNDVTYSILIDMFCRRGKLDTALSF 424

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             EM    ++++V  +N+L+N     G +   +    +++ K + P   +Y  L+ G   
Sbjct: 425 LGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCS 484

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             ++  A +++ EM  + + P++ TF TL+ GL     + +A+KL  + M  +NVKP+  
Sbjct: 485 KGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNE-MAEWNVKPNRV 543

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  +I+G C  G++S A                                 EF   LKEM
Sbjct: 544 TYNVMIEGYCEEGDMSKAF--------------------------------EF---LKEM 568

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            E+G  P++ +Y  LI G C       A   +D +    C+ N I Y  +L G C++GK
Sbjct: 569 TEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGK 627



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 122/267 (45%), Gaps = 12/267 (4%)

Query: 83  EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF- 141
           EI +  ++  + R   LE AL +  EM    V + +  +  L++  L      + ++LF 
Sbjct: 612 EICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLK----HKDRKLFF 667

Query: 142 ----QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
               ++ ++ + PD   Y  +I     +   ++A+ ++D M+     P  VT+  +I GL
Sbjct: 668 GLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGL 727

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK-EEMVRDKIEM 256
           C    V+EA  L   +  V +V P+   +   +  L   GE+ +   V+    +   +  
Sbjct: 728 CKAGFVNEAEVLCSKMQPVSSV-PNQVTYGCFLDILTK-GEVDMQKAVELHNAILKGLLA 785

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +   Y+ LI    + GR  E   ++  M   G  P+ +TY  +I+  C+  D + A  + 
Sbjct: 786 NTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELW 845

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
           + M +KG + + ++YN ++ G C  G+
Sbjct: 846 NSMTEKGIRPDRVAYNTLIHGCCVAGE 872



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 2/186 (1%)

Query: 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV-KRRLQPTLVTFGTL 193
           D    LF   EK     + S+++LI   V SRR+ D   VF  M+ K  L P + T   L
Sbjct: 139 DVFNVLFSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSAL 198

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           ++GL        A++L  D++ V  ++PD  ++  +I+ LC + +LS A  +   M    
Sbjct: 199 LHGLVKFRHFGLAMELFNDMVSV-GIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATG 257

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
            +++   Y+ LI  L K  +  E   I K++  +  KP+ VTY  L+ G CK ++FE   
Sbjct: 258 CDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGL 317

Query: 314 TILDEM 319
            ++DEM
Sbjct: 318 EMMDEM 323



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 1/138 (0%)

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
           +D  L  K  I +V ++ P+ +  ++L+ GL       LA+ +  +MV   I  D  IY+
Sbjct: 173 LDGVLVFKMMITKV-SLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYT 231

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
            +I +L +    +    ++  M+  GC  N V YN LI G CK++    A  I  ++  K
Sbjct: 232 GVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGK 291

Query: 323 GCKANPISYNVILGGLCK 340
             K + ++Y  ++ GLCK
Sbjct: 292 DLKPDVVTYCTLVYGLCK 309



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 103/234 (44%), Gaps = 14/234 (5%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           HD  + P ++I+ ++I    +    + A  ++D M +         +  ++N     G +
Sbjct: 674 HDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFV 733

Query: 135 DRMKELFQIMEKYVS-PDACSY----NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
           +  + L   M+   S P+  +Y    +IL  G V    ++ A ++ + ++K  L  T  T
Sbjct: 734 NEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEV---DMQKAVELHNAILKGLLANT-AT 789

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYN--VKPDGQVFASLIKGLCAVGELSLALGVKE 247
           +  LI G C + R++EA +L   I R+    V PD   + ++I  LC   ++  A+ +  
Sbjct: 790 YNMLIRGFCRQGRIEEASEL---ITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWN 846

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
            M    I  D   Y++LI     AG   +   +  EM  +G  PN+ T     S
Sbjct: 847 SMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKTSRTTTS 900


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 150/306 (49%), Gaps = 8/306 (2%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARL 98
           L+ F  N   Y +++  L R    DE + +L+++ +     P  ++F  +I G+  R RL
Sbjct: 333 LRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN-----PNVVLFNTLINGYVSRGRL 387

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
            E    M + M S      +  +NTL+      G L   +EL   M+ K   P+  +Y I
Sbjct: 388 DEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTI 447

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI       RLE+A  V DEM  + L    V +  LI  LC + +V +AL +  D M   
Sbjct: 448 LIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGD-MSSK 506

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             KPD   F SLI GLC V +   ALG+ ++M+ + +  +   Y++LI A  + G   E 
Sbjct: 507 GCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEA 566

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++ +M  RGC  + +TYN LI   C+  + E    + ++M  KG   N IS N+++ G
Sbjct: 567 LKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILING 626

Query: 338 LCKDGK 343
           LC+ G 
Sbjct: 627 LCRTGN 632



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 146/298 (48%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y ++I +  +    +E + +L ++     +    + +  +I    +   ++ AL M
Sbjct: 441 NVITYTILIDRFCKEGRLEEARNVLDEMS-GKGLALNAVGYNCLISALCKDEKVQDALNM 499

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           F +MSS   +  +  FN+L+       K +    L+Q ++ + V  +  +YN LIH  + 
Sbjct: 500 FGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLR 559

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +++A K+ ++M+ R      +T+  LI  LC    +++ L L ED+M    + P+  
Sbjct: 560 RGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMS-KGLNPNNI 618

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
               LI GLC  G +  AL    +M+   +  D   Y+SLI+ L K GR  E   +  ++
Sbjct: 619 SCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKL 678

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +  G  P+++TYN LIS  CKE  F+ A  +L    D G   N +++ +++    K+G
Sbjct: 679 QVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 736



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 159/333 (47%), Gaps = 46/333 (13%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I KLG A  F     +L Q+K +  IV +E +F  ++  YGRA L  +A ++  +M
Sbjct: 132 YYMLIDKLGAAGEFKTTDALLMQMKQEG-IVFRESLFILIMKHYGRAGLPGQATRLLLDM 190

Query: 110 SS-FNVQMTVKFFNTLLNPKLT--CGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSR 166
              ++ + T + +N +L+  L   C K+      ++++ K +SP   ++ +++    +  
Sbjct: 191 RGVYSCEPTFRSYNVVLDVLLAGNCPKVVP-NVFYEMLSKGISPTVYTFGVVMKALCLVN 249

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL------------------- 207
            ++ A  +  +M +    P  + + TLI+ L    RV+E L                   
Sbjct: 250 EVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFN 309

Query: 208 ----------KLKE-----DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
                     ++ E     D M +    P+   +  L+ GLC +G++  A      M+ +
Sbjct: 310 DAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEA-----RMLLN 364

Query: 253 KI-EMDAGIYSSLISALFKAGRKNEFPAILKE-MKERGCKPNSVTYNALISGFCKEEDFE 310
           K+   +  ++++LI+     GR +E  A++ E M   GC P+  TYN LI G CK+    
Sbjct: 365 KVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLV 424

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +A  +++EM  KGC+ N I+Y +++   CK+G+
Sbjct: 425 SARELMNEMQIKGCEPNVITYTILIDRFCKEGR 457



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 99/225 (44%), Gaps = 31/225 (13%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PD  ++N  IHG     R+ +A K+ D M+ R   P   T+G L++GLC   +VDEA  L
Sbjct: 303 PDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARML 362

Query: 210 KEDI-------------------------------MRVYNVKPDGQVFASLIKGLCAVGE 238
              +                               M      PD   + +LI GLC  G 
Sbjct: 363 LNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGY 422

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           L  A  +  EM     E +   Y+ LI    K GR  E   +L EM  +G   N+V YN 
Sbjct: 423 LVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNC 482

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           LIS  CK+E  + A  +  +M  KGCK +  ++N ++ GLCK  K
Sbjct: 483 LISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNK 527



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 107/231 (46%), Gaps = 2/231 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    F ++I    +    E AL ++ +M    V      +NTL++  L  G +    +L
Sbjct: 510 PDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKL 569

Query: 141 FQIMEKYVSP-DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
              M     P D  +YN LI     +  +E    +F++M+ + L P  ++   LI GLC 
Sbjct: 570 VNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCR 629

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
              +  AL+   D++    + PD   + SLI GLC  G    AL + +++  + I  DA 
Sbjct: 630 TGNIQHALEFLRDMIH-RGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAI 688

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
            Y++LIS   K G  ++   +L    + G  PN VT+  L+S F KE D E
Sbjct: 689 TYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 739


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 100/320 (31%), Positives = 160/320 (50%), Gaps = 40/320 (12%)

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS-SFNVQMTVKFF 121
           F  ++++L +++ + R+V  E  F  +   YG+A L E+A+ +FD M+  F  + TVK F
Sbjct: 76  FKSLEKVLDRMRCEKRVVV-EKCFVVIFKAYGKAHLPEKAVGLFDRMAYEFECKRTVKSF 134

Query: 122 NTLLNPKLTCGKLDRMKELFQ--IMEKYV--SPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           N++LN  +  G   R  E +   I  K V  SP+  ++N++I        ++DA ++F +
Sbjct: 135 NSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLVIKTMCKVGLVDDAVQMFRD 194

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-------------------------KED 212
           M   + QP + T+ TL+ GLC   R+DEA+ L                         K D
Sbjct: 195 MPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGD 254

Query: 213 IMRVYNV---------KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
           + RV  +          P+   + +LI GLC  G+L  A+ + + MV  K   +   Y +
Sbjct: 255 LARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGT 314

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +I+ L K GR  +   +L  M+ERG   N   Y+ALISG  KE   + A  +  EM  K 
Sbjct: 315 IINGLVKQGRALDGARVLALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKE 374

Query: 324 CKANPISYNVILGGLCKDGK 343
           C+ N I Y+ ++ GLC+DGK
Sbjct: 375 CELNTIVYSAVIDGLCRDGK 394



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 158/300 (52%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+L ++L+I  + +  + D+  Q+   +   ++  P    +C ++    +A  ++ A+ +
Sbjct: 168 NVLTFNLVIKTMCKVGLVDDAVQMFRDMPV-SKCQPDVYTYCTLMDGLCKADRIDEAVSL 226

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            DEM       +   FN L+N     G L R+ +L   M  K  +P+  +YN LIHG  +
Sbjct: 227 LDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCL 286

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR-VDEALKLKEDIMRVYNVKPDG 223
             +LE A  + D MV  +  P +VT+GT+I GL  + R +D A  L     R Y+V  + 
Sbjct: 287 KGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHV--NE 344

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
            V+++LI GL   G+   A+ + +EM   + E++  +YS++I  L + G+ +E   +L E
Sbjct: 345 YVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSE 404

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M    CKPN+ TY++L+ GF +  +   A  +  +M       N + Y+V++ GLCKDGK
Sbjct: 405 MTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGK 464



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 128/263 (48%), Gaps = 4/263 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK-LDRMKE 139
           P E+ +  +I        LE+A+ + D M S      V  + T++N  +  G+ LD  + 
Sbjct: 272 PNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARV 331

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L  + E+    +   Y+ LI G     + ++A ++F EM  +  +   + +  +I GLC 
Sbjct: 332 LALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCR 391

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           + + DEAL++  + M     KP+   ++SL+KG    G    A+ + ++M +     +  
Sbjct: 392 DGKPDEALEVLSE-MTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEV 450

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YS LI  L K G+  E   +  +M  +GCKP+ V Y ++I+G       E A  + +EM
Sbjct: 451 CYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEM 510

Query: 320 GDKGCKANP--ISYNVILGGLCK 340
             +   + P  ++YN++L  LCK
Sbjct: 511 LCQEPDSQPDVVTYNILLNALCK 533


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 162/312 (51%), Gaps = 6/312 (1%)

Query: 36  EAHPLKPFRYNLLHYDLIIT---KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           E   ++    N++ Y+ +I    K+G+     +   IL +++ D  I P E+ F  +I  
Sbjct: 187 EDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADG-ICPNEVTFNILIDG 245

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPD 151
           + + + +  A+++F EM+   V+  V  +N+L+N     GK++    L  Q++   + P+
Sbjct: 246 FCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPN 305

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             ++N L++G   ++ ++ A ++FD+M K+ + P + T+  LI   C +  +++A  L  
Sbjct: 306 IITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYR 365

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            IM    V PD   +  LI GLC  G+L  A  +  EM    ++ D   Y+ LI +L   
Sbjct: 366 -IMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNK 424

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G   +   +L EM  +G KP+ +TYN +I G+CKE +  AA  +  +M   G  AN  +Y
Sbjct: 425 GEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATY 484

Query: 332 NVILGGLCKDGK 343
           NV++ G CK  K
Sbjct: 485 NVLIKGFCKKDK 496



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 143/282 (50%), Gaps = 8/282 (2%)

Query: 65  EMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124
           E  QIL  +  D+      II   ++  Y +        + F   S + ++++V   N L
Sbjct: 76  EQTQILLSVSGDS-FCANSIIVDILVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPL 134

Query: 125 LNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
           ++  +  G++  M+ ++ +++ + + P   S+NI+I+G     +L  A  + ++M  R +
Sbjct: 135 MSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGV 194

Query: 184 QPTLVTFGTLIYGLCLELRVDEALK----LKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
              ++T+ TLI G C   ++ +  K    LKE  MR   + P+   F  LI G C    +
Sbjct: 195 SANVITYNTLIDGYCKMGKIGKMYKADAILKE--MRADGICPNEVTFNILIDGFCKDKNV 252

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
           S A+ V  EM R  ++ +   Y+SLI+ L   G+ NE  A+  +M     KPN +T+NAL
Sbjct: 253 SAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNAL 312

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           ++GFCK +  + A  + D+M  +G   N  +YN+++   CKD
Sbjct: 313 LNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKD 354



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 45/80 (56%)

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           L+S L K G   +   + KEM  R  +P  +++N +I+G CK      A  I+++M  +G
Sbjct: 134 LMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRG 193

Query: 324 CKANPISYNVILGGLCKDGK 343
             AN I+YN ++ G CK GK
Sbjct: 194 VSANVITYNTLIDGYCKMGK 213


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 160/299 (53%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y +++  L +    D    +L++++   ++ P  +I+  +I    + + ++ AL +
Sbjct: 15  DLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ-GKLEPGVLIYNTIIDGLCKYKHMDDALNL 73

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           F EM +  ++  V  +++L++     G+  D  + L  ++E+ ++PD  +++ LI   V 
Sbjct: 74  FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 133

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L +A K++DEMVKR + P++VT+ +LI G C+  R+DEA ++ E  M   +  PD  
Sbjct: 134 EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE-FMVSKHCFPDVV 192

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LIKG C    +   + V  EM +  +  +   Y+ LI  LF+AG  +    I KEM
Sbjct: 193 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM 252

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  PN +TYN L+ G CK    E A  + + +     +    +YN+++ G+CK GK
Sbjct: 253 VSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 311



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 162/323 (50%), Gaps = 13/323 (4%)

Query: 21  ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
           AL LFK       + E   ++P   N++ Y  +I+ L     + +  ++L  +  + +I 
Sbjct: 70  ALNLFK-------EMETKGIRP---NVVTYSSLISCLCNYGRWSDASRLLSDM-IERKIN 118

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    F  +I  + +   L  A +++DEM   ++  ++  +++L+N      +LD  K++
Sbjct: 119 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 178

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ M  K+  PD  +YN LI G    +R+E+  +VF EM +R L    VT+  LI GL  
Sbjct: 179 FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 238

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
               D A ++ ++ M    V P+   + +L+ GLC  G+L  A+ V E + R K+E    
Sbjct: 239 AGDCDMAQEIFKE-MVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIY 297

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+ +I  + KAG+  +   +   +  +G KP+ V YN +ISGFC++   E A  +  EM
Sbjct: 298 TYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 357

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
            + G   N   YN ++    +DG
Sbjct: 358 KEDGTLPNSGCYNTLIRARLRDG 380



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 120/243 (49%), Gaps = 2/243 (0%)

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHG 161
           + + D M +   Q  +  +  ++N     G  D    L   ME+  + P    YN +I G
Sbjct: 1   MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 60

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
               + ++DA  +F EM  + ++P +VT+ +LI  LC   R  +A +L  D++    + P
Sbjct: 61  LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE-RKINP 119

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   F++LI      G+L  A  + +EMV+  I+     YSSLI+      R +E   + 
Sbjct: 120 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 179

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           + M  + C P+ VTYN LI GFCK +  E    +  EM  +G   N ++YN+++ GL + 
Sbjct: 180 EFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQA 239

Query: 342 GKC 344
           G C
Sbjct: 240 GDC 242


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 150/306 (49%), Gaps = 8/306 (2%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARL 98
           L+ F  N   Y +++  L R    DE + +L+++ +     P  ++F  +I G+  R RL
Sbjct: 315 LRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN-----PNVVLFNTLINGYVSRGRL 369

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
            E    M + M S      +  +NTL+      G L   +EL   M+ K   P+  +Y I
Sbjct: 370 DEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTI 429

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI       RLE+A  V DEM  + L    V +  LI  LC + +V +AL +  D M   
Sbjct: 430 LIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGD-MSSK 488

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             KPD   F SLI GLC V +   ALG+ ++M+ + +  +   Y++LI A  + G   E 
Sbjct: 489 GCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEA 548

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++ +M  RGC  + +TYN LI   C+  + E    + ++M  KG   N IS N+++ G
Sbjct: 549 LKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILING 608

Query: 338 LCKDGK 343
           LC+ G 
Sbjct: 609 LCRTGN 614



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 146/298 (48%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y ++I +  +    +E + +L ++     +    + +  +I    +   ++ AL M
Sbjct: 423 NVITYTILIDRFCKEGRLEEARNVLDEMS-GKGLALNAVGYNCLISALCKDEKVQDALNM 481

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           F +MSS   +  +  FN+L+       K +    L+Q ++ + V  +  +YN LIH  + 
Sbjct: 482 FGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLR 541

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +++A K+ ++M+ R      +T+  LI  LC    +++ L L ED+M    + P+  
Sbjct: 542 RGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMS-KGLNPNNI 600

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
               LI GLC  G +  AL    +M+   +  D   Y+SLI+ L K GR  E   +  ++
Sbjct: 601 SCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKL 660

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +  G  P+++TYN LIS  CKE  F+ A  +L    D G   N +++ +++    K+G
Sbjct: 661 QVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 718



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 160/333 (48%), Gaps = 46/333 (13%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I KLG A  F  +  +L Q+K +  IV +E +F  ++  YGRA L  +A ++  +M
Sbjct: 114 YYMLIDKLGAAGEFKTIDALLMQMKQEG-IVFRESLFILIMKHYGRAGLPGQATRLLLDM 172

Query: 110 SS-FNVQMTVKFFNTLLNPKLT--CGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSR 166
              ++ + T + +N +L+  L   C K+      ++++ K +SP   ++ +++    +  
Sbjct: 173 RGVYSCEPTFRSYNVVLDVLLAGNCPKVVP-NVFYEMLSKGISPTVYTFGVVMKALCLVN 231

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL------------------- 207
            ++ A  +  +M +    P  + + TLI+ L    RV+E L                   
Sbjct: 232 EVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFN 291

Query: 208 ----------KLKE-----DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
                     ++ E     D M +    P+   +  L+ GLC +G++  A      M+ +
Sbjct: 292 DAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEA-----RMLLN 346

Query: 253 KI-EMDAGIYSSLISALFKAGRKNEFPAILKE-MKERGCKPNSVTYNALISGFCKEEDFE 310
           K+   +  ++++LI+     GR +E  A++ E M   GC P+  TYN LI G CK+    
Sbjct: 347 KVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLV 406

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +A  +++EM  KGC+ N I+Y +++   CK+G+
Sbjct: 407 SARELMNEMQIKGCEPNVITYTILIDRFCKEGR 439



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 99/225 (44%), Gaps = 31/225 (13%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PD  ++N  IHG     R+ +A K+ D M+ R   P   T+G L++GLC   +VDEA  L
Sbjct: 285 PDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARML 344

Query: 210 KEDI-------------------------------MRVYNVKPDGQVFASLIKGLCAVGE 238
              +                               M      PD   + +LI GLC  G 
Sbjct: 345 LNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGY 404

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           L  A  +  EM     E +   Y+ LI    K GR  E   +L EM  +G   N+V YN 
Sbjct: 405 LVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNC 464

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           LIS  CK+E  + A  +  +M  KGCK +  ++N ++ GLCK  K
Sbjct: 465 LISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNK 509



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 107/231 (46%), Gaps = 2/231 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    F ++I    +    E AL ++ +M    V      +NTL++  L  G +    +L
Sbjct: 492 PDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKL 551

Query: 141 FQIMEKYVSP-DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
              M     P D  +YN LI     +  +E    +F++M+ + L P  ++   LI GLC 
Sbjct: 552 VNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCR 611

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
              +  AL+   D++    + PD   + SLI GLC  G    AL + +++  + I  DA 
Sbjct: 612 TGNIQHALEFLRDMIH-RGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAI 670

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
            Y++LIS   K G  ++   +L    + G  PN VT+  L+S F KE D E
Sbjct: 671 TYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 721


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/256 (32%), Positives = 141/256 (55%), Gaps = 20/256 (7%)

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-------VSPDAC 153
            AL  F  M       ++  FN LL+       L ++K   Q+   Y       +S D C
Sbjct: 52  HALHFFHLMMRSTPTPSLSSFNHLLS------GLAKIKHYSQVFSLYNQMRLSGLSSDRC 105

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           + NIL++      RL + +  F  +++R   P +VT+ TLI GLC+E R+ EA +L   +
Sbjct: 106 TLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRM 165

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD--KIEMDAG----IYSSLISA 267
            ++    PD   + +LIKGLC  G +++AL + +EM+ D  + E++       Y+ ++  
Sbjct: 166 QKL-GCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDG 224

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L K GR++E   + +EMK +G  P+ ++YN+LI GFC    +E +  +LDEM D+G + +
Sbjct: 225 LCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPD 284

Query: 328 PISYNVILGGLCKDGK 343
            +++NV++  LCK+GK
Sbjct: 285 MVTFNVLIDTLCKEGK 300



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 160/334 (47%), Gaps = 38/334 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y++I+  L +    DE +Q+  ++K    ++P  I + ++I  +  A   E + ++
Sbjct: 214 NVITYNIIVDGLCKVGREDEAKQLFEEMK-TQGMIPSIISYNSLIHGFCCAGKWEESKRL 272

Query: 106 FDEMSSFNVQMTVKFFNTLLN------------------------PKLTC---------- 131
            DEM    +Q  +  FN L++                        P L            
Sbjct: 273 LDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCM 332

Query: 132 -GKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
            G L+  +ELF  M  K   PD  SYN+LI+G   + ++E+A K+++EM+    +P ++T
Sbjct: 333 VGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVIT 392

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           + +L+ G+ L  +VD+A KL   +M+ + +  +   +   + GLC    L  A+ +  E+
Sbjct: 393 YDSLLKGIFLAGKVDDAKKLF-SVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTEL 451

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
                +++    + LI  L KAG+      + +++   G +PN VTY  +I GFC+E   
Sbjct: 452 KSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQV 511

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + A  ++ +M   GC  + I+YN ++ G  +  K
Sbjct: 512 DKANVLIQKMEANGCTPDIITYNTLMRGFYESNK 545



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 155/369 (42%), Gaps = 87/369 (23%)

Query: 28  PNPNP------------NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 75
           P+PNP            N T  H L  F     H  +  T       F+ +   L ++KH
Sbjct: 30  PSPNPQIAFFLRHCKTGNVTATHALHFF-----HLMMRSTPTPSLSSFNHLLSGLAKIKH 84

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
                     +  V   Y + RL          +SS    + +   N L N       ++
Sbjct: 85  ----------YSQVFSLYNQMRL--------SGLSSDRCTLNI-LLNCLCN-------VN 118

Query: 136 RMKELFQ----IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           R++E F     I+ +  SP+  +YN LI G  +  R+ +A ++F  M K    P +VT+G
Sbjct: 119 RLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYG 178

Query: 192 TLIYGLCLELRVDEALKLKEDIMR--------------VYNVKPDG-----------QVF 226
           TLI GLC    ++ ALKL ++++                YN+  DG           Q+F
Sbjct: 179 TLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLF 238

Query: 227 A---------------SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
                           SLI G C  G+   +  + +EM+   ++ D   ++ LI  L K 
Sbjct: 239 EEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKE 298

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G+  E   +L  M E G  P+ VTYN+LI GFC   D  +A  +   M  KGC+ + ISY
Sbjct: 299 GKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISY 358

Query: 332 NVILGGLCK 340
           NV++ G  K
Sbjct: 359 NVLINGYSK 367



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 125/252 (49%), Gaps = 8/252 (3%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-------PD 151
           +  A ++F  M        V  + TL+      G ++   +L Q M   +S       P+
Sbjct: 155 ISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPN 214

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +YNI++ G     R ++A ++F+EM  + + P+++++ +LI+G C   + +E+ +L +
Sbjct: 215 VITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLD 274

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           +++    ++PD   F  LI  LC  G++  A  +   M+   I  D   Y+SLI      
Sbjct: 275 EMLD-QGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMV 333

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G  N    +   M  +GC+P+ ++YN LI+G+ K    E A  + +EM   G + N I+Y
Sbjct: 334 GDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITY 393

Query: 332 NVILGGLCKDGK 343
           + +L G+   GK
Sbjct: 394 DSLLKGIFLAGK 405



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 81/175 (46%), Gaps = 5/175 (2%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           +AH +    Y    Y + +  L +     E  ++  +LK     +  E + C + G   +
Sbjct: 417 KAHGIAENSYT---YGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLC-K 472

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACS 154
           A  LE A ++F+++S+   +  V  +  +++     G++D+   L Q ME    +PD  +
Sbjct: 473 AGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIIT 532

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           YN L+ G   S +LE+  ++   M ++ + P  +T   ++  L  + +  E L L
Sbjct: 533 YNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHL 587


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 148/305 (48%), Gaps = 48/305 (15%)

Query: 81  PKEIIFCNVI-------GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133
           P +I F NV+       G  G ARL+      FDE+    ++ TV  FNTL++     G 
Sbjct: 245 PPKIYFFNVLMHGFCKAGDVGNARLV------FDEIPKRGLRPTVVSFNTLISGCCKSGD 298

Query: 134 LDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           ++    L  +ME + V PD  +++ LI+G     RL++   +FDEM  R L P  VTF T
Sbjct: 299 VEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTT 358

Query: 193 LIYGLCLELRVDEALK-----------------------------LKE-----DIMRVYN 218
           LI G C   +VD ALK                             LKE     + M    
Sbjct: 359 LIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASG 418

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           +KPD   F +LI G C  G++  AL +K  MV + IE+D   +++LIS L + GR ++  
Sbjct: 419 LKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAG 478

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +L +M   G KP+  TY  +I  FCK+ D +  F +L EM   G     ++YN ++ GL
Sbjct: 479 RMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGL 538

Query: 339 CKDGK 343
           CK G+
Sbjct: 539 CKQGQ 543



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 137/262 (52%), Gaps = 4/262 (1%)

Query: 84  IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP--KLTCGKLDRMKELF 141
           ++F  +I  Y  +     A+Q F  ++     + ++    LL    +L   +++R   L+
Sbjct: 177 LVFDALISAYVDSGFTPDAVQCFRLVTKNKFPVPIRGCENLLRRVVRLRPVEIERSWALY 236

Query: 142 -QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
            ++++    P    +N+L+HG   +  + +A  VFDE+ KR L+PT+V+F TLI G C  
Sbjct: 237 LEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKS 296

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
             V+E  +LK  +M    V PD   F++LI GLC  G L     + +EM    +  +   
Sbjct: 297 GDVEEGFRLK-GVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVT 355

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
           +++LI    K G+ +      + M  +G +P+ VTYNALI+G CK  D + A  +++EM 
Sbjct: 356 FTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMT 415

Query: 321 DKGCKANPISYNVILGGLCKDG 342
             G K + I++  ++ G CKDG
Sbjct: 416 ASGLKPDKITFTTLIDGCCKDG 437



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 82/194 (42%), Gaps = 28/194 (14%)

Query: 175 FDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGL 233
           F+ +  R   + TL ++ T+++ LCL   + +A  L   ++          +F+S+++ +
Sbjct: 106 FNHLASRPPFRHTLHSYCTMLHFLCLHRMLPQAHSLVSFLVSRKGTNSASTLFSSILRTM 165

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP--------------- 278
                   ++G+  + +     +D+G     +   F+   KN+FP               
Sbjct: 166 PRHHHHHHSVGLVFDALISAY-VDSGFTPDAVQC-FRLVTKNKFPVPIRGCENLLRRVVR 223

Query: 279 ----------AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
                     A+  E+ + G  P    +N L+ GFCK  D   A  + DE+  +G +   
Sbjct: 224 LRPVEIERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTV 283

Query: 329 ISYNVILGGLCKDG 342
           +S+N ++ G CK G
Sbjct: 284 VSFNTLISGCCKSG 297


>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
 gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 472

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 167/344 (48%), Gaps = 14/344 (4%)

Query: 2   PTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAK 61
           P+  I+L    R +KD + ++ +F +      +   H    F Y +L       +L  A 
Sbjct: 16  PSQVIKLM---RAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVL-------RLVSAN 65

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
            F   + ++ ++K +  +V ++I+     G YGR      +L++F +M  F+   + K +
Sbjct: 66  KFKAAEDLIVRMKIENCVVSEDILLSICRG-YGRVHRPFDSLRVFHKMKDFDCDPSQKAY 124

Query: 122 NTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG-CVVSRRLEDAWKVFDEMV 179
            T+L   +   +L+   + ++ M E  + P   S N+LI   C     ++   K+F EM 
Sbjct: 125 VTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMP 184

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           KR   P   T+GTLI GLC   R+DEA KL  +++   +  P    + SLI GLC    +
Sbjct: 185 KRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVE-KDCAPTVVTYTSLINGLCGSKNV 243

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A+   EEM    IE +   YSSL+  L K GR  +   + + M  RGC+PN VTY  L
Sbjct: 244 DEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTL 303

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I+G CKE+  + A  +LD M  +G K +   Y  ++ G C   K
Sbjct: 304 ITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISK 347



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 128/269 (47%), Gaps = 20/269 (7%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKE 139
           P    +  +I    R   ++ A ++F EM   +   TV  + +L+N       +D  M+ 
Sbjct: 190 PDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRY 249

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L ++  K + P+  +Y+ L+ G     R   A ++F+ M+ R  +P +VT+ TLI GLC 
Sbjct: 250 LEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCK 309

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E ++ EA++L  D M +  +KPD  ++  +I G CA+ +   A    +EM+        G
Sbjct: 310 EQKIQEAVELL-DRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMIL------GG 362

Query: 260 IYSSLISALFKAGRKNE--------FPA----ILKEMKERGCKPNSVTYNALISGFCKEE 307
           I  + ++        NE        +P+    +   M+ RG      T  +L+   CK+ 
Sbjct: 363 ITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKG 422

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILG 336
           +F+ A  ++DE+   GC  +  ++ +++G
Sbjct: 423 EFQKAVQLVDEIVTDGCIPSKGTWKLLIG 451


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/265 (32%), Positives = 139/265 (52%), Gaps = 5/265 (1%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MK 138
           VP  I +  +I  Y +A  +  AL + D MS   V   V  +NT+L      GKL + M+
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAME 225

Query: 139 ELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            L +++++   PD  +Y ILI        +  A K+ DEM  R   P +VT+  L+ G+C
Sbjct: 226 VLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
            E R+DEA+K   D M     +P+      +++ +C+ G    A  +  +M+R       
Sbjct: 286 KEGRLDEAIKFLND-MPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSV 344

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             ++ LI+ L + G       IL++M + GC+PNS++YN L+ GFCKE+  + A   L+ 
Sbjct: 345 VTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLER 404

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M  +GC  + ++YN +L  LCKDGK
Sbjct: 405 MVSRGCYPDIVTYNTMLTALCKDGK 429



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 148/300 (49%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKL-GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +++ Y+ I+  L    K+   M+ +   L+ D    P  I +  +I    R   + +A++
Sbjct: 203 DVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDC--YPDVITYTILIEATCRDSGVGQAMK 260

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCV 163
           + DEM        V  +N L+N     G+LD  +K L  +      P+  ++NI++    
Sbjct: 261 LLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMC 320

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            + R  DA K+  +M+++   P++VTF  LI  LC +  +  A+ + E  M  +  +P+ 
Sbjct: 321 STGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEK-MPKHGCQPNS 379

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             +  L+ G C   ++  A+   E MV      D   Y+++++AL K G+  +   IL +
Sbjct: 380 LSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ 439

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  +GC P  +TYN +I G  K      A  +LDEM  K  K + I+Y+ ++GGL ++GK
Sbjct: 440 LSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK 499



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 149/300 (49%), Gaps = 7/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERAL 103
           +++ Y++++  + +    DE  + L+ +          +I  N+I        R ++ A 
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSG--CQPNVITHNIILRSMCSTGRWMD-AE 329

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
           ++  +M       +V  FN L+N     G L R  ++ + M K+   P++ SYN L+HG 
Sbjct: 330 KLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGF 389

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
              ++++ A +  + MV R   P +VT+ T++  LC + +V++A+++    +      P 
Sbjct: 390 CKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ-LSSKGCSPV 448

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + ++I GL   G+   A+ + +EM    ++ D   YSSL+  L + G+ +E      
Sbjct: 449 LITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFH 508

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           E +  G +PN+VT+N+++ G CK    + A   L  M ++GCK    SY +++ GL  +G
Sbjct: 509 EFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEG 568



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 143/292 (48%), Gaps = 6/292 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           ND  +   +P   N++ +++I+  +     + + +++L  +       P  + F  +I F
Sbjct: 298 NDMPSSGCQP---NVITHNIILRSMCSTGRWMDAEKLLADMLRKG-FSPSVVTFNILINF 353

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPD 151
             R  LL RA+ + ++M     Q     +N LL+      K+DR  E  + M  +   PD
Sbjct: 354 LCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPD 413

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +YN ++       ++EDA ++ +++  +   P L+T+ T+I GL    +  +A+KL +
Sbjct: 414 IVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLD 473

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           + MR  ++KPD   ++SL+ GL   G++  A+    E  R  +  +A  ++S++  L K 
Sbjct: 474 E-MRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKT 532

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
            + +     L  M  RGCKP   +Y  LI G   E   + A  +L+E+ +KG
Sbjct: 533 RQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKG 584



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 106/211 (50%), Gaps = 8/211 (3%)

Query: 137 MKELFQIMEKYV----SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           ++E F+ +E  V     PD      LI G     +   A K+ + +      P ++T+  
Sbjct: 118 LEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNV 177

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           +I G C    ++ AL     ++   +V PD   + ++++ LC  G+L  A+ V + M++ 
Sbjct: 178 MISGYCKAGEINNALS----VLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQR 233

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
               D   Y+ LI A  +     +   +L EM++RGC P+ VTYN L++G CKE   + A
Sbjct: 234 DCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEA 293

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              L++M   GC+ N I++N+IL  +C  G+
Sbjct: 294 IKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324



 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 36/76 (47%)

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L + G   E    L+ M   G  P+ +    LI GFC+      A  IL+ +   G   +
Sbjct: 112 LVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPD 171

Query: 328 PISYNVILGGLCKDGK 343
            I+YNV++ G CK G+
Sbjct: 172 VITYNVMISGYCKAGE 187


>gi|302780869|ref|XP_002972209.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
 gi|300160508|gb|EFJ27126.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
          Length = 363

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 146/267 (54%), Gaps = 3/267 (1%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + + ++I  +     ++  L + +EM++      +  +NTL++     G++  + 
Sbjct: 6   IEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEVN 65

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            LF  M+ K+ +PD  +Y+ LI G     R+  A  +FD+M+K+   P +VTF TL+ G 
Sbjct: 66  RLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGY 125

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C    VD+A +L E+I+   +  PD   + SL+ G C V  +  A  V + M + + + +
Sbjct: 126 CNAGLVDDAERLLEEIV-ASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPN 184

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
             IY++LI A   AG+      +L+EM   G +PN++TY +LI GFC   D E A  +L+
Sbjct: 185 VVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHKMLE 244

Query: 318 EMG-DKGCKANPISYNVILGGLCKDGK 343
            +  ++ CKA+  +Y V++ GLC+ G+
Sbjct: 245 RLERNENCKADMFAYRVMMDGLCRTGR 271



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 116/235 (49%), Gaps = 2/235 (0%)

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRR 167
           M+ + ++  +  +N+L++       +D    L + M      PD  +YN LI G   + R
Sbjct: 1   MTIWGIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGR 60

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           + +  ++F EM  +   P ++T+  LI G C   R++ A  L +D+++   + PD   F 
Sbjct: 61  VPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAAL-PDVVTFP 119

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +L++G C  G +  A  + EE+V      D   Y+SL+    K  R  E   +LK M + 
Sbjct: 120 TLVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKG 179

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            C+PN V Y ALI  FC       A+ +L+EM   G + N I+Y  ++GG C  G
Sbjct: 180 ECQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTG 234



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 119/265 (44%), Gaps = 27/265 (10%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           +P  + F  ++  Y  A L++ A ++ +E+ + +    V  + +L++      K+ RM E
Sbjct: 112 LPDVVTFPTLVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFC---KVKRMVE 168

Query: 140 LFQIMEKYV----SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
             +++++       P+   Y  LI     + +   A+K+ +EMV   +QP  +T+ +LI 
Sbjct: 169 AHRVLKRMAKGECQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIG 228

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C    ++EA K+ E + R  N K D   +  ++ GLC  G +S AL + E + +    
Sbjct: 229 GFCGTGDLEEAHKMLERLERNENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTP 288

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
               IY +LI       RK               +PN+  Y A+I    +E   E A  +
Sbjct: 289 PRHDIYVALIRGEMTLSRKG--------------RPNAKVYEAVIQELAREGRHEKANAL 334

Query: 316 LDE-MGDKGCK-----ANPISYNVI 334
            DE +G+K  K      NP   N I
Sbjct: 335 SDELLGNKASKTRFVITNPHCVNTI 359



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%)

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M   G +PN VTYN+LI GFC     ++   +++EM   GC  +  +YN ++ GLCK G+
Sbjct: 1   MTIWGIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGR 60


>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
          Length = 912

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 153/296 (51%), Gaps = 6/296 (2%)

Query: 47  LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMF 106
           L  Y+ I+    +A      + +  Q+  +  + P    +  +I  Y +  ++E A  +F
Sbjct: 217 LFSYNAILGVFVKANRIMLARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAKNVF 276

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIME-KYVSPDACSYNILIHGCVV 164
           DEM     +  +  +NT++N     G ++  MK + Q+ E +   PD  +Y  LI G   
Sbjct: 277 DEMG---CKPNLVTYNTMINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYTTLIDGYCK 333

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              LE+A K  +EMV R  +P ++T+  +IYGLCL   VDEA ++    MR+  +K +  
Sbjct: 334 RGELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTR-MRLNGLKDNVA 392

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
              S++KGLC VG+L  A    +EMV   +E DA  Y  +++   K G+ ++  ++LKEM
Sbjct: 393 THTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEM 452

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           K RG  P+  ++NA+     +    + A  IL +M   GC  N +SY+ ++ GLCK
Sbjct: 453 KSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMKQLGCTPNFLSYSTVIDGLCK 508



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 117/253 (46%), Gaps = 5/253 (1%)

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSP 150
           YG    +  A+  F           +  +N +L   +   ++   + +F   + E  V P
Sbjct: 192 YGDRGDIRGAIHWFHRAKKMESGRCLFSYNAILGVFVKANRIMLARAVFDQIVKEGVVKP 251

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           D  +Y  +I G      +E+A  VFDEM     +P LVT+ T+I G C +  ++ A+K+ 
Sbjct: 252 DVSTYTTIIRGYCKMGMIENAKNVFDEM---GCKPNLVTYNTMINGFCKKGLMESAMKIV 308

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
           + +    +  PD   + +LI G C  GEL  A+   EEMV    E +   Y+++I  L  
Sbjct: 309 DQMTETEDCMPDTVTYTTLIDGYCKRGELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCL 368

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            G  +E   ++  M+  G K N  T+ +++ G C     + A   L EM   G +A+  +
Sbjct: 369 NGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKA 428

Query: 331 YNVILGGLCKDGK 343
           Y V++   CK GK
Sbjct: 429 YGVVVNEYCKIGK 441



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/302 (20%), Positives = 125/302 (41%), Gaps = 37/302 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ Y+ +I    +  + +   +I+ Q+      +P  + +  +I  Y +   LE A++ 
Sbjct: 284 NLVTYNTMINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYTTLIDGYCKRGELEEAMKY 343

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            +EM S N +  V  +N ++      G +D  K +   M    +  +  ++  ++ G  V
Sbjct: 344 MEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCV 403

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI----------- 213
             +L+DA +   EMV   ++     +G ++   C   + D+A+ L +++           
Sbjct: 404 VGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSS 463

Query: 214 -----------------------MRVYNVKPDGQVFASLIKGLC-AVGELSLALGVKEEM 249
                                  M+     P+   ++++I GLC A G +       ++M
Sbjct: 464 FNAVFRILVESGKTDKAGLILRQMKQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDM 523

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF-CKEED 308
            R+   +DA +YS L+    + G  +    +  EM + G   N  ++ A + G   KE+ 
Sbjct: 524 CRNGHHLDASMYSWLVKGYCEDGNADMAMRLFCEMLDMGYVINLESFLAFVKGLSAKEKA 583

Query: 309 FE 310
           FE
Sbjct: 584 FE 585



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 110/250 (44%), Gaps = 16/250 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLK----HDTRIVPKEII--FCNVIGFYGRARLL 99
           N+L Y+ II  L      DE ++++ +++     D       I+   C V+G       L
Sbjct: 355 NVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLC-VVG------KL 407

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNIL 158
           + A +   EM    ++   K +  ++N     GK D    L + M+ + ++P   S+N +
Sbjct: 408 DDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAV 467

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC-LELRVDEALKLKEDIMRVY 217
               V S + + A  +  +M +    P  +++ T+I GLC  + R+ E  +  +D+ R  
Sbjct: 468 FRILVESGKTDKAGLILRQMKQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDMCRNG 527

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           +   D  +++ L+KG C  G   +A+ +  EM+     ++   + + +  L    +  E 
Sbjct: 528 H-HLDASMYSWLVKGYCEDGNADMAMRLFCEMLDMGYVINLESFLAFVKGLSAKEKAFEV 586

Query: 278 PAILKEMKER 287
               +EM  R
Sbjct: 587 EKFFEEMSRR 596


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 152/290 (52%), Gaps = 11/290 (3%)

Query: 56  KLGRA-KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNV 114
           +LGRA   F++M+ +         +VP  +I+  +I  Y R   +  AL+M +EM     
Sbjct: 379 ELGRALAYFEKMKGV--------GLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGC 430

Query: 115 QMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWK 173
            M V  +NTLLN       LD   ELF +++E+ V PD  +   LIHG      +  A  
Sbjct: 431 VMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALS 490

Query: 174 VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGL 233
           +F+ M  R L+P +VT+ TL+ G C    +++A +L  D++    + P    F+ LI G 
Sbjct: 491 LFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMIS-REIFPSYISFSILINGF 549

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           C++G +S A  + +EM    I+      +++I    +AG  ++    L  M   G  P+ 
Sbjct: 550 CSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDC 609

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +TYN LI+ F KEE+F+ AF +++ M ++G   N ++YN ILGG  + G+
Sbjct: 610 ITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGR 659



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 145/293 (49%), Gaps = 5/293 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQMFDE 108
           +DL+I    +A+   E  +    L+     V   I  CN ++G   +   ++ A +++++
Sbjct: 157 FDLLIRTYVQARKLREGSEAFQLLRKRGFCV--SINACNALLGAIVKVGWVDLAWKVYED 214

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMK-ELFQIMEKYVSPDACSYNILIHGCVVSRR 167
                  + V   N ++N     GKLD +   L ++ EK V  D  +YN L++       
Sbjct: 215 FVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGL 274

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           + +A+ + D M  + L+P L T+  LI GLC E   + A ++ ++++ V  + P+   F 
Sbjct: 275 VSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGV-GLCPNAATFN 333

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            ++   C   ++  A  V  EM++  +  D   +SS++    + G      A  ++MK  
Sbjct: 334 PMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGV 393

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           G  P++V Y  LI+G+C+ +D   A  + +EM ++GC  + ++YN +L GLC+
Sbjct: 394 GLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCR 446



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 144/281 (51%), Gaps = 7/281 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ ++  L R KM D+  ++  ++  +  + P       +I  Y +   + +AL +
Sbjct: 433 DVVTYNTLLNGLCRGKMLDDADELFKEMV-ERGVFPDFYTLTTLIHGYCKDGNMTKALSL 491

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIHGCVV 164
           F+ M+  +++  V  +NTL++     G++++ KEL + ++ + + P   S++ILI+G   
Sbjct: 492 FETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCS 551

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE--DIMRVYNVKPD 222
              + +A++++DEM ++ ++PTLVT  T+I G    LR     K  +  + M    V PD
Sbjct: 552 LGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGY---LRAGNLSKANDFLNTMISEGVPPD 608

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + +LI           A  +   M    +  +   Y++++    + GR  E   +L 
Sbjct: 609 CITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLH 668

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +M ++G  P+  TY +LI+G+  +++ + AF + DEM  +G
Sbjct: 669 KMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRG 709



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 111/230 (48%), Gaps = 8/230 (3%)

Query: 118 VKFFNTLLNPKLTCGKLDRMKELFQIMEKY---VSPDACSYNILIHGCVVSRRLEDAWKV 174
           V  F+ L+   +   KL    E FQ++ K    VS +AC  N L+   V    ++ AWKV
Sbjct: 154 VVVFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINAC--NALLGAIVKVGWVDLAWKV 211

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDE-ALKLKEDIMRVYNVKPDGQVFASLIKGL 233
           +++ VK      + T   ++  LC + ++D   + L E  M    V  D   + +L+   
Sbjct: 212 YEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSE--MEEKGVYADLVTYNTLVNAY 269

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           C  G +S A G+ + M    ++     Y++LI+ L K G       +L EM   G  PN+
Sbjct: 270 CRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNA 329

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            T+N ++   C++ED   A  + +EM  +G   + IS++ I+G   ++G+
Sbjct: 330 ATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGE 379



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 97/216 (44%), Gaps = 21/216 (9%)

Query: 148 VSPDACSYNILIHGCVVSRRLEDAW---------------KVFDEMVKRRLQPTLVTFGT 192
            SP+      LIH  V S++L +A                +V D ++             
Sbjct: 95  TSPNPSIIATLIHFLVQSKKLPEAQSLLLRIIRKSGVSHVEVIDSLISTSSSNLNSNQNV 154

Query: 193 LIYGLCLELRVDEALKLKE-----DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           +++ L +   V +A KL+E      ++R            +L+  +  VG + LA  V E
Sbjct: 155 VVFDLLIRTYV-QARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYE 213

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           + V+    ++    + +++AL K G+ +     L EM+E+G   + VTYN L++ +C+  
Sbjct: 214 DFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRG 273

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               AF ++D M  KG K    +YN ++ GLCK+G 
Sbjct: 274 LVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGS 309



 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 69/146 (47%), Gaps = 2/146 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  +  L+  + II    RA    +    L+ +  +  + P  I +  +I  + +    +
Sbjct: 568 KGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEG-VPPDCITYNTLINSFVKEENFD 626

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNILI 159
           RA  + + M    +   +  +N +L      G++   +  L ++++K ++PD  +Y  LI
Sbjct: 627 RAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLI 686

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQP 185
           +G V    +++A++V DEM++R   P
Sbjct: 687 NGYVSKDNMKEAFRVHDEMLQRGFVP 712


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 144/283 (50%), Gaps = 10/283 (3%)

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
           MFD M ++ ++        P  +I+  +I    +++ ++ AL + + M    ++     +
Sbjct: 173 MFDRMVEMGYE--------PNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTY 224

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           N+L++     G+ D    +   M K  + PD  ++N LI  CV   R+ +A ++++EM++
Sbjct: 225 NSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIR 284

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           R L P +VT+  LIYGLC+  R+DEA ++    M      PD   ++ LI G C   ++ 
Sbjct: 285 RSLDPDIVTYSLLIYGLCMYSRLDEAEQMF-GFMVSKGCFPDVVTYSILINGYCKSKKVE 343

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
             + +  EM +  +  +   Y+ LI    +AG+ N    I K M   G  PN +TYN L+
Sbjct: 344 HGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLL 403

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            G C     E A  IL +M   G  A+ ++YN+I+ G+CK G+
Sbjct: 404 HGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGE 446



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 143/293 (48%), Gaps = 5/293 (1%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQMFDEMSS 111
           +++ + + K +D +  +  Q++     +P  +  CN++   + R   L  AL    +M  
Sbjct: 87  LLSAISKMKKYDVVIYLWEQMQMLG--IPHNLCTCNILLNCFCRCSQLSLALSFLGKMMK 144

Query: 112 FNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLED 170
              +  +  F +LLN      ++ D +    +++E    P+   YN +I G   S+++++
Sbjct: 145 LGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDN 204

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           A  + + M    ++P  VT+ +LI GLC   R D+A ++    M    + PD   F +LI
Sbjct: 205 ALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVS-CMTKREIYPDVFTFNALI 263

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
                 G +S A  + EEM+R  ++ D   YS LI  L    R +E   +   M  +GC 
Sbjct: 264 DACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCF 323

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           P+ VTY+ LI+G+CK +  E    +  EM  +G   N ++Y V++ G C+ GK
Sbjct: 324 PDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGK 376



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 153/298 (51%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ II  L ++K  D    +L++++ D  I P  + + ++I     +   + A +M
Sbjct: 185 NVVIYNTIIDGLCKSKQVDNALDLLNRMEVDG-IRPDAVTYNSLISGLCNSGRWDDATRM 243

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
              M+   +   V  FN L++  +  G++   +EL++ ++ + + PD  +Y++LI+G  +
Sbjct: 244 VSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCM 303

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             RL++A ++F  MV +   P +VT+  LI G C   +V+  +KL  + M    V  +  
Sbjct: 304 YSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCE-MSQRGVVRNTV 362

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LI+G C  G+L++A  + + MV   +  +   Y+ L+  L   G+  +   IL +M
Sbjct: 363 TYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADM 422

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++ G   + VTYN +I G CK  +   A+ +   +  KG   +  +Y  ++ GL K G
Sbjct: 423 QKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKG 480


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 167/327 (51%), Gaps = 14/327 (4%)

Query: 24  LFKNPNPNP-----NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL-KHDT 77
           LFK+ NP+       + E+  +KP    ++ Y+ +I+ L ++   ++ +++L ++ +   
Sbjct: 107 LFKDGNPDQAVKLFENMESSRVKP---EIVTYNTVISGLCKSGNLEKARELLEEMIRKGG 163

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           +  P  + +  +I  + RA  +  A    ++M +  +   V   N L++     G ++  
Sbjct: 164 KSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEA 223

Query: 138 KELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
            E+   M+     PD  +YN +IH   V+ ++ +A ++   M      P LVTF TL+ G
Sbjct: 224 LEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTM---SCSPDLVTFNTLLDG 280

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
            C    +  AL++ E++ R  N+ PD   +  L+ GLC VG++ +A  + EE+VR     
Sbjct: 281 FCKAGMLPRALEVLEEMCR-ENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIP 339

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           D   Y+SL+  L K+G   E   ++KEM  RGC+   V Y++L+SG+C+  +   A  IL
Sbjct: 340 DVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREIL 399

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
            EM          +YN++LGGL KDG 
Sbjct: 400 AEMVSINMVPPLFTYNIVLGGLIKDGS 426



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 158/334 (47%), Gaps = 17/334 (5%)

Query: 13  RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ 72
           R    P LA+Q F           A     +++++  Y+ ++  L ++       ++   
Sbjct: 2   RRSSRPDLAIQFFD---------WAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKD 52

Query: 73  LKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132
           L H +   P  + F  +I    +A    RAL+    +  F+V   V  FN L++     G
Sbjct: 53  LLH-SGCSPNLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDG 111

Query: 133 KLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR--RLQPTLVT 189
             D+  +LF+ ME   V P+  +YN +I G   S  LE A ++ +EM+++  +  P +VT
Sbjct: 112 NPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVT 171

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           + TLI       R+ EA   +E  M+   + PD      L+ G+C  G++  AL + + M
Sbjct: 172 YNTLINAFYRASRIREACAFREK-MKAAGINPDVLTCNILVSGICKDGDVEEALEILDGM 230

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
                  D   Y+S+I AL  AG+  E   ILK M    C P+ VT+N L+ GFCK    
Sbjct: 231 KLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMS---CSPDLVTFNTLLDGFCKAGML 287

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             A  +L+EM  +    + I+Y +++ GLC+ G+
Sbjct: 288 PRALEVLEEMCRENILPDVITYTILVNGLCRVGQ 321



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 145/299 (48%), Gaps = 6/299 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ II  L  A    E  +IL  +       P  + F  ++  + +A +L RAL++
Sbjct: 238 DVITYNSIIHALCVAGKVVEAAEILKTMS----CSPDLVTFNTLLDGFCKAGMLPRALEV 293

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
            +EM   N+   V  +  L+N     G++     L + I+ +   PD  +Y  L+ G   
Sbjct: 294 LEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCK 353

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S  +E+A K+  EM  R  +  +V + +L+ G C    V +A ++  +++ + N+ P   
Sbjct: 354 SGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSI-NMVPPLF 412

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  ++ GL   G +S A+ +  ++V      D   Y++LI  L KA R  E   +  EM
Sbjct: 413 TYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEM 472

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             RGC PN VT  +++ G C+    + A++++ EM  K    N + Y  ++ GLCK  +
Sbjct: 473 ASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDR 531



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 6/237 (2%)

Query: 84  IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ- 142
           +++ +++  Y RA  + +A ++  EM S N+   +  +N +L   +  G + +   L   
Sbjct: 377 VMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISD 436

Query: 143 -IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
            +   YV PD  +YN LI G   + R+ +A  + DEM  R   P  VT G++++GLC   
Sbjct: 437 LVARGYV-PDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVG 495

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
           RVD+A  L  ++ R  +  P+  V+ SLI GLC    +  A  V + M    + +D   Y
Sbjct: 496 RVDDAWSLVVEMSRKRHA-PNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAY 554

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             LI ++   GR  E  A+  EM  RG  P+  T   L         FE  +T L+E
Sbjct: 555 RKLIVSMSHGGRVAEAMAMYDEMVARGFLPDGSTSKTLEEAAMSNSVFE--WTNLEE 609



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 133/281 (47%), Gaps = 7/281 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR--IVPKEIIFCNVIGFYGRARLLERAL 103
           +++ Y +++  L R     ++Q   + L+   R   +P  I + +++    ++  +E A 
Sbjct: 305 DVITYTILVNGLCRVG---QVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAH 361

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGC 162
           ++  EMS    +  V  +++L++     G + + +E+  +++   + P   +YNI++ G 
Sbjct: 362 KLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGL 421

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
           +    +  A  +  ++V R   P +VT+ TLI GLC   RV EA  L ++ M      P+
Sbjct: 422 IKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADE-MASRGCFPN 480

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
                S++ GLC VG +  A  +  EM R +   +  +Y+SLI  L K+ R ++   +L 
Sbjct: 481 DVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLD 540

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
            M+ +G   +   Y  LI           A  + DEM  +G
Sbjct: 541 AMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVARG 581


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/263 (36%), Positives = 136/263 (51%), Gaps = 12/263 (4%)

Query: 85  IFCNVI--GFYGRARLLERALQMFDEMSS----FNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           +  NVI  GF    R+ E AL    EMS+    F  Q T   FNTL+N     G +    
Sbjct: 260 VSVNVIVHGFCKEGRV-EDALNFIQEMSNQDGFFPDQYT---FNTLVNGLCKAGHVKHAI 315

Query: 139 ELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           E+  +M ++   PD  +YN +I G      +++A +V D+M+ R   P  VT+ TLI  L
Sbjct: 316 EIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTL 375

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C E +V+EA +L   ++    + PD   F SLI+GLC      +A+ + EEM     E D
Sbjct: 376 CKENQVEEATELAR-VLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPD 434

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+ LI +L   G+ +E   +LK+M+  GC  + +TYN LI GFCK      A  I D
Sbjct: 435 EFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFD 494

Query: 318 EMGDKGCKANPISYNVILGGLCK 340
           EM   G   N ++YN ++ GLCK
Sbjct: 495 EMEVHGVSRNSVTYNTLIDGLCK 517



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 167/374 (44%), Gaps = 47/374 (12%)

Query: 3   TSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKM 62
           ++ ++L    R Q D   AL+LF   +  PN +    L         Y+ I+ +LGR+  
Sbjct: 48  STDVKLLDSLRSQPDDSAALRLFNLASKKPNFSPEPAL---------YEEILLRLGRSGS 98

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM-SSFNVQMTVKFF 121
           FD+M++IL  +K  +R       F  +I  Y +  L +  L + D M   F ++    F+
Sbjct: 99  FDDMKKILEDMK-SSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFY 157

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           N +LN  +    L  ++     M  + + PD  ++N+LI     + +L  A  + ++M  
Sbjct: 158 NRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPS 217

Query: 181 RRLQPTLVTFGT-----------------------------------LIYGLCLELRVDE 205
             L P   TF T                                   +++G C E RV++
Sbjct: 218 YGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVED 277

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           AL   +++       PD   F +L+ GLC  G +  A+ + + M+++  + D   Y+S+I
Sbjct: 278 ALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVI 337

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
           S L K G   E   +L +M  R C PN+VTYN LIS  CKE   E A  +   +  KG  
Sbjct: 338 SGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGIL 397

Query: 326 ANPISYNVILGGLC 339
            +  ++N ++ GLC
Sbjct: 398 PDVCTFNSLIQGLC 411



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 134/269 (49%), Gaps = 7/269 (2%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD--- 135
           I P    F  +I    RA  L  A+ M ++M S+ +    K F T++   +  G LD   
Sbjct: 185 IKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGAL 244

Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLI 194
           R++E  Q++E   S    S N+++HG     R+EDA     EM  +    P   TF TL+
Sbjct: 245 RIRE--QMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLV 302

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
            GLC    V  A+++  D+M      PD   + S+I GLC +GE+  A+ V ++M+    
Sbjct: 303 NGLCKAGHVKHAIEIM-DVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDC 361

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
             +   Y++LIS L K  +  E   + + +  +G  P+  T+N+LI G C   +   A  
Sbjct: 362 SPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAME 421

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + +EM  KGC+ +  +YN+++  LC  GK
Sbjct: 422 LFEEMRSKGCEPDEFTYNMLIDSLCSKGK 450



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 4/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y+ +I+ L +    +E  ++   L     I+P    F ++I      R    A+++
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKG-ILPDVCTFNSLIQGLCLTRNHRVAMEL 422

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           F+EM S   +     +N L++   + GKLD    + + ME    +    +YN LI G   
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + +  +A ++FDEM    +    VT+ TLI GLC   RV++A +L  D M +   KPD  
Sbjct: 483 ANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLM-DQMIMEGQKPDKY 541

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SL+   C  G++  A  + + M  +  E D   Y +LIS L KAGR      +L+ +
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI 601

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG-CKANPISYNVILGGLCKDG 342
           + +G       YN +I G  ++     A  +  EM ++     + +SY ++  GLC  G
Sbjct: 602 QMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGG 660



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 148/323 (45%), Gaps = 39/323 (12%)

Query: 56  KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ 115
           K G  K   E+  ++ Q  +D    P    + +VI    +   ++ A+++ D+M + +  
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYD----PDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCS 362

Query: 116 MTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKV 174
                +NTL++      +++   EL +++  K + PD C++N LI G  ++R    A ++
Sbjct: 363 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL 422

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL--------------------------- 207
           F+EM  +  +P   T+  LI  LC + ++DEAL                           
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482

Query: 208 --KLKE-----DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
             K +E     D M V+ V  +   + +LI GLC    +  A  + ++M+ +  + D   
Sbjct: 483 ANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYT 542

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
           Y+SL++   + G   +   I++ M   GC+P+ VTY  LISG CK    E A  +L  + 
Sbjct: 543 YNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQ 602

Query: 321 DKGCKANPISYNVILGGLCKDGK 343
            KG    P +YN ++ GL +  K
Sbjct: 603 MKGINLTPHAYNPVIQGLFRKRK 625


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 150/301 (49%), Gaps = 5/301 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            ++ + +II    +A    +      +++    + P E  +  V+    +ARL  +A ++
Sbjct: 6   TVVTWTIIIDGFCKANQLKQALACFEKMRE--FVAPNERTYNVVVNGLCKARLTSKAYEV 63

Query: 106 FDEM-SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDACSYNILIHGC 162
             EM    +V   +  ++T++N     G++DR  E+ +  +    ++PD  +Y  ++ G 
Sbjct: 64  LKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGL 123

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
               +++ A ++  EM  + ++P   TF  LI G C   +VDEALKL ++I+   + KPD
Sbjct: 124 CRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPD 183

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + +LI G C  G L  A+ +   M   K   +   YSSL+  L KAG  ++   + +
Sbjct: 184 VVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFR 243

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            M  +GC PN VTY  LI G C     +AA  ++DEM    C  + +SYN +L G C+ G
Sbjct: 244 RMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLG 303

Query: 343 K 343
           +
Sbjct: 304 R 304



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 147/305 (48%), Gaps = 3/305 (0%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LK    +   +  +IT    A+  DE  ++  ++   +   P  + +  +I  + ++  L
Sbjct: 141 LKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNL 200

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           E+A++M   M        V  +++LL+     G LD+  +LF+ M  K   P+  +Y  L
Sbjct: 201 EKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTL 260

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           IHG   + +++ A  + DEM      P  V++  L+ G C   R++EA +L ++ M   +
Sbjct: 261 IHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKE-MATKS 319

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEM-VRDKIEMDAGIYSSLISALFKAGRKNEF 277
             PD   +  L++G C    L  A  + E M     I+ D   YS +++   +A R  E 
Sbjct: 320 CLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEA 379

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
              ++EM  R   PN+VTY++LI G CK    + A  +L  M +K  + +  ++N ++G 
Sbjct: 380 AEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGA 439

Query: 338 LCKDG 342
           LC+ G
Sbjct: 440 LCRLG 444



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 123/230 (53%), Gaps = 2/230 (0%)

Query: 115 QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKV 174
           Q TV  +  +++      +L +    F+ M ++V+P+  +YN++++G   +R    A++V
Sbjct: 4   QPTVVTWTIIIDGFCKANQLKQALACFEKMREFVAPNERTYNVVVNGLCKARLTSKAYEV 63

Query: 175 FDEMVK-RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGL 233
             EM   + + P LVT+ T+I G C +  +D A ++  +++    + PD   + S++ GL
Sbjct: 64  LKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGL 123

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE-MKERGCKPN 292
           C  G++  A  +  EM    +E D   +S+LI+    A + +E   + KE +     KP+
Sbjct: 124 CRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPD 183

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            VTY ALI GFCK  + E A  +L  M  + C  N ++Y+ +L GLCK G
Sbjct: 184 VVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAG 233



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 139/298 (46%), Gaps = 10/298 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y  +I    +    D   +IL ++     I P  + + +V+    R   ++RA +M
Sbjct: 76  DLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEM 135

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDACSYNILIHGCV 163
             EM    V+     F+ L+       K+D   +L++  +      PD  +Y  LI G  
Sbjct: 136 VREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFC 195

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK--- 220
            S  LE A K+   M  R+  P +VT+ +L++GLC    +D+AL    D+ R    K   
Sbjct: 196 KSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQAL----DLFRRMTSKGCV 251

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   + +LI GLCA  ++  A  + +EM       D   Y++L+    + GR  E   +
Sbjct: 252 PNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQL 311

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD-KGCKANPISYNVILGG 337
            KEM  + C P+ +TY  L+ GFC     E A  +L+ M    G   + ++Y++++ G
Sbjct: 312 FKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAG 369



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 146/302 (48%), Gaps = 2/302 (0%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           ++ +++ Y  +I    ++   ++  ++L  ++   + VP  + + +++    +A  L++A
Sbjct: 180 WKPDVVTYTALIDGFCKSGNLEKAMKMLGVME-GRKCVPNVVTYSSLLHGLCKAGDLDQA 238

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILIHG 161
           L +F  M+S      V  + TL++      K+D  + L   M     P D  SYN L+ G
Sbjct: 239 LDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDG 298

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                R+E+A ++F EM  +   P  +T+  L+ G C   R++EA  L E++     + P
Sbjct: 299 YCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDP 358

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   ++ ++ G         A    +EM+   +  +A  YSSLI  L KAGR +    +L
Sbjct: 359 DVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVL 418

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           K M  +  +P+  T+N++I   C+  D + A+ +L  M   G +   ++Y  +L G  + 
Sbjct: 419 KNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRT 478

Query: 342 GK 343
           G+
Sbjct: 479 GR 480



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 134/276 (48%), Gaps = 4/276 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  ++  L +A   D+   +  ++      VP  + +  +I     A  ++ A  +
Sbjct: 218 NVVTYSSLLHGLCKAGDLDQALDLFRRMTSKG-CVPNVVTYTTLIHGLCAAHKVDAARLL 276

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            DEM++         +N LL+     G+++  K+LF+ M  K   PD  +Y  L+ G   
Sbjct: 277 MDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCN 336

Query: 165 SRRLEDAWKVFDEM-VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
           + RLE+A  + + M     + P +VT+  ++ G     R  EA +  ++++   NV P+ 
Sbjct: 337 ASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMI-ARNVAPNA 395

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             ++SLI GLC  G +  A+ V + MV  ++E   G ++S+I AL + G  +E   +L  
Sbjct: 396 VTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVA 455

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           M   G +P  VTY  L+ GF +    E A+ + + M
Sbjct: 456 MAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVM 491



 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           C+P  VT+  +I GFCK    + A    ++M +     N  +YNV++ GLCK
Sbjct: 3   CQPTVVTWTIIIDGFCKANQLKQALACFEKMREF-VAPNERTYNVVVNGLCK 53


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 160/304 (52%), Gaps = 5/304 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLL 99
           K F  +++ Y+++I  L    M D   +  +QL K + +  P  + +  +I        +
Sbjct: 155 KGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCK--PTVVTYTILIEATLLQGGI 212

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNIL 158
           + A+++ DEM   N+Q  +  +N+++      G +DR  ++   I  K  +PD  +YNIL
Sbjct: 213 DEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNIL 272

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           + G +   + E  +++  +MV R  +  +VT+  LI  +C + +V+E + L +D M+   
Sbjct: 273 LRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKD-MKKKG 331

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           +KPDG  +  LI  LC  G + LA+ V + M+ D    D   Y+++++ L K  R +E  
Sbjct: 332 LKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEAL 391

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           +I +++ E GC PN+ +YN++ S          A  ++ EM DKG   + I+YN ++  L
Sbjct: 392 SIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCL 451

Query: 339 CKDG 342
           C+DG
Sbjct: 452 CRDG 455



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 120/220 (54%), Gaps = 1/220 (0%)

Query: 124 LLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
           L++   T   +D+  ++  I+E +  PD  +YN +I G   + R++ A++V D M  +  
Sbjct: 98  LIHGLFTSKTIDKAIQVMHILENHGHPDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGF 157

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P +VT+  LI  LC    +D AL+ K  +++  N KP    +  LI+     G +  A+
Sbjct: 158 SPDIVTYNILIGSLCSRGMLDSALEFKNQLLK-ENCKPTVVTYTILIEATLLQGGIDEAM 216

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            + +EM+   ++ D   Y+S+I  + + G  +    I+  +  +G  P+ +TYN L+ G 
Sbjct: 217 KLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGL 276

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +  +EA + ++ +M  +GC+AN ++Y+V++  +C+DGK
Sbjct: 277 LNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGK 316



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 142/292 (48%), Gaps = 39/292 (13%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           +I  L  +K  D+  Q++H L++     P  I +  +I  + RA  ++ A Q+       
Sbjct: 98  LIHGLFTSKTIDKAIQVMHILENHGH--PDLIAYNAIITGFCRANRIDSAYQV------- 148

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAW 172
                                LDRMK       K  SPD  +YNILI G + SR + D+ 
Sbjct: 149 ---------------------LDRMKN------KGFSPDIVTYNILI-GSLCSRGMLDSA 180

Query: 173 KVF-DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIK 231
             F ++++K   +PT+VT+  LI    L+  +DEA+KL ++++ + N++PD   + S+I+
Sbjct: 181 LEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEI-NLQPDMFTYNSIIR 239

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           G+C  G +  A  +   +       D   Y+ L+  L   G+      ++ +M  RGC+ 
Sbjct: 240 GMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEA 299

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           N VTY+ LIS  C++   E    +L +M  KG K +   Y+ ++  LCK+G+
Sbjct: 300 NVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGR 351



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 144/298 (48%), Gaps = 9/298 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERAL 103
           ++  Y+ II  + R    D   QI+  +   ++    ++I  N++  G   + +  E   
Sbjct: 230 DMFTYNSIIRGMCREGYVDRAFQIISSIS--SKGYAPDVITYNILLRGLLNQGKW-EAGY 286

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
           ++  +M +   +  V  ++ L++     GK++    L + M+K  + PD   Y+ LI   
Sbjct: 287 ELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAAL 346

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
               R++ A +V D M+     P +V + T++  LC + R DEAL + E +  V    P+
Sbjct: 347 CKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEV-GCSPN 405

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL- 281
              + S+   L + G    ALG+  EM+   ++ D   Y+SLIS L + G  +E   +L 
Sbjct: 406 ASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLV 465

Query: 282 -KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             EM+   CKP+ V+YN ++ G CK      A  +L  M DKGC+ N  +Y  ++ G+
Sbjct: 466 DMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLIEGI 523



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 102/204 (50%), Gaps = 2/204 (0%)

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L  ++ K   PD      LIHG   S+ ++ A +V   +++    P L+ +  +I G C 
Sbjct: 80  LRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVM-HILENHGHPDLIAYNAIITGFCR 138

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R+D A ++  D M+     PD   +  LI  LC+ G L  AL  K +++++  +    
Sbjct: 139 ANRIDSAYQVL-DRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVV 197

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+ LI A    G  +E   +L EM E   +P+  TYN++I G C+E   + AF I+  +
Sbjct: 198 TYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSI 257

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             KG   + I+YN++L GL   GK
Sbjct: 258 SSKGYAPDVITYNILLRGLLNQGK 281


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 164/330 (49%), Gaps = 41/330 (12%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRI-VPKEIIFCNVIGFYGRARLLERALQMFDEM-S 110
           +I     +  F  + Q+  ++K + R+ + K  I   V   YG+A L E+A+++F  M  
Sbjct: 86  LIENYANSGDFGTLFQVFDRMKRERRVFIEKNFIL--VFRAYGKAHLPEKAIELFGRMVD 143

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM---EKYVSPDACSYNILIHGCVVSRR 167
            F  + TV+ FN++LN  +  G   R  E ++     +  +SP+  S+N++I        
Sbjct: 144 EFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGL 203

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL------------------ 209
           ++ A +VF EM  ++ +P + T+ TL+ GLC E R+DEA+ L                  
Sbjct: 204 VDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNV 263

Query: 210 -------KEDIMRVYNVK---------PDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
                  K D++RV  +          P+   + ++I GLC  G+L  A+ + + MV  K
Sbjct: 264 LINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASK 323

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
              +   Y +LI+ L K GR  +   +L  ++ERG   N   Y+ LISG  KEE  E A 
Sbjct: 324 CVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAM 383

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +  +M +KGC+ N + Y+ ++ GLC++GK
Sbjct: 384 GLWKKMVEKGCQPNIVVYSALIDGLCREGK 413



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 152/299 (50%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+L ++L+I  + +  + D   ++  ++    +  P    +C ++    +   ++ A+ +
Sbjct: 187 NVLSFNLVIKAMCKLGLVDRAIEVFREMAIQ-KCEPDVFTYCTLMDGLCKEDRIDEAVLL 245

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            DEM       +   FN L+N     G + R+ +L   M  K   P+  +YN +I+G  +
Sbjct: 246 LDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCL 305

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L+ A  + D MV  +  P  VT+GTLI GL  + R  + + L   +    +   +  
Sbjct: 306 KGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGH-HANEY 364

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +++LI GL    +   A+G+ ++MV    + +  +YS+LI  L + G+ +E   IL EM
Sbjct: 365 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 424

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +GC PN+ TY++LI GF K  + + A  +  EM    C  N I Y+V++ GLC+DGK
Sbjct: 425 VNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGK 483



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 131/266 (49%), Gaps = 8/266 (3%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK-LDRMK 138
           VP E+ +  +I        L++A+ + D M +         + TL+N  +  G+ +D + 
Sbjct: 290 VPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVH 349

Query: 139 ELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            L  + E+    +  +Y+ LI G     + E+A  ++ +MV++  QP +V +  LI GLC
Sbjct: 350 LLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLC 409

Query: 199 LELRVDEALKLKEDIMRVYN--VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
            E ++DEA   KE +  + N    P+   ++SLIKG    G    A+ V +EM ++    
Sbjct: 410 REGKLDEA---KEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVP 466

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +   YS LI  L + G+  E   +   M  RG +P+ V Y+++I G C     E    + 
Sbjct: 467 NEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLF 526

Query: 317 DEMGDKGCKANP--ISYNVILGGLCK 340
           +EM  +   + P  ++YN++L  LCK
Sbjct: 527 NEMLCQESDSQPDVVTYNILLRALCK 552



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 111/254 (43%), Gaps = 23/254 (9%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +++  +I    R   L+ A ++  EM +         +++L+      G   +   +
Sbjct: 396 PNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRV 455

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           ++ M K    P+   Y++LIHG     +L +A  ++  M+ R L+P +V + ++I+GLC 
Sbjct: 456 WKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCN 515

Query: 200 ELRVDEALKL-KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL---------GVKEEM 249
              V+  LKL  E + +  + +PD   +  L++ LC    +S A+         G   ++
Sbjct: 516 AGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDL 575

Query: 250 VRDKIEMDA------------GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           +   I ++A                 L+  L K  R      I++ M ++   PN+ T+ 
Sbjct: 576 ITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWE 635

Query: 298 ALISGFCKEEDFEA 311
            +I   CK +  +A
Sbjct: 636 RIIPELCKPKKVQA 649


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 160/304 (52%), Gaps = 9/304 (2%)

Query: 43  FRYNLLHYDLIITKL-GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLER 101
           F  N + Y+ +++ L    +M D   Q L++        P  + +  ++  + +   L+ 
Sbjct: 6   FWPNRITYNALLSGLCNGGRMSD--AQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDE 63

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIH 160
           AL++FD          V  +N L+N      KLD  + + Q M  + + PD  +YN L++
Sbjct: 64  ALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVN 123

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR-VDEALKLKEDIMRVYNV 219
           G   + R+++A  +   +V +   P ++T+ TLI GLC ELR V EALKL   +++    
Sbjct: 124 GLCKNGRVDEARML---IVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLK-QGY 179

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +P+   +  LI GL     ++ A  +   +V+  +E DA  Y+  I  L KAGR  +   
Sbjct: 180 EPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALL 239

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +LK+M E+GC P+ V++NA+I+G CKE+  + A  +L  M  KGC  N IS+N ++ G C
Sbjct: 240 MLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQC 299

Query: 340 KDGK 343
           + GK
Sbjct: 300 RAGK 303



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 145/262 (55%), Gaps = 4/262 (1%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           VP  + +  +I  + +A  L+ A ++   M S N+   V  +N+L+N     G++D  + 
Sbjct: 77  VPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARM 136

Query: 140 LFQIMEKYVSPDACSYNILIHG-CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L  I++K  SP+  +Y+ LI G C   R + +A K+F  ++K+  +P + T+  LI GL 
Sbjct: 137 L--IVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLL 194

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
            E RV+EA +L   +++ + ++PD   +   I GLC  G +  AL + ++M       D 
Sbjct: 195 KEDRVNEAFELFSGLVK-HGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDV 253

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             ++++I+ L K  R +E   +L  M+ +GC PN++++N LI G C+   ++ A T   E
Sbjct: 254 VSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKE 313

Query: 319 MGDKGCKANPISYNVILGGLCK 340
           M  +G K   ++YN+++ GLCK
Sbjct: 314 MLKRGVKPTVVTYNILVDGLCK 335



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 144/302 (47%), Gaps = 16/302 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           +++ Y+ ++  L +    DE + ++     D    P  I +  +I G     R +  AL+
Sbjct: 114 DVVTYNSLVNGLCKNGRVDEARMLIV----DKGFSPNVITYSTLISGLCRELRGVSEALK 169

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV----SPDACSYNILIH 160
           +F  +     +  V  +N L++  L   K DR+ E F++    V     PDA +Y + I 
Sbjct: 170 LFGSVLKQGYEPEVPTYNILIDGLL---KEDRVNEAFELFSGLVKHGLEPDAITYTVFID 226

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G   + R+EDA  +  +M ++   P +V+   +I GLC E RVDEA  L    M      
Sbjct: 227 GLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSG-MEAKGCS 285

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA---GRKNEF 277
           P+   F +LI G C  G+   A+   +EM++  ++     Y+ L+  L KA   GR  E 
Sbjct: 286 PNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEA 345

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +   M E+G  P+ VTY+ALI G  K    + A  +L  M  KGC  N  +YN ++ G
Sbjct: 346 ITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISG 405

Query: 338 LC 339
           LC
Sbjct: 406 LC 407



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 157/307 (51%), Gaps = 8/307 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLL 99
           + F  +++ Y+ +I    +A   DE Q+IL ++  +  +VP  + + +++ G     R+ 
Sbjct: 74  RGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSEN-LVPDVVTYNSLVNGLCKNGRVD 132

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILI 159
           E  + + D+  S NV +T     + L  +L  G  + +K    ++++   P+  +YNILI
Sbjct: 133 EARMLIVDKGFSPNV-ITYSTLISGLCRELR-GVSEALKLFGSVLKQGYEPEVPTYNILI 190

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G +   R+ +A+++F  +VK  L+P  +T+   I GLC   RV++AL + +D M     
Sbjct: 191 DGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKD-MDEKGC 249

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD     ++I GLC    +  A  +   M       +A  +++LI    +AG+  +   
Sbjct: 250 VPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMT 309

Query: 280 ILKEMKERGCKPNSVTYNALISGFCK---EEDFEAAFTILDEMGDKGCKANPISYNVILG 336
             KEM +RG KP  VTYN L+ G CK   E   + A T+ D M +KG   + ++Y+ ++ 
Sbjct: 310 TFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALID 369

Query: 337 GLCKDGK 343
           GL K GK
Sbjct: 370 GLGKAGK 376



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 126/257 (49%), Gaps = 8/257 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDE 108
           Y+++I  L +    +E  ++   L KH   + P  I +   I    +A  +E AL M  +
Sbjct: 186 YNILIDGLLKEDRVNEAFELFSGLVKHG--LEPDAITYTVFIDGLCKAGRVEDALLMLKD 243

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRR 167
           M        V   N ++N      ++D  + L   ME K  SP+A S+N LI G   + +
Sbjct: 244 MDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGK 303

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC---LELRVDEALKLKEDIMRVYNVKPDGQ 224
            + A   F EM+KR ++PT+VT+  L+ GLC    E R+ EA+ L + ++    V PD  
Sbjct: 304 WKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRV-PDVV 362

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +++LI GL   G+L  A  +   M       +   Y+SLIS L    + +E   +   M
Sbjct: 363 TYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAM 422

Query: 285 KERGCKPNSVTYNALIS 301
            E+GC P+++TY  +IS
Sbjct: 423 VEKGCVPDTITYGTIIS 439



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 4/164 (2%)

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M K    P  +T+  L+ GLC   R+ +A  L E +++     PD   + +L+ G C VG
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKA-GYSPDVVTYNTLLHGFCKVG 59

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           EL  AL + +  V+     D   Y++LI+   KA + +E   IL+ M      P+ VTYN
Sbjct: 60  ELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYN 119

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           +L++G CK    + A  ++    DKG   N I+Y+ ++ GLC++
Sbjct: 120 SLVNGLCKNGRVDEARMLIV---DKGFSPNVITYSTLISGLCRE 160



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 70/130 (53%)

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           MR +   P+   + +L+ GLC  G +S A  + E M++     D   Y++L+    K G 
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +E   I     +RG  P+ VTYNALI+GFCK +  + A  IL  M  +    + ++YN 
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 334 ILGGLCKDGK 343
           ++ GLCK+G+
Sbjct: 121 LVNGLCKNGR 130



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 9/234 (3%)

Query: 38  HPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           H L+P   + + Y + I  L +A   ++   +L  +  +   VP  +    VI    + +
Sbjct: 212 HGLEP---DAITYTVFIDGLCKAGRVEDALLMLKDM-DEKGCVPDVVSHNAVINGLCKEK 267

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYN 156
            ++ A  +   M +         FNTL+  +   GK  +    F +++++ V P   +YN
Sbjct: 268 RVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYN 327

Query: 157 ILIHGCVVSR---RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           IL+ G   +R   R+++A  +FD M+++   P +VT+  LI GL    ++D+A +L    
Sbjct: 328 ILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLL-GA 386

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           M      P+   + SLI GLC + ++  AL +   MV      D   Y ++ISA
Sbjct: 387 MEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTIISA 440


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 156/300 (52%), Gaps = 6/300 (2%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ +++ Y  ++  L  A+ +D+++ +  ++  D + VP E+ F  ++ F+ R  ++ERA
Sbjct: 242 FQPDIVSYTTVLKGLCAARRWDDVKVLFAEMV-DKKCVPNEVTFDMLVRFFCRGGMVERA 300

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
           +Q+  +MS           N ++N     G++D   +    M  Y  +PD  SY  ++ G
Sbjct: 301 IQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRG 360

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              + R E A ++  EMV++   P  VTF T I  LC +  +++A+KL E +M  Y    
Sbjct: 361 LCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIE-LMPEYGCSV 419

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
               + +L+ G C  G +  AL +   +     E +   Y++L++ L  A R +    +L
Sbjct: 420 GIVTYNALVHGFCVQGRVDSALELFNNL---PCEPNTITYTTLLTGLCHAERLDAAAELL 476

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             M ++ C  N+VT+N L+S FC++   E A  ++++M + GC  N I++N +L G+ KD
Sbjct: 477 AGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKD 536



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 138/307 (44%), Gaps = 8/307 (2%)

Query: 39  PLKPFRYNLLHYDLIITKL-GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           P+ P  Y    Y  II  L  R ++ D +  +   L+   +  P  + +  ++    ++ 
Sbjct: 136 PVPPDAYT---YTPIIRGLCDRGRVGDALALLDDMLQRGCQ--PSVVTYTVLLEAVCKSS 190

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYN 156
               A+ + DEM +      +  +N ++N     G++D  KE+   +  Y   PD  SY 
Sbjct: 191 GFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYT 250

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            ++ G   +RR +D   +F EMV ++  P  VTF  L+   C    V+ A+++ +  M  
Sbjct: 251 TVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQ-MSQ 309

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           +   P+  +   +I  +C  G +  A      M       D   Y++++  L +AGR   
Sbjct: 310 HGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEH 369

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +L EM  + C PN VT+N  I   C++   E A  +++ M + GC    ++YN ++ 
Sbjct: 370 AKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVH 429

Query: 337 GLCKDGK 343
           G C  G+
Sbjct: 430 GFCVQGR 436



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 3/223 (1%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           +NTL+      G+LD  + L   M   V PDA +Y  +I G     R+ DA  + D+M++
Sbjct: 112 YNTLVAGYCRYGRLDAARRLIASMP--VPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQ 169

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           R  QP++VT+  L+  +C      EA+ + ++ MR     P+   +  +I G+C  G + 
Sbjct: 170 RGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDE-MRAKGCTPNIVTYNVIINGMCREGRVD 228

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  +   +     + D   Y++++  L  A R ++   +  EM ++ C PN VT++ L+
Sbjct: 229 DAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLV 288

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             FC+    E A  +L +M   GC  N    N+++  +CK G+
Sbjct: 289 RFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGR 331



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 138/297 (46%), Gaps = 4/297 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           + + Y  ++  L RA  ++  +++L ++       P E+ F   I    +  L+E+A+++
Sbjct: 350 DTISYTTVLRGLCRAGRWEHAKELLPEMVRKN-CPPNEVTFNTFICILCQKGLIEQAIKL 408

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
            + M  +   + +  +N L++     G++D   ELF  +     P+  +Y  L+ G   +
Sbjct: 409 IELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP--CEPNTITYTTLLTGLCHA 466

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            RL+ A ++   M+++      VTF  L+   C +  V+EA++L   +M  +   P+   
Sbjct: 467 ERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMME-HGCTPNLIT 525

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F +L+ G+        AL +   +V   + +D   YSS++  L +  R  E   +L  ++
Sbjct: 526 FNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQ 585

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + G +P    YN ++   CK  + + A      M   GC  N  +Y +++ GL  +G
Sbjct: 586 DMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEG 642



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 99/209 (47%), Gaps = 8/209 (3%)

Query: 135 DRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           D + E  +++E   S    PD      LI       R  DA +V            +  +
Sbjct: 53  DDLAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAY 112

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
            TL+ G C   R+D A +L   +     V PD   +  +I+GLC  G +  AL + ++M+
Sbjct: 113 NTLVAGYCRYGRLDAARRLIASM----PVPPDAYTYTPIIRGLCDRGRVGDALALLDDML 168

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
           +   +     Y+ L+ A+ K+    E   +L EM+ +GC PN VTYN +I+G C+E   +
Sbjct: 169 QRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 228

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLC 339
            A  IL+ +   G + + +SY  +L GLC
Sbjct: 229 DAKEILNRLSSYGFQPDIVSYTTVLKGLC 257



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 4/176 (2%)

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           L +A ++ +    R   P +     LI  LC   R  +A ++            D   + 
Sbjct: 55  LAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLR-TAEASGAPVDVFAYN 113

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +L+ G C  G L  A  +   M    +  DA  Y+ +I  L   GR  +  A+L +M +R
Sbjct: 114 TLVAGYCRYGRLDAARRLIASM---PVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQR 170

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           GC+P+ VTY  L+   CK   F  A  +LDEM  KGC  N ++YNVI+ G+C++G+
Sbjct: 171 GCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGR 226


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 155/300 (51%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKL-GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           NL+ Y+ +I  L G+ +M  E+ +++ +++    +VP E+ +  ++  + +   L + L 
Sbjct: 276 NLISYNSVINGLCGKGRM-SEVGELVEEMR-GKGLVPDEVTYNTLVNGFCKEGNLHQGLV 333

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCV 163
           +  EM    +   V  + TL+N     G L R  E+F Q+  + + P+  +Y  LI G  
Sbjct: 334 LLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFC 393

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
               + +A+KV  EM+     P++VT+  L++G C   RV EA+ +   ++    + PD 
Sbjct: 394 QKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVE-RGLPPDV 452

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             ++++I G C   EL  A  +KEEMV   +  D   YSSLI  L    +  E   + +E
Sbjct: 453 VSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFRE 512

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M  RG  P+ VTY +LI+ +C + +   A  + DEM  +G   + ++Y+V++ GL K  +
Sbjct: 513 MMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKAR 572



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 139/265 (52%), Gaps = 8/265 (3%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + +  +I    + + ++ A+ +   M+   V   +  +N+++N    CGK  RM 
Sbjct: 238 ISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVING--LCGK-GRMS 294

Query: 139 ELFQIME----KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           E+ +++E    K + PD  +YN L++G      L     +  EMV + L P +VT+ TLI
Sbjct: 295 EVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLI 354

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
             +C    +  A+++  D MRV  ++P+ + + +LI G C  G ++ A  V  EM+    
Sbjct: 355 NCMCKAGNLSRAVEIF-DQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGF 413

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
                 Y++L+      GR  E   IL+ M ERG  P+ V+Y+ +I+GFC+E +   AF 
Sbjct: 414 SPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQ 473

Query: 315 ILDEMGDKGCKANPISYNVILGGLC 339
           + +EM +KG   + ++Y+ ++ GLC
Sbjct: 474 MKEEMVEKGVLPDTVTYSSLIQGLC 498



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 146/313 (46%), Gaps = 18/313 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  + +A       +I  Q++    + P E  +  +I  + +  L+  A ++
Sbjct: 346 NVVTYTTLINCMCKAGNLSRAVEIFDQMR-VRGLRPNERTYTTLIDGFCQKGLMNEAYKV 404

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
             EM       +V  +N L++     G++     + + M E+ + PD  SY+ +I G   
Sbjct: 405 LSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCR 464

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            R L  A+++ +EMV++ + P  VT+ +LI GLCL+ ++ EA  L  ++MR   + PD  
Sbjct: 465 ERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMR-RGLPPDEV 523

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SLI   C  GELS AL + +EMV+     D   YS LI+ L K  R      +L ++
Sbjct: 524 TYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKL 583

Query: 285 KERGCKPNSVTYNALIS---------------GFCKEEDFEAAFTILDEMGDKGCKANPI 329
                 P+ VTYN LI                GFC +     A  +   M  +  K N  
Sbjct: 584 FYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAA 643

Query: 330 SYNVILGGLCKDG 342
            YN+++ G  + G
Sbjct: 644 IYNLMIHGHSRGG 656



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 124/264 (46%), Gaps = 7/264 (2%)

Query: 85  IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK-----LDRMKE 139
           +F  V+    R   + +AL +    +      TV  +N +L+  L          D  + 
Sbjct: 134 VFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAER 193

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           +F+ M +  VSP+  +YN++I G V    LE       +M K  + P +VT+ TLI   C
Sbjct: 194 VFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASC 253

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
            + +V EA+ L    M V  V  +   + S+I GLC  G +S    + EEM    +  D 
Sbjct: 254 KKKKVKEAMALLR-AMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDE 312

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y++L++   K G  ++   +L EM  +G  PN VTY  LI+  CK  +   A  I D+
Sbjct: 313 VTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQ 372

Query: 319 MGDKGCKANPISYNVILGGLCKDG 342
           M  +G + N  +Y  ++ G C+ G
Sbjct: 373 MRVRGLRPNERTYTTLIDGFCQKG 396



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 53/99 (53%)

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           V  +MVR+ +  +   Y+ +I  +   G   +    +++M++ G  PN VTYN LI   C
Sbjct: 194 VFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASC 253

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           K++  + A  +L  M   G  AN ISYN ++ GLC  G+
Sbjct: 254 KKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGR 292



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 2/133 (1%)

Query: 132 GKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           G ++    +F+ M ++   P+A  YN++IHG      +  A+ ++ E+         V  
Sbjct: 621 GLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAV 680

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
             L+  L  E   DE  +L ++I+R   +  D +V   L++     G +   L V  EM 
Sbjct: 681 IALVKALAREGMNDELSRLLQNILRSCRLN-DAKVAKVLVEVNFKEGNMDAVLNVLTEMA 739

Query: 251 RDKIEMDAGIYSS 263
           +D +  D GI+SS
Sbjct: 740 KDGLLPDGGIHSS 752


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 145/291 (49%), Gaps = 9/291 (3%)

Query: 54  ITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFN 113
           + K G+      + +IL     D+  VP  I +  +I  Y +   +  ALQ+ D MS   
Sbjct: 155 LCKTGKTWKATRVMEILE----DSGAVPDVITYNVLISGYCKTGEIGSALQLLDRMS--- 207

Query: 114 VQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAW 172
           V   V  +NT+L      GKL + M+ L + M++   PD  +Y ILI        +  A 
Sbjct: 208 VSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAM 267

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
           K+ DEM  +  +P +VT+  LI G+C E R+DEA++     M  Y  +P+      +++ 
Sbjct: 268 KLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNH-MPSYGCQPNVITHNIILRS 326

Query: 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
           +C+ G    A     EM+R         ++ LI+ L + G       +L++M + GC PN
Sbjct: 327 MCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPN 386

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           S++YN L+   CK++  E A   LD M  +GC  + ++YN +L  LCKDGK
Sbjct: 387 SLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGK 437



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 146/299 (48%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ I+  L  +    E  ++L + +      P  I +  +I    +   + +A+++
Sbjct: 211 DVVTYNTILRTLCDSGKLKEAMEVLDR-QMQRECYPDVITYTILIEATCKESGVGQAMKL 269

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            DEM     +  V  +N L+N     G+LD        M  Y   P+  ++NI++     
Sbjct: 270 LDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCS 329

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R  DA K   EM+++   P++VTF  LI  LC +  +  A+ + E  M  +   P+  
Sbjct: 330 TGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEK-MPQHGCTPNSL 388

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  L+  LC   ++  A+   + MV      D   Y++L++AL K G+ +    IL ++
Sbjct: 389 SYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQL 448

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +GC P  +TYN +I G  K    + A  +LDEM  KG K + I+Y+ ++GGL ++GK
Sbjct: 449 GSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGK 507



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 150/300 (50%), Gaps = 7/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERAL 103
           +++ Y+++I  + +    DE  + L+ +   +      +I  N+I        R ++ A 
Sbjct: 281 DVVTYNVLINGICKEGRLDEAIRFLNHMP--SYGCQPNVITHNIILRSMCSTGRWMD-AE 337

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
           +   EM       +V  FN L+N     G + R  ++ + M ++  +P++ SYN L+H  
Sbjct: 338 KFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHAL 397

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
              +++E A +  D MV R   P +VT+ TL+  LC + +VD A+++   +       P 
Sbjct: 398 CKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGS-KGCSPV 456

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + ++I GL  VG+   A+ + +EM    ++ D   YS+L+  L + G+ +E  A   
Sbjct: 457 LITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFH 516

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +++E G KPN++TYN+++ G CK      A   L  M  +GCK    SY +++ GL  +G
Sbjct: 517 DLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEG 576



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 109/211 (51%), Gaps = 8/211 (3%)

Query: 137 MKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           ++E F+ +E  V     PD  +   LI G   + +   A +V + +      P ++T+  
Sbjct: 126 LEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNV 185

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           LI G C    +  AL+L + +    +V PD   + ++++ LC  G+L  A+ V +  ++ 
Sbjct: 186 LISGYCKTGEIGSALQLLDRM----SVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQR 241

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
           +   D   Y+ LI A  K     +   +L EM+++GCKP+ VTYN LI+G CKE   + A
Sbjct: 242 ECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEA 301

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              L+ M   GC+ N I++N+IL  +C  G+
Sbjct: 302 IRFLNHMPSYGCQPNVITHNIILRSMCSTGR 332



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 136/279 (48%), Gaps = 3/279 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ +++I+  +     + + ++ L ++       P  + F  +I F  R  L+ RA+ +
Sbjct: 316 NVITHNIILRSMCSTGRWMDAEKFLAEMIRKG-CSPSVVTFNILINFLCRKGLIGRAIDV 374

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            ++M           +N LL+      K++R  E   IM  +   PD  +YN L+     
Sbjct: 375 LEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCK 434

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +++ A ++ +++  +   P L+T+ T+I GL    + D+A+KL ++ M+   +KPD  
Sbjct: 435 DGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDE-MKGKGLKPDII 493

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +++L+ GL   G++  A+    ++    ++ +A  Y+S++  L KA +       L  M
Sbjct: 494 TYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYM 553

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
             RGCKP   +Y  LI G   E   + A  +L+E+  +G
Sbjct: 554 VARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRG 592



 Score = 44.3 bits (103), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%)

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L + G   E    L++M  RG  P+ +   +LI G CK      A  +++ + D G   +
Sbjct: 120 LVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPD 179

Query: 328 PISYNVILGGLCKDGK 343
            I+YNV++ G CK G+
Sbjct: 180 VITYNVLISGYCKTGE 195


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 143/304 (47%), Gaps = 37/304 (12%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-IVPKEIIFCNVIGFYGRARLL 99
           K  R N++ Y  +I  L +++ F E +++L ++K  TR + P    +  +I    +A  +
Sbjct: 278 KGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMK--TRGVTPDAFTYSALIHGLCKADKI 335

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILI 159
           E A QM   M+                                      +PD   Y+ +I
Sbjct: 336 EEAEQMLRRMAGSGC----------------------------------TPDVVVYSSII 361

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           H    S +L +A K   EM K+R  P +VT+ T+I GLC   ++ EA  + E +    +V
Sbjct: 362 HAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDV 421

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   ++++I GLC    L  A  + + M +     D   Y+++I  L K GR  E   
Sbjct: 422 LPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEY 481

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +L+ MK  GC PN VTY  LISG CK    + A  +++EM + GC  N ++YN ++ GLC
Sbjct: 482 LLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLC 541

Query: 340 KDGK 343
             G+
Sbjct: 542 VSGR 545



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 144/329 (43%), Gaps = 14/329 (4%)

Query: 16  KDPKLALQLFK-NPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 74
           KD KLAL  F+  P   P          F +    ++ ++  L R K   E   +    +
Sbjct: 54  KDAKLALAFFRWAPASIPG---------FSHTAFSWNSLLQVLVRCKKHREAGDLFRS-E 103

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
                 P    +  VI  +  A  L  AL++ +EM S            ++      G L
Sbjct: 104 LLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDL 163

Query: 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           D   +  + M     P+  +Y  LI     +++LE+A K+ +EM +R   P LVT+  L+
Sbjct: 164 DGAMDHLRSMG--CDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLV 221

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
             LC    V  A  + + ++      P+   F SL+ G C  G +  A  +   MV   +
Sbjct: 222 DALCKLSMVGAAQDVVKKMIE-GGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGM 280

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
             +   YS+LI  L K+ +  E   +L+EMK RG  P++ TY+ALI G CK +  E A  
Sbjct: 281 RPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQ 340

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +L  M   GC  + + Y+ I+   CK GK
Sbjct: 341 MLRRMAGSGCTPDVVVYSSIIHAFCKSGK 369



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 139/299 (46%), Gaps = 6/299 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y+++I+    A       ++L ++K      P       +I     A  L+ A+  
Sbjct: 111 DVCSYNIVISGFCNAGDLHAALELLEEMK-SAGFAPDAFTHTPIITAMANAGDLDGAM-- 167

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVV 164
            D + S      V  +  L+       KL+  MK L ++ E+   P+  +YN+L+     
Sbjct: 168 -DHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCK 226

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +  A  V  +M++    P ++TF +L+ G C    VD+A KL   IM    ++P+  
Sbjct: 227 LSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLL-GIMVAKGMRPNVV 285

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +++LI GLC   +   A  V EEM    +  DA  YS+LI  L KA +  E   +L+ M
Sbjct: 286 TYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRM 345

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              GC P+ V Y+++I  FCK      A   L EM  +    + ++YN ++ GLCK GK
Sbjct: 346 AGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGK 404



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 136/274 (49%), Gaps = 6/274 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L +A   +E +Q+L ++   +   P  +++ ++I  + ++  L  A +   EM
Sbjct: 322 YSALIHGLCKADKIEEAEQMLRRMA-GSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEM 380

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY--VSPDACSYNILIHGCVVSRR 167
                   V  +NT+++     GK+   + + + M++   V PD  +Y+ +I+G   S  
Sbjct: 381 RKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDM 440

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           L +A K+ D M K    P +VT+ T+I GLC   R++EA  L + + R     P+   + 
Sbjct: 441 LVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRA-GCAPNVVTYT 499

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE- 286
           +LI GLC   ++  A  V EEM       +   Y+++++ L  +GR  E   +++ MK+ 
Sbjct: 500 TLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDG 559

Query: 287 -RGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
              C P++ TY  +++     +  + A  +L++M
Sbjct: 560 RAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 593


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 163/305 (53%), Gaps = 9/305 (2%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQL--KHDTRIVPKEIIFCNVI-GFYGRARLLE 100
           R  ++ Y+ ++  L   +  +E +++LH +    D+   P  + +  VI GF+   ++ +
Sbjct: 152 RLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQV-D 210

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
           +A  +F EM    V   V  +NT+++      ++DR +++FQ M EK V P+  +YN +I
Sbjct: 211 KAYSLFLEMG---VSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTII 267

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G   ++ ++ A  VF +MV + ++P+ VT+ T+I GLC    VD A  + + ++    V
Sbjct: 268 DGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMID-RGV 326

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           KPD   + ++I GLC    +  A GV ++M+   ++ D   Y+ +I  L KA   +    
Sbjct: 327 KPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEG 386

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + ++M ++G KPN+ TYN LI G+     +E     + EM     + +  +Y ++L  LC
Sbjct: 387 VFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLC 446

Query: 340 KDGKC 344
           K+GKC
Sbjct: 447 KNGKC 451



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 134/257 (52%), Gaps = 14/257 (5%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM----EK 146
           G     R+ E    +  +M     ++ V  +NTLL       + +  +EL  +M    + 
Sbjct: 128 GLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDS 187

Query: 147 YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA 206
             SPD  SYNI+I+G     +++ A+ +F EM    + P +VT+ T+I GLC    VD A
Sbjct: 188 SCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRA 244

Query: 207 LKLKEDI---MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
               ED+   M    VKP+   + ++I GLC   E+ +A GV ++MV   ++     Y++
Sbjct: 245 ----EDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNT 300

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +I  L KA   +    + ++M +RG KP+ VTYN +I G CK +  + A  +  +M DKG
Sbjct: 301 IIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKG 360

Query: 324 CKANPISYNVILGGLCK 340
            K + ++Y +I+ GLCK
Sbjct: 361 VKPDNLTYTIIIDGLCK 377



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 151/332 (45%), Gaps = 38/332 (11%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           L Y +II  L +A+  D  + +  Q+  D  + P    +  +I  Y      E  +Q   
Sbjct: 366 LTYTIIIDGLCKAQSVDRAEGVFQQMI-DKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIK 424

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG----- 161
           EMS+ +++  V  +  LL+     GK +  + LF  M  K + P    Y I++HG     
Sbjct: 425 EMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKG 484

Query: 162 ----------------------------CVVSRR--LEDAWKVFDEMVKRRLQPTLVTFG 191
                                       C  ++R  +++   +F +M ++ L P +VT+G
Sbjct: 485 ALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYG 544

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           TLI  LC   RVD+A+ L+ + M    V P+  VF SL+ GLC V +      +  EM+ 
Sbjct: 545 TLIDALCKLGRVDDAV-LQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLN 603

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
             I  D   +++++  L K GR  E   ++  M   G KP+ ++YN LI G C     + 
Sbjct: 604 QGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDE 663

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           A  +LD M   G K N +SYN +L G CK G+
Sbjct: 664 AVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGR 695



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 145/298 (48%), Gaps = 6/298 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+++I         D+   +  ++     + P  + +  +I    +A+ ++RA  +
Sbjct: 192 DVVSYNIVINGFFNEGQVDKAYSLFLEMG----VSPDVVTYNTIIDGLCKAQEVDRAEDV 247

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F +M    V+     +NT+++      ++D  + +FQ M +K V P   +YN +I G   
Sbjct: 248 FQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCK 307

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           ++ ++ A  VF +M+ R ++P  VT+ T+I GLC    +D+A  + + ++    VKPD  
Sbjct: 308 AQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMID-KGVKPDNL 366

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  +I GLC    +  A GV ++M+   ++ + G Y+ LI      G+  E    +KEM
Sbjct: 367 TYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEM 426

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
                +P+  TY  L+   CK      A ++ D M  KG K +   Y ++L G  K G
Sbjct: 427 SAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKG 484



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 152/313 (48%), Gaps = 10/313 (3%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           +  AH L+P   ++  Y L++  L +    +E + +   +     I P   I+  ++  Y
Sbjct: 425 EMSAHDLEP---DVFTYGLLLDYLCKNGKCNEARSLFDSMIRKG-IKPSVTIYGIMLHGY 480

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDA 152
           G+   L     + + M +  +    + FNT++        +D +  +F ++ ++ +SP+ 
Sbjct: 481 GKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNV 540

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +Y  LI       R++DA   F++M+   + P  V F +L+YGLC    VD+  K++E 
Sbjct: 541 VTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLC---TVDKWEKVEEL 597

Query: 213 IMRVYN--VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
            + + N  ++PD   F +++  LC  G +  A  + + MV   ++ D   Y++LI     
Sbjct: 598 FLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCF 657

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
           A R +E   +L  M   G KPN V+YN L+ G+CK    + A+ +  EM  KG      +
Sbjct: 658 ASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVET 717

Query: 331 YNVILGGLCKDGK 343
           YN IL GL + G+
Sbjct: 718 YNTILNGLFRSGR 730



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 144/293 (49%), Gaps = 3/293 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y +++   G+     EM  +L+ +  +  I P   IF  VI  Y +  +++  + +F +M
Sbjct: 473 YGIMLHGYGKKGALSEMHDLLNLMVANG-ISPNHRIFNTVICAYAKRAMIDEVMHIFIKM 531

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
               +   V  + TL++     G++D     F Q++ + V+P+   +N L++G     + 
Sbjct: 532 KQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKW 591

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E   ++F EM+ + ++P +V F T++  LC E RV EA +L  D M    +KPD   + +
Sbjct: 592 EKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLI-DSMVCMGLKPDVISYNT 650

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G C    +  A+ + + MV   ++ +   Y++L+    KAGR +    + +EM  +G
Sbjct: 651 LIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKG 710

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             P   TYN +++G  +   F  A  +   M       +  +Y++IL G CK+
Sbjct: 711 VTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKN 763



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 143/296 (48%), Gaps = 3/296 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ II  L +A+  D  + +  Q+  +  + P  + +  +I    +A+ ++ A  +
Sbjct: 224 DVVTYNTIIDGLCKAQEVDRAEDVFQQMV-EKGVKPNNVTYNTIIDGLCKAQEVDMAEGV 282

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F +M    V+ +   +NT+++       +DR + +FQ M ++ V PD  +YN +I G   
Sbjct: 283 FQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCK 342

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           ++ ++ A  VF +M+ + ++P  +T+  +I GLC    VD A  + + ++    VKP+  
Sbjct: 343 AQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMID-KGVKPNNG 401

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LI G  + G+    +   +EM    +E D   Y  L+  L K G+ NE  ++   M
Sbjct: 402 TYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSM 461

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             +G KP+   Y  ++ G+ K+        +L+ M   G   N   +N ++    K
Sbjct: 462 IRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAK 517



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 138/299 (46%), Gaps = 58/299 (19%)

Query: 94  GRARL----LERALQMFDEMSSFNVQMTVKFFNTLLN----------PKLTCGKLDRMKE 139
           GRAR     L  AL++FDE+       +V+  N LL+           KL   + +RM  
Sbjct: 15  GRARSGNLGLHDALKLFDELLLHARPASVRALNQLLSVVSRAKCSSSSKLAVSRFNRM-- 72

Query: 140 LFQIMEKYVSPDACSYNILIHG-CVVSRR----------LEDAWKVFDEMVKRRLQP--- 185
             +     V+PD C+Y+I+I   C + R           L+  W+V D +V + L+    
Sbjct: 73  -LRDCSNKVAPDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCD 131

Query: 186 ----------------------TLVTFGTLIYGLCLELRVDEALKLKEDIM--RVYNVKP 221
                                  +V++ TL+ GLC   R +EA +L   ++  +  +  P
Sbjct: 132 TKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSP 191

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   +  +I G    G++  A  +  EM    +  D   Y+++I  L KA   +    + 
Sbjct: 192 DVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVF 248

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           ++M E+G KPN+VTYN +I G CK ++ + A  +  +M DKG K + ++YN I+ GLCK
Sbjct: 249 QQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCK 307



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 144/316 (45%), Gaps = 45/316 (14%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL--LERAL 103
           N++ Y  +I  L +    D+     +Q+ ++  + P  ++F +++  YG   +   E+  
Sbjct: 539 NVVTYGTLIDALCKLGRVDDAVLQFNQMINEG-VTPNNVVFNSLV--YGLCTVDKWEKVE 595

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGC 162
           ++F EM +  ++  + FFNT+L      G++   + L   M    + PD  SYN LI G 
Sbjct: 596 ELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGH 655

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             + R+++A K+ D MV   L+P +V++ TL++G C   R+D A  L  +++R   V P 
Sbjct: 656 CFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLR-KGVTPG 714

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDK----------------------------- 253
            + + +++ GL   G  S A  +   M++ +                             
Sbjct: 715 VETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQ 774

Query: 254 ------IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE- 306
                 +++D   ++ +I  LFK GRK +   +   +   G  P+ VTY  +     +E 
Sbjct: 775 SLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEG 834

Query: 307 --EDFEAAFTILDEMG 320
             E+ +  F+++++ G
Sbjct: 835 SLEELDCLFSVMEKSG 850



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 121/275 (44%), Gaps = 18/275 (6%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP   +++ Y+ +I     A   DE  ++L  +     + P  + +  ++  Y +A  +
Sbjct: 641 LKP---DVISYNTLIDGHCFASRMDEAVKLLDGMV-SAGLKPNIVSYNTLLHGYCKAGRI 696

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNIL 158
           + A  +F EM    V   V+ +NT+LN     G+    +EL+  M K       C+Y+I+
Sbjct: 697 DNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSII 756

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           + G   +   ++A+K+F  +    LQ  ++TF  +I GL    R       KED M ++ 
Sbjct: 757 LDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGR-------KEDAMDLFA 809

Query: 219 VKPDGQVFASLI------KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
             P   +  S++      + L   G L     +   M +     ++ + ++LI  L   G
Sbjct: 810 AIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRG 869

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
                 A L ++ E+     + T + LIS F +EE
Sbjct: 870 EIPRAGAYLSKLDEKNFSLEASTTSMLISLFSREE 904


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 136/278 (48%), Gaps = 40/278 (14%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL 158
           L+ A+++F  +   NV      +N LL      G+++  ++LF  M     PD  +Y IL
Sbjct: 247 LDEAIELFQGLPDKNVCS----YNILLKVLCGAGRVEDARQLFDEMAS--PPDVVTYGIL 300

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR--- 215
           IHG      LE+A K+ D+MV R ++P    + +++  LC + RV +AL + ED++    
Sbjct: 301 IHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKV 360

Query: 216 -----VYN--------------------------VKPDGQVFASLIKGLCAVGELSLALG 244
                VY                           +  DG  + +LI GLC  GEL  A  
Sbjct: 361 ILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEK 420

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           V +EM+  ++++D   Y+ L+    K G+  E   +   M +RG  PN VTY AL  G C
Sbjct: 421 VLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLC 480

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           K+ D +AA  +L EM +KG + N  +YN ++ GLCK G
Sbjct: 481 KQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAG 518



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 132/266 (49%), Gaps = 2/266 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           + P   ++ +V+        +  AL + ++M    V +    + T+L+     G L   +
Sbjct: 325 VEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSAR 384

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
             F  M+ K ++ D  +Y  LI+G   +  L++A KV  EM+ RRL    VT+  L+ G 
Sbjct: 385 RWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGY 444

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C   ++ EA ++  + M    V P+   + +L  GLC  G++  A  +  EM    +E++
Sbjct: 445 CKRGKMAEAFQV-HNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELN 503

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           A  Y+SLI+ L KAG  ++    + +M   G KP+  TY  LI   CK  + + A  +L 
Sbjct: 504 ACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQ 563

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
           EM D G K   ++YNV++ G C  G+
Sbjct: 564 EMLDNGIKPTIVTYNVLMNGFCMSGR 589



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 116/212 (54%), Gaps = 11/212 (5%)

Query: 134 LDRMKELFQIMEKYVSPD--ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           LD   ELFQ +     PD   CSYNIL+     + R+EDA ++FDEM      P +VT+G
Sbjct: 247 LDEAIELFQGL-----PDKNVCSYNILLKVLCGAGRVEDARQLFDEMAS---PPDVVTYG 298

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
            LI+G C    ++ A+KL +D M    V+P+  V+ S++  LC  G +S AL V E+MV 
Sbjct: 299 ILIHGYCALGELENAVKLLDD-MVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVH 357

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
            K+ +D  +Y++++S     G          EM+ +G   + VTY  LI+G C+  + + 
Sbjct: 358 HKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKE 417

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           A  +L EM  +    + ++Y V++ G CK GK
Sbjct: 418 AEKVLQEMLARRLDVDEVTYTVLVDGYCKRGK 449



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 143/283 (50%), Gaps = 6/283 (2%)

Query: 59  RAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMT 117
           + ++ D +  +   + H  +++  E ++  V+ GF  +  L+  A + FDEM    +   
Sbjct: 342 KGRVSDALTVVEDMVHH--KVILDEAVYTTVLSGFCNKGDLVS-ARRWFDEMQRKGLATD 398

Query: 118 VKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFD 176
              + TL+N     G+L   +++ Q ++ + +  D  +Y +L+ G     ++ +A++V +
Sbjct: 399 GVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHN 458

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
            MV+R + P +VT+  L  GLC +  V  A +L  + M    ++ +   + SLI GLC  
Sbjct: 459 TMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHE-MSNKGLELNACTYNSLINGLCKA 517

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           G L  A+    +M    ++ D   Y++LI AL K+G  +    +L+EM + G KP  VTY
Sbjct: 518 GYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTY 577

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           N L++GFC     E    +L+ M +K    N  +YN ++   C
Sbjct: 578 NVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYC 620



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 136/284 (47%), Gaps = 16/284 (5%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           + FDEMQ+          +    + +  +I    RA  L+ A ++  EM +  + +    
Sbjct: 385 RWFDEMQR--------KGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVT 436

Query: 121 FNTLLNPKLTCGKLDRMKELFQI----MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFD 176
           +  L++     GK   M E FQ+    +++ V+P+  +Y  L  G      ++ A ++  
Sbjct: 437 YTVLVDGYCKRGK---MAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLH 493

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
           EM  + L+    T+ +LI GLC    +D+A++   D M    +KPD   + +LI  LC  
Sbjct: 494 EMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMAD-MDAAGLKPDVYTYTTLIDALCKS 552

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           GEL  A  + +EM+ + I+     Y+ L++    +GR      +L+ M E+   PN+ TY
Sbjct: 553 GELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTY 612

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           N+L+  +C   + ++   I   M  +  + N  +YN+++ G CK
Sbjct: 613 NSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCK 656



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 130/295 (44%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L RA    E +++L ++    R+   E+ +  ++  Y +   +  A Q+ + M
Sbjct: 402 YTTLINGLCRAGELKEAEKVLQEML-ARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTM 460

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRL 168
               V   V  +  L +     G +    EL   M  K +  +AC+YN LI+G   +  L
Sbjct: 461 VQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYL 520

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A +   +M    L+P + T+ TLI  LC    +D A  L ++++    +KP    +  
Sbjct: 521 DQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLD-NGIKPTIVTYNV 579

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ G C  G +     + E M+   I  +A  Y+SL+              I K M  R 
Sbjct: 580 LMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRN 639

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +PN  TYN LI G CK    + A    +EM +KG +    SY+ ++  L K  K
Sbjct: 640 VEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKK 694



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 126/275 (45%), Gaps = 4/275 (1%)

Query: 59  RAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV 118
           R KM +  Q  +H       + P  + +  +     +   ++ A ++  EMS+  +++  
Sbjct: 447 RGKMAEAFQ--VHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNA 504

Query: 119 KFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
             +N+L+N     G LD+ M+ +  +    + PD  +Y  LI     S  L+ A  +  E
Sbjct: 505 CTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQE 564

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M+   ++PT+VT+  L+ G C+  RV+   KL E ++   N+ P+   + SL+K  C   
Sbjct: 565 MLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLE-KNIHPNATTYNSLMKQYCIGN 623

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
            +     + + M    +E +   Y+ LI    KA    E      EM E+G +  + +Y+
Sbjct: 624 NMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYS 683

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           ALI    K++ F  A  +  +M  +G  A P  YN
Sbjct: 684 ALIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYN 718



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 130/275 (47%), Gaps = 3/275 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +   L +        ++LH++  +  +      + ++I    +A  L++A++ 
Sbjct: 468 NVVTYTALSDGLCKQGDVQAANELLHEMS-NKGLELNACTYNSLINGLCKAGYLDQAMRT 526

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
             +M +  ++  V  + TL++     G+LDR  +L Q +++  + P   +YN+L++G  +
Sbjct: 527 MADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCM 586

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S R+E   K+ + M+++ + P   T+ +L+   C+   +    ++ +  M   NV+P+  
Sbjct: 587 SGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKG-MCSRNVEPNEN 645

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LIKG C    +  A     EM+     + A  YS+LI  L K  +  E   +  +M
Sbjct: 646 TYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDM 705

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           ++ G       YN  I     E++ EA   + DE+
Sbjct: 706 RKEGFTAEPDVYNFYIDFNFNEDNLEATLALCDEL 740


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 140/269 (52%), Gaps = 6/269 (2%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  I F  +I    R + LE A  +  +M++  V+  V  +NTL++     G+L   ++L
Sbjct: 150 PTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQL 209

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
            + M+    +PD  +Y+  ++G   S ++ DA +V ++M      P +VT+ T++ GLC 
Sbjct: 210 LERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCK 269

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             ++D AL++ E +        +   +++++ GLC +G    A  V E M R     D  
Sbjct: 270 SGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVV 329

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YSSL++ L KAG+  E    ++EM   GCKPN+VTY +L+ G C       A  +++EM
Sbjct: 330 TYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEM 389

Query: 320 -----GDKGCKANPISYNVILGGLCKDGK 343
                G   C  +  +YN ++GGLCK G+
Sbjct: 390 SSGGGGGHHCPPSVSTYNALIGGLCKAGR 418



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 157/300 (52%), Gaps = 4/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +++   +A   +E +++L ++     + P  +++  V+    ++  L  AL++
Sbjct: 81  DMVTYSTLLSGYCKAGKVEESRELLKEVISRG-LRPDALMYTKVVASLCKSARLGEALEL 139

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            +EM       T+  FNTL++       L+    L Q M    V  D  +YN L+ G   
Sbjct: 140 LEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCK 199

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + RL++A ++ + M      P +V + + +YGLC   +V +A ++ E  MR  +  P+  
Sbjct: 200 AGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQ-MRDSHHDPNVV 258

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVR-DKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
            + +++ GLC  G++  AL + E+M   D   ++   YS+++  L K GR  E  ++++ 
Sbjct: 259 TYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEA 318

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M   GC+P+ VTY++L++G CK    E A   + EM  +GCK N ++Y  ++ GLC  G+
Sbjct: 319 MARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGR 378



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 155/327 (47%), Gaps = 19/327 (5%)

Query: 6   IRLACLPRLQKDPKLALQLFKNPNPNPNDT--EAHPLKPFRYNLLHYDLIITKLGRAKMF 63
           IR  C P L     L     +  N    D+  +       + +++ Y+ ++  L +A   
Sbjct: 144 IRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRL 203

Query: 64  DEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
            E +Q+L ++K  +   P  + + + V G     ++L+ A Q+ ++M   +    V  +N
Sbjct: 204 QEAEQLLERMKA-SGCAPDVVAYSSFVYGLCKSGKVLD-AHQVLEQMRDSHHDPNVVTYN 261

Query: 123 TLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSR-----RLEDAWKVFDE 177
           T+L+     GK+D      ++ME+  S D C  N++ +  VV       R ++A  V + 
Sbjct: 262 TILDGLCKSGKID---TALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEA 318

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M +   +P +VT+ +L+ GLC   +++EA++   + M +   KP+   + SL+ GLC+ G
Sbjct: 319 MARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVRE-MAMEGCKPNAVTYCSLVHGLCSCG 377

Query: 238 ELSLALGVKEEMVRDKIEM-----DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
            L+ A  + EEM                Y++LI  L KAGR ++     + M+ +GC P+
Sbjct: 378 RLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPD 437

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEM 319
            V+Y+ ++ G  +      A  IL E+
Sbjct: 438 GVSYSTIVEGLARSGRALQAEMILSEV 464



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 114/195 (58%), Gaps = 1/195 (0%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P++ ++N L++G     R  D  ++ + M  R +QP +V++  L+ GLC   R  EA +L
Sbjct: 8   PNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEEL 67

Query: 210 KED-IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
             D I R     PD   +++L+ G C  G++  +  + +E++   +  DA +Y+ ++++L
Sbjct: 68  VRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASL 127

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K+ R  E   +L+EM   GC P  +T+N LISG C+E++ E A ++L +M   G KA+ 
Sbjct: 128 CKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADV 187

Query: 329 ISYNVILGGLCKDGK 343
           ++YN ++ GLCK G+
Sbjct: 188 VTYNTLMDGLCKAGR 202



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 140/272 (51%), Gaps = 16/272 (5%)

Query: 81  PKEIIFCNVI-GFY--GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           P  + F  ++ GF   GR    ER   + + M++ ++Q  V  +N LL       KL+R 
Sbjct: 8   PNSVTFNALVNGFSKQGRPGDCER---LLETMAARDIQPNVVSYNGLLEGLC---KLERW 61

Query: 138 KELFQIMEKYVS------PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
            E  +++   +S      PD  +Y+ L+ G   + ++E++ ++  E++ R L+P  + + 
Sbjct: 62  HEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYT 121

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
            ++  LC   R+ EAL+L E+++R     P    F +LI G C    L +A  + ++M  
Sbjct: 122 KVVASLCKSARLGEALELLEEMIRA-GCCPTLITFNTLISGCCREKNLEMADSLLQKMAA 180

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
             ++ D   Y++L+  L KAGR  E   +L+ MK  GC P+ V Y++ + G CK      
Sbjct: 181 SGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLD 240

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           A  +L++M D     N ++YN IL GLCK GK
Sbjct: 241 AHQVLEQMRDSHHDPNVVTYNTILDGLCKSGK 272



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y   +  L ++    +  Q+L Q++ D+   P  + +  ++    ++  ++ AL+M
Sbjct: 221 DVVAYSSFVYGLCKSGKVLDAHQVLEQMR-DSHHDPNVVTYNTILDGLCKSGKIDTALEM 279

Query: 106 FDEM-SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV 163
            ++M SS    + V  ++T+++     G+    + + + M +    PD  +Y+ L++G  
Sbjct: 280 MEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLC 339

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK--- 220
            + ++E+A +   EM     +P  VT+ +L++GLC   R+ EA ++ E++          
Sbjct: 340 KAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHC 399

Query: 221 -PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P    + +LI GLC  G +  AL   + M     + D   YS+++  L ++GR  +   
Sbjct: 400 PPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEM 459

Query: 280 ILKEMK 285
           IL E++
Sbjct: 460 ILSEVR 465



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%)

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           M   GC PNSVT+NAL++GF K+        +L+ M  +  + N +SYN +L GLCK
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCK 57


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 152/287 (52%), Gaps = 9/287 (3%)

Query: 58  GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT 117
           G+ K    + +IL     ++  VP  I +  +IG Y ++  +++AL++ + MS   V   
Sbjct: 155 GKTKKATRIMEILE----NSGAVPDVITYNVLIGGYCKSGEIDKALEVLERMS---VAPD 207

Query: 118 VKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFD 176
           V  +NT+L      GKL + M+ L + +++   PD  +Y ILI        +  A K+ D
Sbjct: 208 VVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLD 267

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
           EM K+  +P +VT+  LI G+C E R+DEA+K   + M  Y  KP+      +++ +C+ 
Sbjct: 268 EMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNN-MPSYGCKPNVITHNIILRSMCST 326

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           G    A  +  +M+R         ++ LI+ L +         +L++M + GC PNS++Y
Sbjct: 327 GRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSY 386

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           N L+ GFC+E+  + A   L+ M  +GC  + ++YN +L  LCKDGK
Sbjct: 387 NPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGK 433



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 148/300 (49%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQIL-HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +++ Y+ I+  L  +    E  ++L  QL+ +    P  I +  +I        + +A++
Sbjct: 207 DVVTYNTILRSLCDSGKLKEAMEVLDRQLQREC--YPDVITYTILIEATCNDSGVGQAMK 264

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV 163
           + DEM     +  V  +N L+N     G+LD   +    M  Y   P+  ++NI++    
Sbjct: 265 LLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMC 324

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            + R  DA ++  +M+++   P++VTF  LI  LC +  +  A+ + E  M  +   P+ 
Sbjct: 325 STGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEK-MPKHGCVPNS 383

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             +  L+ G C   ++  A+   E MV      D   Y++L++AL K G+ +    IL +
Sbjct: 384 LSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQ 443

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  +GC P  +TYN +I G  K    E A  +L+EM  KG K + I+Y+ +L GL ++GK
Sbjct: 444 LSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGK 503



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 146/306 (47%), Gaps = 39/306 (12%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           N+  ++  KP   N++ +++I+  +     + + +++L  +       P  + F  +I F
Sbjct: 302 NNMPSYGCKP---NVITHNIILRSMCSTGRWMDAERLLSDMLRKG-CSPSVVTFNILINF 357

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDA 152
             R RLL RA+ + ++M                 PK  C                  P++
Sbjct: 358 LCRKRLLGRAIDVLEKM-----------------PKHGC-----------------VPNS 383

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            SYN L+HG    ++++ A +  + MV R   P +VT+ TL+  LC + +VD A+++   
Sbjct: 384 LSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQ 443

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            +      P    + ++I GL  VG+   A+ + EEM R  ++ D   YS+L+  L + G
Sbjct: 444 -LSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREG 502

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           + +E   I  +M+    KP++VTYNA++ G CK +    A   L  M +KGCK    +Y 
Sbjct: 503 KVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYT 562

Query: 333 VILGGL 338
           +++ G+
Sbjct: 563 ILIEGI 568



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 103/194 (53%), Gaps = 4/194 (2%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PD  +   LI G   S + + A ++ + +      P ++T+  LI G C    +D+AL++
Sbjct: 139 PDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEV 198

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            E +    +V PD   + ++++ LC  G+L  A+ V +  ++ +   D   Y+ LI A  
Sbjct: 199 LERM----SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATC 254

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
                 +   +L EM+++GCKP+ VTYN LI+G CKE   + A   L+ M   GCK N I
Sbjct: 255 NDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVI 314

Query: 330 SYNVILGGLCKDGK 343
           ++N+IL  +C  G+
Sbjct: 315 THNIILRSMCSTGR 328



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           NI +   V +  LE+  K  + M+ +   P ++   +LI G C   +  +A ++ E I+ 
Sbjct: 110 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIME-ILE 168

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
                PD   +  LI G C  GE+  AL V E M    +  D   Y++++ +L  +G+  
Sbjct: 169 NSGAVPDVITYNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLK 225

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E   +L    +R C P+ +TY  LI   C +     A  +LDEM  KGCK + ++YNV++
Sbjct: 226 EAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLI 285

Query: 336 GGLCKDGK 343
            G+CK+G+
Sbjct: 286 NGICKEGR 293


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 163/300 (54%), Gaps = 7/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNV-IGFYGRARLLERALQ 104
           N    ++++    ++  FD+   ++ ++  + R V  +++  NV I    RA  ++ A+ 
Sbjct: 156 NAYTLNIMVHSYCKSLEFDKADTVISEM--EKRCVFPDVVTHNVLIDARFRAGDVDAAIA 213

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHGCV 163
           + D M++  ++  +  FN++L       + D+ KE+F+ M++  V+PD  S+NILI G  
Sbjct: 214 LVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFC 273

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDIMRVYNVKPD 222
               +E+A K + EM +R + P +V+F  LI       ++D A   L+E  M+   + PD
Sbjct: 274 RVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLRE--MKGLGLVPD 331

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
           G ++  +I G C  G +S AL V++EMV      D   Y++L++ L K  R  +   +L 
Sbjct: 332 GVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLN 391

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           EMKERG  P+  T+  LI G+C++ +FE A  + D +  +  + + ++YN ++ G+C+ G
Sbjct: 392 EMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKG 451



 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 149/285 (52%), Gaps = 4/285 (1%)

Query: 59  RAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV 118
           R KM D     L ++K    +VP  +I+  VIG + RA  +  AL++ DEM        V
Sbjct: 310 RGKM-DHAAAYLREMK-GLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDV 367

Query: 119 KFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
             +NTLLN      +L   +EL   M E+ V+PD C++  LIHG       E A ++FD 
Sbjct: 368 VTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDT 427

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           ++ +RL+P +V + +LI G+C +  + +A +L +D M    + P+   ++ LI   C  G
Sbjct: 428 LLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDD-MHAREIFPNHVTYSILIDSHCEKG 486

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           ++  A G  +EMV      +   Y+S+I    ++G   +    L++M +    P+ +T+N
Sbjct: 487 QVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFN 546

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            LI G+ KEE+   AF + + M  +  + + ++YN+I+ G  + G
Sbjct: 547 TLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQG 591



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 151/304 (49%), Gaps = 6/304 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP    ++ ++ ++  L + + FD+ +++   +     + P    F  +IG + R   +
Sbjct: 223 LKP---GIVTFNSVLKGLCKHRRFDKAKEVFRAMDQ-CSVAPDVRSFNILIGGFCRVGEV 278

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
           E A++ + EM    V   V  F+ L+    T GK+D      + M+   + PD   Y ++
Sbjct: 279 EEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMV 338

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   +  + +A +V DEMV     P +VT+ TL+ GLC + R+ +A +L  + M+   
Sbjct: 339 IGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNE-MKERG 397

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V PD   F +LI G C  G    AL + + ++  ++  D   Y+SLI  + + G   +  
Sbjct: 398 VTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKAN 457

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +  +M  R   PN VTY+ LI   C++   E AF  LDEM  KG   N ++YN I+ G 
Sbjct: 458 ELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGY 517

Query: 339 CKDG 342
           C+ G
Sbjct: 518 CRSG 521



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 141/279 (50%), Gaps = 3/279 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ ++  L +     + +++L+++K +  + P    F  +I  Y R    E+ALQ+
Sbjct: 366 DVVTYNTLLNGLCKQHRLLDAEELLNEMK-ERGVTPDLCTFTTLIHGYCRDGNFEKALQL 424

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           FD +    ++  V  +N+L++     G L +  EL+  M  + + P+  +Y+ILI     
Sbjct: 425 FDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCE 484

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             ++E+A+   DEMV +   P ++T+ ++I G C    V +  +  + +M+  N+ PD  
Sbjct: 485 KGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQ-DNILPDLI 543

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G      +  A  V   M ++ ++ DA  Y+ +I+   + G   E   + K+M
Sbjct: 544 TFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKM 603

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
              G +P+  TY +LI+G     + + AF + DEM  +G
Sbjct: 604 GASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRG 642



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 57/115 (49%)

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           ++   C   E   A  V  EM +  +  D   ++ LI A F+AG  +   A++  M  +G
Sbjct: 163 MVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANKG 222

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            KP  VT+N+++ G CK   F+ A  +   M       +  S+N+++GG C+ G+
Sbjct: 223 LKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGE 277


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/323 (30%), Positives = 168/323 (52%), Gaps = 13/323 (4%)

Query: 21  ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
           AL LFK       + E   ++P   N++ Y  +I+ L     + +  Q+L  +  + +I 
Sbjct: 203 ALNLFK-------EMETKGIRP---NVVTYSSLISCLCSYGRWSDASQLLSDMI-EKKIN 251

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  +I  + +      A ++ D+M   ++   +  +N+L+N      +LD+ K++
Sbjct: 252 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 311

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ M  K   PD  +YN LI G   S+R+ED  ++F EM  R L    VT+ TLI GL  
Sbjct: 312 FEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 371

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +   D A K+ +  M    V PD   ++ L+ GLC  G+L  AL V + M + +I++D  
Sbjct: 372 DGDCDNAQKVFKQ-MVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIY 430

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           IY+++I  + KAG+ ++   +   +  +G KPN VTYN +ISG C +   + A+ +L +M
Sbjct: 431 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 490

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
            + G   +  +YN ++    +DG
Sbjct: 491 KEDGPLPDSGTYNTLIRAHLRDG 513



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 148/299 (49%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ Y +++  L +    D    +L++++   +I    +IF  +I    + R ++ AL +
Sbjct: 148 NLVTYGVVVNGLCKRGDIDLAFNLLNKMEA-AKIEADVVIFNTIIDSLCKYRHVDDALNL 206

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F EM +  ++  V  +++L++   + G+     +L   M EK ++P+  ++N LI   V 
Sbjct: 207 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 266

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +  +A K+ D+M+KR + P + T+ +LI G C+  R+D+A ++ E  M   +  PD  
Sbjct: 267 EGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFE-FMVSKDCFPDLD 325

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LIKG C    +     +  EM    +  D   Y++LI  LF  G  +    + K+M
Sbjct: 326 TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM 385

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  P+ +TY+ L+ G C     E A  + D M     K +   Y  ++ G+CK GK
Sbjct: 386 VSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 444



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 135/261 (51%), Gaps = 5/261 (1%)

Query: 87  CNVIGF-YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQ 142
           C  +G  +G+   L+ A+ +F  M       ++  FN LL+      K D    +  L +
Sbjct: 10  CLFVGISWGKDLKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLALLGK 69

Query: 143 IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR 202
           +M+    P   + + L++G    +R+ DA  + D+MV+   +P  +TF TLI+GL L  +
Sbjct: 70  MMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNK 129

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
             EA+ L  D M     +P+   +  ++ GLC  G++ LA  +  +M   KIE D  I++
Sbjct: 130 ASEAVALV-DRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFN 188

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           ++I +L K    ++   + KEM+ +G +PN VTY++LIS  C    +  A  +L +M +K
Sbjct: 189 TIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEK 248

Query: 323 GCKANPISYNVILGGLCKDGK 343
               N +++N ++    K+GK
Sbjct: 249 KINPNLVTFNALIDAFVKEGK 269



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 128/274 (46%), Gaps = 35/274 (12%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIH 160
           +L +  +M     + ++   ++LLN      ++ D +  + Q++E    PD  ++  LIH
Sbjct: 63  SLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 122

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD---------EALKLKE 211
           G  +  +  +A  + D MV+R  QP LVT+G ++ GLC    +D         EA K++ 
Sbjct: 123 GLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEA 182

Query: 212 DI-------------------------MRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
           D+                         M    ++P+   ++SLI  LC+ G  S A  + 
Sbjct: 183 DVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 242

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
            +M+  KI  +   +++LI A  K G+  E   +  +M +R   P+  TYN+LI+GFC  
Sbjct: 243 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMH 302

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +  + A  + + M  K C  +  +YN ++ G CK
Sbjct: 303 DRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCK 336



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 155/359 (43%), Gaps = 32/359 (8%)

Query: 16  KDPKL--ALQLFKN---PNPNPNDTEAHPLKPFRYNLLHYDLIIT--------KLGRAKM 62
           KD KL  A+ LF       P P+  E + L      +  +DL+I+        KLG    
Sbjct: 19  KDLKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPS 78

Query: 63  FDEMQQILHQLKHDTRIV---------------PKEIIFCNVI-GFYGRARLLERALQMF 106
              +  +L+   H  RI                P  I F  +I G +   +  E A+ + 
Sbjct: 79  IVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASE-AVALV 137

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVS 165
           D M     Q  +  +  ++N     G +D    L   ME   +  D   +N +I      
Sbjct: 138 DRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKY 197

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
           R ++DA  +F EM  + ++P +VT+ +LI  LC   R  +A +L  D++    + P+   
Sbjct: 198 RHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE-KKINPNLVT 256

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F +LI      G+   A  + ++M++  I+ D   Y+SLI+      R ++   + + M 
Sbjct: 257 FNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMV 316

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
            + C P+  TYN LI GFCK +  E    +  EM  +G   + ++Y  ++ GL  DG C
Sbjct: 317 SKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDC 375



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 107/211 (50%), Gaps = 4/211 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    +  +I  + +++ +E   ++F EMS   +      + TL+      G  D  +++
Sbjct: 322 PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 381

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F Q++   V PD  +Y+IL+ G   + +LE A +VFD M K  ++  +  + T+I G+C 
Sbjct: 382 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 441

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             +VD+   L    + +  VKP+   + ++I GLC+   L  A  + ++M  D    D+G
Sbjct: 442 AGKVDDGWDLFCS-LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSG 500

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCK 290
            Y++LI A  + G K     +++EM  R C+
Sbjct: 501 TYNTLIRAHLRDGDKAASAELIREM--RSCR 529


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 152/299 (50%), Gaps = 4/299 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           FR++   +  +I +L     F   + +L ++K +   V +++ F  +   YGR      A
Sbjct: 46  FRHDHNTFGAMIHRLVSVNQFRPAEGMLERMKQEDCEVTEDV-FLTICRGYGRVHRPLDA 104

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG 161
           +++F +M  F V+ T K + T+ +  +    + R    ++ M EK + P   S NILI  
Sbjct: 105 IRVFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKA 164

Query: 162 -CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
            C     +E A+++F EM  R  QP   T+GTLI GLC   ++ +A +L  D M    + 
Sbjct: 165 LCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELL-DEMEEKGLS 223

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P    + SLI GLC    L  A+ + EEM+ + IE +   YSSL+  L K+G  ++   +
Sbjct: 224 PSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMEL 283

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           L+ M  R   PN VTY+ LI+G CKE     A  ILD M  +G K +   Y  I+ GLC
Sbjct: 284 LEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLC 342



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 152/285 (53%), Gaps = 15/285 (5%)

Query: 68  QILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127
           ++ H+++ D ++ P +  +  V         ++RA+  + EM    +  TV   N L+  
Sbjct: 106 RVFHKME-DFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILI-- 162

Query: 128 KLTCGKLDRMKELFQIMEKY----VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
           K  C   + ++  F++  +       PD+ +Y  LI+G     ++  A ++ DEM ++ L
Sbjct: 163 KALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGL 222

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P++V++ +LI+GLC    +DEA++L E+++ +  ++P+   ++SL+ GLC  G  S A+
Sbjct: 223 SPSVVSYTSLIHGLCQSNNLDEAIELLEEMI-INGIEPNVFTYSSLMDGLCKSGHSSQAM 281

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            + E MVR ++  +   YS+LI+ L K G+  E   IL  M+ +G KP++  Y  +ISG 
Sbjct: 282 ELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGL 341

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISY-------NVILGGLCKD 341
           C   +++ A   +DEM   G   N  S+       N+++ GLC +
Sbjct: 342 CAACNYQEAANFIDEMALGGISPNRASWTFHVKMHNMVVQGLCNN 386



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 132/273 (48%), Gaps = 11/273 (4%)

Query: 80  VPKEIIFCNVI--GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           +P  ++  N++          +E A ++F EM +   Q     + TL+N     GK+ + 
Sbjct: 151 IPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQA 210

Query: 138 KELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           KEL   ME K +SP   SY  LIHG   S  L++A ++ +EM+   ++P + T+ +L+ G
Sbjct: 211 KELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDG 270

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC      +A++L E ++R   + P+   +++LI GLC  G+   A+ + + M    ++ 
Sbjct: 271 LCKSGHSSQAMELLEVMVR-RRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKP 329

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY-------NALISGFCKEEDF 309
           DAG+Y  +IS L  A    E    + EM   G  PN  ++       N ++ G C   D 
Sbjct: 330 DAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTFHVKMHNMVVQGLCNNVDP 389

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             AF +   M  +G      +++ ++   CK G
Sbjct: 390 TRAFQLYLSMRTRGISVEIGTFDCLVKCFCKRG 422



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/287 (19%), Positives = 122/287 (42%), Gaps = 44/287 (15%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L +     + +++L +++ +  + P  + + ++I    ++  L+ A+++ +EM
Sbjct: 194 YGTLINGLCKLGKISQAKELLDEME-EKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEM 252

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
               ++  V  +++L++     G   +  EL ++M  + + P+  +Y+ LI+G     + 
Sbjct: 253 IINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKH 312

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--------------- 213
            +A ++ D M  + L+P    +G +I GLC      EA    +++               
Sbjct: 313 REAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTFH 372

Query: 214 --------------------------MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
                                     MR   +  +   F  L+K  C  G+L+ A  + E
Sbjct: 373 VKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKRGDLNKAARILE 432

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL-KEMKERGCKPNS 293
           EM+ D    D G+++ L+  L+   +  E   +L  E+K++  +  S
Sbjct: 433 EMILDGCIPDEGMWNVLMCGLWDRKKVRETTELLVAELKQKFVEAES 479



 Score = 45.1 bits (105), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 26/122 (21%), Positives = 55/122 (45%)

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           + D   F ++I  L +V +   A G+ E M ++  E+   ++ ++     +  R  +   
Sbjct: 47  RHDHNTFGAMIHRLVSVNQFRPAEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIR 106

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +  +M++   KP   +Y  +     +E   + A     EM +KG     +S N+++  LC
Sbjct: 107 VFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALC 166

Query: 340 KD 341
           K+
Sbjct: 167 KN 168


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 134/243 (55%), Gaps = 4/243 (1%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161
           A  +F ++    + +    FN +L      GK  R  EL + M +   P+A +YN +I G
Sbjct: 100 AFALFADIYRLRLPLCTTTFNIMLRHLCATGKPVRALELLRQMPR---PNAVTYNTVIAG 156

Query: 162 CVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                R++ A +V  EM +R  + P   T+ TLI G C   R+++A+K+ ++++    V 
Sbjct: 157 FCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVA 216

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P   ++ +LI G C VG+L +AL  +E+MV+  I M    Y+ L+ ALF   R ++  A+
Sbjct: 217 PSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAV 276

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L+EM++ G  P+  TYN LI+G+CKE + + A  + +EM  KG +A  ++Y  ++    +
Sbjct: 277 LEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSR 336

Query: 341 DGK 343
            G+
Sbjct: 337 KGQ 339



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 151/290 (52%), Gaps = 13/290 (4%)

Query: 56  KLGR----AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111
           K+GR     K+FDEM            + P  +++  +IG Y     L+ ALQ  ++M  
Sbjct: 195 KIGRMEDAVKVFDEMLT-------KGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQ 247

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLED 170
             + MTV  +N L++      +      + + M+K   SPD  +YNILI+G       + 
Sbjct: 248 RGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKK 307

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           A +VF+EM ++ ++ T VT+ +LIY    + +V E  +L  ++     ++PD  ++ +LI
Sbjct: 308 ALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLF-NVAVKKGIRPDVVMYNALI 366

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
              C  G++  A  +  EM + +I  D   Y++L+      GR +E   ++ EM +RG +
Sbjct: 367 NSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQ 426

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           P+ V+YN LISG+  + D + A  + DEM DKG     ++YN ++ GLCK
Sbjct: 427 PDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCK 476



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 144/301 (47%), Gaps = 3/301 (0%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R N + Y+ +I             +++ +++    I P +  +  +I  + +   +E A+
Sbjct: 144 RPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAV 203

Query: 104 QMFDEM-SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG 161
           ++FDEM +   V  +   +N L+      GKLD   +  + M ++ ++    +YN+L+H 
Sbjct: 204 KVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHA 263

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
             +  R  DA+ V +EM K    P + T+  LI G C E    +AL++ E+ M    V+ 
Sbjct: 264 LFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEE-MSQKGVRA 322

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
               + SLI      G++     +    V+  I  D  +Y++LI++    G       I+
Sbjct: 323 TAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIM 382

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM+++   P+ +TYN L+ GFC     + A T++DEM  +G + + +SYN ++ G    
Sbjct: 383 AEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMK 442

Query: 342 G 342
           G
Sbjct: 443 G 443



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 133/267 (49%), Gaps = 6/267 (2%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKF-FNTLLNPKLTCGKLDRMK 138
           P  + +  VI GF  R R+ + AL++  EM         K+ + TL++     G+++   
Sbjct: 145 PNAVTYNTVIAGFCARGRV-QAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAV 203

Query: 139 ELFQIM--EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           ++F  M  +  V+P A  YN LI G     +L+ A +  ++MV+R +  T+ T+  L++ 
Sbjct: 204 KVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHA 263

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           L ++ R  +A  + E+ M+     PD   +  LI G C  G    AL V EEM +  +  
Sbjct: 264 LFMDARASDAYAVLEE-MQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRA 322

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
            A  Y+SLI    + G+  E   +     ++G +P+ V YNALI+  C   D E A+ I+
Sbjct: 323 TAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIM 382

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
            EM  K    + ++YN ++ G C  G+
Sbjct: 383 AEMEKKRIPPDDMTYNTLMRGFCLLGR 409



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 137/265 (51%), Gaps = 8/265 (3%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           YNLL + L +    RA    +   +L +++ +    P    +  +I  Y +    ++AL+
Sbjct: 257 YNLLMHALFMD--ARAS---DAYAVLEEMQKNG-FSPDVFTYNILINGYCKEGNEKKALE 310

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQI-MEKYVSPDACSYNILIHGCV 163
           +F+EMS   V+ T   + +L+      G++     LF + ++K + PD   YN LI+   
Sbjct: 311 VFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHC 370

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
               +E A+++  EM K+R+ P  +T+ TL+ G CL  R+DEA  L +++ +   ++PD 
Sbjct: 371 TGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTK-RGIQPDL 429

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +LI G    G++  AL V++EM+          Y++LI  L K  + ++   ++KE
Sbjct: 430 VSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKE 489

Query: 284 MKERGCKPNSVTYNALISGFCKEED 308
           M  +G  P+  TY +LI G   E++
Sbjct: 490 MVAKGITPDDSTYISLIEGLTTEDE 514


>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
 gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
          Length = 481

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 132/243 (54%), Gaps = 4/243 (1%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161
           A  +F ++    + +    FN +L      GK  R  EL + M +   P+A +YN +I G
Sbjct: 100 AFALFADIYRLRLPLCTTTFNIMLRHLCATGKPVRALELLRQMPR---PNAVTYNTVIAG 156

Query: 162 CVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                R++ A +V  EM +R  + P   T+ TLI G C   R+++A K+ ++++    V 
Sbjct: 157 FCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVA 216

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P   ++ +LI G C  G+L +AL  +E+MV+  + M    Y+ L+ ALF  GR ++  A+
Sbjct: 217 PSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAV 276

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L+EM+  G  P+  TYN LI+G+CKE + + A  + +EM  KG +A  ++Y  ++    +
Sbjct: 277 LEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSR 336

Query: 341 DGK 343
            G+
Sbjct: 337 KGQ 339



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 136/267 (50%), Gaps = 6/267 (2%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKF-FNTLLNPKLTCGKLDRMK 138
           P  + +  VI GF  R R+ + AL++  EM         K+ + TL++     G+++   
Sbjct: 145 PNAVTYNTVIAGFCARGRV-QAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAA 203

Query: 139 ELFQIM--EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           ++F  M  +  V+P A  YN LI G     +L+ A +  ++MV+R +  T+ T+  L++ 
Sbjct: 204 KVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHA 263

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           L ++ R  +A  + E++ R   + PD   +  LI G C  G    AL V EEM R  +  
Sbjct: 264 LFMDGRASDAYAVLEEMQR-NGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRA 322

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
            A  Y+SLI A  + G+  E   + K   ++G +P+ V YNALI+  C   D E AF I+
Sbjct: 323 TAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIM 382

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
            EM  K    + ++YN ++ G C  G+
Sbjct: 383 AEMEKKRIPPDDVTYNTLIRGFCLLGR 409



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 144/302 (47%), Gaps = 11/302 (3%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R N + Y+ +I             +++ +++    I P +  +  +I  + +   +E A 
Sbjct: 144 RPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAA 203

Query: 104 QMFDEM-SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG 161
           ++FDEM +   V  +   +N L+      GKLD   +  + M ++ V+    +YN+L+H 
Sbjct: 204 KVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHA 263

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
             +  R  DA+ V +EM +  L P + T+  LI G C E    +AL++ E++ R   V+ 
Sbjct: 264 LFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSR-KGVRA 322

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
               + SLI      G++     + +  V+  I  D  +Y++LI++    G       I+
Sbjct: 323 TAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIM 382

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM+++   P+ VTYN LI GFC     + A  ++DEM  +G + +         GLCK+
Sbjct: 383 AEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQPDL--------GLCKN 434

Query: 342 GK 343
           G+
Sbjct: 435 GQ 436



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 16/225 (7%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           YNLL + L +   GRA    +   +L +++ +  + P    +  +I  Y +    ++AL+
Sbjct: 257 YNLLVHALFMD--GRAS---DAYAVLEEMQRNG-LSPDVFTYNILINGYCKEGNEKKALE 310

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQI-MEKYVSPDACSYNILIHGCV 163
           +F+EMS   V+ T   + +L+      G++     LF++ ++K + PD   YN LI+   
Sbjct: 311 VFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHC 370

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
               +E A+++  EM K+R+ P  VT+ TLI G CL  R+DEA  L +++ +   ++PD 
Sbjct: 371 AGGDMERAFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTK-RGIQPD- 428

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
                   GLC  G+   A  + +EMV   I  D   Y SLI  L
Sbjct: 429 -------LGLCKNGQGDDAENLMKEMVGKGITPDDSTYISLIEGL 466


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 157/299 (52%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ +  +I    R    D+       +K  + +VP  +I+  +I  Y R  ++  AL++
Sbjct: 324 DLISFSSLIGVSSRNGHLDQALMYFRDMK-TSGLVPDNVIYTILINGYCRNGMMSEALEI 382

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            D+M      + V  +NT+LN       L     LF +++E+ V PD C++  LIHG   
Sbjct: 383 RDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCK 442

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +  A  +F  M ++ ++P +VT+  LI G C    +++A +L  +++    + P+  
Sbjct: 443 EGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMIS-RKIFPNHI 501

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +A L+ G C +G +S A  + +EM+R  I+      +++I    ++G  ++    L +M
Sbjct: 502 SYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKM 561

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  P+S+TYN LI+GF K E  + AF ++++M  KG + + ++YNVIL G C+ G+
Sbjct: 562 ISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGR 620



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 134/244 (54%), Gaps = 2/244 (0%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDAC 153
           + +LL  A  +FDEM    V      F TL++     G + +   LF IM +K + PD  
Sbjct: 407 KKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIV 466

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YNILI G   +  +E A ++++EM+ R++ P  +++  L+ G C    V EA +L +++
Sbjct: 467 TYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEM 526

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           +R   +KP      ++IKG C  G+LS A     +M+ + +  D+  Y++LI+   K   
Sbjct: 527 IR-KGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEY 585

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            ++   ++ +M+ +G +P+ VTYN +++GFC++   + A  IL +M ++G   +  +Y  
Sbjct: 586 MDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTT 645

Query: 334 ILGG 337
           ++ G
Sbjct: 646 LING 649



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 146/295 (49%), Gaps = 5/295 (1%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQMF 106
           L +DL+I    +A+  +E       L+    +V   I  CN ++G   +   ++ A +++
Sbjct: 116 LVFDLLIRSYVQARKLNEGTDTFKILRRKGFLV--SINACNSLLGGLVKMGWVDLAWEVY 173

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVS 165
           +E++   +++ V   N ++N      K+D +K     ME K +  D  +YN LI+     
Sbjct: 174 NEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCRE 233

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             L +A++V + M  + L+PTL T+  +I GLC + R   A  +  +++ +  + PD   
Sbjct: 234 GLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSI-GLSPDTTT 292

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + +L+   C       A  +  +M+   +  D   +SSLI    + G  ++     ++MK
Sbjct: 293 YNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMK 352

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             G  P++V Y  LI+G+C+      A  I D+M ++GC  + ++YN IL GLCK
Sbjct: 353 TSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCK 407



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 99/198 (50%), Gaps = 18/198 (9%)

Query: 163 VVSRRLEDAWKVFDEMVKR------RLQPTLVTFGT------LIYGLCLELRVDEALKLK 210
           V S+RL DA  +   M++R       +  +L++  +      L++ L +   V +A KL 
Sbjct: 74  VRSKRLSDAQTLILRMIRRSGVSRVEIVESLISMSSTCGVDNLVFDLLIRSYV-QARKLN 132

Query: 211 ED-----IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           E      I+R            SL+ GL  +G + LA  V  E+ R  IE++    + ++
Sbjct: 133 EGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMV 192

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
           +AL K  + ++    L +M+++G   + VTYN LI+ +C+E     AF +++ M  KG K
Sbjct: 193 NALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLK 252

Query: 326 ANPISYNVILGGLCKDGK 343
               +YN ++ GLCK G+
Sbjct: 253 PTLFTYNAVINGLCKKGR 270



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 128/282 (45%), Gaps = 36/282 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ I+  L + K+  +   +  ++  +  +VP    F  +I  + +   + +AL +
Sbjct: 394 DVVAYNTILNGLCKKKLLADANALFDEMV-ERGVVPDFCTFTTLIHGHCKEGNMGKALSL 452

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           F  M+  N++  +  +N L++      ++++  EL+ +++ + + P+  SY IL++G   
Sbjct: 453 FGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCN 512

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE---LRVDEALK--LKEDI------ 213
              + +A++++DEM+++ ++PTLVT  T+I G C      + DE L   + E +      
Sbjct: 513 LGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSIT 572

Query: 214 -----------------------MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
                                  M    ++PD   +  ++ G C  G +  A  +  +M+
Sbjct: 573 YNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMI 632

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
              I+ D   Y++LI+         E      EM +RG  P+
Sbjct: 633 ERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPD 674


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 97/323 (30%), Positives = 168/323 (52%), Gaps = 13/323 (4%)

Query: 21  ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
           AL LFK       + E   ++P   N++ Y  +I+ L     + +  Q+L  +  + +I 
Sbjct: 204 ALNLFK-------EMETKGIRP---NVVTYSSLISCLCSYGRWSDASQLLSDMI-EKKIN 252

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  +I  + +      A ++ D+M   ++   +  +N+L+N      +LD+ K++
Sbjct: 253 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 312

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ M  K   PD  +YN LI G   S+R+ED  ++F EM  R L    VT+ TLI GL  
Sbjct: 313 FEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 372

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +   D A K+ +  M    V PD   ++ L+ GLC  G+L  AL V + M + +I++D  
Sbjct: 373 DGDCDNAQKVFKQ-MVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIY 431

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           IY+++I  + KAG+ ++   +   +  +G KPN VTYN +ISG C +   + A+ +L +M
Sbjct: 432 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 491

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
            + G   +  +YN ++    +DG
Sbjct: 492 KEDGPLPDSGTYNTLIRAHLRDG 514



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 148/299 (49%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ Y +++  L +    D    +L++++   +I    +IF  +I    + R ++ AL +
Sbjct: 149 NLVTYGVVVNGLCKRGDIDLAFNLLNKMEA-AKIEADVVIFNTIIDSLCKYRHVDDALNL 207

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F EM +  ++  V  +++L++   + G+     +L   M EK ++P+  ++N LI   V 
Sbjct: 208 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 267

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +  +A K+ D+M+KR + P + T+ +LI G C+  R+D+A ++ E  M   +  PD  
Sbjct: 268 EGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFE-FMVSKDCFPDLD 326

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LIKG C    +     +  EM    +  D   Y++LI  LF  G  +    + K+M
Sbjct: 327 TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM 386

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  P+ +TY+ L+ G C     E A  + D M     K +   Y  ++ G+CK GK
Sbjct: 387 VSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 445



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 137/268 (51%), Gaps = 2/268 (0%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD- 135
           +R +P    F  ++    + +  +  + + ++M    +   +  +N L+N      ++  
Sbjct: 4   SRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISL 63

Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
            +  L ++M+    P   + + L++G    +R+ DA  + D+MV+   +P  +TF TLI+
Sbjct: 64  ALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 123

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           GL L  +  EA+ L  D M     +P+   +  ++ GLC  G++ LA  +  +M   KIE
Sbjct: 124 GLFLHNKASEAVALV-DRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIE 182

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D  I++++I +L K    ++   + KEM+ +G +PN VTY++LIS  C    +  A  +
Sbjct: 183 ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQL 242

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
           L +M +K    N +++N ++    K+GK
Sbjct: 243 LSDMIEKKINPNLVTFNALIDAFVKEGK 270



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 133/287 (46%), Gaps = 35/287 (12%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKY 147
           +I  + R   +  AL +  +M     + ++   ++LLN      ++ D +  + Q++E  
Sbjct: 51  LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 110

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD--- 204
             PD  ++  LIHG  +  +  +A  + D MV+R  QP LVT+G ++ GLC    +D   
Sbjct: 111 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAF 170

Query: 205 ------EALKLKEDI-------------------------MRVYNVKPDGQVFASLIKGL 233
                 EA K++ D+                         M    ++P+   ++SLI  L
Sbjct: 171 NLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 230

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           C+ G  S A  +  +M+  KI  +   +++LI A  K G+  E   +  +M +R   P+ 
Sbjct: 231 CSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDI 290

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            TYN+LI+GFC  +  + A  + + M  K C  +  +YN ++ G CK
Sbjct: 291 FTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCK 337



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 124/266 (46%), Gaps = 4/266 (1%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  I F  +I G +   +  E A+ + D M     Q  +  +  ++N     G +D    
Sbjct: 113 PDTITFTTLIHGLFLHNKASE-AVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFN 171

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L   ME   +  D   +N +I      R ++DA  +F EM  + ++P +VT+ +LI  LC
Sbjct: 172 LLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLC 231

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              R  +A +L  D++    + P+   F +LI      G+   A  + ++M++  I+ D 
Sbjct: 232 SYGRWSDASQLLSDMIE-KKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDI 290

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y+SLI+      R ++   + + M  + C P+  TYN LI GFCK +  E    +  E
Sbjct: 291 FTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFRE 350

Query: 319 MGDKGCKANPISYNVILGGLCKDGKC 344
           M  +G   + ++Y  ++ GL  DG C
Sbjct: 351 MSHRGLVGDTVTYTTLIQGLFHDGDC 376



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 107/211 (50%), Gaps = 4/211 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    +  +I  + +++ +E   ++F EMS   +      + TL+      G  D  +++
Sbjct: 323 PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 382

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F Q++   V PD  +Y+IL+ G   + +LE A +VFD M K  ++  +  + T+I G+C 
Sbjct: 383 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 442

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             +VD+   L    + +  VKP+   + ++I GLC+   L  A  + ++M  D    D+G
Sbjct: 443 AGKVDDGWDLFCS-LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSG 501

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCK 290
            Y++LI A  + G K     +++EM  R C+
Sbjct: 502 TYNTLIRAHLRDGDKAASAELIREM--RSCR 530


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 124/212 (58%), Gaps = 3/212 (1%)

Query: 133 KLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           K+D+   LF Q+++K + PD  +Y  LI G    RR+++A+ +F+E   +   PT+VT+ 
Sbjct: 10  KVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYN 69

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           T+I GLC   R++ AL L +D+   +  +P    +++LI GLC   E+     + EEM  
Sbjct: 70  TMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAG 129

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
                +A  Y++L++AL   GR  E  ++L++M   GC P  +T+  +I G CKE + EA
Sbjct: 130 RGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEA 189

Query: 312 AFTILDEMG--DKGCKANPISYNVILGGLCKD 341
           AF ++DEM   + G   + I++N +L GLCK+
Sbjct: 190 AFRVVDEMFMIESGLSPDVITFNSVLDGLCKE 221



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 145/295 (49%), Gaps = 6/295 (2%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           +I  L +++  D+   +  Q+  D  I P  + +  +I   G+ R ++ A  +F+E  + 
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMV-DKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAK 59

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PDACSYNILIHGCVVSRRLED 170
               TV  +NT+++    CG+++    L+  M  +    P   +Y+ LI G      ++ 
Sbjct: 60  GCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDK 119

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
             K+ +EM  R   P  VT+ TL+  L  + R  EA  L E  M      P+   F  +I
Sbjct: 120 GCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQ-MAANGCPPELITFGLII 178

Query: 231 KGLCAVGELSLALGVKEE--MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           KGLC  GE+  A  V +E  M+   +  D   ++S++  L K  R  +   + K   ERG
Sbjct: 179 KGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERG 238

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C+PN VTY+ LI G  K    + A  +L +M + GC+AN ++Y+ ++ GL K G+
Sbjct: 239 CRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGR 293



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 138/262 (52%), Gaps = 3/262 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKE 139
           P  + +  +I    +   ++ ALQ+  +M     +     ++T+++  L  G++ D +  
Sbjct: 241 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVV 300

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L Q+ +    PDA +YN LI G    +RL +A  +  EM++    P++VT+ TL +GLC 
Sbjct: 301 LRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCR 360

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R DEA+++  D M      P+   ++S++ GLC  G ++ ALG  E+M RD++     
Sbjct: 361 SGRFDEAVEIL-DYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHV 419

Query: 260 I-YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
           I YS+LI  L KAG+ +E    L+ M   G  P+ VT++ LI+G C     +    +   
Sbjct: 420 IAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRG 479

Query: 319 MGDKGCKANPISYNVILGGLCK 340
           M ++GC  + ++Y  ++  LC+
Sbjct: 480 MAERGCVPDMVTYATLVDRLCR 501



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 155/306 (50%), Gaps = 9/306 (2%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLER 101
           FR  ++ Y  +I  L R    D+  ++L ++       P  + +  ++    G+ R  E 
Sbjct: 97  FRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRG-CAPNAVTYNTLVNALLGQGRSKE- 154

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR----MKELFQIMEKYVSPDACSYNI 157
           A  + ++M++      +  F  ++      G+++     + E+F I E  +SPD  ++N 
Sbjct: 155 AFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMI-ESGLSPDVITFNS 213

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           ++ G    +R+ DA  VF   ++R  +P +VT+ TLI GL    ++DEAL+L   ++ + 
Sbjct: 214 VLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVEL- 272

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             + +   +++++ GL  VG +  A+ V  +M       DA  Y++LI   FK  R  E 
Sbjct: 273 GCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREA 332

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +L+EM E G  P+ VTY  L  G C+   F+ A  ILD M  +GC  N I+Y+ I+ G
Sbjct: 333 VGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDG 392

Query: 338 LCKDGK 343
           LCK G+
Sbjct: 393 LCKAGR 398



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 144/304 (47%), Gaps = 12/304 (3%)

Query: 47  LLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           L+ + LII  L +    +   +++ ++   ++ + P  I F +V+ G     R+L+ A  
Sbjct: 171 LITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILD-AHN 229

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIH 160
           +F        +  V  ++TL++      K+ +M E  Q++ K V      +  +Y+ ++ 
Sbjct: 230 VFKRALERGCRPNVVTYSTLIDG---LSKMAKMDEALQLLAKMVELGCRANTVTYSTVVD 286

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G +   R+EDA  V  +M      P  VT+ TLI G     R+ EA+ L  +++      
Sbjct: 287 GLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEA-GFH 345

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P    + +L  GLC  G    A+ + + M       +A  YSS++  L KAGR  E    
Sbjct: 346 PSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGY 405

Query: 281 LKEM-KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
            ++M ++    P+ + Y+ALI G CK    + A+  L+ M   G   + +++++++ GLC
Sbjct: 406 FEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLC 465

Query: 340 KDGK 343
             G+
Sbjct: 466 DAGR 469



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 113/278 (40%), Gaps = 41/278 (14%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERA 102
           R N + Y  ++  L +    ++   +L Q++ D   +P  + +  +I GF+ R RL E A
Sbjct: 275 RANTVTYSTVVDGLLKVGRMEDAVVVLRQMR-DAGCLPDAVTYNTLIDGFFKRQRLRE-A 332

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM------------------ 144
           + +  EM       +V  + TL +     G+ D   E+   M                  
Sbjct: 333 VGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDG 392

Query: 145 -------------------EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
                              ++ V+P   +Y+ LI G   + ++++A++  + M++    P
Sbjct: 393 LCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIP 452

Query: 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
            +VTF  LI GLC   R+D  L+L    M      PD   +A+L+  LC    +  A  +
Sbjct: 453 DVVTFSILINGLCDAGRIDTGLELFRG-MAERGCVPDMVTYATLVDRLCRASRVDEAFDL 511

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
            ++M  D +  D     ++I  L +  R  +   I  E
Sbjct: 512 FQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDAKRIQDE 549


>gi|414874000|tpg|DAA52557.1| TPA: hypothetical protein ZEAMMB73_743775 [Zea mays]
          Length = 630

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 145/276 (52%), Gaps = 3/276 (1%)

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           ILH +     +VP +  +  V+     A  +E A+ +  EM    V ++ + FN +L   
Sbjct: 183 ILHDVIPAWNLVPDKFTYSTVVSALADAGCVEEAVALVHEMVVDGV-VSAEAFNPVLKAM 241

Query: 129 LTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
           L  G ++   +LF+ M+ K  +  A +YN+L+HG ++      A  +   M    + P L
Sbjct: 242 LRAGDVNGAVKLFRFMQLKGCTLTAVTYNVLLHGLLLCGEARAAMNIMRRMENEGIVPGL 301

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           +T+G ++ GL    RV++A K+ ++ M    + P   VF+++I G C  GE+  AL V E
Sbjct: 302 MTYGAVVDGLVKCGRVEDAWKVAQE-MGGQGLAPSEFVFSAVITGFCKSGEVDRALMVWE 360

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
            MV  +++ +  +YS++I    ++GR  E   + +EM +  C PN VTY++++ G+    
Sbjct: 361 TMVAARVKPNVVLYSAMIDGFARSGRMTEAEKLFEEMVDAKCIPNIVTYSSMVRGYFHIA 420

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +   A +  +EM   GC    ISY++++ GLC  G+
Sbjct: 421 NSSRALSTWEEMIKVGCVPTAISYSILISGLCDVGR 456



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 143/294 (48%), Gaps = 4/294 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +++ L  A   +E   ++H++  D  +V  E  F  V+    RA  +  A+++F  M
Sbjct: 200 YSTVVSALADAGCVEEAVALVHEMVVDG-VVSAEA-FNPVLKAMLRAGDVNGAVKLFRFM 257

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRL 168
                 +T   +N LL+  L CG+      + + ME + + P   +Y  ++ G V   R+
Sbjct: 258 QLKGCTLTAVTYNVLLHGLLLCGEARAAMNIMRRMENEGIVPGLMTYGAVVDGLVKCGRV 317

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           EDAWKV  EM  + L P+   F  +I G C    VD AL + E  M    VKP+  ++++
Sbjct: 318 EDAWKVAQEMGGQGLAPSEFVFSAVITGFCKSGEVDRALMVWET-MVAARVKPNVVLYSA 376

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I G    G ++ A  + EEMV  K   +   YSS++   F     +   +  +EM + G
Sbjct: 377 MIDGFARSGRMTEAEKLFEEMVDAKCIPNIVTYSSMVRGYFHIANSSRALSTWEEMIKVG 436

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           C P +++Y+ LISG C     + A  +   M  +GC  + I+Y  ++ GLC  G
Sbjct: 437 CVPTAISYSILISGLCDVGRLKDAMMVWKNMIGRGCAPDTIAYTSMMKGLCMSG 490



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 146/298 (48%), Gaps = 9/298 (3%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           L    YN+L + L++    RA M      I+ +++++  IVP  + +  V+    +   +
Sbjct: 264 LTAVTYNVLLHGLLLCGEARAAM-----NIMRRMENEG-IVPGLMTYGAVVDGLVKCGRV 317

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           E A ++  EM    +  +   F+ ++      G++DR   +++ M    V P+   Y+ +
Sbjct: 318 EDAWKVAQEMGGQGLAPSEFVFSAVITGFCKSGEVDRALMVWETMVAARVKPNVVLYSAM 377

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   S R+ +A K+F+EMV  +  P +VT+ +++ G         AL   E++++V  
Sbjct: 378 IDGFARSGRMTEAEKLFEEMVDAKCIPNIVTYSSMVRGYFHIANSSRALSTWEEMIKVGC 437

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V P    ++ LI GLC VG L  A+ V + M+      D   Y+S++  L  +G  +   
Sbjct: 438 V-PTAISYSILISGLCDVGRLKDAMMVWKNMIGRGCAPDTIAYTSMMKGLCMSGMVDGGL 496

Query: 279 AILKEMKERG-CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
            +  +M  +G  KP+ ++YN L+    +  D   A  +L++M D+ C  + I+ N+ L
Sbjct: 497 RLFNDMLAKGDAKPDVISYNVLLDALIRTNDLPRAMDLLNQMLDQMCDPDTITCNIFL 554



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 86/168 (51%), Gaps = 8/168 (4%)

Query: 183 LQPTLVTFGTLIYGLCLE-------LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           L PTL++F  L+  +C         L +  AL +  D++  +N+ PD   +++++  L  
Sbjct: 150 LTPTLLSFNLLLKCICSSMVPRNPGLYLAVALGILHDVIPAWNLVPDKFTYSTVVSALAD 209

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G +  A+ +  EMV D + + A  ++ ++ A+ +AG  N    + + M+ +GC   +VT
Sbjct: 210 AGCVEEAVALVHEMVVDGV-VSAEAFNPVLKAMLRAGDVNGAVKLFRFMQLKGCTLTAVT 268

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           YN L+ G     +  AA  I+  M ++G     ++Y  ++ GL K G+
Sbjct: 269 YNVLLHGLLLCGEARAAMNIMRRMENEGIVPGLMTYGAVVDGLVKCGR 316


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 160/304 (52%), Gaps = 6/304 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  NL+ Y ++I  L +++  D+   +  Q+  D  I P  + +  +I   G+ R ++ A
Sbjct: 201 FSPNLISYTIMIDGLCKSRKVDKAITLFKQMV-DKAIYPDVVTYGALIDGLGKQRRVKEA 259

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM--EKYVSPDACSYNILIH 160
             +F+E  +     TV  +NT+++    CG+++    L+  M  E ++ PD  +Y+ LI+
Sbjct: 260 YDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALIN 319

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV- 219
           G  +S R E A+++++EM+     P +VT+ TL+ GLC     D+A+++    M V NV 
Sbjct: 320 GLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRK-MGVGNVC 378

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   +  LI   C V  L  A+ + +EM    +  DA  ++++I  L K  R +E   
Sbjct: 379 DPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHE 438

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + + +  + CKP+SV +N +++G+CK    + A  + D M D GC     +Y  ++ G C
Sbjct: 439 LFESIG-KTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFC 497

Query: 340 KDGK 343
           + G+
Sbjct: 498 RTGR 501



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 141/262 (53%), Gaps = 4/262 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P E+ +  ++  + +A  +++AL +F EM    + + ++  N +L    + GK+    E+
Sbjct: 135 PDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIAV-LRSHNIVLRGLCSGGKISMAWEV 193

Query: 141 FQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
           F+ M    SP+  SY I+I G   SR+++ A  +F +MV + + P +VT+G LI GL  +
Sbjct: 194 FKDMSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQ 253

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD-KIEMDAG 259
            RV EA  L E+  R     P    + ++I GLC  G +  AL + ++MVR+  ++ D  
Sbjct: 254 RRVKEAYDLFEE-ARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMF 312

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YS+LI+ L  + R  +   + +EM + GC P+ VTYN L+ G CK    + A  I  +M
Sbjct: 313 TYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKM 372

Query: 320 G-DKGCKANPISYNVILGGLCK 340
           G    C  N I+Y V++   CK
Sbjct: 373 GVGNVCDPNVITYTVLIDRFCK 394



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 129/244 (52%), Gaps = 3/244 (1%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           A ++F +MS       + +   +++      K+D+   LF Q+++K + PD  +Y  LI 
Sbjct: 190 AWEVFKDMSGIFSPNLISY-TIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALID 248

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G    RR+++A+ +F+E   +   PT+VT+ T+I GLC   R++ AL L +D++R  ++K
Sbjct: 249 GLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLK 308

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   +++LI GL        A  + EEM+      D   Y++L+  L K+G +++   I
Sbjct: 309 PDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEI 368

Query: 281 LKEMKERG-CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
            ++M     C PN +TY  LI  FCK +    A  +  EM  +    + +++  ++  LC
Sbjct: 369 FRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLC 428

Query: 340 KDGK 343
           K+ +
Sbjct: 429 KESR 432



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 114/258 (44%), Gaps = 40/258 (15%)

Query: 122 NTLLNPKLTCGKLDRMKELFQI-MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           N LL+  +   +++     FQ  M+    PD  SYN L++G   +  ++ A  +F EM K
Sbjct: 106 NNLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEM-K 164

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
                 L +   ++ GLC   ++  A ++ +D+  +++  P+   +  +I GLC   ++ 
Sbjct: 165 DSGIAVLRSHNIVLRGLCSGGKISMAWEVFKDMSGIFS--PNLISYTIMIDGLCKSRKVD 222

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A+ + ++MV   I  D   Y +LI  L K  R  E   + +E + +GC P  VTYN +I
Sbjct: 223 KAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMI 282

Query: 301 SGFCKEEDFEAAFTILD------------------------------------EMGDKGC 324
            G CK    E A T+ D                                    EM D GC
Sbjct: 283 DGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGC 342

Query: 325 KANPISYNVILGGLCKDG 342
             + ++YN +L GLCK G
Sbjct: 343 SPDVVTYNTLLDGLCKSG 360



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 113/248 (45%), Gaps = 4/248 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            ++ Y+ +I  L +    +    +   +  +  + P    +  +I     +   E+A ++
Sbjct: 274 TVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYEL 333

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME--KYVSPDACSYNILIHGCV 163
           ++EM        V  +NTLL+     G  D+  E+F+ M       P+  +Y +LI    
Sbjct: 334 YEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFC 393

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              RL DA K+  EM  R L P  VTF T+I  LC E R+DEA +L E I +    KPD 
Sbjct: 394 KVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESIGK--TCKPDS 451

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
            +F +++ G C +  +  A  + + M+          Y++L++   + GR ++   +  E
Sbjct: 452 VLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHE 511

Query: 284 MKERGCKP 291
           M E G  P
Sbjct: 512 MIEMGFPP 519



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 123/253 (48%), Gaps = 39/253 (15%)

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMK------ELFQIMEKY--VSPDACSYNILIHGCVV 164
            ++ ++  +  +L P L    + R+       E+FQ   K    + +  + N L+   V 
Sbjct: 55  GIEKSLGLYGDILVPDLVGKVIHRIPDPNTAWEVFQWAGKQSKFTHNRFTCNNLLSVYVK 114

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED-------IMRVY 217
           +RR+EDA   F   +K   +P  V++ TL+ G      V +AL L  +       ++R +
Sbjct: 115 ARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIAVLRSH 174

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI-------YSSLISALFK 270
           N+         +++GLC+ G++S+A  V ++M        +GI       Y+ +I  L K
Sbjct: 175 NI---------VLRGLCSGGKISMAWEVFKDM--------SGIFSPNLISYTIMIDGLCK 217

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
           + + ++   + K+M ++   P+ VTY ALI G  K+   + A+ + +E   KGC    ++
Sbjct: 218 SRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVT 277

Query: 331 YNVILGGLCKDGK 343
           YN ++ GLCK G+
Sbjct: 278 YNTMIDGLCKCGR 290


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 150/315 (47%), Gaps = 17/315 (5%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           P  P  YN++     I    +  M +E   ++ ++  D   VP  + +  V+    ++  
Sbjct: 390 PPSPVTYNVM-----IDASCKRGMLEEACDLIKKMIEDGH-VPDVVTYNTVMDGLCKSSR 443

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD------RMKELFQIMEKYVS--- 149
           +E AL +F+EM         +  NT++       K+D      ++ E F+++++      
Sbjct: 444 VEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGH 503

Query: 150 -PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
            PD  +Y+ LI G     R++DA  + ++MVKR+ +PT+VT  TLI+GLC   R+ EA +
Sbjct: 504 VPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEARE 563

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           +  D M      PD   + +L+ G C  G+   A  +  +MV   +  +   Y++L+S L
Sbjct: 564 VL-DAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGL 622

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            KA R  E   +  +MK  GC PN  TY ALI GFC     +    +  EM   G   + 
Sbjct: 623 CKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDH 682

Query: 329 ISYNVILGGLCKDGK 343
           + Y  +   LCK G+
Sbjct: 683 VVYGTLAAELCKSGR 697



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 150/300 (50%), Gaps = 10/300 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I  L +A   ++ + +  +L H + + P  + + ++I     A   + A ++F +M
Sbjct: 326 YGILIDGLAKAGKLNDARNLFQKLLH-SGVTPSTVAYTSLIHGLCMANSFDDARELFADM 384

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
           +      +   +N +++     G L+   +L + M E    PD  +YN ++ G   S R+
Sbjct: 385 NRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRV 444

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL---KLKEDIMRVYNVKPDGQV 225
           E+A  +F+EM +    P   +  T+I GLC + ++D+A    KL E    +  +  DG V
Sbjct: 445 EEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHV 504

Query: 226 -----FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
                +++LI GLC++  +  A  + E+MV+ + +      ++LI  L KAGR  E   +
Sbjct: 505 PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV 564

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L  M   G  P+ VTYN L+ G C+    E A  +L +M  +G   N ++Y  ++ GLCK
Sbjct: 565 LDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCK 624



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 148/305 (48%), Gaps = 12/305 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y++++  L +A   D+  ++   +      +    +   ++G     R+ E ALQ+
Sbjct: 144 NSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDE-ALQV 202

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           + E       +T    N LL    + G++D+ +EL + M ++  +PD  SY  ++ G   
Sbjct: 203 YRENRREPCLVT---LNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCK 259

Query: 165 SRRLEDAWKVFDE------MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           + R+E+A ++F +             P+L  +  +I GLC   R+DEA+++ E  M   N
Sbjct: 260 AGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEK-MNERN 318

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V PD   +  LI GL   G+L+ A  + ++++   +      Y+SLI  L  A   ++  
Sbjct: 319 VSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAR 378

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +  +M  RGC P+ VTYN +I   CK    E A  ++ +M + G   + ++YN ++ GL
Sbjct: 379 ELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGL 438

Query: 339 CKDGK 343
           CK  +
Sbjct: 439 CKSSR 443



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 129/284 (45%), Gaps = 5/284 (1%)

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
            DE  ++L ++  D   VP  + +  +I        ++ A  + ++M     + TV   N
Sbjct: 488 LDEAFRLLKRMTDDGH-VPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQN 546

Query: 123 TLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
           TL++     G++   +E+   M     SPD  +YN L+HG   + + E A ++  +MV R
Sbjct: 547 TLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVAR 606

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
            L P +VT+  L+ GLC   R+ EA  +    M+     P+   + +LI G C+ G++  
Sbjct: 607 GLAPNVVTYTALVSGLCKANRLPEACGVFAQ-MKSSGCAPNLFTYTALILGFCSAGQVDG 665

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE--RGCKPNSVTYNAL 299
            L +  EMV   I  D  +Y +L + L K+GR      IL+E +E  R        Y   
Sbjct: 666 GLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFA 725

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + G  +    E A   + +M   G    P     ++ GLCK G+
Sbjct: 726 VDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQ 769



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 140/330 (42%), Gaps = 18/330 (5%)

Query: 7   RLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRY-----------NLLHYDLIIT 55
           RL C P  +    + L L +    +         + FR            +++ Y  +I+
Sbjct: 456 RLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLIS 515

Query: 56  KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ 115
            L      D+ + +L  +    +  P  +    +I    +A  ++ A ++ D M S    
Sbjct: 516 GLCSIARVDDARHLLEDMVK-RQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQS 574

Query: 116 MTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKV 174
             V  +NTL++     G+ +R +EL   M  + ++P+  +Y  L+ G   + RL +A  V
Sbjct: 575 PDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGV 634

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
           F +M      P L T+  LI G C   +VD  LKL  + M    + PD  V+ +L   LC
Sbjct: 635 FAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGE-MVCAGISPDHVVYGTLAAELC 693

Query: 235 AVGELSLALGVKEEMVRDKIEMDAG---IYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
             G  + AL +  E  R+ +  +A    +Y   +  L +AG+       +++M   G  P
Sbjct: 694 KSGRSARALEILREG-RESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLP 752

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGD 321
                 +L++G CK      A  +L+E+ D
Sbjct: 753 APERCASLVAGLCKSGQGGEARAVLEEIMD 782



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 107/255 (41%), Gaps = 35/255 (13%)

Query: 120 FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
            F +++      G+     ++F +ME+  SP    YN+LI      +  E   K+   MV
Sbjct: 12  LFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDVYNVLIDSLSKRQETEAVKKMVQVMV 71

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP------------------ 221
            R   P   TF T++ GLC   ++DEA +L  D MR   + P                  
Sbjct: 72  DRGCFPDSFTFTTILCGLCKAGKMDEA-ELVMDEMRSRMIPPYFATSSFLAHELCLRGSM 130

Query: 222 -------------DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
                        +   +  ++  LC    +  AL +   M   +I + AG   S++  L
Sbjct: 131 ERAFQLLEIMPVANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGL 190

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
             +GR +E   + +E +    +P  VT N L+ GFC     + A  +L  M D+ C  + 
Sbjct: 191 MDSGRIDEALQVYRENRR---EPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDE 247

Query: 329 ISYNVILGGLCKDGK 343
           +SY  +L GLCK G+
Sbjct: 248 VSYCTVLDGLCKAGR 262



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 6/166 (3%)

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M ++ + P  + F ++I G C   R  EA+K+   +   ++  PD  V+  LI  L    
Sbjct: 1   MFQQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPD--VYNVLIDSLSKRQ 58

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           E      + + MV      D+  +++++  L KAG+ +E   ++ EM+ R   P   T +
Sbjct: 59  ETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSS 118

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            L    C     E AF +L+ M      AN  +YN+++  LCK  +
Sbjct: 119 FLAHELCLRGSMERAFQLLEIMP----VANSSAYNIVVVALCKAAR 160


>gi|225462369|ref|XP_002267684.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580,
           mitochondrial-like [Vitis vinifera]
          Length = 393

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 157/312 (50%), Gaps = 7/312 (2%)

Query: 18  PKLALQLF---KNPNP-NPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL 73
           P+  L++F   +NP    P        K F+ N   Y L+I KL +A+MFD ++ ++  L
Sbjct: 52  PREVLKIFDGLRNPESVMPVLDSVSKRKDFKPNEALYTLVINKLAQARMFDAIEDVIKTL 111

Query: 74  KHDTRIVPKEIIFCNVIGFYGR-ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132
           K D +    ++ F NVI  YG  A   +RA++   +M  F+   +VK FN +LN  ++  
Sbjct: 112 KIDKQCRLSDVFFYNVIKVYGNVAGQPDRAVETLFDMPKFHCWPSVKTFNLVLNMLVSAK 171

Query: 133 KLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           + D + +++    E  V  DAC  NIL+ G   S  ++ A ++ DE  K+R +P + TF 
Sbjct: 172 RFDVVHKVYAGAPELGVEIDACCLNILVKGLCRSGNVDAACELLDEYPKQRCRPNVRTFS 231

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           TL++GLC   RV+ AL L E + R   V PD  VF  LI GL   G +   + +   M  
Sbjct: 232 TLMHGLCESGRVEGALGLLERMER-EGVYPDTVVFNILISGLRKRGRVEEGMELLGRMKL 290

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
                +AG Y  ++  +   GR  +    + +M + G  P+ V+Y  +I G CKE     
Sbjct: 291 KGCYPNAGSYQEVLYGVLDTGRFGKAKEFMCQMIDEGVSPSFVSYKMMIYGLCKENLVAD 350

Query: 312 AFTILDEMGDKG 323
              IL +M ++G
Sbjct: 351 VVWILKQMVEQG 362


>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 701

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 163/299 (54%), Gaps = 4/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEII-FCNVIGFYGRARLLERALQ 104
           N++ Y+++I  L +   FDE  +I  ++  + R   K++  + ++I     A  ++ A++
Sbjct: 256 NVVTYNIMINGLCKCGRFDESLEIWERMTKNER--EKDMFTYSSLIHGLCEAGNIDGAVR 313

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           ++ E+   ++ +     N +LN     GK+    EL+ +M K       SYNILI G   
Sbjct: 314 VYKEIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQTVVSYNILIKGLFE 373

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + ++E+A  +++ + K+  +P   T+G LI+GLC   R+++ALK+ ++       K D  
Sbjct: 374 NGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPG-KLDAY 432

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++S++ GLC  G +  A+ +  +M +   ++D  + + LI+   +A +  +     +EM
Sbjct: 433 AYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREM 492

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + +GC P  V+YN LI G CK E F  A++ + EM +K  K + I+ ++++ GLC++ K
Sbjct: 493 ECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKK 551



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 175/367 (47%), Gaps = 51/367 (13%)

Query: 15  QKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGR-AKMFDEMQQILHQL 73
           +K+P  AL LF++ + N    ++H    F +       I+ +L   +++   + +I+  +
Sbjct: 23  EKNPLSALSLFESASRN----KSHSAHVFHH-------ILRRLAADSRLVSHVSRIVDIV 71

Query: 74  KHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS-FNVQMTVKFFNTLLNPKLTCG 132
           K   +   KE +   VI  Y + ++  +AL  F  M   F  +  V+ +NTLLN  +   
Sbjct: 72  KAQ-KCPCKEDVALTVIKAYAKNKMSNKALDTFQNMQDIFGCKPGVRSYNTLLNAFVELN 130

Query: 133 KLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           + DR +   +  E   VSP+  +YNILI      +++E A  + D M  + L+P + ++G
Sbjct: 131 EWDRAESFSRYFESMDVSPNLQTYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYG 190

Query: 192 TLIYGL--------------------------CLELRVDEALK---------LKEDIMRV 216
           TLI G+                          C  + +D   K         + E +++ 
Sbjct: 191 TLINGMVKVGDLLGALKVFDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKD 250

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
            +V P+   +  +I GLC  G    +L + E M +++ E D   YSSLI  L +AG  + 
Sbjct: 251 CSVYPNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDG 310

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              + KE+ E     ++VT+NA+++GFC+    + +F +   MG + C+   +SYN+++ 
Sbjct: 311 AVRVYKEIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQT-VVSYNILIK 369

Query: 337 GLCKDGK 343
           GL ++GK
Sbjct: 370 GLFENGK 376



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 156/292 (53%), Gaps = 3/292 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+++I    +   +D+ ++I  +L  D  + P  + +  +I    +    + +L++++ M
Sbjct: 224 YNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDESLEIWERM 283

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
           +    +  +  +++L++     G +D    ++ +I+E  +  DA ++N +++G   + ++
Sbjct: 284 TKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTHNAMLNGFCRAGKI 343

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           +++++++  M K   Q T+V++  LI GL    +V+EA+ + E + +    +P+   +  
Sbjct: 344 KESFELWMVMGKENCQ-TVVSYNILIKGLFENGKVEEAISIWELLCK-KGCRPESTTYGV 401

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI GLC  G L+ AL + +E      ++DA  YSS++  L K GR +E  +I+ +M +RG
Sbjct: 402 LIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRG 461

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            K +    N LI+GF +    E A     EM  KGC    +SYN ++ GLCK
Sbjct: 462 YKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNTLIKGLCK 513



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 132/247 (53%), Gaps = 4/247 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           +E+A+ + D M S N++  V  + TL+N  +  G L    ++F  M  + V  D   YN+
Sbjct: 167 IEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSVRGVVADVTCYNM 226

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           LI G       +   ++++ +VK   + P +VT+  +I GLC   R DE+L++ E + + 
Sbjct: 227 LIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDESLEIWERMTKN 286

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
              K D   ++SLI GLC  G +  A+ V +E+V   + +DA  ++++++   +AG+  E
Sbjct: 287 EREK-DMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTHNAMLNGFCRAGKIKE 345

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +   M +  C+   V+YN LI G  +    E A +I + +  KGC+    +Y V++ 
Sbjct: 346 SFELWMVMGKENCQ-TVVSYNILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIH 404

Query: 337 GLCKDGK 343
           GLCK+G+
Sbjct: 405 GLCKNGR 411



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 121/244 (49%), Gaps = 6/244 (2%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY---VSPDACSY 155
           L +AL++F E      ++    ++++++     G++D    +   M+K    + P  C  
Sbjct: 412 LNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVC-- 469

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N LI+G V + +LEDA   F EM  +   PT+V++ TLI GLC   R  EA    ++++ 
Sbjct: 470 NPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLE 529

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
               KPD    + L+ GLC   ++ +AL + ++ +    + D  +Y+ L+  L    +  
Sbjct: 530 -KEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDKGFKPDITMYNILMHGLCSVCKLE 588

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +   +   MK   C PN VT N L+ G  K  D+E A  I D +   G   + ISYN+ +
Sbjct: 589 DALQLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEKASEIWDCILKDGLHPDIISYNITI 648

Query: 336 GGLC 339
            GLC
Sbjct: 649 KGLC 652



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 115/238 (48%), Gaps = 2/238 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           ++ A+ + ++M     ++     N L+N  +   KL+     F+ ME K  SP   SYN 
Sbjct: 447 MDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNT 506

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G   + R  +A+    EM+++  +P ++T   L+ GLC E +++ AL L +  +   
Sbjct: 507 LIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALD-K 565

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             KPD  ++  L+ GLC+V +L  AL +   M R     +    ++L+  L+K     + 
Sbjct: 566 GFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEKA 625

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
             I   + + G  P+ ++YN  I G C       A   L++  ++G     +++N+++
Sbjct: 626 SEIWDCILKDGLHPDIISYNITIKGLCSCSRISDAIEFLNDALNRGILPTAVTWNILV 683


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 157/302 (51%), Gaps = 3/302 (0%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
            R +++ Y  +I  L  A   D   ++L+++  ++ I P  +++  ++  Y +    E  
Sbjct: 125 VRPDVVTYGTLIRGLCDAADVDTAVELLNEM-CESGIEPNVVVYSCLLHGYCKTGRWESV 183

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG 161
            ++F+EMS   ++  V  +  L++     GK+ +   +  +M E+ + P+  +YN+LI+ 
Sbjct: 184 GKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINS 243

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR-VYNVK 220
                 + +A  +   M ++ +QP +VT+ TLI GL   L +DEA+ L E++M+    V+
Sbjct: 244 MCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVR 303

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   F S+I GLC +G +  AL V+  M  +    +   ++ LI  L +  +  +   +
Sbjct: 304 PDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMEL 363

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + EM   G +P+S TY+ LI+GFCK    E A + L EM  +G +  P+ Y  +L  +C 
Sbjct: 364 MDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCD 423

Query: 341 DG 342
            G
Sbjct: 424 QG 425



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 112/222 (50%), Gaps = 5/222 (2%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEK----YVSPDACSYNILIHGCVVSRRLEDAWKVFD 176
           +NT+L      G LD    L ++M         P+A SY  L+      RR   A  +  
Sbjct: 59  YNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAVGLLR 118

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
            M    ++P +VT+GTLI GLC    VD A++L  ++     ++P+  V++ L+ G C  
Sbjct: 119 SMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCE-SGIEPNVVVYSCLLHGYCKT 177

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           G       V EEM    IE D  +Y++LI +L + G+  +   ++  M ERG +PN VTY
Sbjct: 178 GRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTY 237

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           N LI+  CKE     A  +   M +KG + + ++YN ++ GL
Sbjct: 238 NVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGL 279



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 100/196 (51%), Gaps = 4/196 (2%)

Query: 151 DACSYNILIHGCVVSRRLEDAW---KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           DA SYN ++        L+ A    +V     +   +P  +++ TL+  LC + R  +A+
Sbjct: 55  DAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAV 114

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            L    M+   V+PD   + +LI+GLC   ++  A+ +  EM    IE +  +YS L+  
Sbjct: 115 GLLRS-MQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHG 173

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
             K GR      + +EM  RG +P+ V Y ALI   C+    + A  ++D M ++G + N
Sbjct: 174 YCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPN 233

Query: 328 PISYNVILGGLCKDGK 343
            ++YNV++  +CK+G 
Sbjct: 234 VVTYNVLINSMCKEGS 249



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 143/300 (47%), Gaps = 4/300 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLL 99
           K  + +++ Y+ +IT L      DE   +L ++ + +TR+ P  + F +VI    +   +
Sbjct: 263 KGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWM 322

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
            +ALQ+   M+    +  +  FN L+   L   K+ +  EL   M    + PD+ +Y+IL
Sbjct: 323 RQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSIL 382

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G    R++E A     EM  + ++P  V +  L+  +C +  + +A  L  ++ R  N
Sbjct: 383 INGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDR--N 440

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
            K D   ++++I G    GE  +A    ++M+ + +  DA  YS  I+   K+G      
Sbjct: 441 CKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAE 500

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +LK+M   G  P+   +++LI G+  + D E    +  EM  K    +P   + I+  L
Sbjct: 501 RVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTREMTAKDVALDPKIISTIVTSL 560



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 146/304 (48%), Gaps = 14/304 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+++I  + +     E   +   +  +  + P  + +  +I        ++ A+ +
Sbjct: 233 NVVTYNVLINSMCKEGSVREALDLRKNMS-EKGVQPDVVTYNTLITGLSSVLEMDEAMAL 291

Query: 106 FDEM--SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC-----SYNIL 158
            +EM      V+  +  FN++++    C K+  M++  Q+    ++ + C     ++N+L
Sbjct: 292 LEEMMQGETRVRPDLMTFNSVIHG--LC-KIGWMRQALQV-RAMMAENGCRCNLVAFNLL 347

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G +   +++ A ++ DEM    LQP   T+  LI G C   +V+ A     + MR   
Sbjct: 348 IGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSE-MRHQG 406

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           ++P+   +  L+K +C  G +  A  +  EM R+  ++DA  YS++I   FK+G K    
Sbjct: 407 MEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDRN-CKLDAAAYSTMIHGAFKSGEKKIAE 465

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             LK+M + G  P++VTY+  I+ F K  D  AA  +L +M   G   +   ++ ++ G 
Sbjct: 466 EFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGY 525

Query: 339 CKDG 342
              G
Sbjct: 526 GAKG 529


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 135/263 (51%), Gaps = 12/263 (4%)

Query: 85  IFCNVI--GFYGRARLLERALQMFDEMSS----FNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           +  NVI  GF    R+ E AL    EMS+    F  Q T   FNTL+N     G +    
Sbjct: 260 VSVNVIVHGFCKEGRV-EDALNFIQEMSNQDGFFPDQYT---FNTLVNGLCKAGHVKHAI 315

Query: 139 ELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           E+  +M ++   PD  +YN +I G      +++A +  D+M+ R   P  VT+ TLI  L
Sbjct: 316 EIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTL 375

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C E +V+EA +L   ++    + PD   F SLI+GLC      +A+ + EEM     E D
Sbjct: 376 CKENQVEEATELAR-VLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPD 434

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+ LI +L   G+ +E   +LK+M+  GC  + +TYN LI GFCK      A  I D
Sbjct: 435 EFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFD 494

Query: 318 EMGDKGCKANPISYNVILGGLCK 340
           EM   G   N ++YN ++ GLCK
Sbjct: 495 EMEVHGVSRNSVTYNTLIDGLCK 517



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 167/373 (44%), Gaps = 45/373 (12%)

Query: 3   TSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKM 62
           +S ++L    R Q D   AL+LF   +  PN +    L         Y+ I+ +LGR+  
Sbjct: 48  SSDVKLLDSLRSQADDSAALRLFNLASKKPNFSPEPAL---------YEEILLRLGRSGS 98

Query: 63  FDEMQQILHQLKH---DTRIVPKEIIFCNVIGFYGRARLLERALQMFDE----------- 108
           FD+M++IL  +K+   +    P  I+  +   F  +  +L     M D+           
Sbjct: 99  FDDMRKILEDMKNSGCEMGTSPFLILIESYAQFELQDEILGVVHWMIDDFGLKPDTHFYN 158

Query: 109 ---------------------MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY 147
                                MS + ++  V  FN L+       +L     + + M  Y
Sbjct: 159 RMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSY 218

Query: 148 -VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA 206
            + PD  ++  ++ G +    L+ A ++ ++MV+     + V+   +++G C E RV++A
Sbjct: 219 GLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDA 278

Query: 207 LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266
           L   +++       PD   F +L+ GLC  G +  A+ + + M+++  + D   Y+S+IS
Sbjct: 279 LNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVIS 338

Query: 267 ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326
            L K G   E    L +M  R C PN+VTYN LIS  CKE   E A  +   +  KG   
Sbjct: 339 GLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILP 398

Query: 327 NPISYNVILGGLC 339
           +  ++N ++ GLC
Sbjct: 399 DVCTFNSLIQGLC 411



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 136/280 (48%), Gaps = 7/280 (2%)

Query: 68  QILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127
           +I H       I P    F  +I    RA  L  A+ M ++M S+ +    K F T++  
Sbjct: 174 EIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQG 233

Query: 128 KLTCGKLD---RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR-L 183
            +  G LD   R++E  Q++E   S    S N+++HG     R+EDA     EM  +   
Sbjct: 234 YIEEGDLDGALRIRE--QMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGF 291

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P   TF TL+ GLC    V  A+++  D+M      PD   + S+I GLC +GE+  A+
Sbjct: 292 FPDQYTFNTLVNGLCKAGHVKHAIEIM-DVMLQEGYDPDVYTYNSVISGLCKLGEVKEAV 350

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
              ++M+      +   Y++LIS L K  +  E   + + +  +G  P+  T+N+LI G 
Sbjct: 351 EFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C   +   A  + +EM  KGC+ +  +YN+++  LC  GK
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGK 450



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 146/289 (50%), Gaps = 6/289 (2%)

Query: 56  KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ 115
           K G  K   E+  ++ Q  +D    P    + +VI    +   ++ A++  D+M + +  
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYD----PDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCS 362

Query: 116 MTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKV 174
                +NTL++      +++   EL +++  K + PD C++N LI G  ++R    A ++
Sbjct: 363 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL 422

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
           F+EM  +  +P   T+  LI  LC + ++DEAL + +  M +         + +LI G C
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQ-MELSGCARSVITYNTLIDGFC 481

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
              ++  A  + +EM    +  ++  Y++LI  L K+ R  +   ++ +M   G KP+  
Sbjct: 482 KANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKF 541

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           TYN+L++ FC+  D + A  I+  M   GC+ + ++Y  ++ GLCK G+
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGR 590



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 4/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y+ +I+ L +    +E  ++   L     I+P    F ++I      R    A+++
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKG-ILPDVCTFNSLIQGLCLTRNHRVAMEL 422

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           F+EM S   +     +N L++   + GKLD    + + ME    +    +YN LI G   
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + ++ +A ++FDEM    +    VT+ TLI GLC   RV++A +L  D M +   KPD  
Sbjct: 483 ANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLM-DQMIMEGQKPDKF 541

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SL+   C  G++  A  + + M  +  E D   Y +LIS L KAGR      +L+ +
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI 601

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA-NPISYNVILGGLCKDG 342
           + +G       YN +I G  ++     A  +  EM ++   A + +SY ++  GLC  G
Sbjct: 602 QMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGG 660



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 2/196 (1%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC-LELRVDEAL 207
           SP+   Y  ++     S   +D  K+ ++M     +     F  LI      EL+ DE L
Sbjct: 80  SPEPALYEEILLRLGRSGSFDDMRKILEDMKNSGCEMGTSPFLILIESYAQFELQ-DEIL 138

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            +   ++  + +KPD   +  ++  L     L L      +M    I+ D   ++ LI A
Sbjct: 139 GVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKA 198

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L +A +      +L++M   G  P+  T+  ++ G+ +E D + A  I ++M + GC  +
Sbjct: 199 LCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWS 258

Query: 328 PISYNVILGGLCKDGK 343
            +S NVI+ G CK+G+
Sbjct: 259 NVSVNVIVHGFCKEGR 274


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 159/323 (49%), Gaps = 33/323 (10%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           + +++  L R+   ++ +Q+L ++K +   VP + I+  +I  Y +A+   +A +   EM
Sbjct: 13  FAILLRGLCRSNQLEKARQLLGRMK-EMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEM 71

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168
              +   TV  +  +++     G+  D +K L ++ +K  SP+  +YN+++ G    R+L
Sbjct: 72  VKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKL 131

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE----------------- 211
           ++A K+ +EM  R   P +VT+ + I GLC   RVDEA K                    
Sbjct: 132 DEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVING 191

Query: 212 --------------DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
                         D M      PD   ++SLI G C  GE+  A+G+ + M++     +
Sbjct: 192 LCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPN 251

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+SL+ AL + G   +   +L EM+ RG  P+ V+YNA I G CK E  + A  + D
Sbjct: 252 MVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFD 311

Query: 318 EMGDKGCKANPISYNVILGGLCK 340
            M ++GC  N  SY++++  LCK
Sbjct: 312 RMVERGCTPNASSYSMLVEELCK 334



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 149/298 (50%), Gaps = 4/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            ++ Y  I+  L +A    +  ++L +++ D    P    +  ++      R L+ A +M
Sbjct: 79  TVVTYTNIVDGLCKAGRTKDAVKLLDEMR-DKGCSPNIYTYNVIVEGLCEERKLDEAKKM 137

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
            +EM+       V  +N+ +     C ++D  ++    M   V+PD  SY  +I+G   S
Sbjct: 138 LEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP--VTPDVVSYTTVINGLCKS 195

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             L+ A ++ D+M  R   P +VT+ +LI G C    V+ A+ L + ++++   +P+   
Sbjct: 196 GDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKL-GCRPNMVA 254

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + SL+  L  +G +  A  +  EM R     D   Y++ I  L KA R  +  A+   M 
Sbjct: 255 YNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMV 314

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           ERGC PN+ +Y+ L+   CK+++ + A T++++  +K    + + Y V+L GLCK G+
Sbjct: 315 ERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGR 372



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 151/304 (49%), Gaps = 5/304 (1%)

Query: 42  PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLER 101
           P   +++ Y  +I  L ++   D   ++L Q+ +     P  + + ++I  + +   +ER
Sbjct: 177 PVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTN-RGCTPDVVTYSSLIDGFCKGGEVER 235

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIH 160
           A+ + D M     +  +  +N+LL      G + + +++   ME+   +PD  SYN  I 
Sbjct: 236 AMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACID 295

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G   + R++ A  VFD MV+R   P   ++  L+  LC +  +D+A+ L E     Y + 
Sbjct: 296 GLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQI- 354

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI-EMDAGIYSSLISALFKAGRKNEFPA 279
            D  ++  L+ GLC  G    A  +  +++ +KI E D   Y+ ++ +  K  + ++   
Sbjct: 355 VDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQ 414

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           I K+M ER C  N VT+N L+ G C ++    A T+L  M D+G   + ++Y  ++  +C
Sbjct: 415 IHKQMLERNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMC 473

Query: 340 KDGK 343
           K GK
Sbjct: 474 KCGK 477



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 121/257 (47%), Gaps = 38/257 (14%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           F  LL       +L++ ++L   M E    PD   YN LI G   ++    A+K   EMV
Sbjct: 13  FAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMV 72

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--------MRVYNVK----------- 220
           K    PT+VT+  ++ GLC   R  +A+KL +++        +  YNV            
Sbjct: 73  KNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLD 132

Query: 221 ---------------PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
                          PD   + S IKGLC    +  A   ++ + R  +  D   Y+++I
Sbjct: 133 EAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEA---RKFLARMPVTPDVVSYTTVI 189

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
           + L K+G  +    +L +M  RGC P+ VTY++LI GFCK  + E A  +LD M   GC+
Sbjct: 190 NGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCR 249

Query: 326 ANPISYNVILGGLCKDG 342
            N ++YN +LG L + G
Sbjct: 250 PNMVAYNSLLGALHRLG 266



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M+ +  QP   TF  L+ GLC   ++++A +L    M+     PD  ++ +LI G     
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGR-MKEMGCVPDDAIYNALISGYSKAK 59

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           +   A     EMV++        Y++++  L KAGR  +   +L EM+++GC PN  TYN
Sbjct: 60  DFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYN 119

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            ++ G C+E   + A  +L+EM  +G   + ++YN  + GLCK
Sbjct: 120 VIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCK 162



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 66/126 (52%)

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           + +PD   FA L++GLC   +L  A  +   M       D  IY++LIS   KA    + 
Sbjct: 5   SCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQA 64

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
              L EM +  C P  VTY  ++ G CK    + A  +LDEM DKGC  N  +YNVI+ G
Sbjct: 65  FKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEG 124

Query: 338 LCKDGK 343
           LC++ K
Sbjct: 125 LCEERK 130



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 129/280 (46%), Gaps = 23/280 (8%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERAL 103
           N   Y +++ +L + K  D+   ++ Q +   +IV  +I+   V+  G     R  + A 
Sbjct: 321 NASSYSMLVEELCKKKELDDAITLVEQAREKYQIV--DILLYTVLLDGLCKGGRF-DEAC 377

Query: 104 QMFDEMSSFNV-QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGC 162
            +F ++    + +  V F+N +L+      ++D+  ++ + M +    +  ++NIL+HG 
Sbjct: 378 ALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCCNVVTWNILVHGL 437

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
            V  RL DA  +   MV     P  VT+GTL+  +C   +   AL+L E+ ++   V PD
Sbjct: 438 CVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCV-PD 496

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDK----IEMDAGIYSSLISALFKAGRKNEFP 278
              +++LI GL           V E M  +      ++D  +++++I    + G  +   
Sbjct: 497 VVTYSALITGL-----------VHENMAEEAYLLFTKLDVALWNAMILGYAENGSGDLGL 545

Query: 279 AILKEMKERGCKPNSVTYNALISG-FCKEEDFEAAFTILD 317
            +  E+ E   +PN+ T+   ISG   K E    A  + D
Sbjct: 546 KLFVELIESDVEPNARTFGKEISGKLVKAESLGKARGLFD 585



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 52/95 (54%)

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M+    + DA  ++ L+  L ++ +  +   +L  MKE GC P+   YNALISG+ K +D
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           F  AF  L EM    C    ++Y  I+ GLCK G+
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGR 95


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 142/303 (46%), Gaps = 35/303 (11%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  R N++ Y  +I  L +++ F E +++L ++K  + + P    +  +I    +A  +E
Sbjct: 156 KGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKA-SGVTPDAFTYSALIHGLCKADKIE 214

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIH 160
            A QM   M+                                      +PD   Y+ +IH
Sbjct: 215 EAEQMLRRMAGSGC----------------------------------TPDVVVYSSIIH 240

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
               S +L +A K   EM K+R  P +VT+ T+I GLC   ++ EA  + + +    +V 
Sbjct: 241 AFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVL 300

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   ++++I GLC    L  A  + + M +     D   Y+++I  L K GR  E   +
Sbjct: 301 PDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYL 360

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L+ MK  GC PN VTY  LISG CK    + A  +++EM + GC  N ++YN ++ GLC 
Sbjct: 361 LQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCV 420

Query: 341 DGK 343
            G+
Sbjct: 421 SGR 423



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 148/300 (49%), Gaps = 7/300 (2%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  +   +  IIT +  A   D     L  +  D    P  + +  +I  + RA+ LE A
Sbjct: 21  FAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCD----PNVVTYTALIAAFARAKKLEEA 76

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG 161
           +++ +EM        +  +N L++       +   +++ + M E   +P+  ++N L+ G
Sbjct: 77  MKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDG 136

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 ++DA K+   MV + ++P +VT+  LI GLC   +  EA ++ E+ M+   V P
Sbjct: 137 FCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEE-MKASGVTP 195

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   +++LI GLC   ++  A  +   M       D  +YSS+I A  K+G+  E    L
Sbjct: 196 DAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTL 255

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG-CKANPISYNVILGGLCK 340
           +EM+++   P+ VTYN +I G CK      A  ILD+M + G    + ++Y+ ++ GLCK
Sbjct: 256 QEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCK 315



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 135/274 (49%), Gaps = 6/274 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L +A   +E +Q+L ++   +   P  +++ ++I  + ++  L  A +   EM
Sbjct: 200 YSALIHGLCKADKIEEAEQMLRRMAG-SGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEM 258

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY--VSPDACSYNILIHGCVVSRR 167
                   V  +NT+++     GK+   + +   M++   V PD  +Y+ +I+G   S  
Sbjct: 259 RKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDM 318

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           L +A K+ D M K    P +VT+ T+I GLC   R++EA  L + + R     P+   + 
Sbjct: 319 LVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRA-GCAPNVVTYT 377

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE- 286
           +LI GLC   ++  A  V EEM       +   Y+++++ L  +GR  E   +++ MK+ 
Sbjct: 378 TLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDG 437

Query: 287 -RGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
              C P++ TY  +++     +  + A  +L++M
Sbjct: 438 RAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 3/107 (2%)

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           C  G+L  AL + EEM       DA  ++ +I+A+  AG   +    +  ++  GC PN 
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAG---DLDGAMDHLRSMGCDPNV 57

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           VTY ALI+ F + +  E A  +L+EM ++GC  N ++YNV++  LCK
Sbjct: 58  VTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCK 104


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 175/369 (47%), Gaps = 49/369 (13%)

Query: 14  LQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL 73
           ++ DP ++ ++FK+            +  +R     +  +I        F  ++++L ++
Sbjct: 66  IEPDPPISDKIFKS---------GPKMGSYRLGDSTFYSLINNYANLGDFKSLEKVLDRM 116

Query: 74  KHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS-SFNVQMTVKFFNTLLNPKLTCG 132
           K + R++  E  F  +   YG+A L E+A+ +FD M+  F  + T K FN++LN  +  G
Sbjct: 117 KCEKRVI-FEKCFIVIFKAYGKAHLPEKAVDLFDRMACEFECKRTGKSFNSVLNVIIQEG 175

Query: 133 KLDRMKELFQ--IMEKYV--SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
              R  E +   I  K V  SP+  ++N++I        ++DA +VF +M  R+ +P + 
Sbjct: 176 LFHRALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVY 235

Query: 189 TFGTLIYGLCLELRVDEALKL-------------------------KEDIMRVYNVK--- 220
           T+ TL+ GLC   R+DEA+ L                         K D+ R   +    
Sbjct: 236 TYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNM 295

Query: 221 ------PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
                 P+   + +LI GLC  G+L  A+ + + MV  K   +   Y ++I+ L K GR 
Sbjct: 296 FLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRA 355

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            +   +L  M+ERG   N   Y+ LISG  KE   + A  +  EM  KG + N I Y+ +
Sbjct: 356 LDGACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAV 415

Query: 335 LGGLCKDGK 343
           + GLC+DGK
Sbjct: 416 IDGLCRDGK 424



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 153/300 (51%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+L ++L+I  + +  + D+  Q+   +    +  P    +C ++    +A  ++ A+ +
Sbjct: 198 NVLTFNLVIKAMCKVGLVDDAIQVFRDMTI-RKCEPDVYTYCTLMDGLCKADRIDEAVSL 256

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            DEM       +   FN L+N     G L R  +L   M  K   P+  +YN LIHG  +
Sbjct: 257 LDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCL 316

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR-VDEALKLKEDIMRVYNVKPDG 223
             +LE A  + D MV  +  P +VT+GT+I GL  + R +D A  L     R Y V  + 
Sbjct: 317 KGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCV--NE 374

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
            V+++LI GL   G+   A+ + +EM     E++  +YS++I  L + G+ ++   +L E
Sbjct: 375 YVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSE 434

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M  +GC PN+ T ++L+ GF +  +   A  +  +M       N + Y+V++ GLCKDGK
Sbjct: 435 MTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGK 494



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 127/264 (48%), Gaps = 4/264 (1%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK-LDRMK 138
           +P E+ +  +I        LE+A+ + D M S      V  + T++N  +  G+ LD   
Sbjct: 301 IPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGAC 360

Query: 139 ELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            L  + E+    +   Y+ LI G     + ++A  +F EM  +  +   + +  +I GLC
Sbjct: 361 VLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLC 420

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
            + + D+A+++  + M      P+    +SL+KG    G    A+ V ++M +     + 
Sbjct: 421 RDGKPDDAVEVLSE-MTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNE 479

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             YS LI  L K G+  E   +  +M  +GCKP+ V Y+++I+G       E A  + +E
Sbjct: 480 VCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNE 539

Query: 319 MGDKGCKANP--ISYNVILGGLCK 340
           M  +G  + P  ++YN++L  LCK
Sbjct: 540 MLCQGPDSQPDVVTYNILLNTLCK 563


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 142/258 (55%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y R   L+   ++   M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 158 PSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANEL 217

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++K + P+  ++  LI G   S R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 218 FDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 277

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 278 KGDLKQAHDLIDE-MSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDV 336

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP++ TY  +I+ FCK+ D      +L EM
Sbjct: 337 AYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEM 396

Query: 320 GDKGCKANPISYNVILGG 337
              G   + ++YNV++ G
Sbjct: 397 QRDGHVPSVVTYNVLMNG 414



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 137/264 (51%), Gaps = 3/264 (1%)

Query: 81  PKEIIFCNVIGF-YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F N++   + +   +  A  +F+ ++ + ++ +V  FNTL+N  +  G LD    
Sbjct: 122 PASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 181

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L   M    V PD  +Y++LI+G     +++DA ++FDEM+ + L P  VTF TLI G C
Sbjct: 182 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHC 241

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              RVD A+++ + ++   ++ PD   + +LI GLC  G+L  A  + +EM    ++ D 
Sbjct: 242 KSGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDK 300

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y++LI    K G         K M +   + + V Y ALISG C+E  +  A  +L E
Sbjct: 301 ITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLRE 360

Query: 319 MGDKGCKANPISYNVILGGLCKDG 342
           M   G K +  +Y +I+   CK G
Sbjct: 361 MLSAGLKPDTGTYTMIINEFCKKG 384



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 129/239 (53%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   S+N L++G + 
Sbjct: 113 YEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIR 172

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++ +++   M    +QP + T+  LI GLC E ++D+A +L ++++    + P+G 
Sbjct: 173 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDK-GLVPNGV 231

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM
Sbjct: 232 TFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEM 291

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G KP+ +TY  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 292 SMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGR 350



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G      ++   + + G +P+ V++N L+
Sbjct: 108 LVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLM 167

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 168 NGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESK 210


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 143/258 (55%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y R   L+   ++   M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 173 PSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANEL 232

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++K + P+  ++  LI G   + R++ A +V+ +M+ + L P L+T+ TLIYGLC 
Sbjct: 233 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCK 292

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ MR+  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 293 KGDLKQAQDLIDE-MRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDV 351

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G +P++ TY  +I+ FCK+ D      +L EM
Sbjct: 352 AYTALISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKKGDVWTGSKLLKEM 411

Query: 320 GDKGCKANPISYNVILGG 337
              G   + ++YNV++ G
Sbjct: 412 QRDGHVPSVVTYNVLMNG 429



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 137/264 (51%), Gaps = 3/264 (1%)

Query: 81  PKEIIFCNVIGF-YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F N++   + +   +  AL +FD ++ + ++ +V  FNTL+N  +  G LD    
Sbjct: 137 PASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 196

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L   M    V PD  +Y++LI+G     +++DA ++FDEM+ + L P  VTF TLI G C
Sbjct: 197 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHC 256

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              RVD A+++ + ++   ++ PD   + +LI GLC  G+L  A  + +EM    ++ D 
Sbjct: 257 KNGRVDLAMEVYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDK 315

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y++LI    K G         K M +   + + V Y ALISG C+E     A  +L E
Sbjct: 316 ISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLRE 375

Query: 319 MGDKGCKANPISYNVILGGLCKDG 342
           M   G + +  +Y +I+   CK G
Sbjct: 376 MLSVGLRPDTGTYTMIINEFCKKG 399



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 125/228 (54%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G +     +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 139 SLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLK 198

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
             M    +QP + T+  LI GLC E ++D+A +L ++++    + P+G  F +LI G C 
Sbjct: 199 SAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDK-GLVPNGVTFTTLIDGHCK 257

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ V ++M+   +  D   Y++LI  L K G   +   ++ EM+ +G KP+ ++
Sbjct: 258 NGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKIS 317

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 318 YTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGR 365


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 149/299 (49%), Gaps = 6/299 (2%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D E + L P  +    Y  +I  L +++  +E + +L ++     + P  +++ N+I  +
Sbjct: 304 DMEDYGLVPDGFT---YGALINGLCKSRRSNEAKALLDEMSC-AELKPNVVVYANLIDGF 359

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDA 152
            R    + A +M  EM +  VQ     ++ L+      G++DR   L  Q++     PD 
Sbjct: 360 MREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDT 419

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN++I G       +DA+++  EM    + P + T+  +I+GLC     ++A  L E+
Sbjct: 420 ITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEE 479

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M    +KP+  V+A LI G C  G +SLA  + ++M +  +  D   Y+SLI  L K G
Sbjct: 480 -MTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVG 538

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           R  E      +M+ERG  PN  TY+ LI G+ K  D E+A  ++  M D G K N + Y
Sbjct: 539 RVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIY 597



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 131/266 (49%), Gaps = 2/266 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P    +  +I  Y + R  + A ++  EM      +    +N L+      G ++   
Sbjct: 240 ISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAF 299

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
              + ME Y + PD  +Y  LI+G   SRR  +A  + DEM    L+P +V +  LI G 
Sbjct: 300 GFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGF 359

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
             E   DEA K+ ++ M    V+P+   + +L++GLC +G++  A  + ++MVRD    D
Sbjct: 360 MREGNADEAFKMIKE-MVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPD 418

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+ +I   F+   K +   +L EM+  G  PN  TY+ +I G C+  + E A  +L+
Sbjct: 419 TITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLE 478

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
           EM  KG K N   Y  ++ G C++G 
Sbjct: 479 EMTTKGLKPNAFVYAPLISGYCREGN 504



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 146/300 (48%), Gaps = 7/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y ++I  L ++   ++   +L ++     + P   ++  +I  Y R   +  A ++
Sbjct: 453 NVYTYSIMIHGLCQSGEPEKASDLLEEMT-TKGLKPNAFVYAPLISGYCREGNVSLACEI 511

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           FD+M+  NV   +  +N+L+      G+++   + F Q+ E+ + P+  +Y+ LIHG + 
Sbjct: 512 FDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLK 571

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN--VKPD 222
           +  LE A ++   M+   L+P  V +  L+       + D+  K+      + +  V  D
Sbjct: 572 NGDLESAEQLVQRMLDTGLKPNDVIYIDLLESY---FKSDDIEKVSSTFKSMLDQGVMLD 628

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
            +++  LI  L + G +  A  V   + ++    D  +YSSLIS L K   + +   IL 
Sbjct: 629 NRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILD 688

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           EM ++G  PN V YNALI G CK  D   A  + + +  KG   N ++Y  ++ G CK G
Sbjct: 689 EMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVG 748



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 126/250 (50%), Gaps = 2/250 (0%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDAC 153
           RA  +    ++ + M    +   V  ++TL+       + D  K+ L ++ E+    +  
Sbjct: 221 RADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTV 280

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN+LI G   S  +E+A+    +M    L P   T+G LI GLC   R +EA  L ++ 
Sbjct: 281 TYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDE- 339

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M    +KP+  V+A+LI G    G    A  + +EMV   ++ +   Y +L+  L K G+
Sbjct: 340 MSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQ 399

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +    +LK+M     +P+++TYN +I G  +    + AF +L EM + G   N  +Y++
Sbjct: 400 MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSI 459

Query: 334 ILGGLCKDGK 343
           ++ GLC+ G+
Sbjct: 460 MIHGLCQSGE 469



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 2/224 (0%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
            + L++     G++    E+  +M ++ ++P     N L+   + +  +   WKV + MV
Sbjct: 177 LDVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMV 236

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
              + P + T+ TLI   C     D A K+  + MR      +   +  LI GLC  G +
Sbjct: 237 GAGISPDVYTYSTLIEAYCKVREFDTAKKVLVE-MRERGCGLNTVTYNVLIAGLCRSGAV 295

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A G K++M    +  D   Y +LI+ L K+ R NE  A+L EM     KPN V Y  L
Sbjct: 296 EEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANL 355

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I GF +E + + AF ++ EM   G + N I+Y+ ++ GLCK G+
Sbjct: 356 IDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQ 399



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 138/299 (46%), Gaps = 4/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L  Y+ +I  L +    +E  +   Q++ +  ++P E  +  +I  Y +   LE A Q+
Sbjct: 523 DLYCYNSLIFGLSKVGRVEESTKYFAQMQ-ERGLLPNEFTYSGLIHGYLKNGDLESAEQL 581

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
              M    ++     +  LL        ++++   F+ M ++ V  D   Y ILIH    
Sbjct: 582 VQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSS 641

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S  +E A++V   + K    P +  + +LI GLC     ++A  + ++ M    V P+  
Sbjct: 642 SGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDE-MSKKGVDPNIV 700

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI GLC  G++S A  V   ++   +  +   Y+SLI    K G  +    +  EM
Sbjct: 701 CYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEM 760

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  P++  Y+ L +G     D E A  +++EM  +G  A+  S+N ++ G CK GK
Sbjct: 761 LATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGK 818



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 133/314 (42%), Gaps = 36/314 (11%)

Query: 65  EMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124
           E  + L Q   DT + P ++I+ +++  Y ++  +E+    F  M    V +  + +  L
Sbjct: 576 ESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGIL 635

Query: 125 LNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
           ++   + G ++    +   +EK  S PD   Y+ LI G   +   E A+ + DEM K+ +
Sbjct: 636 IHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGV 695

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P +V +  LI GLC    +  A  +   I+    + P+   + SLI G C VG++S A 
Sbjct: 696 DPNIVCYNALIDGLCKSGDISYARNVFNSIL-AKGLVPNCVTYTSLIDGSCKVGDISNAF 754

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG--------------C 289
            +  EM+   I  DA +YS L +    AG   +   +++EM  RG              C
Sbjct: 755 YLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFC 814

Query: 290 K--------------------PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           K                    PN++T   +ISG  +        TI  E+  K  ++   
Sbjct: 815 KRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAAR 874

Query: 330 SYNVILGGLCKDGK 343
            ++ +   +   GK
Sbjct: 875 HFSSLFMDMINQGK 888



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 136/313 (43%), Gaps = 22/313 (7%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I  L  +   +   ++L  ++ +   VP   ++ ++I    +    E+A  + DEM
Sbjct: 632 YGILIHNLSSSGNMEAAFRVLSGIEKNGS-VPDVHVYSSLISGLCKTADREKAFGILDEM 690

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
           S   V   +  +N L++     G +   + +F  I+ K + P+  +Y  LI G      +
Sbjct: 691 SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDI 750

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A+ +++EM+   + P    +  L  G      +++A+ L E++    +       F +
Sbjct: 751 SNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISS--FNN 808

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ G C  G++   L +   ++   +  +A    ++IS L +AG+ +E   I  E++++ 
Sbjct: 809 LVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKT 868

Query: 289 CKPNSVTYNAL------------------ISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            +  +  +++L                  I   CKE + + A  + D +  K       S
Sbjct: 869 SESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSS 928

Query: 331 YNVILGGLCKDGK 343
           Y  I+  LC+ GK
Sbjct: 929 YLAIVDNLCRKGK 941


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 151/296 (51%), Gaps = 7/296 (2%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS 110
           ++++  L +   FD M ++   +       P  + +  +I    R     +A ++FDEM 
Sbjct: 162 NMVLDGLVKKGRFDTMWKVYGDMVARGA-SPNVVTYGTLIDGCCRQGDFLKAFRLFDEMI 220

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLE 169
              +  TV  +  L+       ++   + +F+ M    + P+  +YN ++ G      ++
Sbjct: 221 EKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVK 280

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--MRVYNVKPDGQVFA 227
            A +++ EM+   L P +VTFG LI GLC   + DE +  ++ +  M  + V P+  V+ 
Sbjct: 281 KALELYQEMLGDGLLPNVVTFGILIDGLC---KTDEMVSARKFLIDMASFGVVPNIFVYN 337

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            LI G C  G LS AL +  E+ + +I  D   YS LI  L    R  E   +L+EMK++
Sbjct: 338 CLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKK 397

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G  PN+VTYN LI G+CKE + E A  +  +M +KG + N I+++ ++ G CK GK
Sbjct: 398 GFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGK 453



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 141/284 (49%), Gaps = 12/284 (4%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVK 119
           ++FDEM +         +I P  +I+  +I G  G +R+ E A  MF  M +  +   + 
Sbjct: 214 RLFDEMIE--------KKIFPTVVIYTILIRGLCGESRISE-AESMFRTMRNSGMLPNLY 264

Query: 120 FFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
            +NT+++       + +  EL+Q ++   + P+  ++ ILI G   +  +  A K   +M
Sbjct: 265 TYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDM 324

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
               + P +  +  LI G C    + EAL L  +I + + + PD   ++ LIKGLC V  
Sbjct: 325 ASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEK-HEILPDVFTYSILIKGLCGVDR 383

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           +  A G+ +EM +     +A  Y++LI    K G   +   +  +M E+G +PN +T++ 
Sbjct: 384 MEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFST 443

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           LI G+CK    EAA  +  EM  KG   + ++Y  ++ G  KDG
Sbjct: 444 LIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDG 487



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 141/295 (47%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I  L       E + +   ++ ++ ++P    +  ++  Y +   +++AL+++ EM
Sbjct: 231 YTILIRGLCGESRISEAESMFRTMR-NSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEM 289

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
               +   V  F  L++      ++   ++    M  + V P+   YN LI G   +  L
Sbjct: 290 LGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNL 349

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A  +  E+ K  + P + T+  LI GLC   R++EA  L ++ M+     P+   + +
Sbjct: 350 SEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQE-MKKKGFLPNAVTYNT 408

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G C  G +  A+ V  +M    IE +   +S+LI    KAG+      +  EM  +G
Sbjct: 409 LIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKG 468

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             P+ V Y ALI G  K+ + + AF +  EM + G   N  + + ++ GLCKDG+
Sbjct: 469 LLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGR 523



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 117/291 (40%), Gaps = 53/291 (18%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  II  L  AK++ + + ++  L    +   +  I C+V     R            E 
Sbjct: 73  YSAIIHVLTGAKLYAKARCLMRDLIQCLQNSRRSRICCSVFNVLSRL-----------ES 121

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
           S F    T   F  L+      G ++    ++  M+   +  AC  N+++ G V   R +
Sbjct: 122 SKF----TPNVFGVLIIAFSEMGLVEEALWVYYKMDVLPAMQAC--NMVLDGLVKKGRFD 175

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
             WKV+ +MV R   P +VT+G                                    +L
Sbjct: 176 TMWKVYGDMVARGASPNVVTYG------------------------------------TL 199

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           I G C  G+   A  + +EM+  KI     IY+ LI  L    R +E  ++ + M+  G 
Sbjct: 200 IDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGM 259

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            PN  TYN ++ G+CK    + A  +  EM   G   N +++ +++ GLCK
Sbjct: 260 LPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCK 310



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 91/178 (51%), Gaps = 5/178 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           ++ E H + P   ++  Y ++I  L      +E   +L ++K     +P  + +  +I  
Sbjct: 357 SEIEKHEILP---DVFTYSILIKGLCGVDRMEEADGLLQEMKKKG-FLPNAVTYNTLIDG 412

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPD 151
           Y +   +E+A+++  +M+   ++  +  F+TL++     GK++    L+ +++ K + PD
Sbjct: 413 YCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPD 472

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
             +Y  LI G       ++A+++  EM +  L P + T   LI GLC + R+ +A+KL
Sbjct: 473 VVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKL 530



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 5/130 (3%)

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI-EMDAGIYSSLISALFKAGR 273
           R+ + K    VF  LI     +G +  AL V  +M  D +  M A   + ++  L K GR
Sbjct: 118 RLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKM--DVLPAMQA--CNMVLDGLVKKGR 173

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +    +  +M  RG  PN VTY  LI G C++ DF  AF + DEM +K      + Y +
Sbjct: 174 FDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTI 233

Query: 334 ILGGLCKDGK 343
           ++ GLC + +
Sbjct: 234 LIRGLCGESR 243


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 152/369 (41%), Gaps = 72/369 (19%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL  Y++++  L      D    +   L+   ++ P  I +  ++    +   L+ AL +
Sbjct: 157 NLQTYNIVLRSLCARGDLDRAVTLFDSLRR-RQVAPDRITYSTLMCGLAKQDRLDHALDL 215

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCG--------------------------------- 132
            DEM    VQ  V  +N LL      G                                 
Sbjct: 216 LDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLC 275

Query: 133 KLDRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
           K  R KE+ ++ E+ V+    PD  +Y ILIHG   S  ++ A +V+ E++K  L     
Sbjct: 276 KFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAA 335

Query: 189 TFGTLIYGLCLELRVDEALKLKEDI-------MRVYNVK--------------------- 220
            + +L+ G C   RV EA K  +         +R YN+                      
Sbjct: 336 MYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLE 395

Query: 221 ------PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
                 PD   F +LI GLC  G  + A  + EE      ++D   YSS+I+ L   GR 
Sbjct: 396 KDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRL 455

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            +   + ++M + GCKPNS  YNALISGFC+      A  I  +M D GC    I+YN +
Sbjct: 456 VDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTL 515

Query: 335 LGGLCKDGK 343
           + GLCK  K
Sbjct: 516 IDGLCKAEK 524



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 155/301 (51%), Gaps = 3/301 (0%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R NL  Y++++  L +   F E+ ++  ++  +  + P  I +  +I    R+  ++ A 
Sbjct: 261 RPNLATYNVMLDGLCKFGRFKEVGEVWERMVANN-LQPDVITYGILIHGLCRSGDVDGAA 319

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCV 163
           +++ E+    + +    +N+L+      G++    + +         +  +YNI+I G  
Sbjct: 320 RVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLF 379

Query: 164 VSRRLEDAWKVFDEMVKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
            S  +++A +++D + K     P  VTFGTLI+GLC     ++A  + E+  RV   + D
Sbjct: 380 DSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEE-ARVSGKQLD 438

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              ++S+I GLC VG L  A+ V E+M +D  + ++ IY++LIS   +  R ++   I  
Sbjct: 439 VFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYS 498

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +M + GC P  +TYN LI G CK E ++ A ++  EM + G   +  +Y  ++ GL  D 
Sbjct: 499 KMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDK 558

Query: 343 K 343
           K
Sbjct: 559 K 559



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 157/309 (50%), Gaps = 8/309 (2%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           A+ L+P   +++ Y ++I  L R+   D   ++  ++   T +V    ++ +++  + +A
Sbjct: 292 ANNLQP---DVITYGILIHGLCRSGDVDGAARVYSEIIK-TGLVIDAAMYNSLVKGFCQA 347

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PDACS 154
             ++ A + +D  + F     ++ +N ++      G +D   EL+ ++EK V+  PD  +
Sbjct: 348 GRVQEAWKFWDS-AGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVT 406

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           +  LIHG   +     A+ +F+E      Q  + ++ ++I GLC   R+ +A+K+ E  M
Sbjct: 407 FGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEK-M 465

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
                KP+  ++ +LI G C V   S A+ +  +M  +        Y++LI  L KA + 
Sbjct: 466 DKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKY 525

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            E  ++ +EM E G  P+  TY +LI G   ++  + A +I  ++  KG K + + +N++
Sbjct: 526 QEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNIL 585

Query: 335 LGGLCKDGK 343
           + GLC  GK
Sbjct: 586 IHGLCSAGK 594



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 153/334 (45%), Gaps = 38/334 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL  Y+++I  L  + M DE  ++   L+ D   +P  + F  +I    +     +A  +
Sbjct: 367 NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTI 426

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVV 164
           F+E      Q+ V  +++++N     G+L    ++++ M+K    P++  YN LI G   
Sbjct: 427 FEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQ 486

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R  DA +++ +M      PT++T+ TLI GLC   +  EA  +  +++      PD  
Sbjct: 487 VYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVE-NGFTPDIT 545

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SLI+GL +  ++  AL + ++++   +++D  +++ LI  L  AG+ +E   +  +M
Sbjct: 546 TYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDM 605

Query: 285 KER-GCKPNSVTYNAL-----------------------------------ISGFCKEED 308
           KE+  C PN VTYN L                                   I G C  + 
Sbjct: 606 KEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDR 665

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
                 +LDE+  +G     I++N+++  + K G
Sbjct: 666 IHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYG 699



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 122/253 (48%), Gaps = 6/253 (2%)

Query: 95  RARLLERALQMFDEMS--SFNVQMT--VKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVS 149
           RAR    A   F  +S  +F  ++   ++ +N +L      G LDR   LF  +  + V+
Sbjct: 131 RARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVA 190

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PD  +Y+ L+ G     RL+ A  + DEM + R+QP +V +  L+ G       ++ +++
Sbjct: 191 PDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRV 250

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            + +++    +P+   +  ++ GLC  G       V E MV + ++ D   Y  LI  L 
Sbjct: 251 WDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLC 310

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           ++G  +    +  E+ + G   ++  YN+L+ GFC+    + A+   D  G  G + N  
Sbjct: 311 RSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLR 369

Query: 330 SYNVILGGLCKDG 342
           +YN+++ GL   G
Sbjct: 370 TYNIMIKGLFDSG 382



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 261 YSSLISALFKAGRKNEFPAILKEMKE----RGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +++L+ A  +A R ++  A    +      R   PN  TYN ++   C   D + A T+ 
Sbjct: 122 HNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLF 181

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
           D +  +    + I+Y+ ++ GL K  +
Sbjct: 182 DSLRRRQVAPDRITYSTLMCGLAKQDR 208


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/281 (32%), Positives = 143/281 (50%), Gaps = 37/281 (13%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           +  A ++FDE++  ++Q TV  FNTL+N     G LD    L   MEK    PD  +Y+ 
Sbjct: 256 ISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSA 315

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD---EALK------ 208
           LI+      +++ A  +FDEM KR L P  V F TLI+G      +D   E+ +      
Sbjct: 316 LINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKG 375

Query: 209 LKEDIMRVYN--------------------------VKPDGQVFASLIKGLCAVGELSLA 242
           L+ DI+ +YN                          ++PD   + +LI G C  G++  A
Sbjct: 376 LQPDIV-LYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETA 434

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
           L +++EM ++ IE+D   +S+L+  + K GR  +    L+EM   G KP+ VTY  ++  
Sbjct: 435 LEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDA 494

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           FCK+ D +  F +L EM   G   + ++YNV+L GLCK G+
Sbjct: 495 FCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQ 535



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 150/293 (51%), Gaps = 3/293 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            ++ ++ +I    +    DE  ++ HQ++  +R  P    +  +I    +   ++ A  +
Sbjct: 274 TVVSFNTLINGYCKVGNLDEGFRLKHQMEK-SRTRPDVFTYSALINALCKENKMDGAHGL 332

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           FDEM    +      F TL++     G++D MKE +Q ++ K + PD   YN L++G   
Sbjct: 333 FDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCK 392

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  L  A  + D M++R L+P  +T+ TLI G C    V+ AL+++++ M    ++ D  
Sbjct: 393 NGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKE-MDQNGIELDRV 451

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F++L+ G+C  G +  A     EM+R  I+ D   Y+ ++ A  K G       +LKEM
Sbjct: 452 GFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEM 511

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           +  G  P+ VTYN L++G CK    + A  +LD M + G   + I+YN +L G
Sbjct: 512 QSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEG 564



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/100 (22%), Positives = 52/100 (52%)

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
           G   E++     ++  +++ L++   K G  ++   +  E+ +R  +P  V++N LI+G+
Sbjct: 226 GFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGY 285

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           CK  + +  F +  +M     + +  +Y+ ++  LCK+ K
Sbjct: 286 CKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENK 325


>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 689

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 176/330 (53%), Gaps = 13/330 (3%)

Query: 15  QKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 74
           +KD K+A+QL+   +    D+  +P      N+  ++++I+ L +    D+  +I  ++K
Sbjct: 232 EKDHKMAMQLW---DKLLEDSSVYP------NVKTHNIMISGLSKCGRVDDCLKIWDRMK 282

Query: 75  HDTRIVPKEI-IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133
            + R   K++  + ++I        +++A  +F+E+      + V  +NT+L     CGK
Sbjct: 283 QNER--EKDLYTYSSLIHGLCDEGNVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCGK 340

Query: 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           +    EL++IME+  S +  SYNILI G + + ++++A  ++  M  +       T+G  
Sbjct: 341 IKESLELWRIMEQRNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADNTTYGIF 400

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I+GLC+   V++AL + +++        D   +AS+I  LC    L  A  + +EM +  
Sbjct: 401 IHGLCVNGYVNKALGVMQEV-ESKGGHLDVYAYASIIDCLCKKRRLEEASNLVKEMSKHG 459

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           +E+++ + ++LI  L +  R ++   +++ M + GC P  V+YN LI G C+   F  A 
Sbjct: 460 VELNSHVCNALIGGLIRDSRLSDASLLMRGMGKNGCLPTVVSYNILICGLCEAGKFGEAS 519

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
             + EM + G K +  +Y+++LGGLC+D K
Sbjct: 520 AFVKEMLENGLKPDLKTYSILLGGLCRDRK 549



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 169/336 (50%), Gaps = 14/336 (4%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L + +K+P+ A  LF +   +P          + ++ + Y  I+ +L  A+M   + +I+
Sbjct: 16  LLKSEKNPRAAFALFDSATRHPG---------YAHSAVVYHHILRRLSEARMVTHVGRIV 66

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS-FNVQMTVKFFNTLLNPKL 129
            +L         E +  +VI  YG+  + +RAL +F  M   F  +  ++ +NTLLN  +
Sbjct: 67  -ELIRSQECKCDEDVALSVIKTYGKNSMPDRALDVFKRMREIFGCEPGIRSYNTLLNAFV 125

Query: 130 TCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
              +  +++ LF   E   V+P+  +YN+LI      +  E A    + M K   +P + 
Sbjct: 126 EAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLNWMWKEGFKPDVF 185

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           ++ T+I  L    ++D+AL+L ++ M    V PD   +  LI G     +  +A+ + ++
Sbjct: 186 SYSTVINDLAKTGKLDDALELFDE-MSERRVAPDVTCYNILIDGFLKEKDHKMAMQLWDK 244

Query: 249 MVRD-KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           ++ D  +  +   ++ +IS L K GR ++   I   MK+   + +  TY++LI G C E 
Sbjct: 245 LLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNEREKDLYTYSSLIHGLCDEG 304

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + + A ++ +E+ ++    + ++YN +LGG C+ GK
Sbjct: 305 NVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCGK 340



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 159/336 (47%), Gaps = 36/336 (10%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ ++  Y  +I  L +    D+  ++  ++  + R+ P    +  +I  + + +  + A
Sbjct: 180 FKPDVFSYSTVINDLAKTGKLDDALELFDEMS-ERRVAPDVTCYNILIDGFLKEKDHKMA 238

Query: 103 LQMFDEM-SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV-SPDACSYNILIH 160
           +Q++D++    +V   VK  N +++    CG++D   +++  M++     D  +Y+ LIH
Sbjct: 239 MQLWDKLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNEREKDLYTYSSLIH 298

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK---------- 210
           G      ++ A  VF+E+V+R+    +VT+ T++ G C   ++ E+L+L           
Sbjct: 299 GLCDEGNVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKESLELWRIMEQRNSVN 358

Query: 211 -----------------EDIMRVYNVKP------DGQVFASLIKGLCAVGELSLALGVKE 247
                            ++   ++ + P      D   +   I GLC  G ++ ALGV +
Sbjct: 359 IVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADNTTYGIFIHGLCVNGYVNKALGVMQ 418

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           E+      +D   Y+S+I  L K  R  E   ++KEM + G + NS   NALI G  ++ 
Sbjct: 419 EVESKGGHLDVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDS 478

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               A  ++  MG  GC    +SYN+++ GLC+ GK
Sbjct: 479 RLSDASLLMRGMGKNGCLPTVVSYNILICGLCEAGK 514



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 122/242 (50%), Gaps = 2/242 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           + +AL +  E+ S    + V  + ++++      +L+    L + M K+ V  ++   N 
Sbjct: 410 VNKALGVMQEVESKGGHLDVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNA 469

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G +   RL DA  +   M K    PT+V++  LI GLC   +  EA    ++++   
Sbjct: 470 LIGGLIRDSRLSDASLLMRGMGKNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLE-N 528

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            +KPD + ++ L+ GLC   ++ LAL +  + ++  +E D  +++ LI  L   G+ ++ 
Sbjct: 529 GLKPDLKTYSILLGGLCRDRKIELALELWHQFLQSGLEPDVMMHNILIHGLCSVGKLDDA 588

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++  M+ R C  N VTYN L+ G+ K  D   A  I   M   G + + ISYN IL G
Sbjct: 589 MTVMANMEHRNCTANLVTYNTLMEGYFKVRDSNRATVIWGYMYKMGLQPDIISYNTILKG 648

Query: 338 LC 339
           LC
Sbjct: 649 LC 650



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 117/251 (46%), Gaps = 2/251 (0%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145
           + ++I    + R LE A  +  EMS   V++     N L+   +   +L     L + M 
Sbjct: 432 YASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLSDASLLMRGMG 491

Query: 146 KY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
           K    P   SYNILI G   + +  +A     EM++  L+P L T+  L+ GLC + +++
Sbjct: 492 KNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLENGLKPDLKTYSILLGGLCRDRKIE 551

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
            AL+L    ++   ++PD  +   LI GLC+VG+L  A+ V   M       +   Y++L
Sbjct: 552 LALELWHQFLQS-GLEPDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTL 610

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           +   FK    N    I   M + G +P+ ++YN ++ G C       A    D+  + G 
Sbjct: 611 MEGYFKVRDSNRATVIWGYMYKMGLQPDIISYNTILKGLCLCHRVSYAIEFFDDARNHGI 670

Query: 325 KANPISYNVIL 335
                ++N+++
Sbjct: 671 FPTVYTWNILV 681


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 149/299 (49%), Gaps = 6/299 (2%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D E + L P  +    Y  +I  L +++  +E + +L ++     + P  +++ N+I  +
Sbjct: 282 DMEDYGLVPDGFT---YGALINGLCKSRRSNEAKALLDEMSC-AELKPNVVVYANLIDGF 337

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDA 152
            R    + A +M  EM +  VQ     ++ L+      G++DR   L  Q++     PD 
Sbjct: 338 MREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDT 397

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN++I G       +DA+++  EM    + P + T+  +I+GLC     ++A  L E+
Sbjct: 398 ITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEE 457

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M    +KP+  V+A LI G C  G +SLA  + ++M +  +  D   Y+SLI  L K G
Sbjct: 458 -MTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVG 516

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           R  E      +M+ERG  PN  TY+ LI G+ K  D E+A  ++  M D G K N + Y
Sbjct: 517 RVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIY 575



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 126/251 (50%), Gaps = 2/251 (0%)

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPD 151
           Y + R  + A ++  EM      +    +N L+      G ++      + ME Y + PD
Sbjct: 232 YCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPD 291

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +Y  LI+G   SRR  +A  + DEM    L+P +V +  LI G   E   DEA K+ +
Sbjct: 292 GFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIK 351

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           + M    V+P+   + +L++GLC +G++  A  + ++MVRD    D   Y+ +I   F+ 
Sbjct: 352 E-MVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRH 410

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
             K +   +L EM+  G  PN  TY+ +I G C+  + E A  +L+EM  KG K N   Y
Sbjct: 411 HSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVY 470

Query: 332 NVILGGLCKDG 342
             ++ G C++G
Sbjct: 471 APLISGYCREG 481



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 145/300 (48%), Gaps = 7/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y ++I  L ++   ++   +L ++     + P   ++  +I  Y R   +  A ++
Sbjct: 431 NVYTYSIMIHGLCQSGEPEKASDLLEEMT-TKGLKPNAFVYAPLISGYCREGNVSLACEI 489

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           FD+M+  NV   +  +N+L+      G+++   + F Q+ E+ + P+  +Y+ LIHG + 
Sbjct: 490 FDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLK 549

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--MRVYNVKPD 222
           +  LE A ++   M+   L+P  V +  L+       + D+  K+      M    V  D
Sbjct: 550 NGDLESAEQLVQRMLDTGLKPNDVIYIDLLESY---FKSDDIEKVSSTFKSMLDQGVMLD 606

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
            +++  LI  L + G +  A  V   + ++    D  +YSSLIS L K   + +   IL 
Sbjct: 607 NRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILD 666

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           EM ++G  PN V YNALI G CK  D   A  + + +  KG   N ++Y  ++ G CK G
Sbjct: 667 EMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVG 726



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 1/206 (0%)

Query: 138 KELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           K L ++ E+    +  +YN+LI G   S  +E+A+    +M    L P   T+G LI GL
Sbjct: 243 KVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGL 302

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C   R +EA  L ++ M    +KP+  V+A+LI G    G    A  + +EMV   ++ +
Sbjct: 303 CKSRRSNEAKALLDE-MSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPN 361

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y +L+  L K G+ +    +LK+M     +P+++TYN +I G  +    + AF +L 
Sbjct: 362 KITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLS 421

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
           EM + G   N  +Y++++ GLC+ G+
Sbjct: 422 EMENAGISPNVYTYSIMIHGLCQSGE 447



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 139/304 (45%), Gaps = 17/304 (5%)

Query: 45  YNLLHYDLIITKLGR----AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           YN L + L  +K+GR     K F +MQ+          ++P E  +  +I  Y +   LE
Sbjct: 505 YNSLIFGL--SKVGRVEESTKYFAQMQE--------RGLLPNEFTYSGLIHGYLKNGDLE 554

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            A Q+   M    ++     +  LL        ++++   F+ M ++ V  D   Y ILI
Sbjct: 555 SAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILI 614

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           H    S  +E A++V   + K    P +  + +LI GLC     ++A  + ++ M    V
Sbjct: 615 HNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDE-MSKKGV 673

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   + +LI GLC  G++S A  V   ++   +  +   Y+SLI    K G  +    
Sbjct: 674 DPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFY 733

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +  EM   G  P++  Y+ L +G     D E A  +++EM  +G  A+  S+N ++ G C
Sbjct: 734 LYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFC 792

Query: 340 KDGK 343
           K GK
Sbjct: 793 KRGK 796



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 133/314 (42%), Gaps = 36/314 (11%)

Query: 65  EMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124
           E  + L Q   DT + P ++I+ +++  Y ++  +E+    F  M    V +  + +  L
Sbjct: 554 ESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGIL 613

Query: 125 LNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
           ++   + G ++    +   +EK  S PD   Y+ LI G   +   E A+ + DEM K+ +
Sbjct: 614 IHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGV 673

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P +V +  LI GLC    +  A  +   I+    + P+   + SLI G C VG++S A 
Sbjct: 674 DPNIVCYNALIDGLCKSGDISYARNVFNSIL-AKGLVPNCVTYTSLIDGSCKVGDISNAF 732

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG--------------C 289
            +  EM+   I  DA +YS L +    AG   +   +++EM  RG              C
Sbjct: 733 YLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFC 792

Query: 290 K--------------------PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           K                    PN++T   +ISG  +        TI  E+  K  ++   
Sbjct: 793 KRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAAR 852

Query: 330 SYNVILGGLCKDGK 343
            ++ +   +   GK
Sbjct: 853 HFSSLFMDMINQGK 866



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 136/313 (43%), Gaps = 22/313 (7%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I  L  +   +   ++L  ++ +   VP   ++ ++I    +    E+A  + DEM
Sbjct: 610 YGILIHNLSSSGNMEAAFRVLSGIEKNGS-VPDVHVYSSLISGLCKTADREKAFGILDEM 668

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
           S   V   +  +N L++     G +   + +F  I+ K + P+  +Y  LI G      +
Sbjct: 669 SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDI 728

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A+ +++EM+   + P    +  L  G      +++A+ L E++    +       F +
Sbjct: 729 SNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISS--FNN 786

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ G C  G++   L +   ++   +  +A    ++IS L +AG+ +E   I  E++++ 
Sbjct: 787 LVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKT 846

Query: 289 CKPNSVTYNAL------------------ISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            +  +  +++L                  I   CKE + + A  + D +  K       S
Sbjct: 847 SESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSS 906

Query: 331 YNVILGGLCKDGK 343
           Y  I+  LC+ GK
Sbjct: 907 YLAIVDNLCRKGK 919



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 2/100 (2%)

Query: 244 GVKEEMVRDKIEMDA--GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           G +  +++  +E  A  G + S + A  K    +    +L EM+ERGC  N+VTYN LI+
Sbjct: 206 GSQHSVLQRAVEGSAARGRHGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIA 265

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           G C+    E AF    +M D G   +  +Y  ++ GLCK 
Sbjct: 266 GLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKS 305



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 30/152 (19%)

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE---MDAGIYSSLISALFK-AGRKNE 276
           P    FA L   LCA    +LA G+  +M+R       + A I+ +L  +    AG    
Sbjct: 120 PAPDAFAHLAMSLCAGSLFNLANGLLIKMIRAYPSPPVVLASIHRALSDSGHPFAGGARR 179

Query: 277 FPAILKEMKE----RGCKPN----------SVTYNAL------------ISGFCKEEDFE 310
               L+E+ E    RG +P+          SV   A+            +  +CK  +F+
Sbjct: 180 PRGYLQEVWEGAGRRGGRPDDERSGHGSQHSVLQRAVEGSAARGRHGSALEAYCKVREFD 239

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            A  +L EM ++GC  N ++YNV++ GLC+ G
Sbjct: 240 TAKKVLVEMRERGCGLNTVTYNVLIAGLCRSG 271


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 146/297 (49%), Gaps = 6/297 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA-RLLERALQMFDE 108
           +DL++    R  + D+   I+H L      +P  + +  V+    R+ R +  A  +F E
Sbjct: 137 FDLVVKSYSRLSLIDKALSIVH-LAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKE 195

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRR 167
           M    V   V  +N L+      G +D    LF  ME K   P+  +YN LI G    R+
Sbjct: 196 MLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRK 255

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE-ALKLKEDIMRVYNVKPDGQVF 226
           ++D +K+   M  + L+P L+++  +I GLC E R+ E +  L E   R Y++  D   +
Sbjct: 256 IDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSL--DEVTY 313

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
            +LIKG C  G    AL +  EM+R  +      Y+SLI ++ KAG  N     L +M+ 
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV 373

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           RG  PN  TY  L+ GF ++     A+ +L EM D G   + ++YN ++ G C  GK
Sbjct: 374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGK 430



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 154/306 (50%), Gaps = 3/306 (0%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
            LK    NL+ Y+++I  L R     E+  +L ++      +  E+ +  +I  Y +   
Sbjct: 267 ALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSL-DEVTYNTLIKGYCKEGN 325

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
             +AL M  EM    +  +V  + +L++     G ++R  E   Q+  + + P+  +Y  
Sbjct: 326 FHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTT 385

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L+ G      + +A++V  EM      P++VT+  LI G C+  ++++A+ + ED M+  
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLED-MKEK 444

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + PD   +++++ G C   ++  AL VK EMV   I+ D   YSSLI    +  R  E 
Sbjct: 445 GLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEA 504

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + +EM   G  P+  TY ALI+ +C E D E A  + +EM +KG   + ++Y+V++ G
Sbjct: 505 CDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLING 564

Query: 338 LCKDGK 343
           L K  +
Sbjct: 565 LNKQSR 570



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 155/357 (43%), Gaps = 56/357 (15%)

Query: 38  HPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           H L P   +++ Y  +I  + +A   +   + L Q++    + P E  +  ++  + +  
Sbjct: 339 HGLTP---SVITYTSLIHSMCKAGNMNRAMEFLDQMR-VRGLCPNERTYTTLVDGFSQKG 394

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYN 156
            +  A ++  EM+      +V  +N L+N     GK+ D +  L  + EK +SPD  SY+
Sbjct: 395 YMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYS 454

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            ++ G   S  +++A +V  EMV++ ++P  +T+ +LI G C + R  EA  L E+++RV
Sbjct: 455 TVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRV 514

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             + PD   + +LI   C  G+L  AL +  EMV   +  D   YS LI+ L K  R  E
Sbjct: 515 -GLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTRE 573

Query: 277 -------------FPA-------------------------------------ILKEMKE 286
                         P+                                     + + M  
Sbjct: 574 AKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLG 633

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  KP+   YN +I G C+  D   A+T+  EM   G   + ++   ++  L K+GK
Sbjct: 634 KNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGK 690



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 139/264 (52%), Gaps = 4/264 (1%)

Query: 73  LKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132
           L+H   + P  I + ++I    +A  + RA++  D+M    +    + + TL++     G
Sbjct: 337 LRHG--LTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKG 394

Query: 133 KLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
            ++    + + M +   SP   +YN LI+G  V+ ++EDA  V ++M ++ L P +V++ 
Sbjct: 395 YMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYS 454

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           T++ G C    VDEAL++K +++    +KPD   ++SLI+G C       A  + EEM+R
Sbjct: 455 TVLSGFCRSYDVDEALRVKREMVE-KGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLR 513

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
             +  D   Y++LI+A    G   +   +  EM E+G  P+ VTY+ LI+G  K+     
Sbjct: 514 VGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTRE 573

Query: 312 AFTILDEMGDKGCKANPISYNVIL 335
           A  +L ++  +    + ++Y+ ++
Sbjct: 574 AKRLLLKLFYEESVPSDVTYHTLI 597



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 139/302 (46%), Gaps = 20/302 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +++   R+   DE  ++  ++  +  I P  I + ++I  +   R  + A  +
Sbjct: 449 DVVSYSTVLSGFCRSYDVDEALRVKREMV-EKGIKPDTITYSSLIQGFCEQRRTKEACDL 507

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           ++EM    +      +  L+N     G L++  +L  +++EK V PD  +Y++LI+G   
Sbjct: 508 YEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNK 567

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY---------------GLCLELRVDEALKL 209
             R  +A ++  ++      P+ VT+ TLI                G C++  + EA ++
Sbjct: 568 QSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQV 627

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            E ++   N KPDG  +  +I G C  G++  A  + +EMV+    +      +L+ AL 
Sbjct: 628 FESMLG-KNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALH 686

Query: 270 KAGRKNEFPAILKEMKERGCK-PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
           K G+ NE  +++  +  R C+   +     L+    +E + +    +L EM   G   N 
Sbjct: 687 KEGKVNELNSVIVHVL-RSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPNG 745

Query: 329 IS 330
           IS
Sbjct: 746 IS 747


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 158/334 (47%), Gaps = 38/334 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y+ ++ ++ R     E Q+I  ++     ++P  + F ++IG   R   L +AL  
Sbjct: 361 NAATYNTLLVEICRRDNILEAQEIFDEMSRRG-VLPDLVSFSSLIGVLARNGHLYQALMH 419

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           F EM    +      +  L++     G L D +K   +++ +    D  +YN  ++G   
Sbjct: 420 FREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCK 479

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            +   DA  +F+EMV+R + P   TF TLI G C +  +D+AL L E ++R  N+KPD  
Sbjct: 480 KKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRT-NLKPDKV 538

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G C  GE+  A  + ++M+R  I  D   Y ++++    +G   E   +  +M
Sbjct: 539 TYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQM 598

Query: 285 KERGCKPNSVT-----------------------------------YNALISGFCKEEDF 309
            E+G +PN VT                                   YN LI G+ KE + 
Sbjct: 599 LEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANL 658

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           E AF +++EM  +G + N I+YN+IL G C +GK
Sbjct: 659 EKAFILINEMEKRGLQFNIITYNLILNGFCAEGK 692



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 153/299 (51%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+   ++++  L + + F+ +   L  ++    +    + +  +I  Y R  L+E A Q+
Sbjct: 256 NVYTLNIMVNALCKDRKFENVMFFLSDMEGKG-VFADIVTYNTLINAYCREGLVEEAFQL 314

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNILIHGCVV 164
            +  SS  ++  +  +N +L      GK DR K+ L ++++  ++P+A +YN L+     
Sbjct: 315 LNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICR 374

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              + +A ++FDEM +R + P LV+F +LI  L     + +AL    ++ R   + PD  
Sbjct: 375 RDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERS-GIVPDNV 433

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++  LI G C  G LS AL +++EM+     MD   Y++ ++ L K     +   +  EM
Sbjct: 434 IYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEM 493

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ERG  P+  T+  LI G+CK+ + + A  + + M     K + ++YN ++ G CK G+
Sbjct: 494 VERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGE 552



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 146/281 (51%), Gaps = 7/281 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+  +  L + KMF +   + +++  +  +VP    F  +I  Y +   +++AL +
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMV-ERGMVPDFYTFTTLIRGYCKDGNMDKALNL 524

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           F+ M   N++     +NTL++     G++ R KEL+  ++ K + PD  SY  +++G   
Sbjct: 525 FEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCS 584

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN--VKPD 222
           S  L +A  + D+M+++ ++P LVT  TLI G C   R  +  K  E + ++ +  + PD
Sbjct: 585 SGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYC---RSGDMPKAYEYLSKMISNGIIPD 641

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + +LI G      L  A  +  EM +  ++ +   Y+ +++     G+  E   +L+
Sbjct: 642 SFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLR 701

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +M E G  P+  TY++LI+G   +++ + AF   DEM  +G
Sbjct: 702 KMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRG 742



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 153/330 (46%), Gaps = 42/330 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR--IVPKEIIFCNVIGFYGRARLLERAL 103
           +L+ +  +I  L R      + Q L   +   R  IVP  +I+  +I  + R   L  AL
Sbjct: 396 DLVSFSSLIGVLARN---GHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDAL 452

Query: 104 QMFDEMSSFNVQMTVKFFNTLLN------------------------PKLTC-------- 131
           +M DEM +    M V  +NT LN                        P            
Sbjct: 453 KMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGY 512

Query: 132 ---GKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
              G +D+   LF+ M +  + PD  +YN LI G   +  +  A +++D+M+++ + P  
Sbjct: 513 CKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDH 572

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           +++GT++ G C    + EAL L + ++    ++P+     +LIKG C  G++  A     
Sbjct: 573 ISYGTVLNGFCSSGLLPEALNLCDQMLE-KGIRPNLVTCNTLIKGYCRSGDMPKAYEYLS 631

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           +M+ + I  D+  Y++LI    K     +   ++ EM++RG + N +TYN +++GFC E 
Sbjct: 632 KMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEG 691

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + A  +L +M + G   +  +Y+ ++ G
Sbjct: 692 KMQEAEQVLRKMIEIGINPDGATYSSLING 721



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 109/225 (48%), Gaps = 6/225 (2%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEK---YVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           ++ L+   +   KL    E FQI+ +    VS +AC  N L+ G V +  ++ AW+++ E
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINAC--NKLLGGLVRTGWVDLAWEIYGE 247

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           +V+  ++  + T   ++  LC + + +  +    D M    V  D   + +LI   C  G
Sbjct: 248 VVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSD-MEGKGVFADIVTYNTLINAYCREG 306

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
            +  A  +        +E     Y++++  L K G+ +    +L EM + G  PN+ TYN
Sbjct: 307 LVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYN 366

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            L+   C+ ++   A  I DEM  +G   + +S++ ++G L ++G
Sbjct: 367 TLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNG 411



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 100/207 (48%), Gaps = 18/207 (8%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRR----------LQPTLVTFGT--LIYGLCLEL 201
           S + ++H  V  RRL +A      MV++           L  T   FG+  LIY L +  
Sbjct: 137 SLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVKVVESLISTCFYFGSVGLIYDLLVRT 196

Query: 202 RVDEALKLKE-----DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
            V +A KL+E      I+R   V         L+ GL   G + LA  +  E+VR  IE+
Sbjct: 197 YV-QAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIEL 255

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +    + +++AL K  +       L +M+ +G   + VTYN LI+ +C+E   E AF +L
Sbjct: 256 NVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLL 315

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
           +    +G +   ++YN IL GLCK GK
Sbjct: 316 NSFSSRGMEPGLLTYNAILYGLCKIGK 342



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 76/146 (52%), Gaps = 2/146 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  R NL+  + +I    R+    +  + L ++  +  I+P    +  +I  Y +   LE
Sbjct: 601 KGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNG-IIPDSFSYNTLIDGYLKEANLE 659

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILI 159
           +A  + +EM    +Q  +  +N +LN     GK+   +++ + ++E  ++PD  +Y+ LI
Sbjct: 660 KAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLI 719

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQP 185
           +G V    +++A++  DEM++R L P
Sbjct: 720 NGHVSQDNMKEAFRFHDEMLQRGLVP 745


>gi|343887304|dbj|BAK61850.1| PPR containing protein [Citrus unshiu]
          Length = 567

 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 148/295 (50%), Gaps = 6/295 (2%)

Query: 47  LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMF 106
           L  Y+ ++  L R       ++  HQ+  +  + P    +  +I  Y +  ++E A ++F
Sbjct: 158 LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVF 217

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PDACSYNILIHGCVV 164
           D M+   V+  +  +NT++N     G ++  + +F  M       P+  +Y  LI G   
Sbjct: 218 DVMT---VKPNLLAYNTMINGFCKKGDMESARLVFDRMMSGEDCLPNHVTYTTLIDGYCK 274

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              LE+A K  +EM+ R  +P  +T+  +IYGLC+  RVDEA K+    MR+   K +  
Sbjct: 275 KGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEA-KMLMAKMRLNGFKDNVS 333

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
              S++KGLC VG+   A+G    ++   +  D   Y  +I+   K G+ +E  ++LKEM
Sbjct: 334 THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEM 393

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + RG KP   ++NA+     +  + + A  +L +M    C  N +SYN I+ GLC
Sbjct: 394 RARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLC 448



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 145/334 (43%), Gaps = 21/334 (6%)

Query: 15  QKDPKLALQLFK---NPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILH 71
           Q +P  AL  F    NPNPNPN  + H   P       Y  I   L    +      +L 
Sbjct: 65  QTNPYHALFFFNWASNPNPNPN--KYHHTTPC------YTAITDVLLSHSLISIAASLL- 115

Query: 72  QLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131
             K+  ++   +     +I  YG    ++ A+  F +         +  +N+LL   +  
Sbjct: 116 --KNSNKL--SDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRV 171

Query: 132 GKLDRMKELFQ--IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
             +   +E F   + E  V PD  +Y  +I G      +E+A KVFD M    ++P L+ 
Sbjct: 172 NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMT---VKPNLLA 228

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           + T+I G C +  ++ A  + + +M   +  P+   + +LI G C  GEL  A     EM
Sbjct: 229 YNTMINGFCKKGDMESARLVFDRMMSGEDCLPNHVTYTTLIDGYCKKGELEEAKKCMNEM 288

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           +      +   Y+++I  L   GR +E   ++ +M+  G K N  T+ +++ G C    F
Sbjct: 289 MNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKF 348

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + A   L  + +     +  SY V++ G CK GK
Sbjct: 349 DQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGK 382



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/309 (19%), Positives = 121/309 (39%), Gaps = 38/309 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NLL Y+ +I    +    +  + +  ++      +P  + +  +I  Y +   LE A + 
Sbjct: 225 NLLAYNTMINGFCKKGDMESARLVFDRMMSGEDCLPNHVTYTTLIDGYCKKGELEEAKKC 284

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF------------------------ 141
            +EM +   +     +N ++      G++D  K L                         
Sbjct: 285 MNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV 344

Query: 142 ------------QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
                        +ME  ++PD  SY ++I+G     + ++A  +  EM  R L+PT+ +
Sbjct: 345 VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFS 404

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC-AVGELSLALGVKEE 248
           F  +   L     +D A+ L + + ++ +  P+   + ++I GLC A G +     + + 
Sbjct: 405 FNAVFRILVENGELDRAILLLKQMPQM-DCLPNFVSYNTIICGLCMAKGRMQDVEDLVDR 463

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M+R    +D  +YS L+    + G       I  EM  +       +++ L+   C +  
Sbjct: 464 MIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKYVIGLESFSVLVKQLCAKGK 523

Query: 309 FEAAFTILD 317
              A  + D
Sbjct: 524 VTEAEKLFD 532



 Score = 37.7 bits (86), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 76/178 (42%), Gaps = 7/178 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+++I    +    DE   +L +++    + P    F  V         L+RA+ +  +M
Sbjct: 370 YEVVINGFCKIGKSDEAISLLKEMRARG-LKPTVFSFNAVFRILVENGELDRAILLLKQM 428

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP----DACSYNILIHGCVVS 165
              +       +NT++     C    RM+++  ++++ +      D   Y+ L+ G    
Sbjct: 429 PQMDCLPNFVSYNTIICG--LCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEE 486

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
             +E+  ++  EMV ++    L +F  L+  LC + +V EA KL +   R   V  D 
Sbjct: 487 GNVENVMQIAHEMVTKKYVIGLESFSVLVKQLCAKGKVTEAEKLFDTCSRCPAVDVDS 544


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 153/298 (51%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y++II  L + K   +  Q+  ++    RI P  + F ++I  +     L+ A  +
Sbjct: 198 DVVMYNIIINSLCKDKAVSDAYQLYSEMI-TKRISPDVVTFNSLILGFCVVGQLKEAFGL 256

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           F EM   N+   V  F+ L++     G + R K +  +M K  V PD  +Y+ L+ G  +
Sbjct: 257 FHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCL 316

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +  A  VF  M +  + P   ++  +I GL     VDEAL L ++ M    + PD  
Sbjct: 317 VNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKE-MCCKGIAPDTV 375

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SLI GLC +G +S A  + +EM  + I  D   Y+SLI  L K    ++  A++K++
Sbjct: 376 TYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKI 435

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           K++G +P+  TYN LI G CK    + A  +  ++  KG   N  +YN+++ GLCK+G
Sbjct: 436 KDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEG 493



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 134/278 (48%), Gaps = 37/278 (13%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           ALQM  ++    V   V  +N ++N       +    +L+ +++ K +SPD  ++N LI 
Sbjct: 183 ALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLIL 242

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G  V  +L++A+ +F EMV + + P + TF  L+  LC +  +  A  +   +M+   V 
Sbjct: 243 GFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMK-QGVI 301

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   ++SL+ G C V E++ A  V   M R  +   A  Y+ +I+ L K    +E  ++
Sbjct: 302 PDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSL 361

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG---------------CK 325
            KEM  +G  P++VTYN+LI G CK      A+ ++DEM + G               CK
Sbjct: 362 FKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCK 421

Query: 326 ANPI--------------------SYNVILGGLCKDGK 343
            + I                    +YN+++ GLCK G+
Sbjct: 422 NHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGR 459



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 138/309 (44%), Gaps = 38/309 (12%)

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130
           HQL+    I P  + F  ++  Y     +  A  +F ++       T   FNTL+N    
Sbjct: 83  HQLELKG-ITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICL 141

Query: 131 CGKLDR------------------------------------MKELFQIMEKYVSPDACS 154
            GKL                                      ++ L +I  K V+ D   
Sbjct: 142 NGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVM 201

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YNI+I+     + + DA++++ EM+ +R+ P +VTF +LI G C+  ++ EA  L  + M
Sbjct: 202 YNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHE-M 260

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
            + N+ PD   F+ L+  LC  G ++ A  +   M++  +  D   YSSL+         
Sbjct: 261 VLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEV 320

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           N+   +   M   G  P++ +YN +I+G  K +  + A ++  EM  KG   + ++YN +
Sbjct: 321 NKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSL 380

Query: 335 LGGLCKDGK 343
           + GLCK G+
Sbjct: 381 IDGLCKLGR 389



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 123/246 (50%), Gaps = 2/246 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           ++P  + + +++  Y     + +A  +F  MS   V      +N ++N       +D   
Sbjct: 300 VIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEAL 359

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            LF+ M  K ++PD  +YN LI G     R+  AW++ DEM    +   ++T+ +LI  L
Sbjct: 360 SLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVL 419

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C    +D+A+ L + I +   ++P    +  LI GLC  G L  A  V ++++     ++
Sbjct: 420 CKNHHIDKAIALVKKI-KDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVN 478

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           A  Y+ +I+ L K G  NE   +L +M+  G  P++VTY  +I    ++++ E A  +L 
Sbjct: 479 AWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLR 538

Query: 318 EMGDKG 323
           EM  +G
Sbjct: 539 EMIIRG 544



 Score = 45.1 bits (105), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 261 YSSLISALFKAGRKNEFPAIL--KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
           ++ ++ ++ KA   +   AI    +++ +G  P  VT+N L++ +C   +   AF+I  +
Sbjct: 60  FNKILGSIVKANNNHYTTAISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAFSIFAK 119

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           +   G     I++N ++ G+C +GK
Sbjct: 120 ILKLGYHPTTITFNTLINGICLNGK 144


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 158/305 (51%), Gaps = 6/305 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP   NL+ ++ ++  + +A   ++ +++  ++  +  + P  + +  ++G Y +    
Sbjct: 223 LKP---NLVTFNSVVNGICKAGRMEDARKVFDEMVKEG-LAPDGVSYNTLVGGYCKVGCS 278

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
             AL +F EM+   +   V  F +L++     G L+R   L + M E+ +  +  ++  L
Sbjct: 279 HEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTAL 338

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G      L+DA     EM + R+QP++V +  LI G C+  R+DEA +L  + M    
Sbjct: 339 IDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVRE-MEAKG 397

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           VKPD   +++++   C  G+   A  + ++M+ + +  DA  YSSLI  L +  R  +  
Sbjct: 398 VKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAH 457

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            + K M   G +P+ VTY +LI G CKE + E A ++ DEM   G   + ++Y+V++ GL
Sbjct: 458 VLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGL 517

Query: 339 CKDGK 343
            K  +
Sbjct: 518 SKSAR 522



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 160/299 (53%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y++++  L       E   +L  ++      P  + +  ++  + RA  ++RA ++
Sbjct: 156 NVYTYNILVRALCGRGHRKEALSVLRDMR-GAGCDPNAVTYNTLVAAFCRAGEVDRAERL 214

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            D M    ++  +  FN+++N     G+++  +++F +++++ ++PD  SYN L+ G   
Sbjct: 215 VDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCK 274

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
                +A  VF EM ++ + P +VTF +LI+ +C    ++ A+ L  + MR   ++ +  
Sbjct: 275 VGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVRE-MRERGLQMNEI 333

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G L  AL    EM + +I+     Y++LI+     GR +E   +++EM
Sbjct: 334 TFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREM 393

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + +G KP+ VTY+ ++S +CK  D  +AF +  +M + G   + I+Y+ ++  LC++ +
Sbjct: 394 EAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKR 452



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 133/251 (52%), Gaps = 12/251 (4%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----VSPDACS 154
           L  A + FD M S  V   V  +N L+  +  CG+  R KE   ++         P+A +
Sbjct: 138 LPSARRFFDSMLSDGVAPNVYTYNILV--RALCGRGHR-KEALSVLRDMRGAGCDPNAVT 194

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YN L+     +  ++ A ++ D M +  L+P LVTF +++ G+C   R+++A K+ ++++
Sbjct: 195 YNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMV 254

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           +   + PDG  + +L+ G C VG    AL V  EM R  I  D   ++SLI  + KAG  
Sbjct: 255 K-EGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNL 313

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP--ISYN 332
                +++EM+ERG + N +T+ ALI GFCK+   + A   + EM  + C+  P  + YN
Sbjct: 314 ERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREM--RQCRIQPSVVCYN 371

Query: 333 VILGGLCKDGK 343
            ++ G C  G+
Sbjct: 372 ALINGYCMVGR 382



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 135/278 (48%), Gaps = 17/278 (6%)

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
            EI F  +I  + +   L+ AL    EM    +Q +V  +N L+N     G++D  +EL 
Sbjct: 331 NEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELV 390

Query: 142 QIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
           + ME K V PD  +Y+ ++     +     A+++  +M++  + P  +T+ +LI  LC E
Sbjct: 391 REMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEE 450

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            R+ +A  L ++++ +  ++PD   + SLI G C  G +  AL + +EMV+  +  D   
Sbjct: 451 KRLGDAHVLFKNMISL-GLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVT 509

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN---------------ALISGFCK 305
           YS LI+ L K+ R  E   +L ++      P ++ Y+               AL+ GFC 
Sbjct: 510 YSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCM 569

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +     A  +   + D+    +   Y+V++ G C++G 
Sbjct: 570 KGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGN 607



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 141/312 (45%), Gaps = 23/312 (7%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           + EA  +KP   +++ Y  I++   +        Q+  Q+  +  ++P  I + ++I   
Sbjct: 392 EMEAKGVKP---DVVTYSTILSAYCKNGDTHSAFQLNQQMLENG-VLPDAITYSSLIRVL 447

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDA 152
              + L  A  +F  M S  +Q     + +L++     G ++R   L   M K  V PD 
Sbjct: 448 CEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDV 507

Query: 153 CSYNILIHGCVVSRRLEDAWKV---------------FDEMVKRRLQPTLVTFGTLIYGL 197
            +Y++LI+G   S R ++A ++               +D +++      L +   L+ G 
Sbjct: 508 VTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGF 567

Query: 198 CLELRVDEALKLKEDIM-RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           C++  ++EA K+ + I+ R +N+  DG V++ LI G C  G +  AL   ++M++     
Sbjct: 568 CMKGLMNEADKVYQSILDRNWNL--DGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAP 625

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           ++    SLI  LF+ G   E   +++++       ++    ALI    KE + +A   +L
Sbjct: 626 NSTSTISLIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKEGNVDAVLDVL 685

Query: 317 DEMGDKGCKANP 328
             M   G   +P
Sbjct: 686 HGMARDGLLPSP 697


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 157/300 (52%), Gaps = 7/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L  YD++I      K   E + +L ++  D  + P+ I +  +I  + R   +E+A ++
Sbjct: 275 DLYTYDILINGFCMEKRSREAKLMLLEMI-DVGLKPEPITYNALIDGFMRQGDIEQAFRI 333

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
            DEM +  ++  +  +NTLLN     GK+++  E+ Q +MEK V PD+ +Y++LI G   
Sbjct: 334 KDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCR 393

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL--ELRVDEALKLKEDIMRVYNVKPD 222
            + +  A+++ DEM KR+L PT++T+  +I GLC    L+   A+ L+E +M    +KP+
Sbjct: 394 GQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAI-LREMVMN--GLKPN 450

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
             V+ +L+      G +  +  + E M    I  D   Y+SLI    KA R  E    L 
Sbjct: 451 AVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLM 510

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           EM ER  +PN+ TY A I G+ K  + E A    +EM   G   N   Y  ++ G CK+G
Sbjct: 511 EMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEG 570



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 165/334 (49%), Gaps = 38/334 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ ++ ++  + +A   ++  +I+ ++  +  + P    +  +I  + R + + RA ++
Sbjct: 345 NLIIWNTLLNGVCKAGKMEKALEIMQEM-MEKGVEPDSQTYSLLIEGHCRGQNMARAFEL 403

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLD------------------------------ 135
            DEM    +  TV  ++ ++N    CG L                               
Sbjct: 404 LDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAK 463

Query: 136 --RMKELFQIMEKY----VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
             R++E   I+E+     + PD   YN LI G   ++R+E+A     EM++RRL+P   T
Sbjct: 464 EGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHT 523

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           +G  I G      ++ A +   +++    V P+  ++ +LI+G C  G ++ A  V   +
Sbjct: 524 YGAFIDGYSKAGEMEIADRYFNEMLSC-GVLPNVGIYTALIEGHCKEGNVTEAFSVFRFI 582

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           +  ++  D   YS LI  L + G+ +E   I  E++E+G  PN+ TYN+LISG CK+ + 
Sbjct: 583 LSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNV 642

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + A  +L+EM  KG   + ++YN+++ GLCK G+
Sbjct: 643 DKASQLLEEMCIKGINPDIVTYNILIDGLCKAGE 676



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 153/295 (51%), Gaps = 4/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I    +AK  +E +  L ++  + R+ P    +   I  Y +A  +E A + F+EM
Sbjct: 489 YNSLIIGFCKAKRMEEARTYLMEML-ERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEM 547

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRL 168
            S  V   V  +  L+      G +     +F+ I+ + V  D  +Y++LIHG   + ++
Sbjct: 548 LSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKM 607

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A+ +F E+ ++ L P   T+ +LI G C +  VD+A +L E+ M +  + PD   +  
Sbjct: 608 HEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEE-MCIKGINPDIVTYNI 666

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI GLC  GE+  A  + +++    +  +   Y++++    K+        +L+EM  RG
Sbjct: 667 LIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG 726

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             P++  YN +++  CKEE FE A  +  EM +KG  A+ +S+N ++ G CK GK
Sbjct: 727 VPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGYCKSGK 780



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 148/280 (52%), Gaps = 19/280 (6%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +IF  ++  Y +   L  A+ +F    +F  + ++   N+LL   L   K++   ++
Sbjct: 152 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 211

Query: 141 FQIMEKY-VSPDACSY-NILIHGCVV----------------SRRLEDAWKVFDEMVKRR 182
           F  M  + V PD  +Y N++   C V                +R L++A ++   MV + 
Sbjct: 212 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKG 271

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
           L P L T+  LI G C+E R  EA  +  +++ V  +KP+   + +LI G    G++  A
Sbjct: 272 LVPDLYTYDILINGFCMEKRSREAKLMLLEMIDV-GLKPEPITYNALIDGFMRQGDIEQA 330

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
             +K+EMV   IE +  I+++L++ + KAG+  +   I++EM E+G +P+S TY+ LI G
Sbjct: 331 FRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEG 390

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            C+ ++   AF +LDEM  +      ++Y+VI+ GLC+ G
Sbjct: 391 HCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCG 430



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 147/305 (48%), Gaps = 6/305 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP   N + Y  ++T   +    +E + IL +++ +  I+P    + ++I  + +A+ +
Sbjct: 447 LKP---NAVVYTTLMTAHAKEGRVEESRMILERMR-EQGILPDVFCYNSLIIGFCKAKRM 502

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNIL 158
           E A     EM    ++     +   ++     G+++     F +++   V P+   Y  L
Sbjct: 503 EEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTAL 562

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G      + +A+ VF  ++ RR+   + T+  LI+GL    ++ EA  +  ++     
Sbjct: 563 IEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQE-KG 621

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + P+   + SLI G C  G +  A  + EEM    I  D   Y+ LI  L KAG      
Sbjct: 622 LLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAK 681

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +  +++ RG  PN VTY A++ G+CK ++  AAF +L+EM  +G   +   YNVIL   
Sbjct: 682 NLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFC 741

Query: 339 CKDGK 343
           CK+ K
Sbjct: 742 CKEEK 746



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 134/248 (54%), Gaps = 4/248 (1%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL--FQIMEKYVSPDA 152
           +ARLL+ A+++   M    +   +  ++ L+N      K  R  +L   ++++  + P+ 
Sbjct: 253 KARLLDEAIELKRSMVDKGLVPDLYTYDILIN-GFCMEKRSREAKLMLLEMIDVGLKPEP 311

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN LI G +    +E A+++ DEMV   ++  L+ + TL+ G+C   ++++AL++ ++
Sbjct: 312 ITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQE 371

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           +M    V+PD Q ++ LI+G C    ++ A  + +EM + K+      YS +I+ L + G
Sbjct: 372 MME-KGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCG 430

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
                 AIL+EM   G KPN+V Y  L++   KE   E +  IL+ M ++G   +   YN
Sbjct: 431 NLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYN 490

Query: 333 VILGGLCK 340
            ++ G CK
Sbjct: 491 SLIIGFCK 498



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 145/294 (49%), Gaps = 4/294 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I  L R     E   I  +L+ +  ++P    + ++I    +   +++A Q+ +EM
Sbjct: 594 YSVLIHGLSRNGKMHEAFGIFSELQ-EKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 652

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRL 168
               +   +  +N L++     G+++R K LF  +E + ++P+  +Y  ++ G   S+  
Sbjct: 653 CIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNP 712

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
             A+++ +EM+ R + P    +  ++   C E + ++AL L ++++           F +
Sbjct: 713 TAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLE--KGFASTVSFNT 770

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI+G C  G+L  A  + EEM+  +   +   Y+SLI    KAG   E   +  EM+ER 
Sbjct: 771 LIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERN 830

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             P + TY +L+ G+    +      + +EM  KG + + ++Y V++   C++G
Sbjct: 831 VMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREG 884



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 27/198 (13%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P   S N L+   +   ++E  WKVFD M   ++ P + T+  +I   C           
Sbjct: 187 PSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHC----------- 235

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGE----LSLALGVKEEMVRDKIEMDAGIYSSLI 265
                +V NVK   +V       L  +GE    L  A+ +K  MV   +  D   Y  LI
Sbjct: 236 -----KVGNVKDAKRV-------LLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILI 283

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
           +      R  E   +L EM + G KP  +TYNALI GF ++ D E AF I DEM   G +
Sbjct: 284 NGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIE 343

Query: 326 ANPISYNVILGGLCKDGK 343
           AN I +N +L G+CK GK
Sbjct: 344 ANLIIWNTLLNGVCKAGK 361



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 135/297 (45%), Gaps = 17/297 (5%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-G 91
           +D E   L P   N + Y  ++    ++K      Q+L ++    R VP +    NVI  
Sbjct: 685 DDIEGRGLTP---NCVTYAAMVDGYCKSKNPTAAFQLLEEML--LRGVPPDAFIYNVILN 739

Query: 92  FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSP 150
           F  +    E+AL +F EM       TV F NTL+      GKL     L + ++EK   P
Sbjct: 740 FCCKEEKFEKALDLFQEMLEKGFASTVSF-NTLIEGYCKSGKLQEANHLLEEMIEKQFIP 798

Query: 151 DACSYNILI-HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           +  +Y  LI H C     + +A +++ EM +R + PT  T+ +L++G      + E   L
Sbjct: 799 NHVTYTSLIDHNCKAGM-MGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSAL 857

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI-----YSSL 264
            E+ M    ++PD   +  +I   C  G +  A  +K+E++   + M +G        S+
Sbjct: 858 FEE-MVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRLGLPTCSV 916

Query: 265 ISALFK-AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
           I+  F+ AG  +E   +L+ M + G   N+ +   L+ G     + E +  +L +M 
Sbjct: 917 IARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQMA 973


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 158/334 (47%), Gaps = 38/334 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y+ ++ ++ R     E Q+I  ++     ++P  + F ++IG   R   L +AL  
Sbjct: 361 NAATYNTLLVEICRRDNILEAQEIFDEMSRRG-VLPDLVSFSSLIGVLARNGHLYQALMH 419

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           F EM    +      +  L++     G L D +K   +++ +    D  +YN  ++G   
Sbjct: 420 FREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCK 479

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            +   DA  +F+EMV+R + P   TF TLI G C +  +D+AL L E ++R  N+KPD  
Sbjct: 480 KKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRT-NLKPDKV 538

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G C  GE+  A  + ++M+R  I  D   Y ++++    +G   E   +  +M
Sbjct: 539 TYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQM 598

Query: 285 KERGCKPNSVT-----------------------------------YNALISGFCKEEDF 309
            E+G +PN VT                                   YN LI G+ KE + 
Sbjct: 599 LEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANL 658

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           E AF +++EM  +G + N I+YN+IL G C +GK
Sbjct: 659 EKAFILINEMEKRGLQFNIITYNLILNGFCAEGK 692



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 153/299 (51%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+   ++++  L + + F+ +   L  ++    +    + +  +I  Y R  L+E A Q+
Sbjct: 256 NVYTLNIMVNALCKDRKFENVMFFLSDMEGKG-VFADIVTYNTLINAYCREGLVEEAFQL 314

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNILIHGCVV 164
            +  SS  ++  +  +N +L      GK DR K+ L ++++  ++P+A +YN L+     
Sbjct: 315 LNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICR 374

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              + +A ++FDEM +R + P LV+F +LI  L     + +AL    ++ R   + PD  
Sbjct: 375 RDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERS-GIVPDNV 433

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++  LI G C  G LS AL +++EM+     MD   Y++ ++ L K     +   +  EM
Sbjct: 434 IYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEM 493

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ERG  P+  T+  LI G+CK+ + + A  + + M     K + ++YN ++ G CK G+
Sbjct: 494 VERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGE 552



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 146/281 (51%), Gaps = 7/281 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+  +  L + KMF +   + +++  +  +VP    F  +I  Y +   +++AL +
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMV-ERGMVPDFYTFTTLIRGYCKDGNMDKALNL 524

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           F+ M   N++     +NTL++     G++ R KEL+  ++ K + PD  SY  +++G   
Sbjct: 525 FEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCS 584

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN--VKPD 222
           S  L +A  + D+M+++ ++P LVT  TLI G C   R  +  K  E + ++ +  + PD
Sbjct: 585 SGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYC---RSGDMPKAYEYLSKMISNGIIPD 641

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + +LI G      L  A  +  EM +  ++ +   Y+ +++     G+  E   +L+
Sbjct: 642 SFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLR 701

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +M E G  P+  TY++LI+G   +++ + AF   DEM  +G
Sbjct: 702 KMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRG 742



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 153/330 (46%), Gaps = 42/330 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR--IVPKEIIFCNVIGFYGRARLLERAL 103
           +L+ +  +I  L R      + Q L   +   R  IVP  +I+  +I  + R   L  AL
Sbjct: 396 DLVSFSSLIGVLARN---GHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDAL 452

Query: 104 QMFDEMSSFNVQMTVKFFNTLLN------------------------PKLTC-------- 131
           +M DEM +    M V  +NT LN                        P            
Sbjct: 453 KMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGY 512

Query: 132 ---GKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
              G +D+   LF+ M +  + PD  +YN LI G   +  +  A +++D+M+++ + P  
Sbjct: 513 CKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDH 572

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           +++GT++ G C    + EAL L + ++    ++P+     +LIKG C  G++  A     
Sbjct: 573 ISYGTVLNGFCSSGLLPEALNLCDQMLE-KGIRPNLVTCNTLIKGYCRSGDMPKAYEYLS 631

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           +M+ + I  D+  Y++LI    K     +   ++ EM++RG + N +TYN +++GFC E 
Sbjct: 632 KMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEG 691

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + A  +L +M + G   +  +Y+ ++ G
Sbjct: 692 KMQEAEQVLRKMIEIGINPDGATYSSLING 721



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 101/209 (48%), Gaps = 18/209 (8%)

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRR----------LQPTLVTFGT--LIYGLCL 199
           + S + ++H  V  RRL +A      MV++           L  T   FG+  LIY L +
Sbjct: 135 SLSLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVKVVESLISTCFYFGSVGLIYDLLV 194

Query: 200 ELRVDEALKLKE-----DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
              V +A KL+E      I+R   V         L+ GL   G + LA  +  E+VR  I
Sbjct: 195 RTYV-QAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGI 253

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           E++    + +++AL K  +       L +M+ +G   + VTYN LI+ +C+E   E AF 
Sbjct: 254 ELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQ 313

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +L+    +G +   ++YN IL GLCK GK
Sbjct: 314 LLNSFSSRGMEPGLLTYNAILYGLCKIGK 342



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 109/225 (48%), Gaps = 6/225 (2%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEK---YVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           ++ L+   +   KL    E FQI+ +    VS +AC  N L+ G V +  ++ AW+++ E
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINAC--NKLLGGLVRTGWVDLAWEIYGE 247

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           +V+  ++  + T   ++  LC + + +  +    D M    V  D   + +LI   C  G
Sbjct: 248 VVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSD-MEGKGVFADIVTYNTLINAYCREG 306

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
            +  A  +        +E     Y++++  L K G+ +    +L EM + G  PN+ TYN
Sbjct: 307 LVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYN 366

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            L+   C+ ++   A  I DEM  +G   + +S++ ++G L ++G
Sbjct: 367 TLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNG 411



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 76/146 (52%), Gaps = 2/146 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  R NL+  + +I    R+    +  + L ++  +  I+P    +  +I  Y +   LE
Sbjct: 601 KGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNG-IIPDSFSYNTLIDGYLKEANLE 659

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILI 159
           +A  + +EM    +Q  +  +N +LN     GK+   +++ + ++E  ++PD  +Y+ LI
Sbjct: 660 KAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLI 719

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQP 185
           +G V    +++A++  DEM++R L P
Sbjct: 720 NGHVSQDNMKEAFRFHDEMLQRGLVP 745


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 143/283 (50%), Gaps = 10/283 (3%)

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
           MFD+M  + ++        P  +I+  +I    +++ ++ AL + + M    +   V  +
Sbjct: 173 MFDQMVGMGYK--------PNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTY 224

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           N+L++   + G+      +   M K  + PD  ++N LI  CV   R+ +A + ++EM++
Sbjct: 225 NSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIR 284

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           R L P +VT+  LIYGLC+  R+DEA ++    M      PD   ++ LI G C   ++ 
Sbjct: 285 RSLDPDIVTYSLLIYGLCMYSRLDEAEEMF-GFMVSKGCFPDVVTYSILINGYCKSKKVE 343

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
             + +  EM +  +  +   Y+ LI    +AG+ N    I + M   G  PN +TYN L+
Sbjct: 344 HGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLL 403

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            G C     E A  IL +M   G  A+ ++YN+I+ G+CK G+
Sbjct: 404 HGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGE 446



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 145/299 (48%), Gaps = 11/299 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQMFDE 108
           +  +++ + + K +D +  +  Q++     +P  +  CN++   + R   L  AL    +
Sbjct: 84  FSRLLSAISKMKKYDVVIYLWEQMQMLG--IPHNLCTCNILLNCFCRCSQLSLALSFLGK 141

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHGCVV 164
           M     + ++  F +LLN      + DR+ +   + ++ V     P+   YN +I G   
Sbjct: 142 MIKLGHEPSIVTFGSLLNGFC---RGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCK 198

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S+++++A  + + M K  + P +VT+ +LI GLC   R  +A ++    M    + PD  
Sbjct: 199 SKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVS-CMTKREIYPDVF 257

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI      G +S A    EEM+R  ++ D   YS LI  L    R +E   +   M
Sbjct: 258 TFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFM 317

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +GC P+ VTY+ LI+G+CK +  E    +  EM  +G   N ++Y +++ G C+ GK
Sbjct: 318 VSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGK 376



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 152/301 (50%), Gaps = 3/301 (0%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           ++ N++ Y+ II  L ++K  D    +L++++ D  I P  + + ++I     +     A
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDG-IGPDVVTYNSLISGLCSSGRWSDA 240

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHG 161
            +M   M+   +   V  FN L++  +  G++   +E ++ ++ + + PD  +Y++LI+G
Sbjct: 241 TRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYG 300

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
             +  RL++A ++F  MV +   P +VT+  LI G C   +V+  +KL  + M    V  
Sbjct: 301 LCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCE-MSQRGVVR 359

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   +  LI+G C  G+L++A  +   MV   +  +   Y+ L+  L   G+  +   IL
Sbjct: 360 NTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVIL 419

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            +M++ G   + VTYN +I G CK  +   A+ I   +  +G   +  +Y  ++ GL K 
Sbjct: 420 ADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKK 479

Query: 342 G 342
           G
Sbjct: 480 G 480


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 151/296 (51%), Gaps = 7/296 (2%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS 110
           ++++  L +   FD M ++   +       P  + +  +I    R     +A ++FDEM 
Sbjct: 162 NMVLDGLVKKGRFDTMWKVYGDMVARG-ASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMI 220

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLE 169
              +  TV  +  L+       ++   + +F+ M    + P+  +YN ++ G      ++
Sbjct: 221 EKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVK 280

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--MRVYNVKPDGQVFA 227
            A +++ EM+   L P +VTFG LI GLC   + DE +  ++ +  M  + V P+  V+ 
Sbjct: 281 KALELYXEMLGDGLLPNVVTFGILIDGLC---KTDEMVSARKFLIDMASFGVVPNIFVYN 337

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            LI G C  G LS AL +  E+ + +I  D   YS LI  L    R  E   +L+EMK++
Sbjct: 338 CLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKK 397

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G  PN+VTYN LI G+CKE + E A  +  +M +KG + N I+++ ++ G CK GK
Sbjct: 398 GFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGK 453



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 134/279 (48%), Gaps = 15/279 (5%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           ++P  + F  +I    +   +  A +   +M+SF V   +  +N L++     G L    
Sbjct: 294 LLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEAL 353

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            L   +EK+ + PD  +Y+ILI G     R+E+A  +  EM K+   P  VT+ TLI G 
Sbjct: 354 SLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGY 413

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C E  +++A+++    M    ++P+   F++LI G C  G++  A+G+  EMV   +  D
Sbjct: 414 CKEGNMEKAIEVCSQ-MTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPD 472

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL- 316
              Y++LI   FK G   E   + KEM+E G  PN  T + LI G CK+     A  +  
Sbjct: 473 VVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFL 532

Query: 317 -----DEMGDKG-------CKANPISYNVILGGLCKDGK 343
                D  G K        C  N + Y  ++ GLC DG+
Sbjct: 533 AKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGR 571



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 141/284 (49%), Gaps = 12/284 (4%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVK 119
           ++FDEM +         +I P  +I+  +I G  G +R+ E A  MF  M +  +   + 
Sbjct: 214 RLFDEMIE--------KKIFPTVVIYTILIRGLCGESRISE-AESMFRTMRNSGMLPNLY 264

Query: 120 FFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
            +NT+++       + +  EL+ +++   + P+  ++ ILI G   +  +  A K   +M
Sbjct: 265 TYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDM 324

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
               + P +  +  LI G C    + EAL L  +I + + + PD   ++ LIKGLC V  
Sbjct: 325 ASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEK-HEILPDVFTYSILIKGLCGVDR 383

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           +  A G+ +EM +     +A  Y++LI    K G   +   +  +M E+G +PN +T++ 
Sbjct: 384 MEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFST 443

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           LI G+CK    EAA  +  EM  KG   + ++Y  ++ G  KDG
Sbjct: 444 LIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDG 487



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 141/295 (47%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I  L       E + +   ++ ++ ++P    +  ++  Y +   +++AL+++ EM
Sbjct: 231 YTILIRGLCGESRISEAESMFRTMR-NSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEM 289

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
               +   V  F  L++      ++   ++    M  + V P+   YN LI G   +  L
Sbjct: 290 LGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNL 349

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A  +  E+ K  + P + T+  LI GLC   R++EA  L ++ M+     P+   + +
Sbjct: 350 SEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQE-MKKKGFLPNAVTYNT 408

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G C  G +  A+ V  +M    IE +   +S+LI    KAG+      +  EM  +G
Sbjct: 409 LIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKG 468

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             P+ V Y ALI G  K+ + + AF +  EM + G   N  + + ++ GLCKDG+
Sbjct: 469 LLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGR 523



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 136/299 (45%), Gaps = 17/299 (5%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           ++ E H + P   ++  Y ++I  L      +E   +L ++K     +P  + +  +I  
Sbjct: 357 SEIEKHEILP---DVFTYSILIKGLCGVDRMEEADGLLQEMKKKG-FLPNAVTYNTLIDG 412

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPD 151
           Y +   +E+A+++  +M+   ++  +  F+TL++     GK++    L+ +++ K + PD
Sbjct: 413 YCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPD 472

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-- 209
             +Y  LI G       ++A+++  EM +  L P + T   LI GLC + R+ +A+KL  
Sbjct: 473 VVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFL 532

Query: 210 ----------KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
                     K + +      P+  ++ +LI+GLC  G +  A     +M    +  D  
Sbjct: 533 AKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVF 592

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
               +I   F+A    +   +  ++ + G  PNS  Y  L  G+ +    ++A +   E
Sbjct: 593 TCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSALSFCGE 651



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 117/291 (40%), Gaps = 53/291 (18%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  II  L  AK++ + + ++  L    +   +  I C+V     R            E 
Sbjct: 73  YSAIIHVLTGAKLYAKARCLMRDLIQCLQKSRRSRICCSVFNVLSRL-----------ES 121

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
           S F    T   F  L+      G ++    ++  M+   +  AC  N+++ G V   R +
Sbjct: 122 SKF----TPNVFGVLIIAFSEMGLVEEALWVYYKMDVLPAMQAC--NMVLDGLVKKGRFD 175

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
             WKV+ +MV R   P +VT+G                                    +L
Sbjct: 176 TMWKVYGDMVARGASPNVVTYG------------------------------------TL 199

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           I G C  G+   A  + +EM+  KI     IY+ LI  L    R +E  ++ + M+  G 
Sbjct: 200 IDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGM 259

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            PN  TYN ++ G+CK    + A  +  EM   G   N +++ +++ GLCK
Sbjct: 260 LPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCK 310



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 5/130 (3%)

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI-EMDAGIYSSLISALFKAGR 273
           R+ + K    VF  LI     +G +  AL V  +M  D +  M A   + ++  L K GR
Sbjct: 118 RLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKM--DVLPAMQA--CNMVLDGLVKKGR 173

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +    +  +M  RG  PN VTY  LI G C++ DF  AF + DEM +K      + Y +
Sbjct: 174 FDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTI 233

Query: 334 ILGGLCKDGK 343
           ++ GLC + +
Sbjct: 234 LIRGLCGESR 243


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 142/268 (52%), Gaps = 2/268 (0%)

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           + ++ P  + + +++G Y     + +AL+++ EM+   +  ++  F TLL+     G + 
Sbjct: 465 NKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIR 524

Query: 136 RMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
              +LF  M ++ V P+  +YN++I G      +  A++  +EM+++ + P   ++  LI
Sbjct: 525 DAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLI 584

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
           +GLCL  +  EA K+  D +   N + +   +  L+ G C  G+L  AL V ++M    +
Sbjct: 585 HGLCLTGQASEA-KVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGV 643

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           ++D   Y  LI    K   +  F  +LKEM +RG KP+ V Y ++I    K  DF+ AF 
Sbjct: 644 DLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFG 703

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDG 342
           I D M ++GC  N ++Y  ++ GLCK G
Sbjct: 704 IWDLMINEGCVPNEVTYTAVINGLCKAG 731



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 153/312 (49%), Gaps = 8/312 (2%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GF 92
           D     LKP   +++ Y  ++  L + + F+   +++ ++    R  P E    +++ G 
Sbjct: 287 DLAGKELKP---DVVTYCTLVCGLCKVQEFEVGLEMIDEMLR-LRFSPSEAAVSSLVEGL 342

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPD 151
             R ++ E AL +   ++ F V   +  +N L++        D  + LF  M K  + P+
Sbjct: 343 RKRGKV-EEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPN 401

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +Y+ILI       +L+ A     EM+   L+P++  + +LI G C    +  A  L  
Sbjct: 402 DVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMA 461

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           +++    ++P    + SL+ G C+ G+++ AL +  EM    I      +++L+S LF+A
Sbjct: 462 EMIN-KKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRA 520

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G   +   +  EM E   KPN VTYN +I G+C+E +   AF  L+EM +KG   +  SY
Sbjct: 521 GLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSY 580

Query: 332 NVILGGLCKDGK 343
             ++ GLC  G+
Sbjct: 581 RPLIHGLCLTGQ 592



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 120/251 (47%), Gaps = 9/251 (3%)

Query: 101 RALQMFDEMSSFNVQMT-------VKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDA 152
           R+ ++ D +  F + MT       V+  + LL+  +         ELF  M    + PD 
Sbjct: 168 RSRRVLDGVLVFKMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDV 227

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
             Y  +I      + L  A ++  +M        +V +  LI GLC + +V EA+ +K+D
Sbjct: 228 YIYTGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKD 287

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           +     +KPD   + +L+ GLC V E  + L + +EM+R +        SSL+  L K G
Sbjct: 288 LAG-KELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRG 346

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           +  E   ++K + E G  PN   YNALI   CK  +F+ A  + D MG  G   N ++Y+
Sbjct: 347 KVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYS 406

Query: 333 VILGGLCKDGK 343
           +++   C+ GK
Sbjct: 407 ILIDMFCRRGK 417



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 123/265 (46%), Gaps = 8/265 (3%)

Query: 83  EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR---MKE 139
           EI +  ++  + R   LE AL +  +M    V + +  +  L++  L     DR   +  
Sbjct: 612 EICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLK--HKDRKVFLGL 669

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L ++ ++ + PD   Y  +I     +   ++A+ ++D M+     P  VT+  +I GLC 
Sbjct: 670 LKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCK 729

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC-AVGELSLALGVKEEMVRDKIEMDA 258
              V+EA  L    MR  N  P+   +   +  L   VG++  A+ +   +++  +  + 
Sbjct: 730 AGFVNEAEILCSK-MRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKGLLA-NT 787

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y+ LI    + GR  E   ++  M   G  P+ +TY  +IS  C+  D + A  + + 
Sbjct: 788 ATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNS 847

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M +KG + + ++YN ++ G C  G+
Sbjct: 848 MTEKGIRPDRVAYNTLIHGCCVAGE 872



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 101/234 (43%), Gaps = 14/234 (5%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           HD  + P ++I+ ++I    +    + A  ++D M +         +  ++N     G +
Sbjct: 674 HDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFV 733

Query: 135 DRMKELFQIMEKYVSPDACSYNILIHGC---VVSRRLEDAWKVFD--EMVKRRLQPTLVT 189
           +      +I+   + P     N + +GC   ++++ + D  K  +    + + L     T
Sbjct: 734 NEA----EILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKGLLANTAT 789

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYN--VKPDGQVFASLIKGLCAVGELSLALGVKE 247
           +  LI G C + R++EA +L   I R+    V PD   + ++I  LC   ++  A+ +  
Sbjct: 790 YNMLIRGFCRQGRMEEASEL---ITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWN 846

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
            M    I  D   Y++LI     AG   +   +  EM  +G KPN+ T    IS
Sbjct: 847 SMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPNTETSETTIS 900


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 154/298 (51%), Gaps = 4/298 (1%)

Query: 47  LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMF 106
           L+ Y  ++    +A   D+   ++ +LK   R  P   ++  +I    +    + A ++F
Sbjct: 192 LVTYATVVNGYCKAGRIDQALSLMRRLKGTGR-SPSGSLYSTLIDGLCKHDRHDEARELF 250

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIHGCVVS 165
            EM++ +VQ  V  + + ++     GKLD  K +  +++E   +PD  SYN++I+     
Sbjct: 251 -EMAAGDVQ-DVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKD 308

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            R+ +A ++ D+ ++R+  P +     L+ GLC   RV+EA  + E ++   +  P    
Sbjct: 309 NRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVT 368

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           ++++I GLC    L  A  V ++M R     D   Y+++I A  K GR +E   + + M 
Sbjct: 369 YSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMH 428

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           ERGC  + V YN LI G+C+    + A  +++EM  +G + N +S + I+ GLCK+ +
Sbjct: 429 ERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCKESR 486



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           FR +   Y  +I    +A+   +   +L ++K    I P  + F ++I         ++A
Sbjct: 48  FRPDDFTYGTLIRGFCKAEQIPQAVNLLGEMKA-AGITPTIVTFGSLIRKLCELNFTDKA 106

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG 161
           LQ+F +M    V+     +  ++       KLD     F+ M +    PD  +Y +L+H 
Sbjct: 107 LQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHS 166

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              + + E   ++F+EM+ +   P LVT+ T++ G C   R+D+AL L    ++     P
Sbjct: 167 LFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRR-LKGTGRSP 225

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG------IYSSLISALFKAGRKN 275
            G ++++LI GLC           + +  R+  EM AG      +Y+S IS L KAG+ +
Sbjct: 226 SGSLYSTLIDGLCKHD--------RHDEARELFEMAAGDVQDVIVYTSFISGLCKAGKLD 277

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E  A+  +M E GC P+ V+YN +I   CK+     A  ++D+  ++ C        V++
Sbjct: 278 EAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLV 337

Query: 336 GGLCK 340
            GLCK
Sbjct: 338 DGLCK 342



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 140/297 (47%), Gaps = 6/297 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            ++ +  +I KL      D+  QI HQ+  D ++ P   ++  VIG   +   L+ A   
Sbjct: 86  TIVTFGSLIRKLCELNFTDKALQIFHQMI-DMKVKPDAFLYTVVIGHLCKINKLDLAASY 144

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           F+ M           +  L++      K ++  ++F+ ++ K  SP+  +Y  +++G   
Sbjct: 145 FERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCK 204

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R++ A  +   +      P+   + TLI GLC   R DEA +L E  M   +V+ D  
Sbjct: 205 AGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEARELFE--MAAGDVQ-DVI 261

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           V+ S I GLC  G+L  A  V  +M+      D   Y+ +I +L K  R +E   ++ + 
Sbjct: 262 VYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQA 321

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA-NPISYNVILGGLCK 340
            ER C P       L+ G CK    E A  IL+ M + G +A + ++Y+ ++ GLCK
Sbjct: 322 MERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCK 378



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 1/174 (0%)

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           +A++VF + +    +P   T+GTLI G C   ++ +A+ L  + M+   + P    F SL
Sbjct: 35  EAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIPQAVNLLGE-MKAAGITPTIVTFGSL 93

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           I+ LC +     AL +  +M+  K++ DA +Y+ +I  L K  + +   +  + M + GC
Sbjct: 94  IRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGC 153

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            P+ VTY  L+    K   +E    I +EM  KG     ++Y  ++ G CK G+
Sbjct: 154 LPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGR 207



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 108/262 (41%), Gaps = 69/262 (26%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PD  +Y  LI G   + ++  A  +  EM    + PT+VTFG+LI  LC     D+AL++
Sbjct: 50  PDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQI 109

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
              ++ +  VKPD  ++  +I  LC + +L LA    E MV+     D   Y+ L+ +LF
Sbjct: 110 FHQMIDM-KVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLF 168

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTY--------------------------------- 296
           KA +  +   I +EM  +G  P  VTY                                 
Sbjct: 169 KACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGS 228

Query: 297 --NALISGFCKEEDFEAAFTI--------------------------LDE-------MGD 321
             + LI G CK +  + A  +                          LDE       M +
Sbjct: 229 LYSTLIDGLCKHDRHDEARELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIE 288

Query: 322 KGCKANPISYNVILGGLCKDGK 343
            GC  +P+SYNVI+  LCKD +
Sbjct: 289 AGCAPDPVSYNVIIYSLCKDNR 310



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 35/79 (44%)

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           +SL+      G   E   + K+      +P+  TY  LI GFCK E    A  +L EM  
Sbjct: 21  NSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIPQAVNLLGEMKA 80

Query: 322 KGCKANPISYNVILGGLCK 340
            G     +++  ++  LC+
Sbjct: 81  AGITPTIVTFGSLIRKLCE 99


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 149/299 (49%), Gaps = 6/299 (2%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D E + L P  +    Y  +I  L +++  +E + +L ++     + P  +++ N+I  +
Sbjct: 177 DMEDYGLVPDGFT---YGALINGLCKSRRSNEAKALLDEMSC-AELKPNVVVYANLIDGF 232

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDA 152
            R    + A +M  EM +  VQ     ++ L+      G++DR   L  Q++     PD 
Sbjct: 233 MREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDT 292

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN++I G       +DA+++  EM    + P + T+  +I+GLC     ++A  L E+
Sbjct: 293 ITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEE 352

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M    +KP+  V+A LI G C  G +SLA  + ++M +  +  D   Y+SLI  L K G
Sbjct: 353 -MTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVG 411

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           R  E      +M+ERG  PN  TY+ LI G+ K  D E+A  ++  M D G K N + Y
Sbjct: 412 RVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIY 470



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 2/265 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P    +  +I  Y + R  + A ++  EM      +    +N L+      G ++   
Sbjct: 113 ISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAF 172

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
              + ME Y + PD  +Y  LI+G   SRR  +A  + DEM    L+P +V +  LI G 
Sbjct: 173 GFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGF 232

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
             E   DEA K+ ++ M    V+P+   + +L++GLC +G++  A  + ++MVRD    D
Sbjct: 233 MREGNADEAFKMIKE-MVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPD 291

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+ +I   F+   K +   +L EM+  G  PN  TY+ +I G C+  + E A  +L+
Sbjct: 292 TITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLE 351

Query: 318 EMGDKGCKANPISYNVILGGLCKDG 342
           EM  KG K N   Y  ++ G C++G
Sbjct: 352 EMTTKGLKPNAFVYAPLISGYCREG 376



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 146/300 (48%), Gaps = 7/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y ++I  L ++   ++   +L ++     + P   ++  +I  Y R   +  A ++
Sbjct: 326 NVYTYSIMIHGLCQSGEPEKASDLLEEMT-TKGLKPNAFVYAPLISGYCREGNVSLACEI 384

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           FD+M+  NV   +  +N+L+      G+++   + F Q+ E+ + P+  +Y+ LIHG + 
Sbjct: 385 FDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLK 444

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--MRVYNVKPD 222
           +  LE A ++   M+   L+P  V +  L+       + D+  K+      M    V  D
Sbjct: 445 NGDLESAEQLVQRMLDTGLKPNDVIYIDLLESY---FKSDDIEKVSSTFKSMLDQGVMLD 501

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
            +++  LI  L + G +  A  V  E+ ++    D  +YSSLIS L K   + +   IL 
Sbjct: 502 NRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILD 561

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           EM ++G  PN V YNALI G CK  D   A  + + +  KG   N ++Y  ++ G CK G
Sbjct: 562 EMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVG 621



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 2/250 (0%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDAC 153
           RA  +    ++ + M    +   V  ++TL+       + D  K+ L ++ E+    +  
Sbjct: 94  RADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTV 153

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN+LI G   S  +E+A+    +M    L P   T+G LI GLC   R +EA  L ++ 
Sbjct: 154 TYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDE- 212

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M    +KP+  V+A+LI G    G    A  + +EMV   ++ +   Y +L+  L K G+
Sbjct: 213 MSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQ 272

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +    +LK+M     +P+++TYN +I G  +  + + AF +L EM + G   N  +Y++
Sbjct: 273 MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSI 332

Query: 334 ILGGLCKDGK 343
           ++ GLC+ G+
Sbjct: 333 MIHGLCQSGE 342



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 2/224 (0%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
            + L++     G++    E+  +M ++ ++P     N L+   + +  +   WKV + MV
Sbjct: 50  LDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMV 109

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
              + P + T+ TLI   C     D A K+  + MR      +   +  LI GLC  G +
Sbjct: 110 GAGISPDVYTYSTLIEAYCKVREFDTAKKVLVE-MRERGCGLNTVTYNVLIAGLCRSGAV 168

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A G K++M    +  D   Y +LI+ L K+ R NE  A+L EM     KPN V Y  L
Sbjct: 169 EEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANL 228

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I GF +E + + AF ++ EM   G + N I+Y+ ++ GLCK G+
Sbjct: 229 IDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQ 272



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 140/304 (46%), Gaps = 17/304 (5%)

Query: 45  YNLLHYDLIITKLGR----AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           YN L + L  +K+GR     K F +MQ+          ++P E  +  +I  Y +   LE
Sbjct: 400 YNSLIFGL--SKVGRVEESTKYFAQMQE--------RGLLPNEFTYSGLIHGYLKNGDLE 449

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            A Q+   M    ++     +  LL        ++++   F+ M ++ V  D   Y ILI
Sbjct: 450 SAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILI 509

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           H    S  +E A++V  E+ K    P +  + +LI GLC     ++A  + ++ M    V
Sbjct: 510 HNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDE-MSKKGV 568

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   + +LI GLC  G++S A  V   ++   +  +   Y+SLI    K G  +    
Sbjct: 569 DPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFY 628

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +  EM   G  P++  Y+ L +G     D E A  +++EM  +G  A+  S+N ++ G C
Sbjct: 629 LYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFC 687

Query: 340 KDGK 343
           K GK
Sbjct: 688 KRGK 691



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 133/314 (42%), Gaps = 36/314 (11%)

Query: 65  EMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124
           E  + L Q   DT + P ++I+ +++  Y ++  +E+    F  M    V +  + +  L
Sbjct: 449 ESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGIL 508

Query: 125 LNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
           ++   + G ++    +   +EK  S PD   Y+ LI G   +   E A+ + DEM K+ +
Sbjct: 509 IHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGV 568

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P +V +  LI GLC    +  A  +   I+    + P+   + SLI G C VG++S A 
Sbjct: 569 DPNIVCYNALIDGLCKSGDISYARNVFNSIL-AKGLVPNCVTYTSLIDGSCKVGDISNAF 627

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG--------------C 289
            +  EM+   I  DA +YS L +    AG   +   +++EM  RG              C
Sbjct: 628 YLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFC 687

Query: 290 K--------------------PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           K                    PN++T   +ISG  +        TI  E+  K  ++   
Sbjct: 688 KRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAAR 747

Query: 330 SYNVILGGLCKDGK 343
            ++ +   +   GK
Sbjct: 748 HFSSLFMDMINQGK 761



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 137/313 (43%), Gaps = 22/313 (7%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I  L  +   +   ++L +++ +   VP   ++ ++I    +    E+A  + DEM
Sbjct: 505 YGILIHNLSSSGNMEAAFRVLSEIEKNGS-VPDVHVYSSLISGLCKTADREKAFGILDEM 563

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
           S   V   +  +N L++     G +   + +F  I+ K + P+  +Y  LI G      +
Sbjct: 564 SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDI 623

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A+ +++EM+   + P    +  L  G      +++A+ L E++    +       F +
Sbjct: 624 SNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISS--FNN 681

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ G C  G++   L +   ++   +  +A    ++IS L +AG+ +E   I  E++++ 
Sbjct: 682 LVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKT 741

Query: 289 CKPNSVTYNAL------------------ISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            +  +  +++L                  I   CKE + + A  + D +  K       S
Sbjct: 742 SESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSS 801

Query: 331 YNVILGGLCKDGK 343
           Y  I+  LC+ GK
Sbjct: 802 YLAIVDNLCRKGK 814


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 158/304 (51%), Gaps = 3/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  N +  + +I  L  A   +E  ++L ++  +  +V   I +  +I    +   +E
Sbjct: 436 KGFAANTVTSNALIHGLCEAGSKEEAAKLLKEML-ERGLVLDSISYNTLILACCKEGKVE 494

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILI 159
              ++ +EM    +Q  +  +N LL+     GK++    L+   +K  + PDA +Y I+I
Sbjct: 495 EGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMI 554

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G   + R+E+  K+F EMV  +++   V +GTLI   C    + EA +L++D MR   +
Sbjct: 555 DGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDD-MRSRGI 613

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
                 ++SLI GL  +G +  A  + +EM ++ +  +   Y++LI    K G+ ++  +
Sbjct: 614 PQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDS 673

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           IL+EM      PN +TY  +I+G CK  + +AA  +L+EM  KG   + ++YN +  G C
Sbjct: 674 ILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFC 733

Query: 340 KDGK 343
           K+GK
Sbjct: 734 KEGK 737



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/251 (33%), Positives = 142/251 (56%), Gaps = 4/251 (1%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDAC 153
           +A  ++ + Q+FD M    V   V  F+T++N   T G++D   ELF+ MEK  V+P+  
Sbjct: 174 KANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVV 233

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA-LKLKED 212
           +YN +IHG   + RL++A++  ++M K R++P+LVT+G LI GL    R DEA   LKE 
Sbjct: 234 TYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEM 293

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
             R Y   P+  V+ +LI G C +G +S AL ++++M+ + I  ++   +SLI    K+ 
Sbjct: 294 SDRGY--APNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSN 351

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           +      +L+EM   G   N  T+ ++I   C +  F++A   + EM  +  K N     
Sbjct: 352 QMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLT 411

Query: 333 VILGGLCKDGK 343
           +++ GLC++GK
Sbjct: 412 LLVSGLCQNGK 422



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 145/308 (47%), Gaps = 39/308 (12%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           E   +KP   +L+ Y ++I  L + + FDE   IL ++  D    P  +++  +I  Y R
Sbjct: 259 EKERVKP---SLVTYGVLINGLVKLERFDEANCILKEMS-DRGYAPNNVVYNTLIDGYCR 314

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSY 155
              +  ALQ+ D+M S                                    +SP++ + 
Sbjct: 315 IGNISTALQIRDDMIS----------------------------------NGISPNSVTC 340

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N LI G   S ++E A  + +EM+         TF ++I+ LCL+ R D AL    + M 
Sbjct: 341 NSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIME-ML 399

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
           + N KP+  +   L+ GLC  G+ S A+ +   ++      +    ++LI  L +AG K 
Sbjct: 400 LRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKE 459

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E   +LKEM ERG   +S++YN LI   CKE   E  F + +EM  +G + +  +YN++L
Sbjct: 460 EAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLL 519

Query: 336 GGLCKDGK 343
            GLC  GK
Sbjct: 520 HGLCNMGK 527



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 110/206 (53%), Gaps = 2/206 (0%)

Query: 139 ELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           ELF ++  K + P   + N L+   V +  ++ +++VFD M    + P +  F T++   
Sbjct: 148 ELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAF 207

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C   RVD+A++L   + +V  V P+   + ++I GLC  G L  A   KE+M +++++  
Sbjct: 208 CTGGRVDDAIELFRKMEKV-GVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPS 266

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y  LI+ L K  R +E   ILKEM +RG  PN+V YN LI G+C+  +   A  I D
Sbjct: 267 LVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRD 326

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
           +M   G   N ++ N ++ G CK  +
Sbjct: 327 DMISNGISPNSVTCNSLIQGYCKSNQ 352



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 149/329 (45%), Gaps = 38/329 (11%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS 110
           + +++ L +A       Q+   + H   + P   +F  ++  +     ++ A+++F +M 
Sbjct: 166 NFLLSSLVKANEVKMSYQVFDIMCH-CGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKME 224

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVVSRRLE 169
              V   V  +N +++     G+LD   +  + MEK  V P   +Y +LI+G V   R +
Sbjct: 225 KVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFD 284

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           +A  +  EM  R   P  V + TLI G C    +  AL++++D++    + P+     SL
Sbjct: 285 EANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMIS-NGISPNSVTCNSL 343

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS-------------------------- 263
           I+G C   ++  A  + EEM+     ++ G ++S                          
Sbjct: 344 IQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNF 403

Query: 264 ---------LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
                    L+S L + G+++E   +   + E+G   N+VT NALI G C+    E A  
Sbjct: 404 KPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAK 463

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +L EM ++G   + ISYN ++   CK+GK
Sbjct: 464 LLKEMLERGLVLDSISYNTLILACCKEGK 492



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 3/222 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I    +A   +E +++  ++    +I    +++  +I  Y     +  A ++ D+M
Sbjct: 550 YGIMIDGYCKANRVEEGEKLFQEMV-TMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDM 608

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
            S  +  T   +++L++     G +D   +L   M K  +SP+   Y  LI G     ++
Sbjct: 609 RSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQM 668

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
                +  EM    + P  +T+  +I G C    +  A KL  + M    + PD   + +
Sbjct: 669 HKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNE-MAQKGIVPDAVTYNA 727

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
           L  G C  G++  AL V + M    I +D   Y++LI    K
Sbjct: 728 LTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLIDGWHK 769


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 153/305 (50%), Gaps = 8/305 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT-RIVPKEIIFCNVIGFYGRARLLERALQ 104
           N++ Y+  +  L +  M  E  +++  L+  + R+ P  + F  +I    +   ++ A  
Sbjct: 143 NIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACS 202

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
           +FD+M +      V  +N L+N      K++R   + + M +K V+PD  +Y++L+    
Sbjct: 203 VFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFC 262

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTL-----VTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
            + R+++A ++   M  R   P +     VTF  LI G C     ++A  L E+ M   N
Sbjct: 263 KASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEE-MVAKN 321

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           ++PD   F +LI GLC  G++  A  + + M    +  +   Y++L+  L K+GR  E  
Sbjct: 322 LQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEAC 381

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             L+EM   GC P+S+TY +L+   C+    + A  ++ E+   G   + ++YN+++ GL
Sbjct: 382 QFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGL 441

Query: 339 CKDGK 343
            K GK
Sbjct: 442 WKSGK 446



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 139/294 (47%), Gaps = 45/294 (15%)

Query: 95  RARLLERALQMF-DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDA 152
           RA    RAL++F  EM+   V  T+  +NT++N       L    ELF+ ++E+   PD 
Sbjct: 13  RAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDV 72

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN LI     +  LE+A ++  +M  R   P +VT+  LI GLC   R+DEA +L ++
Sbjct: 73  VTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQE 132

Query: 213 IMR----------VYN----------------------------VKPDGQVFASLIKGLC 234
           + R           YN                            V PD   F++LI GLC
Sbjct: 133 MTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLC 192

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
             G++  A  V ++M+      +   Y++L++ L KA +     A+++ M ++G  P+ +
Sbjct: 193 KCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVI 252

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKAN-----PISYNVILGGLCKDGK 343
           TY+ L+  FCK    + A  +L  M  +GC  N      +++N+++ G CK G 
Sbjct: 253 TYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGN 306



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 138/265 (52%), Gaps = 6/265 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHD----TRIVPKEIIFCNVIGFYGRARLLER 101
           +++ Y +++    +A   DE  ++LH +         +VP ++ F  +I    +A   E+
Sbjct: 250 DVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQ 309

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIH 160
           A  +F+EM + N+Q  V  F  L++     G+++  +++  +M    V P+  +YN L+H
Sbjct: 310 ASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVH 369

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G   S R+E+A +  +EMV     P  +T+G+L+Y LC   R D+AL+L  + ++ +   
Sbjct: 370 GLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSE-LKSFGWD 428

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   +  L+ GL   G+   A+ V EEMV    + D+  +++  S L ++G       +
Sbjct: 429 PDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMEL 488

Query: 281 LKEMKERGCKPNSVTYNALISGFCK 305
           L+ +  +G  P++ T ++++   C+
Sbjct: 489 LRVVLAKGMLPDATTCSSILDWVCR 513



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 75/153 (49%), Gaps = 2/153 (1%)

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           +  ++  LC       AL++    M    V P    + ++I GLC   +L   + + EE+
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           V      D   Y++LI +L KAG   E   +  +M  RGC PN VTY+ LI+G CK    
Sbjct: 64  VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRI 123

Query: 310 EAAFTILDEMGDKGCKANP--ISYNVILGGLCK 340
           + A  ++ EM  K C   P  I+YN  L GLCK
Sbjct: 124 DEARELIQEMTRKSCDVLPNIITYNSFLDGLCK 156



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 1/116 (0%)

Query: 229 LIKGLCAVGELSLALGV-KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +++ LC  G+ + AL + + EM RD +      Y+++I+ L K+        + +E+ ER
Sbjct: 7   VLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVER 66

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G  P+ VTYN LI   CK  D E A  +  +M  +GC  N ++Y+V++ GLCK G+
Sbjct: 67  GHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGR 122


>gi|147778708|emb|CAN60667.1| hypothetical protein VITISV_028261 [Vitis vinifera]
          Length = 393

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 157/312 (50%), Gaps = 7/312 (2%)

Query: 18  PKLALQLF---KNPNP-NPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL 73
           P+  L++F   +NP    P        K F+ N   Y L+I KL +A+MFD ++ ++  L
Sbjct: 52  PREVLKIFDGLRNPESVMPVLDSVCKRKDFKPNEALYTLVINKLAQARMFDAIEDVIKTL 111

Query: 74  KHDTRIVPKEIIFCNVIGFYGR-ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132
           K D +    ++ F NVI  YG  A   +RA++   +M  F+   +VK FN +LN  ++  
Sbjct: 112 KIDKQCRLSDVFFYNVIKVYGNVAGRPDRAVETLFDMPKFHCWPSVKTFNLVLNMLVSAK 171

Query: 133 KLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           + D + +++    E  V  DAC  NIL+ G   S  ++ A ++ DE  K+R +P + TF 
Sbjct: 172 RFDVVHKVYAGAPELGVEIDACCLNILVKGLCRSGNVDAACELLDEYPKQRCRPNVRTFS 231

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           TL++GLC   RV+ AL L E + R   V PD  VF  LI GL   G +   + +   M  
Sbjct: 232 TLMHGLCESGRVEGALGLLERMER-EGVYPDTVVFNILISGLRKRGRVEEGMELLGRMKL 290

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
                +AG Y  ++  +   GR  +    + +M + G  P+ V+Y  +I G CKE     
Sbjct: 291 KGCYPNAGSYQEVLYGVLDTGRFGKAKEFMCQMIDEGVSPSFVSYKMVIYGLCKENLVAD 350

Query: 312 AFTILDEMGDKG 323
              IL +M ++G
Sbjct: 351 VVWILKQMVEQG 362


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 154/305 (50%), Gaps = 6/305 (1%)

Query: 43  FRYNLLHYDLIIT---KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           F  N++ Y+ +I    K G A        IL ++  + +I P EI F  +I  + +   +
Sbjct: 231 FSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLAN-KICPNEITFNTLIDGFCKDENV 289

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
             A   F+EM    ++  +  +N+L+N     GKLD    L+  M    + P+  ++N L
Sbjct: 290 LAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNAL 349

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G    + +++A K+FD++ ++ L P  +TF T+I   C    ++E   L   ++    
Sbjct: 350 INGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLD-EG 408

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + P+   +  LI GLC    +  A  +  EM   +++ D   Y+ LI    K G  ++  
Sbjct: 409 IFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAE 468

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +L EM   G KPN VTYN L+ G+C E + +AA  +  +M  +G +AN ++YNV++ G 
Sbjct: 469 KLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGF 528

Query: 339 CKDGK 343
           CK GK
Sbjct: 529 CKTGK 533



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 136/278 (48%), Gaps = 40/278 (14%)

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG-- 161
           ++ EM    +Q  +  FN  +N     GKL++ +++ + ++ +  SP+  +YN LI G  
Sbjct: 187 VYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHC 246

Query: 162 ------------CVVSRRLED------------------------AWKVFDEMVKRRLQP 185
                        ++   L +                        A   F+EM ++ L+P
Sbjct: 247 KKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKP 306

Query: 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
            +VT+ +LI GL    ++DEA+ L  D M    +KP+   F +LI G C    +  A  +
Sbjct: 307 NIVTYNSLINGLSNNGKLDEAIAL-WDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKL 365

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
            +++    +  +A  ++++I A  KAG   E  A+   M + G  PN  TYN LI+G C+
Sbjct: 366 FDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCR 425

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ++  AA  +L+EM +   KA+ ++YN+++GG CKDG+
Sbjct: 426 NQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGE 463



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 113/212 (53%), Gaps = 17/212 (8%)

Query: 139 ELFQIMEKY---VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
           E+F+ ++ Y   +S ++C  N L+   V      +   V+ EM+KRR+QP L TF   I 
Sbjct: 151 EVFRRVQDYGFKLSLNSC--NPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFIN 208

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC---AVGELSLALGVKEEMVRD 252
           GLC   ++++A  + EDI + +   P+   + +LI G C   + G++  A  + +EM+ +
Sbjct: 209 GLCKAGKLNKAEDVIEDI-KAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLAN 267

Query: 253 KIEMDAGIYSSLISALFK----AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           KI  +   +++LI    K       KN F    +EM+ +G KPN VTYN+LI+G      
Sbjct: 268 KICPNEITFNTLIDGFCKDENVLAAKNAF----EEMQRQGLKPNIVTYNSLINGLSNNGK 323

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            + A  + D+M   G K N +++N ++ G CK
Sbjct: 324 LDEAIALWDKMVGLGLKPNIVTFNALINGFCK 355



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 6/223 (2%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP   N++ ++ +I    + KM  E +++   +  +  +VP  I F  +I  + +A ++
Sbjct: 339 LKP---NIVTFNALINGFCKKKMIKEARKLFDDIA-EQDLVPNAITFNTMIDAFCKAGMM 394

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
           E    + + M    +   V  +N L+        +   K+L   ME Y +  D  +YNIL
Sbjct: 395 EEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNIL 454

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G         A K+  EM+   ++P  VT+ TL+ G C+E  +  ALK++   M    
Sbjct: 455 IGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQ-MEKEG 513

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
            + +   +  LIKG C  G+L  A  +  EM+   +  +   Y
Sbjct: 514 KRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTY 556



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 69/121 (57%), Gaps = 9/121 (7%)

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           + ++L+KG    GE+     V +EM++ +I+ +   ++  I+ L KAG+ N+   +++++
Sbjct: 171 LLSALVKG-NETGEMQY---VYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDI 226

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAF---TILDEM-GDKGCKANPISYNVILGGLCK 340
           K  G  PN VTYN LI G CK+      +    IL EM  +K C  N I++N ++ G CK
Sbjct: 227 KAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKIC-PNEITFNTLIDGFCK 285

Query: 341 D 341
           D
Sbjct: 286 D 286



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%)

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           L+SAL K     E   + KEM +R  +PN  T+N  I+G CK      A  +++++   G
Sbjct: 171 LLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWG 230

Query: 324 CKANPISYNVILGGLCKDG 342
              N ++YN ++ G CK G
Sbjct: 231 FSPNIVTYNTLIDGHCKKG 249


>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 733

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 165/333 (49%), Gaps = 15/333 (4%)

Query: 13  RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ 72
           +LQ D ++AL+ F   +             +R++ + Y  ++  L + K+    +++L +
Sbjct: 109 QLQTDERVALRFFYWADRQWR---------YRHDPIVYYAMLEILSKTKLCQGAKRVL-R 158

Query: 73  LKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132
           L    RI  +   F  V+  Y RA  L  A+++   M    ++  +   NT ++  +   
Sbjct: 159 LMAKRRIERRPEAFGYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGN 218

Query: 133 KLD---RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
           +LD   R  E  QI+E  + P+  +YN LI G     RLEDA ++  EM  +   P  ++
Sbjct: 219 RLDKAVRFLERMQIVE--IEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKIS 276

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           + T++  LC E R+ E   L E +++  N+ PD   + + +  L   G    AL    E 
Sbjct: 277 YYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREA 336

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
              +  +D   YS+++ +  + GR ++   I+ EM  +GC P+ VTY ++I+G C+E   
Sbjct: 337 EERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKV 396

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + A  +L +M   GCK N +SY  +L GLCK+G
Sbjct: 397 DQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNG 429



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 142/307 (46%), Gaps = 13/307 (4%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + FR + + Y  I+    R    D+ ++I++++      +P  + + +VI    + R ++
Sbjct: 339 RRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEM-FSKGCIPDVVTYTSVINGLCQERKVD 397

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILI 159
           +A +M  +M     +     +  LLN     G     +E+  + E+ +  P+A +Y++L+
Sbjct: 398 QAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLM 457

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR---V 216
           HG     +  +A  +  EM+K+   PT V    LI  LC E +VDEA +  E  +     
Sbjct: 458 HGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCA 517

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
            NV      F ++I G C   +L  AL + ++M       D   Y+++I AL K GR  E
Sbjct: 518 VNVVN----FTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEE 573

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM-GDKGCKANPISYNVIL 335
              +  +M   G  P  VTY  +I  +C+    E    +L++M   + C+    +YN ++
Sbjct: 574 ATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRT---AYNQVI 630

Query: 336 GGLCKDG 342
             LC  G
Sbjct: 631 EKLCSFG 637



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 146/309 (47%), Gaps = 8/309 (2%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           P K    + + Y  ++  L + K   E++ ++ ++  D+ ++P ++ +   +    +   
Sbjct: 266 PFKGCSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGH 325

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
            + AL+   E      ++    ++ +++     G++D+ KE+  ++  K   PD  +Y  
Sbjct: 326 GDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTS 385

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL---ELRVDEALKLKEDIM 214
           +I+G    R+++ A K+  +M K   +P  V++  L+ GLC     L   E + + E+  
Sbjct: 386 VINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDW 445

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
            +    P+   ++ L+ G    G+ S A  +  EM++          + LI +L +  + 
Sbjct: 446 WI----PNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKV 501

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +E    +++    GC  N V +  +I GFC+++D EAA ++LD+M       + ++Y  I
Sbjct: 502 DEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTI 561

Query: 335 LGGLCKDGK 343
           +  L K G+
Sbjct: 562 IDALGKKGR 570



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 6/145 (4%)

Query: 131 CGKLDRMKELFQIMEKYVS---PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
           C K D    L  + + Y+S   PD  +Y  +I       R+E+A K+  +M++  L PT 
Sbjct: 531 CQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTP 590

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           VT+ T+I+  C   RV++ LKL E ++     +     +  +I+ LC+ G L  A  +  
Sbjct: 591 VTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRT---AYNQVIEKLCSFGNLEQAYKLLG 647

Query: 248 EMVRDKIEMDAGIYSSLISALFKAG 272
           +++R   ++DA     LI +    G
Sbjct: 648 KVLRTASKIDANTCHMLIESYLSKG 672


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 147/300 (49%), Gaps = 38/300 (12%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKE 139
           P  + +  +I    +   ++ ALQ+  +M     +     ++T+++  L  G++ D +  
Sbjct: 541 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVV 600

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L Q+ +    PDA +YN LI G    +RL +A  +  EM++    P++VT+ TL +GLC 
Sbjct: 601 LRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCR 660

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R DEA+++  D M      P+   ++S++ GLC  G ++ ALG  E+M RD++     
Sbjct: 661 SGRFDEAVEIL-DYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHV 719

Query: 260 I-YSSLISALFKAGRKNEFPAILKEM---------------------------------- 284
           I YS+LI  L KAGR +E    L+ M                                  
Sbjct: 720 IAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCG 779

Query: 285 -KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             ERGCK +   YNA+I+ +C + +F AA+ +L+EM   G   N +++ +++  LC + +
Sbjct: 780 MAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDR 839



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 153/320 (47%), Gaps = 23/320 (7%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ +  +I  L  A   ++  ++  ++     I P    +  ++    +A    R  Q 
Sbjct: 380 NVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQC 439

Query: 106 FDEM--------SSFNVQM-------------TVKFFNTLLNPKLTCGKLDRMKELFQIM 144
           F++M        SS+ +               T+  +NTL+      G +     L + M
Sbjct: 440 FEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFM 499

Query: 145 -EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
            E  +SPD  ++N ++ G    +R+ DA  VF   ++R  +P +VT+ TLI GL    ++
Sbjct: 500 IESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKM 559

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
           DEAL+L   ++ +   + +   +++++ GL  VG +  A+ V  +M       DA  Y++
Sbjct: 560 DEALQLLAKMVEL-GCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNT 618

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LI   FK  R  E   +L+EM E G  P+ VTY  L  G C+   F+ A  ILD M  +G
Sbjct: 619 LIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARG 678

Query: 324 CKANPISYNVILGGLCKDGK 343
           C  N I+Y+ I+ GLCK G+
Sbjct: 679 CAPNAITYSSIVDGLCKAGR 698



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 154/329 (46%), Gaps = 33/329 (10%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  +  +  +  ++  L +A   +E  Q+L  +      VP  + F +++    +AR ++
Sbjct: 272 KNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMP----CVPNVVCFNSLMNGLCQARRVD 327

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-----KYVSPDACSY 155
            A ++FD M        V  +N LL  K  C KL R+ E ++ +E     +  SP+  ++
Sbjct: 328 EAFELFDVMKESGCSADVITYNILL--KGLC-KLRRIPEAYRHVELMRRTEGCSPNVVTF 384

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVK-RRLQPTLVTFGTLIYGLC---------------- 198
           + LI G   + R+  AW+V++ MV    + P   T+  L+ GLC                
Sbjct: 385 STLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQML 444

Query: 199 -LELRVDEALKLKE---DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
             E R   +  +     D + V   +P    + +L+ GL   G +  ALG+ E M+   +
Sbjct: 445 EREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGL 504

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
             D   ++S++  L K  R  +   + K   ERGC+PN VTY+ LI G  K    + A  
Sbjct: 505 SPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQ 564

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +L +M + GC+AN ++Y+ ++ GL K G+
Sbjct: 565 LLAKMVELGCRANTVTYSTVVDGLLKVGR 593



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 153/356 (42%), Gaps = 53/356 (14%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           L  F  + + Y+ ++  L +A   +    +L QL  ++   P    F   +    +A  L
Sbjct: 169 LIGFTPDAVTYNTMVDGLYKAGRLEAAGMVL-QLLAESFSSPTVFTFTIAVDGLSKAGNL 227

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD------------------------ 135
             A + FD M    V      ++ L++     GKLD                        
Sbjct: 228 TGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHG 287

Query: 136 -----RMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
                R++E  Q+++     P+   +N L++G   +RR+++A+++FD M +      ++T
Sbjct: 288 LCQAHRLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVIT 347

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           +  L+ GLC   R+ EA +  E + R     P+   F++LI+GLC  G ++ A  V E M
Sbjct: 348 YNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERM 407

Query: 250 VR-DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG-------------------- 288
           V  + I  +   Y+ L+  L KAG         ++M ER                     
Sbjct: 408 VAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQ 467

Query: 289 -CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            C+P  VTYN L++G  K      A  +L+ M + G   + I++N +L GLCK+ +
Sbjct: 468 VCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQR 523



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 122/243 (50%), Gaps = 2/243 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIH 160
           A   F +   F  + TV  ++T+++      ++D+  +L + M  +  +P+A +YN L++
Sbjct: 20  AFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVN 79

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
             +   R ++A+ + + M      P L+TFG +I GLC E  ++ A ++ ++++    V 
Sbjct: 80  ALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFV- 138

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD ++   L+  LC +G +  A    ++++      DA  Y++++  L+KAGR      +
Sbjct: 139 PDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMV 198

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L+ + E    P   T+   + G  K  +   A+   D M   G   N ++Y+ ++ GLCK
Sbjct: 199 LQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCK 258

Query: 341 DGK 343
            GK
Sbjct: 259 AGK 261



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 137/299 (45%), Gaps = 14/299 (4%)

Query: 47  LLHYDLIITKLGRA-KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++ Y+++I  L +A ++ D        ++   R  P  + +  VI    R   +++  ++
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFR--PTVVTYSTVIDGLCRDNEVDKGCKL 58

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHG 161
            +EM+          +NTL+N  L  G   R KE F ++E+  +    P+  ++ ++I G
Sbjct: 59  LEEMAGRGCAPNAVTYNTLVNALLGQG---RAKEAFSLLERMAANGCPPELITFGLIIKG 115

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 +E A++V DEMV R   P +     L++ LC   RVDEA    + ++ +    P
Sbjct: 116 LCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLI-GFTP 174

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +++ GL   G L  A  V + +           ++  +  L KAG         
Sbjct: 175 DAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFF 234

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             M + G  PN+VTY+ALI G CK    + A  +L    DK  +A   +++ +L GLC+
Sbjct: 235 DSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLR---DKNSQAGMFAFSSLLHGLCQ 290



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 128/299 (42%), Gaps = 4/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y  I+  L +A    E      ++  D  + P  I +  +I    +A  ++ A + 
Sbjct: 682 NAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEF 741

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            + M        V  F+ L+N     G++D   ELF  M E+    D  +YN +I+   +
Sbjct: 742 LERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCL 801

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
                 A+ + +EM    +    VT G +I  LC   R+DEA+     I        D  
Sbjct: 802 KGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCR---DEI 858

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI  L A      AL +   MV D    DA  Y +++  LFKAG       +L+EM
Sbjct: 859 SYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEM 918

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + RG  P+  TY  +ISG  K +    A    +EM  K  K + I Y+ ++   CK  K
Sbjct: 919 RSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADK 977



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
           +VT+  LI GLC   RV +A       ++ +  +P    ++++I GLC   E+     + 
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQ-FGFRPTVVTYSTVIDGLCRDNEVDKGCKLL 59

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           EEM       +A  Y++L++AL   GR  E  ++L+ M   GC P  +T+  +I G CKE
Sbjct: 60  EEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKE 119

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + EAAF ++DEM D+G   +   + V+L  LC+ G+
Sbjct: 120 GEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGR 156



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 134/314 (42%), Gaps = 39/314 (12%)

Query: 46   NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            +++ Y  +I  L +A   DE  + L ++    RI P  + F  +I     A  ++  L++
Sbjct: 718  HVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRI-PDVVTFSILINGLCDAGRIDTGLEL 776

Query: 106  FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY------------------ 147
            F  M+    +  +  +N ++N     G+      L + M+ +                  
Sbjct: 777  FCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCG 836

Query: 148  -------VS-----PDAC----SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
                   VS     P+ C    SYN LI   V SRR E A ++   MV     P    + 
Sbjct: 837  NDRIDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYM 896

Query: 192  TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
            T++ GL      + A KL ++ MR     PD + +  +I GL    +L LA    EEM+R
Sbjct: 897  TVMDGLFKAGSPEVAAKLLQE-MRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLR 955

Query: 252  DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
              ++ DA +YSSLI A  KA + ++     K ++  G +P    Y+ ++   CK    + 
Sbjct: 956  KNLKPDAIVYSSLIDAFCKADKVDD---AWKLLRSSGIEPTITMYSTMVDSLCKNRGTDK 1012

Query: 312  AFTILDEMGDKGCK 325
            A  ++ EM  K C+
Sbjct: 1013 ALEVIREMKSKNCE 1026



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 112/241 (46%), Gaps = 8/241 (3%)

Query: 46   NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            N + + ++I  L      DE     H +  D R    EI +  +I     +R  E+AL++
Sbjct: 823  NTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCR---DEISYNTLITSLVASRRSEQALEL 879

Query: 106  FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
               M +         + T+++     G  +   +L Q M  +  SPD  +Y I+I G   
Sbjct: 880  LRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSK 939

Query: 165  SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            +++L  A   F+EM+++ L+P  + + +LI   C   +VD+A KL    +R   ++P   
Sbjct: 940  AKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKL----LRSSGIEPTIT 995

Query: 225  VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++++++  LC       AL V  EM     E    I++SL +A    GR +E   ++ ++
Sbjct: 996  MYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAEGRVDEAVKLVNDL 1055

Query: 285  K 285
            +
Sbjct: 1056 Q 1056


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 151/296 (51%), Gaps = 7/296 (2%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS 110
           ++++  L +   FD M ++   +       P  + +  +I    R     +A ++FDEM 
Sbjct: 162 NMVLDGLVKKGRFDTMWKVYGDMVARGA-SPNVVTYGTLIDGCCRQGDFLKAFRLFDEMI 220

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLE 169
              +  TV  +  L+       ++   + +F+ M    + P+  +YN ++ G      ++
Sbjct: 221 EKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVK 280

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--MRVYNVKPDGQVFA 227
            A +++ EM+   L P +VTFG LI GLC   + DE +  ++ +  M  + V P+  V+ 
Sbjct: 281 KALELYQEMLGDGLLPNVVTFGILIDGLC---KTDEMVSARKFLIDMASFGVVPNIFVYN 337

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            LI G C  G LS AL +  E+ + +I  D   YS LI  L    R  E   +L+EMK++
Sbjct: 338 CLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKK 397

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G  PN+VTYN LI G+CKE + E A  +  +M +KG + N I+++ ++ G CK GK
Sbjct: 398 GFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGK 453



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 147/312 (47%), Gaps = 16/312 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL  Y+ ++    +     +  ++  ++  D  ++P  + F  +I    +   +  A + 
Sbjct: 262 NLYTYNTMMDGYCKIAHVKKALELYQEMLGDG-LLPNVVTFGILIDGLCKTDEMVSARKF 320

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
             +M+SF V   +  +N L++     G L     L   +EK+ + PD  +Y+ILI G   
Sbjct: 321 LIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCG 380

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R+E+A  +  EM K+   P  VT+ TLI G C E  +++A+++    M    ++P+  
Sbjct: 381 VDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQ-MTEKGIEPNII 439

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F++LI G C  G++  A+G+  EMV   +  D   Y++LI   FK G   E   + KEM
Sbjct: 440 TFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEM 499

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTIL------DEMGDKG-------CKANPISY 331
           +E G  PN  T + LI G CK+     A  +       D  G K        C  N + Y
Sbjct: 500 QEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMY 559

Query: 332 NVILGGLCKDGK 343
             ++ GLC DG+
Sbjct: 560 TALIQGLCTDGR 571



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 141/284 (49%), Gaps = 12/284 (4%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVK 119
           ++FDEM +         +I P  +I+  +I G  G +R+ E A  MF  M +  +   + 
Sbjct: 214 RLFDEMIE--------KKIFPTVVIYTILIRGLCGESRISE-AESMFRTMRNSGMLPNLY 264

Query: 120 FFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
            +NT+++       + +  EL+Q ++   + P+  ++ ILI G   +  +  A K   +M
Sbjct: 265 TYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDM 324

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
               + P +  +  LI G C    + EAL L  +I + + + PD   ++ LIKGLC V  
Sbjct: 325 ASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEK-HEILPDVFTYSILIKGLCGVDR 383

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           +  A G+ +EM +     +A  Y++LI    K G   +   +  +M E+G +PN +T++ 
Sbjct: 384 MEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFST 443

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           LI G+CK    EAA  +  EM  KG   + ++Y  ++ G  KDG
Sbjct: 444 LIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDG 487



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 141/295 (47%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I  L       E + +   ++ ++ ++P    +  ++  Y +   +++AL+++ EM
Sbjct: 231 YTILIRGLCGESRISEAESMFRTMR-NSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEM 289

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
               +   V  F  L++      ++   ++    M  + V P+   YN LI G   +  L
Sbjct: 290 LGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNL 349

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A  +  E+ K  + P + T+  LI GLC   R++EA  L ++ M+     P+   + +
Sbjct: 350 SEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQE-MKKKGFLPNAVTYNT 408

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G C  G +  A+ V  +M    IE +   +S+LI    KAG+      +  EM  +G
Sbjct: 409 LIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKG 468

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             P+ V Y ALI G  K+ + + AF +  EM + G   N  + + ++ GLCKDG+
Sbjct: 469 LLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGR 523



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 117/291 (40%), Gaps = 53/291 (18%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  II  L  AK++ + + ++  L    +   +  I C+V     R            E 
Sbjct: 73  YSAIIHVLTGAKLYAKARCLMRDLIQCLQNSRRSRICCSVFNVLSRL-----------ES 121

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
           S F    T   F  L+      G ++    ++  M+   +  AC  N+++ G V   R +
Sbjct: 122 SKF----TPNVFGVLIIAFSEMGLVEEALWVYYKMDVLPAMQAC--NMVLDGLVKKGRFD 175

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
             WKV+ +MV R   P +VT+G                                    +L
Sbjct: 176 TMWKVYGDMVARGASPNVVTYG------------------------------------TL 199

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           I G C  G+   A  + +EM+  KI     IY+ LI  L    R +E  ++ + M+  G 
Sbjct: 200 IDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGM 259

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            PN  TYN ++ G+CK    + A  +  EM   G   N +++ +++ GLCK
Sbjct: 260 LPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCK 310



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 138/304 (45%), Gaps = 17/304 (5%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           ++ E H + P   ++  Y ++I  L      +E   +L ++K     +P  + +  +I  
Sbjct: 357 SEIEKHEILP---DVFTYSILIKGLCGVDRMEEADGLLQEMKKKG-FLPNAVTYNTLIDG 412

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPD 151
           Y +   +E+A+++  +M+   ++  +  F+TL++     GK++    L+ +++ K + PD
Sbjct: 413 YCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPD 472

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-- 209
             +Y  LI G       ++A+++  EM +  L P + T   LI GLC + R+ +A+KL  
Sbjct: 473 VVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFL 532

Query: 210 ----------KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
                     K + +      P+  ++ +LI+GLC  G +  A     +M    +  D  
Sbjct: 533 AKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVF 592

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
               +I   F+A    +   +  ++ + G  PNS  Y  L  G+ +    ++A    +++
Sbjct: 593 TCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSALRCSEDL 652

Query: 320 GDKG 323
              G
Sbjct: 653 SGIG 656



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 5/130 (3%)

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI-EMDAGIYSSLISALFKAGR 273
           R+ + K    VF  LI     +G +  AL V  +M  D +  M A   + ++  L K GR
Sbjct: 118 RLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKM--DVLPAMQA--CNMVLDGLVKKGR 173

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +    +  +M  RG  PN VTY  LI G C++ DF  AF + DEM +K      + Y +
Sbjct: 174 FDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTI 233

Query: 334 ILGGLCKDGK 343
           ++ GLC + +
Sbjct: 234 LIRGLCGESR 243


>gi|224130680|ref|XP_002320901.1| predicted protein [Populus trichocarpa]
 gi|222861674|gb|EEE99216.1| predicted protein [Populus trichocarpa]
          Length = 475

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 171/344 (49%), Gaps = 17/344 (4%)

Query: 4   SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMF 63
           S  R+  L   Q DP LA ++F   +  PN         F+++   Y ++I KLGRAK F
Sbjct: 66  SPSRVQKLIASQSDPLLAKEIFDYASRQPN---------FQHSYSSYLILILKLGRAKYF 116

Query: 64  DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT 123
             +  +L  LK     V    +F  +I  YG A L ++AL++F  +  F+   + K  N 
Sbjct: 117 SFIDDLLTDLKSKNYPV-TPTLFSYIINIYGEANLPDKALKIFYTILKFDCNPSPKHLNG 175

Query: 124 LLNPKLTCGKLDRMK---ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +L  ++     + +K   +LF+    Y V P+  SYNILI    ++ ++  A+ +F++M 
Sbjct: 176 IL--EILVSHQNYIKPAFDLFKDAHTYDVFPNTKSYNILIRAFCLNGQISMAYSLFNQMF 233

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           KR + P + ++  L+  LC + +V+ A+ L ED++    V PD   + +L+  LC   +L
Sbjct: 234 KRDVMPDVESYRILMQALCRKSQVNGAVDLLEDMLNKGYV-PDALSYTTLLNSLCRKKKL 292

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A  +   M       D   Y+++I    + GR  +   +L++M+  GC PN V+Y  L
Sbjct: 293 REAYKLLCRMKVKGCNPDIIHYNTVILGFCREGRAMDACKVLEDMESNGCMPNLVSYRTL 352

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + G C +  F+ A + L+EM  KG   +    N ++ G C  GK
Sbjct: 353 VGGLCDQGMFDEAKSHLEEMMMKGFSPHFAVSNALIKGFCNVGK 396



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 87/200 (43%), Gaps = 37/200 (18%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           + TLLN      KL    +L   M+ K  +PD   YN +I G     R  DA KV ++M 
Sbjct: 279 YTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIIHYNTVILGFCREGRAMDACKVLEDME 338

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
                P LV++ TL+ GLC +   DEA    E++M +    P   V  +LIKG C VG++
Sbjct: 339 SNGCMPNLVSYRTLVGGLCDQGMFDEAKSHLEEMM-MKGFSPHFAVSNALIKGFCNVGKI 397

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A GV EE+++                                    G  P++ T+  +
Sbjct: 398 EEACGVVEELLK-----------------------------------HGEAPHTETWVMM 422

Query: 300 ISGFCKEEDFEAAFTILDEM 319
           +S  C+ +D +    ILD++
Sbjct: 423 VSRICEVDDLQRIGEILDKV 442


>gi|357440039|ref|XP_003590297.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479345|gb|AES60548.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 661

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 167/327 (51%), Gaps = 14/327 (4%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L R + D K AL +F+    + N         F+++   YD+++  LGR K  D+M++IL
Sbjct: 93  LFRYKDDWKSALAIFRWAGSHSN---------FKHSQQSYDMMVDILGRMKAMDKMREIL 143

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130
            +++ ++ I    I    V+  +  AR  + A+++FD++    ++   +  N LL+    
Sbjct: 144 EEMRQESLITLNTI--AKVMRRFVGARQWKDAVRIFDDLQFLGLEKNTESMNVLLDTLCK 201

Query: 131 CGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
              +++ +E++  ++ Y++P+A ++NILIHG    RR+E+A     EM     +P ++++
Sbjct: 202 EKFVEQAREIYLELKHYIAPNAHTFNILIHGWCNIRRVEEAHWTIQEMKGYGCRPCVISY 261

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
            T+I   C E   D    L ++ M+  N  P+   + +++  L    +   AL V E M 
Sbjct: 262 STIIQCYCQEQNFDRVYDLLDE-MQAQNCSPNVVTYTTIMCALAKAEKFEEALQVVERMN 320

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILK-EMKERGCKPNSVTYNALISGFCKEEDF 309
                 D   ++SLI  L +AGR ++   + K  M +    PN+ TYN++IS FC     
Sbjct: 321 AVGCRPDTLFFNSLIYTLGRAGRIDDATHVFKVAMPKASVAPNTSTYNSMISMFCYYAQE 380

Query: 310 EAAFTILDEMGDKG-CKANPISYNVIL 335
           E AF IL EM   G CK +  +Y+ ++
Sbjct: 381 ERAFGILKEMEKSGLCKPDIQTYHPLI 407



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 135/294 (45%), Gaps = 5/294 (1%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS 110
           D++ TK+G+    D++ Q L   +    I   E +   ++  Y      + AL +F    
Sbjct: 54  DILTTKIGKGNSEDDILQSLISDEGVNGIHLSENLINRLLFRYKDD--WKSALAIFRWAG 111

Query: 111 SF-NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
           S  N + + + ++ +++       +D+M+E+ + M +       +   ++   V +R+ +
Sbjct: 112 SHSNFKHSQQSYDMMVDILGRMKAMDKMREILEEMRQESLITLNTIAKVMRRFVGARQWK 171

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           DA ++FD++    L+    +   L+  LC E  V++A ++  ++   + + P+   F  L
Sbjct: 172 DAVRIFDDLQFLGLEKNTESMNVLLDTLCKEKFVEQAREIYLELK--HYIAPNAHTFNIL 229

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           I G C +  +  A    +EM           YS++I    +    +    +L EM+ + C
Sbjct: 230 IHGWCNIRRVEEAHWTIQEMKGYGCRPCVISYSTIIQCYCQEQNFDRVYDLLDEMQAQNC 289

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            PN VTY  ++    K E FE A  +++ M   GC+ + + +N ++  L + G+
Sbjct: 290 SPNVVTYTTIMCALAKAEKFEEALQVVERMNAVGCRPDTLFFNSLIYTLGRAGR 343



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 10/222 (4%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  I +  +I  Y + +  +R   + DEM + N    V  + T++       K ++ +E 
Sbjct: 256 PCVISYSTIIQCYCQEQNFDRVYDLLDEMQAQNCSPNVVTYTTIM---CALAKAEKFEEA 312

Query: 141 FQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFD-EMVKRRLQPTLVTFGTLIY 195
            Q++E+  +    PD   +N LI+    + R++DA  VF   M K  + P   T+ ++I 
Sbjct: 313 LQVVERMNAVGCRPDTLFFNSLIYTLGRAGRIDDATHVFKVAMPKASVAPNTSTYNSMIS 372

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG-VKEEMV-RDK 253
             C   + + A  + +++ +    KPD Q +  LIK    + E+   L  +  +MV +  
Sbjct: 373 MFCYYAQEERAFGILKEMEKSGLCKPDIQTYHPLIKSCFKMREIDTWLNDILNDMVNKYH 432

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
           I +D   Y+ LI  L++A R      + +EM ++   P   T
Sbjct: 433 IGLDLSTYTLLIHGLYRADRCKWAFDLFEEMADQDIVPRYKT 474



 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 66/150 (44%), Gaps = 4/150 (2%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R + L ++ +I  LGRA   D+   +         + P    + ++I  +      ERA 
Sbjct: 325 RPDTLFFNSLIYTLGRAGRIDDATHVFKVAMPKASVAPNTSTYNSMISMFCYYAQEERAF 384

Query: 104 QMFDEMSSFNV-QMTVKFFNTLLNPKLTCGKLDRMKE--LFQIMEKY-VSPDACSYNILI 159
            +  EM    + +  ++ ++ L+       ++D      L  ++ KY +  D  +Y +LI
Sbjct: 385 GILKEMEKSGLCKPDIQTYHPLIKSCFKMREIDTWLNDILNDMVNKYHIGLDLSTYTLLI 444

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
           HG   + R + A+ +F+EM  + + P   T
Sbjct: 445 HGLYRADRCKWAFDLFEEMADQDIVPRYKT 474


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 165/333 (49%), Gaps = 14/333 (4%)

Query: 14  LQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL 73
           LQ D + AL+ F+          A   + + +N   Y  +I  LGRAKMF E+Q +L ++
Sbjct: 192 LQTDAQNALRFFQ---------WADKQEGYDHNTDAYFTMIDILGRAKMFTELQSLLQKM 242

Query: 74  KHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ--MTVKFFNTLLNPKLTC 131
           +   R + + ++   V+  YGR+   + +L+ F+ M     +  +    +N++L   +  
Sbjct: 243 QTQGREITRSMLHSFVMS-YGRSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKN 301

Query: 132 GKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
            KLD  + LF Q++   VS +  +Y  +I    +  ++EDA K+ D+M++    P +VT+
Sbjct: 302 KKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTY 361

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
             +I  LC    +++A  + +  MR    +P+   + +LI+GLCAV     AL +   M 
Sbjct: 362 TIVISALCKRKMIEQAYGVLQK-MRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLME 420

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
           +  +  +   Y+ L   L K  R +    +  E   RG KPN VTYN L++G+C+     
Sbjct: 421 QGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLI 480

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            A  IL EM    C  + ++Y  ++ GL +  +
Sbjct: 481 EAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQ 513



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 144/299 (48%), Gaps = 4/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL +  +I     + KM D M+ +   ++++    P  + +  VI    + +++E+A  +
Sbjct: 323 NLTYTSMIQCFFLKEKMEDAMKLLDDMIQNN--YAPDVVTYTIVISALCKRKMIEQAYGV 380

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
             +M     +  +  +N L+       + +   EL  +ME+  V P+  +Y IL HG   
Sbjct: 381 LQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCK 440

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            RRL+ A ++F+E + R L+P  VT+ TL+ G C   R+ EA+ + ++ M   +  PD  
Sbjct: 441 LRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKE-MHQNDCTPDHV 499

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI+GL    +L  AL + +EM     +++    + L   L + G   +     + M
Sbjct: 500 TYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRM 559

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           K+RG   ++  Y   I       + E A  +L EM +KG   N  +YN ++ G C+ G+
Sbjct: 560 KDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGR 618


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 152/369 (41%), Gaps = 72/369 (19%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL  Y++++  L      D    +   L+   ++ P  I +  ++    +   L+ AL +
Sbjct: 157 NLQTYNIVLRSLCARGDLDRAVTLFDSLRR-RQVAPDCITYSTLMCGLAKQDRLDHALDL 215

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCG--------------------------------- 132
            DEM    VQ  V  +N LL      G                                 
Sbjct: 216 LDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLC 275

Query: 133 KLDRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
           K  R KE+ ++ E+ V+    PD  +Y ILIHG   S  ++ A +V+ E++K  L     
Sbjct: 276 KFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAA 335

Query: 189 TFGTLIYGLCLELRVDEALKLKEDI-------MRVYNVK--------------------- 220
            + +L+ G C   RV EA K  +         +R YN+                      
Sbjct: 336 MYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLE 395

Query: 221 ------PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
                 PD   F +LI GLC  G  + A  + EE      ++D   YSS+I+ L   GR 
Sbjct: 396 KDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRL 455

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            +   + ++M + GCKPNS  YNALISGFC+      A  I  +M D GC    I+YN +
Sbjct: 456 VDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTL 515

Query: 335 LGGLCKDGK 343
           + GLCK  K
Sbjct: 516 IDGLCKAEK 524



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 155/301 (51%), Gaps = 3/301 (0%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R NL  Y++++  L +   F E+ ++  ++  +  + P  I +  +I    R+  ++ A 
Sbjct: 261 RPNLATYNVMLDGLCKFGRFKEVGEVWERMVANN-LQPDVITYGILIHGLCRSGDVDGAA 319

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCV 163
           +++ E+    + +    +N+L+      G++    + +         +  +YNI+I G  
Sbjct: 320 RVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLF 379

Query: 164 VSRRLEDAWKVFDEMVKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
            S  +++A +++D + K     P  VTFGTLI+GLC     ++A  + E+  RV   + D
Sbjct: 380 DSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEE-ARVSGKQLD 438

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              ++S+I GLC VG L  A+ V E+M +D  + ++ IY++LIS   +  R ++   I  
Sbjct: 439 VFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYS 498

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +M + GC P  +TYN LI G CK E ++ A ++  EM + G   +  +Y  ++ GL  D 
Sbjct: 499 KMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDK 558

Query: 343 K 343
           K
Sbjct: 559 K 559



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 157/309 (50%), Gaps = 8/309 (2%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           A+ L+P   +++ Y ++I  L R+   D   ++  ++   T +V    ++ +++  + +A
Sbjct: 292 ANNLQP---DVITYGILIHGLCRSGDVDGAARVYSEIIK-TGLVIDAAMYNSLVKGFCQA 347

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PDACS 154
             ++ A + +D  + F     ++ +N ++      G +D   EL+ ++EK V+  PD  +
Sbjct: 348 GRVQEAWKFWDS-AGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVT 406

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           +  LIHG   +     A+ +F+E      Q  + ++ ++I GLC   R+ +A+K+ E  M
Sbjct: 407 FGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEK-M 465

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
                KP+  ++ +LI G C V   S A+ +  +M  +        Y++LI  L KA + 
Sbjct: 466 DKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKY 525

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            E  ++ +EM E G  P+  TY +LI G   ++  + A +I  ++  KG K + + +N++
Sbjct: 526 QEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNIL 585

Query: 335 LGGLCKDGK 343
           + GLC  GK
Sbjct: 586 IHGLCSAGK 594



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 153/334 (45%), Gaps = 38/334 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL  Y+++I  L  + M DE  ++   L+ D   +P  + F  +I    +     +A  +
Sbjct: 367 NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTI 426

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVV 164
           F+E      Q+ V  +++++N     G+L    ++++ M+K    P++  YN LI G   
Sbjct: 427 FEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQ 486

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R  DA +++ +M      PT++T+ TLI GLC   +  EA  +  +++      PD  
Sbjct: 487 VYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVE-NGFTPDIT 545

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SLI+GL +  ++  AL + ++++   +++D  +++ LI  L  AG+ +E   +  +M
Sbjct: 546 TYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDM 605

Query: 285 KER-GCKPNSVTYNAL-----------------------------------ISGFCKEED 308
           KE+  C PN VTYN L                                   I G C  + 
Sbjct: 606 KEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDR 665

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
                 +LDE+  +G     I++N+++  + K G
Sbjct: 666 IHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYG 699



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 121/253 (47%), Gaps = 6/253 (2%)

Query: 95  RARLLERALQMFDEMS--SFNVQMT--VKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVS 149
           RAR    A   F  +S  +F  ++   ++ +N +L      G LDR   LF  +  + V+
Sbjct: 131 RARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVA 190

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PD  +Y+ L+ G     RL+ A  + DEM +  +QP +V +  L+ G       ++ +++
Sbjct: 191 PDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRV 250

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            + +++    +P+   +  ++ GLC  G       V E MV + ++ D   Y  LI  L 
Sbjct: 251 WDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLC 310

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           ++G  +    +  E+ + G   ++  YN+L+ GFC+    + A+   D  G  G + N  
Sbjct: 311 RSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLR 369

Query: 330 SYNVILGGLCKDG 342
           +YN+++ GL   G
Sbjct: 370 TYNIMIKGLFDSG 382



 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 261 YSSLISALFKAGRKNEFPAILKEMKE----RGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +++L+ A  +A R ++  A    +      R   PN  TYN ++   C   D + A T+ 
Sbjct: 122 HNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLF 181

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
           D +  +    + I+Y+ ++ GL K  +
Sbjct: 182 DSLRRRQVAPDCITYSTLMCGLAKQDR 208


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 171/371 (46%), Gaps = 45/371 (12%)

Query: 4   SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMF 63
           S  +L  L R Q D   AL LF+  +  PN + AHP      ++ H   ++ +L RA  F
Sbjct: 58  SPSQLLDLLRRQPDSSSALSLFQWASAQPNYS-AHP------SVFHE--LLRQLARAGSF 108

Query: 64  DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ-MFDEMS-SFNVQMTVKFF 121
           D M  +L Q+ H ++I   E  F   +  Y  +  L   +  +F  M   F V+   +F+
Sbjct: 109 DSMLTLLRQM-HSSKIPVDESTFLIFLETYATSHHLHAEINPLFLLMERDFAVKPDTRFY 167

Query: 122 NTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           N  L+  +   KL  ++ L  +++   V PD  ++NILI     + +L  A  + ++M  
Sbjct: 168 NVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPN 227

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR------------------------- 215
             L+P   TF TL+ G   E  V+ AL++KE ++                          
Sbjct: 228 YGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEE 287

Query: 216 ----VYNVK---PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
               +Y  +   PD   F +L+ GLC  G +   L + + M+    E+D   Y+SLIS L
Sbjct: 288 ALRFIYEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGL 347

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K G  +E   IL  M  R C+PN+VTYN LI   CKE   EAA  +   +  KG   + 
Sbjct: 348 CKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDV 407

Query: 329 ISYNVILGGLC 339
            ++N ++ GLC
Sbjct: 408 CTFNSLIQGLC 418



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/246 (34%), Positives = 117/246 (47%), Gaps = 4/246 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
           +E AL+   E   F        FN L+N     G + +  E+   M EK    D  +YN 
Sbjct: 285 IEEALRFIYEEEGFCPDQVT--FNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNS 342

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G      +++A ++   MV R  +P  VT+ TLI  LC E  V+ A +L   ++   
Sbjct: 343 LISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELAR-VLTSK 401

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            V PD   F SLI+GLC      +A+ + EEM     + D   YS LI +L    R  E 
Sbjct: 402 GVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEA 461

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +LKEM+  GC  N V YN LI G CK      A  I D+M   G   + ++YN ++ G
Sbjct: 462 LMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLING 521

Query: 338 LCKDGK 343
           LCK  +
Sbjct: 522 LCKSKR 527



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 129/246 (52%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
           ++ A+++   M S + +     +NTL+        ++   EL +++  K V PD C++N 
Sbjct: 353 IDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNS 412

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G  ++   E A ++F+EM ++   P   T+  LI  LC E R+ EAL L ++ M + 
Sbjct: 413 LIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKE-MELS 471

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
               +  V+ +LI GLC    +  A  + ++M    +   +  Y++LI+ L K+ R  E 
Sbjct: 472 GCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEA 531

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++ +M   G KP+  TY  ++  FC++ D + A  I+  M   GC+ + ++Y  ++GG
Sbjct: 532 AQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGG 591

Query: 338 LCKDGK 343
           LCK G+
Sbjct: 592 LCKAGR 597



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 151/339 (44%), Gaps = 40/339 (11%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLL 99
           K F  ++  Y+ +I+ L +    DE  +ILH +   D    P  + +  +IG   +   +
Sbjct: 331 KGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCE--PNTVTYNTLIGTLCKENHV 388

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           E A ++   ++S  V   V  FN+L+         +   ELF+ M EK   PD  +Y+IL
Sbjct: 389 EAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSIL 448

Query: 159 IHGCVVSRRLE-----------------------------------DAWKVFDEMVKRRL 183
           I      RRL+                                   DA  +FD+M    +
Sbjct: 449 IESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGV 508

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
             + VT+ TLI GLC   RV+EA +L  D M +  +KPD   + +++K  C  G++  A 
Sbjct: 509 SRSSVTYNTLINGLCKSKRVEEAAQLM-DQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAA 567

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            + + M  +  E D   Y +LI  L KAGR +    +L+ ++ +G       YN +I   
Sbjct: 568 DIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQAL 627

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           CK +  + A  +  EM +KG   + I+Y ++  GLC  G
Sbjct: 628 CKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGG 666



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 126/263 (47%), Gaps = 2/263 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P E  F  ++  +     +E AL++ + M     ++T    N L+N     G+++     
Sbjct: 232 PDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALR- 290

Query: 141 FQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
           F   E+   PD  ++N L++G   +  ++   ++ D M+++  +  + T+ +LI GLC  
Sbjct: 291 FIYEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKL 350

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
             +DEA+++    M   + +P+   + +LI  LC    +  A  +   +    +  D   
Sbjct: 351 GEIDEAVEILHH-MVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCT 409

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
           ++SLI  L     +     + +EMKE+GC P+  TY+ LI   C E   + A  +L EM 
Sbjct: 410 FNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEME 469

Query: 321 DKGCKANPISYNVILGGLCKDGK 343
             GC  N + YN ++ GLCK+ +
Sbjct: 470 LSGCARNVVVYNTLIDGLCKNNR 492



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 69/129 (53%)

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           R + VKPD + +   +  L    +L L   +  +MV D +  D   ++ LI AL KA + 
Sbjct: 156 RDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQL 215

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
                +L++M   G +P+  T+  L+ GF +E D E A  I + M + GC+   +S NV+
Sbjct: 216 RPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVL 275

Query: 335 LGGLCKDGK 343
           + GLCK+G+
Sbjct: 276 VNGLCKEGR 284



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 116/280 (41%), Gaps = 38/280 (13%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P E  +  +I      R L+ AL +  EM        V  +NTL++      ++   +++
Sbjct: 440 PDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDI 499

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F  ME   VS  + +YN LI+G   S+R+E+A ++ D+M+   L+P   T+ T++   C 
Sbjct: 500 FDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQ 559

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  +  A  + ++ M +   +PD   + +LI GLC  G + +A  +   +    + +   
Sbjct: 560 QGDIKRAADIVQN-MTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQ 618

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERG------------------------------- 288
            Y+ +I AL K  R  E   + +EM E+G                               
Sbjct: 619 AYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVE 678

Query: 289 -----CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
                  P   ++  L  G C     +    +++ + +KG
Sbjct: 679 MLEKGILPEFPSFGFLAEGLCSLSMEDTLIQLINMVMEKG 718



 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 102/236 (43%), Gaps = 49/236 (20%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I  L ++K  +E  Q++ Q+  +  + P +  +  ++ ++ +   ++RA  +   M
Sbjct: 515 YNTLINGLCKSKRVEEAAQLMDQMIMEG-LKPDKFTYTTMLKYFCQQGDIKRAADIVQNM 573

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLD--------------------------------RM 137
           +    +  +  + TL+      G++D                                R 
Sbjct: 574 TLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRT 633

Query: 138 KE---LF-QIMEKYVSPDACSYNILIHG-CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           KE   LF ++MEK   PD  +Y I+  G C     +++A     EM+++ + P   +FG 
Sbjct: 634 KEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSFGF 693

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA----SLIKGLCAVGELSLALG 244
           L  GLC       +L +++ ++++ N+  +   F+    S+I+G   + + + AL 
Sbjct: 694 LAEGLC-------SLSMEDTLIQLINMVMEKGRFSQSETSIIRGFLKIQKFNDALA 742


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 149/299 (49%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++ H++++I    R +  D    +L ++       P  + F ++I          RA++ 
Sbjct: 118 DVFHFNILINCFSRLQRVDFAFSVLGKII-KLGFEPDAVTFSSLINGLCFEDKFARAMEF 176

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHGCVV 164
           FDEM +   Q  +  +NT++      GK      L + M+K    PD   YN +I G   
Sbjct: 177 FDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCK 236

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            R + +A  +F E+  + ++P + T+  L++GLC   + +EA  L  ++M + N+ PD  
Sbjct: 237 DRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSL-NIMPDVV 295

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F  L+  LC  G LS A G+ + M+   +E +   Y+SL++      +  E   +   M
Sbjct: 296 TFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAM 355

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +GC PN V+YN LI+G+CK +  + A  + DEM  +G   N  +YN ++ GLC+ G+
Sbjct: 356 ITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGR 414



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 129/264 (48%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +I+  +I    + RL+  AL +F E+    V+  V  ++ L++      + +    L
Sbjct: 222 PDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASAL 281

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++M   + PD  ++NIL+        L +A  +   M+++ ++P   T+ +L+ G CL
Sbjct: 282 FNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCL 341

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           + +V EA ++  D M      P+   +  LI G C    +  A  + +EM    +  +  
Sbjct: 342 QNKVFEA-RMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTF 400

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L +AGR  E   + K+M+ +GC P+ VT   L+   CK    + A  +   M
Sbjct: 401 NYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAM 460

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
            D   K N ++Y++++  + K GK
Sbjct: 461 QDSCLKPNLVTYDILIRAMYKSGK 484



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 127/237 (53%), Gaps = 15/237 (6%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
           FD++ S  V+  +K + T+L+       L +  EL +I       D   +NILI+     
Sbjct: 87  FDKLLSALVR--IKHYGTVLS-------LSKRIELLRI-----ERDVFHFNILINCFSRL 132

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
           +R++ A+ V  +++K   +P  VTF +LI GLC E +   A++  ++ M     +P+   
Sbjct: 133 QRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDE-MVASGYQPNLHT 191

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + ++IKG C +G+ ++A+G+ ++M +     D  IY+++I  L K    +E   I  E+K
Sbjct: 192 YNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIK 251

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            +G +P+  TY+ L+ G C  +  E A  + +EM       + +++N+++  LCK+G
Sbjct: 252 GKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEG 308



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 37/183 (20%)

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           GC ++  +EDA   F+ M+ +   P +V F  L+  L                     +K
Sbjct: 59  GCSLTN-IEDALFSFNHMIHKHPLPCIVEFDKLLSAL-------------------VRIK 98

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
             G V               L+L  + E++R  IE D   ++ LI+   +  R +   ++
Sbjct: 99  HYGTV---------------LSLSKRIELLR--IERDVFHFNILINCFSRLQRVDFAFSV 141

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L ++ + G +P++VT+++LI+G C E+ F  A    DEM   G + N  +YN I+ G CK
Sbjct: 142 LGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCK 201

Query: 341 DGK 343
            GK
Sbjct: 202 IGK 204


>gi|222613030|gb|EEE51162.1| hypothetical protein OsJ_31934 [Oryza sativa Japonica Group]
          Length = 404

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 140/249 (56%), Gaps = 5/249 (2%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE----LFQIMEKYVSPDACS 154
           L +A  +  ++ ++ +  +V  +N+L++     G    M      L +++E  +SP A +
Sbjct: 142 LRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVT 201

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           + +LI+G   +     A +VF+EM ++ +  ++VT+ +LI GLC E +V+E +KL E+ M
Sbjct: 202 FGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEE-M 260

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
               + P+   F  ++KG C  G ++ A    + M    +E D  IY+ LI    + G+ 
Sbjct: 261 EDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKM 320

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            +  A+ + M ++G  PN  TYN LI+GF +  D+ +A  +LDEM +KG +A+ ++YNV+
Sbjct: 321 EDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVL 380

Query: 335 LGGLCKDGK 343
           +G LC  G+
Sbjct: 381 IGALCCKGE 389



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 122/289 (42%), Gaps = 40/289 (13%)

Query: 18  PKLALQLFKNPNPNPNDTEAHPLKP--FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 75
           P  A+   +       D +A  L P    YN L  D    K G   M+  +  +L ++  
Sbjct: 135 PLRAIGQLRKAGDVAKDIKAWGLAPSVATYNSL-IDGYCKKGGAGNMY-HVDMLLKEMV- 191

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           +  I P  + F  +I  Y +      A+++F+EM    +  +V  +N+L++   + GK+ 
Sbjct: 192 EAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKV- 250

Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
                                            E+  K+ +EM    L P  +TFG ++ 
Sbjct: 251 ---------------------------------EEGVKLMEEMEDLGLSPNEITFGCVLK 277

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C +  + +A     D M   NV+PD  ++  LI     +G++  A+ VKE M +  I 
Sbjct: 278 GFCKKGMMADANDWI-DGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGIS 336

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
            +   Y+ LI+   ++G       +L EMKE+G + + VTYN LI   C
Sbjct: 337 PNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALC 385


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 139/269 (51%), Gaps = 6/269 (2%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  I F  +I    R + LE A  +   M++  V+  V  +NTL++     G+L   ++L
Sbjct: 150 PTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQL 209

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
            + M+    +PD  +Y+  ++G   S ++ +A +V ++M      P +VT+ T++ GLC 
Sbjct: 210 LERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCK 269

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             ++D AL++ E +        +   +++++ GLC +G    A  V E M R     D  
Sbjct: 270 SGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVV 329

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YSSL++ L KAG+  E    ++EM   GCKPN+VTY +L+ G C       A  +++EM
Sbjct: 330 TYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEM 389

Query: 320 GDKG-----CKANPISYNVILGGLCKDGK 343
              G     C  +  +YN ++GGLCK G+
Sbjct: 390 SSGGGGGDHCPPSVSTYNALIGGLCKAGR 418



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 156/300 (52%), Gaps = 4/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y  +++   +A   +E +++L ++     + P  +++  V+    ++  L  AL++
Sbjct: 81  DLVTYSTLLSGYCKAGKVEESRELLKEVISRG-LRPDALMYTKVMASLCKSARLGEALEL 139

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            +EM       T+  FNTL++       L+    L Q M    V  D  +YN L+ G   
Sbjct: 140 LEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCK 199

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + RL++A ++ + M      P +V + + +YGLC   +V  A ++ E  MR  +  P+  
Sbjct: 200 AGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQ-MRDSDHDPNVV 258

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVR-DKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
            + +++ GLC  G++  AL + E+M   D   ++   YS+++  L K GR  E  ++++ 
Sbjct: 259 TYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEA 318

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M   GC+P+ VTY++L++G CK    E A   + EM  +GCK N ++Y  ++ GLC  G+
Sbjct: 319 MARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGR 378



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 113/195 (57%), Gaps = 1/195 (0%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P++ ++N L++G     R  D  ++ + M  R +QP +V++  L+ GLC   R  EA +L
Sbjct: 8   PNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEEL 67

Query: 210 KED-IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
             D I R     PD   +++L+ G C  G++  +  + +E++   +  DA +Y+ ++++L
Sbjct: 68  VRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASL 127

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K+ R  E   +L+EM   GC P  +T+N LISG C+E++ E A ++L  M   G KA+ 
Sbjct: 128 CKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADV 187

Query: 329 ISYNVILGGLCKDGK 343
           ++YN ++ GLCK G+
Sbjct: 188 VTYNTLMDGLCKAGR 202



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 138/272 (50%), Gaps = 16/272 (5%)

Query: 81  PKEIIFCNVI-GFY--GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           P  + F  ++ GF   GR    ER   + + M++  +Q  V  +N LL       KL+R 
Sbjct: 8   PNSVTFNALVNGFSKQGRPGDCER---LLETMAARGIQPNVVSYNGLLEGLC---KLERW 61

Query: 138 KELFQIMEKYVS------PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
            E  +++   +S      PD  +Y+ L+ G   + ++E++ ++  E++ R L+P  + + 
Sbjct: 62  HEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYT 121

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
            ++  LC   R+ EAL+L E+++R     P    F +LI G C    L +A  + + M  
Sbjct: 122 KVMASLCKSARLGEALELLEEMIRA-GCCPTLITFNTLISGCCREKNLEMADSLLQTMAA 180

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
             ++ D   Y++L+  L KAGR  E   +L+ MK  GC P+ V Y++ + G CK      
Sbjct: 181 SGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLN 240

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           A  +L++M D     N ++YN IL GLCK GK
Sbjct: 241 AHQVLEQMRDSDHDPNVVTYNTILDGLCKSGK 272



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 36/57 (63%)

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           M   GC PNSVT+NAL++GF K+        +L+ M  +G + N +SYN +L GLCK
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCK 57



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 74/167 (44%), Gaps = 7/167 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  ++  L +     E + ++  +       P  + + +++    +A  +E A++ 
Sbjct: 292 NVVGYSTVVDGLCKLGRTQEARSVMEAMAR-AGCRPDVVTYSSLVNGLCKAGKIEEAVEA 350

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK------YVSPDACSYNILI 159
             EM+    +     + +L++   +CG+L   + + + M        +  P   +YN LI
Sbjct: 351 VREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALI 410

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA 206
            G   + R++DA K F  M  +   P  V++ T++ GL    R  +A
Sbjct: 411 GGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQA 457


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 154/330 (46%), Gaps = 40/330 (12%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS- 111
           +I     ++ F  + Q+L ++K + R++  E IF  +    G+A L   A+  F  M++ 
Sbjct: 95  LIENYATSREFHFIHQVLDRMKREGRVL-TETIFILIFKACGKAHLPGEAVNFFHRMAND 153

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRM----KELFQIMEKYVSPDACSYNILIHGCVVSRR 167
            + + TVK FN++LN  +  G           +F    K   P+  +YN++I       +
Sbjct: 154 LHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQ 213

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR--------VYNV 219
           ++ A   F EM  +   P + T+ TL+ GLC E RVDEA+ L +++           +NV
Sbjct: 214 IDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNV 273

Query: 220 --------------------------KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
                                      P+   + +LI GLC  G+L  AL + E+MV  K
Sbjct: 274 LIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSK 333

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
              +   Y ++I+ L K  R  +   IL  M+ERG K N   Y++LISG  KE   E A 
Sbjct: 334 CVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAV 393

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +  EM +KGCK N + Y   + GLC+D K
Sbjct: 394 RLWKEMAEKGCKPNVVVYGAFIDGLCRDEK 423



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 149/304 (49%), Gaps = 3/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F+ NLL Y+LII  L +    D       ++       P    +  ++    + R ++
Sbjct: 192 KGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKN-CNPDVFTYSTLMNGLCKERRVD 250

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            A+ + DEM +         FN L++     G L R  +L   M  K   P+  +YN LI
Sbjct: 251 EAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLI 310

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           HG  +  +L+ A  + ++MV  +  P  VT+GT+I GL  + R ++ + +    M     
Sbjct: 311 HGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMS-MEERGQ 369

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           K +  +++SLI GL   G+   A+ + +EM     + +  +Y + I  L +  + +E   
Sbjct: 370 KANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAED 429

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           IL+EM  +G  PN+ TY++L+ GF K+ D + A  +  EM  +  + N +  +V+L GLC
Sbjct: 430 ILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLC 489

Query: 340 KDGK 343
           + G+
Sbjct: 490 ESGR 493



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 153/346 (44%), Gaps = 52/346 (15%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           PLK    ++  Y  ++  L + +  DE   +L +++ +   +P  + F  +I    +   
Sbjct: 225 PLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEG-CLPNPVTFNVLIDALSKNGD 283

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACS 154
           L RA ++ D M           +NTL++     GKLD+      ++EK VS    P+  +
Sbjct: 284 LSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKA---LSLLEKMVSSKCVPNQVT 340

Query: 155 YNILIHGCVVSRRLED-----------------------------------AWKVFDEMV 179
           Y  +I+G V  RR ED                                   A +++ EM 
Sbjct: 341 YGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMA 400

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK---PDGQVFASLIKGLCAV 236
           ++  +P +V +G  I GLC + + DEA    EDI++    K   P+   ++SL+KG    
Sbjct: 401 EKGCKPNVVVYGAFIDGLCRDEKPDEA----EDILQEMLSKGFLPNAFTYSSLMKGFFKK 456

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           G+   A+ V +EM+   +  +    S L++ L ++GR  E   +   M   G KP+ V Y
Sbjct: 457 GDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAY 516

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANP--ISYNVILGGLCK 340
           +++I G C     +    +  EM  +  K+ P  ++YN++   LC+
Sbjct: 517 SSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCR 562



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 22/186 (11%)

Query: 142 QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
           ++M + +  +    ++L++G   S RL +A  V+  M+   L+P +V + ++I GLC   
Sbjct: 468 EMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVG 527

Query: 202 RVDEALKLKEDIM-RVYNVKPDGQVFASLIKGLCAVGEL------------------SLA 242
            VD+ LKL  ++  +    +PD   +  L   LC    L                  SL 
Sbjct: 528 SVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLT 587

Query: 243 LGVKEEMVRDKIE--MDAGIY-SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             +  E +R++I    D  ++   L+  L K  RK     I++EM  R   P   T++ +
Sbjct: 588 CNIFLETLRERINPPQDGRLFLDELVVRLLKRERKLSALRIVEEMLLRFLPPEPSTWSRV 647

Query: 300 ISGFCK 305
           I   CK
Sbjct: 648 IQRTCK 653


>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
 gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
          Length = 694

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 160/301 (53%), Gaps = 8/301 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKH---DTRIVPKEIIFCNVIGFYGRARLLERA 102
           N++ Y+++I  L +   FDE  ++  ++K    +  +     + C +         ++ A
Sbjct: 254 NVVTYNVMINGLCKMGRFDESLEMWERMKKNECEMDLFTYSSLICGLCDVGN----VDGA 309

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGC 162
           ++++ EM   +V + V  +N LLN     GK+    EL+ +M K    +  SYNI I G 
Sbjct: 310 VEVYKEMVKRSVVVDVVTYNALLNGFCRAGKIKESFELWVMMGKENCHNVVSYNIFIRGL 369

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             +R++E+A  V++ + +R       T+G LI+GLC    +++ALK+ ++  +    K D
Sbjct: 370 FENRKVEEAISVWELLRRRGSGADSTTYGVLIHGLCKNGHLNKALKILKE-AKDGGDKLD 428

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              ++S++ GL   G +  ALG+  +M +   E+   + + LI+   +A +  E     +
Sbjct: 429 AFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFFR 488

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           EM+ +GC P  V+YN LI+G CK E F  A++ + EM +K  K + I+Y++++ GLC+  
Sbjct: 489 EMETKGCSPTVVSYNTLINGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGK 548

Query: 343 K 343
           K
Sbjct: 549 K 549



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 173/380 (45%), Gaps = 48/380 (12%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRA 60
           KP S+ +L  L + +K PK AL LF + +  P  T +  +         + LI+ +L   
Sbjct: 6   KPLSARQLFKLLKAEKSPKSALALFDSASRQPGYTHSPHI---------FLLILRRLSDP 56

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS-FNVQMTVK 119
           K+   + +I+  +K       ++++   V+  Y ++++   AL  F +M   F  +  ++
Sbjct: 57  KLVVHVTRIVELIKTQKCKCTEDVVL-TVLKAYAKSKMPNEALDCFQKMEEIFGCKPGIR 115

Query: 120 FFNTLLNPKLTCGKLDRMKELFQIME---------------------------------- 145
            +N LLN  +    L++ +      E                                  
Sbjct: 116 SYNALLNAFIEANLLEKAESFLAYFETVGILPNLQTYNILIKISVKKRQFVEAKGLLDWM 175

Query: 146 --KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
             K + PD  SY  +I+G V S  L  A +VFDEM +R L P ++ +  +I G       
Sbjct: 176 WSKDLKPDVYSYGTVINGMVKSGDLVSALEVFDEMFERGLVPDVMCYNIMIDGFFKRGDY 235

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
            +  ++ E +++   V P+   +  +I GLC +G    +L + E M +++ EMD   YSS
Sbjct: 236 VQGKEIWERLVKGSCVYPNVVTYNVMINGLCKMGRFDESLEMWERMKKNECEMDLFTYSS 295

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LI  L   G  +    + KEM +R    + VTYNAL++GFC+    + +F +   MG + 
Sbjct: 296 LICGLCDVGNVDGAVEVYKEMVKRSVVVDVVTYNALLNGFCRAGKIKESFELWVMMGKEN 355

Query: 324 CKANPISYNVILGGLCKDGK 343
           C  N +SYN+ + GL ++ K
Sbjct: 356 CH-NVVSYNIFIRGLFENRK 374



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 147/302 (48%), Gaps = 7/302 (2%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +N++ Y++ I  L   +  +E   +   L+              + G      L  +AL+
Sbjct: 357 HNVVSYNIFIRGLFENRKVEEAISVWELLRRRGSGADSTTYGVLIHGLCKNGHL-NKALK 415

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY---VSPDACSYNILIHG 161
           +  E      ++    ++++++     G++D    +   M+KY   +SP  C  N LI+G
Sbjct: 416 ILKEAKDGGDKLDAFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPHVC--NPLING 473

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
            V + +LE+A   F EM  +   PT+V++ TLI GLC   R  +A    ++++   + KP
Sbjct: 474 FVRASKLEEAICFFREMETKGCSPTVVSYNTLINGLCKAERFSDAYSFVKEMLE-KDWKP 532

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   ++ L+ GLC   ++ +AL +  +++   +E D  +++ L+  L  AG+  +   + 
Sbjct: 533 DMITYSLLMDGLCQGKKIDMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKIEDALLLY 592

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             MK+  C PN VT+N L+ G  K  + E A  I   M   G + + ISYN+ L GLC  
Sbjct: 593 SNMKQSNCLPNLVTHNTLMDGLYKARECEMASVIWACMFKNGFQPDIISYNITLKGLCSC 652

Query: 342 GK 343
           G+
Sbjct: 653 GR 654


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 149/295 (50%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I    + +    ++ +L ++K  + +VP       +I    R   +E A ++F+ M
Sbjct: 414 YNNMIEGYLKEQNTSRVKDLLSEMKK-SNLVPTAYTCGMIINGLCRHGSIEDASRVFEIM 472

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
            S  V+     + TL+   +  G+      + ++M+K  V PD   YN +I G   SR++
Sbjct: 473 VSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKM 532

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E+A     EM++R L+P + T+G LI+G C    +  A +  ++++    + P+  V  +
Sbjct: 533 EEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGC-GIAPNDVVCTA 591

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G C  G  + A  +   M+   +  D   YS+LI  L + G+      +L E  E+G
Sbjct: 592 LIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKG 651

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             P+  TYN++ISGFCK+     AF + + M  KG   N I+YN ++ GLCK G+
Sbjct: 652 LVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGE 706



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 142/295 (48%), Gaps = 5/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQMFDE 108
           ++L+I    +  +FDE        K +  +V   ++ CN ++    +A  LE   + ++ 
Sbjct: 169 FELLIDGYKKKGLFDEAVSFFLGAKRNGFVVG--LLCCNGLLSDLLKANKLELFWRFYNG 226

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIHGCVVSRR 167
           M   NV   V  +  L+N     G     K L F++ EK  SP   +YN++I G   +  
Sbjct: 227 MLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGE 286

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           +++A+++   M K+ L   + T+  LI G   + R  EA KL  + M    +KP    + 
Sbjct: 287 VDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEA-KLMLEEMFSKGLKPGHVAYT 345

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +LI G    G+   A  VKEEM+   ++++   Y++L+  + K G   +  A+L EM   
Sbjct: 346 ALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMV 405

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           G KP++ TYN +I G+ KE++      +L EM          +  +I+ GLC+ G
Sbjct: 406 GIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHG 460



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 129/272 (47%), Gaps = 3/272 (1%)

Query: 70  LHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL 129
           LH+      I P  I +  +I    +A  +ERA ++FD +    +      + T+++   
Sbjct: 678 LHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYC 737

Query: 130 TCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
             G L +   LF  M  K V PD+  Y+ LI GC      E A  +F E V++    T  
Sbjct: 738 KSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFAST-S 796

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           +   L+ G C   +V EA +L ED++  + VKPD   +  LI   C  G L  A     +
Sbjct: 797 SLNALMDGFCKSGKVIEANQLLEDMVDKH-VKPDHVTYTILIDYHCKTGFLKEAEQFFVD 855

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M +  +  +A  Y++L+S    AGR++E  A+  EM  +  +P+ VT++ +I    KE D
Sbjct: 856 MQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGD 915

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
                 ++D+M  KG   +    +V++  LC+
Sbjct: 916 HVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCR 947



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 129/266 (48%), Gaps = 5/266 (1%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           +VP    + ++I  + +   + +A Q+ + M    +   +  +N L+N     G+++R +
Sbjct: 652 LVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERAR 711

Query: 139 ELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           ELF  I  K ++ +A +Y  +I G   S  L  A+++FDEM  + + P    +  LI G 
Sbjct: 712 ELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGC 771

Query: 198 CLELRVDEALKL-KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
             E   ++AL L  E + + +          +L+ G C  G++  A  + E+MV   ++ 
Sbjct: 772 RKEGNTEKALSLFLESVQKGF---ASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKP 828

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           D   Y+ LI    K G   E      +M++R   PN++TY AL+SG+         F + 
Sbjct: 829 DHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALF 888

Query: 317 DEMGDKGCKANPISYNVILGGLCKDG 342
           DEM  K  + + ++++V++    K+G
Sbjct: 889 DEMIAKDIEPDGVTWSVMIDAHLKEG 914



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 131/294 (44%), Gaps = 37/294 (12%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145
           + ++I  + RA   +   ++  EM       ++  +N ++      G++D   EL ++M+
Sbjct: 239 YTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMD 298

Query: 146 KY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
           K  +  D  +Y+ILI G    +R  +A  + +EM  + L+P  V +  LI G   +    
Sbjct: 299 KKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSG 358

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           EA ++KE+ M    VK +   + +L+KG+C  G++  A  +  EM+   I+ D   Y+++
Sbjct: 359 EAFRVKEE-MLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNM 417

Query: 265 ISALFKAGRKNEFPAILKEMKER-----------------------------------GC 289
           I    K    +    +L EMK+                                    G 
Sbjct: 418 IEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGV 477

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           KPN+V Y  LI G  +E  F+ A  IL  M  KG + + + YN ++ GLCK  K
Sbjct: 478 KPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRK 531



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 143/327 (43%), Gaps = 38/327 (11%)

Query: 52  LIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111
           +II  L R    ++  ++  ++     + P  +I+  +I  + +    + A+++   M  
Sbjct: 451 MIINGLCRHGSIEDASRVF-EIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDK 509

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNILIHGCVVSRRLED 170
             VQ  V  +N+++       K++  K+ L +++E+ + P+  +Y  LIHG   S  ++ 
Sbjct: 510 KGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQV 569

Query: 171 AWKVFDEMVK-----------------------------------RRLQPTLVTFGTLIY 195
           A + F EM+                                    R + P + T+  LI+
Sbjct: 570 ADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIH 629

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           GL    ++  A++L  + +    + PD   + S+I G C  G +  A  + E M +  I 
Sbjct: 630 GLLRNGKLQGAMELLSEFLE-KGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGIS 688

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            +   Y++LI+ L KAG       +   +  +G   N+VTY  +I G+CK  +   AF +
Sbjct: 689 PNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRL 748

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
            DEM  KG   +   Y+ ++ G  K+G
Sbjct: 749 FDEMTLKGVPPDSFVYSALIDGCRKEG 775



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 133/300 (44%), Gaps = 36/300 (12%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P +++   +I  Y +      A  +F  M   +V   V+ ++ L++  L  GKL    
Sbjct: 582 IAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAM 641

Query: 139 ELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           EL  + +EK + PD  +YN +I G      +  A+++ + M ++ + P ++T+  LI GL
Sbjct: 642 ELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGL 701

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C    ++ A +L + I     +  +   +A++I G C  G LS A  + +EM    +  D
Sbjct: 702 CKAGEIERARELFDGIPG-KGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPD 760

Query: 258 AGIYSSLIS------------ALF----------------------KAGRKNEFPAILKE 283
           + +YS+LI             +LF                      K+G+  E   +L++
Sbjct: 761 SFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCKSGKVIEANQLLED 820

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M ++  KP+ VTY  LI   CK    + A     +M  +    N ++Y  +L G    G+
Sbjct: 821 MVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGR 880



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 8/157 (5%)

Query: 196 GLCLELRVDEALK---LKEDIMRVYNVKPDGQVFA-----SLIKGLCAVGELSLALGVKE 247
           G+  EL +D   K     E +      K +G V        L+  L    +L L      
Sbjct: 166 GVVFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYN 225

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
            M+   +  D   Y+ LI+A F+AG   E   +L EM+E+GC P+ VTYN +I G C+  
Sbjct: 226 GMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAG 285

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
           + + AF +   M  KG  A+  +Y++++ G  K  +C
Sbjct: 286 EVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRC 322



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 5/232 (2%)

Query: 91   GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VS 149
            GF    +++E A Q+ ++M   +V+     +  L++     G L   ++ F  M+K  + 
Sbjct: 804  GFCKSGKVIE-ANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLM 862

Query: 150  PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
            P+A +Y  L+ G  ++ R  + + +FDEM+ + ++P  VT+  +I     E    + LKL
Sbjct: 863  PNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKL 922

Query: 210  KEDIMRVY-NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
             +D+++   NV  +  V   LI  LC    +S  L V E++    + +     S+L+   
Sbjct: 923  VDDMLKKGGNVSKN--VCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCF 980

Query: 269  FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
             KAG+ +    +LK M      P+S   N LI+      D E A   L +M 
Sbjct: 981  HKAGKMDGAARVLKSMVRFKWVPDSTELNDLINVEQDSTDSENAGDFLKQMA 1032


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 134/269 (49%), Gaps = 2/269 (0%)

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           D  + P    +  ++  Y R      A  + D+M    ++ TV  +NTLL      G  D
Sbjct: 395 DWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFD 454

Query: 136 RMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
              +++ +M K  V+PD   Y+ L+ G       E A  ++ +++ R    + +TF T+I
Sbjct: 455 DALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMI 514

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
            GLC   ++ EA ++  D M+     PDG  + +LI G C    +  A  VK  M R+ I
Sbjct: 515 SGLCKMGKMVEAEEIF-DKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXI 573

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
                +Y+SLIS LFK+ R  E   +L EM  RG  PN VTY ALI G+CKE   + AF+
Sbjct: 574 SPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFS 633

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
              EM + G  AN I  + ++ GL + G+
Sbjct: 634 SYFEMTENGLSANIIICSTMVSGLYRLGR 662



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 172/388 (44%), Gaps = 63/388 (16%)

Query: 9   ACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQ 68
           A L  L+ +P  +L  F+  +   N         FR N+  Y  ++  L R +M+DE + 
Sbjct: 73  AVLRNLRLNPTASLGFFQFVSKQQN---------FRPNVKSYCKLVHILSRGRMYDETRA 123

Query: 69  ILHQL------KHDTRIVPKEII------------FCNVIGFYGRARLLERALQMFDEMS 110
            L+QL      K    ++  E++            F  ++  Y    L + AL +FD M 
Sbjct: 124 YLNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMG 183

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----------------------- 147
                 +++  N+LLN  +  G+      ++Q M +                        
Sbjct: 184 KCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVD 243

Query: 148 -------------VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
                        V P+  +Y+ LI+G V    +E A  V   M ++ +   +VT+  LI
Sbjct: 244 EAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLI 303

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
            G C + ++DEA K+   +     + PD + +  LI G C  G++  A+ + +EM+R  +
Sbjct: 304 KGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGL 363

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           + +  I +SLI+   K G  +E   ++  M +   KP+S +YN L+ G+C+E     AF 
Sbjct: 364 KTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFN 423

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDG 342
           + D+M  +G +   ++YN +L GLC+ G
Sbjct: 424 LCDKMLQEGIEPTVLTYNTLLKGLCRVG 451



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 145/294 (49%), Gaps = 6/294 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I+ L +++   E   +L ++     + P  + +  +I  + +  +L++A   + EM
Sbjct: 580 YNSLISGLFKSRRLVEXTDLLTEMGIRG-LTPNIVTYGALIDGWCKEGMLDKAFSSYFEM 638

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
           +   +   +   +T+++     G++D    L Q M  +   PD   +   +   +    +
Sbjct: 639 TENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPD---HECFLKSDIRYAAI 695

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           +      DE  K  L P  + +   I GLC   +VD+A +    ++ +    PD   + +
Sbjct: 696 QKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFS-MLSLKGFVPDNFTYCT 754

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G  A G +  A  +++EM+R  +  +   Y++LI+ L K+   +    +  ++ ++G
Sbjct: 755 LIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKG 814

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             PN VTYN LI G+CK  + +AAF + D+M ++G   + ++Y+ ++ GLCK G
Sbjct: 815 LFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHG 868



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 135/264 (51%), Gaps = 3/264 (1%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           IVP   +   ++  + +   ++ A     +M +  V+  +  +++L+N  ++ G ++  K
Sbjct: 222 IVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAK 281

Query: 139 ELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYG 196
            + + M EK VS +  +Y +LI G     ++++A KV   M +   L P    +G LI G
Sbjct: 282 GVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDG 341

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
            C   ++D+A++L ++++R+  +K +  +  SLI G C  GE+  A GV   MV   ++ 
Sbjct: 342 YCRTGKIDDAVRLLDEMLRL-GLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKP 400

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           D+  Y++L+    + G  +E   +  +M + G +P  +TYN L+ G C+   F+ A  I 
Sbjct: 401 DSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIW 460

Query: 317 DEMGDKGCKANPISYNVILGGLCK 340
             M   G   + + Y+ +L GL K
Sbjct: 461 HLMMKXGVAPDEVGYSTLLDGLFK 484



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 141/303 (46%), Gaps = 14/303 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            +L Y+ ++  L R   FD+  QI H L     + P E+ +  ++    +    E A  +
Sbjct: 436 TVLTYNTLLKGLCRVGAFDDALQIWH-LMMKXGVAPDEVGYSTLLDGLFKMENFEGASTL 494

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           + ++ +     +   FNT+++     GK+   +E+F  M+    SPD  +Y  LI G   
Sbjct: 495 WKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCK 554

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  +  A+KV   M +  + P++  + +LI GL    R+ E   L  + M +  + P+  
Sbjct: 555 ASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTE-MGIRGLTPNIV 613

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G C  G L  A     EM  + +  +  I S+++S L++ GR +E   ++++M
Sbjct: 614 TYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKM 673

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA----NPISYNVILGGLCK 340
            + G  P+          F K +   AA   + +  D+ CK     N I YN+ + GLCK
Sbjct: 674 VDHGFFPDH-------ECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCK 726

Query: 341 DGK 343
            GK
Sbjct: 727 TGK 729



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 2/179 (1%)

Query: 132 GKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           GK+D  +  F ++  K   PD  +Y  LIHG   +  +++A+++ DEM++R L P +VT+
Sbjct: 728 GKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTY 787

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
             LI GLC    VD A +L   + +   + P+   + +LI G C +G +  A  +K++M+
Sbjct: 788 NALINGLCKSENVDRAQRLFHKLHQ-KGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMI 846

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
            + I      YS+LI+ L K G       +L +M + G     + Y  L+ G  K  ++
Sbjct: 847 EEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGGFKTSNY 905



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 118/248 (47%), Gaps = 39/248 (15%)

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKYVS--PDACSYNILIHGCVVSR-RLEDAWK----- 173
           N  LNP  + G        FQ + K  +  P+  SY  L+H  ++SR R+ D  +     
Sbjct: 77  NLRLNPTASLG-------FFQFVSKQQNFRPNVKSYCKLVH--ILSRGRMYDETRAYLNQ 127

Query: 174 -------------VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                        ++DE+V    +     F   ++ + L++ V++ L  K  +    N+ 
Sbjct: 128 LVDLCKFKDRGNVIWDELVGVYRE---FAFSPTVFDMILKVYVEKGLT-KNALYVFDNMG 183

Query: 221 PDGQVFA-----SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
             G++ +     SL+  L   GE   A  V ++M+R  I  D  + S +++A  K G+ +
Sbjct: 184 KCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVD 243

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E    +K+M+  G +PN VTY++LI+G+    D EAA  +L  M +KG   N ++Y +++
Sbjct: 244 EAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLI 303

Query: 336 GGLCKDGK 343
            G CK  K
Sbjct: 304 KGYCKQCK 311



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 106/240 (44%), Gaps = 38/240 (15%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y++ I  L +    D+ ++    L      VP    +C +I  Y  A  ++ A ++
Sbjct: 713 NNIVYNIAIAGLCKTGKVDDARRFFSMLSLKG-FVPDNFTYCTLIHGYSAAGNVDEAFRL 771

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
            DEM                                  + + + P+  +YN LI+G   S
Sbjct: 772 RDEM----------------------------------LRRGLVPNIVTYNALINGLCKS 797

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             ++ A ++F ++ ++ L P +VT+ TLI G C    +D A KLK+ ++    + P    
Sbjct: 798 ENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIE-EGISPSVVT 856

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF--PAILKE 283
           +++LI GLC  G++  ++ +  +M++  ++     Y +L+   FK    NE   P  LK+
Sbjct: 857 YSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGGFKTSNYNEMSKPEALKQ 916


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 148/293 (50%), Gaps = 3/293 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ ++ +  R   F E ++I  ++     +VP  + F ++I  + R R L++AL  F +M
Sbjct: 226 YNTLLVESCRRDNFSEAKEIFGEMLRQG-VVPDLVSFSSLIAVFSRNRHLDQALVYFRDM 284

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGK-LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168
             F +      +  L++     G  L+ +K   +++E+    D  +YN +++G    + L
Sbjct: 285 KKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKML 344

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            DA K+FDEMV+R   P   TF TLI+G C +  + +AL L    M   N+KPD   + +
Sbjct: 345 TDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLF-GTMTQRNIKPDIVAYNT 403

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G C VGE+  A  + + M+  KI  +   Y  LI+A    G  +E   +   M E+G
Sbjct: 404 LIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKG 463

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            KP  VT N +I G+C+  D   A   L  M  KG   + ISYN ++ G  ++
Sbjct: 464 IKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVRE 516



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 154/299 (51%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+   ++++  L +   FD+++  L +++ +  I    + +  +IG Y R  LLE A ++
Sbjct: 117 NVYTLNIMVNALCKDGKFDDVKSFLSEMEGNG-IYADMVTYNTLIGAYCREGLLEEAFEI 175

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNILIHGCVV 164
            + M+   ++ ++  +N ++N     G+  R K  L +++   +SPD  +YN L+     
Sbjct: 176 MNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCR 235

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
                +A ++F EM+++ + P LV+F +LI        +D+AL    D M+ + + PD  
Sbjct: 236 RDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRD-MKKFGLVPDNV 294

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++  L+ G C  G +  AL +++EM+     +D   Y+++++ L K     +   +  EM
Sbjct: 295 IYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEM 354

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ERG  P+  T+  LI G C++ +   A ++   M  +  K + ++YN ++ G CK G+
Sbjct: 355 VERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGE 413



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 146/281 (51%), Gaps = 7/281 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ I+  L + KM  +  ++  ++  +   +P    F  +I  + +   + +AL +
Sbjct: 327 DVIAYNTILNGLCKEKMLTDADKLFDEMV-ERGALPDFYTFTTLIHGHCQDGNMTKALSL 385

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           F  M+  N++  +  +NTL++     G++++  EL+  ++ + + P+  +Y ILI+    
Sbjct: 386 FGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCS 445

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY--NVKPD 222
              + +A++++D M+++ ++PTLVT  T+I G C   R  ++ K  E + R+    V PD
Sbjct: 446 VGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYC---RSGDSSKADEFLGRMIAKGVAPD 502

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + +LI G      +  A     +M ++ +  D   Y+ +++   + GR  E   +L+
Sbjct: 503 HISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLR 562

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +M E+G  P+  TY ALI+G   +++   AF   DEM  +G
Sbjct: 563 KMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRG 603



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 122/244 (50%), Gaps = 2/244 (0%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDAC 153
           + ++L  A ++FDEM           F TL++     G + +   LF  M ++ + PD  
Sbjct: 340 KEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIV 399

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN LI G      +E A +++D M+ R++ P  +T+G LI   C    V EA +L  D+
Sbjct: 400 AYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLW-DV 458

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M    +KP      ++IKG C  G+ S A      M+   +  D   Y++LI+   +   
Sbjct: 459 MIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDN 518

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            ++    + +M++ G  P+ +TYN +++GFC++   + A  +L +M +KG   +  +Y  
Sbjct: 519 MDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTA 578

Query: 334 ILGG 337
           ++ G
Sbjct: 579 LING 582



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 17/203 (8%)

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC-----------LELRVD-E 205
           ++H  V SRRL DA  +   M++R     +     L+  +C           L +R   +
Sbjct: 1   MVHVFVRSRRLSDAQALILRMIRRSGVSRVEVVEALVSSMCGNCGTNNLVFDLLIRTYVQ 60

Query: 206 ALKLKEDIMRVYNVKPDGQVFA-----SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
           A KL+E       ++  G + +     SL+ GL  +  + LA  V  E+VR  IE++   
Sbjct: 61  ARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYT 120

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
            + +++AL K G+ ++  + L EM+  G   + VTYN LI  +C+E   E AF I++ M 
Sbjct: 121 LNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMA 180

Query: 321 DKGCKANPISYNVILGGLCKDGK 343
           DKG K +  +YN I+ GLCK G+
Sbjct: 181 DKGLKPSLFTYNAIINGLCKKGR 203



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 130/297 (43%), Gaps = 37/297 (12%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
              ++F  +I  Y +AR L    + F  + S    +++   N+LL   +    ++   E+
Sbjct: 46  TNNLVFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEV 105

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
             +++   +  +  + NI+++      + +D      EM    +   +VT+ TLI   C 
Sbjct: 106 HREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCR 165

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV-------------- 245
           E  ++EA ++    M    +KP    + ++I GLC  G  + A G+              
Sbjct: 166 EGLLEEAFEIMNS-MADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTT 224

Query: 246 ------------------KE---EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
                             KE   EM+R  +  D   +SSLI+   +    ++     ++M
Sbjct: 225 TYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDM 284

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           K+ G  P++V Y  L+ G+C+  +   A  I DEM ++GC  + I+YN IL GLCK+
Sbjct: 285 KKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKE 341



 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 1/108 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           + P  I +  +I  + R   +++A    ++M    +   +  +N ++N     G++   +
Sbjct: 499 VAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAE 558

Query: 139 -ELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
             L +++EK ++PD  +Y  LI+G V    L +A++  DEM++R   P
Sbjct: 559 LVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAP 606


>gi|302810233|ref|XP_002986808.1| hypothetical protein SELMODRAFT_41291 [Selaginella moellendorffii]
 gi|300145462|gb|EFJ12138.1| hypothetical protein SELMODRAFT_41291 [Selaginella moellendorffii]
          Length = 587

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 144/294 (48%), Gaps = 13/294 (4%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L +A  F++M  ++ ++     +     IF  VI  YGRA  ++ A+     M
Sbjct: 3   YARVIVGLAKAWQFEQMWDLMEEMDKRAHLHIPAGIFSTVIKCYGRAGDVKGAVATLKRM 62

Query: 110 SS-FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168
           S  F+     + +  L+   +  G+ D    +++ M      D  +YN++  GC  S RL
Sbjct: 63  SDDFSCTPVARTYEALIRVVMDAGQCDTALSVYRAM-----ADRVTYNLVALGCCRSGRL 117

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY--NVKPDGQVF 226
           +   +++ EM  R  + + + F +L+ GLC   R DEA     D++     +   D    
Sbjct: 118 DTCVEIYQEMRSRGFRVSHLAFNSLVCGLCKAGRTDEAW----DVLGKSRPSACADAVTL 173

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
           +++I  LC+  +   AL +   M   ++  +   Y+S+I  L KAGR++    +L++M+ 
Sbjct: 174 STVIHALCS-SDCDRALELMRAMQAQRVPPNVVTYTSVIDGLCKAGRRDAAMVLLQQMQA 232

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            GC PN+VTYN LI   CK    E AF +L  M  KGC  +  + N ++ G+CK
Sbjct: 233 AGCSPNTVTYNCLIHSLCKAGKLEDAFALLRSMPSKGCTPSINNKNTLVSGICK 286



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 139/328 (42%), Gaps = 38/328 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L +A   D    +L Q++      P  + +  +I    +A  LE A  +
Sbjct: 203 NVVTYTSVIDGLCKAGRRDAAMVLLQQMQ-AAGCSPNTVTYNCLIHSLCKAGKLEDAFAL 261

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF---------QIMEKYVS------- 149
              M S     ++   NTL++       ++R +  F         + M++  S       
Sbjct: 262 LRSMPSKGCTPSINNKNTLVSGICKHAIMERQRREFGKLGQALFSEAMQESCSVEEDTLA 321

Query: 150 ----------------PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
                           PD  +Y+I+IH    + ++ +A +V+  MVKR  Q   VT+ + 
Sbjct: 322 LLYTCLEHMFGSNGDRPDKRTYSIVIHFLCKADKVLEAARVWRAMVKRLGQADAVTYNSF 381

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           +YGL     + EA +L  +I      KP    ++ L+      G+LS    V +      
Sbjct: 382 LYGLLKLNNLSEAARLFSEI-----DKPTLVSYSLLVHAYFKAGDLSKVEEVYQAATGQG 436

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           +  D  +Y+ ++  L  A ++     +  EM   G  P+  TY  LI   C++   +AA 
Sbjct: 437 LRPDLALYNIVLHGLSGAKQEAGVAHLWAEMLNNGVSPSVATYTILIHALCRDNRLQAAR 496

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKD 341
            I+D+M  +G   + I+YN +L  LCK+
Sbjct: 497 QIIDKMKGQGVLPDAITYNTLLHCLCKN 524



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 95/253 (37%), Gaps = 63/253 (24%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKR-RLQPTLVTFGTLI--YGLCLELR--VDEALK 208
           SY  +I G   + + E  W + +EM KR  L      F T+I  YG   +++  V    +
Sbjct: 2   SYARVIVGLAKAWQFEQMWDLMEEMDKRAHLHIPAGIFSTVIKCYGRAGDVKGAVATLKR 61

Query: 209 LKEDI-------------------------MRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
           + +D                          + VY    D   +  +  G C  G L   +
Sbjct: 62  MSDDFSCTPVARTYEALIRVVMDAGQCDTALSVYRAMADRVTYNLVALGCCRSGRLDTCV 121

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK------------- 290
            + +EM      +    ++SL+  L KAGR +E   +L + +   C              
Sbjct: 122 EIYQEMRSRGFRVSHLAFNSLVCGLCKAGRTDEAWDVLGKSRPSACADAVTLSTVIHALC 181

Query: 291 --------------------PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
                               PN VTY ++I G CK    +AA  +L +M   GC  N ++
Sbjct: 182 SSDCDRALELMRAMQAQRVPPNVVTYTSVIDGLCKAGRRDAAMVLLQQMQAAGCSPNTVT 241

Query: 331 YNVILGGLCKDGK 343
           YN ++  LCK GK
Sbjct: 242 YNCLIHSLCKAGK 254



 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 73/159 (45%), Gaps = 1/159 (0%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           +A   +  R +L  Y++++  L  AK    +  +  ++ ++  + P    +  +I    R
Sbjct: 430 QAATGQGLRPDLALYNIVLHGLSGAKQEAGVAHLWAEMLNNG-VSPSVATYTILIHALCR 488

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSY 155
              L+ A Q+ D+M    V      +NTLL+       LD    L + M+++ S    ++
Sbjct: 489 DNRLQAARQIIDKMKGQGVLPDAITYNTLLHCLCKNELLDEAHLLLREMKQHCSYTPATW 548

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           NI+I G +  R L  A ++F ++++    P  +T+   +
Sbjct: 549 NIVIDGILEQRDLGVAQRIFSQLIRDGFFPAHLTYDAFV 587


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 154/330 (46%), Gaps = 40/330 (12%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS- 111
           +I     ++ F  + Q+L ++K + R++  E IF  +    G+A L   A+  F  M++ 
Sbjct: 71  LIENYATSREFHFIHQVLDRMKREGRVL-TETIFILIFKACGKAHLPGEAVNFFHRMAND 129

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRM----KELFQIMEKYVSPDACSYNILIHGCVVSRR 167
            + + TVK FN++LN  +  G           +F    K   P+  +YN++I       +
Sbjct: 130 LHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQ 189

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR--------VYNV 219
           ++ A   F EM  +   P + T+ TL+ GLC E RVDEA+ L +++           +NV
Sbjct: 190 IDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNV 249

Query: 220 --------------------------KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
                                      P+   + +LI GLC  G+L  AL + E+MV  K
Sbjct: 250 LIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSK 309

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
              +   Y ++I+ L K  R  +   IL  M+ERG K N   Y++LISG  KE   E A 
Sbjct: 310 CVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAV 369

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +  EM +KGCK N + Y   + GLC+D K
Sbjct: 370 RLWKEMAEKGCKPNVVVYGAFIDGLCRDEK 399



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 149/304 (49%), Gaps = 3/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F+ NLL Y+LII  L +    D       ++       P    +  ++    + R ++
Sbjct: 168 KGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKN-CNPDVFTYSTLMNGLCKERRVD 226

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            A+ + DEM +         FN L++     G L R  +L   M  K   P+  +YN LI
Sbjct: 227 EAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLI 286

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           HG  +  +L+ A  + ++MV  +  P  VT+GT+I GL  + R ++ + +    M     
Sbjct: 287 HGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMS-MEERGQ 345

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           K +  +++SLI GL   G+   A+ + +EM     + +  +Y + I  L +  + +E   
Sbjct: 346 KANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAED 405

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           IL+EM  +G  PN+ TY++L+ GF K+ D + A  +  EM  +  + N +  +V+L GLC
Sbjct: 406 ILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLC 465

Query: 340 KDGK 343
           + G+
Sbjct: 466 ESGR 469



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 153/346 (44%), Gaps = 52/346 (15%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           PLK    ++  Y  ++  L + +  DE   +L +++ +   +P  + F  +I    +   
Sbjct: 201 PLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEG-CLPNPVTFNVLIDALSKNGD 259

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACS 154
           L RA ++ D M           +NTL++     GKLD+      ++EK VS    P+  +
Sbjct: 260 LSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKA---LSLLEKMVSSKCVPNQVT 316

Query: 155 YNILIHGCVVSRRLED-----------------------------------AWKVFDEMV 179
           Y  +I+G V  RR ED                                   A +++ EM 
Sbjct: 317 YGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMA 376

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK---PDGQVFASLIKGLCAV 236
           ++  +P +V +G  I GLC + + DEA    EDI++    K   P+   ++SL+KG    
Sbjct: 377 EKGCKPNVVVYGAFIDGLCRDEKPDEA----EDILQEMLSKGFLPNAFTYSSLMKGFFKK 432

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           G+   A+ V +EM+   +  +    S L++ L ++GR  E   +   M   G KP+ V Y
Sbjct: 433 GDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAY 492

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANP--ISYNVILGGLCK 340
           +++I G C     +    +  EM  +  K+ P  ++YN++   LC+
Sbjct: 493 SSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCR 538



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 22/186 (11%)

Query: 142 QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
           ++M + +  +    ++L++G   S RL +A  V+  M+   L+P +V + ++I GLC   
Sbjct: 444 EMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVG 503

Query: 202 RVDEALKLKEDIM-RVYNVKPDGQVFASLIKGLCAVGEL------------------SLA 242
            VD+ LKL  ++  +    +PD   +  L   LC    L                  SL 
Sbjct: 504 SVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLT 563

Query: 243 LGVKEEMVRDKIE--MDAGIY-SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             +  E +R++I    D  ++   L+  L K  RK     I++EM  R   P   T++ +
Sbjct: 564 CNIFLETLRERINPPQDGRLFLDELVVRLLKRERKLSALRIVEEMLLRFLPPEPSTWSRV 623

Query: 300 ISGFCK 305
           I   CK
Sbjct: 624 IQRTCK 629


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 159/321 (49%), Gaps = 41/321 (12%)

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM-SSFNVQMTVKFF 121
           F  ++++L +++ + R++  E  F  V   YG+A L E+A+ +F  M   F  + +VK F
Sbjct: 93  FASVEKLLSRIRLENRVII-ERSFIVVFRAYGKAHLPEKAVDLFHRMVDEFRCKRSVKSF 151

Query: 122 NTLLNPKLTCGKLDRMKELFQI-----MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFD 176
           N++LN  +  G   R  E +       M   +SP+  S+N++I        ++ A +VF 
Sbjct: 152 NSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLGFVDRAIEVFR 211

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR--------VYNVKPDG----- 223
            M +++  P   T+ TL+ GLC E R+DEA+ L +++          +YNV  DG     
Sbjct: 212 GMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKG 271

Query: 224 ---------------------QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
                                  + +LI GLC  G+L  A+ + E MV  K   +   Y 
Sbjct: 272 DLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYG 331

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           +LI+ L K  R  +   +L  M+ERG + N   Y+ LISG  KE   E A T+  +M +K
Sbjct: 332 TLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEK 391

Query: 323 GCKANPISYNVILGGLCKDGK 343
           GC+ N + Y+ ++ GLC++GK
Sbjct: 392 GCRPNIVVYSAVIDGLCREGK 412



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 145/299 (48%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N L ++L+I  L +    D   ++   +  + + +P    +C ++    +   ++ A+ +
Sbjct: 186 NGLSFNLVIKALCKLGFVDRAIEVFRGMP-EKKCLPDGYTYCTLMDGLCKEERIDEAVLL 244

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            DEM S     +   +N L++     G L R+ +L   M  K   P+  +YN LIHG  +
Sbjct: 245 LDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCL 304

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L+ A  + + MV  +  P  VT+GTLI GL  + R  +  +L    M     + +  
Sbjct: 305 KGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLIS-MEERGYRLNQH 363

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           +++ LI GL   G+   A+ + ++M       +  +YS++I  L + G+ NE   IL  M
Sbjct: 364 IYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGM 423

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              GC PN  TY++L+ GF K    E A  +  EM + GC  N   Y+V++ GLC  G+
Sbjct: 424 ISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGR 482



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 141/308 (45%), Gaps = 12/308 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y+ +I  L      D+   +L ++   ++ +P ++ +  +I    + R      ++
Sbjct: 291 NEVTYNTLIHGLCLKGKLDKAVSLLERMV-SSKCIPNDVTYGTLINGLVKQRRAMDGARL 349

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
              M     ++    ++ L++     GK +    L++ M EK   P+   Y+ +I G   
Sbjct: 350 LISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCR 409

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +  +A ++ + M+     P + T+ +L+ G       +EA+++  + M       +  
Sbjct: 410 EGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWRE-MDETGCSRNEF 468

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++ LI GLC VG +  A+ V  +M+   I+ D   YSS+I  L   G  +    +  EM
Sbjct: 469 CYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEM 528

Query: 285 ---KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL--- 338
              +E   +P+ VTYN L+ G C ++D   A  +L+ M D+GC  + I+ N  L  L   
Sbjct: 529 LCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLSEK 588

Query: 339 ---CKDGK 343
              C++G+
Sbjct: 589 SDSCEEGR 596


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 177/357 (49%), Gaps = 26/357 (7%)

Query: 1   KPTSSIRLACLPRLQKDPKL--ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLG 58
           KP   I  A +  L KD +   A  LF       ++ +   + P   NL  Y+ +I    
Sbjct: 245 KPNVVIYSAIIDGLWKDGRQTDAQNLF-------SEMQEKGISP---NLFTYNCMINGFC 294

Query: 59  RAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV 118
            +  + E Q++L ++  + ++ P  + F  +I    +      A ++++EM    +    
Sbjct: 295 SSGRWSEAQRLLREM-FERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNT 353

Query: 119 KFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
             +N++++      +LD  + +F +M  K  SPD  +++ILI G   ++R++D  K+  E
Sbjct: 354 ITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHE 413

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M +R L    +T+ TLI+G C    ++ AL L ++++    V P+     +L+ GLC  G
Sbjct: 414 MSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMIS-SGVCPNVVTCNTLLDGLCNNG 472

Query: 238 ELSLALGVKEEMVRDKIEMDAG-----------IYSSLISALFKAGRKNEFPAILKEMKE 286
           +L  AL + + M + K+++DA             Y+ LI  L   G+ +E   + +EM  
Sbjct: 473 KLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPH 532

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           RG  P+++TYN++I G CK+   + A  + D MG KG   + +++  ++ G CK G+
Sbjct: 533 RGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGR 589



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 138/283 (48%), Gaps = 14/283 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ + ++I     AK  D+  ++LH++     +V   I +  +I  + +   L  AL +
Sbjct: 387 DVITFSILIDGYCGAKRVDDGMKLLHEMSRRG-LVANTITYTTLIHGFCQLGNLNAALDL 445

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY------------VSPDAC 153
             EM S  V   V   NTLL+     GKL    E+F++M+K             V PD  
Sbjct: 446 LQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQ 505

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YNILI G +   +  +A ++++EM  R L P  +T+ ++I GLC + R+DEA ++  D 
Sbjct: 506 TYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMF-DS 564

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M      PD   F +LI G C VG +   L V  EM R  I  +A  Y +LI    + G 
Sbjct: 565 MGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGN 624

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
            N    I +EM   G  P+++T   +++G   +E+ + A   L
Sbjct: 625 INGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVQCL 667



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 141/306 (46%), Gaps = 40/306 (13%)

Query: 70  LHQLKHDTRIVPKEII-FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           LH+ K + R +P  I  F  +I  +     L  AL  F +++      ++  F+TLL+  
Sbjct: 98  LHR-KMEMRRIPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHG- 155

Query: 129 LTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
             C + DR+ E      +   P+  ++  L++G     R+ +A  + D MV+  LQP  +
Sbjct: 156 -LCVE-DRVSEALHFFHQICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQI 213

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGL--------------- 233
           T+GT++ G+C       AL L   +  V  +KP+  +++++I GL               
Sbjct: 214 TYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSE 273

Query: 234 --------------------CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
                               C+ G  S A  +  EM   K+  D   +S LI+AL K G+
Sbjct: 274 MQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGK 333

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   +  EM  RG  PN++TYN++I GF K+   +AA  +   M  KGC  + I++++
Sbjct: 334 FFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSI 393

Query: 334 ILGGLC 339
           ++ G C
Sbjct: 394 LIDGYC 399



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 137/305 (44%), Gaps = 14/305 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y+ +I    +    D  +++ + L       P  I F  +I  Y  A+ ++  +++
Sbjct: 352 NTITYNSMIDGFSKQNRLDAAERMFY-LMATKGCSPDVITFSILIDGYCGAKRVDDGMKL 410

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
             EMS   +      + TL++     G L+   +L Q ++   V P+  + N L+ G   
Sbjct: 411 LHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCN 470

Query: 165 SRRLEDAWKVFDEMVKRRL-----------QPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           + +L+DA ++F  M K ++           +P + T+  LI GL  E +  EA +L E+ 
Sbjct: 471 NGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEE- 529

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M    + PD   + S+I GLC    L  A  + + M       D   +++LI+   K GR
Sbjct: 530 MPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGR 589

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             +   +  EM  RG   N++TY  LI GFC+  +   A  I  EM   G   + I+   
Sbjct: 590 VGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRN 649

Query: 334 ILGGL 338
           +L GL
Sbjct: 650 MLTGL 654



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 3/181 (1%)

Query: 19  KLALQLFKNPNPNPNDTEA-HPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 77
           K AL++FK    +  D +A HP      ++  Y+++I  L     F E +++  ++ H  
Sbjct: 475 KDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRG 534

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
            +VP  I + +VI    +   L+ A QMFD M S      V  F TL+N     G++   
Sbjct: 535 -LVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDG 593

Query: 138 KELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
            E+F ++  + +  +A +Y  LIHG      +  A  +F EM+   + P  +T   ++ G
Sbjct: 594 LEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTG 653

Query: 197 L 197
           L
Sbjct: 654 L 654



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 5/177 (2%)

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
           + L+DA  +F  MV+ R  P ++ F  L+  +    R D  + L    M +  +  +   
Sbjct: 55  KGLDDAIDLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRK-MEMRRIPCNIYS 113

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F  LIK  C+  +L  AL    ++ +         +S+L+  L    R +E      ++ 
Sbjct: 114 FTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQI- 172

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
              CKPN + +  L++G C+E     A  +LD M + G + N I+Y  I+ G+CK G
Sbjct: 173 ---CKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMG 226


>gi|42573413|ref|NP_974803.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122214363|sp|Q3E9F0.1|PP392_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g18475
 gi|110737103|dbj|BAF00503.1| hypothetical protein [Arabidopsis thaliana]
 gi|332005185|gb|AED92568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 506

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 174/337 (51%), Gaps = 14/337 (4%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L + ++DP+  L +F          +A   K F +N   Y +++  L R K F  +  IL
Sbjct: 62  LMKRERDPQGVLDIF---------NKASQQKGFNHNNATYSVLLDNLVRHKKFLAVDAIL 112

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF-NVQMTVKFFNTLLNPKL 129
           HQ+K++T    +E +F N++  + R+ L ++ ++MF+ +     V+ ++   +T LN  +
Sbjct: 113 HQMKYET-CRFQESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKPSLNAISTCLNLLI 171

Query: 130 TCGKLDRMKELFQIMEKYVS--PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ-PT 186
             G+++  ++L    +  +   P+ C +NIL+     +  +  A+ V +EM +  +  P 
Sbjct: 172 DSGEVNLSRKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISYPN 231

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
            +T+ TL+  L    R  EA++L ED++    + PD   F  +I G C  GE+  A  + 
Sbjct: 232 SITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKIL 291

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           + M ++    +   YS+L++   K G+  E      E+K+ G K ++V Y  L++ FC+ 
Sbjct: 292 DFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRN 351

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + + A  +L EM    C+A+ ++YNVIL GL  +G+
Sbjct: 352 GETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGR 388



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 134/278 (48%), Gaps = 5/278 (1%)

Query: 69  ILHQLKHDTRIVPKEIIFCNVIG-FYGRARLLERALQMFDEM-SSFNVQMTVKFFNTLLN 126
           ++ ++K      P  I +  ++   +  +R  E A+++F++M S   +      FN ++N
Sbjct: 218 VVEEMKRSGISYPNSITYSTLMDCLFAHSRSKE-AVELFEDMISKEGISPDPVTFNVMIN 276

Query: 127 PKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
                G+++R K++   M+K   +P+  +Y+ L++G     ++++A + FDE+ K  L+ 
Sbjct: 277 GFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKL 336

Query: 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
             V + TL+   C     DEA+KL  + M+    + D   +  +++GL + G    AL +
Sbjct: 337 DTVGYTTLMNCFCRNGETDEAMKLLGE-MKASRCRADTLTYNVILRGLSSEGRSEEALQM 395

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
            ++   + + ++ G Y  +++AL   G   +    L  M ERG  P+  T+N L+   C+
Sbjct: 396 LDQWGSEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELVVRLCE 455

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               E    +L      G    P S+  ++  +CK+ K
Sbjct: 456 SGYTEIGVRVLIGFLRIGLIPGPKSWGAVVESICKERK 493


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 149/295 (50%), Gaps = 4/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ II+ L +A   +E    L +++    + P  + F   I  Y +   +  A + FDEM
Sbjct: 422 YNAIISCLSKAGKMEEASTYLLEIQ-GRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEM 480

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
               +      +  L+N     G L     +F+ +    V PD  + +  IHG + + R+
Sbjct: 481 LDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRV 540

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           ++A KVF E+ ++ L P + T+ +LI G C +  V++A +L  D M +  + P+  ++ +
Sbjct: 541 QEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFEL-HDEMCLKGIAPNIFIYNA 599

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ GLC  G++  A  + + M    +E D+  YS++I    K+    E  ++  EM  +G
Sbjct: 600 LVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKG 659

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +P+S  YNAL+ G CKE D E A  +  EM  KG  A  +S+N ++ G CK  K
Sbjct: 660 VQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCK 713



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 150/331 (45%), Gaps = 38/331 (11%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           + Y  +I  L   K      ++L ++   + + P  +++  +I  Y     +E A ++ D
Sbjct: 350 VSYGAMINGLCHCKDLSLANKLLEKMTF-SGLKPNVVVYSTLIMGYASEGRIEEARRLLD 408

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNILIHGCVVSR 166
            MS   V   +  +N +++     GK++     L +I  + + PDA ++   I G   + 
Sbjct: 409 GMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTG 468

Query: 167 RLEDAWKVFDEMVKRRLQPT-----------------------------------LVTFG 191
           ++ +A K FDEM+   L P                                    + T  
Sbjct: 469 KMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCS 528

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
             I+GL    RV EALK+  + ++   + PD   ++SLI G C  GE+  A  + +EM  
Sbjct: 529 AFIHGLLKNGRVQEALKVFSE-LKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCL 587

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
             I  +  IY++L+  L K+G       +   M E+G +P+SVTY+ +I G+CK E+   
Sbjct: 588 KGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAE 647

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           AF++  EM  KG + +   YN ++ G CK+G
Sbjct: 648 AFSLFHEMPSKGVQPHSFVYNALVHGCCKEG 678



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 150/288 (52%), Gaps = 9/288 (3%)

Query: 56  KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ 115
           K GR +   E  ++  +LK +  +VP    + ++I  + +   +E+A ++ DEM    + 
Sbjct: 536 KNGRVQ---EALKVFSELK-EKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIA 591

Query: 116 MTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKV 174
             +  +N L++     G + R ++LF  M EK + PD+ +Y+ +I G   S  + +A+ +
Sbjct: 592 PNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSL 651

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-KEDIMRVYNVKPDGQVFASLIKGL 233
           F EM  + +QP    +  L++G C E  +++A+ L +E + + +        F +LI G 
Sbjct: 652 FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS---FNTLIDGY 708

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           C   ++  A  + +EM+  +I  D   Y+++I    KAG+  E   + KEM+ER    ++
Sbjct: 709 CKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDT 768

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           VTY +L+ G+ K       F + ++M  KG K + ++Y +++   CK+
Sbjct: 769 VTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKE 816



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 146/298 (48%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y +I   L RAK  +E +    +++  T + P       +I  + R   ++  L++
Sbjct: 208 NTYTYTIITAGLCRAKRMNEAKLTFEEMQK-TGLKPDYNACSALIDGFMREGDIDEVLRI 266

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            D M S  + + +  +N L++     GK+++  E+ + M      P++ ++ +LI G   
Sbjct: 267 KDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCR 326

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +  A ++ DEM KR L P+ V++G +I GLC    +  A KL E  M    +KP+  
Sbjct: 327 EHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEK-MTFSGLKPNVV 385

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           V+++LI G  + G +  A  + + M    +  D   Y+++IS L KAG+  E    L E+
Sbjct: 386 VYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEI 445

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + RG KP++VT+ A I G+ K      A    DEM D G   N   Y V++ G  K G
Sbjct: 446 QGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAG 503



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 139/312 (44%), Gaps = 19/312 (6%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDT-----------------RIVPKEIIFCNVIGF 92
           +D++I    R  M DE   +    K+D+                  +VP    +  +   
Sbjct: 159 FDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLRSMGEKGLVPNTYTYTIITAG 218

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-D 151
             RA+ +  A   F+EM    ++      + L++  +  G +D +  +  +M     P +
Sbjct: 219 LCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPIN 278

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +YN+LIHG     ++E A ++   M+    +P   TF  LI G C E  +  AL+L +
Sbjct: 279 LITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLD 338

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           + M   N+ P    + ++I GLC   +LSLA  + E+M    ++ +  +YS+LI      
Sbjct: 339 E-MEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASE 397

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           GR  E   +L  M   G  P+   YNA+IS   K    E A T L E+  +G K + +++
Sbjct: 398 GRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTF 457

Query: 332 NVILGGLCKDGK 343
              + G  K GK
Sbjct: 458 GAFILGYSKTGK 469



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 120/235 (51%), Gaps = 2/235 (0%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM- 144
           F  +I  Y ++  ++ A Q+F EM +  +      + T+++     GK++    LF+ M 
Sbjct: 701 FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQ 760

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
           E+ +  D  +Y  L++G     +  + + +F++MV + ++P  VT+G +IY  C E  + 
Sbjct: 761 ERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLV 820

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           EA KL+++++    +   G +   LI  LC   +L+ A  + +EM    ++      S+L
Sbjct: 821 EAFKLRDEVVG-KGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTL 879

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           + +  +AG+ +E   + + +K  G  P++ T   L++G   + D E A  ++ ++
Sbjct: 880 VRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQL 934


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 158/308 (51%), Gaps = 17/308 (5%)

Query: 44  RYNLLHYDLIITKLGRA-------KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           R +L+ ++ ++  L +A       KMFDEM +          + P  + +  ++  Y +A
Sbjct: 222 RPSLVTFNTVVNGLCKAGRMEDARKMFDEMAR--------EGLTPDGVSYNTLVSGYCKA 273

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSY 155
             L  AL +F EM+   V   V  F +L++     G L+R   L  Q+ E+ +  +  ++
Sbjct: 274 GCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTF 333

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
             LI G   +  L+DA     EM + R+QP++V +  LI G C   R+DEA +L  + M 
Sbjct: 334 TALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHE-ME 392

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
              +KPD   +++++ G C +G+   A  +  +M++  +  DA  YSSLI  L +  R  
Sbjct: 393 AKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLG 452

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +   + ++M + G +P+  TY  LI G CKE + + A ++ DEM  KG   + ++Y+V++
Sbjct: 453 DACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLI 512

Query: 336 GGLCKDGK 343
            GL K  +
Sbjct: 513 DGLSKSAR 520



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 124/237 (52%), Gaps = 2/237 (0%)

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVS 165
           D+M        V  +NTL+      G++D  + L  +M E  V P   ++N +++G   +
Sbjct: 179 DDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKA 238

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            R+EDA K+FDEM +  L P  V++ TL+ G C    + EAL +  + M    V PD   
Sbjct: 239 GRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAE-MAQKGVVPDVVT 297

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F SLI  +C  G L  A+ +  +M    + M+   +++LI    + G  ++    +KEM+
Sbjct: 298 FTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMR 357

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           E   +P+ V YN LI+G+CK    + A  ++ EM  KG K + ++Y+ IL G CK G
Sbjct: 358 ECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIG 414



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 111/197 (56%), Gaps = 5/197 (2%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           +P+  +YN L+     +  ++ A ++   M +  ++P+LVTF T++ GLC   R+++A K
Sbjct: 187 APNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARK 246

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           + +++ R   + PDG  + +L+ G C  G L  AL V  EM +  +  D   ++SLI A+
Sbjct: 247 MFDEMAR-EGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAM 305

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            +AG      A++ +M+ERG + N  T+ ALI GFC+    + A   + EM  + C+  P
Sbjct: 306 CRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEM--RECRIQP 363

Query: 329 --ISYNVILGGLCKDGK 343
             + YNV++ G CK G+
Sbjct: 364 SVVCYNVLINGYCKLGR 380



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 108/204 (52%), Gaps = 2/204 (0%)

Query: 140 LFQIMEKYVSPDACSYNILIHG-CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L  ++   V+P+  +YNIL+   C   +R E    V D+M      P +VT+ TL+   C
Sbjct: 142 LASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFC 201

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
               VD A +L   +MR   V+P    F +++ GLC  G +  A  + +EM R+ +  D 
Sbjct: 202 RAGEVDAAERLV-GVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDG 260

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y++L+S   KAG  +E  A+  EM ++G  P+ VT+ +LI   C+  + E A  ++ +
Sbjct: 261 VSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQ 320

Query: 319 MGDKGCKANPISYNVILGGLCKDG 342
           M ++G + N  ++  ++ G C++G
Sbjct: 321 MRERGLRMNEFTFTALIDGFCRNG 344



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 155/314 (49%), Gaps = 20/314 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ +  +I  + RA   +    ++ Q++ +  +   E  F  +I  + R   L+ AL  
Sbjct: 294 DVVTFTSLIHAMCRAGNLERAVALVGQMR-ERGLRMNEFTFTALIDGFCRNGFLDDALLA 352

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
             EM    +Q +V  +N L+N     G++D  +EL   ME K + PD  +Y+ ++ G   
Sbjct: 353 MKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCK 412

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
               + A+++  +M+K+ + P  +T+ +LI GLC E R+ +A +L E ++++  ++PD  
Sbjct: 413 IGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQL-GLQPDEF 471

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G C  G +  AL + +EM++  +  D   YS LI  L K+ R  E   +L ++
Sbjct: 472 TYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKL 531

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTIL----------------DEMGDKGCKANP 328
                 P+++ Y AL+   C+  +F++   +L                  M D+  K + 
Sbjct: 532 YYEDPVPDNIKYEALMH-CCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDG 590

Query: 329 ISYNVILGGLCKDG 342
             Y+V++ G C+ G
Sbjct: 591 SVYSVLIHGHCRGG 604



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 135/270 (50%), Gaps = 3/270 (1%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           + Y+ +++   +A    E   +  ++     +VP  + F ++I    RA  LERA+ +  
Sbjct: 261 VSYNTLVSGYCKAGCLHEALAVFAEMAQKG-VVPDVVTFTSLIHAMCRAGNLERAVALVG 319

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIHGCVVSR 166
           +M    ++M    F  L++     G LD  +  + ++ E  + P    YN+LI+G     
Sbjct: 320 QMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLG 379

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           R+++A ++  EM  + ++P +VT+ T++ G C     D A +L   +++   V PD   +
Sbjct: 380 RMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLK-KGVVPDAITY 438

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
           +SLI+GLC    L  A  + E+M++  ++ D   Y++LI    K G   +  ++  EM +
Sbjct: 439 SSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIK 498

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +G  P+ VTY+ LI G  K    + A  +L
Sbjct: 499 KGVLPDVVTYSVLIDGLSKSARTKEAQRLL 528



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 1/194 (0%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           +P   +YN ++   +    L  A ++   M++  + P + T+  L+  LC   + +EAL 
Sbjct: 117 APSLLAYNAVLLA-LSDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALG 175

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           +  D MR     P+   + +L+   C  GE+  A  +   M    +      ++++++ L
Sbjct: 176 VVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGL 235

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            KAGR  +   +  EM   G  P+ V+YN L+SG+CK      A  +  EM  KG   + 
Sbjct: 236 CKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDV 295

Query: 329 ISYNVILGGLCKDG 342
           +++  ++  +C+ G
Sbjct: 296 VTFTSLIHAMCRAG 309



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 143/329 (43%), Gaps = 51/329 (15%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +  R N   +  +I    R    D+    + +++ + RI P  + +  +I  Y +   ++
Sbjct: 324 RGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMR-ECRIQPSVVCYNVLINGYCKLGRMD 382

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILI 159
            A ++  EM +  ++  V  ++T+L+     G  D   EL  ++++K V PDA +Y+ LI
Sbjct: 383 EARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLI 442

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR---- 215
            G    RRL DA ++F++M++  LQP   T+ TLI G C E  V +AL L +++++    
Sbjct: 443 RGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVL 502

Query: 216 ----VYNVKPDG-----------------------------------------QVFASLI 230
                Y+V  DG                                         +   +L+
Sbjct: 503 PDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALL 562

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
           KG    G ++ A  V + M+    ++D  +YS LI    + G   +  +  K++   G  
Sbjct: 563 KGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFS 622

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEM 319
           PNS +  +L+ G  +E     A  ++ E+
Sbjct: 623 PNSTSTISLVRGLFEEGMTVEADNVIQEL 651



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 58/97 (59%), Gaps = 1/97 (1%)

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL-KEMKERGCKPNSVTYNALISGFCKE 306
            M+RD +  +   Y+ L+ AL   G++ E   ++  +M+  GC PN VTYN L++ FC+ 
Sbjct: 144 SMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRA 203

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + +AA  ++  M + G + + +++N ++ GLCK G+
Sbjct: 204 GEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGR 240


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 134/269 (49%), Gaps = 2/269 (0%)

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           D  + P    +  ++  Y R      A  + D+M    ++ TV  +NTLL      G  D
Sbjct: 395 DWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFD 454

Query: 136 RMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
              +++ +M K  V+PD   Y+ L+ G       E A  ++ +++ R    + +TF T+I
Sbjct: 455 DALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMI 514

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
            GLC   ++ EA ++  D M+     PDG  + +LI G C    +  A  VK  M R+ I
Sbjct: 515 SGLCKMGKMVEAEEIF-DKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPI 573

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
                +Y+SLIS LFK+ R  E   +L EM  RG  PN VTY ALI G+CKE   + AF+
Sbjct: 574 SPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFS 633

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
              EM + G  AN I  + ++ GL + G+
Sbjct: 634 SYFEMTENGLSANIIICSTMVSGLYRLGR 662



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 172/388 (44%), Gaps = 63/388 (16%)

Query: 9   ACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQ 68
           A L  L+ +P  +L  F+  +   N         FR N+  Y  ++  L R +M+DE + 
Sbjct: 73  AVLRNLRLNPTASLGFFQFVSKQQN---------FRPNVKSYCKLVHILSRGRMYDETRA 123

Query: 69  ILHQL------KHDTRIVPKEII------------FCNVIGFYGRARLLERALQMFDEMS 110
            L+QL      K    ++  E++            F  ++  Y    L + AL +FD M 
Sbjct: 124 YLNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMG 183

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----------------------- 147
                 +++  N+LLN  +  G+      ++Q M +                        
Sbjct: 184 KCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVD 243

Query: 148 -------------VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
                        V P+  +Y+ LI+G V    +E A  V   M ++ +   +VT+  LI
Sbjct: 244 EAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLI 303

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
            G C + ++DEA K+   +     + PD + +  LI G C  G++  A+ + +EM+R  +
Sbjct: 304 KGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGL 363

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           + +  I +SLI+   K G  +E   ++  M +   KP+S +YN L+ G+C+E     AF 
Sbjct: 364 KTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFN 423

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDG 342
           + D+M  +G +   ++YN +L GLC+ G
Sbjct: 424 LCDKMLQEGIEPTVLTYNTLLKGLCRVG 451



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 152/308 (49%), Gaps = 9/308 (2%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           E  P+ P   ++  Y+ +I+ L +++   E+  +L ++     + P  + +  +I  + +
Sbjct: 569 EREPISP---SIEMYNSLISGLFKSRRLVEVTDLLTEMGIRG-LTPNIVTYGALIDGWCK 624

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACS 154
             +L++A   + EM+   +   +   +T+++     G++D    L Q M  +   PD   
Sbjct: 625 EGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPD--- 681

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           +   +   +    ++      DE  K  L P  + +   I GLC   +VD+A +    ++
Sbjct: 682 HECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFS-ML 740

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
            +    PD   + +LI G  A G +  A  +++EM+R  +  +   Y++LI+ L K+   
Sbjct: 741 SLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENV 800

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +    +  ++ ++G  PN VTYN LI G+CK  + +AAF + D+M ++G   + ++Y+ +
Sbjct: 801 DRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSAL 860

Query: 335 LGGLCKDG 342
           + GLCK G
Sbjct: 861 INGLCKHG 868



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 136/264 (51%), Gaps = 3/264 (1%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           IVP   +   ++  + +   ++ A     +M +  V+  +  +++L+N  ++ G ++  K
Sbjct: 222 IVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAK 281

Query: 139 ELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYG 196
            + + M EK VS +  +Y +LI G     ++++A KV   M +   L P    +G LI G
Sbjct: 282 GVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDG 341

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
            C   ++D+A++L ++++R+  +K +  +  SLI G C  GE+  A GV   MV   ++ 
Sbjct: 342 YCRTGKIDDAVRLLDEMLRL-GLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKP 400

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           D+  Y++L+    + G  +E   +  +M + G +P  +TYN L+ G C+   F+ A  I 
Sbjct: 401 DSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIW 460

Query: 317 DEMGDKGCKANPISYNVILGGLCK 340
             M  +G   + + Y+ +L GL K
Sbjct: 461 HLMMKRGVAPDEVGYSTLLDGLFK 484



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 141/303 (46%), Gaps = 14/303 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            +L Y+ ++  L R   FD+  QI H L     + P E+ +  ++    +    E A  +
Sbjct: 436 TVLTYNTLLKGLCRVGAFDDALQIWH-LMMKRGVAPDEVGYSTLLDGLFKMENFEGASTL 494

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           + ++ +     +   FNT+++     GK+   +E+F  M+    SPD  +Y  LI G   
Sbjct: 495 WKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCK 554

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  +  A+KV   M +  + P++  + +LI GL    R+ E   L  + M +  + P+  
Sbjct: 555 ASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTE-MGIRGLTPNIV 613

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G C  G L  A     EM  + +  +  I S+++S L++ GR +E   ++++M
Sbjct: 614 TYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKM 673

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA----NPISYNVILGGLCK 340
            + G  P+          F K +   AA   + +  D+ CK     N I YN+ + GLCK
Sbjct: 674 VDHGFFPDH-------ECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCK 726

Query: 341 DGK 343
            GK
Sbjct: 727 TGK 729



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 101/201 (50%), Gaps = 2/201 (0%)

Query: 132 GKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           GK+D  +  F ++  K   PD  +Y  LIHG   +  +++A+++ DEM++R L P +VT+
Sbjct: 728 GKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTY 787

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
             LI GLC    VD A +L   + +   + P+   + +LI G C +G +  A  +K++M+
Sbjct: 788 NALINGLCKSENVDRAQRLFHKLHQ-KGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMI 846

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
            + I      YS+LI+ L K G       +L +M + G     + Y  L+ G+ +  + +
Sbjct: 847 EEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQ 906

Query: 311 AAFTILDEMGDKGCKANPISY 331
               + D M  +      IS+
Sbjct: 907 KIHKLYDMMHIRCLSTTAISH 927



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 118/248 (47%), Gaps = 39/248 (15%)

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKYVS--PDACSYNILIHGCVVSR-RLEDAWK----- 173
           N  LNP  + G        FQ + K  +  P+  SY  L+H  ++SR R+ D  +     
Sbjct: 77  NLRLNPTASLG-------FFQFVSKQQNFRPNVKSYCKLVH--ILSRGRMYDETRAYLNQ 127

Query: 174 -------------VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                        ++DE+V    +     F   ++ + L++ V++ L  K  +    N+ 
Sbjct: 128 LVDLCKFKDRGNVIWDELVGVYRE---FAFSPTVFDMILKVYVEKGLT-KNALYVFDNMG 183

Query: 221 PDGQVFA-----SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
             G++ +     SL+  L   GE   A  V ++M+R  I  D  + S +++A  K G+ +
Sbjct: 184 KCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVD 243

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E    +K+M+  G +PN VTY++LI+G+    D EAA  +L  M +KG   N ++Y +++
Sbjct: 244 EAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLI 303

Query: 336 GGLCKDGK 343
            G CK  K
Sbjct: 304 KGYCKQCK 311



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 73/145 (50%), Gaps = 2/145 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ +I  L +++  D  Q++ H+L H   + P  + +  +I  Y +   ++ A ++
Sbjct: 783 NIVTYNALINGLCKSENVDRAQRLFHKL-HQKGLFPNVVTYNTLIDGYCKIGNMDAAFKL 841

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVV 164
            D+M    +  +V  ++ L+N     G ++R MK L Q+++  V      Y  L+ G + 
Sbjct: 842 KDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIR 901

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVT 189
           S  ++   K++D M  R L  T ++
Sbjct: 902 SGEMQKIHKLYDMMHIRCLSTTAIS 926


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 144/270 (53%), Gaps = 8/270 (2%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  I +  +I    +    + A ++F EM +  V   V  + +L++     GK    K L
Sbjct: 481 PNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYL 540

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++  V PD  ++++LI       ++ +A ++ + M++R   P  VT+ TL+ GLC+
Sbjct: 541 FNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCM 600

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM--- 256
             R+ EA +L    M+     PD   + +L+KGLC  G +  AL + ++M+ D  +    
Sbjct: 601 NDRISEATQLFMK-MQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTN 659

Query: 257 ---DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
              D   YS +I  L K GR++E   + KEMK  G  PN ++Y +LI GFC+    E A 
Sbjct: 660 FKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAK 719

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + +EM D+G + N ++Y+V++ G CK+G+
Sbjct: 720 HLFNEMVDQGVQLNAVTYSVMIHGFCKEGQ 749



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 161/327 (49%), Gaps = 27/327 (8%)

Query: 7   RLACLPRL------------QKDPKLALQLFKN--PNPNPNDTEAHPLKPFRYNLLHYDL 52
           +L C+P +              + K+AL+L KN   + +P      P      N + Y +
Sbjct: 435 KLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKP------NAISYSI 488

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           II  L +    DE +++  ++K    ++P  I + ++I  + R+   + A  +F+EM   
Sbjct: 489 IIDGLCKCGREDEARELFKEMKA-LGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDI 547

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDA 171
            VQ  V  F+ L++     GK+    EL ++M ++   P+  +Y  L+ G  ++ R+ +A
Sbjct: 548 GVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEA 607

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR-----VYNVKPDGQVF 226
            ++F +M K    P +VT+GTL+ GLC    +  AL+L + ++        N KPD   +
Sbjct: 608 TQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISY 667

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
           + +I GLC  G    A  + +EM    +  +   Y+SLI    ++G+  +   +  EM +
Sbjct: 668 SIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVD 727

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAF 313
           +G + N+VTY+ +I GFCKE   + A 
Sbjct: 728 QGVQLNAVTYSVMIHGFCKEGQIDKAL 754



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 170/387 (43%), Gaps = 54/387 (13%)

Query: 7   RLACLPRLQKDPKLALQLFKNPNPNP---------NDTEAHPLKPFRYNLLHYDLIITKL 57
           +L C P       L   L +  N N          NDT  + +K  +  L+ Y +II  L
Sbjct: 254 KLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIK-CKPTLISYSIIIDGL 312

Query: 58  GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT 117
            + +  DE +++  ++K    I+P  I +  +I  +  +   E+A  +F+EM    +Q  
Sbjct: 313 CKDRREDEARELFKEMKAQG-IMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPD 371

Query: 118 VKFFNTLLNPKLTCGKLDRMKELFQI-MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFD 176
           V   + L++     GK+    +L ++ +++   PD  +   L+ G  +  R+  A ++F 
Sbjct: 372 VTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFL 431

Query: 177 EMVKRRLQPTLVTFGTLIYGLC--------LEL--------------------------- 201
           +M K    P +VT  TL+ GLC        LEL                           
Sbjct: 432 KMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIID 491

Query: 202 ------RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
                 R DEA +L ++ M+   V PD   + SLI G C  G+   A  +  EMV   ++
Sbjct: 492 GLCKCGREDEARELFKE-MKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQ 550

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   +S LI  L K G+  E   +L+ M +RGC PN+VTY  L+ G C  +    A  +
Sbjct: 551 PDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQL 610

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
             +M   GC  + ++Y  ++ GLC+ G
Sbjct: 611 FMKMQKLGCLPDVVTYGTLMKGLCQTG 637



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 43/351 (12%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           NDT  + +K  +  L+ Y +II  L + +  DE +++  ++K    ++P  I + ++I  
Sbjct: 108 NDTSQYGIK-CKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQG-MMPDVISYTSLIHG 165

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPD 151
           + R+   E+A  +F+EM    ++  V   + L++     GK+    EL ++M ++    D
Sbjct: 166 FCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILD 225

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +Y+ LI G  +  R+ +A ++F  M K   +P  + +GTL+ GLC    ++ AL+L +
Sbjct: 226 IVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQ 285

Query: 212 DI----------------------------------------MRVYNVKPDGQVFASLIK 231
           ++                                        M+   + PD   + +LI 
Sbjct: 286 EMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIH 345

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           G C  G+   A  +  EM+   I+ D    S LI  L K G+  E   +L+ + +RGC P
Sbjct: 346 GFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIP 405

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + VT   L+ G C +     A  +  +M   GC  N ++   ++ GLC+ G
Sbjct: 406 DVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSG 456



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 117/204 (57%), Gaps = 11/204 (5%)

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + PD  +  +LI       ++ +A ++ + MV+R     +VT+ TLI GLC++ R+ EA 
Sbjct: 6   IQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEAT 65

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI------- 260
           +L    M+    +PD   + +L+KGLC  G++++AL + +EM+ D  +   GI       
Sbjct: 66  QLFMS-MKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQY--GIKCKPTLV 122

Query: 261 -YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YS +I  L K  R++E   + KEMK +G  P+ ++Y +LI GFC+   +E A  + +EM
Sbjct: 123 SYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEM 182

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
            D G +++  + ++++  LCK+GK
Sbjct: 183 LDVGIRSDVTTSSMLIDILCKEGK 206



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 125/258 (48%), Gaps = 9/258 (3%)

Query: 92  FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSP 150
           F    +++E A ++ + M      + +  ++TL+       ++    +LF  M+K    P
Sbjct: 20  FCKEGKVIE-ANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRP 78

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ------PTLVTFGTLIYGLCLELRVD 204
           DA +Y  L+ G   + ++  A  +  EM+    Q      PTLV++  +I GLC + R D
Sbjct: 79  DAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRRED 138

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           EA +L ++ M+   + PD   + SLI G C  G+   A  +  EM+   I  D    S L
Sbjct: 139 EARELFKE-MKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSML 197

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           I  L K G+  E   +L+ M +RGC  + VTY+ LI G C +     A  +   M   GC
Sbjct: 198 IDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGC 257

Query: 325 KANPISYNVILGGLCKDG 342
           + + I+Y  ++ GLC+ G
Sbjct: 258 RPDAIAYGTLMKGLCQTG 275



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 125/256 (48%), Gaps = 14/256 (5%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-------PD 151
           +  A Q+F  M     +     + TL+      GK++    L Q M    S       P 
Sbjct: 61  ISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPT 120

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             SY+I+I G    RR ++A ++F EM  + + P ++++ +LI+G C   + ++A  L  
Sbjct: 121 LVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFN 180

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           +++ V  ++ D    + LI  LC  G++  A  + E M++    +D   YS+LI  L   
Sbjct: 181 EMLDV-GIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMK 239

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM-GDKG-----CK 325
            R +E   +   M++ GC+P+++ Y  L+ G C+  +   A  +  EM  D G     CK
Sbjct: 240 HRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCK 299

Query: 326 ANPISYNVILGGLCKD 341
              ISY++I+ GLCKD
Sbjct: 300 PTLISYSIIIDGLCKD 315



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 47/95 (49%)

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M+   I+ D      LI    K G+  E   +L+ M +RGC  + VTY+ LI G C +  
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              A  +   M   GC+ + I+Y  ++ GLC+ GK
Sbjct: 61  ISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGK 95


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 149/295 (50%), Gaps = 4/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ II+ L +A   +E    L +++    + P  + F   I  Y +   +  A + FDEM
Sbjct: 223 YNAIISCLSKAGKMEEASTYLLEIQ-GRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEM 281

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
               +      +  L+N     G L     +F+ +    V PD  + +  IHG + + R+
Sbjct: 282 LDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRV 341

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           ++A KVF E+ ++ L P + T+ +LI G C +  V++A +L  D M +  + P+  ++ +
Sbjct: 342 QEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFEL-HDEMCLKGIAPNIFIYNA 400

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ GLC  G++  A  + + M    +E D+  YS++I    K+    E  ++  EM  +G
Sbjct: 401 LVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKG 460

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +P+S  YNAL+ G CKE D E A  +  EM  KG  A  +S+N ++ G CK  K
Sbjct: 461 VQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCK 514



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 150/331 (45%), Gaps = 38/331 (11%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           + Y  +I  L   K      ++L ++   + + P  +++  +I  Y     +E A ++ D
Sbjct: 151 VSYGAMINGLCHCKDLSLANKLLEKMTF-SGLKPNVVVYSTLIMGYASEGRIEEARRLLD 209

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNILIHGCVVSR 166
            MS   V   +  +N +++     GK++     L +I  + + PDA ++   I G   + 
Sbjct: 210 GMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTG 269

Query: 167 RLEDAWKVFDEMVKRRLQPT-----------------------------------LVTFG 191
           ++ +A K FDEM+   L P                                    + T  
Sbjct: 270 KMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCS 329

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
             I+GL    RV EALK+  + ++   + PD   ++SLI G C  GE+  A  + +EM  
Sbjct: 330 AFIHGLLKNGRVQEALKVFSE-LKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCL 388

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
             I  +  IY++L+  L K+G       +   M E+G +P+SVTY+ +I G+CK E+   
Sbjct: 389 KGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAE 448

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           AF++  EM  KG + +   YN ++ G CK+G
Sbjct: 449 AFSLFHEMPSKGVQPHSFVYNALVHGCCKEG 479



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 163/339 (48%), Gaps = 33/339 (9%)

Query: 21  ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
           AL +F++ +      +      F + LL       K GR +   E  ++  +LK +  +V
Sbjct: 309 ALSIFRHLHALGVLPDVQTCSAFIHGLL-------KNGRVQ---EALKVFSELK-EKGLV 357

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    + ++I  + +   +E+A ++ DEM    +   +  +N L++     G + R ++L
Sbjct: 358 PDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKL 417

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F  M EK + PD+ +Y+ +I G   S  + +A+ +F EM  + +QP    +  L++G C 
Sbjct: 418 FDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCK 477

Query: 200 ELRVDEALKL-KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
           E  +++A+ L +E + + +        F +LI G C   ++  A  + +EM+  +I  D 
Sbjct: 478 EGDMEKAMNLFREMLQKGFATTLS---FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDH 534

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKER-----------------GCKPNSVTYNALIS 301
             Y+++I    KAG+  E   + KEM+ER                 G KP+ VTY  +I 
Sbjct: 535 VTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIY 594

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             CKE++   AF + DE+  KG       +++++  LCK
Sbjct: 595 AHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCK 633



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 146/298 (48%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y +I   L RAK  +E +    +++  T + P       +I  + R   ++  L++
Sbjct: 9   NTYTYTIITAGLCRAKRMNEAKLTFEEMQK-TGLKPDYNACSALIDGFMREGDIDEVLRI 67

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            D M S  + + +  +N L++     GK+++  E+ + M      P++ ++ +LI G   
Sbjct: 68  KDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCR 127

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +  A ++ DEM KR L P+ V++G +I GLC    +  A KL E  M    +KP+  
Sbjct: 128 EHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEK-MTFSGLKPNVV 186

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           V+++LI G  + G +  A  + + M    +  D   Y+++IS L KAG+  E    L E+
Sbjct: 187 VYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEI 246

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + RG KP++VT+ A I G+ K      A    DEM D G   N   Y V++ G  K G
Sbjct: 247 QGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAG 304



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 125/266 (46%), Gaps = 2/266 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           +VP    +  +     RA+ +  A   F+EM    ++      + L++  +  G +D + 
Sbjct: 6   LVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVL 65

Query: 139 ELFQIMEKYVSP-DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            +  +M     P +  +YN+LIHG     ++E A ++   M+    +P   TF  LI G 
Sbjct: 66  RIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGY 125

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C E  +  AL+L ++ M   N+ P    + ++I GLC   +LSLA  + E+M    ++ +
Sbjct: 126 CREHNMGRALELLDE-MEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPN 184

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
             +YS+LI      GR  E   +L  M   G  P+   YNA+IS   K    E A T L 
Sbjct: 185 VVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLL 244

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
           E+  +G K + +++   + G  K GK
Sbjct: 245 EIQGRGLKPDAVTFGAFILGYSKTGK 270



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 87/162 (53%), Gaps = 1/162 (0%)

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M ++ L P   T+  +  GLC   R++EA KL  + M+   +KPD    ++LI G    G
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEA-KLTFEEMQKTGLKPDYNACSALIDGFMREG 59

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           ++   L +K+ MV   I ++   Y+ LI  L K G+  +   ILK M   GCKPNS T+ 
Sbjct: 60  DIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFC 119

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
            LI G+C+E +   A  +LDEM  +    + +SY  ++ GLC
Sbjct: 120 LLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLC 161



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 100/199 (50%), Gaps = 1/199 (0%)

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
           EK + P+  +Y I+  G   ++R+ +A   F+EM K  L+P       LI G   E  +D
Sbjct: 3   EKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDID 62

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           E L++K D+M    +  +   +  LI GLC  G++  A  + + M+    + ++  +  L
Sbjct: 63  EVLRIK-DVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLL 121

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           I    +         +L EM++R   P++V+Y A+I+G C  +D   A  +L++M   G 
Sbjct: 122 IEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGL 181

Query: 325 KANPISYNVILGGLCKDGK 343
           K N + Y+ ++ G   +G+
Sbjct: 182 KPNVVVYSTLIMGYASEGR 200



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 127/287 (44%), Gaps = 31/287 (10%)

Query: 40  LKPFRYNLLHYDLIITKLGRA-------KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           LK    N+  Y+ ++  L ++       K+FD M +          + P  + +  +I  
Sbjct: 388 LKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPE--------KGLEPDSVTYSTMIDG 439

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDA 152
           Y ++  +  A  +F EM S  VQ     +N L++     G +++   LF+ M +      
Sbjct: 440 YCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATT 499

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA-LKLKE 211
            S+N LI G   S ++++A ++F EM+ +++ P  VT+ T+I   C   +++EA L  KE
Sbjct: 500 LSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKE 559

Query: 212 ---------------DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
                          + M    VKPD   +  +I   C    L  A  +++E+V   +  
Sbjct: 560 MQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLT 619

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
              I+  LI+AL K     E   +L EM E G KP+    + L+  F
Sbjct: 620 KGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSF 666



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 141/302 (46%), Gaps = 21/302 (6%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           +  P K    + + Y  +I    +++   E   + H++     + P   ++  ++    +
Sbjct: 419 DGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP-SKGVQPHSFVYNALVHGCCK 477

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACS 154
              +E+A+ +F EM       T+ F NTL++      K+    +LFQ ++ K + PD  +
Sbjct: 478 EGDMEKAMNLFREMLQKGFATTLSF-NTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVT 536

Query: 155 YNILIHGCVVSRRLEDA-----------------WKVFDEMVKRRLQPTLVTFGTLIYGL 197
           Y  +I     + ++E+A                 + +F++MV + ++P  VT+G +IY  
Sbjct: 537 YTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAH 596

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C E  + EA KL+++++    +   G +   LI  LC   +L+ A  + +EM    ++  
Sbjct: 597 CKEDNLVEAFKLRDEVVG-KGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPS 655

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
               S+L+ +  +AG+ +E   + + +K  G  P++ T   L++G   + D E A  ++ 
Sbjct: 656 LAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIK 715

Query: 318 EM 319
           ++
Sbjct: 716 QL 717


>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
          Length = 733

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 164/333 (49%), Gaps = 15/333 (4%)

Query: 13  RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ 72
           +LQ D ++AL+ F   +             +R++ + Y  ++  L + K+    +++L +
Sbjct: 109 QLQTDERVALRFFYWADRQWR---------YRHDPIVYYAMLEILSKTKLCQGAKRVL-R 158

Query: 73  LKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132
           L    RI  +   F  V+  Y RA  L  A++    M    ++  +   NT ++  +   
Sbjct: 159 LMAKRRIERRPEAFGYVMVSYSRAGKLRNAMRXLTMMQKAGIEPDLSICNTAIHVLVMGN 218

Query: 133 KLD---RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
           +LD   R  E  QI+E  + P+  +YN LI G     RLEDA ++  EM  +   P  ++
Sbjct: 219 RLDKAVRFLERMQIVE--IXPNVITYNCLIKGYCDLHRLEDAXELIAEMPFKGCSPDKIS 276

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           + T++  LC E R+ E   L E +++  N+ PD   + + +  L   G    AL    E 
Sbjct: 277 YYTVMGFLCKEKRIKELRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREA 336

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
              +  +D   YS+++ +  + GR ++   I+ EM  +GC P+ VTY ++I+G C+E   
Sbjct: 337 EERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKV 396

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + A  +L +M   GCK N +SY  +L GLCK+G
Sbjct: 397 DQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNG 429



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 142/307 (46%), Gaps = 13/307 (4%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + FR + + Y  I+    R    D+ ++I++++      +P  + + +VI    + R ++
Sbjct: 339 RRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEM-FSKGCIPDVVTYTSVINGLCQERKVD 397

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILI 159
           +A +M  +M     +     +  LLN     G     +E+  + E+ +  P+A +Y++L+
Sbjct: 398 QAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVLM 457

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR---V 216
           HG     +  +A  +  EM+K+   PT V    LI  LC E +VDEA +  E  +     
Sbjct: 458 HGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCA 517

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
            NV      F ++I G C   +L  AL + ++M       D   Y+++I AL K GR  E
Sbjct: 518 VNVVN----FTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEE 573

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM-GDKGCKANPISYNVIL 335
              +  +M   G  P  VTY  +I  +C+    E    +L++M   + C+    +YN ++
Sbjct: 574 ATKLAMKMLRVGWIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRT---AYNQVI 630

Query: 336 GGLCKDG 342
             LC  G
Sbjct: 631 EKLCSFG 637



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 146/309 (47%), Gaps = 8/309 (2%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           P K    + + Y  ++  L + K   E++ ++ ++  D+ ++P ++ +   +    +   
Sbjct: 266 PFKGCSPDKISYYTVMGFLCKEKRIKELRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGH 325

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
            + AL+   E      ++    ++ +++     G++D+ KE+  ++  K   PD  +Y  
Sbjct: 326 GDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTS 385

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL---ELRVDEALKLKEDIM 214
           +I+G    R+++ A K+  +M K   +P  V++  L+ GLC     L   E + + E+  
Sbjct: 386 VINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEXW 445

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
            +    P+   ++ L+ G    G+ S A  +  EM++          + LI +L +  + 
Sbjct: 446 WI----PNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKV 501

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +E    +++    GC  N V +  +I GFC+++D EAA ++LD+M       + ++Y  I
Sbjct: 502 DEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTI 561

Query: 335 LGGLCKDGK 343
           +  L K G+
Sbjct: 562 IDALGKKGR 570



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 139/301 (46%), Gaps = 16/301 (5%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           +H  ++  +L +A  F E  QI+        I P  I +  +I  Y     LE A ++  
Sbjct: 211 IHVLVMGNRLDKAVRFLERMQIVE-------IXPNVITYNCLIKGYCDLHRLEDAXELIA 263

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-----PDACSYNILIHGC 162
           EM           + T++     C K  R+KEL  +MEK +      PD  +YN  +H  
Sbjct: 264 EMPFKGCSPDKISYYTVMG--FLC-KEKRIKELRLLMEKMLKDSNLLPDQVTYNTFVHML 320

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
                 ++A +   E  +RR +   V +  +++  C E R+D+A ++  ++     + PD
Sbjct: 321 SKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCI-PD 379

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + S+I GLC   ++  A  +  +M +   + +   Y++L++ L K G   E   ++ 
Sbjct: 380 VVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMN 439

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             +E    PN++TY+ L+ GF +E     A  ++ EM  KG    P+  N+++  LC++ 
Sbjct: 440 MSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEE 499

Query: 343 K 343
           K
Sbjct: 500 K 500



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 6/145 (4%)

Query: 131 CGKLDRMKELFQIMEKYVS---PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
           C K D    L  + + Y+S   PD  +Y  +I       R+E+A K+  +M++    PT 
Sbjct: 531 CQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGWIPTP 590

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           VT+ T+I+  C   RV++ LKL E ++     +     +  +I+ LC+ G L  A  +  
Sbjct: 591 VTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRT---AYNQVIEKLCSFGNLEQAYKLLG 647

Query: 248 EMVRDKIEMDAGIYSSLISALFKAG 272
           +++R   ++DA     LI +    G
Sbjct: 648 KVLRTASKIDANTCHMLIESYLSKG 672


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 149/297 (50%), Gaps = 2/297 (0%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +N    + ++  L +A+   +  QI              I +  +IG + +A  +ERA Q
Sbjct: 67  HNNFTCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQ 126

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           +  EM        V   ++++      G L R  + F+      +PD+  +NIL+HG   
Sbjct: 127 LLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFR-ESVECAPDSVLFNILVHGLCK 185

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + +L +A ++ +EM +R + P +VT+ +LI GLC   R++EA +L E +++   V+P+  
Sbjct: 186 ANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVK-RKVRPNLV 244

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G C  G   LA  + E M++     D   ++SLIS   +  + ++   +L  M
Sbjct: 245 TYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLM 304

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           K+  C PN VTYN LISG C       A  +L EM  +G   + I+YN ++G  C++
Sbjct: 305 KKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRN 361



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 145/297 (48%), Gaps = 5/297 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y+ +I    +A   +   Q+L ++K      P  +   +++        L RA+Q 
Sbjct: 104 NHITYNTLIGGFCKAGDMERAFQLLAEMKERGH-SPDVVTHSSIVQALCNTGNLSRAMQY 162

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F E  S         FN L++      +L   +++ + M E+ + PD  +YN LI G   
Sbjct: 163 FRE--SVECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCK 220

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S R+E+A ++ + MVKR+++P LVT+ TLIYG C       A +L E +++     PD  
Sbjct: 221 SYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQ-SGTHPDVV 279

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F SLI G C   ++  A  V   M +     +   Y+ LIS L  AGR NE   +L EM
Sbjct: 280 TFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEM 339

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             RG  P+ +TYN+LI  FC+    E AF I + M ++G   + ISY  +   L K 
Sbjct: 340 DGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKS 396



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 127/251 (50%), Gaps = 5/251 (1%)

Query: 95  RARLLERALQMF-DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDA 152
           +AR   +A Q+F DE+   +       +NTL+      G ++R  +L   M E+  SPD 
Sbjct: 81  KARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDV 140

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +++ ++     +  L  A + F E V+    P  V F  L++GLC   ++ EA ++ E+
Sbjct: 141 VTHSSIVQALCNTGNLSRAMQYFRESVE--CAPDSVLFNILVHGLCKANQLSEARQMIEE 198

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M    + PD   + SLI GLC    +  A  + E MV+ K+  +   Y++LI    K G
Sbjct: 199 -MSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTG 257

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
                  +++ M + G  P+ VT+N+LISGFC++   + A  +L  M    C  N ++YN
Sbjct: 258 CTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYN 317

Query: 333 VILGGLCKDGK 343
           V++ GLC  G+
Sbjct: 318 VLISGLCDAGR 328



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 144/299 (48%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I  L ++   +E +Q+L  +    ++ P  + +  +I  Y +      A Q+
Sbjct: 207 DVVTYNSLIDGLCKSYRMEEARQLLETMV-KRKVRPNLVTYNTLIYGYCKTGCTGLAHQL 265

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV-SPDACSYNILIHGCVV 164
            + M        V  FN+L++      K+D+  E+  +M+K + +P+  +YN+LI G   
Sbjct: 266 IERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCD 325

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R  +A ++  EM  R + P ++T+ +LI   C   ++++A ++ +++M    V PDG 
Sbjct: 326 AGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQI-QNLMVERGVIPDGI 384

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +L   L        A  + + M       +   ++SL+  L  + R +E   +L  M
Sbjct: 385 SYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVM 444

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  GC P + TY  L++G CK    + A  +L  M  +G +    S   I+  L ++GK
Sbjct: 445 RRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGK 503


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 149/299 (49%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  II  L +        Q+L +++ +    P  + +  +I    + RL+  A+  
Sbjct: 44  DVITYSTIINGLCKMGNTTMALQLLKKME-EKGCKPNVVAYNTIIDSLCKDRLVTEAMDF 102

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           F EM    +   V  ++++L+     G+++    LF Q++E+ V P+  ++ ILI G   
Sbjct: 103 FSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCK 162

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            R + +AW VF+ M ++ L+P + T+  L+ G C   ++DEA KL  +IM      P+ +
Sbjct: 163 KRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLF-NIMDRKGCAPNVR 221

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LI G C  G +  A G+  EM    +  D   YS+L+    + GR  E   +LKEM
Sbjct: 222 SYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEM 281

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  PN +TY+ ++ G CK    + AF +L  M +   + N   Y +++ G+C  GK
Sbjct: 282 CSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGK 340



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 154/309 (49%), Gaps = 10/309 (3%)

Query: 36  EAHPLKPFRYN-LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYG 94
           E  P   F Y+ +LH       LGR    +E   +  Q+  +  ++P ++ F  +I    
Sbjct: 109 EGIPPDVFTYSSILHG---FCNLGRV---NEATSLFKQMV-ERNVIPNKVTFTILIDGLC 161

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDAC 153
           + R++  A  +F+ M+   ++  V  +N L++   +  ++D  ++LF IM+ K  +P+  
Sbjct: 162 KKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVR 221

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           SYNILI+G   S R+++A  +  EM  + L P + T+ TL+ G C   R  EA +L ++ 
Sbjct: 222 SYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKE- 280

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M  Y + P+   ++ ++ GLC  G L  A  + + M   KIE +  IY+ LI  +   G+
Sbjct: 281 MCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGK 340

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
                 +   +  +G +P  VTY  +ISG  K      A  +  EM   GC  N  +YNV
Sbjct: 341 LEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNV 400

Query: 334 ILGGLCKDG 342
           I+ G  ++G
Sbjct: 401 IIQGFLRNG 409



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 132/265 (49%), Gaps = 4/265 (1%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F  ++ G   +A++++ A+++FDEM     +  V  ++T++N     G      +
Sbjct: 8   PTLVTFNTLLSGLCSKAKIMD-AVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQ 66

Query: 140 LFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L + M EK   P+  +YN +I      R + +A   F EMVK  + P + T+ ++++G C
Sbjct: 67  LLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFC 126

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              RV+EA  L + ++   NV P+   F  LI GLC    +S A  V E M    +E D 
Sbjct: 127 NLGRVNEATSLFKQMVE-RNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDV 185

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y++L+       + +E   +   M  +GC PN  +YN LI+G CK    + A  +L E
Sbjct: 186 YTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAE 245

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M  K    +  +Y+ ++ G C+ G+
Sbjct: 246 MSHKSLTPDIFTYSTLMRGFCQVGR 270



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 122/236 (51%), Gaps = 2/236 (0%)

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV-SPDACSYNILIHGCVVSRR 167
           M    +Q T+  FNTLL+   +  K+    +LF  M K    PD  +Y+ +I+G      
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
              A ++  +M ++  +P +V + T+I  LC +  V EA+    ++++   + PD   ++
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVK-EGIPPDVFTYS 119

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           S++ G C +G ++ A  + ++MV   +  +   ++ LI  L K    +E   + + M E+
Sbjct: 120 SILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEK 179

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G +P+  TYNAL+ G+C     + A  + + M  KGC  N  SYN+++ G CK G+
Sbjct: 180 GLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGR 235


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 153/300 (51%), Gaps = 6/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            ++ Y+ IIT   RA+  DE    + Q+  +    P  I +  +IG + ++R + R L++
Sbjct: 143 TVVTYNSIITGFCRARRVDEAHGFMEQMVAEG-CHPDIITYTALIGGFCKSRDVGRGLEL 201

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
             E++       +  ++T+++     G+L    ++F+ M    +P A +YN LI G   +
Sbjct: 202 LGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS--CAPTAITYNSLIGGYCRA 259

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             +++A ++  +MV  +  P +VT+ TL+   C   R+D+A +L +  M    + PD   
Sbjct: 260 GDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQ-MVANKLSPDVVT 318

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F SL+ GLC  G +  AL + EE+ R         Y+ ++    KA +  +   ++ + +
Sbjct: 319 FTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFR 378

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG--CKANPISYNVILGGLCKDGK 343
            RG  PN+VTYN L++G C+    + A   LD++  +G  C  +   Y +IL  LC+DG+
Sbjct: 379 SRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGR 438



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 146/299 (48%), Gaps = 6/299 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y  ++  L + +  DE   ++  +  +    P  + + ++I  + RAR ++ A   
Sbjct: 108 NAITYSALVDGLCKCERLDEAVALVETMA-ERGCAPTVVTYNSIITGFCRARRVDEAHGF 166

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            ++M +      +  +  L+        + R  EL  ++  +  +PD  +Y+ +I G   
Sbjct: 167 MEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCK 226

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + RL DA  +F+EM      PT +T+ +LI G C    +DEA++L   ++      PD  
Sbjct: 227 AGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVD-DKCAPDVV 282

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +L+   C +G L  A  + ++MV +K+  D   ++SL+  L   GR  +   +L+E+
Sbjct: 283 TYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEI 342

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             RGC P   TYN ++ G+CK      A  ++ +   +G   N ++YN+++ G C+ G+
Sbjct: 343 TRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGR 401



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 1/224 (0%)

Query: 120 FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
             N ++      G+L     +++ M     PD  +Y  L+HG   +RRL DA +V  EMV
Sbjct: 7   LHNVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMV 66

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
             R  P   T   ++  LCL  RVD+A +L E+++    +  +   +++L+ GLC    L
Sbjct: 67  SARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLH-RGMAANAITYSALVDGLCKCERL 125

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A+ + E M           Y+S+I+   +A R +E    +++M   GC P+ +TY AL
Sbjct: 126 DEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTAL 185

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I GFCK  D      +L E+  +G   + ++Y+ ++ GLCK G+
Sbjct: 186 IGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGR 229



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 142/305 (46%), Gaps = 8/305 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + F  +++ Y  +I  L +A    +   I  ++       P  I + ++IG Y RA  ++
Sbjct: 208 RGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS----CAPTAITYNSLIGGYCRAGDMD 263

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            A+++  +M        V  + TL++     G+LD   ELFQ M    +SPD  ++  L+
Sbjct: 264 EAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLV 323

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G     R+EDA ++ +E+ +R   PT+ T+  ++ G C   +V +A +L  D  R    
Sbjct: 324 DGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADF-RSRGF 382

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK--IEMDAGIYSSLISALFKAGRKNEF 277
            P+   +  L+ G C  G    AL   +++  +         +Y+ ++ AL + GR ++ 
Sbjct: 383 VPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDA 442

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
               +EM +RG  P + T+  ++   CK    + A  +L+EM   G    P + + ++  
Sbjct: 443 VQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSA 502

Query: 338 LCKDG 342
            C+ G
Sbjct: 503 YCRAG 507



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 107/193 (55%), Gaps = 2/193 (1%)

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           ++P    +N++I G   + RL  A  V+ +M      P  +T+  L++GL    R+ +A+
Sbjct: 1   MNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAH-PPDFLTYTKLVHGLSKARRLRDAV 59

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           ++ ++++   +V PD      +++ LC    +  A  + EEM+   +  +A  YS+L+  
Sbjct: 60  QVLQEMVSARHV-PDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDG 118

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L K  R +E  A+++ M ERGC P  VTYN++I+GFC+    + A   +++M  +GC  +
Sbjct: 119 LCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPD 178

Query: 328 PISYNVILGGLCK 340
            I+Y  ++GG CK
Sbjct: 179 IITYTALIGGFCK 191



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 119/244 (48%), Gaps = 7/244 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           +++ Y  +++   +    D+  ++  Q+  + ++ P  + F +++ G  G  R+ E AL+
Sbjct: 280 DVVTYTTLMSAFCKMGRLDDAYELFQQMVAN-KLSPDVVTFTSLVDGLCGEGRM-EDALE 337

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCV 163
           + +E++      T+  +N +++      ++ + +EL      +   P+  +YNIL+ GC 
Sbjct: 338 LLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCC 397

Query: 164 VSRRLEDAWKVFDEMVKRRLQ-PTLVT-FGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
            + R + A +  D++       PT V  +  ++  LC + R D+A++  E++++   V P
Sbjct: 398 RAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYV-P 456

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
               FA+++  LC   +   A  + EEM++       G   +++SA  +AG   +   + 
Sbjct: 457 AAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELA 516

Query: 282 KEMK 285
            E++
Sbjct: 517 SELR 520


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 144/270 (53%), Gaps = 8/270 (2%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  I +  +I    +    + A ++F EM +  V   V  + +L++     GK    K L
Sbjct: 637 PNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYL 696

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++  V PD  ++++LI       ++ +A ++ + M++R   P  VT+ TL+ GLC+
Sbjct: 697 FNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCM 756

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM--- 256
             R+ EA +L    M+     PD   + +L+KGLC  G +  AL + ++M+ D  +    
Sbjct: 757 NDRISEATQLFMK-MQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTN 815

Query: 257 ---DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
              D   YS +I  L K GR++E   + KEMK  G  PN ++Y +LI GFC+    E A 
Sbjct: 816 FKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAK 875

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + +EM D+G + N ++Y+V++ G CK+G+
Sbjct: 876 HLFNEMVDQGVQLNAVTYSVMIHGFCKEGQ 905



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 170/335 (50%), Gaps = 18/335 (5%)

Query: 20  LALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRI 79
           +ALQL +      NDT  + +K  +  L+ Y +II  L + +  DE +++  ++K    +
Sbjct: 142 IALQLHQEM---LNDTGRYGIK-CKPTLISYSIIIDGLCKDRREDEARELFKEMKAQG-M 196

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           +P  I + ++I  +  +   E+A  +F+EM    +Q  V     L++     GK+    E
Sbjct: 197 MPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANE 256

Query: 140 LFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L ++M  +    D  +Y+ LI G  +  R+ +A ++F  M K   +P  + +GTL+ GLC
Sbjct: 257 LLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLC 316

Query: 199 LELRVDEALKLKEDIMR------VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
              +++ AL L ++++       +  ++PD    + LI  LC  G++  A  + E M++ 
Sbjct: 317 QTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQR 376

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
              +D   YS+LI  L    R +E   +   M++ GC+P+++TY  L+ G C+  +   A
Sbjct: 377 GCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIA 436

Query: 313 FTILDEM-GDKG-----CKANPISYNVILGGLCKD 341
             +  EM  D G     CK   ISY++I+ GLCKD
Sbjct: 437 LQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKD 471



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 156/312 (50%), Gaps = 14/312 (4%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT-----RIVPKEIIFCNVIGFYGRARL 98
           R + + Y  ++  L +    +   Q+  ++ +DT     +  P  I +  +I    + R 
Sbjct: 121 RPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRR 180

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
            + A ++F EM +  +   V  + +L++     GK ++ K LF ++++  + PD  +  +
Sbjct: 181 EDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGV 240

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI       ++ +A ++ + MV R     +VT+ TLI GLC++ R+ EA +L    M+  
Sbjct: 241 LIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMS-MKKL 299

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK-------IEMDAGIYSSLISALFK 270
             +PD   + +L+KGLC  G++++AL + +EM+ D        I  D    S LI  L K
Sbjct: 300 GCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCK 359

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            G+  E   +L+ M +RGC  + VTY+ LI G C E     A  +   M   GC+ + I+
Sbjct: 360 EGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAIT 419

Query: 331 YNVILGGLCKDG 342
           Y  ++ GLC+ G
Sbjct: 420 YGTLMKGLCQTG 431



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 161/327 (49%), Gaps = 27/327 (8%)

Query: 7   RLACLPRL------------QKDPKLALQLFKN--PNPNPNDTEAHPLKPFRYNLLHYDL 52
           +L C+P +              + K+AL+L KN   + +P      P      N + Y +
Sbjct: 591 KLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKP------NAISYSI 644

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           II  L +    DE +++  ++K    ++P  I + ++I  + R+   + A  +F+EM   
Sbjct: 645 IIDGLCKCGREDEARELFKEMKA-LGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDI 703

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDA 171
            VQ  V  F+ L++     GK+    EL ++M ++   P+  +Y  L+ G  ++ R+ +A
Sbjct: 704 GVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEA 763

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR-----VYNVKPDGQVF 226
            ++F +M K    P +VT+GTL+ GLC    +  AL+L + ++        N KPD   +
Sbjct: 764 TQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISY 823

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
           + +I GLC  G    A  + +EM    +  +   Y+SLI    ++G+  +   +  EM +
Sbjct: 824 SIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVD 883

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAF 313
           +G + N+VTY+ +I GFCKE   + A 
Sbjct: 884 QGVQLNAVTYSVMIHGFCKEGQIDKAL 910



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 166/365 (45%), Gaps = 48/365 (13%)

Query: 20  LALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRI 79
           +ALQL +      NDT  + +K  +  L+ Y +II  L + +  DE +++  ++K    I
Sbjct: 435 IALQLHQEM---LNDTGRYGIK-CKPTLISYSIIIDGLCKDRREDEARELFEEMKAQG-I 489

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           +P  I +  +I  +  +   E+A  +F+EM    +Q  V   + L++     GK+    +
Sbjct: 490 MPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANK 549

Query: 140 LFQI-MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L ++ +++    D  +   L+ G  +  R+  A ++F +M K    P +VT  TL+ GLC
Sbjct: 550 LLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLC 609

Query: 199 --------LEL---------------------------------RVDEALKLKEDIMRVY 217
                   LEL                                 R DEA +L ++ M+  
Sbjct: 610 QSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKE-MKAL 668

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            V PD   + SLI G C  G+   A  +  EMV   ++ D   +S LI  L K G+  E 
Sbjct: 669 GVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEA 728

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +L+ M +RGC PN+VTY  L+ G C  +    A  +  +M   GC  + ++Y  ++ G
Sbjct: 729 NELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKG 788

Query: 338 LCKDG 342
           LC+ G
Sbjct: 789 LCQTG 793



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 18/255 (7%)

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ------IMEKYVSPDACS 154
           R   +F +  +FN+       N L N K     L  M  + +      I+   + PD  +
Sbjct: 2   RLAGLFPDSFTFNI-----LINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTT 56

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
            ++LI       ++ +A ++ + M++R     +VT+ TLI GLC+E R+ EA  L    M
Sbjct: 57  SSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMS-M 115

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD------KIEMDAGIYSSLISAL 268
           +    +PD   + +L+KGLC  G +++AL + +EM+ D      K +     YS +I  L
Sbjct: 116 QKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGL 175

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K  R++E   + KEMK +G  P+ ++Y +LI GFC    +E A  + +EM D G + + 
Sbjct: 176 CKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDV 235

Query: 329 ISYNVILGGLCKDGK 343
            +  V++   CK+GK
Sbjct: 236 TTSGVLIDMFCKEGK 250



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 8/249 (3%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIH 160
           A ++ + M      + +  ++TL+       ++     LF  M+K    PDA +Y  L+ 
Sbjct: 73  ANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMK 132

Query: 161 GCVVSRRLEDAWKVFDEMVKR------RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           G   +  +  A ++  EM+        + +PTL+++  +I GLC + R DEA +L ++ M
Sbjct: 133 GLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKE-M 191

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           +   + PD   + SLI G C  G+   A  +  EM+   I+ D      LI    K G+ 
Sbjct: 192 KAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKV 251

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            E   +L+ M  RGC  + VTY+ LI G C +     A  +   M   GC+ + I+Y  +
Sbjct: 252 IEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTL 311

Query: 335 LGGLCKDGK 343
           + GLC+ GK
Sbjct: 312 MKGLCQTGK 320



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 64/138 (46%), Gaps = 9/138 (6%)

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLAL---------GVKEEMVRDKIEMDAGIYSSL 264
           MR+  + PD   F  LI  LC V  ++  L         G   ++V   I  D    S L
Sbjct: 1   MRLAGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSML 60

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           I  L K G+  E   +L+ M +RGC  + VTY+ LI G C E     A  +   M   GC
Sbjct: 61  IDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGC 120

Query: 325 KANPISYNVILGGLCKDG 342
           + + I+Y  ++ GLC+ G
Sbjct: 121 RPDAITYGTLMKGLCQTG 138


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 152/320 (47%), Gaps = 19/320 (5%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  +   Y  +IT L +AK  D+   +  ++K    + P    +  +I  + +A L+E
Sbjct: 446 KGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKK-VGVNPDVYTYTILIDSFCKAGLIE 504

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
           +A   FDEM S      V  +  LL+  L   +L +  ++F  M      P+A +Y+ LI
Sbjct: 505 QAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALI 564

Query: 160 HGCVVSRRLEDAWKVFDEMVKRR----------------LQPTLVTFGTLIYGLCLELRV 203
            G   +  ++ A +V+ +++                   + P +VT+G L+ GLC   +V
Sbjct: 565 DGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKV 624

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
            +A  L  D M     +P+  V+ +L+ G C VGE+  A  V   M +         Y+S
Sbjct: 625 SDAHDLL-DAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTS 683

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LI  +FK GR +    +L +M +  C PN VTY A++ G CK  + E A  +L  M  KG
Sbjct: 684 LIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKG 743

Query: 324 CKANPISYNVILGGLCKDGK 343
           C  N ++Y  ++ GL K GK
Sbjct: 744 CSPNVVTYTALIDGLGKAGK 763



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 134/299 (44%), Gaps = 11/299 (3%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           +I+ L  A +F+E    LH+++ ++ I P  + +  ++  + + + L    ++ + M + 
Sbjct: 277 MISGLMEASLFNEAMSFLHRMRCNSYI-PNVVTYRTLLTGFLKKKQLGWCKRIINMMMTE 335

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRR---- 167
               +   FN+L++            +LF  M      P    YNI I G +  R     
Sbjct: 336 GCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFI-GSICGREELPN 394

Query: 168 ---LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L+ A KV++EM+        +        LC   + ++A ++ +++MR   V PD  
Sbjct: 395 PELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFV-PDAS 453

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  +I  LC    +  A  + +EM +  +  D   Y+ LI +  KAG   +  +   EM
Sbjct: 454 TYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEM 513

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  GC PN VTY AL+  + K +    A  I   M    C  N I+Y+ ++ GLCK G+
Sbjct: 514 RSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGE 572



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 126/276 (45%), Gaps = 19/276 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  ++    ++K   +   I H++  D    P  I +  +I    +A  +++A ++
Sbjct: 521 NVVTYTALLHAYLKSKQLYQANDIFHRMVGDA-CYPNAITYSALIDGLCKAGEIQKACEV 579

Query: 106 FDEM--SSFNVQMTVKF--------------FNTLLNPKLTCGKLDRMKELFQIM-EKYV 148
           + ++  +S N++    F              +  L+N      K+    +L   M     
Sbjct: 580 YAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGC 639

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
            P+   Y+ L+ G      ++ A +VF  M K    P++ T+ +LI  +  + R+D A+K
Sbjct: 640 EPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMK 699

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           +   +++  +  P+   + +++ GLC  GE   AL +   M +     +   Y++LI  L
Sbjct: 700 VLSQMLKD-SCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGL 758

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
            KAG+ +    +  +MK +GC PN VTY  LI+  C
Sbjct: 759 GKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCC 794



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 110/252 (43%), Gaps = 8/252 (3%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKY 147
           V+GF   AR  ER L+   E+   +  +  +  N L+      G   + ++EL ++ +  
Sbjct: 143 VLGFEDPARTAERLLR---EIGEDDRDVLGRLLNVLVRRCCLQGLWGEALEELGRLKDFG 199

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
             P A +YN L+     + ++E A++V  EM          T G+    LC E R  +AL
Sbjct: 200 YRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGSFAQALCKEGRWGDAL 259

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
               D++   + K D  +   +I GL      + A+     M  +    +   Y +L++ 
Sbjct: 260 ----DLLEREDFKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTG 315

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
             K  +      I+  M   GC P+   +N+L+  +C  ED+  A+ + + M   GC   
Sbjct: 316 FLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPG 375

Query: 328 PISYNVILGGLC 339
            + YN+ +G +C
Sbjct: 376 YVVYNIFIGSIC 387



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 120/270 (44%), Gaps = 8/270 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I ++ +    D   ++L Q+  D+   P  + +  ++    +    E+AL +   M
Sbjct: 681 YTSLIDRMFKDGRLDLAMKVLSQMLKDS-CNPNVVTYTAMVDGLCKTGETEKALNLLSLM 739

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
                   V  +  L++     GK+D   ELF Q+  K  +P+  +Y ILI+ C  +  L
Sbjct: 740 EKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAAGLL 799

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           +DA  + DEM +      L  + T + G     R   +L L E+ M  ++  P   V+  
Sbjct: 800 DDAHLLLDEMKQTHWPKYLQGYRTTVQGF--SKRFLASLGLLEE-MESHDTAPIAPVYGM 856

Query: 229 LIKGLCAVGELSLALGVKEEM--VRDKIEMDA-GIYSSLISALFKAGRKNEFPAILKEMK 285
           LI      G L  AL + +EM  V   + M +  +++SLI AL  + +  E  A+  EM+
Sbjct: 857 LIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQALCLSSQVEEAVALYSEMR 916

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            RG  P+   +  L+ G  +   +  A  +
Sbjct: 917 RRGIVPDLSAFVCLVKGLIERNKWNEALQL 946



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 130/302 (43%), Gaps = 8/302 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + YD ++    +    D  Q++  ++      +P    + ++I    +   L+ A+++
Sbjct: 642 NQIVYDALVDGFCKVGEIDSAQEVFLRMTK-CGYLPSVHTYTSLIDRMFKDGRLDLAMKV 700

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
             +M   +    V  +  +++     G+ ++   L  +MEK   SP+  +Y  LI G   
Sbjct: 701 LSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGK 760

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + +++   ++F +M  +   P  VT+  LI   C    +D+A  L +++ + +  K   Q
Sbjct: 761 AGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYL-Q 819

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + + ++G         +LG+ EEM        A +Y  LI +  KAGR      + KEM
Sbjct: 820 GYRTTVQGFSK--RFLASLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEM 877

Query: 285 KERGCKPNSVT---YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            E     N  +   + +LI   C     E A  +  EM  +G   +  ++  ++ GL + 
Sbjct: 878 MEVSSSLNMASKDMHTSLIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIER 937

Query: 342 GK 343
            K
Sbjct: 938 NK 939



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 8/151 (5%)

Query: 192 TLIYGLCLELRVDEALKLKEDIMRV--YNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
            L+   CL+    EAL   E++ R+  +  +P    + +L++ L + G++ +A  V++EM
Sbjct: 174 VLVRRCCLQGLWGEAL---EELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEM 230

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
                 MD     S   AL K GR  +    L  ++    K ++V    +ISG  +   F
Sbjct: 231 SASGFCMDRSTVGSFAQALCKEGRWGD---ALDLLEREDFKLDTVLCTQMISGLMEASLF 287

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             A + L  M       N ++Y  +L G  K
Sbjct: 288 NEAMSFLHRMRCNSYIPNVVTYRTLLTGFLK 318



 Score = 41.2 bits (95), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 4/101 (3%)

Query: 247 EEMVRDKIEMDAGIYSSLISALFK----AGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
           E ++R+  E D  +   L++ L +     G   E    L  +K+ G +P++VTYNAL+  
Sbjct: 154 ERLLREIGEDDRDVLGRLLNVLVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALVQV 213

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
                  E AF +  EM   G   +  +       LCK+G+
Sbjct: 214 LASAGQVEMAFRVQKEMSASGFCMDRSTVGSFAQALCKEGR 254


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 141/295 (47%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ ++  L +    +E   +L ++  D    P  + + ++I   G+ +    A ++F EM
Sbjct: 72  YNALLNGLCKMGRLEEAIDLLRKIV-DNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEM 130

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
           +S  + +    +  L+   L  GK+ +   +++ M  +   PD  + + +I G   + R+
Sbjct: 131 ASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRI 190

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
             A ++F  M  R L P  V +  LI+GLC   ++D AL++   + + +   PD   +  
Sbjct: 191 GAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF-CTPDTITYNI 249

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI GLC  G+++ A    +EM+    + D   Y+ LIS   KAG  +    +  +M    
Sbjct: 250 LIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSR 309

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C PN VTY  LISG CK      A      M ++GC  +   Y+ ++ GLCK GK
Sbjct: 310 CSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGK 364



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 149/297 (50%), Gaps = 9/297 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI---IFCNVIGFYGRARLLERALQMF 106
           + ++I  L +A M  +     H L  +T      I    +  ++ +  + + ++ A+ + 
Sbjct: 2   FSILINGLVKAGMLIQA----HSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALM 57

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVS 165
           +++++     T+  +N LLN     G+L+   +L  +I++   +PD  +Y  LI G    
Sbjct: 58  EKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKK 117

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
           +R  +A+K+F EM  R L    V +  LI GL    ++ +A  + +  M      PD   
Sbjct: 118 KRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYK-TMTSQGCVPDVVT 176

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
            +++I GLC  G +  A+ + + M    +  +  +YS+LI  L KA + +    +L +MK
Sbjct: 177 LSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMK 236

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +  C P+++TYN LI G CK  D  AA    DEM + GCK +  +YN+++ G CK G
Sbjct: 237 KAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAG 293



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 111/240 (46%), Gaps = 35/240 (14%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           + P E+++  +I    +AR ++ AL+M  +M           +N L++     G +   +
Sbjct: 205 LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAAR 264

Query: 139 ELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
             F +++E    PD  +YNILI G   +   + A  VFD+M   R  P +VT+GTLI GL
Sbjct: 265 AFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGL 324

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI--- 254
           C   ++ +A  L    M+     PD  V++SL+ GLC  G+L     + +EM R  +   
Sbjct: 325 CKRRQLTKA-SLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANS 383

Query: 255 --------------EMDAGI----------------YSSLISALFKAGRKNEFPAILKEM 284
                          +D  +                Y+S+ISAL K+G+ NE  A+ +EM
Sbjct: 384 QTRTRLIFHLCKANRVDEAVSLFNAIRKEGMPHPYAYNSIISALIKSGKVNEGQAVYQEM 443



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 1/190 (0%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +++ILI+G V +  L  A  +  E         + T+ T++  L    ++ EA+ L E I
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
                  P    + +L+ GLC +G L  A+ +  ++V +    D   Y+SLI  L K  R
Sbjct: 61  T-ANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKR 119

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   + KEM  RG   ++V Y ALI G  +      A ++   M  +GC  + ++ + 
Sbjct: 120 SFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLST 179

Query: 334 ILGGLCKDGK 343
           ++ GLCK G+
Sbjct: 180 MIDGLCKAGR 189


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 149/295 (50%), Gaps = 4/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ II+ L +A   +E    L +++    + P  + F   I  Y +   +  A + FDEM
Sbjct: 511 YNAIISCLSKAGKMEEASTYLLEIQ-GRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEM 569

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
               +      +  L+N     G L     +F+ +    V PD  + +  IHG + + R+
Sbjct: 570 LDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRV 629

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           ++A KVF E+ ++ L P + T+ +LI G C +  V++A +L  D M +  + P+  ++ +
Sbjct: 630 QEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFEL-HDEMCLKGIAPNIFIYNA 688

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ GLC  G++  A  + + M    +E D+  YS++I    K+    E  ++  EM  +G
Sbjct: 689 LVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKG 748

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +P+S  YNAL+ G CKE D E A  +  EM  KG  A  +S+N ++ G CK  K
Sbjct: 749 VQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCK 802



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 152/331 (45%), Gaps = 38/331 (11%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           + Y  +I  L   K      ++L ++   + + P  +++  +I  Y     +E A ++ D
Sbjct: 439 VSYGAMINGLCHCKDLSLANKLLEKMTF-SGLKPNVVVYSILIMAYASEGRIEEARRLLD 497

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNILIHGCVVSR 166
            MS   V   +  +N +++     GK++     L +I  + + PDA ++   I G   + 
Sbjct: 498 GMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTG 557

Query: 167 RLEDAWKVFDEMVK------------------------------RRLQ-----PTLVTFG 191
           ++ +A K FDEM+                               RRL      P + T  
Sbjct: 558 KMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCS 617

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
             I+GL    RV EALK+  + ++   + PD   ++SLI G C  GE+  A  + +EM  
Sbjct: 618 AFIHGLLKNGRVQEALKVFSE-LKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCL 676

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
             I  +  IY++L+  L K+G       +   M E+G +P+SVTY+ +I G+CK E+   
Sbjct: 677 KGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAE 736

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           AF++  EM  KG + +   YN ++ G CK+G
Sbjct: 737 AFSLFHEMPSKGVQPHSFVYNALVHGCCKEG 767



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 151/290 (52%), Gaps = 9/290 (3%)

Query: 54  ITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFN 113
           + K GR +   E  ++  +LK +  +VP    + ++I  + +   +E+A ++ DEM    
Sbjct: 623 LLKNGRVQ---EALKVFSELK-EKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKG 678

Query: 114 VQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAW 172
           +   +  +N L++     G + R ++LF  M EK + PD+ +Y+ +I G   S  + +A+
Sbjct: 679 IAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAF 738

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-KEDIMRVYNVKPDGQVFASLIK 231
            +F EM  + +QP    +  L++G C E  +++A+ L +E + + +        F +LI 
Sbjct: 739 SLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS---FNTLID 795

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           G C   ++  A  + +EM+  +I  D   Y+++I    KAG+  E   + KEM+ER    
Sbjct: 796 GYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIV 855

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           ++VTY +L+ G+ K       F + ++M  KG K + ++Y +++   CK+
Sbjct: 856 DTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKE 905



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 147/292 (50%), Gaps = 5/292 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQMFDE 108
           +D++I    R  M DE   +    K+D+ ++   +I CN ++    +  ++E   ++++ 
Sbjct: 161 FDILIDSYKRMGMLDEAANVFFVAKNDSILIS--LIRCNSLLKDLLKCGMMELFWKVYNG 218

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNILIHGCVVSRR 167
           M    +   V  +  L+      G L   K  L ++ EK ++P+   Y+++I G      
Sbjct: 219 MLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGD 278

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           +++A ++   M ++ L P   T+  +  GLC   R++EA KL  + M+   +KPD    +
Sbjct: 279 IDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEA-KLTFEEMQKTGLKPDYNACS 337

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +LI G    G++   L +K+ MV   I ++   Y+ LI  L K G+  +   ILK M   
Sbjct: 338 ALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTL 397

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           GCKPNS T+  LI G+C+E +   A  +LDEM  +    + +SY  ++ GLC
Sbjct: 398 GCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLC 449



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 144/298 (48%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y +I   L RAK  +E +    +++  T + P       +I  + R   ++  L++
Sbjct: 297 NTYTYTIITAGLCRAKRMNEAKLTFEEMQK-TGLKPDYNACSALIDGFMREGDIDEVLRI 355

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            D M S  + + +  +N L++     GK+++  E+ + M      P++ ++ +LI G   
Sbjct: 356 KDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCR 415

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +  A ++ DEM KR L P+ V++G +I GLC    +  A KL E  M    +KP+  
Sbjct: 416 EHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEK-MTFSGLKPNVV 474

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           V++ LI    + G +  A  + + M    +  D   Y+++IS L KAG+  E    L E+
Sbjct: 475 VYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEI 534

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + RG KP++VT+ A I G+ K      A    DEM D G   N   Y V++ G  K G
Sbjct: 535 QGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAG 592



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 137/295 (46%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y L+I  + +    DE  ++   +  +  +VP    +  +     RA+ +  A   F+EM
Sbjct: 266 YSLVIEGMCQVGDIDEAVELKRSMG-EKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEM 324

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILIHGCVVSRRL 168
               ++      + L++  +  G +D +  +  +M     P +  +YN+LIHG     ++
Sbjct: 325 QKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKM 384

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E A ++   MV    +P   TF  LI G C E  +  AL+L ++ M   N+ P    + +
Sbjct: 385 EKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDE-MEKRNLVPSAVSYGA 443

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I GLC   +LSLA  + E+M    ++ +  +YS LI A    GR  E   +L  M   G
Sbjct: 444 MINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSG 503

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             P+   YNA+IS   K    E A T L E+  +G K + +++   + G  K GK
Sbjct: 504 VAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGK 558



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 124/262 (47%), Gaps = 39/262 (14%)

Query: 84  IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQI 143
           ++F  +I  Y R  +L+ A  +F    + ++ +++   N+LL   L CG    M ELF  
Sbjct: 159 VVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCG----MMELF-- 212

Query: 144 MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL--EL 201
                                       WKV++ M+  ++   + T+  L+  LC   +L
Sbjct: 213 ----------------------------WKVYNGMLDAKMGFDVYTYTYLVGALCKTGDL 244

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
           R  + + ++   M    + P+  +++ +I+G+C VG++  A+ +K  M    +  +   Y
Sbjct: 245 RGAKRVLIE---MDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTY 301

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           + + + L +A R NE     +EM++ G KP+    +ALI GF +E D +    I D M  
Sbjct: 302 TIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVS 361

Query: 322 KGCKANPISYNVILGGLCKDGK 343
            G   N I+YNV++ GLCK GK
Sbjct: 362 CGIPINLITYNVLIHGLCKFGK 383



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 120/235 (51%), Gaps = 2/235 (0%)

Query: 86   FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM- 144
            F  +I  Y ++  ++ A Q+F EM +  +      + T+++     GK++    LF+ M 
Sbjct: 790  FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQ 849

Query: 145  EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
            E+ +  D  +Y  L++G     +  + + +F++MV + ++P  VT+G +IY  C E  + 
Sbjct: 850  ERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLV 909

Query: 205  EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
            EA KL+++++    +   G +   LI  LC   +L+ A  + +EM    ++      ++L
Sbjct: 910  EAFKLRDEVVG-KGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTL 968

Query: 265  ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            + +  +AG+ +E   + + +K  G  P++ T   L++G   + D E A  ++ ++
Sbjct: 969  VRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQL 1023


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 176/338 (52%), Gaps = 7/338 (2%)

Query: 12  PRLQKDPKL-ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           P L K   L  LQL + P    +       K F +N   Y L+I  LGR++  +  +  +
Sbjct: 91  PSLSKTTVLQTLQLIRTPAKALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNAARNFV 150

Query: 71  HQLKHDTRIVPK--EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
             ++  +    K  +  F ++I  YG A L + ++++F  M    V  +V  FN+LL+  
Sbjct: 151 FSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIV 210

Query: 129 LTCGKLDRMKELF-QIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
           L  G+    K+LF ++++ Y V+PD  ++NILI G  ++  +++ +  F EM + +  P 
Sbjct: 211 LKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPD 270

Query: 187 LVTFGTLIYGLCLELRVDEALK-LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
           +VT+ TL+ GLC   +V  A   +K  + +  N+ P+   + +LI+G C   +++ AL +
Sbjct: 271 VVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSL 330

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM-KERGCKPNSVTYNALISGFC 304
             EMV   ++ +   Y++LI  L +A + ++   IL+ M  + G  P++ T N LI   C
Sbjct: 331 LAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHC 390

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
                E AF++ ++M +   + +  +Y+V++  LC+ G
Sbjct: 391 TMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRG 428



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 142/300 (47%), Gaps = 14/300 (4%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           I+ K GR  M    +Q+  ++     + P    F  +I  +    +++     F EMS F
Sbjct: 209 IVLKRGRTSM---AKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRF 265

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY---VSPDACSYNILIHGCVVSRRLE 169
                V  +NTL++     GK+     + + M K    +SP+  +Y  LI G  + + + 
Sbjct: 266 KCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMA 325

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           +A  +  EMV R L+P  +T+ TLI GLC   ++D+  ++ E ++      PD     +L
Sbjct: 326 EALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTL 385

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG---RKNEFPAILKE--- 283
           IK  C +G+L  A  V E+M   +++ D+  YS L+ +L + G   R  EF   L E   
Sbjct: 386 IKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEI 445

Query: 284 -MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            + + GCKP    YN +    C     + A  +  ++  +G + +P SY  ++ G C++G
Sbjct: 446 LLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQ-DPPSYKTLILGHCREG 504



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 99/191 (51%), Gaps = 2/191 (1%)

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           +N LI     +   +++ KVF  M +  + P++VTF +L+  +    R   A +L ++++
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
             Y V PD   F  LI+G C    +       +EM R K + D   Y++L+  L +AG+ 
Sbjct: 228 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKV 287

Query: 275 NEFPAILKEM--KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
                ++K M  K     PN VTY  LI G+C ++D   A ++L EM  +G K N I+YN
Sbjct: 288 KIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYN 347

Query: 333 VILGGLCKDGK 343
            ++ GLC+  K
Sbjct: 348 TLIQGLCEAQK 358



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 121/261 (46%), Gaps = 13/261 (4%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP   N + Y+ +I  L  A+  D++++IL  +  D   +P       +I  +     L
Sbjct: 339 LKP---NKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKL 395

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYV-------SPD 151
           E A  +F++MS   VQ     ++ L+      G   R +E F ++ EK +        P 
Sbjct: 396 EEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPL 455

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +YN +      + + + A +VF +++KR  Q    ++ TLI G C E   +    L  
Sbjct: 456 VAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDP-PSYKTLILGHCREGTPEAGFDLLV 514

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            ++R  +  PD + +  +I GL   G+  LA    E+M++        I+ S+++AL + 
Sbjct: 515 LMLR-RDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEK 573

Query: 272 GRKNEFPAILKEMKERGCKPN 292
           G  +E  +++K M ER  + N
Sbjct: 574 GCAHESASLVKLMLERRIRQN 594


>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 176/338 (52%), Gaps = 7/338 (2%)

Query: 12  PRLQKDPKL-ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           P L K   L  LQL + P    +       K F +N   Y L+I  LGR++  +  +  +
Sbjct: 91  PSLSKTTVLQTLQLIRTPAKALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNAARNFV 150

Query: 71  HQLKHDTRIVPK--EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
             ++  +    K  +  F ++I  YG A L + ++++F  M    V  +V  FN+LL+  
Sbjct: 151 FSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIV 210

Query: 129 LTCGKLDRMKELF-QIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
           L  G+    K+LF ++++ Y V+PD  ++NILI G  ++  +++ +  F EM + +  P 
Sbjct: 211 LKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPD 270

Query: 187 LVTFGTLIYGLCLELRVDEALK-LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
           +VT+ TL+ GLC   +V  A   +K  + +  N+ P+   + +LI+G C   +++ AL +
Sbjct: 271 VVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSL 330

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM-KERGCKPNSVTYNALISGFC 304
             EMV   ++ +   Y++LI  L +A + ++   IL+ M  + G  P++ T N LI   C
Sbjct: 331 LAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHC 390

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
                E AF++ ++M +   + +  +Y+V++  LC+ G
Sbjct: 391 TMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRG 428



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 142/300 (47%), Gaps = 14/300 (4%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           I+ K GR  M    +Q+  ++     + P    F  +I  +    +++     F EMS F
Sbjct: 209 IVLKRGRTSM---AKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRF 265

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY---VSPDACSYNILIHGCVVSRRLE 169
                V  +NTL++     GK+     + + M K    +SP+  +Y  LI G  + + + 
Sbjct: 266 KCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMA 325

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           +A  +  EMV R L+P  +T+ TLI GLC   ++D+  ++ E ++      PD     +L
Sbjct: 326 EALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTL 385

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG---RKNEFPAILKE--- 283
           IK  C +G+L  A  V E+M   +++ D+  YS L+ +L + G   R  EF   L E   
Sbjct: 386 IKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEI 445

Query: 284 -MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            + + GCKP    YN +    C     + A  +  ++  +G + +P SY  ++ G C++G
Sbjct: 446 LLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQ-DPPSYKTLILGHCREG 504



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 99/191 (51%), Gaps = 2/191 (1%)

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           +N LI     +   +++ KVF  M +  + P++VTF +L+  +    R   A +L ++++
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
             Y V PD   F  LI+G C    +       +EM R K + D   Y++L+  L +AG+ 
Sbjct: 228 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKV 287

Query: 275 NEFPAILKEM--KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
                ++K M  K     PN VTY  LI G+C ++D   A ++L EM  +G K N I+YN
Sbjct: 288 KIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYN 347

Query: 333 VILGGLCKDGK 343
            ++ GLC+  K
Sbjct: 348 TLIQGLCEAQK 358



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 142/316 (44%), Gaps = 17/316 (5%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP   N + Y+ +I  L  A+  D++++IL  +  D   +P       +I  +     L
Sbjct: 339 LKP---NKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKL 395

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYV-------SPD 151
           E A  +F++MS   VQ     ++ L+      G   R +E F ++ EK +        P 
Sbjct: 396 EEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPL 455

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +YN +      + + + A +VF +++KR  Q    ++ TLI G C E   +    L  
Sbjct: 456 VAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDP-PSYKTLILGHCREGTPEAGFDLLV 514

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            ++R  +  PD + +  +I GL   G+  LA    E+M++        I+ S+++AL + 
Sbjct: 515 LMLR-RDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEK 573

Query: 272 GRKNEFPAILKEMKERGCKPN----SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           G  +E  +++K M ER  + N    + T   L+S  C+      A  +L    +K    +
Sbjct: 574 GCAHESASLVKLMLERRIRQNIDLSTHTMEELVSFLCQSRKLLEAQKMLLFSLEKRQSVD 633

Query: 328 PISYNVILGGLCKDGK 343
               + ++ GLCK  K
Sbjct: 634 IDMCSTVISGLCKAHK 649


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 160/304 (52%), Gaps = 3/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +  + +++ Y ++++ L ++   DE   +LH+++    + P  + +  +I    +   +E
Sbjct: 404 QGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEME-VIGLKPDLLTYSVLIHGLCKRGAVE 462

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
            A+++++EM S  +       + +++     G +   +  F  + K  V+ +   YNI+I
Sbjct: 463 EAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMI 522

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G      + +A + + +++++ + PT+VTF +LIYG C + ++ EA+KL  D ++V+ +
Sbjct: 523 DGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLL-DTIKVHGL 581

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P    + +L+ G C  G++     +  EM    I+     Y+ ++  L K GR +E   
Sbjct: 582 VPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQ 641

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +LK M  RG  P+ +TYN +I  FCK  D + AF + ++M     + +P++YNV++ GLC
Sbjct: 642 LLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLC 701

Query: 340 KDGK 343
             G 
Sbjct: 702 VYGN 705



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 159/318 (50%), Gaps = 18/318 (5%)

Query: 33  NDTEAHPLKP--FRYNLLHYDLIITKL--GRAKMFDEMQQILHQLKHDTRIVPKEIIFCN 88
           ND E H ++P    YN+L     I  L  G  K+   M  +L+ L  D  +V   I+ C 
Sbjct: 329 NDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRM--LLNGLNPD--LVTYTILIC- 383

Query: 89  VIGFYGRARL--LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK 146
                G  ++  +E + ++ ++M S  +++++  +  LL+     G++D    L   ME 
Sbjct: 384 -----GHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEV 438

Query: 147 Y-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
             + PD  +Y++LIHG      +E+A ++++EM  +R+ P       +I GL  +  + E
Sbjct: 439 IGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISE 498

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           A ++  D +   +V  +  ++  +I G   +G +  A+   ++++   I      ++SLI
Sbjct: 499 A-QMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLI 557

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
               K G+  E   +L  +K  G  P SVTY  L++G+C+E D  + F +L EM  K  K
Sbjct: 558 YGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIK 617

Query: 326 ANPISYNVILGGLCKDGK 343
              I+Y V++ GLCK+G+
Sbjct: 618 PTQITYTVVVKGLCKEGR 635



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 127/249 (51%), Gaps = 2/249 (0%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDAC 153
           R   L+ A+    E        +V  FN L++     G +D  K  F +M KY + PD  
Sbjct: 247 RQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVY 306

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           SYNIL+HG  V+  +E+A +  ++M    ++P +VT+  L  G  +   +  A K+ +  
Sbjct: 307 SYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQR- 365

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M +  + PD   +  LI G C +G +  +  +KE+M+   +++    Y+ L+S+L K+GR
Sbjct: 366 MLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGR 425

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +E   +L EM+  G KP+ +TY+ LI G CK    E A  + +EM  K    N    + 
Sbjct: 426 IDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSA 485

Query: 334 ILGGLCKDG 342
           I+ GL + G
Sbjct: 486 IISGLFEKG 494



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 145/311 (46%), Gaps = 6/311 (1%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           ++ E   LKP   +LL Y ++I  L +    +E  ++  ++    RI P   +   +I  
Sbjct: 434 HEMEVIGLKP---DLLTYSVLIHGLCKRGAVEEAIELYEEMC-SKRIYPNSFVCSAIISG 489

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPD 151
                 +  A   FD ++  +V   +  +N +++     G + + ++   QI+EK +SP 
Sbjct: 490 LFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPT 549

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             ++N LI+G     +L +A K+ D +    L PT VT+ TL+ G C E  +     +  
Sbjct: 550 IVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLH 609

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           + M    +KP    +  ++KGLC  G L  ++ + + M    +  D   Y+++I +  KA
Sbjct: 610 E-MEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKA 668

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
               +   +  +M +   +P+ VTYN LI+G C   + + A  +L  + D+  +   ++Y
Sbjct: 669 HDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAY 728

Query: 332 NVILGGLCKDG 342
             I+   C  G
Sbjct: 729 TTIIKAHCAKG 739



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 123/253 (48%), Gaps = 7/253 (2%)

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLL-NPKLTCGKLDRMKELF-QIMEKYVSP 150
           Y RA ++  AL +  +M   N+Q+++  +N+LL N + T    D M +++ +I    V  
Sbjct: 178 YSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHT----DIMWDVYNEIKASGVPQ 233

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           +  +  ILI G     RL+DA     E       P++V+F  L+ G C    VD A K  
Sbjct: 234 NEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVA-KSF 292

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
             +M  Y + PD   +  L+ GLC  G +  AL    +M    +E D   Y+ L +    
Sbjct: 293 FCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRI 352

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            G  +    +++ M   G  P+ VTY  LI G C+  + E +F + ++M  +G K + ++
Sbjct: 353 LGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVT 412

Query: 331 YNVILGGLCKDGK 343
           Y V+L  LCK G+
Sbjct: 413 YTVLLSSLCKSGR 425



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 107/229 (46%), Gaps = 4/229 (1%)

Query: 79  IVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           I P  + F ++I GF  + +L E A+++ D +    +  T   + TL+N     G +  M
Sbjct: 546 ISPTIVTFNSLIYGFCKKGKLAE-AVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSM 604

Query: 138 KELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
            ++   ME K + P   +Y +++ G     RL ++ ++   M  R L P  +T+ T+I  
Sbjct: 605 FDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQS 664

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
            C    + +A +L   +++ ++++P    +  LI GLC  G L  A  +   +    I +
Sbjct: 665 FCKAHDLQKAFQLHNQMLQ-HSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRL 723

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
               Y+++I A    G          +M ERG + +   Y+A+I+  CK
Sbjct: 724 TKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCK 772



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 111/246 (45%), Gaps = 10/246 (4%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           +VP  + +  ++  Y     +     M  EM +  ++ T   +  ++      G+L    
Sbjct: 581 LVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESV 640

Query: 139 ELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           +L + M  + + PD  +YN +I     +  L+ A+++ ++M++  LQP+ VT+  LI GL
Sbjct: 641 QLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGL 700

Query: 198 CLELRVDEA----LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           C+   + +A    + L++  +R+  V      + ++IK  CA G++  AL    +MV   
Sbjct: 701 CVYGNLKDADRLLVTLQDQSIRLTKV-----AYTTIIKAHCAKGDVQNALVFFHQMVERG 755

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
            E+    YS++I+ L K     +       M   G  P+      +++ F +  D  + F
Sbjct: 756 FEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVF 815

Query: 314 TILDEM 319
            I   M
Sbjct: 816 EIFAMM 821


>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 161/330 (48%), Gaps = 40/330 (12%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS-S 111
           +I     +  F+ ++++L++++ + R+  ++  F  +   YG+A L  +A+++F  MS  
Sbjct: 78  LIENYAYSSDFNSLEKVLNRMRLENRVFSEKSFFV-MFKAYGKAHLPNKAIELFYRMSFE 136

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM----EKYVSPDACSYNILIHGCVVSRR 167
           F  + TVK FN++LN  +  G  DR  E +  +    +  + P+  S+N++I        
Sbjct: 137 FYCKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLIIKSMCKLGL 196

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL------------------ 209
           +++A ++F EM  R+  P   T+ TL+ GLC   R+DEA+ L                  
Sbjct: 197 VDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNV 256

Query: 210 -------KEDIMRVYNVK---------PDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
                  K D  RV  +          P+   + +LI GLC  G+L  AL + + MV  K
Sbjct: 257 LINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSK 316

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
              +   Y ++I+ L K GR  +   +L  M+ERG   N   Y+ L+SG  KE   E A 
Sbjct: 317 CVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGLFKEGKSEEAM 376

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +  E  DKGCK N + Y+ ++ GLC+D K
Sbjct: 377 RLFKESMDKGCKLNTVLYSALVDGLCRDRK 406



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 153/300 (51%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+L ++LII  + +  + D   ++  ++    + VP    +C ++    +   ++ A+ +
Sbjct: 180 NVLSFNLIIKSMCKLGLVDNAIELFREMPV-RKCVPDAYTYCTLMDGLCKVDRIDEAVSL 238

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            DEM       +   FN L+N     G   R+ +L   M  K   P+  +YN LIHG  +
Sbjct: 239 LDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCL 298

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR-VDEALKLKEDIMRVYNVKPDG 223
             +L+ A  + D MV  +  P  VT+GT+I GL  + R +D A  L     R Y V  + 
Sbjct: 299 KGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIV--NE 356

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
            V++ L+ GL   G+   A+ + +E +    +++  +YS+L+  L +  + +E   IL E
Sbjct: 357 YVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSE 416

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M ++GC PN+ T+++L+ GF +  +   A  +  +M    C  N + Y+V++ GLCKDGK
Sbjct: 417 MTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDGK 476



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 128/264 (48%), Gaps = 4/264 (1%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK-LDRMK 138
           VP E+ +  +I        L++AL + D M S         + T++N  +  G+ LD  +
Sbjct: 283 VPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGAR 342

Query: 139 ELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            L  + E+    +   Y++L+ G     + E+A ++F E + +  +   V +  L+ GLC
Sbjct: 343 VLVLMEERGYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLC 402

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
            + + DEA+K+  + M      P+   F+SL+KG   VG    A+ V ++M +     + 
Sbjct: 403 RDRKPDEAMKILSE-MTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENE 461

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             YS LI  L K G+  E   +  +M   GC+P+ V Y+++I G C     E A  + +E
Sbjct: 462 VCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNE 521

Query: 319 M--GDKGCKANPISYNVILGGLCK 340
           M   +   + + I+YN++   LCK
Sbjct: 522 MLCLEPDSQPDVITYNILFNALCK 545



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 141/296 (47%), Gaps = 11/296 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLE--RA 102
           N + Y+ +I  L      D+   +L ++   ++ VP E+ +  +I G   + R L+  R 
Sbjct: 285 NEVTYNTLIHGLCLKGKLDKALSLLDRMV-SSKCVPNEVTYGTIINGLVKQGRALDGARV 343

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
           L + +E   + V   V  ++ L++     GK +    LF + M+K    +   Y+ L+ G
Sbjct: 344 LVLMEE-RGYIVNEYV--YSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDG 400

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
               R+ ++A K+  EM  +   P   TF +L+ G        +A+++ +D+ ++ N   
Sbjct: 401 LCRDRKPDEAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKI-NCAE 459

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   ++ LI GLC  G++  A+ V  +M+      D   YSS+I  L  AG   E   + 
Sbjct: 460 NEVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLY 519

Query: 282 KEMK--ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
            EM   E   +P+ +TYN L +  CK+     A  +L+ M D+GC  + ++ N+ L
Sbjct: 520 NEMLCLEPDSQPDVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFL 575


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 153/301 (50%), Gaps = 6/301 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ ++    R  M  E + +L ++K +  I P    +  ++  Y R   +++A  +
Sbjct: 244 DVVTYNTLLKAHCRKGMLGEARTLLARMKKEG-IAPTRATYNTLVSAYARLGWIKQATNV 302

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME--KYVSPDACSYNILIHGCV 163
            + M++F  +  +  +N L       GK+D   +L   ME    VSPD  +YN L+  C 
Sbjct: 303 VEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACF 362

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL-KLKEDIMRVYNVKPD 222
             +R  DA  + +EM  + ++ +LVT   ++ GLC E +++EAL +LK  +M    + PD
Sbjct: 363 KYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLK--MMTEEGLAPD 420

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + +LI   C    ++ A  + +EMVR  ++MD    ++L+  L K  R  E   +L+
Sbjct: 421 VITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLR 480

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
              +RG  P+ V+Y  +++ + KE   E A  + DEM  +    +  +YN ++ GLC  G
Sbjct: 481 SPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIG 540

Query: 343 K 343
           K
Sbjct: 541 K 541



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 126/273 (46%), Gaps = 13/273 (4%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           R+ P    F  ++  +     L  AL     M  F +   V  +NTLL      G L   
Sbjct: 205 RLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEA 264

Query: 138 KELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           + L   M+K  ++P   +YN L+        ++ A  V + M     +P L T+  L  G
Sbjct: 265 RTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAG 324

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC   +VDEA KLK+++  +  V PD   + +L+         S AL + EEM RDK   
Sbjct: 325 LCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEM-RDK--- 380

Query: 257 DAGIYSSLIS------ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
             G+ SSL++       L + G+  E    LK M E G  P+ +TYN LI  +CK  +  
Sbjct: 381 --GVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVA 438

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            AF ++DEM   G K +  + N +L  LCK+ +
Sbjct: 439 KAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKR 471



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 152/306 (49%), Gaps = 7/306 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR--IVPKEIIFCNVIGFYGRARL 98
           K  + +L+ +++++  L R     ++++ L +LK  T   + P  I +  +I  Y +AR 
Sbjct: 380 KGVKSSLVTHNIVVKGLCRE---GQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARN 436

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
           + +A  + DEM    ++M     NTLL       + +  +EL +   ++   PD  SY  
Sbjct: 437 VAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGT 496

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           ++       + E A  ++DEM KR+L P++ T+ TLI GLC   ++ EA+    ++M+  
Sbjct: 497 VMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMK-K 555

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + PD   +  +I   C  G+L  A     +M+ +  + D    ++L++ L   G+  + 
Sbjct: 556 GLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKA 615

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + +   E+G K + +TYN LI   CK+ D + A     +M  +G + +  +YNV+L  
Sbjct: 616 IKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSA 675

Query: 338 LCKDGK 343
           L + G+
Sbjct: 676 LSEAGR 681



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 159/338 (47%), Gaps = 44/338 (13%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  N L Y+L      + K ++E +++L         VP E+ +  V+  Y +    E A
Sbjct: 457 FTLNTLLYNLC-----KEKRYEEAEELLRSPPQRG-FVPDEVSYGTVMAAYFKENKPEPA 510

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHG 161
           L ++DEMS   +  ++  +NTL+    T GKL + + +L ++M+K + PD  +YNI+IH 
Sbjct: 511 LYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHA 570

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 LE A++  ++M++   +P +VT  TL+ GLCL  ++++A+KL E        K 
Sbjct: 571 YCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAE-KGKKV 629

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +LI+ LC  G++  AL    +M    ++ DA  Y+ ++SAL +AGR  E   +L
Sbjct: 630 DVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNML 689

Query: 282 KEMKERG-----------------------------CKP-------NSVTYNALISGFCK 305
            ++ E G                             C+        +  +YN  +   C 
Sbjct: 690 HKLDESGKLSERFSYPLIKSSAEEVKTGKDPEVKSDCESGGNAKGGDQESYNKSVKELCV 749

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               + A  +LDEM  KG   +  +Y  ++ GL K  K
Sbjct: 750 GGQLKEAKAVLDEMMQKGMSVDSSTYITLMEGLIKRQK 787



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 154/315 (48%), Gaps = 8/315 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           N  EA     F  +L  Y+++   L +A   DE  ++  +++H + + P  + +  ++  
Sbjct: 301 NVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDA 360

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPD 151
             + +    AL + +EM    V+ ++   N ++      G+L+  +  L  + E+ ++PD
Sbjct: 361 CFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPD 420

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +YN LI     +R +  A+ + DEMV+  L+    T  TL+Y LC E R +EA    E
Sbjct: 421 VITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEA----E 476

Query: 212 DIMRVYNVK---PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           +++R    +   PD   + +++       +   AL + +EM + K+      Y++LI  L
Sbjct: 477 ELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGL 536

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
              G+  E    L E+ ++G  P+  TYN +I  +CKE D E AF   ++M +   K + 
Sbjct: 537 CTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDV 596

Query: 329 ISYNVILGGLCKDGK 343
           ++ N ++ GLC  GK
Sbjct: 597 VTCNTLMNGLCLHGK 611



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 37/206 (17%)

Query: 174 VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGL 233
           VF  ++  RL P   TF  L++  C +  + +AL      M+ + + PD   + +L+K  
Sbjct: 197 VFRSLIALRLHPNHYTFNLLVHTHCSKGTLADALS-TLSTMQGFGLSPDVVTYNTLLKAH 255

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           C  G L  A  +   M ++ I      Y++L+SA  + G   +   +++ M   G +P+ 
Sbjct: 256 CRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDL 315

Query: 294 VTYNALISGFCKEEDFEAAF------------------------------------TILD 317
            TYN L +G C+    + AF                                     +L+
Sbjct: 316 WTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLE 375

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
           EM DKG K++ +++N+++ GLC++G+
Sbjct: 376 EMRDKGVKSSLVTHNIVVKGLCREGQ 401



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 119/299 (39%), Gaps = 51/299 (17%)

Query: 25  FKNPNPNP-----NDTEAHPLKP--FRYNLLHYDL-IITKLGRAKMFDEMQQILHQLKHD 76
           FK   P P     ++     L P  + YN L   L  I KL  A   D++ +++ +    
Sbjct: 502 FKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEA--IDKLNELMKK---- 555

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
             +VP +  +  +I  Y +   LE+A Q  ++M     +  V   NTL+N     GKL++
Sbjct: 556 -GLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEK 614

Query: 137 MKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
             +LF+   EK    D  +YN LI        ++ A   F +M  R LQP   T+  ++ 
Sbjct: 615 AIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLS 674

Query: 196 GLCLELRVDEALKL----------------------------------KEDIMRVYNVKP 221
            L    R +EA  +                                  K D     N K 
Sbjct: 675 ALSEAGRSEEAQNMLHKLDESGKLSERFSYPLIKSSAEEVKTGKDPEVKSDCESGGNAKG 734

Query: 222 -DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            D + +   +K LC  G+L  A  V +EM++  + +D+  Y +L+  L K  ++    A
Sbjct: 735 GDQESYNKSVKELCVGGQLKEAKAVLDEMMQKGMSVDSSTYITLMEGLIKRQKRQTHAA 793



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 2/139 (1%)

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS--LALGVKEEMVRDKIEMDAGIYSS 263
           A +L     R  +V+P  Q   +++  L      S   +L V   ++  ++  +   ++ 
Sbjct: 156 AAQLLHSFRRRGHVRPSLQAANAVLSALARSPSTSPQASLDVFRSLIALRLHPNHYTFNL 215

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           L+      G   +  + L  M+  G  P+ VTYN L+   C++     A T+L  M  +G
Sbjct: 216 LVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEG 275

Query: 324 CKANPISYNVILGGLCKDG 342
                 +YN ++    + G
Sbjct: 276 IAPTRATYNTLVSAYARLG 294


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 150/297 (50%), Gaps = 6/297 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           + + Y  ++  L  +K +D+++++  ++  +   +P E+ F  +I F+ R  ++ERA+Q+
Sbjct: 246 DTVSYTTLLKGLCASKRWDDVEELFAEMM-EKNCMPNEVTFDMLIRFFCRGGMVERAIQV 304

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
             +M+           N ++N     G++D   +    M  Y  +PD  SY  ++ G   
Sbjct: 305 LQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCR 364

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R  DA ++  EMV+    P  VTF T I  LC +  +++A+ L E  M+ +       
Sbjct: 365 AERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQ-MQEHGCTVGVV 423

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +L+ G C  G +  AL +   M     + +   Y++L++ L  A R +    ++ EM
Sbjct: 424 TYNALVNGFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDAAAELVAEM 480

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             R C PN VT+N L++ FC++   + A  ++++M + GC  N I+YN +  G+ KD
Sbjct: 481 LHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKD 537



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 144/297 (48%), Gaps = 4/297 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           + + Y  ++  L RA+ +++ +++L ++  +    P E+ F   I    +  L+E+A+ +
Sbjct: 351 DTISYTTVLKGLCRAERWNDAKELLKEMVRNN-CPPNEVTFNTFICILCQKGLIEQAIML 409

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
            ++M      + V  +N L+N     G +D   ELF+ M     P+  +Y  L+ G   +
Sbjct: 410 IEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP--CKPNTITYTTLLTGLCNA 467

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            RL+ A ++  EM+ R   P +VTF  L+   C +  +DEA++L E +M  +   P+   
Sbjct: 468 ERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMME-HGCTPNLIT 526

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + +L  G+        AL +   +V   +  D   +SS+I  L K  R  E   +    +
Sbjct: 527 YNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQ 586

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + G +P ++ YN ++ G CK  + + A   L  M   GC  N  +Y +++ GL ++G
Sbjct: 587 DIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAREG 643



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 139/305 (45%), Gaps = 6/305 (1%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           P+ P  Y   +  LI     R ++ D +  +   L+   +  P  + +  ++    +   
Sbjct: 137 PVAPDAYT--YTPLIRVLCDRGRVADALSLLDDMLRRGCQ--PNVVTYTVLLEAMCKNSG 192

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
            E+A+ + DEM +      +  +N ++N     G++D  ++L   +  Y   PD  SY  
Sbjct: 193 FEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTT 252

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L+ G   S+R +D  ++F EM+++   P  VTF  LI   C    V+ A+++ +  M  +
Sbjct: 253 LLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQ-MTEH 311

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
               +  +   +I  +C  G +  A      M       D   Y++++  L +A R N+ 
Sbjct: 312 ECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDA 371

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +LKEM    C PN VT+N  I   C++   E A  ++++M + GC    ++YN ++ G
Sbjct: 372 KELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNG 431

Query: 338 LCKDG 342
            C  G
Sbjct: 432 FCVQG 436



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 143/296 (48%), Gaps = 6/296 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y +++  + +   F++   +L +++      P  + +  +I    R   ++ A  +
Sbjct: 176 NVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKG-CTPNIVTYNVIINGMCREGRVDDARDL 234

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            + + S+  Q     + TLL       + D ++ELF ++MEK   P+  ++++LI     
Sbjct: 235 LNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCR 294

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +E A +V  +M +            +I  +C + RVD+A K   + M  Y   PD  
Sbjct: 295 GGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNN-MGSYGCNPDTI 353

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +++KGLC     + A  + +EMVR+    +   +++ I  L + G   +   ++++M
Sbjct: 354 SYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQM 413

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +E GC    VTYNAL++GFC +   ++A  +   M    CK N I+Y  +L GLC 
Sbjct: 414 QEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCN 466



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 110/223 (49%), Gaps = 3/223 (1%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           +NTL+      G LD  + L   M   V+PDA +Y  LI       R+ DA  + D+M++
Sbjct: 113 YNTLVAGYCRYGHLDAARRLIGSMP--VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLR 170

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           R  QP +VT+  L+  +C     ++A+ + ++ MR     P+   +  +I G+C  G + 
Sbjct: 171 RGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDE-MRAKGCTPNIVTYNVIINGMCREGRVD 229

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  +   +     + D   Y++L+  L  + R ++   +  EM E+ C PN VT++ LI
Sbjct: 230 DARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLI 289

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             FC+    E A  +L +M +  C  N    N+++  +CK G+
Sbjct: 290 RFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGR 332



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 4/195 (2%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           +PD      LI       R  DA +V            +  + TL+ G C    +D A +
Sbjct: 72  APDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARR 131

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           L   +     V PD   +  LI+ LC  G ++ AL + ++M+R   + +   Y+ L+ A+
Sbjct: 132 LIGSM----PVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAM 187

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K     +  A+L EM+ +GC PN VTYN +I+G C+E   + A  +L+ +   GC+ + 
Sbjct: 188 CKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDT 247

Query: 329 ISYNVILGGLCKDGK 343
           +SY  +L GLC   +
Sbjct: 248 VSYTTLLKGLCASKR 262


>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
 gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
          Length = 807

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 148/297 (49%), Gaps = 8/297 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y ++I  L +A    E +++L ++      VP    + +VIG + +A  + +A  +
Sbjct: 225 NNWTYTVVINGLVKAGKVAEAERVLQEMP-----VPTLANYTSVIGGHCKAGDMGKAYHL 279

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            ++M     Q     +NTL++      ++DR  EL + M+     PD  +Y+ILI G   
Sbjct: 280 LEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCR 339

Query: 165 SRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
           ++RL +A  +   +       P +V++ TLI G     RV++A +L  + M      PD 
Sbjct: 340 AKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLE-MVTAGQHPDV 398

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             +++LI+GLC  G  S A    EEMV  KI     +YSS+IS L +AG  +    +   
Sbjct: 399 VTYSTLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDS 458

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           M   GC+PN   YN+LI G CK      A   + EM ++GC  + ++Y  ++ GLC+
Sbjct: 459 MVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCR 515



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 138/295 (46%), Gaps = 7/295 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           + ++I  L RA   DE      ++KH    +P    +  VI    +A  +  A ++  EM
Sbjct: 195 WTILIDGLFRAIRVDEACYYFEEMKHTA--IPNNWTYTVVINGLVKAGKVAEAERVLQEM 252

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRL 168
                  T+  + +++      G + +   L + M+ K    D  +YN LIHG    + +
Sbjct: 253 PV----PTLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEI 308

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A+++ +EM      P + T+  LI GLC   R+ EA  L   +    +  P+   + +
Sbjct: 309 DRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNT 368

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G      ++ A  +  EMV      D   YS+LI  L  AGR +E  + L+EM  + 
Sbjct: 369 LIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKK 428

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             P    Y+++ISG C+  + +AA T+ D M   GC+ N   YN ++ GLCK G+
Sbjct: 429 ILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGR 483



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 151/327 (46%), Gaps = 36/327 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I  L  A    E    L ++    +I+PK  ++ +VI    RA  L+ A  +
Sbjct: 397 DVVTYSTLIRGLCNAGRASEAHSYLEEMV-GKKILPKVPVYSSVISGLCRAGELDAASTV 455

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHG-CV 163
           FD M +   Q  +  +N+L+      G+L D    + ++ E+  SPD  +Y  LI G C 
Sbjct: 456 FDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCR 515

Query: 164 VSRR-------------------------------LEDAWKVFDEMVKRRLQPTLVTFGT 192
            SR                                LE A +V   ++     PT   + T
Sbjct: 516 WSRTDEACDLYVRSLEQGIEISETSCNVVIASLRCLEQAQRVLRVVLATGNSPTAFFYAT 575

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           +I  LC E  + EA +L ED++    +KPDG    +L+  +C   +  +A+   EEMVR 
Sbjct: 576 VIESLCKENNLAEARQLLEDMIGA-GIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRL 634

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEM-KERGCKPNSVTYNALISGFCKEEDFEA 311
             +   G YS+L++ALFKAG+ +E   +L+ +     C P+ + Y  LI+ +  ++  E 
Sbjct: 635 GSKPSVGTYSTLLNALFKAGKPSEAHVVLRRLISHTSCFPDELWYVGLIAAYSNQDQVEE 694

Query: 312 AFTILDEMGDKGCKANPISYNVILGGL 338
           A  +L E+  K    + ++YN +L GL
Sbjct: 695 ARNVLQELKSKWGIQSIVAYNTLLKGL 721



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 146/335 (43%), Gaps = 36/335 (10%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  ++  YD++I  L RAK   E + +L  L+++    P  + +  +I  + +A  +  A
Sbjct: 323 FVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDA 382

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNILIHG 161
            Q+F EM +      V  ++TL+      G+       L +++ K + P    Y+ +I G
Sbjct: 383 YQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISG 442

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV-DEALKLKEDIMRVYNVK 220
              +  L+ A  VFD MV    QP L  + +LIYGLC   R+ D  L++KE  M      
Sbjct: 443 LCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKE--MTERGCS 500

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD----------------------- 257
           PDG  + +LI GLC       A  +    +   IE+                        
Sbjct: 501 PDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQGIEISETSCNVVIASLRCLEQAQRVLRV 560

Query: 258 ---------AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
                    A  Y+++I +L K     E   +L++M   G KP+  T +AL+   C+++ 
Sbjct: 561 VLATGNSPTAFFYATVIESLCKENNLAEARQLLEDMIGAGIKPDGSTVDALVGAMCRQDK 620

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              A   L+EM   G K +  +Y+ +L  L K GK
Sbjct: 621 AVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGK 655



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 123/259 (47%), Gaps = 43/259 (16%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY---VSPDACSYNILIHGCVVSRRLEDAWK 173
           TV  +N      +  G+ +    LF+  EK+   + PD+ +Y ILI G     +L+ A  
Sbjct: 89  TVHTYNCFYEALIRTGQCEEAYRLFK--EKWPQELIPDSITYGILIRGLCNFGKLKLACS 146

Query: 174 VFDEMVKRRLQPTLV--------------------------------TFGTLIYGLCLEL 201
           +++EMV R L+P ++                                T+  LI GL   +
Sbjct: 147 LYEEMVDRGLRPVVLTCKFLLNALCKSGNLELALRYFEKMSSIPCAATWTILIDGLFRAI 206

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
           RVDEA    E++   +   P+   +  +I GL   G+++ A  V +EM    +      Y
Sbjct: 207 RVDEACYYFEEMK--HTAIPNNWTYTVVINGLVKAGKVAEAERVLQEMPVPTL----ANY 260

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           +S+I    KAG   +   +L++MK +G + +++TYN LI G C+ ++ + A+ +L+EM  
Sbjct: 261 TSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKS 320

Query: 322 KGCKANPISYNVILGGLCK 340
                +  +Y++++ GLC+
Sbjct: 321 NDFVPDIFTYDILIAGLCR 339



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 99/234 (42%), Gaps = 3/234 (1%)

Query: 87  CNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IME 145
           CNV+      R LE+A ++   + +     T  F+ T++        L   ++L + ++ 
Sbjct: 541 CNVV--IASLRCLEQAQRVLRVVLATGNSPTAFFYATVIESLCKENNLAEARQLLEDMIG 598

Query: 146 KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
             + PD  + + L+       +   A    +EMV+   +P++ T+ TL+  L    +  E
Sbjct: 599 AGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSE 658

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           A  +   ++   +  PD   +  LI       ++  A  V +E+           Y++L+
Sbjct: 659 AHVVLRRLISHTSCFPDELWYVGLIAAYSNQDQVEEARNVLQELKSKWGIQSIVAYNTLL 718

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             LF+         +L+EMK      N  T+N LI GFC+    + A  +L EM
Sbjct: 719 KGLFRTRNLQMVYELLREMKRNEFVVNEATFNILIQGFCRLGQTDRAVRVLSEM 772



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 7/153 (4%)

Query: 196 GLCLELRVD--EALKLKEDIMRV-YNVKPDGQV---FASLIKGLCAVGELSLALGVKEEM 249
            L LE R D  + L++ E   R+ +++K +GQ+      +I  +   GE ++        
Sbjct: 23  ALTLEERRDVRQLLQIVESSSRLGFSMKWNGQLSQRLVGVILHMVKNGESAMVF-FGWAG 81

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
            R         Y+    AL + G+  E   + KE   +   P+S+TY  LI G C     
Sbjct: 82  TRQDFRHTVHTYNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITYGILIRGLCNFGKL 141

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + A ++ +EM D+G +   ++   +L  LCK G
Sbjct: 142 KLACSLYEEMVDRGLRPVVLTCKFLLNALCKSG 174


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 156/311 (50%), Gaps = 12/311 (3%)

Query: 36  EAHPLKPFRYNLLHYDLI-ITKLGRAKM-FDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
             +P   F +N+L +    +  +G A++ FDE+ +          + P  + F  +I   
Sbjct: 136 SGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPK--------RGLRPTVVSFNTLISGC 187

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDA 152
            +A  +E   ++   M S  V   V  F+ L+N     G+LD    LF  M  K + P+ 
Sbjct: 188 CKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNG 247

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            ++ +LI G     +++ A K F  M+ + ++P LVT+  LI GLC    + EA +L  +
Sbjct: 248 VTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNE 307

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M    ++PD   F +LI G C  G++  AL +K  MV + IE+D   ++ LIS L + G
Sbjct: 308 -MSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDG 366

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           R ++   +L++M   G KP+  TY  ++  FCK+ +    F +L EM   G     ++YN
Sbjct: 367 RVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYN 426

Query: 333 VILGGLCKDGK 343
            ++ GLCK G+
Sbjct: 427 ALMNGLCKQGQ 437



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 152/306 (49%), Gaps = 5/306 (1%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRAR 97
           P +  R  ++ ++ +I+   +A   +E  + L  +    R+ P    F  +I G     R
Sbjct: 169 PKRGLRPTVVSFNTLISGCCKAGAVEEGFR-LKGVMESERVCPDVFTFSALINGLCKEGR 227

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYN 156
           L E +L +FDEM    +      F  L++ +   GK+D   + FQ+M  + V PD  +YN
Sbjct: 228 LDEGSL-LFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYN 286

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            LI+G      L++A ++ +EM    L+P  +TF TLI G C    ++ AL++K  ++  
Sbjct: 287 ALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVE- 345

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             ++ D   F  LI GLC  G +  A  +  +M+    + D   Y+ ++    K G    
Sbjct: 346 EGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXM 405

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +LKEM+  G  P  VTYNAL++G CK+   + A  +LD M + G   N I+YN++L 
Sbjct: 406 GFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILLE 465

Query: 337 GLCKDG 342
           G  K G
Sbjct: 466 GHSKHG 471



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 108/202 (53%), Gaps = 1/202 (0%)

Query: 141 FQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
            ++++    P+   +N+L+HG      +  A  VFDE+ KR L+PT+V+F TLI G C  
Sbjct: 131 LEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKA 190

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
             V+E  +LK  +M    V PD   F++LI GLC  G L     + +EM    +  +   
Sbjct: 191 GAVEEGFRLK-GVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVT 249

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
           ++ LI    K G+ +      + M  +G +P+ VTYNALI+G CK  D + A  +++EM 
Sbjct: 250 FTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMS 309

Query: 321 DKGCKANPISYNVILGGLCKDG 342
             G + + I++  ++ G CK G
Sbjct: 310 ASGLRPDRITFTTLIDGCCKYG 331



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 1/175 (0%)

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           LE +W  + E++     P    F  L++G C    V  A +L  D +    ++P    F 
Sbjct: 123 LERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSA-RLVFDEIPKRGLRPTVVSFN 181

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +LI G C  G +     +K  M  +++  D   +S+LI+ L K GR +E   +  EM  +
Sbjct: 182 TLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGK 241

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           G  PN VT+  LI G CK    + A      M  +G + + ++YN ++ GLCK G
Sbjct: 242 GLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVG 296


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 152/294 (51%), Gaps = 2/294 (0%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I+ L +   FDE  ++LH ++   R   K I +  +I +  +   +E A ++ ++M
Sbjct: 48  YGILISCLCKVGNFDEAYKLLHTMRLK-RFKRKAIAYSTIINWLCKLNRVEEARELIEKM 106

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
           + +     + +   +     T    D +  + ++  + + PDA  YN ++ G     ++E
Sbjct: 107 ARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVE 166

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           +A  +F++MVK+R+ P +VT+ TLI GLC   R++ A +L ++ M      P    + +L
Sbjct: 167 EARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKE-MAGKGYVPTEVSYNTL 225

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           I G C   +L  A  V ++MVR     +   Y++LI  L K+G+      +L  M ++G 
Sbjct: 226 IDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGV 285

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            PN  TY+ LI GFCK    + A  +L++M  +G     ++YN++L  LC+  K
Sbjct: 286 TPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADK 339



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 152/301 (50%), Gaps = 4/301 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LK F+   + Y  II  L +    +E ++++ ++       P  + +  ++    + + +
Sbjct: 73  LKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAP--PDALTYGPIVERLCKTKRI 130

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
           + AL   +EM++  ++     +N +L+      K++  + LF+ M K  ++P+  +YN L
Sbjct: 131 DDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTL 190

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G   + R+E A+++F EM  +   PT V++ TLI G C +  +  A  + + ++R  N
Sbjct: 191 INGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRS-N 249

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
             P+   + +LI GL   G++  A  V + MV+  +  +   YS LI    K  R +E  
Sbjct: 250 CVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAH 309

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +L++M  +G  P  VTYN L++  C+ +  E AF +   M  + C    ++YN +L  L
Sbjct: 310 KLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRAL 369

Query: 339 C 339
           C
Sbjct: 370 C 370



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 134/267 (50%), Gaps = 3/267 (1%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           R++P    F  V   + +A  LE+  +++  M      +    +  L++     G  D  
Sbjct: 5   RVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEA 64

Query: 138 KELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
            +L   M  K     A +Y+ +I+      R+E+A ++ ++M  R   P  +T+G ++  
Sbjct: 65  YKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMA-RYAPPDALTYGPIVER 123

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC   R+D+AL   E+ M    +KPD  ++  ++ GLC   ++  A  + E+MV+ +I  
Sbjct: 124 LCKTKRIDDALATVEE-MATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINP 182

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +   Y++LI+ L KA R      + KEM  +G  P  V+YN LI GFCK++D  AA  + 
Sbjct: 183 NVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVF 242

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
           D+M    C  N ++Y  ++ GL K GK
Sbjct: 243 DKMVRSNCVPNVVTYTTLIDGLSKSGK 269



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 147/300 (49%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-IVPKEIIFCNVIGFYGRARLLERALQ 104
           + L Y  I+ +L + K  D+    + ++   TR I P   I+  V+    +   +E A  
Sbjct: 113 DALTYGPIVERLCKTKRIDDALATVEEMA--TRGIKPDAFIYNFVLSGLCQEEKVEEARL 170

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
           +F++M    +   V  +NTL+N      +++   ELF+ M  K   P   SYN LI G  
Sbjct: 171 LFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFC 230

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
             + L  A  VFD+MV+    P +VT+ TLI GL    +V  A ++ + +++   V P+ 
Sbjct: 231 KKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVK-KGVTPNV 289

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             ++ LI G C V  +  A  + E+MV   I      Y+ L+++L +A +  +   + + 
Sbjct: 290 ATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRG 349

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M +R C P  VTYN L+   C  +  + A  +  EM  KGC  + I+Y+ +  GL + GK
Sbjct: 350 MAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGK 409



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 133/280 (47%), Gaps = 5/280 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +++ L + +  +E + +  ++    RI P  + +  +I    +A  +E A ++F EM
Sbjct: 152 YNFVLSGLCQEEKVEEARLLFEKMVKQ-RINPNVVTYNTLINGLCKAWRIETAYELFKEM 210

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
           +      T   +NTL++       L   K++F +++     P+  +Y  LI G   S ++
Sbjct: 211 AGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKV 270

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A +V D MVK+ + P + T+  LI G C   RVDEA KL E  M    + P    +  
Sbjct: 271 QAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQ-MVTQGIAPTVVTYNI 329

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+  LC   +L  A  +   M + +       Y++L+ AL    + +    +  EM  +G
Sbjct: 330 LLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKG 389

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
           C P+++TY+ L  G  +      A  ++++M  K  K NP
Sbjct: 390 CPPDAITYDTLAWGLTRAGKVHEAQELMEKM--KLTKRNP 427



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 88/180 (48%), Gaps = 3/180 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L ++       ++L  +     + P    +  +I  + + R ++ A ++
Sbjct: 253 NVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKG-VTPNVATYSCLIDGFCKVRRVDEAHKL 311

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            ++M +  +  TV  +N LLN      KL+   +LF+ M ++   P   +YN L+     
Sbjct: 312 LEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCH 371

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            ++L+ A +++ EM+ +   P  +T+ TL +GL    +V EA +L E  M++    P G+
Sbjct: 372 HKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEK-MKLTKRNPFGR 430



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 60/164 (36%), Gaps = 34/164 (20%)

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M +  V P    F ++  G    G L     V + MV     + A  Y  LIS L K G 
Sbjct: 1   MALRRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGN 60

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA---------------------- 311
            +E   +L  M+ +  K  ++ Y+ +I+  CK    E                       
Sbjct: 61  FDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPI 120

Query: 312 ------------AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
                       A   ++EM  +G K +   YN +L GLC++ K
Sbjct: 121 VERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEK 164


>gi|302771776|ref|XP_002969306.1| hypothetical protein SELMODRAFT_61378 [Selaginella moellendorffii]
 gi|300162782|gb|EFJ29394.1| hypothetical protein SELMODRAFT_61378 [Selaginella moellendorffii]
          Length = 587

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 144/294 (48%), Gaps = 13/294 (4%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L +A  F++M  ++ ++     +     IF  VI  YGRA  ++ A+     M
Sbjct: 3   YARVIVGLAKAWQFEQMWDLMEEMDKRAHLHIPAGIFSTVIKCYGRAGDVKGAVATLKRM 62

Query: 110 SS-FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168
           S  F+     + +  L+   +  G+ D    +++ M      D  +YN++  GC  S RL
Sbjct: 63  SDDFSCTPVARTYEALIRVVMDAGQCDTALSVYRAM-----ADRVTYNLVALGCCRSGRL 117

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY--NVKPDGQVF 226
           +   +++ EM  R  + + + F +L+ GLC   R DEA     D++     +   D    
Sbjct: 118 DTCVEIYQEMRSRGFRVSHLAFNSLVCGLCKAGRTDEAW----DVLGKSRPSACADAVTL 173

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
           +++I  LC+  +   AL +   M   ++  +   Y+S+I  L KAGR++    +L++M+ 
Sbjct: 174 STVIHALCS-SDCDRALELMRAMQAQRVPPNVVTYTSVIDGLCKAGRRDAAMVLLQQMQA 232

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            GC PN+VTYN LI   CK    E AF +L  M  KGC  +  + N ++ G+CK
Sbjct: 233 AGCSPNTVTYNCLIHSLCKAGKLEDAFALLRGMPSKGCTPSINNKNTLVSGICK 286



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 142/328 (43%), Gaps = 38/328 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L +A   D    +L Q++      P  + +  +I    +A  LE A  +
Sbjct: 203 NVVTYTSVIDGLCKAGRRDAAMVLLQQMQA-AGCSPNTVTYNCLIHSLCKAGKLEDAFAL 261

Query: 106 FDEMSSFNVQMTVKFFNTLLN----------PKLTCGKL------DRMKELFQIMEKYVS 149
              M S     ++   NTL++           +   GKL      + M+E + + E  ++
Sbjct: 262 LRGMPSKGCTPSINNKNTLVSGICKHAIMERQRREFGKLGQALFSEAMQESYSVEEDTLA 321

Query: 150 ----------------PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
                           PD  +Y+I+IH    + ++ +A +V+  MVKR  Q   VT+ + 
Sbjct: 322 LFYTCLEHMFGSNGDRPDKRTYSIVIHFLCKADKVLEAARVWRAMVKRLGQVDAVTYNSF 381

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           +YGL     + EA +L  +I      KP    ++ L+      G+LS    V +      
Sbjct: 382 LYGLLKLNDLSEAARLFSEID-----KPTLVSYSLLVHAYFKAGDLSKVEEVYQAATGQG 436

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           +  D  +Y+ ++  L  A ++     +  EM   G  P+  TY  LI   C++   +AA 
Sbjct: 437 LRPDLALYNIVLHGLSGAKQEAGVAHLWAEMLNNGVSPSVATYTILIHALCRDNRLQAAR 496

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKD 341
            I+D+M  +G   + I+YN +L  LCK+
Sbjct: 497 QIIDKMKGQGVLPDAITYNTLLHCLCKN 524



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 95/253 (37%), Gaps = 63/253 (24%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKR-RLQPTLVTFGTLI--YGLCLELR--VDEALK 208
           SY  +I G   + + E  W + +EM KR  L      F T+I  YG   +++  V    +
Sbjct: 2   SYARVIVGLAKAWQFEQMWDLMEEMDKRAHLHIPAGIFSTVIKCYGRAGDVKGAVATLKR 61

Query: 209 LKEDI-------------------------MRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
           + +D                          + VY    D   +  +  G C  G L   +
Sbjct: 62  MSDDFSCTPVARTYEALIRVVMDAGQCDTALSVYRAMADRVTYNLVALGCCRSGRLDTCV 121

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK------------- 290
            + +EM      +    ++SL+  L KAGR +E   +L + +   C              
Sbjct: 122 EIYQEMRSRGFRVSHLAFNSLVCGLCKAGRTDEAWDVLGKSRPSACADAVTLSTVIHALC 181

Query: 291 --------------------PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
                               PN VTY ++I G CK    +AA  +L +M   GC  N ++
Sbjct: 182 SSDCDRALELMRAMQAQRVPPNVVTYTSVIDGLCKAGRRDAAMVLLQQMQAAGCSPNTVT 241

Query: 331 YNVILGGLCKDGK 343
           YN ++  LCK GK
Sbjct: 242 YNCLIHSLCKAGK 254



 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 73/159 (45%), Gaps = 1/159 (0%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           +A   +  R +L  Y++++  L  AK    +  +  ++ ++  + P    +  +I    R
Sbjct: 430 QAATGQGLRPDLALYNIVLHGLSGAKQEAGVAHLWAEMLNNG-VSPSVATYTILIHALCR 488

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSY 155
              L+ A Q+ D+M    V      +NTLL+       LD  + L + M+++ S    ++
Sbjct: 489 DNRLQAARQIIDKMKGQGVLPDAITYNTLLHCLCKNELLDEARLLLREMKQHCSYTPATW 548

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           NI+I G +  R    A ++F ++++    P  +T+   +
Sbjct: 549 NIVIDGILEQRDPGVAQRIFSQLIRDGFFPAHLTYDAFV 587


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/278 (32%), Positives = 143/278 (51%), Gaps = 37/278 (13%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIH 160
           A ++FDE++  +++ TV  FNTL+N     G LD    L   MEK    PD  +Y+ LI+
Sbjct: 259 AQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALIN 318

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD---EALK------LKE 211
                 +++ A ++F EM +R L P  V F TLI+G     ++D   E+ +      L+ 
Sbjct: 319 ALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQP 378

Query: 212 DIMRVYN--------------------------VKPDGQVFASLIKGLCAVGELSLALGV 245
           DI+ +YN                          ++PD   + +LI G C  G++  AL +
Sbjct: 379 DIV-LYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEI 437

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
           ++EM ++ IE+D   +S+LI  + K GR  +    L+EM   G KP+ VTY  ++  FCK
Sbjct: 438 RKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCK 497

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + D +  F +L EM   G   N ++YNV+L GLCK G+
Sbjct: 498 KGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQ 535



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 150/298 (50%), Gaps = 3/298 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +  R  ++ ++ +I    +    D   ++ H ++  +R  P    +  +I    +   ++
Sbjct: 269 RSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEK-SRTRPDVFTYSALINALCKENKMD 327

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILI 159
            A ++F EM    +      F TL++     G++D MKE +Q ++ K + PD   YN L+
Sbjct: 328 GAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLV 387

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +G   +  L  A  + D M++R L+P  VT+ TLI G C    VD AL+++++ M    +
Sbjct: 388 NGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKE-MDQNGI 446

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           + D   F++LI G+C  G +  A     EM+R  ++ D   Y+ ++ A  K G       
Sbjct: 447 ELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFK 506

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           +LKEM+  G  PN VTYN L++G CK    + A  +LD M + G   + I+YN +L G
Sbjct: 507 LLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLLEG 564



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 137/301 (45%), Gaps = 6/301 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R ++  Y  +I  L +    D   ++ +++  +  ++P ++IF  +I  + R   ++   
Sbjct: 307 RPDVFTYSALINALCKENKMDGAHRLFYEMC-ERGLIPNDVIFTTLIHGHSRNGQIDLMK 365

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGC 162
           + + +M S  +Q  +  +NTL+N     G L   + +   ++ + + PD  +Y  LI G 
Sbjct: 366 ESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGF 425

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
                ++ A ++  EM +  ++   V F  LI G+C E RV +A +   +++R   +KPD
Sbjct: 426 CRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRA-GMKPD 484

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              +  ++   C  G+      + +EM  D    +   Y+ L++ L K G+      +L 
Sbjct: 485 DVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLD 544

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            M   G  P+ +TYN L+ G  +  +    +    E+   G  A+  SY  ++  L +  
Sbjct: 545 AMLNVGVVPDDITYNTLLEGHHRHANASKHYKQKPEI---GIVADLASYKSLVNELYRAS 601

Query: 343 K 343
           K
Sbjct: 602 K 602



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/100 (22%), Positives = 50/100 (50%)

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
           G   E++     ++  +++ L++   K G   +   +  E+ +R  +P  V++N LI+G+
Sbjct: 226 GFYMEILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGY 285

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           CK  + +  F +   M     + +  +Y+ ++  LCK+ K
Sbjct: 286 CKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENK 325


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 161/336 (47%), Gaps = 43/336 (12%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           + +++  L R+   ++ +++L ++K +   VP + I+  +I  Y +A+   +A +   EM
Sbjct: 45  FAILLRGLCRSNQLEKARKLLGRMK-EMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEM 103

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168
              +   TV  +  +++      +  D +K L ++ +K  SP+  +YN+++ G    R+L
Sbjct: 104 VKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKL 163

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE----------------- 211
           ++A K+ +EM  R   P +VT+ + I GLC   RVDEA K                    
Sbjct: 164 DEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVING 223

Query: 212 --------------DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
                         D M      PD   ++SLI G C  GE+  A+G+ + M++     +
Sbjct: 224 LCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPN 283

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+SL+ AL + G   +   +L EM+ RG  P+ V+YNA I G CK E  + A  + D
Sbjct: 284 MVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFD 343

Query: 318 EMGDKGCKANPISYN----------VILGGLCKDGK 343
            M ++GC  N  SY+          V+L GLCK G+
Sbjct: 344 RMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGR 379



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 129/278 (46%), Gaps = 38/278 (13%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           ++A  +F EM   + Q     F  LL       +L++ ++L   M E    PD   YN L
Sbjct: 24  DKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNAL 83

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI----- 213
           I G   ++    A+K   EMVK    PT+VT+  ++ GLC   R  +A+KL +++     
Sbjct: 84  ISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGC 143

Query: 214 ---MRVYNVK--------------------------PDGQVFASLIKGLCAVGELSLALG 244
              +  YNV                           PD   + S IKGLC    +  A  
Sbjct: 144 SPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEA-- 201

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
            ++ + R  +  D   Y+++I+ L K+G  +    +L  M  RGC P+ VTY++LI GFC
Sbjct: 202 -RKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFC 260

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           K  + E A  +LD M   GC+ N ++YN +LG L + G
Sbjct: 261 KGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLG 298



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 96/187 (51%), Gaps = 1/187 (0%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN L+       R + A  VF EM+ +  QP   TF  L+ GLC   ++++A KL    
Sbjct: 9   TYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGR- 67

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M+     PD  ++ +LI G     +   A     EMV++        Y++++  L KA R
Sbjct: 68  MKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAER 127

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             +   +L EM+++GC PN  TYN ++ G C+E   + A  +L+EM  +G   + ++YN 
Sbjct: 128 TRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNS 187

Query: 334 ILGGLCK 340
            + GLCK
Sbjct: 188 FIKGLCK 194



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 140/308 (45%), Gaps = 13/308 (4%)

Query: 42  PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLER 101
           P   +++ Y  +I  L ++   D   ++L  +  +    P  + + ++I  + +   +ER
Sbjct: 209 PVTPDVVSYTTVINGLCKSGDLDSASRMLDHMS-NRGCTPDVVTYSSLIDGFCKGGEVER 267

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIH 160
           A+ + D M     +  +  +N+LL      G + + +++   ME+   +PD  SYN  I 
Sbjct: 268 AMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACID 327

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY----------GLCLELRVDEALKLK 210
           G   + R++ A  VFD MV+R   P   ++  LI           GLC   R DEA  L 
Sbjct: 328 GLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALF 387

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
             ++     +PD   +  ++   C   ++  AL + ++M+ +K   +   ++ L+  L  
Sbjct: 388 SKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQML-EKNCCNVVTWNILVHGLCV 446

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
             R ++   +L  M + G  P+ VTY  L+   CK     AA  + +E    GC  + ++
Sbjct: 447 DDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVT 506

Query: 331 YNVILGGL 338
           Y+ ++ GL
Sbjct: 507 YSALITGL 514



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 83/160 (51%), Gaps = 1/160 (0%)

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
           +  + T+  L+  L  E R D+A  + ++++   + +PD   FA L++GLC   +L  A 
Sbjct: 4   EHNVFTYNKLLLQLTREHRHDKASAVFQEMID-KSCQPDAFTFAILLRGLCRSNQLEKAR 62

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            +   M       D  IY++LIS   KA    +    L EM +  C P  VTY  ++ G 
Sbjct: 63  KLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGL 122

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           CK E    A  +LDEM DKGC  N  +YNVI+ GLC++ K
Sbjct: 123 CKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERK 162



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 123/268 (45%), Gaps = 15/268 (5%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R N++ Y+ ++  L R     + + +L +++      P  + +   I    +A  +++A 
Sbjct: 281 RPNMVAYNSLLGALHRLGHIGKAEDMLVEMER-RGFTPDVVSYNACIDGLCKAERVKKAK 339

Query: 104 QMFDEM---------SSFNVQMT-VKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPD 151
            +FD M         SS+++ +  +  +  LL+     G+ D    LF   + EK   PD
Sbjct: 340 AVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPD 399

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
              YN+++      R+++ A ++  +M+++     +VT+  L++GLC++ R+ +A  +  
Sbjct: 400 VFFYNVMLDSHCKRRQIDKALQIHKQMLEKNC-CNVVTWNILVHGLCVDDRLSDAETMLL 458

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
             M      PD   + +L+  +C  G+ + AL + EE V+     D   YS+LI+ L   
Sbjct: 459 -TMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHE 517

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNAL 299
               E   +  ++ ER   P+  T   L
Sbjct: 518 NMAEEAYLLFTKLVERRWVPDDKTLGLL 545



 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 30/56 (53%)

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G + N  TYN L+    +E   + A  +  EM DK C+ +  ++ ++L GLC+  +
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQ 57


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 134/269 (49%), Gaps = 2/269 (0%)

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           D  + P    +  ++  Y R      A  + D+M    ++ TV  +NTLL      G  D
Sbjct: 361 DWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFD 420

Query: 136 RMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
              +++ +M K  V+PD   Y+ L+ G       E A  ++ +++ R    + +TF T+I
Sbjct: 421 DALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMI 480

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
            GLC   ++ EA ++  D M+     PDG  + +LI G C    +  A  VK  M R+ I
Sbjct: 481 SGLCKMGKMVEAEEIF-DKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPI 539

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
                +Y+SLIS LFK+ R  E   +L EM  RG  PN VTY ALI G+CKE   + AF+
Sbjct: 540 SPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFS 599

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
              EM + G  AN I  + ++ GL + G+
Sbjct: 600 SYFEMTENGLSANIIICSTMVSGLYRLGR 628



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 172/388 (44%), Gaps = 63/388 (16%)

Query: 9   ACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQ 68
           A L  L+ +P  +L  F+  +   N         FR N+  Y  ++  L R +M+DE + 
Sbjct: 39  AVLRNLRLNPTASLGFFQFVSKQQN---------FRPNVKSYCKLVHILSRGRMYDETRA 89

Query: 69  ILHQL------KHDTRIVPKEII------------FCNVIGFYGRARLLERALQMFDEMS 110
            L+QL      K    ++  E++            F  ++  Y    L + AL +FD M 
Sbjct: 90  YLNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMG 149

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----------------------- 147
                 +++  N+LLN  +  G+      ++Q M +                        
Sbjct: 150 KCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVD 209

Query: 148 -------------VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
                        V P+  +Y+ LI+G V    +E A  V   M ++ +   +VT+  LI
Sbjct: 210 EAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLI 269

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
            G C + ++DEA K+   +     + PD + +  LI G C  G++  A+ + +EM+R  +
Sbjct: 270 KGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGL 329

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           + +  I +SLI+   K G  +E   ++  M +   KP+S +YN L+ G+C+E     AF 
Sbjct: 330 KTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFN 389

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDG 342
           + D+M  +G +   ++YN +L GLC+ G
Sbjct: 390 LCDKMLQEGIEPTVLTYNTLLKGLCRVG 417



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 136/264 (51%), Gaps = 3/264 (1%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           IVP   +   ++  + +   ++ A     +M +  V+  +  +++L+N  ++ G ++  K
Sbjct: 188 IVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAK 247

Query: 139 ELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYG 196
            + + M EK VS +  +Y +LI G     ++++A KV   M +   L P    +G LI G
Sbjct: 248 GVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDG 307

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
            C   ++D+A++L ++++R+  +K +  +  SLI G C  GE+  A GV   MV   ++ 
Sbjct: 308 YCRTGKIDDAVRLLDEMLRL-GLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKP 366

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           D+  Y++L+    + G  +E   +  +M + G +P  +TYN L+ G C+   F+ A  I 
Sbjct: 367 DSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIW 426

Query: 317 DEMGDKGCKANPISYNVILGGLCK 340
             M  +G   + + Y+ +L GL K
Sbjct: 427 HLMMKRGVAPDEVGYSTLLDGLFK 450



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 141/302 (46%), Gaps = 14/302 (4%)

Query: 47  LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMF 106
           +L Y+ ++  L R   FD+  QI H L     + P E+ +  ++    +    E A  ++
Sbjct: 403 VLTYNTLLKGLCRVGAFDDALQIWH-LMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLW 461

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVS 165
            ++ +     +   FNT+++     GK+   +E+F  M+    SPD  +Y  LI G   +
Sbjct: 462 KDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKA 521

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             +  A+KV   M +  + P++  + +LI GL    R+ E   L  + M +  + P+   
Sbjct: 522 SNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTE-MGIRGLTPNIVT 580

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + +LI G C  G L  A     EM  + +  +  I S+++S L++ GR +E   ++++M 
Sbjct: 581 YGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMV 640

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA----NPISYNVILGGLCKD 341
           + G  P+          F K +   AA   + +  D+ CK     N I YN+ + GLCK 
Sbjct: 641 DHGFFPDH-------ECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKT 693

Query: 342 GK 343
           GK
Sbjct: 694 GK 695



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 145/334 (43%), Gaps = 33/334 (9%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + F  + + ++ +I+ L +     E ++I  ++K D    P  I +  +I  Y +A  + 
Sbjct: 467 RGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMK-DLGCSPDGITYRTLIDGYCKASNVG 525

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
           +A ++   M    +  +++ +N+L++      +L  + +L   M  + ++P+  +Y  LI
Sbjct: 526 QAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALI 585

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA------------- 206
            G      L+ A+  + EM +  L   ++   T++ GL    R+DEA             
Sbjct: 586 DGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFF 645

Query: 207 ----LKLKEDIMRVYNVK--------------PDGQVFASLIKGLCAVGELSLALGVKEE 248
                 LK DI      K              P+  V+   I GLC  G++  A      
Sbjct: 646 PDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSM 705

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           +       D   Y +LI     AG  +E   +  EM  RG  PN VTYNALI+G CK E+
Sbjct: 706 LSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSEN 765

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            + A  +  ++  KG   N ++YN ++ G CK G
Sbjct: 766 VDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIG 799



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 140/289 (48%), Gaps = 9/289 (3%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           E  P+ P   ++  Y+ +I+ L +++   E+  +L ++     + P  + +  +I  + +
Sbjct: 535 EREPISP---SIEMYNSLISGLFKSRRLVEVTDLLTEMGIRG-LTPNIVTYGALIDGWCK 590

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACS 154
             +L++A   + EM+   +   +   +T+++     G++D    L Q M  +   PD   
Sbjct: 591 EGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPD--- 647

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           +   +   +    ++      DE  K  L P  + +   I GLC   +VD+A +    ++
Sbjct: 648 HECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFS-ML 706

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
            +    PD   + +LI G  A G +  A  +++EM+R  +  +   Y++LI+ L K+   
Sbjct: 707 SLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENV 766

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +    +  ++ ++G  PN VTYN LI G+CK  + +AAF + D+M ++G
Sbjct: 767 DRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEG 815



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 118/248 (47%), Gaps = 39/248 (15%)

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKYVS--PDACSYNILIHGCVVSR-RLEDAWK----- 173
           N  LNP  + G        FQ + K  +  P+  SY  L+H  ++SR R+ D  +     
Sbjct: 43  NLRLNPTASLG-------FFQFVSKQQNFRPNVKSYCKLVH--ILSRGRMYDETRAYLNQ 93

Query: 174 -------------VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                        ++DE+V    +     F   ++ + L++ V++ L  K  +    N+ 
Sbjct: 94  LVDLCKFKDRGNVIWDELVGVYRE---FAFSPTVFDMILKVYVEKGLT-KNALYVFDNMG 149

Query: 221 PDGQVFA-----SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
             G++ +     SL+  L   GE   A  V ++M+R  I  D  + S +++A  K G+ +
Sbjct: 150 KCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVD 209

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E    +K+M+  G +PN VTY++LI+G+    D EAA  +L  M +KG   N ++Y +++
Sbjct: 210 EAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLI 269

Query: 336 GGLCKDGK 343
            G CK  K
Sbjct: 270 KGYCKQCK 277



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 2/143 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y++ I  L +    D+ ++    L      VP    +C +I  Y  A  ++ A ++
Sbjct: 679 NNIVYNIAIAGLCKTGKVDDARRFFSMLSLKG-FVPDNFTYCTLIHGYSAAGNVDEAFRL 737

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            DEM    +   +  +N L+N       +DR + LF ++ +K + P+  +YN LI G   
Sbjct: 738 RDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCK 797

Query: 165 SRRLEDAWKVFDEMVKRRLQPTL 187
              ++ A+K+ D+M++  + P++
Sbjct: 798 IGNMDAAFKLKDKMIEEGISPSI 820


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 145/297 (48%), Gaps = 6/297 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA-RLLERALQMFDE 108
           +DL++    R  + D+   I+H L      +P  + +  V+    R+ R +  A  +F E
Sbjct: 137 FDLVVKSYSRLCLIDKALSIVH-LSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKE 195

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRR 167
           M    V   V  +N L+      G LD     F  MEK    P+  +YN LI G    R+
Sbjct: 196 MLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRK 255

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE-ALKLKEDIMRVYNVKPDGQVF 226
           ++D +++   M  + L+P L+++  +I GLC E R+ E +  L E   R Y++  D   +
Sbjct: 256 IDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSL--DEVTY 313

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
            +LIKG C  G    AL +  EM+R  +      Y+SLI ++ KAG  N     L +M+ 
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRV 373

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           RG  PN  TY  L+ GF ++     A+ +L EM D G   + ++YN ++ G C  GK
Sbjct: 374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGK 430



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 153/306 (50%), Gaps = 3/306 (0%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
            LK    NL+ Y+++I  L R     E+  +L ++      +  E+ +  +I  Y +   
Sbjct: 267 ALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSL-DEVTYNTLIKGYCKEGN 325

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
             +AL M  EM    +  +V  + +L++     G ++R  E   Q+  + + P+  +Y  
Sbjct: 326 FHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTT 385

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L+ G      + +A++V  EM+     P++VT+  LI G C+  ++ +A+ + ED M+  
Sbjct: 386 LVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLED-MKEK 444

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + PD   +++++ G C   ++  AL VK +MV   I+ D   YSSLI    +  R  E 
Sbjct: 445 GLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEA 504

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +  EM   G  P+  TY ALI+ +C E D + A  + +EM +KG   + ++Y+V++ G
Sbjct: 505 CDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLING 564

Query: 338 LCKDGK 343
           L K  +
Sbjct: 565 LNKQAR 570



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 159/349 (45%), Gaps = 54/349 (15%)

Query: 35  TEAHPLKPFRYNLLHYDLIITKLGRAK--------MFDEMQQILHQLKHDTRIVPKEIIF 86
           ++AH   P    +L Y+ ++    R+K        +F EM Q        +++ P    +
Sbjct: 160 SQAHGFMP---GVLSYNAVLDATIRSKRNISFAENVFKEMLQ--------SQVSPNVFTY 208

Query: 87  CNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME- 145
             +I  +  A  L+ AL+ FD M        V  +NTL++      K+D   EL + M  
Sbjct: 209 NILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMAL 268

Query: 146 KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
           K + P+  SYN++I+G     R+++   V  EM KR      VT+ TLI G C E    +
Sbjct: 269 KGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQ 328

Query: 206 ALKLKE----------------------------------DIMRVYNVKPDGQVFASLIK 231
           AL +                                    D MRV  + P+ + + +L+ 
Sbjct: 329 ALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVD 388

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           G    G ++ A  V +EM+ +        Y++LI+    AG+  +  A+L++MKE+G  P
Sbjct: 389 GFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTP 448

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + V+Y+ ++SGFC+  D + A  +  +M  KG K + I+Y+ ++ G C+
Sbjct: 449 DVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCE 497



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 154/357 (43%), Gaps = 56/357 (15%)

Query: 38  HPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           H L P   +++ Y  +I  + +A   +   + L Q++    + P E  +  ++  + +  
Sbjct: 339 HGLSP---SVITYTSLIHSMCKAGNMNRATEFLDQMRVRG-LCPNERTYTTLVDGFSQKG 394

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYN 156
            +  A ++  EM       +V  +N L+N     GK+ D +  L  + EK ++PD  SY+
Sbjct: 395 YMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYS 454

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            ++ G   S  +++A +V  +MV + ++P  +T+ +LI G C + R  EA  L ++++RV
Sbjct: 455 TVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRV 514

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             + PD   + +LI   C  G+L  A+ +  EMV   +  D   YS LI+ L K  R  E
Sbjct: 515 -GLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTRE 573

Query: 277 -------------FPA-------------------------------------ILKEMKE 286
                         P+                                     + + M E
Sbjct: 574 AKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLE 633

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  KP+   YN +I G C+  D   A+++  EM   G   + ++   ++  L K+GK
Sbjct: 634 KNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGK 690



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 133/295 (45%), Gaps = 20/295 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +++   R+   DE  ++  ++     I P  I + ++I  +   R  + A  +
Sbjct: 449 DVVSYSTVLSGFCRSYDVDEALRVKRKMVAKG-IKPDTITYSSLIQGFCEQRRTKEACDL 507

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           FDEM    +      +  L+N     G L +  +L  +++EK V PD  +Y++LI+G   
Sbjct: 508 FDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNK 567

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY---------------GLCLELRVDEALKL 209
             R  +A ++  ++      P+ VT+ TLI                G C++  + EA ++
Sbjct: 568 QARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQV 627

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            E ++   N KPDG  +  +I G C  G++  A  + +EMV+    +      +L+  L 
Sbjct: 628 FESMLE-KNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLH 686

Query: 270 KAGRKNEFPAILKEMKERGCK-PNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           K G+ NE  +++  +  R C+   +     L+    +E + +    +L EM   G
Sbjct: 687 KEGKVNELNSVIANVL-RSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDG 740


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 177/379 (46%), Gaps = 58/379 (15%)

Query: 13  RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ 72
           RL K P  ALQ F             P   F +N   Y L++  LGRA+  +  +  L  
Sbjct: 94  RLIKTPSKALQFFN----------WAPELGFTHNDQSYFLMLEILGRARNLNVARNFLFS 143

Query: 73  LKHDTRIVPK--EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130
           +K  +    K  +  F ++I  YG+A L + ++Q+F+ M S  V  +V  FN+LL   L 
Sbjct: 144 IKRRSNGTVKLEDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLK 203

Query: 131 CGKLDRMKELF-QIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
            G+ +  + +F +++  Y V+PD  ++NILI G   +  +++ ++ F EM + +  P LV
Sbjct: 204 RGRTNMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLV 263

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIM-RVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           T+ TL+ GLC   +V+ A  +   ++ +  N+ PD   + +L++G C   E+  AL V E
Sbjct: 264 TYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFE 323

Query: 248 EMVRDKIEMDAGIYSSLISALFK------------------------------------A 271
           EMV   ++ +   Y++LI  L +                                    A
Sbjct: 324 EMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNA 383

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK-------GC 324
           G  N+   + ++M     +P+S TY+ LI   C+  +FE A  + DE+ +K       GC
Sbjct: 384 GNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDGC 443

Query: 325 KANPISYNVILGGLCKDGK 343
                +Y  +   LC++GK
Sbjct: 444 TPLVAAYKSMFEFLCRNGK 462



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 141/301 (46%), Gaps = 14/301 (4%)

Query: 52  LIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111
           LI+ K GR  M    Q +  ++     + P    F  +I  + +  +++   + F EMS 
Sbjct: 199 LILLKRGRTNM---AQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSR 255

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK---YVSPDACSYNILIHGCVVSRRL 168
           F     +  +NTL++     GK++    +   M K    ++PD  +Y  L+ G  +   +
Sbjct: 256 FKCDPDLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEI 315

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           ++A  VF+EMV + L+P  +T+ TLI GLC   ++D+  ++ E  +      PD     +
Sbjct: 316 DEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNT 375

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER- 287
           L+   C  G L+ AL V E+M+   +  D+  YS LI  L + G       +  E+ E+ 
Sbjct: 376 LMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKE 435

Query: 288 ------GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
                 GC P    Y ++    C+      A  +  ++  +G + +P+S+ +++ G C++
Sbjct: 436 ILLRDDGCTPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRGTQ-DPLSFKILIKGHCRE 494

Query: 342 G 342
           G
Sbjct: 495 G 495



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 124/299 (41%), Gaps = 43/299 (14%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +L+ Y+ ++  L RA   +    +++ + K  T + P  + +  ++  Y     ++ AL 
Sbjct: 261 DLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALV 320

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDACSYNILIHGC 162
           +F+EM S  ++     +NTL+       K+D++K++F+  +      PD C+ N L++  
Sbjct: 321 VFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAH 380

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL------KEDIMRV 216
             +  L DA +VF++M+   ++P   T+  LI  LC     + A +L      KE ++R 
Sbjct: 381 CNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRD 440

Query: 217 YNVKP----------------------------------DGQVFASLIKGLCAVGELSLA 242
               P                                  D   F  LIKG C  G     
Sbjct: 441 DGCTPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRGTQDPLSFKILIKGHCREGTFEAG 500

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
             +   M+R     D   Y SLI  L + G        L++M +    P + T++++++
Sbjct: 501 YELLVLMLRRDFVPDLETYQSLIDGLLQKGEPLVAYQTLEKMIKSSHVPETSTFHSILA 559



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 116/261 (44%), Gaps = 13/261 (4%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP   N + Y+ +I  L   +  D+++QI          +P       ++  +  A  L
Sbjct: 330 LKP---NEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNL 386

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYV-------SPD 151
             AL++F++M   NV+     ++ L+      G  +R ++LF ++ EK +       +P 
Sbjct: 387 NDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDGCTPL 446

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +Y  +      + +   A +VF +++KR  Q  L +F  LI G C E   +   +L  
Sbjct: 447 VAAYKSMFEFLCRNGKTAKAERVFRQLMKRGTQDPL-SFKILIKGHCREGTFEAGYELLV 505

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            ++R  +  PD + + SLI GL   GE  +A    E+M++     +   + S+++ L   
Sbjct: 506 LMLR-RDFVPDLETYQSLIDGLLQKGEPLVAYQTLEKMIKSSHVPETSTFHSILARLLAK 564

Query: 272 GRKNEFPAILKEMKERGCKPN 292
           G  +E    +  M E   + N
Sbjct: 565 GCAHESARFIMLMLEGKIRQN 585


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 139/294 (47%), Gaps = 5/294 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I  L +    D    +  ++       P    +  ++    +   L+ A  +
Sbjct: 95  DVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAV 154

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             E    +    V  +NTL+      G++D     F Q+ E+   P   S+N +I G   
Sbjct: 155 ITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCR 214

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +RRL DA +VF+EM+ R   P LVT+  +I GLC   ++DEA +L  D M     +PD  
Sbjct: 215 ARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLL-DRMVSEGCRPDLV 273

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  L+ G  A G L  ALG+   MV      D   Y+ +I  L K GR ++   I +E+
Sbjct: 274 AYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFREL 333

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
               C PN VTY+ALI G+C+    +    ++ EM    C+ N ++YN ++ GL
Sbjct: 334 VANKCSPNVVTYSALIGGYCRASRVDEGGKVMREM---ACRPNVVTYNTMIWGL 384



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 34/335 (10%)

Query: 21  ALQLFK-NPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK----- 74
           ALQLF+ NP   P  +            + Y+++I     A   D    +L ++      
Sbjct: 10  ALQLFRENPCQLPASS------------VTYNVLIRGFCNASDLDAAFSLLREMDVEGMQ 57

Query: 75  ---HDTRIVPKEIIFCNVIGFYGRARLLERALQMFD-EMSSFNVQMTVKFFNTLLNPKLT 130
                T I+ + +  C      GR   + +AL+ FD  +   + Q  V  + TL+N    
Sbjct: 58  CNDRTTSIILQGLCRC------GR---VAQALEHFDASLELAHAQPDVVSYTTLINGLCK 108

Query: 131 CGKLDRMKELFQIMEKY--VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
            G++D   +LF+ M       P+A +YN L+ G     RL+ A  V  E  KR   P +V
Sbjct: 109 LGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVV 168

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           T+ TL+  L    RVDEAL     +     V P    F ++I GLC    L+ AL V  E
Sbjct: 169 TYNTLMAALFQLGRVDEALATFTQMTEEGYV-PTLVSFNAIITGLCRARRLADALEVFNE 227

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M+      +   YS +I  L K+ + +E   +L  M   GC+P+ V Y  L+ GF     
Sbjct: 228 MIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGR 287

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ++A  +L  M  +GC  + ++Y V++  LCK G+
Sbjct: 288 LDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGR 322



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 123/250 (49%), Gaps = 7/250 (2%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC- 153
           RA    +ALQ+F E +   +  +   +N L+        LD    L + M+  V    C 
Sbjct: 3   RAGSHNQALQLFRE-NPCQLPASSVTYNVLIRGFCNASDLDAAFSLLREMD--VEGMQCN 59

Query: 154 --SYNILIHGCVVSRRLEDAWKVFDEMVK-RRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
             + +I++ G     R+  A + FD  ++    QP +V++ TLI GLC   RVD A  L 
Sbjct: 60  DRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLF 119

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
             ++     +P+   + +L+ GLC    L  A  V  E  +     D   Y++L++ALF+
Sbjct: 120 RKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQ 179

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            GR +E  A   +M E G  P  V++NA+I+G C+      A  + +EM D+    N ++
Sbjct: 180 LGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVT 239

Query: 331 YNVILGGLCK 340
           Y+V++ GLCK
Sbjct: 240 YSVVIDGLCK 249



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 112/224 (50%), Gaps = 2/224 (0%)

Query: 121 FNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +N L++      +LD  + +  +  ++  +PD  +YN L+       R+++A   F +M 
Sbjct: 135 YNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMT 194

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           +    PTLV+F  +I GLC   R+ +AL++  +++   +  P+   ++ +I GLC   +L
Sbjct: 195 EEGYVPTLVSFNAIITGLCRARRLADALEVFNEMID-RDFHPNLVTYSVVIDGLCKSDQL 253

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A  + + MV +    D   Y+ L+     AGR +    +L+ M  +GC P+ VTY  +
Sbjct: 254 DEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVV 313

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I   CK    + A  I  E+    C  N ++Y+ ++GG C+  +
Sbjct: 314 IDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASR 357



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 125/269 (46%), Gaps = 13/269 (4%)

Query: 35  TEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYG 94
           TEA   + F  +++ Y+ ++  L +    DE      Q+  +   VP  + F  +I    
Sbjct: 156 TEARK-RDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEG-YVPTLVSFNAIITGLC 213

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----P 150
           RAR L  AL++F+EM   +    +  ++ +++      K D++ E  Q++++ VS    P
Sbjct: 214 RARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLC---KSDQLDEAQQLLDRMVSEGCRP 270

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           D  +Y  L+ G   + RL+ A  +   MV +   P +VT+  +I  LC   RVD+A ++ 
Sbjct: 271 DLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIF 330

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
            +++      P+   +++LI G C    +     V  EM       +   Y+++I  L  
Sbjct: 331 RELV-ANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMA---CRPNVVTYNTMIWGLSM 386

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             R  E   + +EM E G  P++ TY  L
Sbjct: 387 VDRNEEAYGMFREMSECGFVPDARTYRGL 415



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 96/194 (49%), Gaps = 6/194 (3%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + F  NL+ Y ++I  L ++   DE QQ+L ++  +    P  + +  ++  +  A  L+
Sbjct: 231 RDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEG-CRPDLVAYTPLVLGFSAAGRLD 289

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
            AL +   M S      V  +  +++     G++D   E+F +++    SP+  +Y+ LI
Sbjct: 290 SALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALI 349

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G   + R+++  KV  EM  R   P +VT+ T+I+GL +  R +EA  +  ++     V
Sbjct: 350 GGYCRASRVDEGGKVMREMACR---PNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFV 406

Query: 220 KPDGQVFASLIKGL 233
            PD + +  L + L
Sbjct: 407 -PDARTYRGLKRAL 419



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 5/78 (6%)

Query: 268 LFKAGRKNEFPAILKEMKERGCK--PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
           + +AG  N+    L+  +E  C+   +SVTYN LI GFC   D +AAF++L EM  +G +
Sbjct: 1   MVRAGSHNQ---ALQLFRENPCQLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQ 57

Query: 326 ANPISYNVILGGLCKDGK 343
            N  + ++IL GLC+ G+
Sbjct: 58  CNDRTTSIILQGLCRCGR 75


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 151/297 (50%), Gaps = 9/297 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI---IFCNVIGFYGRARLLERALQMF 106
           + ++I  L +A M  +     H L  +T      I    +  ++ +  + + ++ A+ + 
Sbjct: 227 FSILINGLVKAGMMIQA----HSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALM 282

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVS 165
           +++++     T+  +N LLN     G+L+   +L  +I++   +PD  +Y  LI G    
Sbjct: 283 EKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKE 342

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
           +R  +A+K+F EM  R L    V +  LI GL    ++ +A  + +  M  +   PD   
Sbjct: 343 KRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYK-TMTSHGCVPDVVT 401

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
            +++I GL   G +  A+ + + M    +  +  +YS+LI  L KA + +    +L +MK
Sbjct: 402 LSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMK 461

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +  C P+++TYN LI G CK  D EAA    DEM + GCK +  +YN+++ GLCK G
Sbjct: 462 KAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAG 518



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 141/328 (42%), Gaps = 41/328 (12%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ ++  L +    +E   +L ++  D    P  + + ++I   G+ +    A ++F EM
Sbjct: 297 YNALLNGLCKMGRLEEAIDLLRKIV-DNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEM 355

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
           +S  + +    +  L+   L  GK+ +   +++ M  +   PD  + + +I G   + R+
Sbjct: 356 ASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRI 415

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
             A ++F  M  R L P  V +  LI+GLC   ++D AL++   + + +   PD   +  
Sbjct: 416 GAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF-CTPDTITYNI 474

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI GLC  G++  A    +EM+    + D   Y+ LIS L KAG  +    +L +M    
Sbjct: 475 LIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSS-- 532

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG--------------CKAN------- 327
              +   Y++L+ G CK    E    +  EM   G              CKAN       
Sbjct: 533 ---SRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQTRTRLIFHLCKANRVDEAVS 589

Query: 328 ------------PISYNVILGGLCKDGK 343
                       P +YN I+  L K GK
Sbjct: 590 LFNAIRKEGMPHPYAYNSIISALIKSGK 617



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 127/249 (51%), Gaps = 12/249 (4%)

Query: 102 ALQMFDEMSS--FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSY 155
           A ++F  +SS  F  Q +V   N LL+      +  R +E   +++  ++    PD  ++
Sbjct: 101 AWELFQCLSSPRFGFQHSVHTGNALLD---VFARTKRHREAGNLLKNELATIFRPDVETW 157

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           N+LI G  ++R  E+A+ V  EM +   + P+L T   +++GLC   +V  A+   E + 
Sbjct: 158 NVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVR 217

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           R   V      F+ LI GL   G +  A  + +E   +   +D   Y+++++ L K  + 
Sbjct: 218 RSMPVS--AATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKI 275

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            E  A+++++   GC P   TYNAL++G CK    E A  +L ++ D GC  + ++Y  +
Sbjct: 276 QEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSL 335

Query: 335 LGGLCKDGK 343
           + GL K+ +
Sbjct: 336 IDGLGKEKR 344



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 124/278 (44%), Gaps = 41/278 (14%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           VP  +    +I    +A  +  A+++F  M +  +      ++ L++      K+D   E
Sbjct: 396 VPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALE 455

Query: 140 LFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           +   M+K + +PD  +YNILI G   S  +E A   FDEM++   +P + T+  LI GLC
Sbjct: 456 MLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLC 515

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI---- 254
                D A  + +D+           V++SL+ GLC  G+L     +  EM R  +    
Sbjct: 516 KAGNTDAACGVLDDM------SSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQ 569

Query: 255 -------------EMDAGI----------------YSSLISALFKAGRKNEFPAILKEMK 285
                         +D  +                Y+S+ISAL K+G+ NE  A+ +EM 
Sbjct: 570 TRTRLIFHLCKANRVDEAVSLFNAIRKEGMPHPYAYNSIISALIKSGKVNEGQAVYQEMT 629

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
            R  KP+ VTYNAL++G       + A     EM  +G
Sbjct: 630 -RWWKPDRVTYNALLNGMIGANRMDRAHYYYLEMTGRG 666



 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 38/65 (58%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           +N++++  +  GK++  + ++Q M ++  PD  +YN L++G + + R++ A   + EM  
Sbjct: 605 YNSIISALIKSGKVNEGQAVYQEMTRWWKPDRVTYNALLNGMIGANRMDRAHYYYLEMTG 664

Query: 181 RRLQP 185
           R   P
Sbjct: 665 RGYVP 669


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/246 (33%), Positives = 131/246 (53%), Gaps = 2/246 (0%)

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDA 152
           G+  ++  A  ++ ++ S  V+ ++  FNT++N     GK+     +F +I +  + PDA
Sbjct: 173 GKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDA 232

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +Y  LI G   +R+L+ A++VFD MVK    P  VT+ TLI GLC E R+ EA+ + E+
Sbjct: 233 FTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEE 292

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M    ++P    +   I  LC +G +  A+ +   M +         Y+++IS LF+AG
Sbjct: 293 -MTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAG 351

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           +      +  +M + G  PN+VTYNALI+  C E  F  A  I D M   G  AN  +YN
Sbjct: 352 KMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYN 411

Query: 333 VILGGL 338
            I+ GL
Sbjct: 412 QIIKGL 417



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 137/289 (47%), Gaps = 8/289 (2%)

Query: 52  LIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111
           LI+  L R  + +   + L+ +K ++   P E  +C +I  + +   L+ A   F EM  
Sbjct: 448 LIVENLKRGYL-NNATRFLYMMK-ESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLK 505

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLED 170
             +      +  +++     GK+D    LF+ ME+   S    +YN +I G     R  +
Sbjct: 506 CGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSE 565

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           A K   +M ++ LQP  +T+ +LI GLC     + A K+  + M   N  P+   + SLI
Sbjct: 566 AEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHE-MEKKNCLPNAHTYTSLI 624

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
            GLC  G++  A    E +  +  E     YS+L+S L + GR NE   +++ MKE+G  
Sbjct: 625 YGLCQEGKVDAA----ERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLS 680

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           P+   Y +L+   CK    + A  I + M  KG + +   Y V++  LC
Sbjct: 681 PSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALC 729



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 135/299 (45%), Gaps = 37/299 (12%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    +  +I    RA  +E A+ M+ +M    +      +N L+N   T G+     ++
Sbjct: 335 PSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKI 394

Query: 141 FQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY---- 195
           F  ME + +  +A +YN +I G      +E A  VF++M+K    PT+VT+ TLI     
Sbjct: 395 FDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLK 454

Query: 196 -------------------------------GLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
                                          G C   ++D A     ++++   + P+  
Sbjct: 455 RGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKC-GISPNQW 513

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + ++I G C  G++ +AL + E M  +        Y+++IS L K  R +E      +M
Sbjct: 514 TYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKM 573

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            E+G +PN++TY +LI+G CK      AF I  EM  K C  N  +Y  ++ GLC++GK
Sbjct: 574 TEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGK 632



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 147/294 (50%), Gaps = 3/294 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F + L  ++ ++ +LG+  M    Q +  Q+   + + P  + F  +I    +   ++ A
Sbjct: 158 FGFTLYSFNTLLLQLGKFDMVTSAQNVYAQI-FSSGVKPSLLTFNTMINILCKKGKVQEA 216

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHG 161
           + +F+++  F++      + +L+       KLD+  E+F  M K   +P++ +Y+ LI+G
Sbjct: 217 VLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLING 276

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                R+ +A  + +EM ++ ++PT+ T+   I  LC   RVD+A+ L    M      P
Sbjct: 277 LCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRS-MGKKGCSP 335

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
             Q + ++I GL   G++ LA+G+  +M+++ +  +   Y++LI+ L   GR      I 
Sbjct: 336 SVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIF 395

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
             M+  G   N+ TYN +I G    +D E A  + ++M   G     ++YN ++
Sbjct: 396 DWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLI 449



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 140/283 (49%), Gaps = 11/283 (3%)

Query: 68  QILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQM---TVKFFNTL 124
            +L++L  D  + P + +   +I        L+R       +SS +  +   T+  FNTL
Sbjct: 109 SMLNRLVKDKILAPADHVRILMIKACRNEDELKRVTDFLHGISSSDSGLFGFTLYSFNTL 168

Query: 125 LNPKLTCGKLDRMKE----LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           L   L  GK D +        QI    V P   ++N +I+      ++++A  VF+++ +
Sbjct: 169 L---LQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQ 225

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
             L P   T+ +LI G C   ++D+A ++ + +++     P+   +++LI GLC  G + 
Sbjct: 226 FDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKD-GCNPNSVTYSTLINGLCNEGRIG 284

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A+ + EEM    IE     Y+  IS+L   GR ++   +++ M ++GC P+  TY A+I
Sbjct: 285 EAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAII 344

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           SG  +    E A  +  +M  +G   N ++YN ++  LC +G+
Sbjct: 345 SGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGR 387



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 141/333 (42%), Gaps = 40/333 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y+ +I +L     F    +I   ++    +   +     + G +G   + E+A+ +
Sbjct: 371 NTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDI-EKAMVV 429

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F++M       TV  +NTL+   L  G L+       +M E    PD  +Y  LI G   
Sbjct: 430 FNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCK 489

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--------MRV 216
             +L+ A   F EM+K  + P   T+  +I G C E ++D AL L E +        +  
Sbjct: 490 GGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIET 549

Query: 217 YN--------------------------VKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
           YN                          ++P+   + SLI GLC     +LA  +  EM 
Sbjct: 550 YNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEME 609

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
           +     +A  Y+SLI  L + G+ +      + + E GC+P   TY+ L+SG C+E    
Sbjct: 610 KKNCLPNAHTYTSLIYGLCQEGKVDA----AERLTENGCEPTIDTYSTLVSGLCREGRSN 665

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            A  +++ M +KG   +   Y  +L   CK  K
Sbjct: 666 EASQLVENMKEKGLSPSMEIYCSLLVAHCKSLK 698



 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 93/226 (41%), Gaps = 34/226 (15%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ II+ L +   F E ++   ++  +  + P  I + ++I    +      A ++F EM
Sbjct: 550 YNAIISGLSKGNRFSEAEKFCAKMT-EQGLQPNTITYTSLINGLCKNTATNLAFKIFHEM 608

Query: 110 SSFNV-------------------------------QMTVKFFNTLLNPKLTCGKLDRMK 138
              N                                + T+  ++TL++     G+ +   
Sbjct: 609 EKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTENGCEPTIDTYSTLVSGLCREGRSNEAS 668

Query: 139 ELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           +L + M EK +SP    Y  L+     S +++ A ++F+ M  +  QP L  +  LI  L
Sbjct: 669 QLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICAL 728

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
           C   R +EAL + + +++      D  V+  L+ GL   G+  L +
Sbjct: 729 CGVSRAEEALNIFQSLLK-KQWNSDLIVWTVLVDGLLQEGDSDLCM 773


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 155/299 (51%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ ++ ++  L +A   +  +++  ++  +  + P  + +  ++  Y +   L  +L +
Sbjct: 222 NLVTFNSMVNGLCKAGRMEGARKVFDEMVREG-LAPDVVSYNTLLSGYCKVGCLHESLAV 280

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           F EM+   +   V  F +L++     G L++   L  Q+ E+ +  +  ++  LI G   
Sbjct: 281 FSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCK 340

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L+DA    +EM K  +QP++V +  LI G C   R+D A +L  + M    VKPD  
Sbjct: 341 KGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIRE-MEAKRVKPDVV 399

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++++I G C VG L  A  + ++M++  +  DA  YSSLI  L +  R N+   + + M
Sbjct: 400 TYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENM 459

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + G +P+  TY  LI G CKE + E A ++ DEM  KG   + ++Y+V++ GL K  +
Sbjct: 460 LQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSAR 518



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 145/276 (52%), Gaps = 17/276 (6%)

Query: 83  EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ 142
           E+ F  +I  + +   L+ AL   +EM    +Q +V  +N L+N     G++D  +EL +
Sbjct: 328 EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 387

Query: 143 IME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
            ME K V PD  +Y+ +I G      L+ A+++  +M+K+ + P  +T+ +LI GLC E 
Sbjct: 388 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEK 447

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
           R+++A +L E+++++  V+PD   + +LI G C  G +  AL + +EM+R  +  D   Y
Sbjct: 448 RLNDACELFENMLQL-GVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTY 506

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN---------------ALISGFCKE 306
           S LI+ L K+ R  E   +L ++      P+++ Y+               AL+ GFC +
Sbjct: 507 SVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMK 566

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
              + A  +   M D+  K +   Y++++ G C+ G
Sbjct: 567 GLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGG 602



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 147/297 (49%), Gaps = 9/297 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERALQMFD 107
           Y+ ++  L  A +    + +   L+H    V   +   N++      R RL E A+ +  
Sbjct: 121 YNAVLLALSDASLPSARRFLSSMLRHG---VAPNVYTYNILVRALCARGRL-EEAVGVVG 176

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM--EKYVSPDACSYNILIHGCVVS 165
           +M           +NTL+      G+LD  + +  +M  E    P+  ++N +++G   +
Sbjct: 177 DMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKA 236

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            R+E A KVFDEMV+  L P +V++ TL+ G C    + E+L +  + M    + PD   
Sbjct: 237 GRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSE-MTQRGLVPDVVT 295

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F SLI   C  G L  A+ +  +M    + M+   +++LI    K G  ++    ++EM+
Sbjct: 296 FTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMR 355

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + G +P+ V YNALI+G+CK    + A  ++ EM  K  K + ++Y+ I+ G CK G
Sbjct: 356 KCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVG 412



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 36/229 (15%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           +P   +YN ++   +    L  A +    M++  + P + T+  L+  LC   R++EA+ 
Sbjct: 115 APSVPAYNAVLLA-LSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVG 173

Query: 209 LKEDIM----------------------------RVY-------NVKPDGQVFASLIKGL 233
           +  D+                             RV        N KP+   F S++ GL
Sbjct: 174 VVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGL 233

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           C  G +  A  V +EMVR+ +  D   Y++L+S   K G  +E  A+  EM +RG  P+ 
Sbjct: 234 CKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDV 293

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           VT+ +LI   CK  + E A  ++ +M ++G + N +++  ++ G CK G
Sbjct: 294 VTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKG 342



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 138/316 (43%), Gaps = 51/316 (16%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +  R N + +  +I    +    D+    + +++    I P  + +  +I  Y +   ++
Sbjct: 322 RGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMR-KCGIQPSVVCYNALINGYCKLGRMD 380

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILI 159
            A ++  EM +  V+  V  ++T+++     G LD   +L Q +++K V PDA +Y+ LI
Sbjct: 381 LARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 440

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR---- 215
            G    +RL DA ++F+ M++  +QP   T+ TLI G C E  V++AL L ++++R    
Sbjct: 441 RGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVL 500

Query: 216 ----VYNVKPDG-----------------------------------------QVFASLI 230
                Y+V  +G                                         +   +L+
Sbjct: 501 PDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALL 560

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
           KG C  G +  A  V + M+    ++D  +YS LI    + G   +  +  K+M   G  
Sbjct: 561 KGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFS 620

Query: 291 PNSVTYNALISGFCKE 306
           PNS +  +L+ G  +E
Sbjct: 621 PNSTSTISLVRGLFEE 636



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 138/308 (44%), Gaps = 25/308 (8%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           + EA  +KP   +++ Y  II+   +    D   Q L+Q      ++P  I + ++I   
Sbjct: 388 EMEAKRVKP---DVVTYSTIISGYCKVGNLDSAFQ-LNQKMLKKGVLPDAITYSSLIRGL 443

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDA 152
              + L  A ++F+ M    VQ     + TL++     G +++   L  +++ K V PD 
Sbjct: 444 CEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDV 503

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY---------------GL 197
            +Y++LI+G   S R ++A ++  ++      P  + +  L+                G 
Sbjct: 504 VTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGF 563

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C++  + EA K+ + ++   N K DG V++ LI G C  G +  AL   ++M+R     +
Sbjct: 564 CMKGLMKEADKVYQSMLD-RNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPN 622

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTI 315
           +    SL+  LF+ G   E    ++++    C P  ++    ALI    KE + +A   +
Sbjct: 623 STSTISLVRGLFEEGMVVEADNAIQDLLT--CCPLADAEASKALIDLNRKEGNVDALIDV 680

Query: 316 LDEMGDKG 323
           L  M   G
Sbjct: 681 LCGMARDG 688



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 30/63 (47%)

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L  M   G  PN  TYN L+   C     E A  ++ +M   GC  N ++YN ++   C+
Sbjct: 140 LSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCR 199

Query: 341 DGK 343
            G+
Sbjct: 200 AGE 202


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 151/304 (49%), Gaps = 9/304 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  ++  Y  +I  L       E ++ L ++ +   + P  + +  +I    +   ++
Sbjct: 40  KGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRN-LTPNVVTYTVLIDGLCKGGRVD 98

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYN 156
            A+ +  +M    V   V + N+L++      K +R  E + ++E+ V     PD  +Y 
Sbjct: 99  EAVALLSKMRKKCVPTAVTY-NSLISGLC---KAERASEAYDLLEEMVYSGCIPDIFTYT 154

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            LI G   S++ +DA +VF+++V R  +P +VT+  LI GLC E R+ EA+ L   +++ 
Sbjct: 155 TLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKS 214

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
            +  P+   + SLI G C +G++  A+ + E M       D   Y++L++   K  R ++
Sbjct: 215 GSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDD 274

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +L +M  +G  P+ VT+ +L+ G C+E     A  IL EM  K C     +YN IL 
Sbjct: 275 AYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILD 334

Query: 337 GLCK 340
           G C+
Sbjct: 335 GYCR 338



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 130/246 (52%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL 158
           L  A +  +EM++ N+   V  +  L++     G++D    L   M K   P A +YN L
Sbjct: 62  LHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSL 121

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   + R  +A+ + +EMV     P + T+ TLI G C   + D+AL++ E ++    
Sbjct: 122 ISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLV-ARG 180

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM-DAGIYSSLISALFKAGRKNEF 277
            +PD   ++ LI GLC  G L  A+ +   M++    M +   Y+SLIS   + G+ +E 
Sbjct: 181 FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEA 240

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +L+ M E G  P+ VTY  L++GFCK    + A+ +L++M  KG   + +++  ++ G
Sbjct: 241 MNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDG 300

Query: 338 LCKDGK 343
           LC++ +
Sbjct: 301 LCRENR 306



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 154/340 (45%), Gaps = 20/340 (5%)

Query: 3   TSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKM 62
           T+ I   C+     + +  L+   N N  PN             ++ Y ++I  L +   
Sbjct: 50  TAVIHALCVENRLHEARKFLEEMANRNLTPN-------------VVTYTVLIDGLCKGGR 96

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
            DE   +L +++   + VP  + + ++I    +A     A  + +EM        +  + 
Sbjct: 97  VDEAVALLSKMRK--KCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYT 154

Query: 123 TLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
           TL+       K D    +F Q++ +   PD  +Y+ LI G     RL++A  +F  M+K 
Sbjct: 155 TLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKS 214

Query: 182 -RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
               P  VT+ +LI G C   ++DEA+ L E +       PD   + +L+ G C +  L 
Sbjct: 215 GSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAET-GSSPDVVTYTTLMNGFCKLARLD 273

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  +  +M R  +  D   ++SL+  L +  R ++   IL EM+ + C P   TYN ++
Sbjct: 274 DAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTIL 333

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            G+C+    E A   + E  D  C  N +S+N+++ GLCK
Sbjct: 334 DGYCRANQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCK 371



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 111/216 (51%), Gaps = 7/216 (3%)

Query: 133 KLDRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
           K+ R+++    + K VS    PD  +Y  +IH   V  RL +A K  +EM  R L P +V
Sbjct: 23  KVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVV 82

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           T+  LI GLC   RVDEA+ L   + +     P    + SLI GLC     S A  + EE
Sbjct: 83  TYTVLIDGLCKGGRVDEAVALLSKMRK--KCVPTAVTYNSLISGLCKAERASEAYDLLEE 140

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           MV      D   Y++LI+   K+ + ++   + +++  RG +P+ VTY+ LI G CKE  
Sbjct: 141 MVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGR 200

Query: 309 FEAAFTILDEMGDKG-CKANPISYNVILGGLCKDGK 343
            + A  +   M   G C  N ++YN ++ G C+ GK
Sbjct: 201 LKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGK 236



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 109/195 (55%), Gaps = 2/195 (1%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           S D  +Y  LI G    +RLE A     +MV +   P + T+  +I+ LC+E R+ EA K
Sbjct: 8   SADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARK 67

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
             E+ M   N+ P+   +  LI GLC  G +  A+ +  +M R K    A  Y+SLIS L
Sbjct: 68  FLEE-MANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNSLISGL 125

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            KA R +E   +L+EM   GC P+  TY  LI+GFCK +  + A  + +++  +G + + 
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDV 185

Query: 329 ISYNVILGGLCKDGK 343
           ++Y+ ++ GLCK+G+
Sbjct: 186 VTYSCLIDGLCKEGR 200



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF-CNVIGFYGRARLLERALQ 104
           ++  Y  +IT   ++K  D+  ++  QL       P  + + C + G     RL E A+ 
Sbjct: 149 DIFTYTTLITGFCKSKKSDDALRVFEQLVARG-FRPDVVTYSCLIDGLCKEGRLKE-AID 206

Query: 105 MFDEM-SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGC 162
           +F  M  S +       +N+L++     GK+D    L + M E   SPD  +Y  L++G 
Sbjct: 207 LFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGF 266

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
               RL+DA+ + ++M ++ L P +VTF +L+ GLC E R+ +A+ +  + MR  +  P 
Sbjct: 267 CKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGE-MRRKSCSPT 325

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG----IYSSLISALFKAGRKNEFP 278
              + +++ G C   +L  A     E      EMD       ++ +I  L K  R +E  
Sbjct: 326 VYTYNTILDGYCRANQLEEARKFMLE------EMDCPPNVVSFNIMIRGLCKVNRSSEAM 379

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK-GCKANPISYNVILGG 337
            +++E + R C P+ V Y  +I G C+E+  + A  +  +M ++ GC  N I+Y+ ++ G
Sbjct: 380 ELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTG 439

Query: 338 LCKDG 342
           LC  G
Sbjct: 440 LCNAG 444



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 148/298 (49%), Gaps = 6/298 (2%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           + Y+ +I+ L +A+   E   +L ++ + +  +P    +  +I  + +++  + AL++F+
Sbjct: 116 VTYNSLISGLCKAERASEAYDLLEEMVY-SGCIPDIFTYTTLITGFCKSKKSDDALRVFE 174

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PDACSYNILIHGCVVS 165
           ++ +   +  V  ++ L++     G+L    +LF  M K  S  P+  +YN LI G    
Sbjct: 175 QLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRM 234

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            ++++A  + + M +    P +VT+ TL+ G C   R+D+A  L   + R   + PD   
Sbjct: 235 GKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTR-KGLTPDVVT 293

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F SL+ GLC    LS A+ +  EM R         Y++++    +A +  E    +  ++
Sbjct: 294 FTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LE 351

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           E  C PN V++N +I G CK      A  +++E   + C  + + Y  ++ GLC++ K
Sbjct: 352 EMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKK 409



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 139/316 (43%), Gaps = 36/316 (11%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + FR +++ Y  +I  L +     E   +  ++      +P  + + ++I  + R   ++
Sbjct: 179 RGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMD 238

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
            A+ + + M+       V  + TL+N      +LD   +L  Q+  K ++PD  ++  L+
Sbjct: 239 EAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLM 298

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G     RL DA  +  EM ++   PT+ T+ T++ G C   +++EA K   + M   + 
Sbjct: 299 DGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEM---DC 355

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   F  +I+GLC V   S A+ + EE  R +   D  +Y+++I  L +  + +E   
Sbjct: 356 PPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACR 415

Query: 280 ILKEMKE--------------------------------RGCKPNSVTYNALISGFCKEE 307
           + ++M E                                +GC PN  TYN LI  F K  
Sbjct: 416 VYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYIEKGCVPNIGTYNLLIDAFRKAN 475

Query: 308 DFEAAFTILDEMGDKG 323
             E A  +LD+M  +G
Sbjct: 476 RDEDARELLDDMVQRG 491



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C  + VTY +LI G CK +  E A   L +M  KG   +  +Y  ++  LC + +
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENR 61


>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           salviifolia]
          Length = 431

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 142/258 (55%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++  Y R  +L+   ++   M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 175 PSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADEL 234

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 294

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L +D+ R   +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 295 KGDLKQAHDLIDDMSRK-GLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDV 353

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           +Y++LIS L + GR  +   +L+EM   G  P++ TY  +I+ FCK+ D      +L EM
Sbjct: 354 VYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEM 413

Query: 320 GDKGCKANPISYNVILGG 337
              G   + ++YNV++ G
Sbjct: 414 QRDGHVPSVVTYNVLMNG 431



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 136/256 (53%), Gaps = 2/256 (0%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY- 147
           V+ +  + +  +     ++E+       ++ FFN L++     G +   + +F  + K+ 
Sbjct: 113 VLEYLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 172

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P A SYN L++G +    L++ +++   M+   +QP + T+  LI GL  E ++D+A 
Sbjct: 173 LRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDAD 232

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           +L ++ M V  + P+G  F +LI G C  G + LA+ + ++M+   +  D   Y++LI  
Sbjct: 233 ELFDE-MLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYG 291

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L K G   +   ++ +M  +G KP+ +TY  LI G CKE D ++AF     M  +  + +
Sbjct: 292 LCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLD 351

Query: 328 PISYNVILGGLCKDGK 343
            + Y  ++ GLC++G+
Sbjct: 352 DVVYTALISGLCQEGR 367



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 130/244 (53%), Gaps = 6/244 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +   +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 161 AQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKS--AMLASGVQPDVYTYSVL 218

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G     +++DA ++FDEM+ + L P  VTF TLI G C   RVD A+++ + ++   +
Sbjct: 219 INGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QS 277

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   + +LI GLC  G+L  A  + ++M R  ++ D   Y++LI    K G  +   
Sbjct: 278 LLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAF 337

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
              K M +   + + V Y ALISG C+E     A  +L EM   G   +  +Y +I+   
Sbjct: 338 EHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEF 397

Query: 339 CKDG 342
           CK G
Sbjct: 398 CKKG 401


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 142/266 (53%), Gaps = 2/266 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           + P    F ++I  Y +   +++A +++++M    +   V  F  L++   +  K+    
Sbjct: 466 VEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEAS 525

Query: 139 ELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           ELF +++E+ + P   +YN+LI G     +++ A+++ ++M ++ L P   T+  LI GL
Sbjct: 526 ELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGL 585

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C   RV +A    +D+ +  NVK +   +++L+ G C  G L  AL    EM++  I MD
Sbjct: 586 CSTGRVSKAKDFIDDLHK-QNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMD 644

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              ++ LI    K   +  F  +LK+M ++G +P++V Y ++I  + KE  F+ AF   D
Sbjct: 645 LVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWD 704

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
            M  + C  N ++Y  ++ GLCK G+
Sbjct: 705 LMVTEECFPNVVTYTALMNGLCKAGE 730



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 139/302 (46%), Gaps = 3/302 (0%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  +++ Y+++I  L +     E  ++   L     +    + +C ++  + R +  E  
Sbjct: 256 FDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLG-GKGLAADVVTYCTLVLGFCRLQQFEAG 314

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
           +Q+ DEM       T    + L++     GK+D   EL   + ++   P+   YN LI+ 
Sbjct: 315 IQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINS 374

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 L+ A  ++  M    L+P  +T+  LI   C   R+D A+   + +++   +  
Sbjct: 375 LCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQD-GIGE 433

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
               + SLI G C  G+LS A  +  EM    +E  A  ++SLIS   K  +  +   + 
Sbjct: 434 TVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLY 493

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            +M + G  PN  T+ ALISG C       A  + DE+ ++  K   ++YNV++ G C+D
Sbjct: 494 NKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRD 553

Query: 342 GK 343
           GK
Sbjct: 554 GK 555



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 124/257 (48%), Gaps = 10/257 (3%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM----EK 146
           G+    RL+E AL    EM    + M +     L++  L   + DR K  F ++    ++
Sbjct: 619 GYCQEGRLME-ALSASCEMIQRGINMDLVCHAVLIDGALK--QPDR-KTFFDLLKDMHDQ 674

Query: 147 YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA 206
            + PD   Y  +I         + A++ +D MV     P +VT+  L+ GLC    +D A
Sbjct: 675 GLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRA 734

Query: 207 LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266
             L +  M+  NV P+   +   +  L   G +  A+G+   M++  +  +   ++ +I 
Sbjct: 735 GLLFKR-MQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLA-NTVTHNIIIR 792

Query: 267 ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326
              K GR +E   +L EM E G  P+ VTY+ LI  +C+  +  A+  + D M ++G + 
Sbjct: 793 GFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEP 852

Query: 327 NPISYNVILGGLCKDGK 343
           + ++YN+++ G C +G+
Sbjct: 853 DLVAYNLLIYGCCVNGE 869



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 149/362 (41%), Gaps = 63/362 (17%)

Query: 17  DPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD 76
           D KLAL+ F       N    H  K   ++   Y +++  L  +++F     +LH L   
Sbjct: 82  DAKLALRFF-------NFLGLH--KNMNHSTTSYAIMVHALVHSRLFWPANSLLHTLL-- 130

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
            R    + +F + +  Y R +        F     FN+ +     N +L+ ++     D 
Sbjct: 131 LRESHPKCVFSHFLDSYKRCK--------FSSTLGFNLLVQ----NYVLSSRI----FDA 174

Query: 137 MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP----------- 185
           +  +  +    + P+  + + L++G +  R+    W++FDE V   ++P           
Sbjct: 175 VVIVKLMFANNLLPEVRTLSALLNGLLKVRKFITVWELFDESVNAGVRPDPYTCSAVVRS 234

Query: 186 ------------------------TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                                   ++VT+  LI+GLC   RV EA+++K  +     +  
Sbjct: 235 MCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGG-KGLAA 293

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +L+ G C + +    + + +EMV           S L+  L K G+ ++   ++
Sbjct: 294 DVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELV 353

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            ++   G  PN   YNALI+  CK  D + A  +   M     + N I+Y++++   C+ 
Sbjct: 354 VKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRS 413

Query: 342 GK 343
           G+
Sbjct: 414 GR 415



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 109/265 (41%), Gaps = 41/265 (15%)

Query: 59  RAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV 118
           R   FD ++ +     HD  + P  +I+ ++I  Y +    ++A + +D M +       
Sbjct: 661 RKTFFDLLKDM-----HDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVT------- 708

Query: 119 KFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
                              +E F        P+  +Y  L++G   +  ++ A  +F  M
Sbjct: 709 -------------------EECF--------PNVVTYTALMNGLCKAGEMDRAGLLFKRM 741

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
               + P  +T+G  +  L  E  + EA+ L   +++   +  +      +I+G C +G 
Sbjct: 742 QAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLK--GLLANTVTHNIIIRGFCKLGR 799

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
              A  V  EM  + I  D   YS+LI    ++G       +   M  RG +P+ V YN 
Sbjct: 800 FHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNL 859

Query: 299 LISGFCKEEDFEAAFTILDEMGDKG 323
           LI G C   + + AF + D+M  +G
Sbjct: 860 LIYGCCVNGELDKAFELRDDMLRRG 884


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 145/267 (54%), Gaps = 2/267 (0%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           RI    + F  VI    +    ++A  + ++M ++    +V  +NT+++     GK+ + 
Sbjct: 224 RIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKA 283

Query: 138 KELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
             L  +++ K + P+  ++NILI G      +  A KVF+EM ++ LQP +VT+ +LI G
Sbjct: 284 DALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLING 343

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC   ++DEAL L +D M    +KP+   + +LI G C    L  A  + +++ +  +  
Sbjct: 344 LCSNGKLDEALGL-QDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAP 402

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +   +++LI A  KAGR ++   +   M + G  PN  TYN LI GFC+E + + A  + 
Sbjct: 403 NVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLA 462

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
            EM   G KA+ ++YN+++  LCK G+
Sbjct: 463 KEMEGNGLKADLVTYNILVDALCKKGE 489



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 153/296 (51%), Gaps = 6/296 (2%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  +++ Y+ II    +A    +   +L ++    RI P EI F  +I  + R   +  A
Sbjct: 260 FSPSVITYNTIIDGYCKAGKMFKADALLKEMVAK-RIHPNEITFNILIDGFCRDENVTAA 318

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
            ++F+EM    +Q  V  +N+L+N   + GKLD    L   M    + P+  +YN LI+G
Sbjct: 319 KKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALING 378

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
               + L++A ++ D++ KR L P ++TF TLI       R+D+A  L+  +M    V P
Sbjct: 379 FCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRS-MMLDTGVCP 437

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   +  LI G C  G +  A  + +EM  + ++ D   Y+ L+ AL K G   +   +L
Sbjct: 438 NVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLL 497

Query: 282 KEM---KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            EM   +++G + N VTYN LI GFC +   E A  +L+EM +KG   N  +Y+++
Sbjct: 498 DEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL 553



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 158/316 (50%), Gaps = 18/316 (5%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFC-NVIGFYGRARL----- 98
           +N+  +  ++  L  AK +++++ +L     +       I    +V+G +G A       
Sbjct: 105 HNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHSLSVLGSWGCANSIIVDM 164

Query: 99  ----------LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKY 147
                     ++ AL+ FD    +  +++    N +L   +  G++  ++ ++ +++ + 
Sbjct: 165 LVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRR 224

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           +  +  +++++I+G     + + A  V ++M      P+++T+ T+I G C   ++ +A 
Sbjct: 225 IGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKAD 284

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            L ++ M    + P+   F  LI G C    ++ A  V EEM R  ++ +   Y+SLI+ 
Sbjct: 285 ALLKE-MVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLING 343

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L   G+ +E   +  +M   G KPN VTYNALI+GFCK++  + A  +LD++G +G   N
Sbjct: 344 LCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPN 403

Query: 328 PISYNVILGGLCKDGK 343
            I++N ++    K G+
Sbjct: 404 VITFNTLIDAYGKAGR 419


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 139/294 (47%), Gaps = 5/294 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I  L +    D    +  ++       P    +  ++    +   L+ A  +
Sbjct: 45  DVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAV 104

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             E    +    V  +NTL+      G++D     F Q+ E+   P   S+N +I G   
Sbjct: 105 IAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCR 164

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +RRL DA +VF+EM+ R   P LVT+  +I GLC   ++DEA +L  D M     +PD  
Sbjct: 165 ARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLL-DRMVSEGCRPDLV 223

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  L+ G  A G L  ALG+   MV      D   Y+ +I  L K GR ++   I +E+
Sbjct: 224 AYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFREL 283

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
               C PN VTY+ALI G+C+    +    ++ EM    C+ N ++YN ++ GL
Sbjct: 284 VANKCSPNVVTYSALIGGYCRASRVDEGGKVMREM---ACRPNVVTYNTMIWGL 334



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 121/248 (48%), Gaps = 4/248 (1%)

Query: 99  LERALQMFD-EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY--VSPDACSY 155
           + +AL+ FD  +   + Q  V  + TL+N     G++D   +LF+ M       P+A +Y
Sbjct: 26  VAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTY 85

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N L+ G     RL+ A  V  E  KR   P +VT+ TL+  L    RVDEAL     +  
Sbjct: 86  NALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTE 145

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
              V P    F ++I GLC    L+ AL V  EM+      +   YS +I  L K+ + +
Sbjct: 146 EGYV-PTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLD 204

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E   +L  M   GC+P+ V Y  L+ GF      ++A  +L  M  +GC  + ++Y V++
Sbjct: 205 EAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVI 264

Query: 336 GGLCKDGK 343
             LCK G+
Sbjct: 265 DKLCKVGR 272



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 99/188 (52%), Gaps = 1/188 (0%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVK-RRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
           + +I++ G     R+  A + FD  ++    QP +V++ TLI GLC   RVD A  L   
Sbjct: 12  TTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRK 71

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           ++     +P+   + +L+ GLC    L  A  V  E  +     D   Y++L++ALF+ G
Sbjct: 72  MVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLG 131

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           R +E  A   +M E G  P  V++NA+I+G C+      A  + +EM D+    N ++Y+
Sbjct: 132 RVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYS 191

Query: 333 VILGGLCK 340
           V++ GLCK
Sbjct: 192 VVIDGLCK 199



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 112/224 (50%), Gaps = 2/224 (0%)

Query: 121 FNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +N L++      +LD  + +  +  ++  +PD  +YN L+       R+++A   F +M 
Sbjct: 85  YNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMT 144

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           +    PTLV+F  +I GLC   R+ +AL++  +++   +  P+   ++ +I GLC   +L
Sbjct: 145 EEGYVPTLVSFNAIITGLCRARRLADALEVFNEMID-RDFHPNLVTYSVVIDGLCKSDQL 203

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A  + + MV +    D   Y+ L+     AGR +    +L+ M  +GC P+ VTY  +
Sbjct: 204 DEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVV 263

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I   CK    + A  I  E+    C  N ++Y+ ++GG C+  +
Sbjct: 264 IDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASR 307



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 122/263 (46%), Gaps = 12/263 (4%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + F  +++ Y+ ++  L +    DE      Q+  +   VP  + F  +I    RAR L 
Sbjct: 111 RDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEG-YVPTLVSFNAIITGLCRARRLA 169

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYN 156
            AL++F+EM   +    +  ++ +++      K D++ E  Q++++ VS    PD  +Y 
Sbjct: 170 DALEVFNEMIDRDFHPNLVTYSVVIDGLC---KSDQLDEAQQLLDRMVSEGCRPDLVAYT 226

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            L+ G   + RL+ A  +   MV +   P +VT+  +I  LC   RVD+A ++  +++  
Sbjct: 227 PLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELV-A 285

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
               P+   +++LI G C    +     V  EM       +   Y+++I  L    R  E
Sbjct: 286 NKCSPNVVTYSALIGGYCRASRVDEGGKVMREMA---CRPNVVTYNTMIWGLSMVDRNEE 342

Query: 277 FPAILKEMKERGCKPNSVTYNAL 299
              + +EM E G  P++ TY  L
Sbjct: 343 AYGMFREMSECGFVPDARTYRGL 365



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 96/194 (49%), Gaps = 6/194 (3%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + F  NL+ Y ++I  L ++   DE QQ+L ++  +    P  + +  ++  +  A  L+
Sbjct: 181 RDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEG-CRPDLVAYTPLVLGFSAAGRLD 239

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
            AL +   M S      V  +  +++     G++D   E+F +++    SP+  +Y+ LI
Sbjct: 240 SALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALI 299

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G   + R+++  KV  EM  R   P +VT+ T+I+GL +  R +EA  +  ++     V
Sbjct: 300 GGYCRASRVDEGGKVMREMACR---PNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFV 356

Query: 220 KPDGQVFASLIKGL 233
            PD + +  L + L
Sbjct: 357 -PDARTYRGLKRAL 369


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 148/261 (56%), Gaps = 3/261 (1%)

Query: 84  IIFCN-VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELF 141
           ++ CN ++G   +   +E   ++FD M +  V   V  +  +++     G + D  + L 
Sbjct: 180 LLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLL 239

Query: 142 QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
           ++ EK  SP+  +YN++I G   +R L++A ++   MV + L P L T+  LI G C+E 
Sbjct: 240 EMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEK 299

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
           R  EA  +  +++ V  +KP+   + +LI G    G++  A  +K+EMV   IE +  I+
Sbjct: 300 RSREAKLMLLEMIDV-GLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIW 358

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           ++L++ + KAG+  +   I++EM E+G +P+S TY+ LI G C+ ++   AF +LDEM  
Sbjct: 359 NTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKK 418

Query: 322 KGCKANPISYNVILGGLCKDG 342
           +      ++Y+VI+ GLC+ G
Sbjct: 419 RKLAPTVLTYSVIINGLCRCG 439



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 165/334 (49%), Gaps = 38/334 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ ++ ++  + +A   ++  +I+ ++  +  + P    +  +I  + R + + RA ++
Sbjct: 354 NLIIWNTLLNGVCKAGKMEKALEIMQEM-MEKGVEPDSQTYSLLIEGHCRGQNMARAFEL 412

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLD------------------------------ 135
            DEM    +  TV  ++ ++N    CG L                               
Sbjct: 413 LDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAK 472

Query: 136 --RMKELFQIMEKY----VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
             R++E   I+E+     + PD   YN LI G   ++R+E+A     EM++RRL+P   T
Sbjct: 473 EGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHT 532

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           +G  I G      ++ A +   +++    V P+  ++ +LI+G C  G ++ A  V   +
Sbjct: 533 YGAFIDGYSKAGEMEIADRYFNEMLSC-GVLPNVGIYTALIEGHCKEGNVTEAFSVFRFI 591

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           +  ++  D   YS LI  L + G+ +E   I  E++E+G  PN+ TYN+LISG CK+ + 
Sbjct: 592 LSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNV 651

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + A  +L+EM  KG   + ++YN+++ GLCK G+
Sbjct: 652 DKASQLLEEMCIKGINPDIVTYNILIDGLCKAGE 685



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 153/295 (51%), Gaps = 4/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I    +AK  +E +  L ++  + R+ P    +   I  Y +A  +E A + F+EM
Sbjct: 498 YNSLIIGFCKAKRMEEARTYLMEML-ERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEM 556

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRL 168
            S  V   V  +  L+      G +     +F+ I+ + V  D  +Y++LIHG   + ++
Sbjct: 557 LSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKM 616

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A+ +F E+ ++ L P   T+ +LI G C +  VD+A +L E+ M +  + PD   +  
Sbjct: 617 HEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEE-MCIKGINPDIVTYNI 675

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI GLC  GE+  A  + +++    +  +   Y++++    K+        +L+EM  RG
Sbjct: 676 LIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG 735

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             P++  YN +++  CKEE FE A  +  EM +KG  A+ +S+N ++ G CK GK
Sbjct: 736 VPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGYCKSGK 789



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 158/306 (51%), Gaps = 8/306 (2%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           AH + P  Y   +      K+G  K   + +++L ++  +    P  + +  +IG   RA
Sbjct: 208 AHKVLPDVYTYTNMISAHCKVGNVK---DAKRVLLEMG-EKGCSPNLVTYNVIIGGLCRA 263

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL--FQIMEKYVSPDACS 154
           RLL+ A+++   M    +   +  ++ L+N      K  R  +L   ++++  + P+  +
Sbjct: 264 RLLDEAIELKRSMVDKGLVPDLYTYDILIN-GFCMEKRSREAKLMLLEMIDVGLKPEPIT 322

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YN LI G +    +E A+++ DEMV   ++  L+ + TL+ G+C   ++++AL++ +++M
Sbjct: 323 YNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMM 382

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
               V+PD Q ++ LI+G C    ++ A  + +EM + K+      YS +I+ L + G  
Sbjct: 383 E-KGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNL 441

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
               AIL+EM   G KPN+V Y  L++   KE   E +  IL+ M ++G   +   YN +
Sbjct: 442 QGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSL 501

Query: 335 LGGLCK 340
           + G CK
Sbjct: 502 IIGFCK 507



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 147/305 (48%), Gaps = 6/305 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP   N + Y  ++T   +    +E + IL +++ +  I+P    + ++I  + +A+ +
Sbjct: 456 LKP---NAVVYTTLMTAHAKEGRVEESRMILERMR-EQGILPDVFCYNSLIIGFCKAKRM 511

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNIL 158
           E A     EM    ++     +   ++     G+++     F +++   V P+   Y  L
Sbjct: 512 EEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTAL 571

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G      + +A+ VF  ++ RR+   + T+  LI+GL    ++ EA  +  ++     
Sbjct: 572 IEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQE-KG 630

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + P+   + SLI G C  G +  A  + EEM    I  D   Y+ LI  L KAG      
Sbjct: 631 LLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAK 690

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +  +++ RG  PN VTY A++ G+CK ++  AAF +L+EM  +G   +   YNVIL   
Sbjct: 691 NLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFC 750

Query: 339 CKDGK 343
           CK+ K
Sbjct: 751 CKEEK 755



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 148/327 (45%), Gaps = 39/327 (11%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I  L R     E   I  +L+ +  ++P    + ++I    +   +++A Q+ +EM
Sbjct: 603 YSVLIHGLSRNGKMHEAFGIFSELQ-EKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 661

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF---------------------------- 141
               +   +  +N L++     G+++R K LF                            
Sbjct: 662 CIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNP 721

Query: 142 ----QIMEKY----VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
               Q++E+     V PDA  YN++++ C    + E A  +F EM+++    T V+F TL
Sbjct: 722 TAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFAST-VSFNTL 780

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G C   ++ EA  L E+++    + P+   + SLI   C  G +  A  +  EM    
Sbjct: 781 IEGYCKSGKLQEANHLLEEMIEKQFI-PNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERN 839

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           +   A  Y+SL+      G  +E  A+ +EM  +G +P+ +TY  +I  +C+E +   A 
Sbjct: 840 VMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEAC 899

Query: 314 TILDEMGDKGCKANPISYNVILGGLCK 340
            + DE+  KG   +  +Y+ ++  LCK
Sbjct: 900 KLKDEILVKGMPMSVAAYDALIQALCK 926



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 144/299 (48%), Gaps = 2/299 (0%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           +K    +++ Y+++I  L +A   +  + +   ++    + P  + +  ++  Y +++  
Sbjct: 663 IKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIE-GRGLTPNCVTYAAMVDGYCKSKNP 721

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILI 159
             A Q+ +EM    V      +N +LN      K ++  +LFQ M +       S+N LI
Sbjct: 722 TAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLI 781

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G   S +L++A  + +EM++++  P  VT+ +LI   C    + EA +L  + M+  NV
Sbjct: 782 EGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLE-MQERNV 840

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P  + + SL+ G   +G +S    + EEMV   IE D   Y  +I A  + G   E   
Sbjct: 841 MPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACK 900

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           +  E+  +G   +   Y+ALI   CK+E+F     +L+E+G+ G +    + +VI  G 
Sbjct: 901 LKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGF 959



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 96/194 (49%), Gaps = 1/194 (0%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P   S N L+   +   ++E  WKVFD M   ++ P + T+  +I   C    V +A ++
Sbjct: 178 PSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRV 237

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
             + M      P+   +  +I GLC    L  A+ +K  MV   +  D   Y  LI+   
Sbjct: 238 LLE-MGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFC 296

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
              R  E   +L EM + G KP  +TYNALI GF ++ D E AF I DEM   G +AN I
Sbjct: 297 MEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLI 356

Query: 330 SYNVILGGLCKDGK 343
            +N +L G+CK GK
Sbjct: 357 IWNTLLNGVCKAGK 370



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 137/308 (44%), Gaps = 11/308 (3%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-G 91
           +D E   L P   N + Y  ++    ++K      Q+L ++    R VP +    NVI  
Sbjct: 694 DDIEGRGLTP---NCVTYAAMVDGYCKSKNPTAAFQLLEEML--LRGVPPDAFIYNVILN 748

Query: 92  FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSP 150
           F  +    E+AL +F EM       TV F NTL+      GKL     L + ++EK   P
Sbjct: 749 FCCKEEKFEKALDLFQEMLEKGFASTVSF-NTLIEGYCKSGKLQEANHLLEEMIEKQFIP 807

Query: 151 DACSYNILI-HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           +  +Y  LI H C     + +A +++ EM +R + PT  T+ +L++G      + E   L
Sbjct: 808 NHVTYTSLIDHNCKAGM-MGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSAL 866

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            E+ M    ++PD   +  +I   C  G +  A  +K+E++   + M    Y +LI AL 
Sbjct: 867 FEE-MVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALC 925

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           K     E   +L E+ E G +    T + +  GF    + + A  +L  M   G  +N  
Sbjct: 926 KKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTT 985

Query: 330 SYNVILGG 337
           S   ++ G
Sbjct: 986 SLGDLVDG 993


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 158/338 (46%), Gaps = 41/338 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           + + Y++ I  L +A+  D+  Q+L ++  + + +P  + +  ++    +A  L+ A+ +
Sbjct: 41  DYVTYNVFIDGLCKAERVDDAFQLLKKMD-EKKCLPTTVTYTALVDGLLKAGRLDEAMAV 99

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            ++M       T+K +  +++     G+++  + +F  ++     PDA  Y  LI G   
Sbjct: 100 LEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCK 159

Query: 165 SRRLEDAWKVFDEMVKRRLQ----PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           S + E+A+ ++ E   R+      P +VT+ +LI GLC   R+ EA ++ +D        
Sbjct: 160 SGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFI 219

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA------------- 267
           PD   + S+I GLC +G +        EM     E DA  Y++LI               
Sbjct: 220 PDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRV 279

Query: 268 ----------------------LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
                                 L KAGR  E  A    M+ERGC    VTY+AL+ GFC 
Sbjct: 280 YRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCS 339

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           E +  AA  +   M D+GC+ N +SYN+I+ GLC+ GK
Sbjct: 340 EGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGK 377



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 138/307 (44%), Gaps = 48/307 (15%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  VI    R + L+ A  + +       +     +N  ++      K +R+ + 
Sbjct: 5   PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLC---KAERVDDA 61

Query: 141 FQIM----EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           FQ++    EK   P   +Y  L+ G + + RL++A  V ++MV++   PTL T+  +I G
Sbjct: 62  FQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDG 121

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE------------------ 238
           L    RV+EA ++  D++     +PD  V+ +LIKGLC  G+                  
Sbjct: 122 LSKAGRVEEARRIFVDMLG-NGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHA 180

Query: 239 ---------LSLALGV-------------KEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
                     SL  G+              +E V      DA  Y+S+I  L K GR  E
Sbjct: 181 TAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEE 240

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
                 EM+ RG +P++VTY ALI GF K +    A  +  +M   G   + ++YN+IL 
Sbjct: 241 GCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILD 300

Query: 337 GLCKDGK 343
           GLCK G+
Sbjct: 301 GLCKAGR 307



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 99/199 (49%), Gaps = 5/199 (2%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           SPD  ++ ++I+G    +RL++A+ V +  V+   +P  VT+   I GLC   RVD+A +
Sbjct: 4   SPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQ 63

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           L +  M      P    + +L+ GL   G L  A+ V E+MV          Y+ +I  L
Sbjct: 64  LLKK-MDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGL 122

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            KAGR  E   I  +M   GC+P++  Y ALI G CK    E A+ +  E   +   A  
Sbjct: 123 SKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATA 182

Query: 329 ----ISYNVILGGLCKDGK 343
               ++Y  ++ GLCK G+
Sbjct: 183 VPDVVTYTSLIDGLCKAGR 201



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 149/299 (49%), Gaps = 11/299 (3%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARL 98
           + +  + + Y  +I    +AKM  +  ++  Q+     +V    +  N+I  G     R+
Sbjct: 251 RGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVV--STVTYNIILDGLCKAGRV 308

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNI 157
            E A   F  M       TV  ++ L++   + G +    ELF+ ++++   P+  SYNI
Sbjct: 309 AE-AYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNI 367

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL-RVDEALKLKEDIMRV 216
           +I G   + +L  A+  F+++++RRL P + TF   ++GLC  L  V + ++L E ++  
Sbjct: 368 IIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVS- 426

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
               P+   ++ L+ G+C  G L +AL +  EMV   +  D  ++++LI  L  AGR +E
Sbjct: 427 QGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDE 486

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
              + +E+ ER   P++ +Y +L+ G  + E  E A  +   M  +GC   P  Y++ +
Sbjct: 487 ALEVFREL-ERRSAPDAWSYWSLLDGLSRCERMEEARLLSFHMKLQGCA--PRHYDLTV 542



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 158/347 (45%), Gaps = 11/347 (3%)

Query: 1   KPTSSIRLACLPRLQKD--PKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLG 58
           +P + +  A +  L K   P+ A  L+K  N   +   A P      +++ Y  +I  L 
Sbjct: 144 RPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVP------DVVTYTSLIDGLC 197

Query: 59  RAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV 118
           +A    E +Q+      +   +P  + + ++I    +   +E   + F EM +   +   
Sbjct: 198 KAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDA 257

Query: 119 KFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
             +  L++  +    + +   ++ Q+++        +YNI++ G   + R+ +A+  F  
Sbjct: 258 VTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLA 317

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M +R    T+VT+  L+ G C E  V  A++L   ++     +P+   +  +I+GLC  G
Sbjct: 318 MEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLD-RGCEPNLVSYNIIIRGLCRAG 376

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALF-KAGRKNEFPAILKEMKERGCKPNSVTY 296
           +L+ A    E++++ ++  D   +++ +  L  +    ++   + + M  +G  PN  +Y
Sbjct: 377 KLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSY 436

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + L+ G C+    E A  I  EM  +G   + + +N ++  LC  G+
Sbjct: 437 SILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGR 483



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 136/332 (40%), Gaps = 43/332 (12%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  ++  L +A   DE   +L Q+       P    +  VI    +A  +E A ++F +M
Sbjct: 80  YTALVDGLLKAGRLDEAMAVLEQMVEKGN-SPTLKTYTVVIDGLSKAGRVEEARRIFVDM 138

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-----EKYVSPDACSYNILIHGCVV 164
                +     +  L+      GK +    L++            PD  +Y  LI G   
Sbjct: 139 LGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCK 198

Query: 165 SRRLEDAWKVFD-EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
           + R+ +A +VFD E V+R   P  VT+ ++I GLC   RV+E  +   + MR    +PD 
Sbjct: 199 AGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHE-MRNRGYEPDA 257

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA---- 279
             +A+LI G      +  A  V  +M++    +    Y+ ++  L KAGR  E  A    
Sbjct: 258 VTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLA 317

Query: 280 -------------------------------ILKEMKERGCKPNSVTYNALISGFCKEED 308
                                          + + M +RGC+PN V+YN +I G C+   
Sbjct: 318 MEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGK 377

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
              A+   +++  +    +  ++N  L GLC+
Sbjct: 378 LAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQ 409



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 34/52 (65%)

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           C P+ V +  +I+G C+E+  + AF++L+     GC+ + ++YNV + GLCK
Sbjct: 3   CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCK 54


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 151/304 (49%), Gaps = 9/304 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  ++  Y  +I  L       E ++ L ++ +   + P  + +  +I    +   ++
Sbjct: 40  KGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRN-LTPNVVTYTVLIDGLCKGGRVD 98

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYN 156
            A+ +  +M    V   V + N+L++      K +R  E + ++E+ V     PD  +Y 
Sbjct: 99  EAVALLSKMRKKCVPTAVTY-NSLISGLC---KAERASEAYDLLEEMVYSGCIPDIFTYT 154

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            LI G   S++ +DA +VF+++V R  +P +VT+  LI GLC E R+ EA+ L   +++ 
Sbjct: 155 TLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKS 214

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
            +  P+   + SLI G C +G++  A+ + E M       D   Y++L++   K  R ++
Sbjct: 215 GSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDD 274

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +L +M  +G  P+ VT+ +L+ G C+E     A  IL EM  K C     +YN IL 
Sbjct: 275 AYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILD 334

Query: 337 GLCK 340
           G C+
Sbjct: 335 GYCR 338



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 130/246 (52%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL 158
           L  A +  +EM++ N+   V  +  L++     G++D    L   M K   P A +YN L
Sbjct: 62  LHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSL 121

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   + R  +A+ + +EMV     P + T+ TLI G C   + D+AL++ E ++    
Sbjct: 122 ISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLV-ARG 180

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM-DAGIYSSLISALFKAGRKNEF 277
            +PD   ++ LI GLC  G L  A+ +   M++    M +   Y+SLIS   + G+ +E 
Sbjct: 181 FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEA 240

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +L+ M E G  P+ VTY  L++GFCK    + A+ +L++M  KG   + +++  ++ G
Sbjct: 241 MNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDG 300

Query: 338 LCKDGK 343
           LC++ +
Sbjct: 301 LCRENR 306



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 154/340 (45%), Gaps = 20/340 (5%)

Query: 3   TSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKM 62
           T+ I   C+     + +  L+   N N  PN             ++ Y ++I  L +   
Sbjct: 50  TAVIHALCVENRLHEARKFLEEMANRNLTPN-------------VVTYTVLIDGLCKGGR 96

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
            DE   +L +++   + VP  + + ++I    +A     A  + +EM        +  + 
Sbjct: 97  VDEAVALLSKMRK--KCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYT 154

Query: 123 TLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
           TL+       K D    +F Q++ +   PD  +Y+ LI G     RL++A  +F  M+K 
Sbjct: 155 TLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKS 214

Query: 182 -RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
               P  VT+ +LI G C   ++DEA+ L E +       PD   + +L+ G C +  L 
Sbjct: 215 GSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAET-GSSPDVVTYTTLMNGFCKLARLD 273

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  +  +M R  +  D   ++SL+  L +  R ++   IL EM+ + C P   TYN ++
Sbjct: 274 DAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTIL 333

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            G+C+    E A   + E  D  C  N +S+N+++ GLCK
Sbjct: 334 DGYCRANQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCK 371



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 111/216 (51%), Gaps = 7/216 (3%)

Query: 133 KLDRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
           K+ R+++    + K VS    PD  +Y  +IH   V  RL +A K  +EM  R L P +V
Sbjct: 23  KVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVV 82

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           T+  LI GLC   RVDEA+ L   + +     P    + SLI GLC     S A  + EE
Sbjct: 83  TYTVLIDGLCKGGRVDEAVALLSKMRK--KCVPTAVTYNSLISGLCKAERASEAYDLLEE 140

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           MV      D   Y++LI+   K+ + ++   + +++  RG +P+ VTY+ LI G CKE  
Sbjct: 141 MVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGR 200

Query: 309 FEAAFTILDEMGDKG-CKANPISYNVILGGLCKDGK 343
            + A  +   M   G C  N ++YN ++ G C+ GK
Sbjct: 201 LKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGK 236



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 109/195 (55%), Gaps = 2/195 (1%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           S D  +Y  LI G    +RLE A     +MV +   P + T+  +I+ LC+E R+ EA K
Sbjct: 8   SADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARK 67

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
             E+ M   N+ P+   +  LI GLC  G +  A+ +  +M R K    A  Y+SLIS L
Sbjct: 68  FLEE-MANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNSLISGL 125

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            KA R +E   +L+EM   GC P+  TY  LI+GFCK +  + A  + +++  +G + + 
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDV 185

Query: 329 ISYNVILGGLCKDGK 343
           ++Y+ ++ GLCK+G+
Sbjct: 186 VTYSCLIDGLCKEGR 200



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF-CNVIGFYGRARLLERALQ 104
           ++  Y  +IT   ++K  D+  ++  QL       P  + + C + G     RL E A+ 
Sbjct: 149 DIFTYTTLITGFCKSKKSDDALRVFEQLVARG-FRPDVVTYSCLIDGLCKEGRLKE-AID 206

Query: 105 MFDEM-SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGC 162
           +F  M  S +       +N+L++     GK+D    L + M E   SPD  +Y  L++G 
Sbjct: 207 LFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGF 266

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
               RL+DA+ + ++M ++ L P +VTF +L+ GLC E R+ +A+ +  + MR  +  P 
Sbjct: 267 CKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGE-MRRKSCSPT 325

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG----IYSSLISALFKAGRKNEFP 278
              + +++ G C   +L  A     E      EMD       ++ +I  L K  R +E  
Sbjct: 326 VYTYNTILDGYCRANQLEEARKFMLE------EMDCPPNVVSFNIMIRGLCKVNRSSEAM 379

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK-GCKANPISYNVILGG 337
            +++E + R C P+ V Y  +I G C+E+  + A  +  +M ++ GC  N I+Y+ ++ G
Sbjct: 380 ELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITG 439

Query: 338 LCKDG 342
           LC  G
Sbjct: 440 LCNAG 444



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 148/298 (49%), Gaps = 6/298 (2%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           + Y+ +I+ L +A+   E   +L ++ + +  +P    +  +I  + +++  + AL++F+
Sbjct: 116 VTYNSLISGLCKAERASEAYDLLEEMVY-SGCIPDIFTYTTLITGFCKSKKSDDALRVFE 174

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PDACSYNILIHGCVVS 165
           ++ +   +  V  ++ L++     G+L    +LF  M K  S  P+  +YN LI G    
Sbjct: 175 QLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRM 234

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            ++++A  + + M +    P +VT+ TL+ G C   R+D+A  L   + R   + PD   
Sbjct: 235 GKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTR-KGLTPDVVT 293

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F SL+ GLC    LS A+ +  EM R         Y++++    +A +  E    +  ++
Sbjct: 294 FTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LE 351

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           E  C PN V++N +I G CK      A  +++E   + C  + + Y  ++ GLC++ K
Sbjct: 352 EMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKK 409



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 139/316 (43%), Gaps = 36/316 (11%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + FR +++ Y  +I  L +     E   +  ++      +P  + + ++I  + R   ++
Sbjct: 179 RGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMD 238

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
            A+ + + M+       V  + TL+N      +LD   +L  Q+  K ++PD  ++  L+
Sbjct: 239 EAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLM 298

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G     RL DA  +  EM ++   PT+ T+ T++ G C   +++EA K   + M   + 
Sbjct: 299 DGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEM---DC 355

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   F  +I+GLC V   S A+ + EE  R +   D  +Y+++I  L +  + +E   
Sbjct: 356 PPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACR 415

Query: 280 ILKEM--------------------------------KERGCKPNSVTYNALISGFCKEE 307
           + ++M                                 E+GC PN  TYN LI  F K  
Sbjct: 416 VYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYIEKGCVPNIGTYNLLIDAFRKAN 475

Query: 308 DFEAAFTILDEMGDKG 323
             E A  +LD+M  +G
Sbjct: 476 RDEDARELLDDMVQRG 491



 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C  + VTY +LI G CK +  E A   L +M  KG   +  +Y  ++  LC + +
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENR 61


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 158/300 (52%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I  L R+   D   ++  ++   T +VP  +I+ +++  +  A  +  A + 
Sbjct: 299 DMITYGTMIHGLCRSTDVDSAARVYSEMIK-TGLVPDVVIYNSLLKGFCHAGRVGEAWKF 357

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYNILIHGCV 163
           +D MS   ++  V  +N +L      G +D+  +L++++EK   +SPD  +++ +IHG  
Sbjct: 358 WDSMSVSGIR-NVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLC 416

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
                  + ++ +E      +    ++ ++I GLC + R+D+A+KL E I  + + KP+ 
Sbjct: 417 EKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKI-SMDSFKPNS 475

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
            ++ +LI G C   + S A+ V  +M  +        Y++LI  L KA +  E     +E
Sbjct: 476 HIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTRE 535

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M E+GC  +  TY +LI G C+++  + A  + +++ DKG + + + +N+++ GLC  GK
Sbjct: 536 MLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGK 595



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 156/369 (42%), Gaps = 72/369 (19%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL  Y++++  L      D    +   L+    + P  I +  ++  + +   L+ AL +
Sbjct: 158 NLQTYNIMLRSLCVRGDLDRAVTLFDSLRCRG-LAPDRITYSTLMSGFVKNNRLDNALYL 216

Query: 106 FDEMSSFNVQMTVKFFNTLL-------------------------NPKLTC--------G 132
            DEM S+ VQ     +N LL                         +P L           
Sbjct: 217 LDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLC 276

Query: 133 KLDRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
           KL   KE   + E+ V+    PD  +Y  +IHG   S  ++ A +V+ EM+K  L P +V
Sbjct: 277 KLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVV 336

Query: 189 TFGTLIYGLCLELRVDEALKLKEDI-------MRVYNV---------------------- 219
            + +L+ G C   RV EA K  + +       +  YN+                      
Sbjct: 337 IYNSLLKGFCHAGRVGEAWKFWDSMSVSGIRNVTSYNIMLKGLFDGGMVDKATDLWELLE 396

Query: 220 -----KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
                 PD   F+++I GLC  G  + +L + EE      E+D   YSS+IS L K GR 
Sbjct: 397 KDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRL 456

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           ++   + +++     KPNS  YNALI+GFC+   F  A  +  +M +  C    I+YN +
Sbjct: 457 DDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTL 516

Query: 335 LGGLCKDGK 343
           + GLCK  K
Sbjct: 517 IHGLCKAEK 525



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 164/333 (49%), Gaps = 20/333 (6%)

Query: 14  LQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL 73
            +K  ++  QL ++P  +PN             L  Y++++  L +  MF E   +  ++
Sbjct: 245 FEKAMRVWEQLVRDPGASPN-------------LATYNVMLDGLCKLGMFKEAGDVWERM 291

Query: 74  KHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133
             +    P  I +  +I    R+  ++ A +++ EM    +   V  +N+LL      G+
Sbjct: 292 VANNH-QPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGR 350

Query: 134 LDRMKELFQIMEKYVSPDACSYNILIHGCV---VSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           +    + +  M      +  SYNI++ G     +  +  D W++ ++     L P +VTF
Sbjct: 351 VGEAWKFWDSMSVSGIRNVTSYNIMLKGLFDGGMVDKATDLWELLEK--DDSLSPDMVTF 408

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
            T+I+GLC +   +++L++ E+  R    + D   ++S+I GLC  G L  A+ + E++ 
Sbjct: 409 STMIHGLCEKGFANKSLQILEE-ARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKIS 467

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
            D  + ++ IY++LI+   +A + ++   +  +M E  C P ++TYN LI G CK E + 
Sbjct: 468 MDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYL 527

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            A     EM +KGC  +  +Y  ++ GLC+D K
Sbjct: 528 EASRFTREMLEKGCMLDVNTYGSLIRGLCRDKK 560



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 151/297 (50%), Gaps = 3/297 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y++++  L    M D+   +   L+ D  + P  + F  +I          ++LQ+
Sbjct: 368 NVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQI 427

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
            +E  +   ++    ++++++     G+LD   +L++ I      P++  YN LI+G   
Sbjct: 428 LEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQ 487

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + +  DA +V+ +M +    PT +T+ TLI+GLC   +  EA +   +++       D  
Sbjct: 488 ASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLE-KGCMLDVN 546

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SLI+GLC   ++  AL +  +++   ++ D  +++ LI  L  AG+ +E   +L EM
Sbjct: 547 TYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEM 606

Query: 285 KERG-CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           KE+  C PN VTYN L+ GF +   F+ A ++   + + G   + ISYN  + GLC 
Sbjct: 607 KEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLCS 663



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 136/296 (45%), Gaps = 6/296 (2%)

Query: 52  LIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS- 110
           ++++   RA M D       +L       P       ++  + RAR    A   F  +S 
Sbjct: 89  VVLSAFSRALMPDAALAAFRRLPSFLGCNPGVRSHNALLDAFVRARRFSDADAFFASLSH 148

Query: 111 -SFNVQMT--VKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSR 166
            +F  ++   ++ +N +L      G LDR   LF  +  + ++PD  +Y+ L+ G V + 
Sbjct: 149 GAFGRRIAPNLQTYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNN 208

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           RL++A  + DEM    +QP  V +  L+ G       ++A+++ E ++R     P+   +
Sbjct: 209 RLDNALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATY 268

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
             ++ GLC +G    A  V E MV +  + D   Y ++I  L ++   +    +  EM +
Sbjct: 269 NVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIK 328

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            G  P+ V YN+L+ GFC       A+   D M   G + N  SYN++L GL   G
Sbjct: 329 TGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIR-NVTSYNIMLKGLFDGG 383



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 121/257 (47%), Gaps = 2/257 (0%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I+ L +    D+  ++  ++  D+   P   I+  +I  + +A     A++++ +M
Sbjct: 443 YSSMISGLCKDGRLDDAVKLYEKISMDS-FKPNSHIYNALINGFCQASKFSDAIRVYSQM 501

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGK-LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168
           +  +   T   +NTL++      K L+  +   +++EK    D  +Y  LI G    +++
Sbjct: 502 AENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKI 561

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A  ++++++ + LQ  +V    LI+GLC   +VDEA +L  ++    N  P+   + +
Sbjct: 562 DGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNT 621

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ G    G    A  +   ++ + +  D   Y++ I  L    R  E   +L EM   G
Sbjct: 622 LMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASG 681

Query: 289 CKPNSVTYNALISGFCK 305
             P ++T+N L+    K
Sbjct: 682 IIPTAITWNILVRAVIK 698



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 261 YSSLISALFKAGRKNEFPAILKEMKE----RGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +++L+ A  +A R ++  A    +      R   PN  TYN ++   C   D + A T+ 
Sbjct: 123 HNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIMLRSLCVRGDLDRAVTLF 182

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
           D +  +G   + I+Y+ ++ G  K+ +
Sbjct: 183 DSLRCRGLAPDRITYSTLMSGFVKNNR 209


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 141/258 (54%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++  Y R   L+   ++   M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 234

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 294

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M V  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 295 KGDLKQAHHLIDE-MSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEV 353

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP++ TY  +I+ FCK+ D      +L EM
Sbjct: 354 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGXKLLKEM 413

Query: 320 GDKGCKANPISYNVILGG 337
              G   + ++YNV++ G
Sbjct: 414 QRDGHVPSVVTYNVLMNG 431



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 131/239 (54%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   SYN L++G + 
Sbjct: 130 YEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++ +++   M+   +QP + T+  LI GLC E ++D+A +L ++ M V  + P+G 
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDE-MLVKGLVPNGV 248

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 308

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G KP+ +TY  LI G CKE D ++AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 309 SVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGR 367



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 131/244 (53%), Gaps = 6/244 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS--AMLASGVQPDVYTYSVL 218

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G     +++DA ++FDEM+ + L P  VTF TLI G C   RVD A+++ + ++   +
Sbjct: 219 INGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QS 277

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   + +LI GLC  G+L  A  + +EM    ++ D   Y++LI    K G  +   
Sbjct: 278 LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAF 337

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
              K M +   + + V Y ALISG C+E     A  +L EM   G K +  +Y +I+   
Sbjct: 338 EHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEF 397

Query: 339 CKDG 342
           CK G
Sbjct: 398 CKKG 401



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G      ++   + + G +P+ V+YN L+
Sbjct: 125 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 185 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 227


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 155/300 (51%), Gaps = 14/300 (4%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           YN   Y L   KLGR  M D MQQ+   L ++  ++P  + +  +I  Y R   L +A  
Sbjct: 342 YNSFIYGL--CKLGR--MSDAMQQLSDMLANN--LLPDVVSYNTLIYGYCRLGNLMKAFL 395

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIHGCV 163
           +FDE+ S  +  T+  +NTLL+     G+L+  ++L  +++ + ++PD  +Y IL++G  
Sbjct: 396 LFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSC 455

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE---ALKLKEDIMRVYNVK 220
               L  A + FDEM+   L+     + T I G   EL++ +   A  L+E+ M      
Sbjct: 456 KMGSLSMAQEFFDEMLHEGLELDSYAYATRIVG---ELKLGDTSRAFSLQEE-MLAKGFP 511

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD  ++  ++ GLC +G L  A  + ++MV D +  D   Y+S+I A  + GR  +   I
Sbjct: 512 PDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREI 571

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             EM  +G  P+ VTY  LI G   +   E AF    EM +KG   N I+YN ++ GLCK
Sbjct: 572 FYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCK 631



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 154/299 (51%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y+++I  L +   F++ + ++ ++      V        + G++ +  L E AL +
Sbjct: 268 NDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAE-ALSL 326

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
            +EM       TV  +N+ +      G++ D M++L  ++   + PD  SYN LI+G   
Sbjct: 327 QEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCR 386

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L  A+ +FDE+    L PT+VT+ TL+ GLC +  ++ A +LK +++    + PD  
Sbjct: 387 LGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMIN-EGIAPDIV 445

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  L+ G C +G LS+A    +EM+ + +E+D+  Y++ I    K G  +   ++ +EM
Sbjct: 446 TYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEM 505

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G  P+ + YN ++ G CK  + E A  +L +M   G   + ++Y  I+    ++G+
Sbjct: 506 LAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGR 564



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 151/295 (51%), Gaps = 5/295 (1%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR-LLERALQMFDEM 109
           DL+I    +  M ++   +  ++   +R+ P ++  CN I    R + L+ +A++++  M
Sbjct: 168 DLLIWVYSKKSMVEQCLSVFDKMIK-SRLSP-DVKNCNRILRILRDKDLMSKAVEVYRTM 225

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
             F ++ T+  +NTLL+     GK+ +  +L   M++   +P+  +YN+LI+G       
Sbjct: 226 GEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEF 285

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E A  +  EM+K  L+ +  T+  LIYG   +  + EAL L+E+ M +    P    + S
Sbjct: 286 EQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEE-MVLKGASPTVATYNS 344

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
            I GLC +G +S A+    +M+ + +  D   Y++LI    + G   +   +  E++   
Sbjct: 345 FIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIY 404

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             P  VTYN L+ G C++ + E A  +  EM ++G   + ++Y +++ G CK G 
Sbjct: 405 LFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGS 459



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 126/263 (47%), Gaps = 2/263 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P ++ +  +I    +    E+A  +  EM    ++++   +N L+      G L     L
Sbjct: 267 PNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSL 326

Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
            + M  K  SP   +YN  I+G     R+ DA +   +M+   L P +V++ TLIYG C 
Sbjct: 327 QEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCR 386

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
              + +A  L +++  +Y + P    + +L+ GLC  GEL +A  +K EM+ + I  D  
Sbjct: 387 LGNLMKAFLLFDELRSIY-LFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIV 445

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+ L++   K G  +       EM   G + +S  Y   I G  K  D   AF++ +EM
Sbjct: 446 TYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEM 505

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
             KG   + I YNV++ GLCK G
Sbjct: 506 LAKGFPPDLIIYNVVVDGLCKLG 528



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 132/278 (47%), Gaps = 23/278 (8%)

Query: 46  NLLHYDLIIT---KLGRAKM----FDEMQQILHQ-LKHDTRIVPKEIIFCNVIGFYGRAR 97
           +++ Y +++    K+G   M    FDEM   LH+ L+ D+      I+        G  +
Sbjct: 443 DIVTYTILVNGSCKMGSLSMAQEFFDEM---LHEGLELDSYAYATRIV--------GELK 491

Query: 98  L--LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACS 154
           L    RA  + +EM +      +  +N +++     G L+   EL Q M    V PD  +
Sbjct: 492 LGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVT 551

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           Y  +IH  + + RL    ++F EM+ + L P++VT+  LI+G   + R++ A     + M
Sbjct: 552 YTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSE-M 610

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           +   + P+   + SLI GLC V  +  A     EMV   I  +   Y+ LI+     G  
Sbjct: 611 QEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNW 670

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
            E  ++ K+M +RG +P+S T++AL+    K+   +A 
Sbjct: 671 QEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAV 708



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 19/225 (8%)

Query: 137 MKELFQIMEKYVSPDACS-YNILIHGCVVSR-----------------RLEDAWKVFDEM 178
           M+  + +ME+ ++ +     ++LI GCV S                   +E    VFD+M
Sbjct: 131 MRSAYWVMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKM 190

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
           +K RL P +     ++  L  +  + +A+++    M  + +KP    + +L+   C  G+
Sbjct: 191 IKSRLSPDVKNCNRILRILRDKDLMSKAVEVYR-TMGEFGIKPTIVTYNTLLDSYCKGGK 249

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           +   L +  EM R     +   Y+ LI+ L K G   +   ++ EM + G K ++ TYN 
Sbjct: 250 VQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNP 309

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           LI G+  +     A ++ +EM  KG      +YN  + GLCK G+
Sbjct: 310 LIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGR 354


>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
          Length = 581

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 140/294 (47%), Gaps = 36/294 (12%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           +++I+  L R        ++L +L+ D   +P  + F +VI  Y +A  LE A+ ++++M
Sbjct: 287 HNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDM 346

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
            +  +      +N L+N     G L    E++Q M +    PD  +++ LI G     +L
Sbjct: 347 VASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQL 406

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           +DA +++ +M + R+QP + TF  +I+ LC + R DEA++L  ++    N++PD      
Sbjct: 407 DDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNEL----NLRPD------ 456

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
                                    I   A IY+ +I  L K G+ +E   I K M+E+G
Sbjct: 457 -------------------------IAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKG 491

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           C+P+  TY  LI G+C +     A     EM + GC  + I+ N  +  L K G
Sbjct: 492 CRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAG 545



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 133/293 (45%), Gaps = 2/293 (0%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           II  L R+    +  Q+  Q+       P       ++     A LL+ +  +  + S F
Sbjct: 148 IIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEF 207

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDACSYNILIHGCVVSRRLED 170
             ++    +N L++  +  G++  +  LF+  I ++  SPD  S+N++I G     +++ 
Sbjct: 208 GCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFNVVIKGVCRVGQVQK 267

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           A ++ + M +    P  VT   ++ GLC    V    ++   + R     P+   F S+I
Sbjct: 268 ALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVI 327

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
            G C  G+L  A+ V  +MV   I  +   Y+ LI+   K G       + ++M    C 
Sbjct: 328 SGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCP 387

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           P+ VT+++LI G+C+    + A  I  +M     + N  ++++I+  LCK  +
Sbjct: 388 PDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNR 440



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 79/159 (49%), Gaps = 1/159 (0%)

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
           + P+  +   +I  LC   R  +AL+L + +   Y   PD +  + L+        L  +
Sbjct: 138 ITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDAS 197

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL-KEMKERGCKPNSVTYNALIS 301
             +  +       ++A  Y+ L+S+L   GR ++  A+  + +++R   P+  ++N +I 
Sbjct: 198 ATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFNVVIK 257

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           G C+    + A  +++ M + GC  + +++N+I+ GLC+
Sbjct: 258 GVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCR 296


>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 793

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 159/332 (47%), Gaps = 11/332 (3%)

Query: 13  RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ 72
           R Q D ++AL  F   +     +  HP+         Y  ++  L + K+    +++L  
Sbjct: 175 RSQADERVALNFFYWADRQWRYSH-HPVV--------YYTMLDVLSKTKLCQGARRVLRL 225

Query: 73  LKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132
           +       P E  F  V+  Y RA  L  AL++   M    V+ ++   NT +   +  G
Sbjct: 226 MTRRGIECPPEA-FGYVMVSYSRAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVLVKGG 284

Query: 133 KLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           KL++  +  + M+   + PD  +YN LI G     R+EDA ++   +  +   P  V++ 
Sbjct: 285 KLEKALKFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYY 344

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           T++  LC E +++E   L E ++   N+ PD   + +LI  L   G    AL   +E   
Sbjct: 345 TVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQD 404

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
               +D   YS+++ +  + GR +E  +++ +M  RGC P+ VTY A++ GFC+    + 
Sbjct: 405 KGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDE 464

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           A  IL +M   GCK N +SY  +L GLC  GK
Sbjct: 465 AKKILQQMYKHGCKPNTVSYTALLNGLCHSGK 496



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 139/295 (47%), Gaps = 2/295 (0%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  ++  L + K  +E++ ++ ++  ++ ++P ++ +  +I    +    + AL    E 
Sbjct: 343 YYTVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEA 402

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIHGCVVSRRL 168
                 +    ++ +++     G++D  K L   +  +  +PD  +Y  ++ G     R+
Sbjct: 403 QDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRI 462

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           ++A K+  +M K   +P  V++  L+ GLC   +  EA ++  ++   +   P+   + +
Sbjct: 463 DEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMI-NVSEEHWWTPNAITYGA 521

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           ++ GL   G+LS A  +  EMV           + LI +L +  +  E    L+E   +G
Sbjct: 522 VMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKG 581

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C  N V +  +I GFC+  D EAA ++LD+M   G   + ++Y  +   L K G+
Sbjct: 582 CAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTYTALFDALGKKGR 636



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 139/308 (45%), Gaps = 15/308 (4%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  + + Y  I+    +    DE + ++  + +     P  + +  ++  + R   ++
Sbjct: 405 KGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDM-YSRGCNPDVVTYTAIVDGFCRLGRID 463

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILI 159
            A ++  +M     +     +  LLN     GK    +E+  + E+ + +P+A +Y  ++
Sbjct: 464 EAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVM 523

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR---V 216
           HG     +L +A  +  EMV++   PT V    LI  LC   +V EA K  E+ +     
Sbjct: 524 HGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCA 583

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
            NV      F ++I G C +G++  AL V ++M       DA  Y++L  AL K GR +E
Sbjct: 584 INVVN----FTTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTYTALFDALGKKGRLDE 639

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS--YNVI 334
              ++ +M  +G  P  VTY ++I  + +    +    +L++M     K  P    YN +
Sbjct: 640 AAELIVKMLSKGLDPTPVTYRSVIHRYSQWGRVDDMLNLLEKM----LKRQPFRTVYNQV 695

Query: 335 LGGLCKDG 342
           +  LC  G
Sbjct: 696 IEKLCDFG 703



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 133/293 (45%), Gaps = 16/293 (5%)

Query: 56  KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ 115
           KL +A  F E  Q+       T I P  + + ++I  Y     +E AL++   + S    
Sbjct: 285 KLEKALKFLERMQV-------TGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCP 337

Query: 116 MTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-----PDACSYNILIHGCVVSRRLED 170
                + T++     C K  +++E+  +MEK V      PD  +YN LIH        +D
Sbjct: 338 PDKVSYYTVMG--FLC-KEKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHADD 394

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           A     E   +      V +  +++  C + R+DEA  L  D M      PD   + +++
Sbjct: 395 ALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVID-MYSRGCNPDVVTYTAIV 453

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
            G C +G +  A  + ++M +   + +   Y++L++ L  +G+  E   ++   +E    
Sbjct: 454 DGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWT 513

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           PN++TY A++ G  +E     A  +  EM +KG    P+  N+++  LC++ K
Sbjct: 514 PNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQK 566



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 3/123 (2%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PDA +Y  L        RL++A ++  +M+ + L PT VT+ ++I+      RVD+ L L
Sbjct: 619 PDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYSQWGRVDDMLNL 678

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            E +++    +P   V+  +I+ LC  G L  A  +  +++R   ++DA     L+ +  
Sbjct: 679 LEKMLKR---QPFRTVYNQVIEKLCDFGNLEEAEKLLGKVLRTASKVDANTCHVLMESYL 735

Query: 270 KAG 272
           K G
Sbjct: 736 KKG 738


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 145/273 (53%), Gaps = 4/273 (1%)

Query: 72  QLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP--KL 129
           Q+   T +    +++  +I    + + +  A +++ EM +  +   V  F+ L++   K 
Sbjct: 136 QMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKD 195

Query: 130 TCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
             GK   M  L  +M+K V P+  +Y  ++ G  +  ++  A  +F+ MV+  ++P +  
Sbjct: 196 RKGK-QAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWC 254

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           +  +I GLC + RVDEA+ L ++ M    + PD   +  LI GLC +G++S +L + +EM
Sbjct: 255 YNIIINGLCKKKRVDEAMNLFKE-MHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEM 313

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
                 +D   Y+SL+ AL K    ++   ++KE+K++G +PN  TY  LI G CK+   
Sbjct: 314 RSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRL 373

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           E A+ I  E+  +G      +YNV++ GLCK G
Sbjct: 374 EDAYVIFQEILTEGYHITVWTYNVMINGLCKKG 406



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 147/299 (49%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  II  L + K   +  ++  ++     I P    F  ++    + R  ++A+ +
Sbjct: 146 DVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKG-IFPNVYTFSILVDALCKDRKGKQAMNL 204

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
              M    V+  V  +  +++      ++++   +F +M ++ V P+   YNI+I+G   
Sbjct: 205 LAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCK 264

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            +R+++A  +F EM  +++ P +VT+  LI GLC   ++  +L+L ++ MR      D  
Sbjct: 265 KKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDE-MRSIGKTVDII 323

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SL+  LC    L  A+ + +E+    I+ +   Y++LI  L K GR  +   I +E+
Sbjct: 324 TYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEI 383

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G      TYN +I+G CK+  F+ A  +L  M D  C  + +SY  I+  L + G+
Sbjct: 384 LTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYALSEKGE 442



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 131/244 (53%), Gaps = 7/244 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL--DRMKELFQIMEKYVSPDACSYNILI 159
           A+QM  +     V   V  ++T+++  L  GK   D  +   +++ K + P+  +++IL+
Sbjct: 134 AMQMLRKTW---VNADVVMYSTIID-SLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILV 189

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
                 R+ + A  +   M+K+ ++P +VT+G ++ G CL  +V++AL +  ++M    V
Sbjct: 190 DALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNI-FNVMVQEGV 248

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +P+   +  +I GLC    +  A+ + +EM   KI  D   Y+ LI  L K G+ +    
Sbjct: 249 EPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLE 308

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           ++ EM+  G   + +TYN+L+   CK    + A T++ E+ D+G + N  +Y  ++ GLC
Sbjct: 309 LVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLC 368

Query: 340 KDGK 343
           KDG+
Sbjct: 369 KDGR 372



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 92/195 (47%), Gaps = 4/195 (2%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           +P    +N ++   V       A  +F ++    ++P++VT   L+   C    +     
Sbjct: 7   TPPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFS 66

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           +   I+++   +P+   F +LIKG+C  G+   AL   + +V    ++D   Y+ L++ L
Sbjct: 67  ILTKILKM-GYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGL 125

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K G   E  A ++ +++     + V Y+ +I   CK +    A+ +  EM  KG   N 
Sbjct: 126 CKMG---ETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNV 182

Query: 329 ISYNVILGGLCKDGK 343
            ++++++  LCKD K
Sbjct: 183 YTFSILVDALCKDRK 197


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 155/299 (51%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ ++ ++  L +A   +  +++  ++  +  + P  + +  ++  Y +   L  +L +
Sbjct: 222 NLVTFNSMVNGLCKAGRMEGARKVFDEMVREG-LAPDVVSYNTLLSGYCKVGCLHESLAV 280

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           F EM+   +   V  F +L++     G L++   L  Q+ E+ +  +  ++  LI G   
Sbjct: 281 FSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCK 340

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L+DA    +EM K  +QP++V +  LI G C   R+D A +L  + M    VKPD  
Sbjct: 341 KGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIRE-MEAKRVKPDVV 399

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++++I G C VG L  A  + ++M++  +  DA  YSSLI  L +  R N+   + + M
Sbjct: 400 TYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENM 459

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + G +P+  TY  LI G CKE + E A ++ DEM  KG   + ++Y+V++ GL K  +
Sbjct: 460 LQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSAR 518



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 145/276 (52%), Gaps = 17/276 (6%)

Query: 83  EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ 142
           E+ F  +I  + +   L+ AL   +EM    +Q +V  +N L+N     G++D  +EL +
Sbjct: 328 EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 387

Query: 143 IME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
            ME K V PD  +Y+ +I G      L+ A+++  +M+K+ + P  +T+ +LI GLC E 
Sbjct: 388 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEK 447

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
           R+++A +L E+++++  V+PD   + +LI G C  G +  AL + +EM+R  +  D   Y
Sbjct: 448 RLNDACELFENMLQL-GVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTY 506

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN---------------ALISGFCKE 306
           S LI+ L K+ R  E   +L ++      P+++ Y+               AL+ GFC +
Sbjct: 507 SVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMK 566

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
              + A  +   M D+  K +   Y++++ G C+ G
Sbjct: 567 GLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGG 602



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 147/297 (49%), Gaps = 9/297 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERALQMFD 107
           Y+ ++  L  A +    + +   L+H    V   +   N++      R RL E A+ +  
Sbjct: 121 YNAVLLALSDASLPSARRFLSSMLRHG---VAPNVYTYNILVRALCARGRL-EEAVGVVG 176

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM--EKYVSPDACSYNILIHGCVVS 165
           +M           +NTL+      G+LD  + +  +M  E    P+  ++N +++G   +
Sbjct: 177 DMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKA 236

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            R+E A KVFDEMV+  L P +V++ TL+ G C    + E+L +  + M    + PD   
Sbjct: 237 GRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSE-MTQRGLVPDVVT 295

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F SLI   C  G L  A+ +  +M    + M+   +++LI    K G  ++    ++EM+
Sbjct: 296 FTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMR 355

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + G +P+ V YNALI+G+CK    + A  ++ EM  K  K + ++Y+ I+ G CK G
Sbjct: 356 KCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVG 412



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 136/275 (49%), Gaps = 10/275 (3%)

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
           +F EM Q          +VP  + F ++I    +A  LE+A+ +  +M    ++M    F
Sbjct: 280 VFSEMTQ--------RGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTF 331

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
             L++     G LD      + M K  + P    YN LI+G     R++ A ++  EM  
Sbjct: 332 TALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEA 391

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           +R++P +VT+ T+I G C    +D A +L + +++   V PD   ++SLI+GLC    L+
Sbjct: 392 KRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLK-KGVLPDAITYSSLIRGLCEEKRLN 450

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  + E M++  ++ D   Y++LI    K G   +  ++  EM  +G  P+ VTY+ LI
Sbjct: 451 DACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLI 510

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +G  K    + A  +L ++  +    + I Y+ ++
Sbjct: 511 NGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM 545



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 36/229 (15%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           +P   +YN ++   +    L  A +    M++  + P + T+  L+  LC   R++EA+ 
Sbjct: 115 APSVPAYNAVLLA-LSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVG 173

Query: 209 LKEDIM----------------------------RVY-------NVKPDGQVFASLIKGL 233
           +  D+                             RV        N KP+   F S++ GL
Sbjct: 174 VVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGL 233

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           C  G +  A  V +EMVR+ +  D   Y++L+S   K G  +E  A+  EM +RG  P+ 
Sbjct: 234 CKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDV 293

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           VT+ +LI   CK  + E A  ++ +M ++G + N +++  ++ G CK G
Sbjct: 294 VTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKG 342



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 138/316 (43%), Gaps = 51/316 (16%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +  R N + +  +I    +    D+    + +++    I P  + +  +I  Y +   ++
Sbjct: 322 RGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMR-KCGIQPSVVCYNALINGYCKLGRMD 380

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILI 159
            A ++  EM +  V+  V  ++T+++     G LD   +L Q +++K V PDA +Y+ LI
Sbjct: 381 LARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 440

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR---- 215
            G    +RL DA ++F+ M++  +QP   T+ TLI G C E  V++AL L ++++R    
Sbjct: 441 RGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVL 500

Query: 216 ----VYNVKPDG-----------------------------------------QVFASLI 230
                Y+V  +G                                         +   +L+
Sbjct: 501 PDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALL 560

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
           KG C  G +  A  V + M+    ++D  +YS LI    + G   +  +  K+M   G  
Sbjct: 561 KGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFS 620

Query: 291 PNSVTYNALISGFCKE 306
           PNS +  +L+ G  +E
Sbjct: 621 PNSTSTISLVRGLFEE 636



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 117/255 (45%), Gaps = 21/255 (8%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           + EA  +KP   +++ Y  II+   +    D   Q L+Q      ++P  I + ++I   
Sbjct: 388 EMEAKRVKP---DVVTYSTIISGYCKVGNLDSAFQ-LNQKMLKKGVLPDAITYSSLIRGL 443

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDA 152
              + L  A ++F+ M    VQ     + TL++     G +++   L  +++ K V PD 
Sbjct: 444 CEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDV 503

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY---------------GL 197
            +Y++LI+G   S R ++A ++  ++      P  + +  L+                G 
Sbjct: 504 VTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGF 563

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C++  + EA K+ + ++   N K DG V++ LI G C  G +  AL   ++M+R     +
Sbjct: 564 CMKGLMKEADKVYQSMLD-RNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPN 622

Query: 258 AGIYSSLISALFKAG 272
           +    SL+  LF+ G
Sbjct: 623 STSTISLVRGLFEEG 637



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 30/63 (47%)

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L  M   G  PN  TYN L+   C     E A  ++ +M   GC  N ++YN ++   C+
Sbjct: 140 LSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCR 199

Query: 341 DGK 343
            G+
Sbjct: 200 AGE 202


>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
 gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 158/333 (47%), Gaps = 11/333 (3%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L RL  D   ALQ F   + +P+ +  HP          YD  I    R +    ++ ++
Sbjct: 74  LKRLWNDGPKALQFFNLLSHHPSYSH-HPSS--------YDHAIDISARLRDSPSLRSLV 124

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130
           ++++   R+ P    F  +   Y  A    RA+++F  M  F     ++ FNT+L+    
Sbjct: 125 YRMR-SARLGPTPKTFAIIAERYASAGKPHRAVKVFLSMHQFGCFQDLQSFNTILDVLCK 183

Query: 131 CGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
             +++    LF++ +     D  SYN++++G  + +R   A ++  EMVKR L P L ++
Sbjct: 184 SKRVEMAYNLFKVFKGKFRADCVSYNVMVNGWCLIKRTNKALEMLKEMVKRGLTPNLTSY 243

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
            T++ G     +++EA     + M+  + + D   + ++I G    GE+  A  V + MV
Sbjct: 244 NTMLKGYFRAGQINEAWDFFLE-MKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDTMV 302

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
           +  +      Y++ I  L K    +    I +EM  +G  PNS+TYN +I G C   + E
Sbjct: 303 KKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEME 362

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            A   +  M D GC+ N  +YN+++   C +G+
Sbjct: 363 RAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGE 395



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 130/269 (48%), Gaps = 14/269 (5%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           FR + + Y++++      K  ++  ++L ++     + P    +  ++  Y RA  +  A
Sbjct: 201 FRADCVSYNVMVNGWCLIKRTNKALEMLKEMVKRG-LTPNLTSYNTMLKGYFRAGQINEA 259

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG 161
              F EM   + ++ V  + T+++     G++ R +++F  M +K V P   +YN  I  
Sbjct: 260 WDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQV 319

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL----KLKEDIMRVY 217
                 +++A  +F+EMV +   P  +T+  +I GLC    ++ A+    ++K+D     
Sbjct: 320 LCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDD----- 374

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             +P+ Q +  +I+  C  GE+  AL + ++M       +   Y+ LISA+F   + ++ 
Sbjct: 375 GCEPNVQTYNLVIRYFCDEGEIDKALDLFQKMTSGDCLPNLDTYNILISAMFVRKKSDDL 434

Query: 278 PA---ILKEMKERGCKPNSVTYNALISGF 303
                +L EM +RG  P   T+N +++G 
Sbjct: 435 LVAGNLLIEMVDRGFVPRKFTFNRVLNGL 463



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 6/125 (4%)

Query: 80  VPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           VP  I +  VI G   R  + ERA++    M     +  V+ +N ++      G++D+  
Sbjct: 342 VPNSITYNLVIRGLCHRGEM-ERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDKAL 400

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLED---AWKVFDEMVKRRLQPTLVTFGTLI 194
           +LFQ M      P+  +YNILI    V ++ +D   A  +  EMV R   P   TF  ++
Sbjct: 401 DLFQKMTSGDCLPNLDTYNILISAMFVRKKSDDLLVAGNLLIEMVDRGFVPRKFTFNRVL 460

Query: 195 YGLCL 199
            GL L
Sbjct: 461 NGLLL 465


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 155/304 (50%), Gaps = 3/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +  R +++ ++ +I+   R+K  +E   +L  +    RI P    +  +I    +   +E
Sbjct: 255 RGLRPSVVSFNTLISGYCRSKNVEE-GFVLKSVMESERISPDVFTYSALINGLCKESRVE 313

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            A  +FDEM    +      F TL++ +   GK+D     F+IM ++ + PD  +YN LI
Sbjct: 314 EANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALI 373

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +G      L++A K+ +EM+    +P  +TF TL+ G C +  +D AL++K D M    +
Sbjct: 374 NGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIK-DRMVEEGI 432

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           + D   F +LI GLC  G +  A  + ++M+    + D   Y+ +I    K G       
Sbjct: 433 ELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAK 492

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +LKEM+  G  P  VTYNAL++GFCK+   + A  +L  M +     N I++N++L G C
Sbjct: 493 LLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILLDGHC 552

Query: 340 KDGK 343
           K G 
Sbjct: 553 KHGS 556



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 147/293 (50%), Gaps = 3/293 (1%)

Query: 52  LIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111
            II+K+G       +  ++  +    R     ++F  +I  Y  +  +E A+Q    +  
Sbjct: 124 FIISKMGHHSSTSLISSLIQTVPTHHRHNHSVLVFDALIIAYTDSEFIEDAIQCLRLVKK 183

Query: 112 FNVQMTVKFFNTLLNP--KLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
            N  + V   + LL    KL        +   ++++    P+   +NIL+HG      + 
Sbjct: 184 NNFSIPVCGCDYLLRRVMKLNQQPGHCWEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVM 243

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           +A  VFDE+ +R L+P++V+F TLI G C    V+E   LK  +M    + PD   +++L
Sbjct: 244 NARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKS-VMESERISPDVFTYSAL 302

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           I GLC    +  A G+ +EM    +  +   +++LI    K G+ +      + MK+RG 
Sbjct: 303 INGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGI 362

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +P+ +TYNALI+G C++ D + A  +L+EM   G K + I++  ++ G CKDG
Sbjct: 363 RPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDG 415



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 64/127 (50%)

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           Y   P+  +F  L+ G C +G++  A  V +E+ R  +      +++LIS   ++    E
Sbjct: 220 YGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEE 279

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +   M+     P+  TY+ALI+G CKE   E A  + DEM + G   N +++  ++ 
Sbjct: 280 GFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLID 339

Query: 337 GLCKDGK 343
           G CK GK
Sbjct: 340 GQCKHGK 346


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 154/320 (48%), Gaps = 19/320 (5%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  +   Y  +IT L +AK  ++   +  ++K    + P    +  +I  + +A L+E
Sbjct: 446 KGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKR-AGVNPDVYTYTILIDSFCKAGLIE 504

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
           +A   FDEM S      V  +  LL+  L   +L +  ++F  M +    P+A +Y+ LI
Sbjct: 505 QARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALI 564

Query: 160 HGCVVSRRLEDAWKVFDEMVKRR----------------LQPTLVTFGTLIYGLCLELRV 203
            G   +  ++ A +V+++++                   + P +VT+G LI GLC   +V
Sbjct: 565 DGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKV 624

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
            +A +L  D M     +P+  V+ +LI G C +G++  A  V   M +         Y+S
Sbjct: 625 SDAHELL-DAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTS 683

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LI  +FK GR +    +L EM    C PN VTY A+I G  K  + E A  +L  M +KG
Sbjct: 684 LIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKG 743

Query: 324 CKANPISYNVILGGLCKDGK 343
           C  N ++Y  ++ GL K GK
Sbjct: 744 CSPNVVTYTALIDGLGKTGK 763



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 134/298 (44%), Gaps = 9/298 (3%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           +I+ L  A +F+E    LH+++ ++  +P  + +  ++  + + +      ++ + M + 
Sbjct: 277 MISGLMEASLFNEAMSFLHRMRCNS-CIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTE 335

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDA-CSYNILIHGCVVSRRLEDA 171
                   FN+L++     G      +LF  M    SP    +YNI I        L +A
Sbjct: 336 GCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNA 395

Query: 172 W------KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
                  KV++EM+        V        LC   + ++A ++ +++MR   V PD   
Sbjct: 396 ELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFV-PDTST 454

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           +  +I  LC   ++  +  + +EM R  +  D   Y+ LI +  KAG   +  +   EM+
Sbjct: 455 YTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMR 514

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             GC PN VTY AL+  + K +    A  I   M D  C  N ++Y+ ++ GLCK G+
Sbjct: 515 SVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGE 572



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 4/187 (2%)

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N+L+  C      ++A +    +     +P+ VT+  L+  L    +V+   +++++ M 
Sbjct: 173 NVLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKE-MS 231

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
                 D        + LC VG  + AL + E   ++   +D  + + +IS L +A   N
Sbjct: 232 ASGFCMDRSTIGYFAQALCKVGRWADALNMLE---KEDFNLDTVLCTQMISGLMEASLFN 288

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E  + L  M+   C PN VTY  L+SGF K++ F     I++ M  +GC  NP  +N ++
Sbjct: 289 EAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLV 348

Query: 336 GGLCKDG 342
            G C  G
Sbjct: 349 HGYCNAG 355



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 131/297 (44%), Gaps = 8/297 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + YD +I    +    D  Q++  ++      +P    + ++I    +   L+ A+++
Sbjct: 642 NQIVYDALIDGFCKIGKIDNAQEVFLRMT-KCGYLPSVHTYTSLIDRMFKDGRLDLAMKV 700

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
             EM + +    V  +  +++     G++++   L  +ME K  SP+  +Y  LI G   
Sbjct: 701 LSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGK 760

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + + + + K+F +M  +   P  VT+  LI   C    +DEA  L  D M+  +     Q
Sbjct: 761 TGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEA-HLLLDEMKHTHWPKHLQ 819

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +   ++G     +   +LG+ EEM   +    A +Y  LI +  KAGR      + KE+
Sbjct: 820 GYHCAVQGFSK--KFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKEL 877

Query: 285 KERGCKPNSVT---YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            E     N  +   Y +LI   C     E AFT+  EM  KG   + I +  ++ GL
Sbjct: 878 VEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGL 934



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 110/254 (43%), Gaps = 12/254 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKY 147
           ++GF   AR  ER L+   E+   + ++  +  N L+      G  D  ++EL ++ +  
Sbjct: 143 ILGFEDPARTAERLLR---EIGEDDREVLRRLLNVLVRRCCRHGLWDEALEELGRLKDFG 199

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
             P A +YN L+     + ++E  ++V  EM          T G     LC   R  +AL
Sbjct: 200 YRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQALCKVGRWADAL 259

Query: 208 KL--KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
            +  KED    +N+  D  +   +I GL      + A+     M  +    +   Y +L+
Sbjct: 260 NMLEKED----FNL--DTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLL 313

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
           S   K  +      I+  M   GC PN   +N+L+ G+C   D+  A+ + + M   G  
Sbjct: 314 SGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSP 373

Query: 326 ANPISYNVILGGLC 339
              ++YN+ +G +C
Sbjct: 374 PGYVAYNIFIGSIC 387



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 119/270 (44%), Gaps = 8/270 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I ++ +    D   ++L ++ +D+   P  + +  +I    +   +E+AL +   M
Sbjct: 681 YTSLIDRMFKDGRLDLAMKVLSEMLNDS-CNPNVVTYTAMIDGLSKVGEIEKALNLLSLM 739

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
                   V  +  L++     GK D   +LF Q+  K  +P+  +Y +LI+ C  +  L
Sbjct: 740 EEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLL 799

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           ++A  + DEM        L  +   + G     +   +L L E+ M  +   P   V+  
Sbjct: 800 DEAHLLLDEMKHTHWPKHLQGYHCAVQGF--SKKFIASLGLLEE-MESHETVPIAPVYGM 856

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMD---AGIYSSLISALFKAGRKNEFPAILKEMK 285
           LI      G L  AL + +E+V     ++    G+Y+SLI AL  A +  E   +  EM 
Sbjct: 857 LIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMT 916

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            +G  P+ + + +L+ G  +   ++ A  +
Sbjct: 917 RKGIVPDLIVFVSLVKGLIEVNKWDEALQL 946



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 7/168 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y ++I     A + DE   +L ++KH       +   C V GF   ++    +L +
Sbjct: 782 NYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGF---SKKFIASLGL 838

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM----KELFQIMEKYVSPDACSYNILIHG 161
            +EM S         +  L++     G+L+      KEL ++           Y  LI  
Sbjct: 839 LEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQA 898

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
             ++ ++E+A+ ++ EM ++ + P L+ F +L+ GL    + DEAL+L
Sbjct: 899 LCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQL 946


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 166/369 (44%), Gaps = 76/369 (20%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y+++I  L +A   D+  ++LH++  D  + P  + F +++    +A   ERA  +
Sbjct: 260 DVFTYNILIDGLCKASKTDKASEMLHEMV-DRGVTPDTVTFNSIMDGLCKAGKFERAHSL 318

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHG 161
              M+  N + +   +NTL++       +DR K+L   ++++VS    PD  +Y+IL  G
Sbjct: 319 LAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDL---VDEFVSSGFVPDVVTYSILADG 375

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL---------------------- 199
                R+++A+++  EM  +   P LVT+ TLI GLC                       
Sbjct: 376 LCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPD 435

Query: 200 -------------ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
                        E R+D+ALK+ E +++     P    + +L++GLC  G +  A  + 
Sbjct: 436 VVTYTIIVDGLCKEGRLDKALKMVEGMLK-RGCTPSVITYTALMEGLCRTGRVDEAHHIF 494

Query: 247 EEMVRDKIEMDA--------------------------------GIYSSLISALFKAGRK 274
           +EMV      DA                                 +Y++L+    K GR 
Sbjct: 495 KEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRL 554

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +E P + ++M  RGC PN  TYN ++ G CK    + AF  L+ M   GC  + +SYN+I
Sbjct: 555 DEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNII 614

Query: 335 LGGLCKDGK 343
           + GL K  K
Sbjct: 615 IDGLFKASK 623



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 145/295 (49%), Gaps = 7/295 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y L+I  L +    D+   +L + K      P+  ++  +   + +   L+ AL++F  +
Sbjct: 163 YHLVIKSLCQMNQIDKAFTMLDKAKVRG-FKPEVSVYTILTRAFCKTGRLKDALEIFRNI 221

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
            S +       +N +++        D   E  + M E+ V+PD  +YNILI G   + + 
Sbjct: 222 PSPDAIA----YNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKT 277

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A ++  EMV R + P  VTF +++ GLC   + + A  L   +M   N +P    + +
Sbjct: 278 DKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLA-VMAERNCRPSCCTYNT 336

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI GLC    +  A  + +E V      D   YS L   L K GR +E   ++KEM  +G
Sbjct: 337 LISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKG 396

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C PN VTYN LI G CK    E A+ +L+ +   G   + ++Y +I+ GLCK+G+
Sbjct: 397 CTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGR 451



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 148/299 (49%), Gaps = 6/299 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ Y+ +I  L +A   ++  ++L  L   +  VP  + +  ++    +   L++AL+M
Sbjct: 400 NLVTYNTLIDGLCKASKTEKAYELLESLV-SSGFVPDVVTYTIIVDGLCKEGRLDKALKM 458

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            + M       +V  +  L+      G++D    +F +++ K  + DA +Y  L++G   
Sbjct: 459 VEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCK 518

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S R ++A KV D +   R  P +  +  L+ G C E R+DE   + ED M      P+ +
Sbjct: 519 SSRTKEAQKVVDGI---RGTPYIDVYNALMDGYCKEGRLDEIPNVFED-MACRGCVPNIK 574

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  ++ GLC  G++  A    E M       D   Y+ +I  LFKA +  E   +L +M
Sbjct: 575 TYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQM 634

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + G  P++VTYN L++ FCKEE F+ A  IL  M   G   + ++YN ++ GL +  +
Sbjct: 635 IQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNR 693



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 150/306 (49%), Gaps = 18/306 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y++II  L +A    E +Q+L Q+     I P  + +  ++  + +    + A+ +
Sbjct: 607 DVVSYNIIIDGLFKASKPKEARQVLDQMIQ-AGIPPDAVTYNTLMAQFCKEERFDDAVGI 665

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP----DACS-YNILIH 160
              M    V      +NTL++      + +R+ + +++M + +       AC+ YN +I 
Sbjct: 666 LKNMIKAGVDPDNVTYNTLIS---GLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIID 722

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL--KEDIMRVYN 218
                  L+ A  + D M    ++   VT+   I  LC E R+DEA  L  + D +R   
Sbjct: 723 RLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLR--- 779

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK-IEMDAGIYSSLISALFKAGRKNEF 277
              D   + ++I GLC   +L  A  +  EMV  K + + +  ++ LI A  K  R +E 
Sbjct: 780 ---DEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEA 836

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +L  M +RGC P+ +TYN +I+  CK +  + A+ + DEM  +G  A+ +SY V++ G
Sbjct: 837 LTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYG 896

Query: 338 LCKDGK 343
           LC  G+
Sbjct: 897 LCGQGR 902



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 119/276 (43%), Gaps = 34/276 (12%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           ++ A    + M S      V  +N +++      K    +++  Q+++  + PDA +YN 
Sbjct: 589 VDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNT 648

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L+       R +DA  +   M+K  + P  VT+ TLI GL    R+ +A +L  +++R  
Sbjct: 649 LMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNG 708

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            V      + ++I  LC  G L  AL + + M    +E +   Y+  I  L K GR +E 
Sbjct: 709 CVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEA 768

Query: 278 PAILKEMKE---------------------------------RGCKPNSVTYNALISGFC 304
            ++L EM                                   +G    S T+N LI  F 
Sbjct: 769 SSLLSEMDTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFT 828

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           K +  + A T+L  M  +GC  + I+YN+++  LCK
Sbjct: 829 KTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCK 864



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 108/241 (44%), Gaps = 12/241 (4%)

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMK--ELFQIMEKYVSPDACSYNILIHGCVVSRR 167
           S  N++  ++ +   L P +    L R+K  +   +   +       ++     C +   
Sbjct: 76  SGSNIRERLEQWRGTLQPAVVSRVLQRLKDPQTAIVFFVWAGDRGFKHSTFTRNCFLQTL 135

Query: 168 LEDAWK-----VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
           LE+        +F+ M+     P   T+  +I  LC   ++D+A  +  D  +V   KP+
Sbjct: 136 LENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTML-DKAKVRGFKPE 194

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
             V+  L +  C  G L  AL    E+ R+    DA  Y+++I    +    +     LK
Sbjct: 195 VSVYTILTRAFCKTGRLKDAL----EIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLK 250

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           EM ER   P+  TYN LI G CK    + A  +L EM D+G   + +++N I+ GLCK G
Sbjct: 251 EMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAG 310

Query: 343 K 343
           K
Sbjct: 311 K 311



 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 4/98 (4%)

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           E M+      D+  Y  +I +L +  + ++   +L + K RG KP    Y  L   FCK 
Sbjct: 149 ERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKT 208

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
              + A  I   +       + I+YN I+ G C+   C
Sbjct: 209 GRLKDALEIFRNIP----SPDAIAYNAIIHGHCRKNDC 242


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 150/297 (50%), Gaps = 8/297 (2%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           YN   Y L   KLGR  M D MQQ+   L ++  ++P  + +  +I  Y R   L +A  
Sbjct: 342 YNSFIYGL--CKLGR--MSDAMQQLSDMLANN--LLPDVVSYNTLIYGYCRLGNLMKAFL 395

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIHGCV 163
           +FDE+ S  +  T+  +NTLL+     G+L+  ++L  +++ + ++PD  +Y IL++G  
Sbjct: 396 LFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSC 455

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
               L  A + FDEM+   L+     + T I G         A  L+E+ M      PD 
Sbjct: 456 KMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEE-MLAKGFPPDL 514

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
            ++  ++ GLC +G L  A  + ++MV D +  D   Y+S+I A  + GR  +   I  E
Sbjct: 515 IIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYE 574

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           M  +G  P+ VTY  LI G   +   E AF    EM +KG   N I+YN ++ GLCK
Sbjct: 575 MLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCK 631



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 154/299 (51%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y+++I  L +   F++ + ++ ++      V        + G++ +  L E AL +
Sbjct: 268 NDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAE-ALSL 326

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
            +EM       TV  +N+ +      G++ D M++L  ++   + PD  SYN LI+G   
Sbjct: 327 QEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCR 386

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L  A+ +FDE+    L PT+VT+ TL+ GLC +  ++ A +LK +++    + PD  
Sbjct: 387 LGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMIN-EGIAPDIV 445

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  L+ G C +G LS+A    +EM+ + +E+D+  Y++ I    K G  +   ++ +EM
Sbjct: 446 TYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEM 505

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G  P+ + YN ++ G CK  + E A  +L +M   G   + ++Y  I+    ++G+
Sbjct: 506 LAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGR 564



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 151/294 (51%), Gaps = 5/294 (1%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR-LLERALQMFDEM 109
           DL+I    +  M ++   +  ++   +R+ P ++  CN I    R + L+ +A++++  M
Sbjct: 168 DLLIWVYSKKSMVEQCLSVFDKMI-KSRLSP-DVKNCNRILRILRDKDLMSKAVEVYRTM 225

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
             F ++ T+  +NTLL+     GK+ +  +L   M++   +P+  +YN+LI+G       
Sbjct: 226 GEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEF 285

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E A  +  EM+K  L+ +  T+  LIYG   +  + EAL L+E+ M +    P    + S
Sbjct: 286 EQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEE-MVLKGASPTVATYNS 344

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
            I GLC +G +S A+    +M+ + +  D   Y++LI    + G   +   +  E++   
Sbjct: 345 FIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIY 404

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             P  VTYN L+ G C++ + E A  +  EM ++G   + ++Y +++ G CK G
Sbjct: 405 LFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMG 458



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 126/263 (47%), Gaps = 2/263 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P ++ +  +I    +    E+A  +  EM    ++++   +N L+      G L     L
Sbjct: 267 PNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSL 326

Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
            + M  K  SP   +YN  I+G     R+ DA +   +M+   L P +V++ TLIYG C 
Sbjct: 327 QEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCR 386

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
              + +A  L +++  +Y + P    + +L+ GLC  GEL +A  +K EM+ + I  D  
Sbjct: 387 LGNLMKAFLLFDELRSIY-LFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIV 445

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+ L++   K G  +       EM   G + +S  Y   I G  K  D   AF++ +EM
Sbjct: 446 TYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEM 505

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
             KG   + I YNV++ GLCK G
Sbjct: 506 LAKGFPPDLIIYNVVVDGLCKLG 528



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 132/277 (47%), Gaps = 23/277 (8%)

Query: 46  NLLHYDLIIT---KLGRAKM----FDEMQQILHQ-LKHDTRIVPKEIIFCNVIGFYGRAR 97
           +++ Y +++    K+G   M    FDEM   LH+ L+ D+      I+        G  +
Sbjct: 443 DIVTYTILVNGSCKMGSLSMAQEFFDEM---LHEGLELDSYAYATRIV--------GELK 491

Query: 98  L--LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACS 154
           L    RA  + +EM +      +  +N +++     G L+   EL Q M    V PD  +
Sbjct: 492 LGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVT 551

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           Y  +IH  + + RL    ++F EM+ + L P++VT+  LI+G   + R++ A     + M
Sbjct: 552 YTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSE-M 610

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           +   + P+   + SLI GLC V  +  A     EMV   I  +   Y+ LI+     G  
Sbjct: 611 QEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNW 670

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
            E  ++ K+M +RG +P+S T++AL+    K+   +A
Sbjct: 671 QEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQA 707



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 19/225 (8%)

Query: 137 MKELFQIMEKYVSPDACS-YNILIHGCVVSR-----------------RLEDAWKVFDEM 178
           M+  + +ME+ ++ +     ++LI GCV S                   +E    VFD+M
Sbjct: 131 MRSAYWVMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKM 190

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
           +K RL P +     ++  L  +  + +A+++    M  + +KP    + +L+   C  G+
Sbjct: 191 IKSRLSPDVKNCNRILRILRDKDLMSKAVEVYR-TMGEFGIKPTIVTYNTLLDSYCKGGK 249

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           +   L +  EM R     +   Y+ LI+ L K G   +   ++ EM + G K ++ TYN 
Sbjct: 250 VQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNP 309

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           LI G+  +     A ++ +EM  KG      +YN  + GLCK G+
Sbjct: 310 LIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGR 354


>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 138/244 (56%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  +I  Y +   L+   ++   M +   Q  V  ++ L+N     GKLD   EL
Sbjct: 169 PSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANEL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++  + P+  ++  LIHG   + +++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +   L ++ M +  +KPD   + +LI G C  G+L +AL ++ +M+++ I +D  
Sbjct: 289 KGELKQVHDLIDE-MIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR ++   +L+EM   G KP++ TY  +I+ FCK+ D + A  +L EM
Sbjct: 348 AYTALISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREM 407

Query: 320 GDKG 323
              G
Sbjct: 408 QRDG 411



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 123/228 (53%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L+      G++   + +F  + K+ + P   S+N LI+G +    L++ +++ 
Sbjct: 135 SLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
             M     QP + T+  LI GLC E ++DEA +L  +++    + P+G  F +LI G C 
Sbjct: 195 SAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLD-NGLVPNGVTFTTLIHGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
             ++ LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM   G KP+ ++
Sbjct: 254 NEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKIS 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E A  + ++M  +  + + ++Y  ++  LC++G+
Sbjct: 314 YTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGR 361



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 1/178 (0%)

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
           R  +  W  + E+++     +L  F  L+   C E  +  A  + + I + + ++P    
Sbjct: 115 RYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITK-WGLRPSVVS 173

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F +LI G   +G+L     +K  M     + D   YS LI+ L K G+ +E   +  EM 
Sbjct: 174 FNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEML 233

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + G  PN VT+  LI G CK E  + A  I  +M  +G   + I+YN ++ GLCK G+
Sbjct: 234 DNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGE 291



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 111/246 (45%), Gaps = 36/246 (14%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I  L +    DE  ++ +++  D  +VP  + F  +I  + +   ++ A++++ +M
Sbjct: 209 YSILINGLCKEGKLDEANELFNEML-DNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQM 267

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
                                             + + +SPD  +YN LI+G      L+
Sbjct: 268 ----------------------------------LSQGLSPDLITYNTLIYGLCKKGELK 293

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
               + DEM+   L+P  +++ TLI G C E  ++ AL+L+  +++  +++ D   + +L
Sbjct: 294 QVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQ-ESIRLDDVAYTAL 352

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           I  LC  G  S A  +  EM+   ++ D G Y+ +I+   K         +L+EM+  G 
Sbjct: 353 ISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGP 412

Query: 290 KPNSVT 295
            P  VT
Sbjct: 413 LPGVVT 418


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 155/299 (51%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ ++ ++  L +A   +  +++  ++  +  + P  + +  ++  Y +   L  +L +
Sbjct: 80  NLVTFNSMVNGLCKAGRMEGARKVFDEMVREG-LAPDVVSYNTLLSGYCKVGCLHESLAV 138

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           F EM+   +   V  F +L++     G L++   L  Q+ E+ +  +  ++  LI G   
Sbjct: 139 FSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCK 198

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L+DA    +EM K  +QP++V +  LI G C   R+D A +L  + M    VKPD  
Sbjct: 199 KGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIRE-MEAKRVKPDVV 257

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++++I G C VG L  A  + ++M++  +  DA  YSSLI  L +  R N+   + + M
Sbjct: 258 TYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENM 317

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + G +P+  TY  LI G CKE + E A ++ DEM  KG   + ++Y+V++ GL K  +
Sbjct: 318 LQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSAR 376



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 145/276 (52%), Gaps = 17/276 (6%)

Query: 83  EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ 142
           E+ F  +I  + +   L+ AL   +EM    +Q +V  +N L+N     G++D  +EL +
Sbjct: 186 EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 245

Query: 143 IME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
            ME K V PD  +Y+ +I G      L+ A+++  +M+K+ + P  +T+ +LI GLC E 
Sbjct: 246 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEK 305

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
           R+++A +L E+++++  V+PD   + +LI G C  G +  AL + +EM+R  +  D   Y
Sbjct: 306 RLNDACELFENMLQL-GVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTY 364

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN---------------ALISGFCKE 306
           S LI+ L K+ R  E   +L ++      P+++ Y+               AL+ GFC +
Sbjct: 365 SVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMK 424

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
              + A  +   M D+  K +   Y++++ G C+ G
Sbjct: 425 GLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGG 460



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 128/246 (52%), Gaps = 3/246 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM--EKYVSPDACSYN 156
           LE A+ +  +M           +NTL+      G+LD  + +  +M  E    P+  ++N
Sbjct: 26  LEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFN 85

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            +++G   + R+E A KVFDEMV+  L P +V++ TL+ G C    + E+L +  + M  
Sbjct: 86  SMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSE-MTQ 144

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             + PD   F SLI   C  G L  A+ +  +M    + M+   +++LI    K G  ++
Sbjct: 145 RGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDD 204

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
               ++EM++ G +P+ V YNALI+G+CK    + A  ++ EM  K  K + ++Y+ I+ 
Sbjct: 205 ALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIIS 264

Query: 337 GLCKDG 342
           G CK G
Sbjct: 265 GYCKVG 270



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 103/195 (52%)

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           V+P+  +YNIL+       RLE+A  V  +M      P  VT+ TL+   C    +D A 
Sbjct: 6   VAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAE 65

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           ++   +    N KP+   F S++ GLC  G +  A  V +EMVR+ +  D   Y++L+S 
Sbjct: 66  RVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSG 125

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
             K G  +E  A+  EM +RG  P+ VT+ +LI   CK  + E A  ++ +M ++G + N
Sbjct: 126 YCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 185

Query: 328 PISYNVILGGLCKDG 342
            +++  ++ G CK G
Sbjct: 186 EVTFTALIDGFCKKG 200



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 144/291 (49%), Gaps = 3/291 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +++   +     E   +  ++     +VP  + F ++I    +A  LE+A+ +
Sbjct: 115 DVVSYNTLLSGYCKVGCLHESLAVFSEMTQRG-LVPDVVTFTSLIHATCKAGNLEQAVAL 173

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
             +M    ++M    F  L++     G LD      + M K  + P    YN LI+G   
Sbjct: 174 VAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCK 233

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R++ A ++  EM  +R++P +VT+ T+I G C    +D A +L + +++   V PD  
Sbjct: 234 LGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLK-KGVLPDAI 292

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++SLI+GLC    L+ A  + E M++  ++ D   Y++LI    K G   +  ++  EM
Sbjct: 293 TYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEM 352

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
             +G  P+ VTY+ LI+G  K    + A  +L ++  +    + I Y+ ++
Sbjct: 353 IRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM 403



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 138/316 (43%), Gaps = 51/316 (16%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +  R N + +  +I    +    D+    + +++    I P  + +  +I  Y +   ++
Sbjct: 180 RGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRK-CGIQPSVVCYNALINGYCKLGRMD 238

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILI 159
            A ++  EM +  V+  V  ++T+++     G LD   +L Q +++K V PDA +Y+ LI
Sbjct: 239 LARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 298

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR---- 215
            G    +RL DA ++F+ M++  +QP   T+ TLI G C E  V++AL L ++++R    
Sbjct: 299 RGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVL 358

Query: 216 ----VYNVKPDG-----------------------------------------QVFASLI 230
                Y+V  +G                                         +   +L+
Sbjct: 359 PDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALL 418

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
           KG C  G +  A  V + M+    ++D  +YS LI    + G   +  +  K+M   G  
Sbjct: 419 KGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFS 478

Query: 291 PNSVTYNALISGFCKE 306
           PNS +  +L+ G  +E
Sbjct: 479 PNSTSTISLVRGLFEE 494



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 1/127 (0%)

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           + V P+   +  L++ LCA G L  A+GV  +M       +A  Y++L++A  +AG  + 
Sbjct: 4   HGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDG 63

Query: 277 FPAILKEMKERG-CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
              ++  M+E G  KPN VT+N++++G CK    E A  + DEM  +G   + +SYN +L
Sbjct: 64  AERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLL 123

Query: 336 GGLCKDG 342
            G CK G
Sbjct: 124 SGYCKVG 130



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 57/96 (59%), Gaps = 1/96 (1%)

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           MVR  +  +   Y+ L+ AL   GR  E   ++ +M+  GC PN+VTYN L++ FC+  +
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 309 FEAAFTILDEMGDKG-CKANPISYNVILGGLCKDGK 343
            + A  ++  M ++G  K N +++N ++ GLCK G+
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGR 96



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 138/308 (44%), Gaps = 25/308 (8%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           + EA  +KP   +++ Y  II+   +    D   Q L+Q      ++P  I + ++I   
Sbjct: 246 EMEAKRVKP---DVVTYSTIISGYCKVGNLDSAFQ-LNQKMLKKGVLPDAITYSSLIRGL 301

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDA 152
              + L  A ++F+ M    VQ     + TL++     G +++   L  +++ K V PD 
Sbjct: 302 CEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDV 361

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY---------------GL 197
            +Y++LI+G   S R ++A ++  ++      P  + +  L+                G 
Sbjct: 362 VTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGF 421

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C++  + EA K+ + ++   N K DG V++ LI G C  G +  AL   ++M+R     +
Sbjct: 422 CMKGLMKEADKVYQSMLD-RNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPN 480

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTI 315
           +    SL+  LF+ G   E    ++++    C P  ++    ALI    KE + +A   +
Sbjct: 481 STSTISLVRGLFEEGMVVEADNAIQDLLT--CCPLADAEASKALIDLNRKEGNVDALIDV 538

Query: 316 LDEMGDKG 323
           L  M   G
Sbjct: 539 LCGMARDG 546


>gi|224084127|ref|XP_002307219.1| predicted protein [Populus trichocarpa]
 gi|222856668|gb|EEE94215.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 177/380 (46%), Gaps = 48/380 (12%)

Query: 2   PTSSIRLACLPRL------QKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIIT 55
           PT S+ +    R+      QK    ALQ F+  +  PN T +            Y  +I 
Sbjct: 6   PTPSLAVPTHERIVHLILDQKSAPQALQTFEWASKLPNFTHSQST---------YRALIH 56

Query: 56  KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ 115
           KL   + F  +Q +L ++     + P E IF  +I   GRAR++   +++ D ++ +   
Sbjct: 57  KLLTFRRFHTVQHLLDEMPKSIGLPPDESIFLTIIRGLGRARMIRDVIKVLDLVTRYGKN 116

Query: 116 MTVKFFNTLLNPKLTCGKLDRMKELF--QIMEKYVSPDACSYNILIHGCVVSRRLEDAWK 173
            ++K FN++L+  L    +D  ++ +  ++M   +  D  +Y IL+ G  ++ R+ + +K
Sbjct: 117 PSLKIFNSILDV-LVKEDIDLARKFYRKKMMGAGIQGDDYTYGILMKGLCLTNRIGEGFK 175

Query: 174 VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR----VYNV---------- 219
           +   +  R L+P +V + TL++ LC   +V  A  L  +I       +NV          
Sbjct: 176 LLQVIKSRGLKPNVVIYNTLLHALCNNGKVGRARSLMNEIKEPNDVTFNVLICGYCKEDN 235

Query: 220 ----------------KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
                            PD      +++ LC VG ++ A+ + E +      +D   +++
Sbjct: 236 FVQALVLLEKSFSLGFVPDVVTVTKVVEILCNVGRVTEAVEILERVESKGGVVDVVAHNT 295

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LI    K G+      +LKEM+ +GC PN+ TYNALISGFC+    E+A  + ++M   G
Sbjct: 296 LIKGFCKFGKVKLGHGLLKEMERKGCLPNADTYNALISGFCESGMLESALDMFNDMKTDG 355

Query: 324 CKANPISYNVILGGLCKDGK 343
              N ++++ ++ GL   G+
Sbjct: 356 INCNFVTFDTLIKGLFSRGR 375



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 124/263 (47%), Gaps = 14/263 (5%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           +P    +  +I  +  + +LE AL MF++M +  +      F+TL+    + G+ +   +
Sbjct: 322 LPNADTYNALISGFCESGMLESALDMFNDMKTDGINCNFVTFDTLIKGLFSRGRTEDGFK 381

Query: 140 LFQIMEKY-------VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           + ++ME+        +SP    YN +++G      L +A +   +M    L P  V    
Sbjct: 382 ILELMEETRGVCGGSISP----YNSVLYGLYRKNMLNEALEFLMKM--ENLFPRAVDRSL 435

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
            I G C E  + EA ++  D M      P   V+  LI G C  G +  AL +  EMV  
Sbjct: 436 RILGFCEEGAIQEAKRVY-DQMNNEGGIPSALVYDCLIHGFCQEGCVREALELMNEMVFL 494

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
                A  +++LIS   + G+      +L++M  RGC P++ +Y+ LI   C+++ F+ A
Sbjct: 495 GYFPVASTFNALISGFCRLGKDGSALKLLEDMVGRGCVPDTGSYSPLIDALCRKKSFQKA 554

Query: 313 FTILDEMGDKGCKANPISYNVIL 335
            ++L +M + G   + + +N + 
Sbjct: 555 ASLLLQMVENGITPDYLIWNSLF 577



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 125/291 (42%), Gaps = 42/291 (14%)

Query: 85  IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM 144
           I CNV    GR   +  A+++ + + S    + V   NTL+      GK+     L + M
Sbjct: 264 ILCNV----GR---VTEAVEILERVESKGGVVDVVAHNTLIKGFCKFGKVKLGHGLLKEM 316

Query: 145 E-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
           E K   P+A +YN LI G   S  LE A  +F++M    +    VTF TLI GL    R 
Sbjct: 317 ERKGCLPNADTYNALISGFCESGMLESALDMFNDMKTDGINCNFVTFDTLIKGLFSRGRT 376

Query: 204 DEALKLKE----------------------------------DIMRVYNVKPDGQVFASL 229
           ++  K+ E                                   +M++ N+ P     +  
Sbjct: 377 EDGFKILELMEETRGVCGGSISPYNSVLYGLYRKNMLNEALEFLMKMENLFPRAVDRSLR 436

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           I G C  G +  A  V ++M  +     A +Y  LI    + G   E   ++ EM   G 
Sbjct: 437 ILGFCEEGAIQEAKRVYDQMNNEGGIPSALVYDCLIHGFCQEGCVREALELMNEMVFLGY 496

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            P + T+NALISGFC+     +A  +L++M  +GC  +  SY+ ++  LC+
Sbjct: 497 FPVASTFNALISGFCRLGKDGSALKLLEDMVGRGCVPDTGSYSPLIDALCR 547



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 1/119 (0%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P A  Y+ LIHG      + +A ++ +EMV     P   TF  LI G C   +   ALKL
Sbjct: 463 PSALVYDCLIHGFCQEGCVREALELMNEMVFLGYFPVASTFNALISGFCRLGKDGSALKL 522

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
            ED++    V PD   ++ LI  LC       A  +  +MV + I  D  I++SL   L
Sbjct: 523 LEDMVGRGCV-PDTGSYSPLIDALCRKKSFQKAASLLLQMVENGITPDYLIWNSLFHCL 580


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 141/258 (54%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++  Y R   L+   ++   M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 234

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 294

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M V  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 295 KGDLKQAHHLIDE-MSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEV 353

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP++ TY  +I+ FCK+ D      +L EM
Sbjct: 354 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEM 413

Query: 320 GDKGCKANPISYNVILGG 337
              G   + ++YNV++ G
Sbjct: 414 QRDGHVPSVVTYNVLMNG 431



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 131/239 (54%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   SYN L++G + 
Sbjct: 130 YEEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++ +++   M+   +QP + T+  LI GLC E ++D+A +L ++ M V  + P+G 
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDE-MLVKGLVPNGV 248

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 308

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G KP+ +TY  LI G CKE D ++AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 309 SVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGR 367



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 131/244 (53%), Gaps = 6/244 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS--AMLASGVQPDVYTYSVL 218

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G     +++DA ++FDEM+ + L P  VTF TLI G C   RVD A+++ + ++   +
Sbjct: 219 INGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QS 277

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   + +LI GLC  G+L  A  + +EM    ++ D   Y++LI    K G  +   
Sbjct: 278 LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAF 337

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
              K M +   + + V Y ALISG C+E     A  +L EM   G K +  +Y +I+   
Sbjct: 338 EHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEF 397

Query: 339 CKDG 342
           CK G
Sbjct: 398 CKKG 401



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G      ++   + + G +P+ V+YN L+
Sbjct: 125 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 185 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 227


>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 532

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 164/347 (47%), Gaps = 7/347 (2%)

Query: 3   TSSIRLACLPRLQKDPKLALQLFKNPNPNPN-DTEAHPLKPFRYNLLH----YDLIITKL 57
           + +  L  L     DP +A ++ K  N NP    +        ++L+H    Y+L+I  L
Sbjct: 44  SDATSLGYLSEKLNDPLVAFEVIKRLNNNPQVGLKFMEFCRLNFSLIHCFSTYELLIRSL 103

Query: 58  GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT 117
            +  + D ++ ++  ++ D  ++   ++   V  F  +A   + A ++  E+     +++
Sbjct: 104 CQMGLHDLVEMVIGYMRSDGHLIDSRVLGFLVTSF-AQAGKFDLAKKLIIEVQGEEARIS 162

Query: 118 VKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILIHGCVVSRRLEDAWKVFD 176
              +N LLN  +  GK+     LF+    + SP +  ++NILI G      +E  +++F+
Sbjct: 163 SFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFN 222

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
            M      P +VT+ TLI GLC    +D A  L +++    +  PD   + S+I G   +
Sbjct: 223 AMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKL 282

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           G+L  A  + EEM+R  IE     ++ LI    K G      A+ ++M    C P+ VT+
Sbjct: 283 GKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTF 342

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +LI G+C+  D      + D M  +    N  +Y+VI+  LCKD +
Sbjct: 343 TSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNR 389



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 132/253 (52%), Gaps = 7/253 (2%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY--VSPDA 152
           R   +E+  ++F+ M SF     V  +NTL++      +LDR  +L + ++     SPD 
Sbjct: 210 RVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDV 269

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI--YGLCLELRVDEALKLK 210
            +Y  +I G     +LE A  +F+EM++  ++PT+VTF  LI  +G    +   EA+  K
Sbjct: 270 MTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEK 329

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
              M  Y+  PD   F SLI G C  G++ L L V + M    +  +   YS +I+AL K
Sbjct: 330 ---MASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCK 386

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
             R +E   +L+++K     P    YN +I GFCK  + + A  I+ EM +K C+ + ++
Sbjct: 387 DNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVT 446

Query: 331 YNVILGGLCKDGK 343
           + +++ G C  G+
Sbjct: 447 FTILIIGHCMKGR 459



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 126/272 (46%), Gaps = 2/272 (0%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I+ L +A   D    +L +++      P  + + ++I  + +   LE A  +
Sbjct: 232 DVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVL 291

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHGCVV 164
           F+EM    ++ TV  FN L++     G +   + + + M  Y   PD  ++  LI G   
Sbjct: 292 FEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCR 351

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  +    KV+D M  R + P + T+  +I  LC + R+ EA  L    ++  +V P   
Sbjct: 352 TGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQ-LKCSDVFPKPF 410

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++  +I G C  G +  A  +  EM   +   D   ++ LI      GR  E   I K+M
Sbjct: 411 IYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKM 470

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
              GC P+++T ++L++   K      AF I+
Sbjct: 471 LAIGCAPDNITISSLVACLLKAGKPSEAFHIV 502


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 151/301 (50%), Gaps = 3/301 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  R + + Y  +I  LGR    DE  ++  Q+  D   +P  +++ ++I  + +    E
Sbjct: 473 KTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQM-LDANQIPNAVVYTSLIRNFFKCGRKE 531

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
              ++++EM        +   NT ++     G++++ + LFQ ++     PDA SY ILI
Sbjct: 532 DGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILI 591

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           HG V +    +A+++F  M ++        + T+I G C   +V++A +L E+ M+    
Sbjct: 592 HGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEE-MKTKGH 650

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +P    + S+I GL  +  L  A  + EE     IE++  IYSSLI    K GR +E   
Sbjct: 651 EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYL 710

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           I++E+ ++G  PN  T+N L+    K E+   A      M D  C  N I+Y++++ GLC
Sbjct: 711 IMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLC 770

Query: 340 K 340
           K
Sbjct: 771 K 771



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 165/382 (43%), Gaps = 77/382 (20%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           ++ +++ L+P   +++ Y++ I   G+A   D   +  H++K +  +V  ++ + ++IG 
Sbjct: 259 DEMKSNSLEP---DVVLYNVCIDCFGKAGKVDMAWKXFHEMKANG-LVLDDVTYTSMIGV 314

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKF-FNTLL-------------------------- 125
             +A  L  A+++F+ M   N Q+   + +NT++                          
Sbjct: 315 LCKADRLNEAVELFEHMDQ-NKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIP 373

Query: 126 -----NPKLTC----GKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFD 176
                N  L+C    G++D   + F+ M+K   P+  +YNI+I     + +LE A  V D
Sbjct: 374 SVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRD 433

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
            M    L P ++T   ++  LC   R+D+A  + E +      +PD   + SLI+GL   
Sbjct: 434 AMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDH-KTCRPDAVTYCSLIEGLGRH 492

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK------ 290
           G +  A  + E+M+      +A +Y+SLI   FK GRK +   I  EM   GC       
Sbjct: 493 GRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLL 552

Query: 291 -----------------------------PNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
                                        P++ +Y  LI G  K      A+ +   M +
Sbjct: 553 NTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKE 612

Query: 322 KGCKANPISYNVILGGLCKDGK 343
           +GC  +  +YN ++ G CK GK
Sbjct: 613 QGCVLDTRAYNTVIDGFCKSGK 634



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 147/333 (44%), Gaps = 37/333 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ I++ LGR    DE  +   ++K D   +P    +  +I    +A  LE AL +
Sbjct: 374 SVVSYNCILSCLGRKGQVDEALKKFEEMKKDA--IPNLSTYNIMIDMLCKAGKLETALVV 431

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            D M    +   V   N +++      +LD    +F+ ++ K   PDA +Y  LI G   
Sbjct: 432 RDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGR 491

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV-------- 216
             R+++A+K++++M+     P  V + +LI       R ++  K+  +++R+        
Sbjct: 492 HGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLL 551

Query: 217 --------------------------YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
                                         PD + +  LI GL   G    A  +   M 
Sbjct: 552 LNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMK 611

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
                +D   Y+++I    K+G+ N+   +L+EMK +G +P  VTY ++I G  K +  +
Sbjct: 612 EQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLD 671

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            A+ + +E   KG + N + Y+ ++ G  K G+
Sbjct: 672 EAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGR 704



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 142/295 (48%), Gaps = 9/295 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I  L +A    E  ++ + +K    ++     +  VI  + ++  + +A Q+ +EM
Sbjct: 587 YTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRA-YNTVIDGFCKSGKVNKAYQLLEEM 645

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME----KYVSPDACSYNILIHGCVVS 165
            +   + TV  + ++++      K+DR+ E + + E    K +  +   Y+ LI G    
Sbjct: 646 KTKGHEPTVVTYGSVIDG---LAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKV 702

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            R+++A+ + +E++++ L P + T+  L+  L     + EAL   +  M+     P+   
Sbjct: 703 GRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQS-MKDLKCTPNYIT 761

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           ++ LI GLC + + + A    +EM +   + +   Y+++IS L KAG   E   + ++ K
Sbjct: 762 YSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFK 821

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           E+G   +S  YNA+I G         A+ + +E   KGC     +  V+L  L K
Sbjct: 822 EKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHK 876



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 129/270 (47%), Gaps = 9/270 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I    ++   ++  Q+L ++K      P  + + +VI    +   L+ A  +F+E 
Sbjct: 622 YNTVIDGFCKSGKVNKAYQLLEEMKTKGH-EPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 680

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME----KYVSPDACSYNILIHGCVVS 165
            S  +++ V  +++L++     GK+ R+ E + IME    K ++P+  ++N L+   V +
Sbjct: 681 KSKGIELNVVIYSSLIDG---FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKA 737

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             + +A   F  M   +  P  +T+  LI+GLC   + ++A    ++ M+    KP+   
Sbjct: 738 EEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQE-MQKQGFKPNVFT 796

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + ++I GL   G +  A  + E+        D+ IY+++I  L  A R ++   + +E +
Sbjct: 797 YTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEAR 856

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            +GC   + T   L+    K E  E A  +
Sbjct: 857 LKGCSIYTKTCVVLLDSLHKAECIEQAAIV 886



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 5/226 (2%)

Query: 122 NTLLNPKLTCGKLDRMKELF---QIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           NT +   L+  K  +++E F   Q M K    P   +Y  LI     SR  +    +F +
Sbjct: 166 NTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQ 225

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M +      +  F TLI     E RVD AL L ++ M+  +++PD  ++   I      G
Sbjct: 226 MQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDE-MKSNSLEPDVVLYNVCIDCFGKAG 284

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           ++ +A     EM  + + +D   Y+S+I  L KA R NE   + + M +    P +  YN
Sbjct: 285 KVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYN 344

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +I G+     FE A+++L+    KGC  + +SYN IL  L + G+
Sbjct: 345 TMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQ 390



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 132/295 (44%), Gaps = 4/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ ++  + R + F+ ++QIL ++       P       ++  + ++R L  A      M
Sbjct: 133 YNSLLMVMARTRKFNCLEQILEEMSI-AGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTM 191

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
                +     +  L+    T    D M  LFQ M++   + +   +  LI       R+
Sbjct: 192 RKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRV 251

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A  + DEM    L+P +V +   I       +VD A K   + M+   +  D   + S
Sbjct: 252 DAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHE-MKANGLVLDDVTYTS 310

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I  LC    L+ A+ + E M ++K    A  Y+++I     AG+  +  ++L+  + +G
Sbjct: 311 MIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKG 370

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C P+ V+YN ++S   ++   + A    +EM  K    N  +YN+++  LCK GK
Sbjct: 371 CIPSVVSYNCILSCLGRKGQVDEALKKFEEM-KKDAIPNLSTYNIMIDMLCKAGK 424


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 153/304 (50%), Gaps = 11/304 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++  +++I      ++ D+  ++ H+++ +  +VP+   +  +I  Y +   L++A Q+
Sbjct: 69  SVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQL 128

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-----EKYVSPDACSYNILIH 160
            +E S  +  +       + +      K  R+ E +Q++     +K   PD  ++N++IH
Sbjct: 129 LEESSCCSSDVI-----AITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIH 183

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-KEDIMRVYNV 219
           G   + R+ +A+++ + +V     P  VT+ TLI G C    + EAL+L K    R ++ 
Sbjct: 184 GFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHA 243

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +P+   F +LI GLC    L  A  + ++M    +  D   Y++L+  L K GR +E   
Sbjct: 244 EPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSR 303

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + +EM   GC P+ VTY  L+   CK    + A  ++  M  KG   +  +Y V+L GL 
Sbjct: 304 VFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLF 363

Query: 340 KDGK 343
           ++GK
Sbjct: 364 ENGK 367



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 140/301 (46%), Gaps = 12/301 (3%)

Query: 52  LIITKLGR----AKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERALQM 105
           + IT + R    A+  DE  Q+L  +       P +I+  NVI  GF    R+ E A +M
Sbjct: 140 IAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKP-DIVAWNVIIHGFCKAGRVRE-AYEM 197

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM---EKYVSPDACSYNILIHGC 162
            + + S         + TL++     G L    +LF+++   + +  P+  ++N LI G 
Sbjct: 198 LETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGL 257

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             + RLE A+++  +M  R L+    T+ TL+ GLC + R  E  ++ E+++R     P 
Sbjct: 258 CKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLR-EGCNPS 316

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + +L+   C  G L  A  V   MV   I  D   Y+ L+  LF+ G+        +
Sbjct: 317 VVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFE 376

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++    C P +V Y+AL+ G CK    + A     EM D+    +P +  +++  LCK G
Sbjct: 377 KILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRG 436

Query: 343 K 343
           +
Sbjct: 437 R 437



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 110/224 (49%), Gaps = 7/224 (3%)

Query: 121 FNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           F+ L+      G+L    E + Q++E++  P+    N+L+     + +++ A  +F  + 
Sbjct: 6   FSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAIFRGI- 64

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
             +  P+++T   LI G C    +D+AL+L  ++ + + + P+   + ++IK  C +  L
Sbjct: 65  --QCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRL 122

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE-RGCKPNSVTYNA 298
             A  + EE        D    +S+     KA R +E   +L +M E +  KP+ V +N 
Sbjct: 123 DQARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNV 180

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +I GFCK      A+ +L+ +   GC  N ++Y  ++ G CK G
Sbjct: 181 IIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSG 224



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 2/165 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +  R +   Y  ++  L +     E+ ++  ++  +    P  + +  ++  + +A  L+
Sbjct: 276 RDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREG-CNPSVVTYTTLVHAHCKAGSLQ 334

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILI 159
            A Q+   M +  +   V  +  LL      GK+    E F+ I+ +   P A  Y+ L+
Sbjct: 335 DAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALV 394

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
            GC  +  +++A K + EM+ RRL P   T   L+  LC   R D
Sbjct: 395 RGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           PN  T++ LI+G CK      A    ++M ++ C  N    N++L  LC+ GK
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGK 53


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 151/301 (50%), Gaps = 3/301 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  R + + Y  +I  LGR    DE  ++  Q+  D   +P  +++ ++I  + +    E
Sbjct: 473 KTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQM-LDANQIPNAVVYTSLIRNFFKCGRKE 531

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
              ++++EM        +   NT ++     G++++ + LFQ ++     PDA SY ILI
Sbjct: 532 DGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILI 591

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           HG V +    +A+++F  M ++        + T+I G C   +V++A +L E+ M+    
Sbjct: 592 HGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEE-MKTKGH 650

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +P    + S+I GL  +  L  A  + EE     IE++  IYSSLI    K GR +E   
Sbjct: 651 EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYL 710

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           I++E+ ++G  PN  T+N L+    K E+   A      M D  C  N I+Y++++ GLC
Sbjct: 711 IMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLC 770

Query: 340 K 340
           K
Sbjct: 771 K 771



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 165/382 (43%), Gaps = 77/382 (20%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           ++ +++ L+P   +++ Y++ I   G+A   D   +  H++K +  +V  ++ + ++IG 
Sbjct: 259 DEMKSNSLEP---DVVLYNVCIDCFGKAGKVDMAWKFFHEMKANG-LVLDDVTYTSMIGV 314

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKF-FNTLL-------------------------- 125
             +A  L  A+++F+ M   N Q+   + +NT++                          
Sbjct: 315 LCKADRLNEAVELFEHMDQ-NKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIP 373

Query: 126 -----NPKLTC----GKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFD 176
                N  L+C    G++D   + F+ M+K   P+  +YNI+I     + +LE A  V D
Sbjct: 374 SVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRD 433

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
            M    L P ++T   ++  LC   R+D+A  + E +      +PD   + SLI+GL   
Sbjct: 434 AMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDH-KTCRPDAVTYCSLIEGLGRH 492

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK------ 290
           G +  A  + E+M+      +A +Y+SLI   FK GRK +   I  EM   GC       
Sbjct: 493 GRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLL 552

Query: 291 -----------------------------PNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
                                        P++ +Y  LI G  K      A+ +   M +
Sbjct: 553 NTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKE 612

Query: 322 KGCKANPISYNVILGGLCKDGK 343
           +GC  +  +YN ++ G CK GK
Sbjct: 613 QGCVLDTRAYNTVIDGFCKSGK 634



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 147/333 (44%), Gaps = 37/333 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ I++ LGR    DE  +   ++K D   +P    +  +I    +A  LE AL +
Sbjct: 374 SVVSYNCILSCLGRKGQVDEALKKFEEMKKDA--IPNLSTYNIMIDMLCKAGKLETALVV 431

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            D M    +   V   N +++      +LD    +F+ ++ K   PDA +Y  LI G   
Sbjct: 432 RDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGR 491

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV-------- 216
             R+++A+K++++M+     P  V + +LI       R ++  K+  +++R+        
Sbjct: 492 HGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLL 551

Query: 217 --------------------------YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
                                         PD + +  LI GL   G    A  +   M 
Sbjct: 552 LNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMK 611

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
                +D   Y+++I    K+G+ N+   +L+EMK +G +P  VTY ++I G  K +  +
Sbjct: 612 EQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLD 671

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            A+ + +E   KG + N + Y+ ++ G  K G+
Sbjct: 672 EAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGR 704



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 142/295 (48%), Gaps = 9/295 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I  L +A    E  ++ + +K    ++     +  VI  + ++  + +A Q+ +EM
Sbjct: 587 YTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRA-YNTVIDGFCKSGKVNKAYQLLEEM 645

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME----KYVSPDACSYNILIHGCVVS 165
            +   + TV  + ++++      K+DR+ E + + E    K +  +   Y+ LI G    
Sbjct: 646 KTKGHEPTVVTYGSVIDG---LAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKV 702

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            R+++A+ + +E++++ L P + T+  L+  L     + EAL   +  M+     P+   
Sbjct: 703 GRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQS-MKDLKCTPNYIT 761

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           ++ LI GLC + + + A    +EM +   + +   Y+++IS L KAG   E   + ++ K
Sbjct: 762 YSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFK 821

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           E+G   +S  YNA+I G         A+ + +E   KGC     +  V+L  L K
Sbjct: 822 EKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHK 876



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 129/270 (47%), Gaps = 9/270 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I    ++   ++  Q+L ++K      P  + + +VI    +   L+ A  +F+E 
Sbjct: 622 YNTVIDGFCKSGKVNKAYQLLEEMKTKGH-EPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 680

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME----KYVSPDACSYNILIHGCVVS 165
            S  +++ V  +++L++     GK+ R+ E + IME    K ++P+  ++N L+   V +
Sbjct: 681 KSKGIELNVVIYSSLIDG---FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKA 737

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             + +A   F  M   +  P  +T+  LI+GLC   + ++A    ++ M+    KP+   
Sbjct: 738 EEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQE-MQKQGFKPNVFT 796

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + ++I GL   G +  A  + E+        D+ IY+++I  L  A R ++   + +E +
Sbjct: 797 YTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEAR 856

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            +GC   + T   L+    K E  E A  +
Sbjct: 857 LKGCSIYTKTCVVLLDSLHKAECIEQAAIV 886



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 5/226 (2%)

Query: 122 NTLLNPKLTCGKLDRMKELF---QIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           NT +   L+  K  +++E F   Q M K    P   +Y  LI     SR  +    +F +
Sbjct: 166 NTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQ 225

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M +      +  F TLI     E RVD AL L ++ M+  +++PD  ++   I      G
Sbjct: 226 MQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDE-MKSNSLEPDVVLYNVCIDCFGKAG 284

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           ++ +A     EM  + + +D   Y+S+I  L KA R NE   + + M +    P +  YN
Sbjct: 285 KVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYN 344

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +I G+     FE A+++L+    KGC  + +SYN IL  L + G+
Sbjct: 345 TMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQ 390



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 132/295 (44%), Gaps = 4/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ ++  + R + F+ ++QIL ++       P       ++  + ++R L  A      M
Sbjct: 133 YNSLLMVMARTRKFNCLEQILEEMSI-AGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTM 191

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
                +     +  L+    T    D M  LFQ M++   + +   +  LI       R+
Sbjct: 192 RKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRV 251

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A  + DEM    L+P +V +   I       +VD A K   + M+   +  D   + S
Sbjct: 252 DAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHE-MKANGLVLDDVTYTS 310

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I  LC    L+ A+ + E M ++K    A  Y+++I     AG+  +  ++L+  + +G
Sbjct: 311 MIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKG 370

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C P+ V+YN ++S   ++   + A    +EM  K    N  +YN+++  LCK GK
Sbjct: 371 CIPSVVSYNCILSCLGRKGQVDEALKKFEEM-KKDAIPNLSTYNIMIDMLCKAGK 424


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
           +FD+M + L  + H T        + N+I    +ARLL+ A+ +  +M S  +       
Sbjct: 68  LFDKMAE-LGAVNHTT--------YYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLH 118

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
           N ++      G+L     +++ M     PD  +Y  L+HG   + RL DA +V  EMV  
Sbjct: 119 NVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSA 178

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
           R  P   T   ++  LCL  RVD+A +L E+++    +  +   +++L+ GLC    L  
Sbjct: 179 RHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLH-RGMAANAITYSALVDGLCKCERLDE 237

Query: 242 ALG-VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           A+  +  E+ R     D   YS++I  L KAGR  +   I +EM    C P ++TYN+LI
Sbjct: 238 AVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLI 294

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            G+C+  D + A  +L +M D  C  + I+Y  ++   CK G+
Sbjct: 295 GGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGR 337



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 156/325 (48%), Gaps = 18/325 (5%)

Query: 21  ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
           AL +++  N      +AHP      + L Y  ++  L +A    +  Q+L ++    R V
Sbjct: 134 ALGVYRQMN------DAHP-----PDFLTYTKLVHGLSKAGRLRDAVQVLQEMV-SARHV 181

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P       V+        ++ A ++ +EM    +      ++ L++    C +LD    L
Sbjct: 182 PDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVAL 241

Query: 141 F--QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
              ++  +  +PD  +Y+ +I G   + RL DA  +F+EM      PT +T+ +LI G C
Sbjct: 242 LLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYC 298

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
               +DEA++L   ++   N  PD   + +L+   C +G L  A  + ++MV +K+  D 
Sbjct: 299 RAGDMDEAIRLLGKMVD-DNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDV 357

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             ++SL+  L   GR  +   +L+E+  RGC P   TYN ++ G+CK      A  ++ +
Sbjct: 358 VTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVAD 417

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
              +G   N ++YN+++ G C+ G+
Sbjct: 418 FRSRGFVPNTVTYNILVAGCCRAGR 442



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 143/305 (46%), Gaps = 8/305 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + F  +++ Y  +I  L +A    +   I  ++       P  I + ++IG Y RA  ++
Sbjct: 249 RGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS----CAPTAITYNSLIGGYCRAGDMD 304

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            A+++  +M   N    V  + TL++     G+LD   ELFQ M    +SPD  ++  L+
Sbjct: 305 EAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLV 364

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G     R+EDA ++ +E+ +R   PT+ T+  ++ G C   +V +A +L  D  R    
Sbjct: 365 DGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADF-RSRGF 423

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK--IEMDAGIYSSLISALFKAGRKNEF 277
            P+   +  L+ G C  G    AL   +++  +         +Y+ ++ AL + GR ++ 
Sbjct: 424 VPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDA 483

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
               +EM +RG  P + T+  ++   CK    + A  +L+EM   G    P + + ++  
Sbjct: 484 VQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSA 543

Query: 338 LCKDG 342
            C+ G
Sbjct: 544 YCRAG 548



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 99/201 (49%), Gaps = 3/201 (1%)

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L +I ++ +SPD    N ++     +R    A  +FD+M +        T+  LI+ LC 
Sbjct: 34  LDEIRDRGLSPDPVELNTILAELCDARDTTTAMALFDKMAELG-AVNHTTYYNLIHPLCK 92

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
              +DEA+ L  D M+   + P   +   +I GLC  G L  ALGV  +M  D    D  
Sbjct: 93  ARLLDEAMGLLLD-MKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQM-NDAHPPDFL 150

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+ L+  L KAGR  +   +L+EM      P++ T   ++   C  +  + A  +++EM
Sbjct: 151 TYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEM 210

Query: 320 GDKGCKANPISYNVILGGLCK 340
             +G  AN I+Y+ ++ GLCK
Sbjct: 211 LHRGMAANAITYSALVDGLCK 231



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 119/244 (48%), Gaps = 7/244 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           +++ Y  +++   +    D+  ++  Q+  + ++ P  + F +++ G  G  R+ E AL+
Sbjct: 321 DVITYTTLMSAFCKMGRLDDAYELFQQMVAN-KLSPDVVTFTSLVDGLCGEGRM-EDALE 378

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCV 163
           + +E++      T+  +N +++      ++ + +EL      +   P+  +YNIL+ GC 
Sbjct: 379 LLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCC 438

Query: 164 VSRRLEDAWKVFDEMVKRRLQ-PTLVT-FGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
            + R + A +  D++       PT V  +  ++  LC + R D+A++  E++++   V P
Sbjct: 439 RAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYV-P 497

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
               FA+++  LC   +   A  + EEM++       G   +++SA  +AG   +   + 
Sbjct: 498 AAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELA 557

Query: 282 KEMK 285
            E++
Sbjct: 558 SELR 561



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 8/158 (5%)

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           TF  ++ GL    ++     L  D +R   + PD     +++  LC   + + A+ + ++
Sbjct: 12  TFAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDARDTTTAMALFDK 71

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M  +   ++   Y +LI  L KA   +E   +L +MK RG  P ++ +N +I G C+   
Sbjct: 72  MA-ELGAVNHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGR 130

Query: 309 FEAAFTILDEMGDKGCKANP---ISYNVILGGLCKDGK 343
              A  +  +M D    A+P   ++Y  ++ GL K G+
Sbjct: 131 LRHALGVYRQMND----AHPPDFLTYTKLVHGLSKAGR 164



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 35/122 (28%)

Query: 257 DAGIYSSLISALFKAGR-KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
           D+  ++ ++  L  + + ++  P +L E+++RG  P+ V  N +++  C   D   A  +
Sbjct: 9   DSSTFAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDARDTTTAMAL 68

Query: 316 LDEMGDKG--------------CKA------------------NP--ISYNVILGGLCKD 341
            D+M + G              CKA                  NP  + +NV++GGLC+ 
Sbjct: 69  FDKMAELGAVNHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRA 128

Query: 342 GK 343
           G+
Sbjct: 129 GR 130


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 153/304 (50%), Gaps = 11/304 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++  +++I      ++ D+  ++ H+++ +  +VP+   +  +I  Y +   L++A Q+
Sbjct: 69  SVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQL 128

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-----EKYVSPDACSYNILIH 160
            +E S  +  +       + +      K  R+ E +Q++     +K   PD  ++N++IH
Sbjct: 129 LEESSCCSSDVI-----AITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIH 183

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-KEDIMRVYNV 219
           G   + R+ +A+++ + +V     P  VT+ TLI G C    + EAL+L K    R ++ 
Sbjct: 184 GFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHA 243

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +P+   F +LI GLC    L  A  + ++M    +  D   Y++L+  L K GR +E   
Sbjct: 244 EPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSR 303

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + +EM   GC P+ VTY  L+   CK    + A  ++  M  KG   +  +Y V+L GL 
Sbjct: 304 VFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLF 363

Query: 340 KDGK 343
           ++GK
Sbjct: 364 ENGK 367



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 140/301 (46%), Gaps = 12/301 (3%)

Query: 52  LIITKLGR----AKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERALQM 105
           + IT + R    A+  DE  Q+L  +       P +I+  NVI  GF    R+ E A +M
Sbjct: 140 IAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKP-DIVAWNVIIHGFCKAGRVRE-AYEM 197

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM---EKYVSPDACSYNILIHGC 162
            + + S         + TL++     G L    +LF+++   + +  P+  ++N LI G 
Sbjct: 198 LETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGL 257

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             + RLE A+++  +M  R L+    T+ TL+ GLC + R  E  ++ E+++R     P 
Sbjct: 258 CKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLR-EGCNPS 316

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + +L+   C  G L  A  V   MV   I  D   Y+ L+  LF+ G+        +
Sbjct: 317 VVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFE 376

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++    C P +V Y+AL+ G CK    + A     EM D+    +P +  +++  LCK G
Sbjct: 377 KILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRG 436

Query: 343 K 343
           +
Sbjct: 437 R 437



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 109/224 (48%), Gaps = 7/224 (3%)

Query: 121 FNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           F+ L+      G+L    E + Q++E++  P+    N+L+     +  ++ A  +F  + 
Sbjct: 6   FSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAIFRGI- 64

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
             +  P+++T   LI G C    +D+AL+L  ++ + + + P+   + ++IK  C +  L
Sbjct: 65  --QCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRL 122

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE-RGCKPNSVTYNA 298
             A  + EE        D    +S+     KA R +E   +L +M E +  KP+ V +N 
Sbjct: 123 DQARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNV 180

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +I GFCK      A+ +L+ +   GC  N ++Y  ++ G CK G
Sbjct: 181 IIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSG 224



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 2/165 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +  R +   Y  ++  L +     E+ ++  ++  +    P  + +  ++  + +A  L+
Sbjct: 276 RDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREG-CNPSVVTYTTLVHAHCKAGSLQ 334

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILI 159
            A Q+   M +  +   V  +  LL      GK+    E F+ I+ +   P A  Y+ L+
Sbjct: 335 DAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALV 394

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
            GC  +  +++A K + EM+ RRL P   T   L+  LC   R D
Sbjct: 395 RGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 158/310 (50%), Gaps = 14/310 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L  Y+ +I     +  + + +Q+L ++  + +I P  + +  +I  + +      A ++
Sbjct: 289 DLFTYNSMIVGFCSSGRWSDAEQLLQEML-ERKISPDVVTYNALINAFVKEGKFFEAAEL 347

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           +DEM    +      +N++++      +LD  +++F +M  K  SPD  ++  LI G   
Sbjct: 348 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCG 407

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           ++R++D  ++  EM +R L    VT+ TLI+G CL   ++ AL L + ++    V PD  
Sbjct: 408 AKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMIS-SGVCPDIV 466

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG-----------IYSSLISALFKAGR 273
              +L+ GLC  G+L  AL + + M + K+++DA             Y+ LI  L   G+
Sbjct: 467 TCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGK 526

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   + +EM  RG  P+++TY+++I G CK+   + A  +   MG K    N +++N 
Sbjct: 527 FLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNT 586

Query: 334 ILGGLCKDGK 343
           ++ G CK G+
Sbjct: 587 LINGYCKAGR 596



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 141/269 (52%), Gaps = 3/269 (1%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           +R +P  + FC ++G   R    +  + ++ +M    ++  +  FN L+    +C KL  
Sbjct: 73  SRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPF 132

Query: 137 MKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
               F +I +  + PD  ++  L+HG  V  R+ +A   F +M +   +P +VTF TL+ 
Sbjct: 133 ALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMN 192

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR-DKI 254
           GLC E R+ EA+ L + +M    ++P    + +++ G+C  G+   AL +  +M     I
Sbjct: 193 GLCREGRIVEAVALLDRMME-DGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHI 251

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
             +  IYS++I +L K GR ++   +  EM+E+G  P+  TYN++I GFC    +  A  
Sbjct: 252 IPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQ 311

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +L EM ++    + ++YN ++    K+GK
Sbjct: 312 LLQEMLERKISPDVVTYNALINAFVKEGK 340



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 139/286 (48%), Gaps = 14/286 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  +  +I     AK  D+  ++LH++     +V   + +  +I  +     L  AL +
Sbjct: 394 DVFTFTTLIDGYCGAKRIDDGMELLHEMPR-RGLVANTVTYNTLIHGFCLVGDLNAALDL 452

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY------------VSPDAC 153
             +M S  V   +   NTLL+     GKL    E+F+ M+K             V PD  
Sbjct: 453 SQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVL 512

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YNILI G +   +  +A ++++EM  R + P  +T+ ++I GLC + R+DEA ++    
Sbjct: 513 TYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVS- 571

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M   +  P+   F +LI G C  G +   L +  EM R  I  DA IY +LI    K G 
Sbjct: 572 MGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGN 631

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            N    I +EM   G  P+++T   +++GF  +E+ E A  +L+++
Sbjct: 632 INGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 677



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 143/302 (47%), Gaps = 4/302 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R N++ +  ++  L R     E   +L ++  D  + P +I +  ++    +      AL
Sbjct: 181 RPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG-LQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 104 QMFDEMSSF-NVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
            +  +M    ++   V  ++ +++     G+    + LF ++ EK + PD  +YN +I G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              S R  DA ++  EM++R++ P +VT+  LI     E +  EA +L ++++    + P
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLP-RGIIP 358

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   + S+I G C    L  A  +   M       D   +++LI     A R ++   +L
Sbjct: 359 NTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELL 418

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM  RG   N+VTYN LI GFC   D  AA  +  +M   G   + ++ N +L GLC +
Sbjct: 419 HEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDN 478

Query: 342 GK 343
           GK
Sbjct: 479 GK 480



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 134/305 (43%), Gaps = 14/305 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y+ +I    +    D  + + + L       P    F  +I  Y  A+ ++  +++
Sbjct: 359 NTITYNSMIDGFCKQDRLDAAEDMFY-LMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 417

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
             EM    +      +NTL++     G L+   +L Q M    V PD  + N L+ G   
Sbjct: 418 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCD 477

Query: 165 SRRLEDAWKVFDEMVKRRL-----------QPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           + +L+DA ++F  M K ++           +P ++T+  LI GL  E +  EA +L E+ 
Sbjct: 478 NGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEE- 536

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M    + PD   ++S+I GLC    L  A  +   M       +   +++LI+   KAGR
Sbjct: 537 MPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGR 596

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            ++   +  EM  RG   +++ Y  LI GF K  +   A  I  EM   G   + I+   
Sbjct: 597 VDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRN 656

Query: 334 ILGGL 338
           +L G 
Sbjct: 657 MLTGF 661



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 1/177 (0%)

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
           + LEDA  +F +M++ R  P++V F  L+  +    R D  + L + + R   ++ D   
Sbjct: 58  KGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMER-KQIRCDIYS 116

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F  LIK  C+  +L  AL    ++ +  +  D   +++L+  L    R +E      +M 
Sbjct: 117 FNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMF 176

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           E  C+PN VT+  L++G C+E     A  +LD M + G +   I+Y  I+ G+CK G
Sbjct: 177 ETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG 233


>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
 gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
          Length = 894

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 151/304 (49%), Gaps = 3/304 (0%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           +K     ++ Y  II  LGR     +++ +L ++K +  + P   I+  VI    + R  
Sbjct: 339 MKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMK-ERGLSPNVQIYNTVIYALCKCRSA 397

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNIL 158
            +AL + ++M +      V  FNTL+      G ++  +K L + + + + P+  SY  L
Sbjct: 398 SQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPL 457

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           IHG  V   +  A  +  EM+ R   P +VT G LI+GL +  +VDEAL ++E  M    
Sbjct: 458 IHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREK-MAERQ 516

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V PD  ++  LI GLC    LS A  +  EM+  K++ D  +Y++LI    ++ + ++  
Sbjct: 517 VMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDAR 576

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            I + M+E+G   + V YNA+I G+CK      A   +  M   GC  +  +Y  ++ G 
Sbjct: 577 KIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGY 636

Query: 339 CKDG 342
            K G
Sbjct: 637 AKKG 640



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 121/249 (48%), Gaps = 8/249 (3%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC--GKLDRMKELFQI-MEKYVSPDACSYN 156
           E A +++ EM + + +     ++T +  +  C  G+++  + L +    +   P A  YN
Sbjct: 256 ECARRLYGEMLARDREGGADDYSTCVMVRGLCLEGRVEEGRRLIEARWGEGCVPGAVFYN 315

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--M 214
           +LI G      +     +  EM  + + PT+VT+G +I+ L    R  +  K++  +  M
Sbjct: 316 VLIDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLG---RKSDLTKIESLLWEM 372

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           +   + P+ Q++ ++I  LC     S AL V  +MV  + + D   +++LI+A  + G  
Sbjct: 373 KERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDV 432

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            E   +L+E   R  +PN ++Y  LI GFC   +   A  +L EM  +G   + ++   +
Sbjct: 433 EEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGAL 492

Query: 335 LGGLCKDGK 343
           + GL   G+
Sbjct: 493 IHGLVVSGQ 501



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 110/247 (44%), Gaps = 4/247 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           ++ AL + ++M+   V      +N L++       L   K L  +++E+ V PD   Y  
Sbjct: 502 VDEALMVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTT 561

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G + S +L DA K+F+ M ++     +V +  +I G C    ++EA+      MR  
Sbjct: 562 LIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSS-MRKV 620

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
              PD   + +LI G    G++  AL    +M++ + + +   Y+SLI      G  +  
Sbjct: 621 GCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSA 680

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +   M+  G  PN V Y  LI    K++    A    + M    C  N  + + ++ G
Sbjct: 681 EVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLNHCSPNDATMHYLVNG 740

Query: 338 L--CKDG 342
           L  C+ G
Sbjct: 741 LTNCRYG 747



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 125/319 (39%), Gaps = 52/319 (16%)

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           + +++P   I+  +I    + R+L  A  +  EM    VQ     + TL++  +   KL 
Sbjct: 514 ERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLS 573

Query: 136 RMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
             +++F+ ME K    D  +YN +I G   S  + +A      M K    P   T+ TLI
Sbjct: 574 DARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLI 633

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
            G   +  +  AL+   D+M+    KP+   +ASLI G C +G    A  +   M  + +
Sbjct: 634 DGYAKKGDIKAALRFLCDMMK-RRCKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGL 692

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT------------------- 295
             +   Y+ LI +LFK  +  +  A  + M    C PN  T                   
Sbjct: 693 FPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLNHCSPNDATMHYLVNGLTNCRYGMINSN 752

Query: 296 -------------------------------YNALISGFCKEEDFEAAFTILDEMGDKGC 324
                                          YNA+I   C+      A  + ++M +KGC
Sbjct: 753 CSDTDQAHKKSALLDVFKGLISDGLDPRISAYNAIIFSLCRHNMLGKAMELKEKMSNKGC 812

Query: 325 KANPISYNVILGGLCKDGK 343
             +P+++  +L G    GK
Sbjct: 813 LPDPVTFLSLLYGFSSVGK 831



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 91/195 (46%), Gaps = 3/195 (1%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT--LIYGLCLELRVDEAL 207
           PDA   N L+   V  RR E A +++ EM+ R  +     + T  ++ GLCLE RV+E  
Sbjct: 237 PDAPHCNRLLRLLVDRRRWECARRLYGEMLARDREGGADDYSTCVMVRGLCLEGRVEEGR 296

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           +L E       V P    +  LI G C  G++   L +  EM    I      Y ++I  
Sbjct: 297 RLIEARWGEGCV-PGAVFYNVLIDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHW 355

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L +     +  ++L EMKERG  PN   YN +I   CK      A  +L++M       +
Sbjct: 356 LGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPD 415

Query: 328 PISYNVILGGLCKDG 342
            +++N ++   C++G
Sbjct: 416 VVTFNTLIAAFCREG 430



 Score = 40.8 bits (94), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 49/254 (19%), Positives = 101/254 (39%), Gaps = 22/254 (8%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I    ++ M +E    +  ++     +P E  +  +I  Y +   ++ AL+ 
Sbjct: 590 DIVAYNAMIKGYCKSGMMNEAVMCMSSMR-KVGCIPDEFTYTTLIDGYAKKGDIKAALRF 648

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
             +M     +  +  + +L+      G  D  + LF  M+ + + P+   Y +LI     
Sbjct: 649 LCDMMKRRCKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFK 708

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL-----------CLELRVDEALKLKEDI 213
             +   A   F+ M+     P   T   L+ GL           C +   D+A K K  +
Sbjct: 709 KDKAIQAAAYFEHMLLNHCSPNDATMHYLVNGLTNCRYGMINSNCSD--TDQAHK-KSAL 765

Query: 214 MRVY------NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           + V+       + P    + ++I  LC    L  A+ +KE+M       D   + SL+  
Sbjct: 766 LDVFKGLISDGLDPRISAYNAIIFSLCRHNMLGKAMELKEKMSNKGCLPDPVTFLSLLYG 825

Query: 268 LFKAGRKNEFPAIL 281
               G+  ++ + L
Sbjct: 826 FSSVGKSGKWRSAL 839


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 141/258 (54%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++  Y R   L+   ++   M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 156 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 215

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 216 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 275

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 276 KGDLKQAHHLIDE-MSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEV 334

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP+S TY  +I+ FCK+ D      +L EM
Sbjct: 335 AYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDVWKGSKLLKEM 394

Query: 320 GDKGCKANPISYNVILGG 337
              G   + ++YNV++ G
Sbjct: 395 QRDGHVPSVVTYNVLMNG 412



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 130/239 (54%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   SYN L++G + 
Sbjct: 111 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 170

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++ +++   M+   +QP + T+  LI GLC E ++D+A +L ++ M V  + P+G 
Sbjct: 171 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDE-MLVKGLVPNGV 229

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM
Sbjct: 230 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 289

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +  KP+ +TY  LI G CKE D ++AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 290 SMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGR 348



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 133/244 (54%), Gaps = 6/244 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 142 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS--AMLASGVQPDVYTYSVL 199

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G     +++DA ++FDEM+ + L P  VTF TLI G C   RVD A+++ + ++   +
Sbjct: 200 INGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QS 258

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   + +LI GLC  G+L  A  + +EM   +++ D   Y++LI    K G  +   
Sbjct: 259 LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAF 318

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
              K M +   + + V Y ALISG C+E     A  +L EM + G K +  +Y +I+   
Sbjct: 319 EHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEF 378

Query: 339 CKDG 342
           CK G
Sbjct: 379 CKKG 382



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G      ++   + + G +P+ V+YN L+
Sbjct: 106 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 165

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 166 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 208


>gi|297738205|emb|CBI27406.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 158/310 (50%), Gaps = 23/310 (7%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF------YG 94
           +  + +++ Y ++++ L ++   DE   +LH+++              VIG       Y 
Sbjct: 404 QGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEME--------------VIGLKPDLLTYS 449

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDAC 153
           R  + E A+++++EM S  +       + +++     G +   +  F  + K  V+ +  
Sbjct: 450 RGAV-EEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEII 508

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
            YNI+I G      + +A + + +++++ + PT+VTF +LIYG C + ++ EA+KL  D 
Sbjct: 509 LYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLL-DT 567

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           ++V+ + P    + +L+ G C  G++     +  EM    I+     Y+ ++  L K GR
Sbjct: 568 IKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGR 627

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +E   +LK M  RG  P+ +TYN +I  FCK  D + AF + ++M     + +P++YNV
Sbjct: 628 LHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNV 687

Query: 334 ILGGLCKDGK 343
           ++ GLC  G 
Sbjct: 688 LINGLCVYGN 697



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 155/318 (48%), Gaps = 26/318 (8%)

Query: 33  NDTEAHPLKP--FRYNLLHYDLIITKL--GRAKMFDEMQQILHQLKHDTRIVPKEIIFCN 88
           ND E H ++P    YN+L     I  L  G  K+   M  +L+ L  D  +V   I+ C 
Sbjct: 329 NDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRM--LLNGLNPD--LVTYTILIC- 383

Query: 89  VIGFYGRARL--LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK 146
                G  ++  +E + ++ ++M S  +++++  +  LL+     G++D    L   ME 
Sbjct: 384 -----GHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEV 438

Query: 147 Y-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
             + PD  +Y+    G V     E+A ++++EM  +R+ P       +I GL  +  + E
Sbjct: 439 IGLKPDLLTYS---RGAV-----EEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISE 490

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           A ++  D +   +V  +  ++  +I G   +G +  A+   ++++   I      ++SLI
Sbjct: 491 A-QMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLI 549

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
               K G+  E   +L  +K  G  P SVTY  L++G+C+E D  + F +L EM  K  K
Sbjct: 550 YGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIK 609

Query: 326 ANPISYNVILGGLCKDGK 343
              I+Y V++ GLCK+G+
Sbjct: 610 PTQITYTVVVKGLCKEGR 627



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 123/253 (48%), Gaps = 7/253 (2%)

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLL-NPKLTCGKLDRMKELF-QIMEKYVSP 150
           Y RA ++  AL +  +M   N+Q+++  +N+LL N + T    D M +++ +I    V  
Sbjct: 178 YSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHT----DIMWDVYNEIKASGVPQ 233

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           +  +  ILI G     RL+DA     E       P++V+F  L+ G C    VD A K  
Sbjct: 234 NEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVA-KSF 292

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
             +M  Y + PD   +  L+ GLC  G +  AL    +M    +E D   Y+ L +    
Sbjct: 293 FCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRI 352

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            G  +    +++ M   G  P+ VTY  LI G C+  + E +F + ++M  +G K + ++
Sbjct: 353 LGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVT 412

Query: 331 YNVILGGLCKDGK 343
           Y V+L  LCK G+
Sbjct: 413 YTVLLSSLCKSGR 425



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 107/229 (46%), Gaps = 4/229 (1%)

Query: 79  IVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           I P  + F ++I GF  + +L E A+++ D +    +  T   + TL+N     G +  M
Sbjct: 538 ISPTIVTFNSLIYGFCKKGKLAE-AVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSM 596

Query: 138 KELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
            ++   ME K + P   +Y +++ G     RL ++ ++   M  R L P  +T+ T+I  
Sbjct: 597 FDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQS 656

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
            C    + +A +L   +++ ++++P    +  LI GLC  G L  A  +   +    I +
Sbjct: 657 FCKAHDLQKAFQLHNQMLQ-HSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRL 715

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
               Y+++I A    G          +M ERG + +   Y+A+I+  CK
Sbjct: 716 TKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCK 764



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 111/246 (45%), Gaps = 10/246 (4%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           +VP  + +  ++  Y     +     M  EM +  ++ T   +  ++      G+L    
Sbjct: 573 LVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESV 632

Query: 139 ELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           +L + M  + + PD  +YN +I     +  L+ A+++ ++M++  LQP+ VT+  LI GL
Sbjct: 633 QLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGL 692

Query: 198 CLELRVDEA----LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           C+   + +A    + L++  +R+  V      + ++IK  CA G++  AL    +MV   
Sbjct: 693 CVYGNLKDADRLLVTLQDQSIRLTKV-----AYTTIIKAHCAKGDVQNALVFFHQMVERG 747

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
            E+    YS++I+ L K     +       M   G  P+      +++ F +  D  + F
Sbjct: 748 FEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVF 807

Query: 314 TILDEM 319
            I   M
Sbjct: 808 EIFAMM 813


>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 418

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 139/244 (56%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y R   L++  ++ + M +  VQ  V  ++ L+N      K++   +L
Sbjct: 169 PSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++K + P+  ++  LI G   + +++ A + + +M+ +   P L+T+ TLIYGLC 
Sbjct: 229 FNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ MR+  +KPD   + +LI G C  G+L  A  ++E MV++ I +D  
Sbjct: 289 KGDLKQAQDLLDE-MRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP++ TY  +I+ FCK+ED + A  +L EM
Sbjct: 348 AYTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEM 407

Query: 320 GDKG 323
             +G
Sbjct: 408 QRQG 411



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 126/228 (55%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G++   + +F  + K+ + P   S+N L++G +    L+  +K+ 
Sbjct: 135 SLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E +++EA  L  +++    + P+G  F +LI G C 
Sbjct: 195 NAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLD-KGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G++  A+   ++M+      D   Y++LI  L K G   +   +L EM+ +G KP+ +T
Sbjct: 254 NGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D ++AF + + M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGR 361



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 126/240 (52%), Gaps = 2/240 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIH 160
           A  +FD ++ + ++ +V  FNTL+N  +  G LD+  +L   M    V PD  +Y++LI+
Sbjct: 155 AQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLIN 214

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     ++ +A  +F+EM+ + L P  VTF TLI G C   +VD A++  + ++    + 
Sbjct: 215 GLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFL- 273

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   + +LI GLC  G+L  A  + +EM    ++ D   Y++LI    K G  +    +
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFEL 333

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            + M +   + + V Y ALISG C+E     A  +L EM   G K +  +Y +I+   CK
Sbjct: 334 RETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCK 393



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 109/222 (49%), Gaps = 2/222 (0%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           H + + P    +  +I    +   +  A  +F+EM    +      F TL++     GK+
Sbjct: 198 HASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKV 257

Query: 135 DRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           D   E + Q++ +   PD  +YN LI+G      L+ A  + DEM  + L+P  +T+ TL
Sbjct: 258 DSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTL 317

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G C E  +D A +L+E +++  +++ D   + +LI GLC  G  + A  +  EM+   
Sbjct: 318 IDGNCKEGDLDSAFELRETMVK-ESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVG 376

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
           ++ D G Y+ +I+   K         +LKEM+ +G  P  VT
Sbjct: 377 LKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGHVPCVVT 418



 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 51/103 (49%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  +E++          ++ L+    K G      ++   + + G +P+ V++N L+
Sbjct: 119 LVWGFYKEILECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESK 221


>gi|356523400|ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Glycine max]
          Length = 664

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 161/335 (48%), Gaps = 36/335 (10%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F++  L Y ++I KLGR    D +  ILHQ+K + RI   +  F  V+  Y  + L +RA
Sbjct: 69  FKHTPLTYHVMIEKLGRNSELDALHYILHQMKIE-RIPCSQDSFICVLNSYKNSGLGDRA 127

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKL--TCGKLDRMKELFQIME-KYVSPDACSYNILI 159
           L+MF  +  F  + TVK +N LL+  L  +  K   +  +++ M  + + P+  +YN+L+
Sbjct: 128 LKMFYRIKEFGCKPTVKIYNHLLDALLGESGNKFHMIGAVYENMRGEGMEPNVFTYNVLL 187

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK-----EDIM 214
                + +L+ A K+  EM KR   P  V++ T++  +C + RV+EA ++      E ++
Sbjct: 188 KALCKNGKLDGACKLLVEMSKRGCVPDGVSYTTVVAAMCEDGRVEEAREVARRFGAEGVV 247

Query: 215 RVYN--------------------------VKPDGQVFASLIKGLCAVGELSLALGVKEE 248
            V N                          V P+   ++S+I  L  VGE+ LAL V  +
Sbjct: 248 SVCNALICGLCREGRVGEVFGLMDEMVGNGVDPNVVSYSSVISWLSDVGEVELALAVLGK 307

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M+R     +   +SSL+   F  GR  E   + + M   G +PN V YN L++G C   +
Sbjct: 308 MIRRGCRPNVHTFSSLMKGYFLGGRVGEGVGLWRVMVLEGVRPNVVVYNTLLNGLCCSGN 367

Query: 309 FEAAFTILDEM-GDKGCKANPISYNVILGGLCKDG 342
              A  +   M  D  C+ N  +Y+ ++ G  K G
Sbjct: 368 LAEAVDVCGRMEKDCFCRPNVTTYSTLVHGFVKAG 402



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 126/255 (49%), Gaps = 4/255 (1%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK--YV 148
           G++   R+ E  + ++  M    V+  V  +NTLLN     G L    ++   MEK  + 
Sbjct: 326 GYFLGGRVGE-GVGLWRVMVLEGVRPNVVVYNTLLNGLCCSGNLAEAVDVCGRMEKDCFC 384

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
            P+  +Y+ L+HG V +  L+ A +V+++MV   ++P +V + +++  LC     D+A +
Sbjct: 385 RPNVTTYSTLVHGFVKAGDLQGASEVWNKMVNCGVRPNVVVYTSMVDVLCKNSMFDQAYR 444

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           L ++ M      P    F + IKGLC  G +  A+ V ++M R     D   Y+ L+  L
Sbjct: 445 LIDN-MATDGCPPTVVTFNTFIKGLCCGGRVLWAMRVVDQMQRYGCLPDTRTYNELLDGL 503

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
           F      E   +++E++ER  + N VTYN ++ GF      E    +L  M   G K + 
Sbjct: 504 FSVNELKEACELIRELEERKVELNLVTYNTVMYGFSSHGKEEWVLQVLGRMLVNGVKPDA 563

Query: 329 ISYNVILGGLCKDGK 343
           I+ NV++    K GK
Sbjct: 564 ITVNVVIYAYSKLGK 578



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 133/283 (46%), Gaps = 6/283 (2%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R N+  Y  ++    +A       ++ +++  +  + P  +++ +++    +  + ++A 
Sbjct: 385 RPNVTTYSTLVHGFVKAGDLQGASEVWNKMV-NCGVRPNVVVYTSMVDVLCKNSMFDQAY 443

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGK--LDRMKELFQIMEKYVSPDACSYNILIHG 161
           ++ D M++     TV  FNT +   L CG   L  M+ + Q+      PD  +YN L+ G
Sbjct: 444 RLIDNMATDGCPPTVVTFNTFIK-GLCCGGRVLWAMRVVDQMQRYGCLPDTRTYNELLDG 502

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 L++A ++  E+ +R+++  LVT+ T++YG     + +  L++    M V  VKP
Sbjct: 503 LFSVNELKEACELIRELEERKVELNLVTYNTVMYGFSSHGKEEWVLQVLGR-MLVNGVKP 561

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDK-IEMDAGIYSSLISALFKAGRKNEFPAI 280
           D      +I     +G++  A+   + +   K +  D   ++SL+  +  +    E    
Sbjct: 562 DAITVNVVIYAYSKLGKVRTAIQFLDRITAGKELCPDIIAHTSLLWGICNSLGIEEAIVY 621

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           L +M  +G  PN  T++ L+ GF K+        ILD++  KG
Sbjct: 622 LNKMLNKGIFPNIATWDVLVRGFFKKLGHMGPIRILDDILGKG 664



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 260 IYSSLISALF-KAGRK-NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           IY+ L+ AL  ++G K +   A+ + M+  G +PN  TYN L+   CK    + A  +L 
Sbjct: 145 IYNHLLDALLGESGNKFHMIGAVYENMRGEGMEPNVFTYNVLLKALCKNGKLDGACKLLV 204

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
           EM  +GC  + +SY  ++  +C+DG+
Sbjct: 205 EMSKRGCVPDGVSYTTVVAAMCEDGR 230


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 161/365 (44%), Gaps = 49/365 (13%)

Query: 13  RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ 72
           R ++D    + LF   +  PN         F+ +   +  ++ KLG+A  FD M+ IL +
Sbjct: 64  RREEDSSAVIHLFYWASKQPN---------FKPSSSIFKEVLHKLGKAGEFDAMKDILKE 114

Query: 73  LKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS-SFNVQMTVKFFNTLLNPKLTC 131
           +K    ++  + +    I  Y    L    LQ  D M   F V     F+N LLN  +  
Sbjct: 115 MKISLSVIDNDSLLV-FIESYASFGLYNEILQFVDAMEVEFGVVANTHFYNFLLNVLVDG 173

Query: 132 GKLDRMKELFQ--IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
            KL ++ E+    ++ + + PD  ++NILI     + ++  A  + +EM    L P   T
Sbjct: 174 NKL-KLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKT 232

Query: 190 FGTLI-----------------------------------YGLCLELRVDEALKLKEDIM 214
           F T++                                    G C E R++EAL+  E++ 
Sbjct: 233 FTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMS 292

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
                 PD   F  L+ GL   G +  AL V + M+R+  + D   Y+SLIS L K G  
Sbjct: 293 LREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEV 352

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +E   +L +M ER C PN+VTYN +IS  CKE   E A  +   +  KG   +  +YN +
Sbjct: 353 DEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSL 412

Query: 335 LGGLC 339
           + GLC
Sbjct: 413 IQGLC 417



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/252 (34%), Positives = 132/252 (52%), Gaps = 4/252 (1%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKF-FNTLLNPKLTCGKLDRMKELFQIM-EKYV 148
           GF    R+ E AL+  +EMS        K+ FN L+N     G +    E+  +M  +  
Sbjct: 274 GFCKEGRI-EEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGF 332

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
            PD  +YN LI G      +++A KV ++M++R   P  VT+ T+I  LC E +V+EA K
Sbjct: 333 DPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATK 392

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           L   ++    + PD   + SLI+GLC     ++A+ + +EM       D   Y+ LI +L
Sbjct: 393 LAL-VLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSL 451

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
              G+  E   +LKEM+  GC  N +TYN LI GFCK +    A  I D+M  +G   N 
Sbjct: 452 CFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNS 511

Query: 329 ISYNVILGGLCK 340
           ++YN ++ GLCK
Sbjct: 512 VTYNTLIDGLCK 523



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 132/263 (50%), Gaps = 2/263 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKE 139
           P +  F  ++    +   ++ AL++ D M        +  +N+L++     G++D  +K 
Sbjct: 299 PDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKV 358

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L Q++E+  SP+  +YN +I       ++E+A K+   +  + + P + T+ +LI GLCL
Sbjct: 359 LNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCL 418

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
                 A++L ++ M+     PD   +  LI  LC  G+L  AL + +EM       +  
Sbjct: 419 SRNHTVAMELYKE-MKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVI 477

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI    K  R  E   I  +M+ +G   NSVTYN LI G CK E  E A  ++D+M
Sbjct: 478 TYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQM 537

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
             +G + +  +YN +L   CK G
Sbjct: 538 IMEGLRPDKFTYNSLLTYFCKAG 560



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 127/246 (51%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           ++ A+++ ++M   +       +NT+++      +++   +L  ++  K + PD C+YN 
Sbjct: 352 VDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNS 411

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G  +SR    A +++ EM  +   P   T+  LI  LC   ++ EAL L ++ M V 
Sbjct: 412 LIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKE-MEVS 470

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
               +   + +LI G C    ++ A  + ++M    +  ++  Y++LI  L K+ R  E 
Sbjct: 471 GCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEA 530

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++ +M   G +P+  TYN+L++ FCK  D + A  I+  M   GC+ + ++Y  ++ G
Sbjct: 531 SQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAG 590

Query: 338 LCKDGK 343
           LCK G+
Sbjct: 591 LCKAGR 596



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 144/298 (48%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y+ II+ L +    +E  ++   L     I+P    + ++I     +R    A+++
Sbjct: 370 NTVTYNTIISTLCKENQVEEATKLALVLT-GKGILPDVCTYNSLIQGLCLSRNHTVAMEL 428

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           + EM +         +N L++     GKL     L + ME    + +  +YN LI G   
Sbjct: 429 YKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCK 488

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           ++R+ +A ++FD+M  + +    VT+ TLI GLC   RV+EA +L  D M +  ++PD  
Sbjct: 489 NKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLM-DQMIMEGLRPDKF 547

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SL+   C  G++  A  + + M  D  E D   Y +LI+ L KAGR      +L+ +
Sbjct: 548 TYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTI 607

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + +G       YN +I    + +  + A  +  EM +K    + ++Y ++  GLC+ G
Sbjct: 608 QMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGG 665



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 142/297 (47%), Gaps = 3/297 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  ++  Y+ +I+ L +    DE  ++L+Q+  +    P  + +  +I    +   +E A
Sbjct: 332 FDPDIYTYNSLISGLCKLGEVDEAVKVLNQMI-ERDCSPNTVTYNTIISTLCKENQVEEA 390

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHG 161
            ++   ++   +   V  +N+L+             EL++ M+ K   PD  +YN+LI  
Sbjct: 391 TKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDS 450

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                +L++A  +  EM        ++T+ TLI G C   R+ EA ++  D M +  V  
Sbjct: 451 LCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIF-DQMELQGVSR 509

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   + +LI GLC    +  A  + ++M+ + +  D   Y+SL++   KAG   +   I+
Sbjct: 510 NSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIV 569

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           + M   GC+P+ VTY  LI+G CK    EAA  +L  +  KG    P +YN ++  L
Sbjct: 570 QTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQAL 626



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 131/280 (46%), Gaps = 7/280 (2%)

Query: 68  QILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127
           +I H       I P    F  +I    RA  +  A+ + +EM  F +    K F T++  
Sbjct: 180 EIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQG 239

Query: 128 KLTCGKLD---RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR-L 183
            +  G LD   R+KE  Q++E        + N+L++G     R+E+A +  +EM  R   
Sbjct: 240 FIEEGNLDGAMRVKE--QMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGF 297

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P   TF  L+ GL     V  AL++  D+M      PD   + SLI GLC +GE+  A+
Sbjct: 298 FPDKYTFNMLVNGLSKTGHVKHALEVM-DMMLREGFDPDIYTYNSLISGLCKLGEVDEAV 356

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            V  +M+      +   Y+++IS L K  +  E   +   +  +G  P+  TYN+LI G 
Sbjct: 357 KVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGL 416

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C   +   A  +  EM  KGC  +  +YN+++  LC  GK
Sbjct: 417 CLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGK 456



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 1/133 (0%)

Query: 212 DIMRV-YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
           D M V + V  +   +  L+  L    +L L       MV   I  D   ++ LI AL +
Sbjct: 148 DAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCR 207

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
           A +      +++EM++ G  P+  T+  ++ GF +E + + A  + ++M + GC    ++
Sbjct: 208 AHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVT 267

Query: 331 YNVILGGLCKDGK 343
            NV++ G CK+G+
Sbjct: 268 VNVLVNGFCKEGR 280


>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 137/244 (56%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  +I  Y +   L+   ++   M +   Q  V  ++ L+N     GKLD   EL
Sbjct: 169 PSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANEL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++  + P+  ++  LIHG   + +++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +   L ++ M +  +KPD   + +LI G C  G+L +AL ++ +M+++ I +D  
Sbjct: 289 KGELKQVHDLIDE-MIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP++ TY  +I+ FCK+ D + A  +L EM
Sbjct: 348 AYTALISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREM 407

Query: 320 GDKG 323
              G
Sbjct: 408 QRDG 411



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 128/248 (51%), Gaps = 2/248 (0%)

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSY 155
           R  +     + E+       ++ FFN L+      G++   + +F  + K+ + P   S+
Sbjct: 115 RYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSF 174

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N LI+G +    L++ +++   M     QP + T+  LI GLC E ++DEA +L  +++ 
Sbjct: 175 NTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLD 234

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
              + P+G  F +LI G C   ++ LA+ + ++M+   +  D   Y++LI  L K G   
Sbjct: 235 -NGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELK 293

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +   ++ EM   G KP+ ++Y  LI G CKE D E A  + ++M  +  + + ++Y  ++
Sbjct: 294 QVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALI 353

Query: 336 GGLCKDGK 343
             LC++G+
Sbjct: 354 SCLCREGR 361



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 110/246 (44%), Gaps = 36/246 (14%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I  L +    DE  ++ +++  D  +VP  + F  +I  + +   ++ A++++ +M
Sbjct: 209 YSILINGLCKEGKLDEANELFNEML-DNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQM 267

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
                                             + + +SPD  +YN LI+G      L+
Sbjct: 268 ----------------------------------LSQGLSPDLITYNTLIYGLCKKGELK 293

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
               + DEM+   L+P  +++ TLI G C E  ++ AL+L+  +++  +++ D   + +L
Sbjct: 294 QVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQ-ESIRLDDVAYTAL 352

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           I  LC  G    A  +  EM+   ++ D G Y+ +I+   K         +L+EM+  G 
Sbjct: 353 ISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGP 412

Query: 290 KPNSVT 295
            P  VT
Sbjct: 413 VPGVVT 418


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 166/338 (49%), Gaps = 27/338 (7%)

Query: 13  RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ 72
           R Q+ P+L  + F               + FR  + H +L+I  L +   FD   +IL +
Sbjct: 72  REQRRPELGFRFF---------IWTTRRRSFRSWVTH-NLVIDMLAKDDGFDTYWKILEE 121

Query: 73  LKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132
           LK+    +P    F  +I  Y ++ + E+A++ F +M  F  +  V  +N++L+  +   
Sbjct: 122 LKNSNIQIPPPT-FSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQ-- 178

Query: 133 KLDRMKELF--------QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ 184
                KE+F        Q+++   +P+  ++ IL++G   + + +DA K+FDEM ++ + 
Sbjct: 179 -----KEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIP 233

Query: 185 PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
           P  + +  ++ GLC   R D+  +L  + M+V    PD     +L+ G C +G++  A  
Sbjct: 234 PNTMIYTIILSGLCQAKRTDDVHRLL-NTMKVSGCCPDSITCNALLDGFCKLGQIDEAFA 292

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           + +   ++   +    YSSLI  LF+A R +E     ++M + G +P+ V Y  LI GFC
Sbjct: 293 LLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFC 352

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +    + A  +L++M  +G   +   YN ++ G C  G
Sbjct: 353 EVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVG 390



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 135/327 (41%), Gaps = 54/327 (16%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           KMFDEM Q          I P  +I+  ++    +A+  +   ++ + M           
Sbjct: 222 KMFDEMTQ--------KGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSIT 273

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
            N LL+     G++D    L Q+ EK  YV      Y+ LI G   ++R ++  +   +M
Sbjct: 274 CNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIK-GYSSLIDGLFRAKRYDEVQEWCRKM 332

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
            K  ++P +V +  LI G C    VD AL +  D M    + PD   + +LIKG C VG 
Sbjct: 333 FKAGIEPDVVLYTILIRGFCEVGMVDYALNMLND-MTQRGLSPDTYCYNALIKGFCDVGL 391

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           L  A  ++ E+ ++     +  Y+ LI  + + G  +E   I  +M+  GC P+ +T+NA
Sbjct: 392 LDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNA 451

Query: 299 LISGFCKEEDFEA------------------------------------------AFTIL 316
           LI G CK  + E                                           AF +L
Sbjct: 452 LIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTANGFHRVDREEDAFRVL 511

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
           D+M   GC  +   Y  ++   C+ GK
Sbjct: 512 DQMVKNGCTPSSAVYKCLMTWSCRKGK 538



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 137/335 (40%), Gaps = 44/335 (13%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L RAK +DE+Q+   ++     I P  +++  +I  +    +++ AL M ++M
Sbjct: 309 YSSLIDGLFRAKRYDEVQEWCRKM-FKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDM 367

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIHGCVVSRRL 168
           +   +      +N L+      G LD+ + L  +I +    P +C+Y ILI G   +  L
Sbjct: 368 TQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLL 427

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL------------------- 209
           ++A ++F++M      P+++TF  LI GLC    ++EA  L                   
Sbjct: 428 DEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQG 487

Query: 210 ----------------KEDIMRVYN------VKPDGQVFASLIKGLCAVGELSLALGVKE 247
                           +ED  RV +        P   V+  L+   C  G+LS+A  +  
Sbjct: 488 ADRVMDTANGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWL 547

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           + +R     +      L    F+ G   +    L EM  +        Y   + G C+  
Sbjct: 548 KYLRSLPSQEDETL-KLAEEHFEKGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQAR 606

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             E A  I   + +     NP S  +++ GLCKDG
Sbjct: 607 RSEEALKIFLVLKECQMDVNPPSCVMLINGLCKDG 641



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 90/190 (47%), Gaps = 1/190 (0%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           ++N++I         +  WK+ +E+    +Q    TF  LI         ++A++     
Sbjct: 98  THNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVE-SFGK 156

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M+ +  KPD   + S++  +       LAL V  +M++     +   +  L++ L K G+
Sbjct: 157 MKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGK 216

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            ++   +  EM ++G  PN++ Y  ++SG C+ +  +    +L+ M   GC  + I+ N 
Sbjct: 217 TDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNA 276

Query: 334 ILGGLCKDGK 343
           +L G CK G+
Sbjct: 277 LLDGFCKLGQ 286


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 158/304 (51%), Gaps = 13/304 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            L+ Y+ II  L +++  +  Q    +++    ++P  I + +++  Y +A  L+ AL +
Sbjct: 348 TLVTYNAIIHGLLKSEQVEAAQLKFAEMR-AMGLLPDLITYNSMLNGYCKAGNLKEALWL 406

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNILIHGC 162
             ++    +  TV  +NTL++     G L+   R+KE  +++E+   PD C+Y IL++G 
Sbjct: 407 LGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKE--EMVEQGCFPDVCTYTILMNGS 464

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL---RVDEALKLKEDIMRVYNV 219
              R L  A + FDEM+ + LQP    + T I   C EL      +A +L+E +M +  +
Sbjct: 465 HKVRNLPMAREFFDEMLSKGLQPDCFAYNTRI---CAELILGDTHKAFQLRE-VMMLKGI 520

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   +  +I GLC  G L  A  +K +MV D ++ D   Y+ LI A  + G  +E   
Sbjct: 521 YPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARK 580

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +L  M   G +P+ VTY  LI   C+  +  +A+    +M D G + N I+YNV++  LC
Sbjct: 581 LLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALC 640

Query: 340 KDGK 343
           + G+
Sbjct: 641 RTGR 644



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 136/296 (45%), Gaps = 3/296 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            +L Y+ +I    R    +E +++  ++  +    P    +  ++    + R L  A + 
Sbjct: 418 TVLTYNTLIDGYCRLGGLEEARRLKEEMV-EQGCFPDVCTYTILMNGSHKVRNLPMAREF 476

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           FDEM S  +Q     +NT +  +L  G   +  +L ++M  K + PD  +YN++I G   
Sbjct: 477 FDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCK 536

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  L+DA  +  +MV   LQP  +T+  LI+  C    + EA KL   ++    ++P   
Sbjct: 537 TGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSD-GLQPSVV 595

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LI   C  G L  A G   +M+   IE +   Y+ LI AL + GR         EM
Sbjct: 596 TYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEM 655

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            ERG  PN  TY  LI G C+E ++  A  +  EM   G   +  ++N +  G  K
Sbjct: 656 LERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGFDK 711



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 96/197 (48%), Gaps = 2/197 (1%)

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA- 206
           V+PD    N ++     + R +D   V+ EM++  ++PT+VT+ TL+     E R DEA 
Sbjct: 204 VAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEAS 263

Query: 207 LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266
           + LKE   +      +   +  +I  L   G L  A  + + M   K +  +  Y+ LI+
Sbjct: 264 MLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSK-KASSFTYNPLIT 322

Query: 267 ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326
           AL + G   +  A+  EM+  G  P  VTYNA+I G  K E  EAA     EM   G   
Sbjct: 323 ALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLP 382

Query: 327 NPISYNVILGGLCKDGK 343
           + I+YN +L G CK G 
Sbjct: 383 DLITYNSMLNGYCKAGN 399



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 112/238 (47%), Gaps = 9/238 (3%)

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP---DACSYNILIHG 161
           ++ EM    ++ T+  +NTLL+  L  G+ D    L + ME        +  +YN++I  
Sbjct: 230 VYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVISF 289

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD--EALKLKEDIMRVYNV 219
                 LE+A K+ D M +   + +  T+  LI  L     V   EAL+++   M    +
Sbjct: 290 LAREGHLENAAKLVDSM-RLSKKASSFTYNPLITALLERGFVQKVEALQME---MENEGI 345

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P    + ++I GL    ++  A     EM    +  D   Y+S+++   KAG   E   
Sbjct: 346 MPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALW 405

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           +L +++  G  P  +TYN LI G+C+    E A  + +EM ++GC  +  +Y +++ G
Sbjct: 406 LLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNG 463


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 166/338 (49%), Gaps = 27/338 (7%)

Query: 13  RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ 72
           R Q+ P+L  + F               + FR  + H +L+I  L +   FD   +IL +
Sbjct: 72  REQRRPELGFRFF---------IWTTRRRSFRSWVTH-NLVIDMLAKDDGFDTYWKILEE 121

Query: 73  LKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132
           LK+    +P    F  +I  Y ++ + E+A++ F +M  F  +  V  +N++L+  +   
Sbjct: 122 LKNSNIQIPPPT-FSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQ-- 178

Query: 133 KLDRMKELF--------QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ 184
                KE+F        Q+++   +P+  ++ IL++G   + + +DA K+FDEM ++ + 
Sbjct: 179 -----KEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIP 233

Query: 185 PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
           P  + +  ++ GLC   R D+  +L  + M+V    PD     +L+ G C +G++  A  
Sbjct: 234 PNTMIYTIILSGLCQAKRTDDVHRLL-NTMKVSGCCPDSITCNALLDGFCKLGQIDEAFA 292

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           + +   ++   +    YSSLI  LF+A R +E     ++M + G +P+ V Y  LI GFC
Sbjct: 293 LLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFC 352

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +    + A  +L++M  +G   +   YN ++ G C  G
Sbjct: 353 EVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVG 390



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 148/311 (47%), Gaps = 22/311 (7%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L RAK +DE+Q+   ++     I P  +++  +I  +    +++ AL M ++M
Sbjct: 309 YSSLIDGLFRAKRYDEVQEWCRKM-FKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDM 367

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIHGCVVSRRL 168
           +   +      +N L+      G LD+ + L  +I +    P +C+Y ILI G   +  L
Sbjct: 368 TQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLL 427

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA----------------LKLKED 212
           ++A ++F++M      P+++TF  LI GLC    ++EA                L+L + 
Sbjct: 428 DEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQG 487

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
             RV     D     ++++ LC  G +  A  +  ++    +  D   Y+ LI+   KA 
Sbjct: 488 ADRVM----DTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAK 543

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
             N    + +E++ +G  P+SVTY  LI GF + +  E AF +LD+M   GC  +   Y 
Sbjct: 544 NINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYK 603

Query: 333 VILGGLCKDGK 343
            ++   C+ GK
Sbjct: 604 CLMTWSCRKGK 614



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 90/190 (47%), Gaps = 1/190 (0%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           ++N++I         +  WK+ +E+    +Q    TF  LI         ++A++     
Sbjct: 98  THNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVE-SFGK 156

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M+ +  KPD   + S++  +       LAL V  +M++     +   +  L++ L K G+
Sbjct: 157 MKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGK 216

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            ++   +  EM ++G  PN++ Y  ++SG C+ +  +    +L+ M   GC  + I+ N 
Sbjct: 217 TDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNA 276

Query: 334 ILGGLCKDGK 343
           +L G CK G+
Sbjct: 277 LLDGFCKLGQ 286



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 139/337 (41%), Gaps = 50/337 (14%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I  + R  + DE +QI +Q++ +    P  + F  +I    +A  LE A  +F +M
Sbjct: 414 YTILICGMCRNGLLDEARQIFNQME-NLGCSPSIMTFNALIDGLCKAGELEEARHLFYKM 472

Query: 110 -------------SSFNVQMTVKFFNTLLNPKLTCGK-LDRMKELFQIMEKYVSPDACSY 155
                           +  M      T++      G  L   K L Q+ +  V PD  +Y
Sbjct: 473 EIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTY 532

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N+LI+G   ++ +  A+K+F E+  +   P  VT+GTLI G     R ++A ++ + +++
Sbjct: 533 NVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVK 592

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLAL---------------------------GVKEE 248
                P   V+  L+   C  G+LS+A                            G  E+
Sbjct: 593 -NGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHFEKGELEK 651

Query: 249 MVRDKIEMDAGI-------YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
            VR  +EM+  +       Y+  +  L +A R  E   I   +KE     N  +   LI+
Sbjct: 652 AVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSCVMLIN 711

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           G CK+ + E A  I     +KG    P   N +L  L
Sbjct: 712 GLCKDGNLEMAVDIFLYTLEKGFMLMPRICNQLLRSL 748


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 139/264 (52%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    +  +I  + +A  LE A ++ D M S      V  +N ++    + GKLD   E+
Sbjct: 136 PDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEI 195

Query: 141 FQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ +++    P   +Y ILI   ++   ++ A K+ DEM+ + L+P  +T+  +I G+C 
Sbjct: 196 FEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCK 255

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E+ VD+A +L    +     KPD   +  L++ L + G+ S    +  EM+    + +  
Sbjct: 256 EMMVDKAFELLRS-LSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVV 314

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            +S LI  L + G+  E   +L+ MKE+G KP++  Y+ LI+GFC+E   + A   L+ M
Sbjct: 315 THSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYM 374

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
              GC  + ++YN I+ GLC+ GK
Sbjct: 375 ISDGCLPDIVNYNTIMAGLCRTGK 398



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 128/239 (53%), Gaps = 5/239 (2%)

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           M D+  + +V +  K      N +   GK  R+ E   I+E+Y  PD  +YN LI G + 
Sbjct: 95  MVDKGYTPDVILCTKLIKGFFNSR-NIGKATRVME---ILERYGKPDVFAYNALISGFIK 150

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + +LE+A +V D M  R   P +VT+  +I   C   ++D AL++ E++++  N +P   
Sbjct: 151 ANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLK-DNCEPTVI 209

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LI+     G + +A+ + +EM+   +E D   Y+++I  + K    ++   +L+ +
Sbjct: 210 TYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSL 269

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             RGCKP+ +TYN L+        +     ++ EM   GCK N +++++++G LC+DGK
Sbjct: 270 SSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGK 328



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 156/333 (46%), Gaps = 38/333 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y+ +I+   +A   +   ++L ++K     +P  + +  +IG +     L+ AL++
Sbjct: 137 DVFAYNALISGFIKANQLENANRVLDRMKSRG-FLPDVVTYNIMIGSFCSRGKLDLALEI 195

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIHG--- 161
           F+E+   N + TV  +  L+   +  G +D  MK L +++ K + PD  +YN +I G   
Sbjct: 196 FEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCK 255

Query: 162 -------------------------------CVVSR-RLEDAWKVFDEMVKRRLQPTLVT 189
                                           ++SR +  +  K+  EM+    +P +VT
Sbjct: 256 EMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVT 315

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
              LI  LC + +V+EA+ L    M+   +KPD   +  LI G C  G L LA    E M
Sbjct: 316 HSILIGTLCRDGKVEEAVNLLRS-MKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYM 374

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           + D    D   Y+++++ L + G+ ++   + +++ E GC PN  +YN L S      D 
Sbjct: 375 ISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDR 434

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             A  ++ ++ ++G   + I+YN ++  LC+DG
Sbjct: 435 YRALEMILKLLNQGIDPDEITYNSLISCLCRDG 467



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 147/305 (48%), Gaps = 7/305 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARL 98
           K    + L Y+ II  + +  M D+  ++L  L   +R    +II  N++      R + 
Sbjct: 237 KGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLS--SRGCKPDIITYNILLRTLLSRGKW 294

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
            E   ++  EM S   +  V   + L+      GK++    L + M EK + PDA  Y+ 
Sbjct: 295 SE-GEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDP 353

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G     RL+ A +  + M+     P +V + T++ GLC   + D+AL++ E +  V 
Sbjct: 354 LIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEV- 412

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
              P+   + +L   L + G+   AL +  +++   I+ D   Y+SLIS L + G  +E 
Sbjct: 413 GCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEA 472

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +L +M+    +PN V+YN ++ G CK      A  +L  M +KGC+ N  +Y +++ G
Sbjct: 473 IELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEG 532

Query: 338 LCKDG 342
           +   G
Sbjct: 533 IGFSG 537



 Score = 44.3 bits (103), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 77/181 (42%), Gaps = 8/181 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKH---DTRIVPKEIIFCNVIGFYGRARLLERA 102
           ++++Y+ I+  L R    D+  ++  +L        +     +F  +     R R LE  
Sbjct: 382 DIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMI 441

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHG 161
           L++ ++     +      +N+L++     G +D   EL   M+     P+  SYNI++ G
Sbjct: 442 LKLLNQ----GIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLG 497

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                R  DA +V   M ++  QP   T+  LI G+       EA++L   +  +  +  
Sbjct: 498 LCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGFSGLRAEAMELANSLHGMNAISE 557

Query: 222 D 222
           D
Sbjct: 558 D 558


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/254 (34%), Positives = 126/254 (49%), Gaps = 3/254 (1%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVS 149
           GF  + R+ ++AL    E  S   +     +NTL+N     G      E+   M    + 
Sbjct: 282 GFCKQGRI-DQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLD 340

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PD  +YN LI G      +E+A K+ D+MV R   P  VT+  +I  LC E RVDEA ++
Sbjct: 341 PDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEI 400

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
              ++    + PD   F SLI+GLC       A+ + EEM       D   Y+ LI +L 
Sbjct: 401 AR-LLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLC 459

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
            + +  E   +LKEM+  GC  N V YN LI GFCK +  E A  I DEM  +G   + +
Sbjct: 460 SSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSV 519

Query: 330 SYNVILGGLCKDGK 343
           +YN ++ GLCK  +
Sbjct: 520 TYNTLIDGLCKSKR 533



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 128/250 (51%), Gaps = 2/250 (0%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DAC 153
           +A  +  A+ M +EM S+ +      F T++   +  G LD    + + M +Y  P    
Sbjct: 215 KAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDV 274

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           + N+LI+G     R++ A     E V    +P   T+ TL+ GLC       A+++  D 
Sbjct: 275 TVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVV-DA 333

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M +  + PD   + SLI GLC +GE+  A+ + ++MV      +A  Y+++IS+L K  R
Sbjct: 334 MLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENR 393

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +E   I + +  +G  P+  T+N+LI G C   + ++A  + +EM  KGC+ +  +YN+
Sbjct: 394 VDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNM 453

Query: 334 ILGGLCKDGK 343
           ++  LC   K
Sbjct: 454 LIDSLCSSRK 463



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 129/246 (52%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
           +E A+++ D+M S +       +N +++      ++D   E+ +++  K + PD C++N 
Sbjct: 359 IEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNS 418

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G  +S   + A  +F+EM  +  +P   T+  LI  LC   +++EAL L ++ M + 
Sbjct: 419 LIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKE-MELN 477

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
               +  ++ +LI G C    +  A  + +EM    +  D+  Y++LI  L K+ R  + 
Sbjct: 478 GCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDA 537

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++ +M   G +P+  TYN+L++ FCK  D + A  I+  M   GC  + ++Y  ++ G
Sbjct: 538 AQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISG 597

Query: 338 LCKDGK 343
           LCK G+
Sbjct: 598 LCKAGR 603



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 141/298 (47%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y+ II+ L +    DE  +I   L     I+P    F ++I     +   + A+ +
Sbjct: 377 NAVTYNAIISSLCKENRVDEATEIARLLTSKG-ILPDVCTFNSLIQGLCLSSNHKSAMDL 435

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           F+EM     +     +N L++   +  KL+    L + ME    + +   YN LI G   
Sbjct: 436 FEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCK 495

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           ++R+E+A ++FDEM  + +    VT+ TLI GLC   RV++A +L  D M +  ++PD  
Sbjct: 496 NKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLM-DQMIMEGLRPDKF 554

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SL+   C  G++  A  + + M       D   Y++LIS L KAGR      +L+ +
Sbjct: 555 TYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSI 614

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + +G       YN +I    K      A  +  EM DK    + I+Y ++  GLC  G
Sbjct: 615 QMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGG 672



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 2/244 (0%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNIL 158
           + A+++ D M    +   +  +N+L++     G+++  +K L Q++ +  SP+A +YN +
Sbjct: 325 KHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAI 384

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I       R+++A ++   +  + + P + TF +LI GLCL      A+ L E+ M+   
Sbjct: 385 ISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEE-MKGKG 443

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
            +PD   +  LI  LC+  +L  AL + +EM  +    +  IY++LI    K  R  E  
Sbjct: 444 CRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAE 503

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            I  EM+ +G   +SVTYN LI G CK +  E A  ++D+M  +G + +  +YN +L   
Sbjct: 504 EIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHF 563

Query: 339 CKDG 342
           CK G
Sbjct: 564 CKTG 567



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 157/366 (42%), Gaps = 79/366 (21%)

Query: 13  RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ 72
           R Q D   AL++F   +  PN   +  +         Y+ I+ KLG+A  F+ M+++L +
Sbjct: 72  RRQTDEVAALRVFNWASKQPNFVPSSSV---------YEEILRKLGKAGSFEYMRRVLEE 122

Query: 73  LKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132
           +K       + I F   +  YG+        +++DE+                      G
Sbjct: 123 MKLSGCEFDRGI-FLIFVESYGK-------FELYDEV---------------------VG 153

Query: 133 KLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
            +  M++ ++I      PD   YN+L++  V + +L+        MV+RR++  + TF  
Sbjct: 154 IVKVMEDEYRI-----KPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNI 208

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR- 251
           LI  LC   +V  A+ + E+ M  Y + PD   F ++++G    G L  AL +KE+MV  
Sbjct: 209 LIKALCKAHQVRPAILMMEE-MPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEY 267

Query: 252 ----------------------------------DKIEMDAGIYSSLISALFKAGRKNEF 277
                                             +    D   Y++L++ L K G     
Sbjct: 268 GCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHA 327

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++  M   G  P+  TYN+LISG CK  + E A  ILD+M  + C  N ++YN I+  
Sbjct: 328 MEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISS 387

Query: 338 LCKDGK 343
           LCK+ +
Sbjct: 388 LCKENR 393



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 142/299 (47%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y+ +I+ L +    +E  +IL Q+       P  + +  +I    +   ++ A ++
Sbjct: 342 DIYTYNSLISGLCKLGEIEEAVKILDQMV-SRDCSPNAVTYNAIISSLCKENRVDEATEI 400

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
              ++S  +   V  FN+L+             +LF+ M+ K   PD  +YN+LI     
Sbjct: 401 ARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCS 460

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           SR+LE+A  +  EM        +V + TLI G C   R++EA ++ ++ M +  V  D  
Sbjct: 461 SRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDE-MELQGVSRDSV 519

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI GLC    +  A  + ++M+ + +  D   Y+SL++   K G   +   I++ M
Sbjct: 520 TYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTM 579

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              GC P+ VTY  LISG CK    + A  +L  +  KG    P +YN ++  L K  +
Sbjct: 580 TSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNR 638


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 162/329 (49%), Gaps = 38/329 (11%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS 110
           + ++  L + K ++E Q +L Q       +P E+ +  V+  Y +    E AL+++DEM 
Sbjct: 454 NTVLYNLCKEKRYEEAQGLL-QSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMI 512

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
              +  ++  +NTL+      G+L + + +L ++MEK + PD  +YNI+IH       LE
Sbjct: 513 EKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLE 572

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           +A++  ++MV+   +P +VT  TL+ GLCL  ++D+ALKL E  +     K D   + +L
Sbjct: 573 NAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVE-KGKKVDVITYNTL 631

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           I+ +C  G++  AL    +M    ++ DA  Y+ ++SAL +AGR  E   +L ++ E G 
Sbjct: 632 IQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGT 691

Query: 290 ----------KPNSV-------------------------TYNALISGFCKEEDFEAAFT 314
                     KP+SV                          Y  L++G C    F+ A  
Sbjct: 692 LSQSFSSPLLKPSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKA 751

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           ILDEM  KG   +  +Y  ++ GL K  K
Sbjct: 752 ILDEMMQKGMSVDSSTYITLMEGLVKRQK 780



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 151/309 (48%), Gaps = 2/309 (0%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           EA     F  +L  Y+++   L +A   DE  ++  +++    ++P  + +  +     +
Sbjct: 298 EAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFK 357

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACS 154
            R    AL++ +EM    V+ T+   N ++      G+L+  +  L ++ +  ++PD  +
Sbjct: 358 CRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVIT 417

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YN LIH    +  +  A+ + DEMV+R L+    T  T++Y LC E R +EA  L +   
Sbjct: 418 YNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPP 477

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           +     PD   + +++           AL + +EM+  K+      Y++LI  L + GR 
Sbjct: 478 Q-RGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRL 536

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            E    L E+ E+G  P+  TYN +I  +CKE D E AF   ++M +   K + ++ N +
Sbjct: 537 KEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTL 596

Query: 335 LGGLCKDGK 343
           + GLC +GK
Sbjct: 597 MNGLCLNGK 605



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 122/267 (45%), Gaps = 1/267 (0%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           R+ P    F  ++  +     L  AL     M  F +      +NTLLN     G L   
Sbjct: 199 RLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEA 258

Query: 138 KELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           + L   M+K  V+P   +YN L+        ++ A KV + M     +P L T+  L  G
Sbjct: 259 RALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAG 318

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC   +VDEA +LK+++ R+  + PD   + +L          S AL + EEM    ++ 
Sbjct: 319 LCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKA 378

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
               ++ +I  L K G        L +M + G  P+ +TYN LI   CK  +   A+T++
Sbjct: 379 TLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLM 438

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
           DEM  +G K +  + N +L  LCK+ +
Sbjct: 439 DEMVRRGLKLDTFTLNTVLYNLCKEKR 465



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 146/304 (48%), Gaps = 3/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  +  L+ ++++I  L +    +     L+++  D  + P  I +  +I  + +A  + 
Sbjct: 374 KGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDG-LAPDVITYNTLIHAHCKAGNIA 432

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
           +A  + DEM    +++     NT+L       + +  + L Q   ++   PD  SY  ++
Sbjct: 433 KAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVM 492

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
                    E A +++DEM++++L P++ T+ TLI GL    R+ EA+    ++M    +
Sbjct: 493 AAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELME-KGL 551

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   +  +I   C  G+L  A     +MV +  + D    ++L++ L   G+ ++   
Sbjct: 552 VPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALK 611

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + +   E+G K + +TYN LI   CK+ D + A     +M  +G + +  +YNV+L  L 
Sbjct: 612 LFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALS 671

Query: 340 KDGK 343
           + G+
Sbjct: 672 EAGR 675



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 37/206 (17%)

Query: 174 VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGL 233
            F  +V  RL P   TF  L++  C +  + +AL      M+ + + PD   + +L+   
Sbjct: 191 AFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALS-TLSTMQGFGLSPDAVTYNTLLNAH 249

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           C  G L  A  +   M +D +      Y++L+SA  + G   +   +++ M   G +P+ 
Sbjct: 250 CRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDL 309

Query: 294 VTYNALISGFCKEEDFEAAF------------------------------------TILD 317
            TYN L +G C+    + AF                                     +L+
Sbjct: 310 WTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLE 369

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
           EM +KG KA  +++N+++ GLCKDG+
Sbjct: 370 EMREKGVKATLVTHNIVIKGLCKDGE 395



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 111/260 (42%), Gaps = 36/260 (13%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I  L R     E    L++L  +  +VP +  +  +I  Y +   LE A Q  ++M
Sbjct: 523 YNTLIKGLSRMGRLKEAIDKLNELM-EKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKM 581

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRL 168
              + +  V   NTL+N     GKLD+  +LF+  +EK    D  +YN LI        +
Sbjct: 582 VENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDV 641

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL----KLKED--IMRVYN---V 219
           + A   F +M  R LQP   T+  ++  L    R +EA     KL E   + + ++   +
Sbjct: 642 DTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQSFSSPLL 701

Query: 220 KPDG-------------------------QVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
           KP                           + +  L+ GLC  G+   A  + +EM++  +
Sbjct: 702 KPSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKAILDEMMQKGM 761

Query: 255 EMDAGIYSSLISALFKAGRK 274
            +D+  Y +L+  L K  ++
Sbjct: 762 SVDSSTYITLMEGLVKRQKR 781


>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
          Length = 1025

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 159/318 (50%), Gaps = 12/318 (3%)

Query: 36  EAHPLKPFRYNLLHYD-----LIITKLGRAKMFDEMQQILHQLK-----HDTRIVPKEII 85
           EA  +K     L ++D      ++ +L ++      Q++   L+     HD   +   + 
Sbjct: 138 EASAVKAIGQGLYYFDSGALAALLKELNKSGHVRRAQELFDWLRGLDDSHDLYPLCNTMT 197

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIM 144
           +  +I   G  + L RAL++  EM S  +Q  V  ++ L+N  +   +LD   +++ Q++
Sbjct: 198 YTTMISQCGTQQQLRRALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQML 257

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
            +  +P+  +YN LI     +   E+A +V D + ++ + P + T+ T+I    +  +  
Sbjct: 258 AEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQ 317

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           EAL++ E ++     +P    + +LI      G+L  AL + ++MVR   E +   YSSL
Sbjct: 318 EALRIYERML-AAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSL 376

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           ISA  KAGR      + +EM   GC+PN VTYN+LI+   +   +E A  + ++M  +GC
Sbjct: 377 ISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRGC 436

Query: 325 KANPISYNVILGGLCKDG 342
           K + +++  ++    + G
Sbjct: 437 KPDAVTFGGLIAAYDRAG 454



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 14/222 (6%)

Query: 132 GKLDRMKELFQIMEK-------YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ 184
           G + R +ELF  +         Y   +  +Y  +I  C   ++L  A ++  EM  R +Q
Sbjct: 168 GHVRRAQELFDWLRGLDDSHDLYPLCNTMTYTTMISQCGTQQQLRRALELVAEMRSRGIQ 227

Query: 185 PTLVTFGTLIYGLCLELRVDEALKLKEDIMR---VYNVKPDGQVFASLIKGLCAVGELSL 241
             + T+  L+  +C++      L L  D+ R        P+   + +LI      G    
Sbjct: 228 CNVHTYSALM-NVCIK---GNELDLALDVYRQMLAEGCTPNLVTYNTLIDVYGKTGAWEE 283

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           A+ V + + R  I+ +   Y+++I A   +G+  E   I + M   G +P + TY ALIS
Sbjct: 284 AIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTATTYTALIS 343

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + K    + A  I  +M  +GC+ N I+Y+ ++    K G+
Sbjct: 344 AYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGR 385


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 148/290 (51%), Gaps = 3/290 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ II    +  M  E  ++L         VP ++ +C++I        +ERAL++F+E 
Sbjct: 293 YNTIIDGYCKISMVQEATELLKDAVFKG-FVPDQVTYCSLINGLCAEGDVERALELFNEA 351

Query: 110 SSFNVQMTVKFFNTLLNPKLTCG-KLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168
            +  ++  +  +N+L+      G  L  ++ + ++ E+   PD  +YNI+I+G      +
Sbjct: 352 QAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNI 411

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            DA  V ++ + +   P + TF TLI G C  L++D AL+L E  M  Y + PD   + S
Sbjct: 412 SDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVER-MWEYGIAPDTITYNS 470

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           ++ GLC  G+++      +EM+      +   Y+ LI    ++ +  E   ++ +M + G
Sbjct: 471 VLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEG 530

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             P++V++N LI GFC+  D E A+ +  ++ +KG  A   ++N ++G  
Sbjct: 531 LHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAF 580



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 146/299 (48%), Gaps = 5/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I  L +  M  E    L ++  +   +P +  +  +I  Y +  +++ A ++
Sbjct: 254 DVVTYNTLIRGLCKKSMPQEAMHYLRRMM-NQGCLPDDFTYNTIIDGYCKISMVQEATEL 312

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             +            + +L+N     G ++R  ELF +   K + PD   YN L+ G  +
Sbjct: 313 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 372

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED-IMRVYNVKPDG 223
              +  A +V +EM +    P + T+  +I GLC    + +A  +  D IM+ Y   PD 
Sbjct: 373 QGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGY--LPDV 430

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             F +LI G C   +L  AL + E M    I  D   Y+S+++ L KAG+ NE     +E
Sbjct: 431 FTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQE 490

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           M  +GC PN +TYN LI  FC+    E A  ++ +M  +G   + +S+N ++ G C++G
Sbjct: 491 MILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNG 549



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 133/251 (52%), Gaps = 7/251 (2%)

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK---LDRMKELFQIMEKYVSPDA 152
           A  L  A+++ D M ++ V   V + NTL+  +  C K    + M  L ++M +   PD 
Sbjct: 234 AGRLPEAVRLVDGMRAYAVPDVVTY-NTLI--RGLCKKSMPQEAMHYLRRMMNQGCLPDD 290

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN +I G      +++A ++  + V +   P  VT+ +LI GLC E  V+ AL+L  +
Sbjct: 291 FTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNE 350

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
             +   +KPD  V+ SL+KGLC  G +  AL V  EM  +    D   Y+ +I+ L K G
Sbjct: 351 -AQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMG 409

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
             ++   ++ +   +G  P+  T+N LI G+CK    ++A  +++ M + G   + I+YN
Sbjct: 410 NISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYN 469

Query: 333 VILGGLCKDGK 343
            +L GLCK GK
Sbjct: 470 SVLNGLCKAGK 480



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 142/300 (47%), Gaps = 6/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL  Y++ I  L  A    E  +++  ++     VP  + +  +I    +  + + A+  
Sbjct: 220 NLFTYNIWIRGLCEAGRLPEAVRLVDGMR--AYAVPDVVTYNTLIRGLCKKSMPQEAMHY 277

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDACSYNILIHGCV 163
              M +         +NT+++       +    EL +  + + +V PD  +Y  LI+G  
Sbjct: 278 LRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFV-PDQVTYCSLINGLC 336

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
               +E A ++F+E   + ++P +V + +L+ GLCL+  +  AL++  + M      PD 
Sbjct: 337 AEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNE-MAEEGCHPDI 395

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
           Q +  +I GLC +G +S A  V  + +      D   +++LI    K  + +    +++ 
Sbjct: 396 QTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVER 455

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M E G  P+++TYN++++G CK            EM  KGC  NPI+YN+++   C+  K
Sbjct: 456 MWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNK 515



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           FNTL++      KLD   +L + M +Y ++PD  +YN +++G   + ++ +  + F EM+
Sbjct: 433 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 492

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
            +   P  +T+  LI   C   +++EA K+    M    + PD   F +LI G C  G+L
Sbjct: 493 LKGCHPNPITYNILIENFCRSNKMEEASKVIVK-MSQEGLHPDAVSFNTLIYGFCRNGDL 551

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA--ILKEMKERGCKPNSVTYN 297
             A  + +++        A  +++LI A   +G+ N   A  I  EM  +G + +S TY 
Sbjct: 552 EGAYLLFQKLEEKGYSATADTFNTLIGAF--SGKLNMHMAEKIFDEMLSKGHRADSYTYR 609

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKG 323
            LI G CK  + + A+  L EM  KG
Sbjct: 610 VLIDGSCKTANVDRAYMHLVEMIKKG 635



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 7/210 (3%)

Query: 132 GKLDRMKELFQIMEKYVSPDAC-SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           G+L    + F+ M+ +  P A  +YN ++   V +   + A KV+  M+   + P L T 
Sbjct: 64  GRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTH 123

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
              +   CL  R   AL+L   +     V      + +++ GL A G    A  + ++M+
Sbjct: 124 TIRLRSFCLTARPHIALRLLRALPHRGAV-----AYCTVVCGLYAHGHTHDARQLFDQML 178

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
              +  +   ++ ++ AL K G   E   +L ++ +RG   N  TYN  I G C+     
Sbjct: 179 HTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLP 238

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCK 340
            A  ++D M       + ++YN ++ GLCK
Sbjct: 239 EAVRLVDGMRAYAV-PDVVTYNTLIRGLCK 267



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 7/229 (3%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACS--YNILIHGCVVSRRLEDAWKV 174
           TV  +  L+ P  + G++D +          +SP      Y   I     + RL DA   
Sbjct: 13  TVPAYCALIRPLASAGRVDAVDAAVASARSRLSPATIHPLYVASIRAYARAGRLRDAVDA 72

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
           F+ M      P    +  ++  L      D+A K+   ++    V PD       ++  C
Sbjct: 73  FERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAA-GVSPDLHTHTIRLRSFC 131

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
                 +AL     ++R      A  Y +++  L+  G  ++   +  +M      PN  
Sbjct: 132 LTARPHIAL----RLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLA 187

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +N ++   CK  D   A  +L ++  +G   N  +YN+ + GLC+ G+
Sbjct: 188 AFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGR 236



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 90/180 (50%), Gaps = 6/180 (3%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LK    N + Y+++I    R+   +E  +++ ++  +  + P  + F  +I  + R   L
Sbjct: 493 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEG-LHPDAVSFNTLIYGFCRNGDL 551

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMKE-LF-QIMEKYVSPDACSYN 156
           E A  +F ++       T   FNTL+      GKL+  M E +F +++ K    D+ +Y 
Sbjct: 552 EGAYLLFQKLEEKGYSATADTFNTLIGA--FSGKLNMHMAEKIFDEMLSKGHRADSYTYR 609

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           +LI G   +  ++ A+    EM+K+   P++ TFG +I  L +  RV +A+ +   ++++
Sbjct: 610 VLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKI 669


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 133/278 (47%), Gaps = 40/278 (14%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL 158
           L+ A+++F E+   NV      +N LL      G++   ++LF  M    +PD  +Y IL
Sbjct: 244 LDEAIELFQELPHKNVCS----YNILLKALCDAGRVKDARQLFDEMAS--APDVVTYGIL 297

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI----- 213
           IHG      LE+A K+ DEMV   ++P    + +++  LC +  + +AL++ ED+     
Sbjct: 298 IHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKV 357

Query: 214 -----------------------------MRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
                                        M+   +  DG  + ++I GLC   EL  A  
Sbjct: 358 ILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEK 417

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           + +EM   ++++D   Y+ LI    K G+  E   +   M +RG  PN VTY AL  G C
Sbjct: 418 LLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLC 477

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           K+ D +AA  +L EM +KG + N  +YN ++ GLCK G
Sbjct: 478 KQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAG 515



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 132/266 (49%), Gaps = 2/266 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           + P   ++ +V+        +  AL++ ++M    V +    + T+L+     G L   +
Sbjct: 322 VEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSAR 381

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
             F  M+ K ++ D  +Y  +I+G   +  LE+A K+  EM  RRL    VT+  LI G 
Sbjct: 382 RWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGY 441

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C   ++ EA ++  + M    V P+   + +L  GLC  G++  A  +  EM    +E++
Sbjct: 442 CKRGKMAEAFQM-HNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELN 500

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           A  Y+SLI+ L KAG   +    + +M     KP+  TY  LI   CK  D + A ++L 
Sbjct: 501 ACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQ 560

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
           EM DKG K   ++YNV++ G C  G+
Sbjct: 561 EMLDKGIKPTIVTYNVLMNGFCMSGR 586



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 115/210 (54%), Gaps = 7/210 (3%)

Query: 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           LD   ELFQ +      + CSYNIL+     + R++DA ++FDEM      P +VT+G L
Sbjct: 244 LDEAIELFQELPH---KNVCSYNILLKALCDAGRVKDARQLFDEMAS---APDVVTYGIL 297

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I+G C    ++ A+KL  D M    V+P+  V+ S++  LC  G +S AL V E+MV+ K
Sbjct: 298 IHGHCALGELENAVKLL-DEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRK 356

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           + +D  +Y++++S     G          EM+ +G   + VTY  +I+G C+  + E A 
Sbjct: 357 VILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAE 416

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +L EM  +    + ++Y V++ G CK GK
Sbjct: 417 KLLQEMWARRLDVDEVTYTVLIDGYCKRGK 446



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 136/264 (51%), Gaps = 4/264 (1%)

Query: 78  RIVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           +++  E ++  V+ GF  +  L+  A + FDEM    +      + T++N      +L+ 
Sbjct: 356 KVILDEALYTTVLSGFCNKGDLVS-ARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEE 414

Query: 137 MKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
            ++L Q M  + +  D  +Y +LI G     ++ +A+++ + MV+R + P +VT+  L  
Sbjct: 415 AEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTD 474

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           GLC +  V  A +L  + M    ++ +   + SLI GLC  G L  A+    +M    ++
Sbjct: 475 GLCKQGDVQAANELLHE-MSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLK 533

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI AL K+G  +   ++L+EM ++G KP  VTYN L++GFC     E    +
Sbjct: 534 PDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKL 593

Query: 316 LDEMGDKGCKANPISYNVILGGLC 339
           LD M +K    N  +YN ++   C
Sbjct: 594 LDWMLEKNIHPNAATYNSLMKQYC 617



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 131/295 (44%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L RA   +E +++L ++    R+   E+ +  +I  Y +   +  A QM + M
Sbjct: 399 YTTMINGLCRAVELEEAEKLLQEMW-ARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAM 457

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRL 168
               V   V  +  L +     G +    EL   M  K +  +AC+YN LI+G   +  L
Sbjct: 458 VQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYL 517

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E A +   +M    L+P + T+ TLI  LC    +D A  L ++++    +KP    +  
Sbjct: 518 EQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLD-KGIKPTIVTYNV 576

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ G C  G +     + + M+   I  +A  Y+SL+              I K M+ R 
Sbjct: 577 LMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRD 636

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             PN  TYN LI G CK  + + A    DEM  KG +    SY+ ++  L K  K
Sbjct: 637 VGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKK 691



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 134/284 (47%), Gaps = 16/284 (5%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           + FDEMQ+          +    + +  +I    RA  LE A ++  EM +  + +    
Sbjct: 382 RWFDEMQR--------KGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVT 433

Query: 121 FNTLLNPKLTCGKLDRMKELFQI----MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFD 176
           +  L++     GK   M E FQ+    +++ V+P+  +Y  L  G      ++ A ++  
Sbjct: 434 YTVLIDGYCKRGK---MAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLH 490

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
           EM  + L+    T+ +LI GLC    +++A++   D M    +KPD   + +LI  LC  
Sbjct: 491 EMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMAD-MDTACLKPDVYTYTTLIDALCKS 549

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           G+L  A  + +EM+   I+     Y+ L++    +GR      +L  M E+   PN+ TY
Sbjct: 550 GDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATY 609

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           N+L+  +C E + ++   I   M  +    N  +YN+++ G CK
Sbjct: 610 NSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCK 653



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 134/275 (48%), Gaps = 3/275 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +   L +        ++LH++  +  +      + ++I    +A  LE+A++ 
Sbjct: 465 NVVTYTALTDGLCKQGDVQAANELLHEMS-NKGLELNACTYNSLINGLCKAGYLEQAMRT 523

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
             +M +  ++  V  + TL++     G LDR   L Q +++K + P   +YN+L++G  +
Sbjct: 524 MADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 583

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S R+E   K+ D M+++ + P   T+ +L+   C+E  +    ++ +  MR  +V P+  
Sbjct: 584 SGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKG-MRSRDVGPNEN 642

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LIKG C    +  AL   +EM++    + A  YS+LI  L K  +  E   +  +M
Sbjct: 643 TYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFHDM 702

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           ++ G    S  Y+  I     E++ E+   + DE+
Sbjct: 703 RKEGLTAESDVYDFYIDLNFNEDNLESTLALCDEL 737


>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 790

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 165/339 (48%), Gaps = 12/339 (3%)

Query: 7   RLAC-LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDE 65
           RL C + R Q D ++AL  F           A     +R++ + Y  ++  L + ++   
Sbjct: 165 RLVCAVLRSQDDERIALDFF---------YWADRQWRYRHDAIVYYTMLDILSKTRLCQG 215

Query: 66  MQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125
            ++IL +L     I      F  V+  Y RA +L  AL++   M    V+  +   NT +
Sbjct: 216 ARRIL-RLMTRRGIERSPEAFSYVMVSYSRAGMLRNALRILTLMQKAGVEPDLSICNTAI 274

Query: 126 NPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ 184
              +   KL++     + M+   + PD  SYN LI G     R++DA ++  EM  +   
Sbjct: 275 YVLVKGNKLEKALRFLERMKVAGIEPDIVSYNCLIKGYCDVHRIDDALELIAEMPFKGCP 334

Query: 185 PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
           P  V++ T++  LC + +V+E  +L E++++  N+ PD   + +LI  L   G    AL 
Sbjct: 335 PDKVSYYTVMAFLCKDRKVEEVKRLMENMVQNSNLIPDQVTYNTLIYALSKHGHADDALV 394

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
              E       +D   YS+++ +  K    ++  +++ +M  +GC P+ VTY A+I GFC
Sbjct: 395 FLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFC 454

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +    + A  +L +M   GCK N ++Y V+L GLC +GK
Sbjct: 455 RVGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGK 493



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 138/306 (45%), Gaps = 11/306 (3%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  + + Y  ++    + K  D+ + ++  + +     P  + +  +I  + R   ++
Sbjct: 402 KGFHIDKVGYSAVVDSFCKNKNIDKAKSLVIDM-YSKGCNPDVVTYTAIIDGFCRVGKID 460

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILI 159
            A +M  +M     +     +  LLN     GK    +E+  + E+ + +P+A +Y+ ++
Sbjct: 461 EAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEAREMINVSEEHWWTPNAITYSAVM 520

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR---V 216
           HG     +L +A  +  EM+++   P  V    LI  LC    V  A K  E+ +     
Sbjct: 521 HGLRREGKLSEACDLTREMIEKGFLPNPVDINLLIQSLCRNQNVVGAKKYLEECLHKGCA 580

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
            NV      F S+I G C +G+L  AL + E+M       DA  Y++L  AL K  R +E
Sbjct: 581 VNVVN----FTSVIYGFCQIGDLDAALSMLEDMYLSNKHPDAITYTTLFDALGKKSRLDE 636

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              ++ +M  +G  P  VTY A+I  FC+    +    +L++M  +  +     YN ++ 
Sbjct: 637 ASELIVKMLGKGIDPTPVTYRAVIHRFCQWGRVDDMMKLLEKMIAR--QPFKTVYNQVIE 694

Query: 337 GLCKDG 342
            LC  G
Sbjct: 695 KLCYFG 700


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 148/295 (50%), Gaps = 7/295 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ ++ +  R   F E ++I  ++     +VP  + F +++  + R R L++AL  F +M
Sbjct: 74  YNTLLVESCRRDNFSEAKEIFGEMLRQG-VVPDLVSFSSLMAVFSRNRHLDQALVYFRDM 132

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGK-LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168
             F +      +  L++     G  L+ +K   +++E+    D  +YN +++G    + L
Sbjct: 133 KKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKML 192

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            DA K+FDEMV+R   P   TF TLI+G C +  + +AL L    M   N+KPD   + +
Sbjct: 193 TDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLF-GTMTQRNIKPDIVAYNT 251

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G C VGE+  A  + + M+  KI  +   Y  LI+A    G  +E   +   M E+G
Sbjct: 252 LIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKG 311

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            KP  VT N +I G+C+  D   A   L  M  KG   + ISYN ++     DGK
Sbjct: 312 IKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLI----NDGK 362



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 135/261 (51%), Gaps = 2/261 (0%)

Query: 84  IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQ 142
           + +  +IG Y R  LLE A ++ + M+   ++ ++  +N ++N     G+  R K  L +
Sbjct: 2   VTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIE 61

Query: 143 IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR 202
           ++   +SPD  +YN L+          +A ++F EM+++ + P LV+F +L+        
Sbjct: 62  MLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRH 121

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
           +D+AL    D M+ + + PD  ++  L+ G C  G +  AL +++EM+     +D   Y+
Sbjct: 122 LDQALVYFRD-MKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYN 180

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           ++++ L K     +   +  EM ERG  P+  T+  LI G C++ +   A ++   M  +
Sbjct: 181 TILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQR 240

Query: 323 GCKANPISYNVILGGLCKDGK 343
             K + ++YN ++ G CK G+
Sbjct: 241 NIKPDIVAYNTLIDGFCKVGE 261



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 36/190 (18%)

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV- 245
           +VT+ TLI   C E  ++EA ++    M    +KP    + ++I GLC  G  + A G+ 
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNS-MADKGLKPSLFTYNAIINGLCKKGRYARAKGIL 59

Query: 246 -------------------------------KE---EMVRDKIEMDAGIYSSLISALFKA 271
                                          KE   EM+R  +  D   +SSL++   + 
Sbjct: 60  IEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRN 119

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
              ++     ++MK+ G  P++V Y  L+ G+C+  +   A  I DEM ++GC  + I+Y
Sbjct: 120 RHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAY 179

Query: 332 NVILGGLCKD 341
           N IL GLCK+
Sbjct: 180 NTILNGLCKE 189


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 167/339 (49%), Gaps = 26/339 (7%)

Query: 18  PKLALQLFKNPNPNPND-------TEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           P +   + KNP   PN          A   +  R + + +++II  L +   F+   Q+L
Sbjct: 59  PSIVTYIIKNP---PNSLLGFRFFIWASKFRRLR-SWVSHNMIIDMLIKDNGFELYWQVL 114

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK-- 128
            ++K     +  +  F  +I  Y +  ++E+A++ F+ M  F+ +  V  +NT+L+    
Sbjct: 115 KEIKRCGFSISADA-FTVLIQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHVMVR 173

Query: 129 -----LTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
                L  G  +RM +L  +      P+  +++ILI G   S + ++A ++FDEM +RR+
Sbjct: 174 KEVVLLALGIYNRMLKLNCL------PNIATFSILIDGMCKSGKTQNALQMFDEMTQRRI 227

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P  +T+  +I GLC   + D A +L    M+ +   PD   + +L+ G C +G +  AL
Sbjct: 228 LPNKITYTIIISGLCQAQKADVAYRL-FIAMKDHGCIPDSVTYNALLHGFCKLGRVDEAL 286

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
           G+ +   +D+  +D   YS LI  LF+A R  +     ++M E   KP+ + Y  ++ G 
Sbjct: 287 GLLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGL 346

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            K   F+ A  +L+EM ++G   +   YN ++ G C  G
Sbjct: 347 SKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLG 385



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 145/332 (43%), Gaps = 60/332 (18%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           +MFDEM Q         RI+P +I +  +I    +A+  + A ++F  M           
Sbjct: 217 QMFDEMTQ--------RRILPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVT 268

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
           +N LL+     G++D    L +  EK  YV  D   Y+ LI G   +RR EDA   + +M
Sbjct: 269 YNALLHGFCKLGRVDEALGLLKYFEKDRYV-LDKQGYSCLIDGLFRARRFEDAQVWYRKM 327

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
            +  ++P ++ +  ++ GL    +  +AL+L  + M    + PD   + +LIKG C +G 
Sbjct: 328 TEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNE-MTERGLVPDTHCYNALIKGYCDLGL 386

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           L  A  +  E+ ++     A  Y+ LI  + ++G   +   I  EM++ GC P+ VT+NA
Sbjct: 387 LDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNA 446

Query: 299 LISGFCKEEDFE------------------------------------------------ 310
           LI GFCK  + E                                                
Sbjct: 447 LIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLIL 506

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            A+ IL ++ D G   N I+YN+++ G CK G
Sbjct: 507 KAYNILMQLTDSGFAPNIITYNILIHGFCKAG 538



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 140/311 (45%), Gaps = 22/311 (7%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L RA+ F++  Q+ ++   +  I P  I++  ++    +A   + AL++ +EM
Sbjct: 304 YSCLIDGLFRARRFED-AQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEM 362

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIHGCVVSRRL 168
           +   +      +N L+      G LD  K L  +I +      AC+Y ILI G   S  +
Sbjct: 363 TERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLV 422

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA----------------LKLKED 212
            DA ++F+EM K    P++VTF  LI G C    +++A                L+L + 
Sbjct: 423 GDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQG 482

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
             RV     D     ++++ LC  G +  A  +  ++       +   Y+ LI    KAG
Sbjct: 483 ANRVL----DTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAG 538

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
             N    + KE++ +G  P+SVTY  LI+G       E AFT+LD++   GC      Y 
Sbjct: 539 NINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPITEVYK 598

Query: 333 VILGGLCKDGK 343
             +   C+  K
Sbjct: 599 SFMTWSCRRNK 609



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 94/190 (49%), Gaps = 1/190 (0%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           S+N++I   +     E  W+V  E+ +     +   F  LI        +++A++  E +
Sbjct: 93  SHNMIIDMLIKDNGFELYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESFE-M 151

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M+ ++ KPD   + +++  +     + LALG+   M++     +   +S LI  + K+G+
Sbjct: 152 MKDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCKSGK 211

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
                 +  EM +R   PN +TY  +ISG C+ +  + A+ +   M D GC  + ++YN 
Sbjct: 212 TQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNA 271

Query: 334 ILGGLCKDGK 343
           +L G CK G+
Sbjct: 272 LLHGFCKLGR 281


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 158/310 (50%), Gaps = 14/310 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ +I     +  +   Q++L ++  + +I P  + +  +I  + +      A ++
Sbjct: 287 NIVTYNCMIGGFCISGRWSAAQRLLQEML-ERKISPNVVTYNALINAFVKEGKFFEAAEL 345

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           +DEM    +      +N++++      +LD  +++F +M  K  SPD  ++  LI G   
Sbjct: 346 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCG 405

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           ++R++D  ++  EM +R L    VT+ TLI+G CL   ++ AL L + ++    V PD  
Sbjct: 406 AKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMIS-SGVCPDIV 464

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG-----------IYSSLISALFKAGR 273
              +L+ GLC  G+L  AL + + M + K+++DA             Y+ LI  L   G+
Sbjct: 465 TCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGK 524

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   + +EM  RG  P+++TY+++I G CK+   + A  +   MG K    N +++N 
Sbjct: 525 FLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNT 584

Query: 334 ILGGLCKDGK 343
           ++ G CK G+
Sbjct: 585 LINGYCKAGR 594



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 83/247 (33%), Positives = 127/247 (51%), Gaps = 7/247 (2%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           LE A+ +F +M       +V  FN L+   +   + D +  L+Q ME K +  D  S+ I
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI       +L  A   F ++ K  L P +VTF TL++GLCL+ RV EAL L   I R  
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICR-- 179

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
              PD   F +L+ GLC  G +  A+ + + MV + ++ D   Y + +  + K G     
Sbjct: 180 ---PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSA 236

Query: 278 PAILKEMKE-RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
             +L++M+E    KPN V Y+A+I G CK+     +  +  EM DKG   N ++YN ++G
Sbjct: 237 LNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIG 296

Query: 337 GLCKDGK 343
           G C  G+
Sbjct: 297 GFCISGR 303



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 124/243 (51%), Gaps = 5/243 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIH 160
           AL  F +++   +   V  F TLL+    C  LD R+ E   +  +   PD  ++  L++
Sbjct: 135 ALSTFGKLTKLGLHPDVVTFTTLLHG--LC--LDHRVSEALDLFHQICRPDVLTFTTLMN 190

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     R+ +A  + D MV+  LQP  +T+GT + G+C       AL L   +  + ++K
Sbjct: 191 GLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIK 250

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+  +++++I GLC  G  S +  +  EM    I  +   Y+ +I     +GR +    +
Sbjct: 251 PNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRL 310

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L+EM ER   PN VTYNALI+ F KE  F  A  + DEM  +G   N I+YN ++ G CK
Sbjct: 311 LQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCK 370

Query: 341 DGK 343
             +
Sbjct: 371 QDR 373



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 139/286 (48%), Gaps = 14/286 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  +  +I     AK  D+  ++LH++     +V   + +  +I  +     L  AL +
Sbjct: 392 DVFTFTTLIDGYCGAKRIDDGMELLHEMPR-RGLVANTVTYNTLIHGFCLVGDLNAALDL 450

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY------------VSPDAC 153
             +M S  V   +   NTLL+     GKL    E+F+ M+K             V PD  
Sbjct: 451 SQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVL 510

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YNILI G +   +  +A ++++EM  R + P  +T+ ++I GLC + R+DEA ++    
Sbjct: 511 TYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVS- 569

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M   +  P+   F +LI G C  G +   L +  EM R  I  DA IY +LI    K G 
Sbjct: 570 MGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGN 629

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            N    I +EM   G  P+++T   +++GF  +E+ E A  +L+++
Sbjct: 630 INGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 675



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 142/302 (47%), Gaps = 4/302 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R ++L +  ++  L R     E   +L ++  +  + P +I +   +    +      AL
Sbjct: 179 RPDVLTFTTLMNGLCREGRVVEAVALLDRMVENG-LQPDQITYGTFVDGMCKMGDTVSAL 237

Query: 104 QMFDEMSSF-NVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
            +  +M    +++  V  ++ +++     G+      LF ++ +K + P+  +YN +I G
Sbjct: 238 NLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGG 297

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
             +S R   A ++  EM++R++ P +VT+  LI     E +  EA +L ++++    + P
Sbjct: 298 FCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLP-RGIIP 356

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   + S+I G C    L  A  +   M       D   +++LI     A R ++   +L
Sbjct: 357 NTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELL 416

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM  RG   N+VTYN LI GFC   D  AA  +  +M   G   + ++ N +L GLC +
Sbjct: 417 HEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDN 476

Query: 342 GK 343
           GK
Sbjct: 477 GK 478



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 134/305 (43%), Gaps = 14/305 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y+ +I    +    D  + + + L       P    F  +I  Y  A+ ++  +++
Sbjct: 357 NTITYNSMIDGFCKQDRLDAAEDMFY-LMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 415

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
             EM    +      +NTL++     G L+   +L Q M    V PD  + N L+ G   
Sbjct: 416 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCD 475

Query: 165 SRRLEDAWKVFDEMVKRRL-----------QPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           + +L+DA ++F  M K ++           +P ++T+  LI GL  E +  EA +L E+ 
Sbjct: 476 NGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEE- 534

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M    + PD   ++S+I GLC    L  A  +   M       +   +++LI+   KAGR
Sbjct: 535 MPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGR 594

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            ++   +  EM  RG   +++ Y  LI GF K  +   A  I  EM   G   + I+   
Sbjct: 595 VDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRN 654

Query: 334 ILGGL 338
           +L G 
Sbjct: 655 MLTGF 659



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 3/199 (1%)

Query: 19  KLALQLFKNPNPNPNDTEA-HPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 77
           K AL++FK    +  D +A HP      ++L Y+++I  L     F E +++  ++ H  
Sbjct: 480 KDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPH-R 538

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
            IVP  I + ++I    +   L+ A QMF  M S +    V  FNTL+N     G++D  
Sbjct: 539 GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDG 598

Query: 138 KELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
            ELF ++  + +  DA  Y  LI+G      +  A  +F EM+   + P  +T   ++ G
Sbjct: 599 LELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 658

Query: 197 LCLELRVDEALKLKEDIMR 215
              +  ++ A+ + ED+ R
Sbjct: 659 FWSKEELERAVAMLEDLQR 677


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 155/303 (51%), Gaps = 5/303 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + F+ N + Y  ++  L +        ++L  ++ D    P  +++  +I    + +L+ 
Sbjct: 109 QAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIE-DRSTRPNVVMYSAIIDGLCKDKLVN 167

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILI 159
            A  ++ EM +  +   V  +NTL+      G+L      L +++ K ++PD  +++ILI
Sbjct: 168 EAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILI 227

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
               + +  ++A ++F  MV+  + P + ++  +I GLC   RVDEA+ L  +++   N+
Sbjct: 228 DA--LCKEGKNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLH-KNM 284

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   + SLI GLC  G ++ AL +  EM       D   Y+SL+ AL K    ++  A
Sbjct: 285 VPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATA 344

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +  +MKERG +P   TY ALI G CK    + A  +   +  KGC  +  +Y V++ GLC
Sbjct: 345 LFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLC 404

Query: 340 KDG 342
           K+G
Sbjct: 405 KEG 407



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 145/300 (48%), Gaps = 7/300 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-IVPKEIIFCNVIGFYGRARLL 99
           +  R N++ Y  II  L + K+ +E   +  ++  D R I P  I +  +I  +  A  L
Sbjct: 144 RSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEM--DAREIFPNVITYNTLICAFCLAGQL 201

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
             A  +  EM   N+   V  F+ L++    C +    K++F  M +  V+P+  SYNI+
Sbjct: 202 MGAFSLLHEMILKNINPDVYTFSILIDA--LCKEGKNAKQIFHAMVQMGVNPNVYSYNIM 259

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G    +R+++A  +  EM+ + + P  VT+ +LI GLC   R+  AL L  + M    
Sbjct: 260 INGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNE-MHHRG 318

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
              D   + SL+  LC    L  A  +  +M    I+     Y++LI  L K GR     
Sbjct: 319 QPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQ 378

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            + + +  +GC  +  TY  +ISG CKE  F+ A  I  +M D GC  N +++ +I+  L
Sbjct: 379 ELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSL 438



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 126/252 (50%), Gaps = 9/252 (3%)

Query: 94  GRARLLERALQMFDEMSSF-NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPD 151
           G  R   + L+M ++ S+  NV M     + L   KL    ++   +L+  M+ + + P+
Sbjct: 129 GETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKL----VNEAYDLYSEMDAREIFPN 184

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +YN LI    ++ +L  A+ +  EM+ + + P + TF  LI  LC E +   A ++  
Sbjct: 185 VITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGK--NAKQIFH 242

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            ++++  V P+   +  +I GLC    +  A+ +  EM+   +  D   Y+SLI  L K+
Sbjct: 243 AMVQM-GVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKS 301

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           GR      ++ EM  RG   + VTY +L+   CK ++ + A  +  +M ++G +    +Y
Sbjct: 302 GRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTY 361

Query: 332 NVILGGLCKDGK 343
             ++ GLCK G+
Sbjct: 362 TALIDGLCKGGR 373



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 38/239 (15%)

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC- 198
           L +I++    P+  ++  L+ G  +   ++      D++V +  Q   V++GTL+ GLC 
Sbjct: 68  LGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCK 127

Query: 199 -------------LELR---------------------VDEALKLKEDIMRVYNVKPDGQ 224
                        +E R                     V+EA  L  + M    + P+  
Sbjct: 128 TGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSE-MDAREIFPNVI 186

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI   C  G+L  A  +  EM+   I  D   +S LI AL K G+  +   I   M
Sbjct: 187 TYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGKNAK--QIFHAM 244

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + G  PN  +YN +I+G CK +  + A  +L EM  K    + ++YN ++ GLCK G+
Sbjct: 245 VQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGR 303



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 1/167 (0%)

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
           +M  + ++  LVT   LI   C   ++  +  L   I+++    P+   + +L+KGLC  
Sbjct: 35  QMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGKILKL-GYXPNTITWTTLMKGLCLK 93

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           GE+   L   +++V    + +   Y +L++ L K G       +L+ +++R  +PN V Y
Sbjct: 94  GEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMY 153

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +A+I G CK++    A+ +  EM  +    N I+YN ++   C  G+
Sbjct: 154 SAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQ 200



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 51/102 (50%)

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
            + + ++M    IE +    S LI+     G+     ++L ++ + G  PN++T+  L+ 
Sbjct: 29  VISLSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMK 88

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G C + + +      D++  +  + N +SY  +L GLCK G+
Sbjct: 89  GLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGE 130


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 142/269 (52%), Gaps = 3/269 (1%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           +R +P  + FC ++G   R    +  + ++ +M    ++  +  FN L+    +C KL  
Sbjct: 73  SRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPF 132

Query: 137 MKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
               F +I +  + PD  ++  L+HG  V  R+ +A  +F +M +   +P +VTF TL+ 
Sbjct: 133 ALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMN 192

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR-DKI 254
           GLC E R+ EA+ L + +M    ++P    + +++ G+C  G+   AL +  +M     I
Sbjct: 193 GLCREGRIVEAVALLDRMME-DGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHI 251

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
             +  IYS++I +L K GR ++   +  EM+E+G  P+  TYN++I GFC    +  A  
Sbjct: 252 IPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQ 311

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +L EM ++    + ++YN ++    K+GK
Sbjct: 312 LLQEMLERKISPDVVTYNALINAFVKEGK 340



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 156/310 (50%), Gaps = 14/310 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L  Y+ +I     +  + + +Q+L ++  + +I P  + +  +I  + +      A ++
Sbjct: 289 DLFTYNSMIVGFCSSGRWSDAEQLLQEML-ERKISPDVVTYNALINAFVKEGKFFEAEEL 347

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           +DEM    +      ++++++      +LD  + +F +M  K  SP+  ++N LI G   
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCG 407

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           ++R++D  ++  EM +  L     T+ TLI+G  L   ++ AL L ++++    + PD  
Sbjct: 408 AKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMIS-SGLCPDIV 466

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG-----------IYSSLISALFKAGR 273
              +L+ GLC  G+L  AL + + M + K ++DA             Y+ LIS L   G+
Sbjct: 467 TCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGK 526

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   + +EM  RG  P+++TY+++I G CK+   + A  + D MG K    N +++  
Sbjct: 527 FLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTT 586

Query: 334 ILGGLCKDGK 343
           ++ G CK G+
Sbjct: 587 LINGYCKAGR 596



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 149/309 (48%), Gaps = 12/309 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I    +   F E +++  ++     I+P  I + ++I  + +   L+ A  M
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEML-PRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVV 164
           F  M++      +  FNTL++      ++D  M+ L ++ E  +  D  +YN LIHG  +
Sbjct: 383 FYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYL 442

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-------KEDIMRVY 217
              L  A  +  EM+   L P +VT  TL+ GLC   ++ +AL++       K+D+   +
Sbjct: 443 VGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASH 502

Query: 218 ---NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
               V+PD Q +  LI GL   G+   A  + EEM    I  D   YSS+I  L K  R 
Sbjct: 503 PFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRL 562

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +E   +   M  +   PN VT+  LI+G+CK    +    +  EMG +G  AN I+Y  +
Sbjct: 563 DEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITL 622

Query: 335 LGGLCKDGK 343
           + G  K G 
Sbjct: 623 ICGFRKVGN 631



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 144/287 (50%), Gaps = 16/287 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           NL+ ++ +I     AK  D+  ++LH++  +T +V     +  +I GFY    L   AL 
Sbjct: 394 NLITFNTLIDGYCGAKRIDDGMELLHEMT-ETGLVADTTTYNTLIHGFYLVGDL-NAALD 451

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY------------VSPDA 152
           +  EM S  +   +   +TLL+     GKL    E+F++M+K             V PD 
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YNILI G +   +  +A ++++EM  R + P  +T+ ++I GLC + R+DEA ++  D
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF-D 570

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M   +  P+   F +LI G C  G +   L +  EM R  I  +A  Y +LI    K G
Sbjct: 571 SMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVG 630

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             N    I +EM   G  P+++T   +++G   +E+ + A  +L+++
Sbjct: 631 NINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 1/177 (0%)

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
           + LEDA  +F +M++ R  P++V F  L+  +    R D  + L + + R   ++ D   
Sbjct: 58  KGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMER-KQIRCDIYS 116

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F  LIK  C+  +L  AL    ++ +  +  D   +++L+  L    R +E   +  +M 
Sbjct: 117 FNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMF 176

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           E  C+PN VT+  L++G C+E     A  +LD M + G +   I+Y  I+ G+CK G
Sbjct: 177 ETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG 233


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 158/310 (50%), Gaps = 14/310 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ +I     +  +   Q++L ++  + +I P  + +  +I  + +      A ++
Sbjct: 287 NIVTYNCMIGGFCISGRWSAAQRLLQEML-ERKISPNVVTYNALINAFVKEGKFFEAAEL 345

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           +DEM    +      +N++++      +LD  +++F +M  K  SPD  ++  LI G   
Sbjct: 346 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCG 405

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           ++R++D  ++  EM +R L    VT+ TLI+G CL   ++ AL L + ++    V PD  
Sbjct: 406 AKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMIS-SGVCPDIV 464

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG-----------IYSSLISALFKAGR 273
              +L+ GLC  G+L  AL + + M + K+++DA             Y+ LI  L   G+
Sbjct: 465 TCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGK 524

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   + +EM  RG  P+++TY+++I G CK+   + A  +   MG K    N +++N 
Sbjct: 525 FLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNT 584

Query: 334 ILGGLCKDGK 343
           ++ G CK G+
Sbjct: 585 LINGYCKAGR 594



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/247 (33%), Positives = 127/247 (51%), Gaps = 7/247 (2%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           LE A+ +F +M       +V  FN L+   +   + D +  L+Q ME K +  D  S+ I
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI       +L  A   F ++ K  L P +VTF TL++GLCL+ RV EAL L   I R  
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICR-- 179

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
              PD   F +L+ GLC  G +  A+ + + MV + ++ D   Y + +  + K G     
Sbjct: 180 ---PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSA 236

Query: 278 PAILKEMKE-RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
             +L++M+E    KPN V Y+A+I G CK+     +  +  EM DKG   N ++YN ++G
Sbjct: 237 LNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIG 296

Query: 337 GLCKDGK 343
           G C  G+
Sbjct: 297 GFCISGR 303



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 124/243 (51%), Gaps = 5/243 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIH 160
           AL  F +++   +   V  F TLL+    C  LD R+ E   +  +   PD  ++  L++
Sbjct: 135 ALSTFGKLTKLGLHPDVVTFTTLLHG--LC--LDHRVSEALDLFHQICRPDVLTFTTLMN 190

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     R+ +A  + D MV+  LQP  +T+GT + G+C       AL L   +  + ++K
Sbjct: 191 GLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIK 250

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+  +++++I GLC  G  S +  +  EM    I  +   Y+ +I     +GR +    +
Sbjct: 251 PNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRL 310

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L+EM ER   PN VTYNALI+ F KE  F  A  + DEM  +G   N I+YN ++ G CK
Sbjct: 311 LQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCK 370

Query: 341 DGK 343
             +
Sbjct: 371 QDR 373



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 139/286 (48%), Gaps = 14/286 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  +  +I     AK  D+  ++LH++     +V   + +  +I  +     L  AL +
Sbjct: 392 DVFTFTTLIDGYCGAKRIDDGMELLHEMPR-RGLVANTVTYNTLIHGFCLVGDLNAALDL 450

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY------------VSPDAC 153
             +M S  V   +   NTLL+     GKL    E+F+ M+K             V PD  
Sbjct: 451 SQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVL 510

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YNILI G +   +  +A ++++EM  R + P  +T+ ++I GLC + R+DEA ++    
Sbjct: 511 TYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVS- 569

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M   +  P+   F +LI G C  G +   L +  EM R  I  DA IY +LI    K G 
Sbjct: 570 MGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGN 629

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            N    I +EM   G  P+++T   +++GF  +E+ E A  +L+++
Sbjct: 630 INGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 675



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 142/302 (47%), Gaps = 4/302 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R ++L +  ++  L R     E   +L ++  +  + P +I +   +    +      AL
Sbjct: 179 RPDVLTFTTLMNGLCREGRVVEAVALLDRMVENG-LQPDQITYGTFVDGMCKMGDTVSAL 237

Query: 104 QMFDEMSSF-NVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
            +  +M    +++  V  ++ +++     G+      LF ++ +K + P+  +YN +I G
Sbjct: 238 NLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGG 297

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
             +S R   A ++  EM++R++ P +VT+  LI     E +  EA +L ++++    + P
Sbjct: 298 FCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLP-RGIIP 356

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   + S+I G C    L  A  +   M       D   +++LI     A R ++   +L
Sbjct: 357 NTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELL 416

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM  RG   N+VTYN LI GFC   D  AA  +  +M   G   + ++ N +L GLC +
Sbjct: 417 HEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDN 476

Query: 342 GK 343
           GK
Sbjct: 477 GK 478



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 134/305 (43%), Gaps = 14/305 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y+ +I    +    D  + + + L       P    F  +I  Y  A+ ++  +++
Sbjct: 357 NTITYNSMIDGFCKQDRLDAAEDMFY-LMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 415

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
             EM    +      +NTL++     G L+   +L Q M    V PD  + N L+ G   
Sbjct: 416 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCD 475

Query: 165 SRRLEDAWKVFDEMVKRRL-----------QPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           + +L+DA ++F  M K ++           +P ++T+  LI GL  E +  EA +L E+ 
Sbjct: 476 NGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEE- 534

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M    + PD   ++S+I GLC    L  A  +   M       +   +++LI+   KAGR
Sbjct: 535 MPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGR 594

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            ++   +  EM  RG   +++ Y  LI GF K  +   A  I  EM   G   + I+   
Sbjct: 595 VDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRN 654

Query: 334 ILGGL 338
           +L G 
Sbjct: 655 MLTGF 659


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 148/290 (51%), Gaps = 3/290 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ II    +  M  E  ++L         VP ++ +C++I        +ERAL++F+E 
Sbjct: 294 YNTIIDGYCKISMVQEATELLKDAVFKG-FVPDQVTYCSLINGLCAEGDVERALELFNEA 352

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGK-LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168
            +  ++  +  +N+L+      G  L  ++ + ++ E+   PD  +YNI+I+G      +
Sbjct: 353 QAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNI 412

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            DA  V ++ + +   P + TF TLI G C  L++D AL+L E  M  Y + PD   + S
Sbjct: 413 SDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVER-MWEYGIAPDTITYNS 471

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           ++ GLC  G+++      +EM+      +   Y+ LI    ++ +  E   ++ +M + G
Sbjct: 472 VLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEG 531

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             P++V++N LI GFC+  D E A+ +  ++ +KG  A   ++N ++G  
Sbjct: 532 LHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAF 581



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 146/299 (48%), Gaps = 5/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I  L +  M  E    L ++  +   +P +  +  +I  Y +  +++ A ++
Sbjct: 255 DVVTYNTLIRGLCKKSMPQEAMHYLRRMM-NQGCLPDDFTYNTIIDGYCKISMVQEATEL 313

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             +            + +L+N     G ++R  ELF +   K + PD   YN L+ G  +
Sbjct: 314 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 373

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED-IMRVYNVKPDG 223
              +  A +V +EM +    P + T+  +I GLC    + +A  +  D IM+ Y   PD 
Sbjct: 374 QGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGY--LPDV 431

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             F +LI G C   +L  AL + E M    I  D   Y+S+++ L KAG+ NE     +E
Sbjct: 432 FTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQE 491

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           M  +GC PN +TYN LI  FC+    E A  ++ +M  +G   + +S+N ++ G C++G
Sbjct: 492 MILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNG 550



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 133/251 (52%), Gaps = 7/251 (2%)

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK---LDRMKELFQIMEKYVSPDA 152
           A  L  A+++ D M ++ V   V + NTL+  +  C K    + M  L ++M +   PD 
Sbjct: 235 AGRLPEAVRLVDGMRAYAVPDVVTY-NTLI--RGLCKKSMPQEAMHYLRRMMNQGCLPDD 291

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN +I G      +++A ++  + V +   P  VT+ +LI GLC E  V+ AL+L  +
Sbjct: 292 FTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNE 351

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
             +   +KPD  V+ SL+KGLC  G +  AL V  EM  +    D   Y+ +I+ L K G
Sbjct: 352 -AQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMG 410

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
             ++   ++ +   +G  P+  T+N LI G+CK    ++A  +++ M + G   + I+YN
Sbjct: 411 NISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYN 470

Query: 333 VILGGLCKDGK 343
            +L GLCK GK
Sbjct: 471 SVLNGLCKAGK 481



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 142/300 (47%), Gaps = 6/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL  Y++ I  L  A    E  +++  ++     VP  + +  +I    +  + + A+  
Sbjct: 221 NLFTYNIWIRGLCEAGRLPEAVRLVDGMR--AYAVPDVVTYNTLIRGLCKKSMPQEAMHY 278

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDACSYNILIHGCV 163
              M +         +NT+++       +    EL +  + + +V PD  +Y  LI+G  
Sbjct: 279 LRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFV-PDQVTYCSLINGLC 337

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
               +E A ++F+E   + ++P +V + +L+ GLCL+  +  AL++  + M      PD 
Sbjct: 338 AEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNE-MAEEGCHPDI 396

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
           Q +  +I GLC +G +S A  V  + +      D   +++LI    K  + +    +++ 
Sbjct: 397 QTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVER 456

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M E G  P+++TYN++++G CK            EM  KGC  NPI+YN+++   C+  K
Sbjct: 457 MWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNK 516



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           FNTL++      KLD   +L + M +Y ++PD  +YN +++G   + ++ +  + F EM+
Sbjct: 434 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 493

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
            +   P  +T+  LI   C   +++EA K+    M    + PD   F +LI G C  G+L
Sbjct: 494 LKGCHPNPITYNILIENFCRSNKMEEASKVIVK-MSQEGLHPDAVSFNTLIYGFCRNGDL 552

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA--ILKEMKERGCKPNSVTYN 297
             A  + +++        A  +++LI A   +G+ N   A  I  EM  +G + +S TY 
Sbjct: 553 EGAYLLFQKLEEKGYSATADTFNTLIGAF--SGKLNMHMAEKIFDEMLSKGHRADSYTYR 610

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKG 323
            LI G CK  + + A+  L EM  KG
Sbjct: 611 VLIDGSCKTANVDRAYMHLVEMIKKG 636



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 7/210 (3%)

Query: 132 GKLDRMKELFQIMEKYVSPDAC-SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           G+L    + F+ M+ +  P A  +YN ++   V +   + A KV+  M+   + P L T 
Sbjct: 65  GRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTH 124

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
              +   CL  R   AL+L   +     V      + +++ GL A G    A  + ++M+
Sbjct: 125 TIRLRSFCLTARPHIALRLLRALPHRGAV-----AYCTVVCGLYAHGHTHDARQLFDQML 179

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
              +  +   ++ ++ AL K G   E   +L ++ +RG   N  TYN  I G C+     
Sbjct: 180 HTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLP 239

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCK 340
            A  ++D M       + ++YN ++ GLCK
Sbjct: 240 EAVRLVDGMRAYAVP-DVVTYNTLIRGLCK 268



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 7/229 (3%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACS--YNILIHGCVVSRRLEDAWKV 174
           TV  +  L+ P  + G++D +          +SP      Y   I     + RL DA   
Sbjct: 14  TVPAYCALIRPLASAGRVDAVDAAVASARSRLSPATIHPLYVASIRAYARAGRLRDAVDA 73

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
           F+ M      P    +  ++  L      D+A K+   ++    V PD       ++  C
Sbjct: 74  FERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAA-GVSPDLHTHTIRLRSFC 132

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
                 +AL     ++R      A  Y +++  L+  G  ++   +  +M      PN  
Sbjct: 133 LTARPHIAL----RLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLA 188

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +N ++   CK  D   A  +L ++  +G   N  +YN+ + GLC+ G+
Sbjct: 189 AFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGR 237



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 90/180 (50%), Gaps = 6/180 (3%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LK    N + Y+++I    R+   +E  +++ ++  +  + P  + F  +I  + R   L
Sbjct: 494 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEG-LHPDAVSFNTLIYGFCRNGDL 552

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMKE-LF-QIMEKYVSPDACSYN 156
           E A  +F ++       T   FNTL+      GKL+  M E +F +++ K    D+ +Y 
Sbjct: 553 EGAYLLFQKLEEKGYSATADTFNTLIGA--FSGKLNMHMAEKIFDEMLSKGHRADSYTYR 610

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           +LI G   +  ++ A+    EM+K+   P++ TFG +I  L +  RV +A+ +   ++++
Sbjct: 611 VLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKI 670


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 153/306 (50%), Gaps = 11/306 (3%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI---IFCNVIGFYGRAR 97
           KP  Y    Y+++I+   +A   D      H L  +T I    I    +  ++ +  + +
Sbjct: 228 KPDVYT---YNILISGFCKAGNTDAAS---HSLAQETTINGCTIDIHTYTAIVDWLAKNK 281

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYN 156
            +E A+ + +++++     T+  +N LLN     G+L+   +L  +I++   +PD  +Y 
Sbjct: 282 KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 341

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            LI G    +R  +A+K+F EM  R L    V +  LI  L    ++ +A  + +  M  
Sbjct: 342 SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYK-TMTS 400

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           +   PD    +++I GL   G +  A+ + + M    +  +  +YS+LI  L KA + + 
Sbjct: 401 HGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDC 460

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +L +MK+  C P+++TYN LI G CK  D EAA    DEM + GCK +  +YN+++ 
Sbjct: 461 ALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILIS 520

Query: 337 GLCKDG 342
           G CK G
Sbjct: 521 GFCKAG 526



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 129/245 (52%), Gaps = 2/245 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           +E A+ + +++++     T+  +N LLN     G+L+   +L  +I++   +PD  +Y  
Sbjct: 2   IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTS 61

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G    +R  +A+K+F EM  R L    V +  LI  L    ++ +A  + +  M  +
Sbjct: 62  LIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYK-TMTSH 120

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
              PD    +++I GL   G +  A+ + + M    +  +  +YS+LI  L KA + +  
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 180

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +L +MK+  C P+++TYN LI G CK  D EAA    DEM + GCK +  +YN+++ G
Sbjct: 181 LEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISG 240

Query: 338 LCKDG 342
            CK G
Sbjct: 241 FCKAG 245



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 142/300 (47%), Gaps = 4/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            +  Y+ ++  L +    +E   +L ++  D    P  + + ++I   G+ +    A ++
Sbjct: 20  TIATYNALLNGLCKMGRLEEAIDLLRKIV-DNGCTPDVVTYTSLIDGLGKEKRSFEAYKL 78

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           F EM+   + +    +  L+   L  GK+ +   +++ M  +   PD  + + +I G   
Sbjct: 79  FKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSK 138

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R+  A ++F  M  R L P  V +  LI+GLC   ++D AL++   + + +   PD  
Sbjct: 139 AGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF-CTPDTI 197

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP-AILKE 283
            +  LI GLC  G++  A    +EM+    + D   Y+ LIS   KAG  +    ++ +E
Sbjct: 198 TYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQE 257

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               GC  +  TY A++    K +  E A  +++++   GC     +YN +L GLCK G+
Sbjct: 258 TTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGR 317



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 128/279 (45%), Gaps = 3/279 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            +  Y+ ++  L +    +E   +L ++  D    P  + + ++I   G+ +    A ++
Sbjct: 301 TIATYNALLNGLCKMGRLEEAIDLLRKIV-DNGCTPDVVTYTSLIDGLGKEKRSFEAYKL 359

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           F EM+   + +    +  L+   L  GK+ +   +++ M  +   PD  + + +I G   
Sbjct: 360 FKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSK 419

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R+  A ++F  M  R L P  V +  LI+GLC   ++D AL++   + + +   PD  
Sbjct: 420 AGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF-CTPDTI 478

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LI GLC  G++  A    +EM+    + D   Y+ LIS   KAG  +    +  +M
Sbjct: 479 TYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDM 538

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
               C  N VTY ALISG CK      A      M ++G
Sbjct: 539 SSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMKERG 577



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 124/265 (46%), Gaps = 1/265 (0%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           VP  +    +I    +A  +  A+++F  M +  +      ++ L++      K+D   E
Sbjct: 123 VPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALE 182

Query: 140 LFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           +   M+K + +PD  +YN+LI G   S  +E A   FDEM++   +P + T+  LI G C
Sbjct: 183 MLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFC 242

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
                D A         +     D   + +++  L    ++  A+ + E++  +      
Sbjct: 243 KAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTI 302

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y++L++ L K GR  E   +L+++ + GC P+ VTY +LI G  KE+    A+ +  E
Sbjct: 303 ATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKE 362

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M  +G   + + Y  ++  L + GK
Sbjct: 363 MALRGLALDTVCYTALIRELLQTGK 387



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 91/210 (43%), Gaps = 34/210 (16%)

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI------------- 213
           ++E+A  + +++      PT+ T+  L+ GLC   R++EA+ L   I             
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 214 ---------------------MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
                                M +  +  D   + +LI+ L   G++  A  V + M   
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
               D    S++I  L KAGR      I K M+ RG  PN V Y+ALI G CK    + A
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 180

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDG 342
             +L +M    C  + I+YNV++ GLCK G
Sbjct: 181 LEMLAQMKKAFCTPDTITYNVLIDGLCKSG 210



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 1/142 (0%)

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
           +++EA+ L E I       P    + +L+ GLC +G L  A+ +  ++V +    D   Y
Sbjct: 1   KIEEAVALMEKIT-ANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTY 59

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           +SLI  L K  R  E   + KEM  RG   ++V Y ALI    +      A ++   M  
Sbjct: 60  TSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTS 119

Query: 322 KGCKANPISYNVILGGLCKDGK 343
            GC  + ++ + ++ GL K G+
Sbjct: 120 HGCVPDVVTLSTMIDGLSKAGR 141


>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g15630, mitochondrial; Flags: Precursor
 gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 146/295 (49%), Gaps = 6/295 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           +DL++    + +M DE  +  + +K +    PK     +++    R   +E A   + +M
Sbjct: 158 FDLLVRCCCQLRMVDEAIECFYLMK-EKGFYPKTETCNHILTLLSRLNRIENAWVFYADM 216

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
               ++  V  FN ++N     GKL + K    IME + + P   +YN L+ G  +  R+
Sbjct: 217 YRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRI 276

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E A  +  EM  +  QP + T+  ++  +C E R  E L+  ++I  V    PD   +  
Sbjct: 277 EGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEVLREMKEIGLV----PDSVSYNI 332

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI+G    G+L +A   ++EMV+  +      Y++LI  LF   +      +++E++E+G
Sbjct: 333 LIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKG 392

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              +SVTYN LI+G+C+  D + AF + DEM   G +    +Y  ++  LC+  K
Sbjct: 393 IVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNK 447



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 160/305 (52%), Gaps = 12/305 (3%)

Query: 41  KPFRYNLLHYDLIITKL---GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           K F+ ++  Y+ I++ +   GRA       ++L ++K +  +VP  + +  +I       
Sbjct: 289 KGFQPDMQTYNPILSWMCNEGRA------SEVLREMK-EIGLVPDSVSYNILIRGCSNNG 341

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYN 156
            LE A    DEM    +  T   +NTL++      K++  + L  +I EK +  D+ +YN
Sbjct: 342 DLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYN 401

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           ILI+G       + A+ + DEM+   +QPT  T+ +LIY LC + +  EA +L E ++  
Sbjct: 402 ILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVG- 460

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             +KPD  +  +L+ G CA+G +  A  + +EM    I  D   Y+ L+  L   G+  E
Sbjct: 461 KGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEE 520

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              ++ EMK RG KP+ ++YN LISG+ K+ D + AF + DEM   G     ++YN +L 
Sbjct: 521 ARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLK 580

Query: 337 GLCKD 341
           GL K+
Sbjct: 581 GLSKN 585



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/255 (32%), Positives = 135/255 (52%), Gaps = 4/255 (1%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV 148
           V GF  R R+ E A  +  EM S   Q  ++ +N +L+     G+   +  L ++ E  +
Sbjct: 267 VQGFSLRGRI-EGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEV--LREMKEIGL 323

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
            PD+ SYNILI GC  +  LE A+   DEMVK+ + PT  T+ TLI+GL +E +++ A  
Sbjct: 324 VPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEI 383

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           L  +I R   +  D   +  LI G C  G+   A  + +EM+ D I+     Y+SLI  L
Sbjct: 384 LIREI-REKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVL 442

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            +  +  E   + +++  +G KP+ V  N L+ G C   + + AF++L EM       + 
Sbjct: 443 CRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDD 502

Query: 329 ISYNVILGGLCKDGK 343
           ++YN ++ GLC +GK
Sbjct: 503 VTYNCLMRGLCGEGK 517



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 110/240 (45%), Gaps = 2/240 (0%)

Query: 65  EMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124
           E  +IL +   +  IV   + +  +I  Y +    ++A  + DEM +  +Q T   + +L
Sbjct: 379 EAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSL 438

Query: 125 LNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
           +       K     ELF+ ++ K + PD    N L+ G      ++ A+ +  EM    +
Sbjct: 439 IYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSI 498

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P  VT+  L+ GLC E + +EA +L  ++ R   +KPD   + +LI G    G+   A 
Sbjct: 499 NPDDVTYNCLMRGLCGEGKFEEARELMGEMKR-RGIKPDHISYNTLISGYSKKGDTKHAF 557

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            V++EM+          Y++L+  L K         +L+EMK  G  PN  ++ ++I   
Sbjct: 558 MVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAM 617


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/215 (37%), Positives = 119/215 (55%), Gaps = 4/215 (1%)

Query: 132 GKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           G++    E+F+ ME K  +PD+ +YNILI+G     +LE    + DEM  R   PT+VT+
Sbjct: 105 GQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTY 164

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
            TLI+G C   RVD A+ + ++ M    + P+   + +LI+GLC  GE+  A+ V +EM 
Sbjct: 165 TTLIHGFCTAGRVDAAMDILDE-MEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMK 223

Query: 251 RDKIEM--DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
               E   +   Y+ LI  L + G        L EM   GC PN+ TY ALI G C++  
Sbjct: 224 LRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGS 283

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           F  A  +L+EM   GC+ + + YN ++ GLCK G+
Sbjct: 284 FLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGE 318



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 122/247 (49%), Gaps = 6/247 (2%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR---- 136
           P  + +  +I  +  A  ++ A+ + DEM    +      +  L+     CG+++R    
Sbjct: 159 PTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILV 218

Query: 137 MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           +KE+ ++      P+  +Y  LIHG       E   +  DEM+     P   T+  LI+G
Sbjct: 219 LKEM-KLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHG 277

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC +    EA  L  +++ +   + D  ++ SLI GLC +GEL  A  ++  MV   +  
Sbjct: 278 LCQKGSFLEAAVLLNEMVAI-GCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAP 336

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           D   Y+SLI  L  AG  +E   +++EM+ +G  PNSVTY  LI+GF + +  + A  ++
Sbjct: 337 DVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLV 396

Query: 317 DEMGDKG 323
           +EM   G
Sbjct: 397 NEMKSNG 403



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 3/195 (1%)

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           D  SY+  I+G     ++ +A ++F EM ++   P   T+  LI GLC + +++  + L 
Sbjct: 90  DVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLM 149

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
           ++ M+     P    + +LI G C  G +  A+ + +EM    I  +   Y++LI  L  
Sbjct: 150 DE-MQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCD 208

Query: 271 AGRKNEFPAILKEMKERG--CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            G       +LKEMK RG  C PN VTY  LI G C++  FE     LDEM   GC  N 
Sbjct: 209 CGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNN 268

Query: 329 ISYNVILGGLCKDGK 343
            +Y  ++ GLC+ G 
Sbjct: 269 ATYTALIHGLCQKGS 283



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 3/179 (1%)

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
           R +  + +++   +       ++++   I GLC + ++ EA+++  + M      PD   
Sbjct: 70  RGIPSSLRIYRPKLLNSQDTDVISYSRKINGLCKKGQIAEAMEIFRE-MEEKGSAPDSFT 128

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           +  LI GLC   +L + + + +EM           Y++LI     AGR +    IL EM+
Sbjct: 129 YNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEME 188

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG--CKANPISYNVILGGLCKDG 342
            RG  PN+VTY ALI G C   + E A  +L EM  +G  C  N ++Y  ++ GLC+ G
Sbjct: 189 HRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKG 247



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 50/89 (56%)

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           + D   YS  I+ L K G+  E   I +EM+E+G  P+S TYN LI+G CK+   E   +
Sbjct: 88  DTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVS 147

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           ++DEM  +G     ++Y  ++ G C  G+
Sbjct: 148 LMDEMQARGFSPTVVTYTTLIHGFCTAGR 176


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 148/289 (51%), Gaps = 3/289 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ II    ++ M  E  ++L         VP  + +C++I        +ERAL++F+E 
Sbjct: 318 YNTIIDGYCKSGMLQEATELLKDAVFKG-FVPDRVTYCSLINGLCAEGDIERALELFNEA 376

Query: 110 SSFNVQMTVKFFNTLLNPKLTCG-KLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168
            + +++  +  +N+L+      G  L  ++ + +++E+   PD  +YNI+I+G      +
Sbjct: 377 QAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNI 436

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            DA  V ++ + +   P + TF TLI G C  L++D AL+L E  M  Y + PD   + S
Sbjct: 437 SDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVER-MWTYGIAPDVITYNS 495

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           ++ GLC  G+        EEM+      +A  Y+ LI    K  +  E   ++  M + G
Sbjct: 496 VLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDG 555

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             P++V++N LI GFC+  D + A+ +  ++ +KG  A   ++N+++G 
Sbjct: 556 LVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGA 604



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 132/246 (53%), Gaps = 3/246 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNI 157
           LE A+ + + M ++ V   V  +NTL+       K+    + L ++M +   PD  +YN 
Sbjct: 262 LEEAVALVERMGAY-VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNT 320

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I G   S  L++A ++  + V +   P  VT+ +LI GLC E  ++ AL+L  +  +  
Sbjct: 321 IIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNE-AQAK 379

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           ++KPD  V+ SL+KGLC  G +  AL V  EMV +    D   Y+ +I+ L K G  ++ 
Sbjct: 380 DLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDA 439

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++ +   +G  P+  T+N LI G+CK    ++A  +++ M   G   + I+YN +L G
Sbjct: 440 AVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNG 499

Query: 338 LCKDGK 343
           LCK GK
Sbjct: 500 LCKAGK 505



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 147/299 (49%), Gaps = 5/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ ++  L +     E  Q L ++ +    +P +  +  +I  Y ++ +L+ A ++
Sbjct: 279 DVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQG-CIPDDFTYNTIIDGYCKSGMLQEATEL 337

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             +            + +L+N     G ++R  ELF +   K + PD   YN L+ G   
Sbjct: 338 LKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCR 397

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV-DEALKLKEDIMRVYNVKPDG 223
              +  A +V +EMV+    P + T+  +I GLC    + D A+ + + I++ Y   PD 
Sbjct: 398 QGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGY--LPDV 455

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             F +LI G C   +L  AL + E M    I  D   Y+S+++ L KAG+  E     +E
Sbjct: 456 FTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEE 515

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           M  +GC+PN++TYN LI  FCK    E A  ++  M   G   + +S+N ++ G C++G
Sbjct: 516 MILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNG 574



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 5/214 (2%)

Query: 132 GKLDRMKELFQIMEKYVSPDAC-SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           G+L    + F+ M+ +  P A  +YN ++   V +   + A KV+  M+   + P   T 
Sbjct: 85  GRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTH 144

Query: 191 GTLIYGLCLELRVDEALKLKEDIM-RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
              +   CL  R   AL+L   +  R  + KP    + ++++GL A G    A  + +EM
Sbjct: 145 TVRLKSFCLTGRPHVALRLLRSLSERGCDAKP--AAYCTVVRGLYAHGHGYNARHLFDEM 202

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           +   +  D   +++++ AL + G   E  A+L ++ +RG   N  T N  I G C++   
Sbjct: 203 LGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRL 262

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           E A  +++ MG      + ++YN ++ GLCKD K
Sbjct: 263 EEAVALVERMGAY-VAPDVVTYNTLMRGLCKDSK 295



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 98/238 (41%), Gaps = 3/238 (1%)

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACS--YNILIHGCVVS 165
           E SS     T+  +  L+   ++ G+LD +         +++PD+    Y   I     +
Sbjct: 25  EPSSELTASTIPAYRALIRELVSAGRLDDVDAALASARSHLAPDSLQPLYVASIQAYARA 84

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            RL  A   F+ M      P    +  ++  L      D+A K+   ++    V PD + 
Sbjct: 85  GRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAA-GVAPDART 143

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
               +K  C  G   +AL +   +     +     Y +++  L+  G       +  EM 
Sbjct: 144 HTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEML 203

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            R   P+  T+N ++   C++ D   +  +L ++  +G  AN  + N+ + GLC+DG+
Sbjct: 204 GRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGR 261



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 100/235 (42%), Gaps = 19/235 (8%)

Query: 54  ITKLGRAKMFDEM--QQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111
           + K G+AK  +E   + IL   +      P  I +  +I  + +   LE A  +   M  
Sbjct: 500 LCKAGKAKEVNETFEEMILKGCR------PNAITYNILIENFCKINQLEEASGVIVRMCQ 553

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLED 170
             +      FNTL++     G LD    LFQ + EK  S  A ++NILI        ++ 
Sbjct: 554 DGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQM 613

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL-KLKEDIMRVYNVKPDGQVFASL 229
           A K+F EM+ +  +P L T+  L+ GLC    VD A   L E I + +   P    F  +
Sbjct: 614 AEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGF--VPSMATFGRM 671

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN-EFPAILKE 283
           +  L     +S A+ +   MVR       G+   ++  +    +K    P IL E
Sbjct: 672 LNLLAMNHRVSEAVAIIHIMVR------MGVVPEVVDTILSTDKKEIAAPKILVE 720


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 142/267 (53%), Gaps = 4/267 (1%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           + P  +++  +I    + + +  A  ++ EM S  +   V  ++ L++   T G+L    
Sbjct: 193 VQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAI 252

Query: 139 ELFQ--IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           +LF   I+E  + PD  ++NIL+ G     ++++   VF  M+K+ ++P +VT+ +L+ G
Sbjct: 253 DLFNKMILEN-IKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDG 311

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
            CL   V++A  +    M    V PD Q +  LI G C + ++  A+ + +EM    I  
Sbjct: 312 YCLVKEVNKAKSILY-TMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIP 370

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           D   Y+SLI  L K G+ +    ++ EM +RG  P+ +TY++++   CK    + A  +L
Sbjct: 371 DVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALL 430

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
            ++ D+G + N  +Y +++ GLCK G+
Sbjct: 431 TKLKDQGIRPNMYTYTILIDGLCKGGR 457



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 153/298 (51%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  II  + + K  ++   +  ++     I P  + +  +I  +     L+ A+ +
Sbjct: 196 NVVMYSTIIDGMCKDKHVNDAFDLYSEMV-SKGISPNVVTYSALISGFFTVGQLKDAIDL 254

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           F++M   N++  V  FN L++     GK+   K +F +M K  + P+  +Y  L+ G  +
Sbjct: 255 FNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCL 314

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            + +  A  +   M +R + P + ++  LI G C   +VDEA+ L ++ M   ++ PD  
Sbjct: 315 VKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKE-MHHKHIIPDVV 373

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SLI GLC +G++S AL + +EM    +  D   YSS++ AL K  + ++  A+L ++
Sbjct: 374 TYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKL 433

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           K++G +PN  TY  LI G CK    E A  I +++  KG      +Y V++ G C  G
Sbjct: 434 KDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKG 491



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 121/235 (51%), Gaps = 3/235 (1%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + +C+++  Y   + + +A  +   MS   V   ++ +N L++      K+D   
Sbjct: 298 IKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAM 357

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            LF+ M  K++ PD  +YN LI G     ++  A K+ DEM  R + P ++T+ +++  L
Sbjct: 358 NLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDAL 417

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C   +VD+A+ L    ++   ++P+   +  LI GLC  G L  A  + E+++     + 
Sbjct: 418 CKNHQVDKAIALLTK-LKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNIT 476

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI-SGFCKEEDFEA 311
              Y+ +I      G  +E  A+L +MK+  C P++VTY  +I S F K+E+ +A
Sbjct: 477 VNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKA 531



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 90/160 (56%), Gaps = 1/160 (0%)

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P  +TF TLI GLCL+ ++ +AL   ++++ +   + D   + +LI GLC VGE   AL
Sbjct: 124 HPNTITFTTLIKGLCLKGQIHQALLFHDNVVAM-GFQLDQVGYGTLIHGLCKVGETRAAL 182

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            +   +  + ++ +  +YS++I  + K    N+   +  EM  +G  PN VTY+ALISGF
Sbjct: 183 DLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGF 242

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
                 + A  + ++M  +  K +  ++N+++ G CKDGK
Sbjct: 243 FTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGK 282



 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 75/165 (45%), Gaps = 13/165 (7%)

Query: 56  KLGRA----KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111
           KLG+     K+ DEM        HD  + P  I + +++    +   +++A+ +  ++  
Sbjct: 384 KLGKISYALKLVDEM--------HDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKD 435

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLED 170
             ++  +  +  L++     G+L+    +F+ ++ K  +    +Y ++IHG       ++
Sbjct: 436 QGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDE 495

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           A  +  +M      P  VT+  +I  L  +   D+A KL+E I R
Sbjct: 496 ALALLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKAEKLREMITR 540


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 168/329 (51%), Gaps = 17/329 (5%)

Query: 17  DPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD 76
           + K A+QL +N        E   +KP   +++ Y++II  L + K+  E   +  ++ + 
Sbjct: 189 ETKAAIQLMRN-------LEERSIKP---DVVMYNIIIDSLCKNKLVGEACNLYSEM-NA 237

Query: 77  TRIVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
            +I P  + +  +I GF     L+E A+ + +EM   N+   V  F+ L++     GK+ 
Sbjct: 238 KQIYPNVVTYTTLIYGFCIMGCLIE-AVALLNEMKLKNINPDVYTFSILIDALGKEGKMK 296

Query: 136 RMKELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
             K +  +M K YV PD  +YN L+ G  +   ++ A  VF+ M +  + P + ++  +I
Sbjct: 297 AAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMI 356

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
            GLC    VDEA+ L E+ M+  NV P+   F SLI GLC  G ++    + ++M RD+ 
Sbjct: 357 DGLCKTKMVDEAISLFEE-MKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKM-RDRS 414

Query: 255 EM-DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           ++ D   YSSLI AL K    ++  A+ K+M  +  +P+  TY  LI G CK    + A 
Sbjct: 415 QLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQ 474

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDG 342
            +   +  KG   +  +Y V++ G CK G
Sbjct: 475 EVFQHLLIKGYHLDIRTYTVMISGFCKAG 503



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 126/246 (51%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNI 157
           +++AL+  D++ +   Q+    + TL+N     G+     +L + + E+ + PD   YNI
Sbjct: 155 VKKALKFHDDVVALEFQLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNI 214

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I     ++ + +A  ++ EM  +++ P +VT+ TLIYG C+   + EA+ L  + M++ 
Sbjct: 215 IIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNE-MKLK 273

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N+ PD   F+ LI  L   G++  A  V   M++  ++ D   Y+SL+   F        
Sbjct: 274 NINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHA 333

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +   M + G  P   +Y  +I G CK +  + A ++ +EM  K    N I++N ++ G
Sbjct: 334 KYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDG 393

Query: 338 LCKDGK 343
           LCK G+
Sbjct: 394 LCKSGR 399



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 144/286 (50%), Gaps = 5/286 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGR-AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           LK    ++  + ++I  LG+  KM  +  +I+  +     + P  + + +++  Y     
Sbjct: 272 LKNINPDVYTFSILIDALGKEGKM--KAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNE 329

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           ++ A  +F+ M+   V   V+ +  +++       +D    LF+ M+ K V P+  ++N 
Sbjct: 330 VKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNS 389

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G   S R+   W + D+M  R     ++T+ +LI  LC    +D+A+ L +  M   
Sbjct: 390 LIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKK-MITQ 448

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            ++PD   +  LI GLC  G L +A  V + ++     +D   Y+ +IS   KAG  +E 
Sbjct: 449 EIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEA 508

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
            A+L +M++ GC PN++T++ +I    ++++ + A  +L EM  +G
Sbjct: 509 LALLSKMEDNGCIPNAITFDIIICALFEKDENDKAEKLLREMIARG 554



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 144/364 (39%), Gaps = 45/364 (12%)

Query: 13  RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ 72
           RL+  P L++ LF++     + +         ++  HY+          +F+ M  +   
Sbjct: 7   RLRSAPSLSVSLFRHSLLCYSQSACTRASAMLHSQSHYNNHNDHNDAVALFNRMLLM--- 63

Query: 73  LKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132
                R  P    F N++    + +    A+ +   +    +   +   N L+N     G
Sbjct: 64  -----RPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHLG 118

Query: 133 KLD-RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           ++      L  I+++   PD  +   LI G  +   ++ A K  D++V    Q   +++G
Sbjct: 119 QITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYG 178

Query: 192 TLIYGLC--------------LELR---------------------VDEALKLKEDIMRV 216
           TLI GLC              LE R                     V EA  L  + M  
Sbjct: 179 TLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSE-MNA 237

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             + P+   + +LI G C +G L  A+ +  EM    I  D   +S LI AL K G+   
Sbjct: 238 KQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKA 297

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +L  M +   KP+ VTYN+L+ G+    + + A  + + M   G      SY +++ 
Sbjct: 298 AKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMID 357

Query: 337 GLCK 340
           GLCK
Sbjct: 358 GLCK 361



 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 53/118 (44%)

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F +++  L  +     A+ + + +    I  D    + LI+     G+     ++L  + 
Sbjct: 72  FNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHLGQITLSFSVLATIL 131

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +RG  P+ +T   LI G C   + + A    D++     + + ISY  ++ GLCK G+
Sbjct: 132 KRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCKIGE 189


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 157/314 (50%), Gaps = 9/314 (2%)

Query: 34  DTEAHPLKPFRYNLLHYDLIIT---KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI 90
           D +A  + P   N++ Y+ ++    K G A    + +  + ++  + +I P E+ F  +I
Sbjct: 225 DMKAWGISP---NVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLAN-KICPNEVTFNTLI 280

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VS 149
             + +   +  A + F+EM    ++  +  +N+L+N     GKL+   +L+  M    + 
Sbjct: 281 DGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLK 340

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P+  +YN LI+G    + +++A KVFD++ K+ L P ++TF T+I   C E  ++E   L
Sbjct: 341 PNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSL 400

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
              ++    + P+   +  LI GLC   +L  A  +  EM    ++ D   Y+ LI  L 
Sbjct: 401 CSSMLD-EGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLC 459

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           K  +      +L EM   G KPN VTYN L+ G+C E   +AA  +   M  +  + N +
Sbjct: 460 KNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVV 519

Query: 330 SYNVILGGLCKDGK 343
           +YNV++ G CK  K
Sbjct: 520 TYNVLIKGYCKINK 533



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 140/253 (55%), Gaps = 5/253 (1%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM--KELF--QIMEKYVSP 150
           RA  L +A    ++M ++ +   V  +NTL++     G   +M   E F  +++   + P
Sbjct: 212 RAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICP 271

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           +  ++N LI G      +  A K F+EM K+ L+P +VT+ +LI GLC   +++EA+ L 
Sbjct: 272 NEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDL- 330

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
            D M    +KP+   + +LI G C    +  A  V +++ + ++  +   ++++I A  K
Sbjct: 331 WDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCK 390

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            G   E  ++   M + G  PN  TYN LI+G C+++D +AA  +L+EM +KG K + ++
Sbjct: 391 EGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVT 450

Query: 331 YNVILGGLCKDGK 343
           YN+++ GLCK+ K
Sbjct: 451 YNILIDGLCKNDK 463



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 100/190 (52%), Gaps = 4/190 (2%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           S N L+   V   ++ D   V+ EM+KRR+   L TF   I GLC   ++++A    ED 
Sbjct: 167 SCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIED- 225

Query: 214 MRVYNVKPDGQVFASLIKGLC---AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
           M+ + + P+   + +L+ G C   + G++  A    +EM+ +KI  +   +++LI    K
Sbjct: 226 MKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCK 285

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
                      +EM+++G KPN VTYN+LI+G C     E A  + D+M   G K N ++
Sbjct: 286 DENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVT 345

Query: 331 YNVILGGLCK 340
           YN ++ G CK
Sbjct: 346 YNALINGFCK 355



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 125/246 (50%), Gaps = 7/246 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           A + F     +  ++++   N LL+  +   K+  ++ ++ +++++ +  +  ++NI I+
Sbjct: 149 AYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFIN 208

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK----LKEDIMRV 216
           G   + +L  A    ++M    + P +VT+ TL+ G C      +  K    +KE  M  
Sbjct: 209 GLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKE--MLA 266

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             + P+   F +LI G C    ++ A    EEM +  ++ +   Y+SLI+ L   G+  E
Sbjct: 267 NKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEE 326

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +  +M   G KPN VTYNALI+GFCK++  + A  + D++  +    N I++N ++ 
Sbjct: 327 AIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMID 386

Query: 337 GLCKDG 342
             CK+G
Sbjct: 387 AYCKEG 392



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 6/223 (2%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP   N++ Y+ +I    + KM  E  ++   +     +VP  I F  +I  Y +  ++
Sbjct: 339 LKP---NIVTYNALINGFCKKKMMKEATKVFDDVSKQ-ELVPNVITFNTMIDAYCKEGMM 394

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNIL 158
           E    +   M    +   V  +N L+        L   KEL   ME K +  D  +YNIL
Sbjct: 395 EEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNIL 454

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   + +  +A K+ +EM    L+P  VT+ TL+ G C+E ++  AL ++   M    
Sbjct: 455 IDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTR-MEKER 513

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
            +P+   +  LIKG C + +L  A G+  EM+   +  +   Y
Sbjct: 514 KQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTY 556


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 139/295 (47%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ ++  L +    +E   +L ++  D    P  + + ++I   G+ +    A ++F EM
Sbjct: 203 YNALLNGLCKMGRLEEAIDLLRKIV-DNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEM 261

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
           +   + +    +  L+   L  GK+ +   +++ M  +   PD  + + +I G   + R+
Sbjct: 262 ALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRI 321

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
             A ++F  M  R L P  V +  LI+GLC   ++D AL++   + + +   PD   +  
Sbjct: 322 GAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF-CTPDTITYNI 380

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI GLC  G++  A    +EM+    + D   Y+ L+S   KAG  +    +  +M    
Sbjct: 381 LIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSH 440

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C PN VTY  LISG CK      A      M ++GC  +   Y+ ++ GLCK GK
Sbjct: 441 CSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGK 495



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 136/258 (52%), Gaps = 2/258 (0%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIM 144
           +  ++ +  + + ++ A+ + +++++     T+  +N LLN     G+L+   +L  +I+
Sbjct: 168 YTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIV 227

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
           +   +PD  +Y  LI G    +R  +A+K+F EM  R L    V +  LI GL    ++ 
Sbjct: 228 DNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIP 287

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           +A  + +  M      PD    +++I GLC  G +  A+ + + M    +  +  +YS+L
Sbjct: 288 QASSVYK-TMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSAL 346

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           I  L KA + +    +L +MK+  C P+++TYN LI G CK  D EAA    DEM + GC
Sbjct: 347 IHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGC 406

Query: 325 KANPISYNVILGGLCKDG 342
           K +  +YN+++ G CK G
Sbjct: 407 KPDVYTYNILVSGFCKAG 424



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 140/296 (47%), Gaps = 4/296 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I  LG+ K   E  ++  ++     +V   + +  +I    +A  + +A  +
Sbjct: 234 DVVTYTSLIDGLGKEKRSFEAYKLFKEMALRG-LVLDTVCYTALIRGLLQAGKIPQASSV 292

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           +  M+S      V   +T+++     G++     +F+ ME + ++P+   Y+ LIHG   
Sbjct: 293 YKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCK 352

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +R+++ A ++  +M K    P  +T+  LI GLC    V+ A    ++++     KPD  
Sbjct: 353 ARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEA-GCKPDVY 411

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  L+ G C  G    A GV ++M       +   Y +LIS L K  +  +     + M
Sbjct: 412 TYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHM 471

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           KERGC P+S  Y++L+ G CK    E    + DEM   G  AN  +   ++  LCK
Sbjct: 472 KERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFHLCK 526



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 123/249 (49%), Gaps = 11/249 (4%)

Query: 102 ALQMFDEMSS--FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSY 155
           A ++F  +SS  F  Q +V   N LL+      +  R +E   +++  ++    PD  ++
Sbjct: 41  AWELFQCLSSPRFGFQHSVHTGNALLD---VFARTKRHREAGNLLKNELATTFLPDVETW 97

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           N+LI G  ++R  E+A+ V  EM +   + P+L T   +++GLC   +V  A+   E   
Sbjct: 98  NVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTT 157

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
                  D   + +++  L    ++  A+ + E++  +        Y++L++ L K GR 
Sbjct: 158 -TNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRL 216

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            E   +L+++ + GC P+ VTY +LI G  KE+    A+ +  EM  +G   + + Y  +
Sbjct: 217 EEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTAL 276

Query: 335 LGGLCKDGK 343
           + GL + GK
Sbjct: 277 IRGLLQAGK 285



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKY 147
           ++  + +A   + A  +FD+MSS +    V  + TL++      +L +    FQ M E+ 
Sbjct: 416 LVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERG 475

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
             PD+  Y+ L+ G   S +LE    +FDEM +R       T   LI+ LC   RVDEA+
Sbjct: 476 CPPDSFVYSSLVDGLCKSGKLEGGCMLFDEM-ERSGVANSQTRTRLIFHLCKANRVDEAV 534

Query: 208 KL 209
            L
Sbjct: 535 SL 536


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 160/302 (52%), Gaps = 5/302 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ N++ Y ++++ L +    DE  Q+L++++ +  + P  + +  +I    +   +++A
Sbjct: 322 FQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANN-LQPDLVTYSILIHGLCKQGKVQQA 380

Query: 103 LQMFDEMSSFNVQMTVKFFNT-LLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           +Q++ EM  FN      F ++ +L      G L   +  F  ++   + PD   YNI+I 
Sbjct: 381 IQLYKEMC-FNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMID 439

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G V    +E+A +++  +  + + P++VTF +LIYG C   +V EA +L E I +++ ++
Sbjct: 440 GYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESI-KLHGLE 498

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P    + +L+   C  G ++    +  EM    IE     Y+ +I  L K  +  E   +
Sbjct: 499 PSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQL 558

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L++M+ +G  P+ +TYN +I  FCK +D   AF +LD+M     +  P +YNV++ GLC+
Sbjct: 559 LEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCR 618

Query: 341 DG 342
            G
Sbjct: 619 YG 620



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 127/227 (55%), Gaps = 1/227 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           +V  FNT+++     G  D  K  F +M KY + PD  SYNILIHG +V+  +E+A ++ 
Sbjct: 184 SVVSFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEALELT 243

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           ++M K+ LQP +VT+  +  G  L   +  A ++ + ++    +KPD   +  LI G C 
Sbjct: 244 NDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQ 303

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
           +G +  AL ++ +++    +++  +YS L+S+L K G+ +E   +L EM+    +P+ VT
Sbjct: 304 MGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVT 363

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           Y+ LI G CK+   + A  +  EM       N  +++ IL GLC+ G
Sbjct: 364 YSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKG 410



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 156/313 (49%), Gaps = 5/313 (1%)

Query: 32  PNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIG 91
            ND E   L+P   +++ Y ++        +    ++I+ ++  D  + P  + +  +I 
Sbjct: 243 TNDMEKQGLQP---DMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLIC 299

Query: 92  FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSP 150
            + +   +E AL++  ++ S   Q+ V  ++ LL+     G++D   +L   ME   + P
Sbjct: 300 GHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQP 359

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           D  +Y+ILIHG     +++ A +++ EM   R+ P       ++ GLC +  + +A ++ 
Sbjct: 360 DLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDA-RMY 418

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
            D + + N++PD  ++  +I G   +G++  A+ + + +    I      ++SLI    K
Sbjct: 419 FDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCK 478

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
             +  E   +L+ +K  G +P++VTY  L++ +C+E +      +L EM  K  +   ++
Sbjct: 479 NRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVT 538

Query: 331 YNVILGGLCKDGK 343
           Y V++ GLCK  K
Sbjct: 539 YTVVIKGLCKQRK 551



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 150/310 (48%), Gaps = 6/310 (1%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           + EA+ L+P   +L+ Y ++I  L +     +  Q+  ++  + RI P       ++   
Sbjct: 351 EMEANNLQP---DLVTYSILIHGLCKQGKVQQAIQLYKEMCFN-RIFPNSFAHSGILKGL 406

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDA 152
               +L  A   FD +   N++  V  +N +++  +  G ++    L++ + +K ++P  
Sbjct: 407 CEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSI 466

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            ++N LI+G   +R++ +A ++ + +    L+P+ VT+ TL+   C E  +++  +L  +
Sbjct: 467 VTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLE 526

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M + +++P    +  +IKGLC   +L  ++ + E+M    +  D   Y+++I    KA 
Sbjct: 527 -MNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAK 585

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
              +   +L +M     +P   TYN LI G C+  D E A  +L  + D+      ++Y 
Sbjct: 586 DMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYT 645

Query: 333 VILGGLCKDG 342
            ++   C  G
Sbjct: 646 TMIKAHCVKG 655



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 132/306 (43%), Gaps = 38/306 (12%)

Query: 50  YDLIITKLGRAKMFDEMQQI-LHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDE 108
           Y+++I   G  K+ D  + + L++   D  I P  + F ++I  + + R +  A ++ + 
Sbjct: 434 YNIMID--GYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLES 491

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRR 167
           +    ++ +   + TL+N     G ++++ EL   M  K + P   +Y ++I G    R+
Sbjct: 492 IKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRK 551

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM--------RVYNV 219
           LE++ ++ ++M  + L P  +T+ T+I   C    + +A +L +D++          YNV
Sbjct: 552 LEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNV 611

Query: 220 KPDG--------------------------QVFASLIKGLCAVGELSLALGVKEEMVRDK 253
             DG                            + ++IK  C  G+   A+ V  +MV   
Sbjct: 612 LIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKG 671

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
            E+    YS++I+ L K    NE       M   G  P+   +  +++ F +     + F
Sbjct: 672 FEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNAFHRAGHVHSVF 731

Query: 314 TILDEM 319
            +L  M
Sbjct: 732 ELLAVM 737



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 36/214 (16%)

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY--------------------------- 195
           V SR + DA  V  +M ++ L+P++ T+ +L+Y                           
Sbjct: 94  VASRMVHDALFVLVKMKEQNLRPSIQTYNSLLYNLRHTDIMWDVYNDIKDSGTPQSARTS 153

Query: 196 -----GLCLELRV-DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
                GLC + R  D  L L+++  + +   P    F +++   C +G   +A      M
Sbjct: 154 SIIVDGLCGQSRFRDAVLFLRQNDGKEF--APSVVSFNTIMSRYCKLGLADVAKSFFCMM 211

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           ++  I  D   Y+ LI  L  AG   E   +  +M+++G +P+ VTY  +  GF      
Sbjct: 212 LKYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLM 271

Query: 310 EAAFTILDEM-GDKGCKANPISYNVILGGLCKDG 342
             A  I+ +M  D+G K + ++Y V++ G C+ G
Sbjct: 272 SGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMG 305


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 139/258 (53%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++  Y R   L+   ++   M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 171 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 230

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K + P+  ++  LI G   + R++ A +++  M+ + L P L+T+ TLIYGLC 
Sbjct: 231 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCK 290

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 291 KGDLKQAHHLIDE-MSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDV 349

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KPN  TY  +I+ FCK+ D      +L EM
Sbjct: 350 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLLKEM 409

Query: 320 GDKGCKANPISYNVILGG 337
              G   + ++YNV++ G
Sbjct: 410 QRDGHVPSVVTYNVLMNG 427



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 124/228 (54%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G +   + +F  + K+ + P   SYN L++G +    L++ +++ 
Sbjct: 137 SLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 196

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
             M+   +QP + T+  LI GLC E ++D+A +L ++ M V  + P+G  F +LI G C 
Sbjct: 197 SAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDE-MLVKGLVPNGVTFTTLIDGHCK 255

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + + M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 256 NGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKIT 315

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D + AF     M  +    + ++Y  ++ GLC++G+
Sbjct: 316 YTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGR 363



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 130/244 (53%), Gaps = 6/244 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 157 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS--AMLASGVQPDVYTYSVL 214

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G     +++DA ++FDEM+ + L P  VTF TLI G C   RVD A+++ + ++   +
Sbjct: 215 INGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLS-QS 273

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   + +LI GLC  G+L  A  + +EM    ++ D   Y++LI    K G  +   
Sbjct: 274 LLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAF 333

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
              K M +     + V Y ALISG C+E     A  +L EM   G K N  +Y +I+   
Sbjct: 334 EHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEF 393

Query: 339 CKDG 342
           CK G
Sbjct: 394 CKKG 397


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 140/258 (54%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++  Y R   L+   ++   M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 169 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 289 KGDLKQAHDLIDE-MSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP+  TY  +I+ FCK+ D      +L EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEM 407

Query: 320 GDKGCKANPISYNVILGG 337
              G   + ++YNV++ G
Sbjct: 408 QRNGHAPSVVTYNVLMNG 425



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 125/228 (54%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G +   + +F  + K+ + P   SYN L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
             M+   +QP + T+  LI GLC E ++D+A +L ++ M V  + P+G  F +LI G C 
Sbjct: 195 SAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDE-MLVKGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+  T
Sbjct: 254 NGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D + AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGR 361



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 131/244 (53%), Gaps = 6/244 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 155 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS--AMLASGVQPDVYTYSVL 212

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G     +++DA ++FDEM+ + L P  VTF TLI G C   RVD A+++ + ++   +
Sbjct: 213 INGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QS 271

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   + +LI GLC  G+L  A  + +EM    ++ D   Y++LI    K G  +   
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAF 331

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
              K M +   + + V Y ALISG C+E     A  +L EM   G K +  +Y +I+   
Sbjct: 332 EHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEF 391

Query: 339 CKDG 342
           CK G
Sbjct: 392 CKKG 395



 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  E+++          ++ L+    K G      ++   + + G +P+ V+YN L+
Sbjct: 119 LVWGFYEDILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 221


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 141/258 (54%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++  Y R   L+   ++   M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANEL 234

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 294

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 295 KGDLKQAHDLIDE-MSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDV 353

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP++ TY  +I+ FCK+ D      +L EM
Sbjct: 354 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEM 413

Query: 320 GDKGCKANPISYNVILGG 337
              G   + ++YNV++ G
Sbjct: 414 HRDGHAPSVVTYNVLMNG 431



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 128/239 (53%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   SYN L++G + 
Sbjct: 130 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++ +++   M+   +QP + T+  LI GLC E ++D A +L ++ M V  + P+G 
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDE-MLVKGLVPNGV 248

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 308

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G KP+  TY  LI G CKE D + AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 309 SMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGR 367



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 130/244 (53%), Gaps = 6/244 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS--AMLASGVQPDVYTYSVL 218

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G     +++ A ++FDEM+ + L P  VTF TLI G C   RVD A+++ + ++   +
Sbjct: 219 INGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QS 277

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   + +LI GLC  G+L  A  + +EM    ++ D   Y++LI    K G  +   
Sbjct: 278 LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAF 337

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
              K M +   + + V Y ALISG C+E     A  +L EM   G K +  +Y +I+   
Sbjct: 338 EHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEF 397

Query: 339 CKDG 342
           CK G
Sbjct: 398 CKKG 401



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G      ++   + + G +P+ V+YN L+
Sbjct: 125 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 185 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 227


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 173/352 (49%), Gaps = 18/352 (5%)

Query: 8   LACLPRLQKDPKLALQLFKNPNPNPN-DTEAHPLKPFRYNLLHYDLIIT----KLGRAKM 62
           +A +    KD K+A +L ++   NPN D      +     +L+Y L+I+     L  + +
Sbjct: 132 VAQIATASKDLKMARKLIQDFWVNPNLDVGVSFARKLFDKMLNYGLLISVDSCNLFISHL 191

Query: 63  FDEMQQILHQLKHD-----------TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111
            +++  I   LK +             + P    +  VI    +   +  A ++  EM S
Sbjct: 192 SEDLDGIKIALKGEWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMIS 251

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLED 170
             +      + TL++     G +     LF  M+K  +SPD  +Y  +I G   + R+ +
Sbjct: 252 EGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVME 311

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           A K+F EMV +RL+P  VT+  LI G C E ++ EA  L   ++++  + P+   + +L 
Sbjct: 312 ADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQM-GLTPNIVTYTALA 370

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
            GLC  GE+  A  +  EM R  +E++   Y+SL++ L KAG  ++   ++K+M+  G  
Sbjct: 371 DGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFH 430

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           P++VTY  L+  +CK  +   A  +L +M D+  +   +++NV++ G C  G
Sbjct: 431 PDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSG 482



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 144/289 (49%), Gaps = 14/289 (4%)

Query: 64  DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT 123
           D +  +L  +K+D R+V   + F           L  R +      +S +++M  K    
Sbjct: 95  DHLIWVLMNIKNDYRLV---LSFFEWACLRRDPSLEARCIVAQIATASKDLKMARKLIQD 151

Query: 124 L-LNPKLTCGKLDRMKELFQIMEKY---VSPDACSYNIL-----IHGCVVSRRLEDAWKV 174
             +NP L  G +   ++LF  M  Y   +S D+C+  I      + G  ++ + E   K+
Sbjct: 152 FWVNPNLDVG-VSFARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKGEWVLKL 210

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
            +EM  + L+P   T+  +I  LC   +V EA ++  +++    + PDG ++ +LI G C
Sbjct: 211 IEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMIS-EGIAPDGVIYTTLIDGFC 269

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
            +G +S A  + +EM + KI  D   Y+++I  L + GR  E   +  EM  +  +P+ V
Sbjct: 270 KLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEV 329

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           TY ALI G+CKE   + AF++ ++M   G   N ++Y  +  GLCK G+
Sbjct: 330 TYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGE 378



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 140/285 (49%), Gaps = 18/285 (6%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVK 119
           ++FDEMQ+         +I P  I +  VI G     R++E A ++F EM    ++    
Sbjct: 279 RLFDEMQK--------RKISPDFITYTAVICGLCQTGRVME-ADKLFHEMVCKRLEPDEV 329

Query: 120 FFNTLLNPKLTCGKLDRMKELF----QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVF 175
            +  L++     GK   MKE F    Q+++  ++P+  +Y  L  G      ++ A ++ 
Sbjct: 330 TYTALIDGYCKEGK---MKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELL 386

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
            EM ++ L+  + T+ +L+ GLC    +D+A+KL +D M V    PD   + +L+   C 
Sbjct: 387 HEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKD-MEVAGFHPDAVTYTTLMDAYCK 445

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
             E+  A  +  +M+  +++     ++ L++    +G   +   +LK M E+G  PN+ T
Sbjct: 446 SREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATT 505

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           YN+LI  +C   +  A   I   M  KG   +  +YN+++ G CK
Sbjct: 506 YNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCK 550



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 114/236 (48%), Gaps = 2/236 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           ++ A ++  EM    +++ +  +N+L+N     G +D+  +L + ME     PDA +Y  
Sbjct: 379 VDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTT 438

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L+     SR +  A ++  +M+ R LQPT+VTF  L+ G C+   +++  KL + ++   
Sbjct: 439 LMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLE-K 497

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + P+   + SLIK  C    +     +   M    +  D   Y+ LI    KA    E 
Sbjct: 498 GIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEA 557

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             + ++M  +G      +YNALI GF K + F  A  + ++M  +G  A+   YN+
Sbjct: 558 WFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNI 613


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 136/264 (51%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P ++    +I  Y +   +E AL    +  +   +     +NT +N     G +    ++
Sbjct: 253 PTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKV 312

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
             +M ++   PD  +YNI+++    + +LE+A  + ++MV+R   P + TF TLI  LC 
Sbjct: 313 MDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCS 372

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R++EAL L   +  +  + PD   F  LI  LC VG+  LAL + EEM       D  
Sbjct: 373 GNRLEEALDLARQVT-LKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEV 431

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI  L   G+  +   +LKEM+  GC  ++VTYN +I G CK+   E A  + D+M
Sbjct: 432 TYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQM 491

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             +G   N I++N ++ GLCKD +
Sbjct: 492 DLQGISRNAITFNTLIDGLCKDKR 515



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 124/242 (51%), Gaps = 2/242 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILIH 160
           AL++F+EM S         +NTL++   + GKL +  +L + ME    P    +YN +I 
Sbjct: 414 ALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIID 473

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     R+E+A +VFD+M  + +    +TF TLI GLC + R+D+A +L   ++    ++
Sbjct: 474 GLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMIS-EGLQ 532

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   + S++   C  G++  A  + + M  +  E+D   Y +LI+ L KAGR      +
Sbjct: 533 PNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKL 592

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L+ M+ +G +     YN +I    +  +   A  +  EM + G   +  +Y ++  GLC+
Sbjct: 593 LRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCR 652

Query: 341 DG 342
            G
Sbjct: 653 GG 654



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 127/266 (47%), Gaps = 2/266 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-M 137
           I P  + F  ++    RA  +  A+ M +EMSS  V      F TL+   +  G +   +
Sbjct: 181 IKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAAL 240

Query: 138 KELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           +   +++E   SP   + N+LI+G     R+EDA     + +    +P  +T+ T + GL
Sbjct: 241 RVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGL 300

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C    V  ALK+  D+M      PD   +  ++  LC  G+L  A G+  +MV      D
Sbjct: 301 CQNGHVGHALKVM-DVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPD 359

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              +++LI AL    R  E   + +++  +G  P+  T+N LI+  CK  D + A  + +
Sbjct: 360 ITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFE 419

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
           EM   GC  + ++YN ++  LC  GK
Sbjct: 420 EMKSSGCTPDEVTYNTLIDNLCSLGK 445



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 139/288 (48%), Gaps = 6/288 (2%)

Query: 56  KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ 115
           KLGR +  D +  I  ++ +     P +I +   +    +   +  AL++ D M      
Sbjct: 267 KLGRVE--DALGYIQQEIANGFE--PDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHD 322

Query: 116 MTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKV 174
             V  +N ++N     G+L+  K +  Q++E+   PD  ++N LI       RLE+A  +
Sbjct: 323 PDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDL 382

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
             ++  + L P + TF  LI  LC       AL+L E+ M+     PD   + +LI  LC
Sbjct: 383 ARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEE-MKSSGCTPDEVTYNTLIDNLC 441

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
           ++G+L  AL + +EM           Y+++I  L K  R  E   +  +M  +G   N++
Sbjct: 442 SLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAI 501

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           T+N LI G CK++  + A  ++ +M  +G + N I+YN IL   CK G
Sbjct: 502 TFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQG 549



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 151/313 (48%), Gaps = 16/313 (5%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMF-DEMQQILHQLKHDTRIVPKEIIF---CNVIG 91
           E H +   R  ++H    +    R ++F D +  +L+QL     I    +++    NV+ 
Sbjct: 107 EGHQV---RVGVVHS--FLESYARQQLFVDAVDLVLNQLDPLFGIQADTVVYNHLLNVLV 161

Query: 92  FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSP 150
              + +LLE    ++ EM    ++  V  FNTL+       ++     + + M    V+P
Sbjct: 162 EGSKMKLLE---TVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAP 218

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK-L 209
           D  ++  L+ G V    ++ A +V   M++    PT VT   LI G C   RV++AL  +
Sbjct: 219 DETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYI 278

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
           +++I   +  +PD   + + + GLC  G +  AL V + MV++  + D   Y+ +++ L 
Sbjct: 279 QQEIANGF--EPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLC 336

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           K G+  E   IL +M ERGC P+  T+N LI   C     E A  +  ++  KG   +  
Sbjct: 337 KNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVY 396

Query: 330 SYNVILGGLCKDG 342
           ++N+++  LCK G
Sbjct: 397 TFNILINALCKVG 409



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 64/128 (50%)

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
           ++ ++ D  V+  L+  L    ++ L   V  EM    I+ D   +++L+ AL +A +  
Sbjct: 143 LFGIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVR 202

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
               +L+EM   G  P+  T+  L+ GF +E   +AA  +   M + GC    ++ NV++
Sbjct: 203 TAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLI 262

Query: 336 GGLCKDGK 343
            G CK G+
Sbjct: 263 NGYCKLGR 270


>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
          Length = 586

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 139/294 (47%), Gaps = 36/294 (12%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           +++I+  L R        ++L +L+ D   +P  + F +VI  Y +A  LE A+ ++++M
Sbjct: 292 HNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDM 351

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
            +  +      +N L+N     G L    E++Q M +    PD  +++ LI G     +L
Sbjct: 352 VASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQL 411

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           +DA +++ +M + R+QP + TF  +I+ LC + R DEA+ L  ++    N++PD      
Sbjct: 412 DDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICLLNEL----NLRPD------ 461

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
                                    I   A IY+ +I  L K G+ +E   I K M+E+G
Sbjct: 462 -------------------------IAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKG 496

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           C+P+  TY  LI G+C +     A     EM + GC  + I+ N  +  L K G
Sbjct: 497 CRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAG 550



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 133/293 (45%), Gaps = 2/293 (0%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           II  L R+    +  Q+  Q+       P       ++     A LL+ +  +  + S F
Sbjct: 153 IIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEF 212

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDACSYNILIHGCVVSRRLED 170
             ++    +N L++  +  G++  +  LF+  I ++  SPD  S+N++I G     +++ 
Sbjct: 213 GCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQK 272

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           A ++ + M +    P  VT   ++ GLC    V    ++   + R     P+   F S+I
Sbjct: 273 ALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVI 332

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
            G C  G+L  A+ V  +MV   I  +   Y+ LI+   K G       + ++M    C 
Sbjct: 333 SGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCP 392

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           P+ VT+++LI G+C+    + A  I  +M     + N  ++++I+  LCK  +
Sbjct: 393 PDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNR 445



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 79/159 (49%), Gaps = 1/159 (0%)

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
           + P+  +   +I  LC   R  +AL+L + +   Y   PD +  + L+        L  +
Sbjct: 143 ITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDAS 202

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL-KEMKERGCKPNSVTYNALIS 301
             +  +       ++A  Y+ L+S+L   GR ++  A+  + +++R   P+  ++N +I 
Sbjct: 203 ATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIK 262

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           G C+    + A  +++ M + GC  + +++N+I+ GLC+
Sbjct: 263 GVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCR 301


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 148/290 (51%), Gaps = 3/290 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ II    +  M  E  ++L         VP ++ +C++I        +ERAL++F+E 
Sbjct: 296 YNTIIDGYCKISMVQEATELLKDAVFKG-FVPDQVTYCSLINGLCAEGDVERALELFNEA 354

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGK-LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168
            +  ++  +  +N+L+      G  L  ++ + ++ E+   PD  +YNI+I+G      +
Sbjct: 355 QAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNI 414

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            DA  V ++ + +   P + TF TLI G C  L++D AL+L E  M  Y + PD   + S
Sbjct: 415 SDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVER-MWEYGIAPDTITYNS 473

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           ++ GLC  G+++      +EM+      +   Y+ LI    ++ +  E   ++ +M + G
Sbjct: 474 VLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEG 533

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             P++V++N LI GFC+  D E A+ +  ++ +KG  A   ++N ++G  
Sbjct: 534 LHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAF 583



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 146/299 (48%), Gaps = 5/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I  L +  M  E    L ++  +   +P +  +  +I  Y +  +++ A ++
Sbjct: 257 DVVTYNTLIRGLCKKSMPQEAMHYLRRMM-NQGCLPDDFTYNTIIDGYCKISMVQEATEL 315

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             +            + +L+N     G ++R  ELF +   K + PD   YN L+ G  +
Sbjct: 316 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 375

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED-IMRVYNVKPDG 223
              +  A +V +EM +    P + T+  +I GLC    + +A  +  D IM+ Y   PD 
Sbjct: 376 QGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGY--LPDV 433

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             F +LI G C   +L  AL + E M    I  D   Y+S+++ L KAG+ NE     +E
Sbjct: 434 FTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQE 493

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           M  +GC PN +TYN LI  FC+    E A  ++ +M  +G   + +S+N ++ G C++G
Sbjct: 494 MILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNG 552



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 132/248 (53%), Gaps = 7/248 (2%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK---LDRMKELFQIMEKYVSPDACSY 155
           L  A+++ D M ++ V   V + NTL+  +  C K    + M  L ++M +   PD  +Y
Sbjct: 240 LPEAVRLVDGMRAYAVPDVVTY-NTLI--RGLCKKSMPQEAMHYLRRMMNQGCLPDDFTY 296

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N +I G      +++A ++  + V +   P  VT+ +LI GLC E  V+ AL+L  +  +
Sbjct: 297 NTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNE-AQ 355

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
              +KPD  V+ SL+KGLC  G +  AL V  EM  +    D   Y+ +I+ L K G  +
Sbjct: 356 AKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNIS 415

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +   ++ +   +G  P+  T+N LI G+CK    ++A  +++ M + G   + I+YN +L
Sbjct: 416 DATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVL 475

Query: 336 GGLCKDGK 343
            GLCK GK
Sbjct: 476 NGLCKAGK 483



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 142/300 (47%), Gaps = 6/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL  Y++ I  L  A    E  +++  ++     VP  + +  +I    +  + + A+  
Sbjct: 223 NLFTYNIWIRGLCEAGRLPEAVRLVDGMR--AYAVPDVVTYNTLIRGLCKKSMPQEAMHY 280

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDACSYNILIHGCV 163
              M +         +NT+++       +    EL +  + + +V PD  +Y  LI+G  
Sbjct: 281 LRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFV-PDQVTYCSLINGLC 339

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
               +E A ++F+E   + ++P +V + +L+ GLCL+  +  AL++  + M      PD 
Sbjct: 340 AEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNE-MAEEGCHPDI 398

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
           Q +  +I GLC +G +S A  V  + +      D   +++LI    K  + +    +++ 
Sbjct: 399 QTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVER 458

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M E G  P+++TYN++++G CK            EM  KGC  NPI+YN+++   C+  K
Sbjct: 459 MWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNK 518



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           FNTL++      KLD   +L + M +Y ++PD  +YN +++G   + ++ +  + F EM+
Sbjct: 436 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 495

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
            +   P  +T+  LI   C   +++EA K+    M    + PD   F +LI G C  G+L
Sbjct: 496 LKGCHPNPITYNILIENFCRSNKMEEASKVIVK-MSQEGLHPDAVSFNTLIYGFCRNGDL 554

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA--ILKEMKERGCKPNSVTYN 297
             A  + +++        A  +++LI A   +G+ N   A  I  EM  +G + +S TY 
Sbjct: 555 EGAYLLFQKLEEKGYSATADTFNTLIGAF--SGKLNMHMAEKIFDEMLSKGHRADSYTYR 612

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKG 323
            LI G CK  + + A+  L EM  KG
Sbjct: 613 VLIDGSCKTANVDRAYMHLVEMIKKG 638



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 7/210 (3%)

Query: 132 GKLDRMKELFQIMEKYVSPDAC-SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           G+L    + F+ M+ +  P A  +YN ++   V +   + A KV+  M+   + P L T 
Sbjct: 67  GRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTH 126

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
              +   CL  R   AL+L   +     V      + +++ GL A G    A  + ++M+
Sbjct: 127 TIRLRSFCLTARPHIALRLLRALPHRGAV-----AYCTVVCGLYAHGHTHDARQLFDQML 181

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
              +  +   ++ ++ AL K G   E   +L ++ +RG   N  TYN  I G C+     
Sbjct: 182 HTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLP 241

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCK 340
            A  ++D M       + ++YN ++ GLCK
Sbjct: 242 EAVRLVDGMRAYAVP-DVVTYNTLIRGLCK 270



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 7/229 (3%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACS--YNILIHGCVVSRRLEDAWKV 174
           TV  +  L+ P  + G++D +          +SP      Y   I     + RL DA   
Sbjct: 16  TVPAYCALIRPLASAGRVDAVDAAVASARSRLSPATIHPLYVASIRAYARAGRLRDAVDA 75

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
           F+ M      P    +  ++  L      D+A K+   ++    V PD       ++  C
Sbjct: 76  FERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAA-GVSPDLHTHTIRLRSFC 134

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
                 +AL     ++R      A  Y +++  L+  G  ++   +  +M      PN  
Sbjct: 135 LTARPHIAL----RLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLA 190

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +N ++   CK  D   A  +L ++  +G   N  +YN+ + GLC+ G+
Sbjct: 191 AFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGR 239



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 90/180 (50%), Gaps = 6/180 (3%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LK    N + Y+++I    R+   +E  +++ ++  +  + P  + F  +I  + R   L
Sbjct: 496 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEG-LHPDAVSFNTLIYGFCRNGDL 554

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMKE-LF-QIMEKYVSPDACSYN 156
           E A  +F ++       T   FNTL+      GKL+  M E +F +++ K    D+ +Y 
Sbjct: 555 EGAYLLFQKLEEKGYSATADTFNTLIGA--FSGKLNMHMAEKIFDEMLSKGHRADSYTYR 612

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           +LI G   +  ++ A+    EM+K+   P++ TFG +I  L +  RV +A+ +   ++++
Sbjct: 613 VLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKI 672


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 169/368 (45%), Gaps = 73/368 (19%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+   ++++ +L +++  DE   I  Q+ +     P EI FC++I   G+   ++ A ++
Sbjct: 411 NVRTVNIMVDRLCKSQKLDEACAIFEQMDYKV-CTPDEITFCSLIDGLGKVGRVDDAYKI 469

Query: 106 FDEM--------SSFNVQMTVKFFN-----------------------TLLNPKLTC--- 131
           +++M        S     +   FFN                        LLN  + C   
Sbjct: 470 YEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFK 529

Query: 132 -GKLDRMKELFQ-IMEKYVSPDACSYNILIHG---------------------CVVSRR- 167
            G+ ++ + +F+ I  +   PDA SY+ILIHG                     CV+  R 
Sbjct: 530 AGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRA 589

Query: 168 -------------LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
                        +  A+++ +EM  +  +PT+VT+G++I GL    R+DEA  L E+  
Sbjct: 590 YNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEE-A 648

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           +   ++ +  +++SLI G   VG +  A  + EE+++  +  +   ++SL+ AL KA   
Sbjct: 649 KSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEI 708

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           NE     + MKE  C PN VTY  LI+G CK   F  AF    EM  +G K + ISY  +
Sbjct: 709 NEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTM 768

Query: 335 LGGLCKDG 342
           + GL K G
Sbjct: 769 ISGLAKAG 776



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 154/346 (44%), Gaps = 40/346 (11%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           ++ EA+ LKP   + + Y  +I  L +A   DE  ++   L+ + R VP    +  +I  
Sbjct: 262 HEIEANGLKP---DEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRR-VPCTYAYNTMIMG 317

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDA 152
           YG A   + A  + +   +     +V  +N +L      GK+D    +F+ M+K  +P+ 
Sbjct: 318 YGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDAAPNL 377

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YNILI     + +L+ A+++ D M K  L P + T   ++  LC   ++DEA  + E 
Sbjct: 378 STYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQ 437

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M      PD   F SLI GL  VG +  A  + E+M+      ++ +Y+SLI   F  G
Sbjct: 438 -MDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHG 496

Query: 273 RKNEFPAILKEMKERGCK-----------------------------------PNSVTYN 297
           RK +   I K+M  + C                                    P++ +Y+
Sbjct: 497 RKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYS 556

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            LI G  K       + +   M ++GC  +  +YN+++ G CK GK
Sbjct: 557 ILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGK 602



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 145/296 (48%), Gaps = 4/296 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ I+T L +    DE  ++  ++K D    P    +  +I    RA  L+ A ++
Sbjct: 342 SVIAYNCILTCLRKMGKVDEALRVFEEMKKDA--APNLSTYNILIDMLCRAGKLDCAFEL 399

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            D M    +   V+  N +++      KLD    +F+ M+ K  +PD  ++  LI G   
Sbjct: 400 RDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGK 459

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R++DA+K++++M+    +   + + +LI       R ++  K+ +D++   N  PD Q
Sbjct: 460 VGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVN-QNCSPDLQ 518

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           +  + +  +   GE      + EE+   +   DA  YS LI  L KAG  NE   +   M
Sbjct: 519 LLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSM 578

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           KE+GC  ++  YN +I GFCK      A+ +L+EM  KG +   ++Y  ++ GL K
Sbjct: 579 KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAK 634



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 156/338 (46%), Gaps = 11/338 (3%)

Query: 10  CLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRY--NLLHYDLIITKLGRAKMFDEMQ 67
           C P LQ        +FK   P         +K  R+  +   Y ++I  L +A   +E  
Sbjct: 513 CSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETY 572

Query: 68  QILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127
           ++ + +K    ++     +  VI  + +   + +A Q+ +EM +   + TV  + ++++ 
Sbjct: 573 ELFYSMKEQGCVLDTRA-YNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDG 631

Query: 128 KLTCGKLDRMKELFQIME----KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
                K+DR+ E + + E    K +  +   Y+ LI G     R+++A+ + +E++++ L
Sbjct: 632 ---LAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGL 688

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P + T+ +L+  L     ++EAL   +  M+     P+   +  LI GLC V + + A 
Sbjct: 689 TPNVYTWNSLLDALVKAEEINEALVCFQS-MKELKCTPNQVTYGILINGLCKVRKFNKAF 747

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
              +EM +  ++     Y+++IS L KAG   E  A+    K  G  P+S  YNA+I G 
Sbjct: 748 VFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGL 807

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
                   AF++ +E   +G   +  +  V+L  L K+
Sbjct: 808 SNGNRAMDAFSLFEETRRRGLHIHNKTCVVLLDTLHKN 845



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 140/296 (47%), Gaps = 17/296 (5%)

Query: 49  HYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDE 108
           H D+++T      +F +MQ++ ++        P   +F  +I  + +   ++ AL + DE
Sbjct: 183 HSDMMLT------LFQQMQELGYE--------PTVHLFTTLIRGFAKEGRVDSALSLLDE 228

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRR 167
           M S ++   +  +N  ++     GK+D   + F  +E   + PD  +Y  +I     + R
Sbjct: 229 MKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANR 288

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           L++A ++F+ + K R  P    + T+I G     + DEA  L E   R     P    + 
Sbjct: 289 LDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLER-QRAKGSIPSVIAYN 347

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            ++  L  +G++  AL V EEM +D    +   Y+ LI  L +AG+ +    +   M++ 
Sbjct: 348 CILTCLRKMGKVDEALRVFEEMKKDAAP-NLSTYNILIDMLCRAGKLDCAFELRDSMQKA 406

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G  PN  T N ++   CK +  + A  I ++M  K C  + I++  ++ GL K G+
Sbjct: 407 GLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGR 462



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 124/265 (46%), Gaps = 5/265 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    +  +IG +      +  L +F +M     + TV  F TL+      G++D    L
Sbjct: 166 PAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSL 225

Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
              M+   +  D   YN+ I       +++ AWK F E+    L+P  VT+ ++I  LC 
Sbjct: 226 LDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCK 285

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R+DEA+++ E + +   V P    + ++I G  + G+   A  + E   R K  + + 
Sbjct: 286 ANRLDEAVEMFEHLEKNRRV-PCTYAYNTMIMGYGSAGKFDEAYSLLERQ-RAKGSIPSV 343

Query: 260 I-YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
           I Y+ +++ L K G+ +E   + +EMK +   PN  TYN LI   C+    + AF + D 
Sbjct: 344 IAYNCILTCLRKMGKVDEALRVFEEMK-KDAAPNLSTYNILIDMLCRAGKLDCAFELRDS 402

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M   G   N  + N+++  LCK  K
Sbjct: 403 MQKAGLFPNVRTVNIMVDRLCKSQK 427



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 119/246 (48%), Gaps = 9/246 (3%)

Query: 106 FDEMSSFNVQMTVKFF----NTLLNPKLTCGKLDRMKELFQI---MEKY-VSPDACSYNI 157
           FD +     +M+V  F    NT +   L+C K ++++E F +   M K+   P   +Y  
Sbjct: 114 FDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFDVVQNMRKFKFRPAFSAYTT 173

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI         +    +F +M +   +PT+  F TLI G   E RVD AL L ++ M+  
Sbjct: 174 LIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDE-MKSS 232

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           ++  D  ++   I     VG++ +A     E+  + ++ D   Y+S+I  L KA R +E 
Sbjct: 233 SLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEA 292

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + + +++    P +  YN +I G+     F+ A+++L+    KG   + I+YN IL  
Sbjct: 293 VEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTC 352

Query: 338 LCKDGK 343
           L K GK
Sbjct: 353 LRKMGK 358



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 97/229 (42%), Gaps = 23/229 (10%)

Query: 127 PKLTCGKLDRMK------ELFQIMEKYVSPDAC--SYNILIHGCVVSRRLEDAWKVFDEM 178
           P+   G L R+K      E F+  E+      C  SYN L+      R  +   ++  EM
Sbjct: 65  PEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEM 124

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVD--EALKLKEDI-----MRVYNVKPDGQVFASLIK 231
                 P++ T        C+E+ +   +A KL+E       MR +  +P    + +LI 
Sbjct: 125 SVAGFGPSVNT--------CIEMVLSCVKANKLREGFDVVQNMRKFKFRPAFSAYTTLIG 176

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
              AV    + L + ++M     E    ++++LI    K GR +   ++L EMK      
Sbjct: 177 AFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDA 236

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + V YN  I  F K    + A+    E+   G K + ++Y  ++G LCK
Sbjct: 237 DIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCK 285


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 161/345 (46%), Gaps = 27/345 (7%)

Query: 13  RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ 72
           R Q D   AL+L    +  PN         FR N   Y+ I+ KLG+   F+ M+ IL +
Sbjct: 62  RRQNDETAALRLLSWASKQPN---------FRPNSSIYEEILRKLGKVGSFNSMKDILQE 112

Query: 73  LKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS-SFNVQMTVKFFNTLLNPKLTC 131
           +K     + + ++    I  Y +  L E  L + + M   F + +    +N LLN  +  
Sbjct: 113 MKGLDCQIDRGVLLI-FIDSYAKFELYEEILCIVEVMEVEFGLALDTLLYNFLLNVLVDG 171

Query: 132 GKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
            KL  ++ +   M  K + PD  ++NILI     + ++  A  V +EM    L P   TF
Sbjct: 172 NKLKLVENVHSTMVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTF 231

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRV-------------YNVKPDGQV--FASLIKGLCA 235
            TL+ G   E  +D A ++KE ++               +    +G++    S I  +  
Sbjct: 232 TTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSN 291

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G+ ++A+ +  EM     + D   Y+ LI +L   G+  E   +L+EM+  GC  N +T
Sbjct: 292 EGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVIT 351

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           YN LI GFCK +  E A  I D+M  +G   N ++YN ++ GLCK
Sbjct: 352 YNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCK 396



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 120/242 (49%), Gaps = 2/242 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIH 160
           A+++++EM +   Q     +N L++     GKL     L + ME    + +  +YN LI 
Sbjct: 298 AIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLID 357

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G   ++++E+A ++FD+M  + L    VT+ TLI GLC   RV EA +L  D M +  +K
Sbjct: 358 GFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLM-DQMIMEGLK 416

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   + S++   C  G++  A  + + M  +  E D   Y +LI  L KAGR      +
Sbjct: 417 PDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRL 476

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L+ ++ +G       YN +I    K +  + A  +  EM +KG   +  +Y ++  GL  
Sbjct: 477 LRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVFRGLSN 536

Query: 341 DG 342
            G
Sbjct: 537 SG 538



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 116/251 (46%), Gaps = 22/251 (8%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQ-MTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS 149
           GF    R+ E AL   DEMS+     M ++ +N + N                   K   
Sbjct: 272 GFCKEGRI-EEALSFIDEMSNEGKHTMAIELYNEMKN-------------------KGCQ 311

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PD  +YN+LI       +L++A  +  EM        ++T+ TLI G C   +++EA ++
Sbjct: 312 PDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEI 371

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
             D M +  +  +   + +LI GLC    +  A  + ++M+ + ++ D   Y+S+++   
Sbjct: 372 F-DQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFC 430

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           + G   +   I++ M   GC+P+ VTY  LI G CK    E A  +L  +  KG    P 
Sbjct: 431 REGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPH 490

Query: 330 SYNVILGGLCK 340
           +YN ++  L K
Sbjct: 491 AYNPVIQALFK 501



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 212 DIMRV-YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
           ++M V + +  D  ++  L+  L    +L L   V   MV   I+ D   ++ LI AL K
Sbjct: 146 EVMEVEFGLALDTLLYNFLLNVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCK 205

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
           A +      +++EM   G  P+  T+  L+ GF +E + + AF + ++M D GC    ++
Sbjct: 206 AHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVT 265

Query: 331 YNVILGGLCKDGK 343
            NV++ G CK+G+
Sbjct: 266 VNVLVHGFCKEGR 278



 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 97/237 (40%), Gaps = 41/237 (17%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y+ +I  L +++   E  Q++ Q+  +  + P +  + +++ ++ R   +++A  +
Sbjct: 383 NSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEG-LKPDKFTYNSMLTYFCREGDIQKAADI 441

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLD------------------------------ 135
              M+S   +  +  + TL+      G+++                              
Sbjct: 442 VQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFK 501

Query: 136 --RMKE---LFQIME-KYVSPDACSYNILIHGCVVSRR-LEDAWKVFDEMVKRRLQPTLV 188
             R KE   LF+ ME K  +PDA +Y I+  G   S   + +A     EM+++   P   
Sbjct: 502 RKRTKEAMRLFREMEEKGNTPDAFTYKIVFRGLSNSGGPIGEAVDFVIEMIEKGFLPEFS 561

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
           +F  L  GLC     D  +KL + +M   N   +  V   +I+G   + +   AL  
Sbjct: 562 SFYMLAEGLCSLSMEDTLIKLVDLVMEKANFSQNEVV---MIRGFLKIRKFQDALAT 615


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 154/320 (48%), Gaps = 19/320 (5%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  +   Y  +IT L  A   ++   +  ++K    + P    +  +I  + +A L+E
Sbjct: 282 KGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKM-VGVTPDVYTYTILIDSFCKAGLIE 340

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
           +A  +F+EM S     TV  +  L++  L   ++ +  ++F  M +    P+  +Y  L+
Sbjct: 341 QAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALV 400

Query: 160 HGCVVSRRLEDAWKVFDEMV----------------KRRLQPTLVTFGTLIYGLCLELRV 203
            G   +  +  A++V+ +++                +  L P +VT+G L+ GLC   +V
Sbjct: 401 DGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKV 460

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
           D A +L  D M     +P+  V+ +LI G C  G++  A  V  +M +         Y+S
Sbjct: 461 DHAHELL-DAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTS 519

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LI  +FK GR +    +L +M +  C PN VTY A+I G C+  + E A  +L  M +KG
Sbjct: 520 LIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG 579

Query: 324 CKANPISYNVILGGLCKDGK 343
           C  N ++Y  ++ GL K GK
Sbjct: 580 CSPNVVTYTALIDGLGKAGK 599



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 133/299 (44%), Gaps = 13/299 (4%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           +I+ L  A  FDE    LH+++ ++  +P  + +  ++  + + + L    ++ + M + 
Sbjct: 113 MISGLMEASYFDEAMSFLHRMRCNS-CIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTE 171

Query: 113 NVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
                   FN+L++    C + D     K L ++      P    YNI I       +L 
Sbjct: 172 GCNPNPSLFNSLVHSY--CNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLP 229

Query: 170 D------AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
                  A K++ EM+        V        LC   + D+A +L +++MR   V PD 
Sbjct: 230 SPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFV-PDT 288

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             ++ +I  LC   ++  A  + +EM    +  D   Y+ LI +  KAG   +   + +E
Sbjct: 289 STYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEE 348

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           M+  GC P  VTY ALI  + K +    A  I   M D GC+ N ++Y  ++ GLCK G
Sbjct: 349 MRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAG 407



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 133/291 (45%), Gaps = 19/291 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            ++ Y  +I    +AK   +   I H++  D    P ++ +  ++    +A  + +A ++
Sbjct: 357 TVVTYTALIHAYLKAKQVPQANDIFHRMV-DAGCRPNDVTYGALVDGLCKAGNISKAFEV 415

Query: 106 FDEMSSFNVQMTVKFF------NTLLNPKLTCG----------KLDRMKELFQIM-EKYV 148
           + ++   +      F+      +TL    +T G          K+D   EL   M     
Sbjct: 416 YAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGC 475

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
            P+   Y+ LI G   + +++ A +VF +M K    P++ T+ +LI  +  + R+D A+K
Sbjct: 476 EPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMK 535

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           +   +++  +  P+   + ++I GLC +GE   AL +   M       +   Y++LI  L
Sbjct: 536 VLSQMLKD-SCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGL 594

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            KAG+ +    +  +M  +GC PN VTY  LI+  C     + A  +L EM
Sbjct: 595 GKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEM 645



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 4/194 (2%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P   +YN L+     + +++  ++V  EM +        T G   + LC E R  +AL  
Sbjct: 38  PSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADAL-- 95

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
             D++   + K D  +   +I GL        A+     M  +    +   Y +L+S   
Sbjct: 96  --DMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFL 153

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           K  +      I+  M   GC PN   +N+L+  +C E+D+  A+ +L+ M   GC    +
Sbjct: 154 KKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYV 213

Query: 330 SYNVILGGLCKDGK 343
            YN+ +G +C   K
Sbjct: 214 VYNIFIGSICGQEK 227



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 126/286 (44%), Gaps = 17/286 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + YD +I    +A   D  Q++  Q+      +P    + ++I    +   L+ A+++
Sbjct: 478 NHIVYDALIDGFCKAGKIDSAQEVFLQMT-KCGYLPSVHTYTSLIDRMFKDGRLDLAMKV 536

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
             +M   +    V  +  +++     G+ ++  +L  +ME K  SP+  +Y  LI G   
Sbjct: 537 LSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGK 596

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + +++ +  +F +M ++   P  VT+  LI  LC    +D+A  L  ++ + Y       
Sbjct: 597 AGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTY------- 649

Query: 225 VFASLIKGL-CAVGELS----LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            +   ++G  CA+   S     +LG+ EEM        A +Y  LI    KAGR      
Sbjct: 650 -WPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAME 708

Query: 280 ILKEMKE--RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           + KEM E     K ++  Y +LI   C     E AF +  EM  +G
Sbjct: 709 LHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRG 754



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 32/164 (19%)

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV------------------- 250
            ED ++ +  +P    + +L++ L + G++ L   V++EM                    
Sbjct: 27  SEDPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALC 86

Query: 251 -------------RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
                        R+  ++D  + + +IS L +A   +E  + L  M+   C PN VTY 
Sbjct: 87  KEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYR 146

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            L+SGF K++       I++ M  +GC  NP  +N ++   C +
Sbjct: 147 TLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNE 190



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y ++I  L  A + D+ + +L ++K        +   C + GF   ++    +L +
Sbjct: 618 NYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGF---SKSFIASLGI 674

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIME--KYVSPDACSYNILIHGC 162
            +EM S+        +  L++     G+L+   EL  ++ME    V  D   Y  LI   
Sbjct: 675 LEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQAL 734

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
            ++ ++E+A++++ EM +R   P L  F  LI GL    + DEAL+L
Sbjct: 735 CLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQL 781



 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M+R +    A + +SL      A   +E P     +K+ G +P+ VTYNAL+        
Sbjct: 1   MIRRRAAAVATLRASLRRTCSHAAGDSEDP-----LKDFGYRPSKVTYNALVQVLSSAGQ 55

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +  F +  EM + G   +  +       LCK+G+
Sbjct: 56  VDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR 90


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 160/303 (52%), Gaps = 5/303 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV-PKEIIFCNVIGFYGRARLLER 101
           F  N + Y  +I  L +        Q+L ++  D ++V P  +++  +I    + +L+  
Sbjct: 173 FHLNKVSYGTLINGLCKVGQTSAALQLLRRV--DGKLVQPNVVMYNTIIDSMCKVKLVNE 230

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           A  ++ EM S  +   V  +N L++     GK+    +LF +++ + ++P+  ++NIL+ 
Sbjct: 231 AFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVD 290

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G    RRL++A  V   M+K+ ++P + T+ +L+   CL   V++A  +   I +   V 
Sbjct: 291 GFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQ-RGVN 349

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   ++ +I G C + ++  A+ + +EM  + I  D   Y+SLI  L K G+ +    +
Sbjct: 350 PNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKL 409

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + EM +RG   + +TYN+++   CK    + A  +L +M D+G + +  +Y  ++ GLCK
Sbjct: 410 VDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCK 469

Query: 341 DGK 343
           +G+
Sbjct: 470 NGR 472



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 137/279 (49%), Gaps = 3/279 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  +++++    + +   E + +L  +     I P    + +++  Y   + + +A  +
Sbjct: 281 NVYTFNILVDGFCKERRLKEAKNVLAMMMKQG-IKPDVFTYNSLMDRYCLVKEVNKAKHI 339

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           F+ +S   V   +  ++ +++      K+D    LF+ M    + PD  +YN LI G   
Sbjct: 340 FNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCK 399

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             ++  A K+ DEM  R +    +T+ +++  LC   +VD+A+ L    M+   ++PD  
Sbjct: 400 LGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTK-MKDEGIQPDIC 458

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +L+ GLC  G L  A  V E+++     +D  IY+++I      G  +E   +L +M
Sbjct: 459 TYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKM 518

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +E GC PN+VTY  +I     +++ + A  +L EM  +G
Sbjct: 519 EENGCIPNAVTYEIIICSLFDKDENDKAEKLLREMITRG 557



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 5/202 (2%)

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L +I++    P+  +   LI G  +  ++  A +  D++V        V++GTLI GLC 
Sbjct: 130 LAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCK 189

Query: 200 ELRVDEALKLKEDIMRVYN--VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
             +   AL+L   + RV    V+P+  ++ ++I  +C V  ++ A  +  EMV   I  D
Sbjct: 190 VGQTSAALQL---LRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPD 246

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y++LIS     G+  +   +  +M      PN  T+N L+ GFCKE   + A  +L 
Sbjct: 247 VVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLA 306

Query: 318 EMGDKGCKANPISYNVILGGLC 339
            M  +G K +  +YN ++   C
Sbjct: 307 MMMKQGIKPDVFTYNSLMDRYC 328



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 65/124 (52%)

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +P+     +LIKGLC  G++  AL   +++V     ++   Y +LI+ L K G+ +    
Sbjct: 139 EPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQ 198

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +L+ +  +  +PN V YN +I   CK +    AF +  EM  KG   + ++YN ++ G C
Sbjct: 199 LLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFC 258

Query: 340 KDGK 343
             GK
Sbjct: 259 IVGK 262



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%)

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N KP    F  ++  L      S  + +  +M  + I  D  I S LI+   + G+    
Sbjct: 67  NPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQLGQNPLS 126

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            ++L ++ + G +PN +T   LI G C +     A    D++   G   N +SY  ++ G
Sbjct: 127 FSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLING 186

Query: 338 LCKDGK 343
           LCK G+
Sbjct: 187 LCKVGQ 192



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 1/157 (0%)

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
           +P++  FG ++  L         + L    M    +  D  + + LI     +G+  L+ 
Sbjct: 69  KPSIFQFGKILGSLVKSNHYSTVVSLHRQ-MEFNGITSDLVILSILINCFSQLGQNPLSF 127

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            V  ++++   E +    ++LI  L   G+ ++      ++   G   N V+Y  LI+G 
Sbjct: 128 SVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGL 187

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           CK     AA  +L  +  K  + N + YN I+  +CK
Sbjct: 188 CKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCK 224


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 154/320 (48%), Gaps = 19/320 (5%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  +   Y  +IT L  A   ++   +  ++K    + P    +  +I  + +A L+E
Sbjct: 282 KGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKM-VGVTPDVYTYTILIDSFCKAGLIE 340

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
           +A  +F+EM S     TV  +  L++  L   ++ +  ++F  M +    P+  +Y  L+
Sbjct: 341 QAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALV 400

Query: 160 HGCVVSRRLEDAWKVFDEMV----------------KRRLQPTLVTFGTLIYGLCLELRV 203
            G   +  +  A++V+ +++                +  L P +VT+G L+ GLC   +V
Sbjct: 401 DGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKV 460

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
           D A +L  D M     +P+  V+ +LI G C  G++  A  V  +M +         Y+S
Sbjct: 461 DHAHELL-DAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTS 519

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LI  +FK GR +    +L +M +  C PN VTY A+I G C+  + E A  +L  M +KG
Sbjct: 520 LIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG 579

Query: 324 CKANPISYNVILGGLCKDGK 343
           C  N ++Y  ++ GL K GK
Sbjct: 580 CSPNVVTYTALIDGLGKAGK 599



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 133/299 (44%), Gaps = 13/299 (4%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           +I+ L  A  FDE    LH+++ ++  +P  + +  ++  + + + L    ++ + M + 
Sbjct: 113 MISGLMEASYFDEAMSFLHRMRCNS-CIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTE 171

Query: 113 NVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
                   FN+L++    C + D     K L ++      P    YNI I       +L 
Sbjct: 172 GCNPNPSLFNSLVHS--YCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLP 229

Query: 170 D------AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
                  A K++ EM+        V        LC   + D+A +L +++MR   V PD 
Sbjct: 230 SPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFV-PDT 288

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             ++ +I  LC   ++  A  + +EM    +  D   Y+ LI +  KAG   +   + +E
Sbjct: 289 STYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEE 348

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           M+  GC P  VTY ALI  + K +    A  I   M D GC+ N ++Y  ++ GLCK G
Sbjct: 349 MRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAG 407



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 133/291 (45%), Gaps = 19/291 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            ++ Y  +I    +AK   +   I H++  D    P ++ +  ++    +A  + +A ++
Sbjct: 357 TVVTYTALIHAYLKAKQVPQANDIFHRMV-DAGCRPNDVTYGALVDGLCKAGNISKAFEV 415

Query: 106 FDEMSSFNVQMTVKFF------NTLLNPKLTCG----------KLDRMKELFQIM-EKYV 148
           + ++   +      F+      +TL    +T G          K+D   EL   M     
Sbjct: 416 YAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGC 475

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
            P+   Y+ LI G   + +++ A +VF +M K    P++ T+ +LI  +  + R+D A+K
Sbjct: 476 EPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMK 535

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           +   +++  +  P+   + ++I GLC +GE   AL +   M       +   Y++LI  L
Sbjct: 536 VLSQMLKD-SCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGL 594

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            KAG+ +    +  +M  +GC PN VTY  LI+  C     + A  +L EM
Sbjct: 595 GKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEM 645



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 4/194 (2%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P   +YN L+     + +++  ++V  EM +        T G   + LC E R  +AL  
Sbjct: 38  PSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADAL-- 95

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
             D++   + K D  +   +I GL        A+     M  +    +   Y +L+S   
Sbjct: 96  --DMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFL 153

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           K  +      I+  M   GC PN   +N+L+  +C E+D+  A+ +L+ M   GC    +
Sbjct: 154 KKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYV 213

Query: 330 SYNVILGGLCKDGK 343
            YN+ +G +C   K
Sbjct: 214 VYNIFIGSICGQEK 227



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 126/286 (44%), Gaps = 17/286 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + YD +I    +A   D  Q++  Q+      +P    + ++I    +   L+ A+++
Sbjct: 478 NHIVYDALIDGFCKAGKIDSAQEVFLQMT-KCGYLPSVHTYTSLIDRMFKDGRLDLAMKV 536

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
             +M   +    V  +  +++     G+ ++  +L  +ME K  SP+  +Y  LI G   
Sbjct: 537 LSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGK 596

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + +++ +  +F +M ++   P  VT+  LI  LC    +D+A  L  ++ + Y       
Sbjct: 597 AGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTY------- 649

Query: 225 VFASLIKGL-CAVGELS----LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            +   ++G  CA+   S     +LG+ EEM        A +Y  LI    KAGR      
Sbjct: 650 -WPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAME 708

Query: 280 ILKEMKE--RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           + KEM E     K ++  Y +LI   C     E AF +  EM  +G
Sbjct: 709 LHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRG 754



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 32/164 (19%)

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV------------------- 250
            ED ++ +  +P    + +L++ L + G++ L   V++EM                    
Sbjct: 27  SEDPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALC 86

Query: 251 -------------RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
                        R+  ++D  + + +IS L +A   +E  + L  M+   C PN VTY 
Sbjct: 87  KEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYR 146

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            L+SGF K++       I++ M  +GC  NP  +N ++   C +
Sbjct: 147 TLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNE 190



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y ++I  L  A + D+ + +L ++K        +   C + GF   ++    +L +
Sbjct: 618 NYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGF---SKSFIASLGI 674

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIME--KYVSPDACSYNILIHGC 162
            +EM S+        +  L++     G+L+   EL  ++ME    V  D   Y  LI   
Sbjct: 675 LEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQAL 734

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
            ++ ++E+A++++ EM +R   P L  F  LI GL    + DEAL+L
Sbjct: 735 CLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQL 781



 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M+R +    A + +SL      A   +E P     +K+ G +P+ VTYNAL+        
Sbjct: 1   MIRRRAAAVATLRASLRRTCSHAAGDSEDP-----LKDFGYRPSKVTYNALVQVLSSAGQ 55

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +  F +  EM + G   +  +       LCK+G+
Sbjct: 56  VDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR 90


>gi|449505568|ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Cucumis sativus]
          Length = 614

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 154/302 (50%), Gaps = 8/302 (2%)

Query: 42  PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLER 101
           P+R++   Y+ ++  LG+AK F  M +++ ++ H    V  E +   VI    RA   + 
Sbjct: 225 PYRHSPESYNSMVDILGKAKNFRLMWELVDEMNHLAGSVSLETM-SKVIRRLARAGRHQE 283

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161
           A+  F  +  + +       N L++  +    ++    +F+ ++  +  +  S+N+LIHG
Sbjct: 284 AIHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHG 343

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE---LRVDEALKLKEDIMRVYN 218
              +++L++AWK+  E+ K  L+P ++++   I   C E     VD+ L      M    
Sbjct: 344 YCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQ----MEHKG 399

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
            KP+   F  ++  L    +++ AL V E+M ++    D+  YSSLI  L KAGR  +  
Sbjct: 400 CKPNVITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVK 459

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            I+++M+++G  P+ +TYN LIS  C     E A T+L +M +  CK +  +Y+ +L   
Sbjct: 460 EIVEDMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMF 519

Query: 339 CK 340
           C+
Sbjct: 520 CR 521



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 121/259 (46%), Gaps = 9/259 (3%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +NL  ++++I    +AK  DE  +I+ +++  + + P  I +   I  + R +      +
Sbjct: 332 FNLASFNVLIHGYCKAKKLDEAWKIMGEVE-KSGLEPDVISYTAFIEAHCREKDFRNVDK 390

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIH 160
           +  +M     +  V  F  +++     GK  ++ E  ++ EK       PD+  Y+ LI 
Sbjct: 391 VLVQMEHKGCKPNVITFTIIMH---ALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIF 447

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
               + RL D  ++ ++M K+ + P ++T+ TLI   C   + + AL L   +  V + K
Sbjct: 448 ILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEV-SCK 506

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD + +  L+K  C    + +   + + M ++ + ++AG Y+ L+  L + G+ +   + 
Sbjct: 507 PDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSIEAGTYAILVRGLCENGKLHLACSF 566

Query: 281 LKEMKERGCKPNSVTYNAL 299
             EM  +   P   T+  L
Sbjct: 567 FGEMLSKAMVPKDSTFKML 585


>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 159/305 (52%), Gaps = 12/305 (3%)

Query: 41  KPFRYNLLHYDLIITKL---GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           K F+ +L  Y+ I++ +   GRA       ++L ++K    +VP  + +  +I       
Sbjct: 290 KGFQPDLQTYNPILSWMCNEGRA------SEVLREMK-GIGLVPDSVSYNILIRGCSNNG 342

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYN 156
            LE A    DEM    +  T   +NTL++      K++  + L  +I EK +  D+ +YN
Sbjct: 343 DLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYN 402

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           I+I+G       + A+ + DEM+   ++PT  T+ +LIY LC   +  EA +L E ++  
Sbjct: 403 IVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVG- 461

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             +KPD  +  +L+ G CA G +  A  + +EM R  I+ D   Y+ L+  L   G+  E
Sbjct: 462 KGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEE 521

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              ++ EMK RG KP+ ++YN LISG+ K+ D + AF + DEM   G     ++YN +L 
Sbjct: 522 ARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFIVRDEMLSLGFNPTLLTYNALLK 581

Query: 337 GLCKD 341
           GL K+
Sbjct: 582 GLSKN 586



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 143/295 (48%), Gaps = 6/295 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           +D ++    + +M DE  +  + +K +    PK     +++    R   +E A   + +M
Sbjct: 159 FDFMVRFYCQLRMVDEAIECFYLMK-EKGFDPKTETCNHILSLLSRLNRIENAWVFYADM 217

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
               ++  V  FN ++N     GKL + K    IME + + P   +YN L+ G  +  R+
Sbjct: 218 YRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGRI 277

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E A  +  EM  +  QP L T+  ++  +C E R  E L+     M+   + PD   +  
Sbjct: 278 EGARMIISEMKSKGFQPDLQTYNPILSWMCNEGRASEVLRE----MKGIGLVPDSVSYNI 333

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI+G    G+L  A   ++EMV+  +      Y++LI  LF   +      +++E++E+G
Sbjct: 334 LIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKG 393

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              +SVTYN +I+G+C+  D + AF + DEM   G K    +Y  ++  LC+  K
Sbjct: 394 IVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNK 448



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 137/266 (51%), Gaps = 5/266 (1%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + +  ++  Y     +E A  +  EM S   Q  ++ +N +L+     G   R  
Sbjct: 257 IKPTIVTYNTLVQGYSLRGRIEGARMIISEMKSKGFQPDLQTYNPILSWMCNEG---RAS 313

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           E+ + M+   + PD+ SYNILI GC  +  LE A+   DEMVK+ + PT  T+ TLI+GL
Sbjct: 314 EVLREMKGIGLVPDSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGL 373

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
            +E +++ A  L  +I R   +  D   +  +I G C  G+   A  + +EM+ D I+  
Sbjct: 374 FMENKIEAAEILIREI-REKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPT 432

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+SLI  L +  +  E   + +++  +G KP+ V  N L+ G C   + + AF++L 
Sbjct: 433 QFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLK 492

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
           EM       + ++YN ++ GLC +GK
Sbjct: 493 EMDRMNIDPDDVTYNCLMRGLCGEGK 518



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 115/245 (46%), Gaps = 2/245 (0%)

Query: 65  EMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124
           E  +IL +   +  IV   + +  VI  Y +    ++A  + DEM +  ++ T   + +L
Sbjct: 380 EAAEILIREIREKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSL 439

Query: 125 LNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
           +       K     ELF+ ++ K + PD    N L+ G   +  ++ A+ +  EM +  +
Sbjct: 440 IYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNI 499

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P  VT+  L+ GLC E + +EA +L  ++ R   +KPD   + +LI G    G+   A 
Sbjct: 500 DPDDVTYNCLMRGLCGEGKFEEARELMGEMKR-RGIKPDHISYNTLISGYSKKGDTKHAF 558

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            V++EM+          Y++L+  L K         +L+EMK  G  PN  ++ ++I   
Sbjct: 559 IVRDEMLSLGFNPTLLTYNALLKGLSKNQDGELAEELLREMKSEGIVPNDSSFCSVIEAM 618

Query: 304 CKEED 308
            K ++
Sbjct: 619 SKSDN 623


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 149/293 (50%), Gaps = 13/293 (4%)

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
           + E QQ+L ++    +I P  + +  +I  + +      A +++DEM    +  +   ++
Sbjct: 271 WSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYS 330

Query: 123 TLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
           ++++      +LD  + +F +M  K  SPD  ++N LI G   ++R++D  K+  EM + 
Sbjct: 331 SMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEA 390

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
            L    +T+ TLI+G C    ++ A  L ++ M    V P+     +L+ GLC  G+L  
Sbjct: 391 GLVANTITYTTLIHGFCQVGDLNAAQDLLQE-MVSSGVCPNVVTCNTLLDGLCDNGKLKD 449

Query: 242 ALGVKEEMVRDKIEMDAG-----------IYSSLISALFKAGRKNEFPAILKEMKERGCK 290
           AL + + M + K+++DA             Y+ LIS L   G+  E   + +EM  RG  
Sbjct: 450 ALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIV 509

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           P+++TYN++I G CK+   + A  + D MG K    N +++  ++ G CK G+
Sbjct: 510 PDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGR 562



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 149/300 (49%), Gaps = 25/300 (8%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF------YGRARLLERALQMF 106
           ++ ++GR  +   + +     K + R VP     CN   F      +     L  AL  F
Sbjct: 87  VVVRMGRLDVVISLHR-----KMEMRRVP-----CNAYSFTILMKCFCSCSKLPFALSTF 136

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSR 166
            +++      TV  F+TLL+    C + DR+ E   +  +   P+  ++  L++G     
Sbjct: 137 GKITKLGFHPTVVTFSTLLHG--LCVE-DRISEALDLFHQMCKPNVVTFTTLMNGLCREG 193

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           R+ +A  + D M++  LQP  +T+GT++ G+C       AL L   +  V ++KP+  ++
Sbjct: 194 RVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIW 253

Query: 227 -----ASLIKGLCAVGELSLALGVKEEMV-RDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
                  +I G C+ G  S A  + +EM+ R KI  D   Y++LI+A  K G+  E   +
Sbjct: 254 PLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEEL 313

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             EM  RG  P+++TY+++I GFCK+   +AA  +   M  KGC  + I++N ++ G C+
Sbjct: 314 YDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCR 373



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 143/286 (50%), Gaps = 14/286 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ ++ +I    RAK  D+  ++LH++  +  +V   I +  +I  + +   L  A  +
Sbjct: 360 DIITFNTLIAGYCRAKRVDDGIKLLHEMT-EAGLVANTITYTTLIHGFCQVGDLNAAQDL 418

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY------------VSPDAC 153
             EM S  V   V   NTLL+     GKL    E+F+ M+K             V PD  
Sbjct: 419 LQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQ 478

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YNILI G +   +  +A ++++EM  R + P  +T+ ++I+GLC + R+DEA ++  D 
Sbjct: 479 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMF-DS 537

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M   +  P+   F +LI G C  G +   L +  EM R  I  +A  Y +LI    K G 
Sbjct: 538 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGN 597

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            N    I +EM   G  P+++T   +++G   +E+ + A  +L+++
Sbjct: 598 INGALDIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLEDL 643



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 144/308 (46%), Gaps = 12/308 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I    +   F E +++  ++     I+P  I + ++I  + +   L+ A  M
Sbjct: 290 DVVTYNALINAFVKEGKFFEAEELYDEML-PRGIIPSTITYSSMIDGFCKQNRLDAAEHM 348

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVV 164
           F  M++      +  FNTL+       ++D  +K L ++ E  +  +  +Y  LIHG   
Sbjct: 349 FYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQ 408

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL---------KLKEDIMR 215
              L  A  +  EMV   + P +VT  TL+ GLC   ++ +AL         K+  D   
Sbjct: 409 VGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASH 468

Query: 216 VYN-VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
            +N V+PD Q +  LI GL   G+   A  + EEM    I  D   Y+S+I  L K  R 
Sbjct: 469 PFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRL 528

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +E   +   M  +   PN VT+  LI+G+CK    +    +  EMG +G  AN I+Y  +
Sbjct: 529 DEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITL 588

Query: 335 LGGLCKDG 342
           + G  K G
Sbjct: 589 IHGFRKVG 596



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 137/296 (46%), Gaps = 49/296 (16%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVS 149
           GF+   + LE A+ +F +M       +V  F  L+   +  G+LD +  L + ME + V 
Sbjct: 52  GFH-EIKGLEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVP 110

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
            +A S+ IL+       +L  A   F ++ K    PT+VTF TL++GLC+E R+ EAL L
Sbjct: 111 CNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDL 170

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
              +      KP+   F +L+ GLC  G +  A+ + + M+ D ++ +   Y +++  + 
Sbjct: 171 FHQM-----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMC 225

Query: 270 K-----------------------------------------AGRKNEFPAILKEMKER- 287
           K                                         +GR +E   +L+EM ER 
Sbjct: 226 KMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERK 285

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              P+ VTYNALI+ F KE  F  A  + DEM  +G   + I+Y+ ++ G CK  +
Sbjct: 286 KISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNR 341



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 126/270 (46%), Gaps = 13/270 (4%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  I F  +I  Y RA+ ++  +++  EM+   +      + TL++     G L+  ++L
Sbjct: 359 PDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDL 418

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL-----------QPTLV 188
            Q M    V P+  + N L+ G   + +L+DA ++F  M K ++           +P + 
Sbjct: 419 LQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQ 478

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           T+  LI GL  E +  EA +L E+ M    + PD   + S+I GLC    L  A  + + 
Sbjct: 479 TYNILISGLINEGKFLEAEELYEE-MPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDS 537

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M       +   +++LI+   KAGR ++   +  EM  RG   N++TY  LI GF K  +
Sbjct: 538 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGN 597

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGL 338
              A  I  EM   G   + I+   +L GL
Sbjct: 598 INGALDIFQEMMASGVYPDTITIRNMLTGL 627



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 139/309 (44%), Gaps = 20/309 (6%)

Query: 54  ITKLGRAKMFDEMQQILHQLKHDTRIV-----------PKEIIFCNVIGFYGRARLLERA 102
           ITKLG          +LH L  + RI            P  + F  ++    R   +  A
Sbjct: 139 ITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEA 198

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYNI--- 157
           + + D M    +Q     + T+++     G       L + ME+  ++ P+   + +   
Sbjct: 199 VALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERR 258

Query: 158 --LIHGCVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
             +I+G   S R  +A ++  EM++R+ + P +VT+  LI     E +  EA +L ++++
Sbjct: 259 TCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEML 318

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
               + P    ++S+I G C    L  A  +   M       D   +++LI+   +A R 
Sbjct: 319 P-RGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRV 377

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           ++   +L EM E G   N++TY  LI GFC+  D  AA  +L EM   G   N ++ N +
Sbjct: 378 DDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTL 437

Query: 335 LGGLCKDGK 343
           L GLC +GK
Sbjct: 438 LDGLCDNGK 446


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 154/320 (48%), Gaps = 19/320 (5%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  +   Y  +IT L  A   ++   +  ++K    + P    +  +I  + +A L+E
Sbjct: 217 KGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKM-VGVTPDVYTYTILIDSFCKAGLIE 275

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
           +A  +F+EM S     TV  +  L++  L   ++ +  ++F  M +    P+  +Y  L+
Sbjct: 276 QAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALV 335

Query: 160 HGCVVSRRLEDAWKVFDEMV----------------KRRLQPTLVTFGTLIYGLCLELRV 203
            G   +  +  A++V+ +++                +  L P +VT+G L+ GLC   +V
Sbjct: 336 DGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKV 395

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
           D A +L  D M     +P+  V+ +LI G C  G++  A  V  +M +         Y+S
Sbjct: 396 DHAHELL-DAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTS 454

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LI  +FK GR +    +L +M +  C PN VTY A+I G C+  + E A  +L  M +KG
Sbjct: 455 LIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG 514

Query: 324 CKANPISYNVILGGLCKDGK 343
           C  N ++Y  ++ GL K GK
Sbjct: 515 CSPNVVTYTALIDGLGKAGK 534



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 133/299 (44%), Gaps = 13/299 (4%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           +I+ L  A  FDE    LH+++ ++  +P  + +  ++  + + + L    ++ + M + 
Sbjct: 48  MISGLMEASYFDEAMSFLHRMRCNS-CIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTE 106

Query: 113 NVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
                   FN+L++    C + D     K L ++      P    YNI I       +L 
Sbjct: 107 GCNPNPSLFNSLVHS--YCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLP 164

Query: 170 D------AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
                  A K++ EM+        V        LC   + D+A +L +++MR   V PD 
Sbjct: 165 SPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFV-PDT 223

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             ++ +I  LC   ++  A  + +EM    +  D   Y+ LI +  KAG   +   + +E
Sbjct: 224 STYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEE 283

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           M+  GC P  VTY ALI  + K +    A  I   M D GC+ N ++Y  ++ GLCK G
Sbjct: 284 MRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAG 342



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 133/291 (45%), Gaps = 19/291 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            ++ Y  +I    +AK   +   I H++  D    P ++ +  ++    +A  + +A ++
Sbjct: 292 TVVTYTALIHAYLKAKQVPQANDIFHRMV-DAGCRPNDVTYGALVDGLCKAGNISKAFEV 350

Query: 106 FDEMSSFNVQMTVKFF------NTLLNPKLTCG----------KLDRMKELFQIM-EKYV 148
           + ++   +      F+      +TL    +T G          K+D   EL   M     
Sbjct: 351 YAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGC 410

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
            P+   Y+ LI G   + +++ A +VF +M K    P++ T+ +LI  +  + R+D A+K
Sbjct: 411 EPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMK 470

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           +   +++  +  P+   + ++I GLC +GE   AL +   M       +   Y++LI  L
Sbjct: 471 VLSQMLKD-SCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGL 529

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            KAG+ +    +  +M  +GC PN VTY  LI+  C     + A  +L EM
Sbjct: 530 GKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEM 580



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 126/286 (44%), Gaps = 17/286 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + YD +I    +A   D  Q++  Q+      +P    + ++I    +   L+ A+++
Sbjct: 413 NHIVYDALIDGFCKAGKIDSAQEVFLQMT-KCGYLPSVHTYTSLIDRMFKDGRLDLAMKV 471

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
             +M   +    V  +  +++     G+ ++  +L  +ME K  SP+  +Y  LI G   
Sbjct: 472 LSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGK 531

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + +++ +  +F +M ++   P  VT+  LI  LC    +D+A  L  ++ + Y       
Sbjct: 532 AGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTY------- 584

Query: 225 VFASLIKGL-CAVGELS----LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            +   ++G  CA+   S     +LG+ EEM        A +Y  LI    KAGR      
Sbjct: 585 -WPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAME 643

Query: 280 ILKEMKE--RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           + KEM E     K ++  Y +LI   C     E AF +  EM  +G
Sbjct: 644 LHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRG 689



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 4/155 (2%)

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           T G   + LC E R  +AL    D++   + K D  +   +I GL        A+     
Sbjct: 12  TVGCFAHALCKEGRWADAL----DMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHR 67

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M  +    +   Y +L+S   K  +      I+  M   GC PN   +N+L+  +C E+D
Sbjct: 68  MRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKD 127

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  A+ +L+ M   GC    + YN+ +G +C   K
Sbjct: 128 YAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEK 162



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y ++I  L  A + D+ + +L ++K        +   C + GF   ++    +L +
Sbjct: 553 NYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGF---SKSFIASLGI 609

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIME--KYVSPDACSYNILIHGC 162
            +EM S+        +  L++     G+L+   EL  ++ME    V  D   Y  LI   
Sbjct: 610 LEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQAL 669

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
            ++ ++E+A++++ EM +R   P L  F  LI GL    + DEAL+L
Sbjct: 670 CLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQL 716


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 147/289 (50%), Gaps = 3/289 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ II    +  M  E  ++L         VP  + +C++I        +ERAL++F+E 
Sbjct: 222 YNTIIDGYCKRDMLQEATELLKDAIFKG-FVPDRVTYCSLINGLCAEGDVERALELFNEA 280

Query: 110 SSFNVQMTVKFFNTLLNPKLTCG-KLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168
            + +++  +  +N+L+      G  L  ++ + +++E    PD  +YNI+I+G      +
Sbjct: 281 QAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNI 340

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            DA  V ++ + +   P + TF T+I G C  L++D AL+L E  M +Y + PD   + S
Sbjct: 341 SDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVER-MWMYGIAPDAITYNS 399

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           ++ GLC  G+        EEM+      +A  Y+ LI    K  +  E   ++  M + G
Sbjct: 400 VLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDG 459

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             P+++++N LI GFC+  D + A+ +  ++ +KG  A   ++N+++G 
Sbjct: 460 LVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGA 508



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 147/299 (49%), Gaps = 5/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ ++  L +     E  Q L ++ +    +P +  +  +I  Y +  +L+ A ++
Sbjct: 183 DVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQG-CIPDDFTYNTIIDGYCKRDMLQEATEL 241

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             +            + +L+N     G ++R  ELF +   K + PD   YN L+ G   
Sbjct: 242 LKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCR 301

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV-DEALKLKEDIMRVYNVKPDG 223
              +  A +V +EMV+    P + T+  +I GLC    + D A+ + + I++ Y   PD 
Sbjct: 302 QGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGY--LPDV 359

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             F ++I G C   +L  AL + E M    I  DA  Y+S+++ L KAG+  E     +E
Sbjct: 360 FTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEE 419

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           M  +GC+PN++TYN LI  FCK    E A  ++  M   G   + IS+N ++ G C++G
Sbjct: 420 MILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNG 478



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 131/246 (53%), Gaps = 3/246 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNI 157
           LE A+ + + M ++ +   V  +NTL+       K+    + L ++M +   PD  +YN 
Sbjct: 166 LEEAVALVESMDAY-IAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNT 224

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I G      L++A ++  + + +   P  VT+ +LI GLC E  V+ AL+L  +  +  
Sbjct: 225 IIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNE-AQAK 283

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           ++KPD  V+ SL+KGLC  G +  AL V  EMV D    D   Y+ +I+ L K G  ++ 
Sbjct: 284 DLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDA 343

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++ +   +G  P+  T+N +I G+CK    ++A  +++ M   G   + I+YN +L G
Sbjct: 344 AVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNG 403

Query: 338 LCKDGK 343
           LCK GK
Sbjct: 404 LCKAGK 409



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 113/233 (48%), Gaps = 3/233 (1%)

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRR 167
           M  F        +N +++  +     D+  +++ +++   V+PDA ++ + I    ++ R
Sbjct: 1   MDLFGCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGR 60

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
              A ++   + +R      + + T++ GL       +A  L ++++R  +V PD   F 
Sbjct: 61  PHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLR-RDVFPDVATFN 119

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +++  LC  G++  +  +  ++++  + ++    +  I  L + GR  E  A+++ M + 
Sbjct: 120 NVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESM-DA 178

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
              P+ VTYN L+ G CK+   + A   L  M ++GC  +  +YN I+ G CK
Sbjct: 179 YIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCK 231



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 124/299 (41%), Gaps = 41/299 (13%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           +P    F  +I  Y +   L+ ALQ+ + M  + +      +N++LN     GK   + E
Sbjct: 356 LPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNE 415

Query: 140 LFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            F+ ++ K   P+A +YNILI       +LE+A  V   M +  L P  ++F TLI+G C
Sbjct: 416 TFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFC 475

Query: 199 LELRVDEA-------------------------------LKLKEDI---MRVYNVKPDGQ 224
               +D A                               +++ E I   M     KPD  
Sbjct: 476 RNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLY 535

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  L+ G C    +  A     EMV          +  ++++L    R +E  AI+  M
Sbjct: 536 TYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIM 595

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  P  V  + ++S    +++  A   +++E+  KG  + P +Y V+  G+ +D K
Sbjct: 596 VRMGVVPEVV--DTILS--TDKKEIAAPKILVEELMKKGHISYP-TYEVLHEGV-RDNK 648



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 86/178 (48%), Gaps = 2/178 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LK  R N + Y+++I    +    +E   ++ ++  D  +VP  I F  +I  + R   L
Sbjct: 422 LKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDG-LVPDTISFNTLIHGFCRNGDL 480

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNIL 158
           + A  +F ++       T   FN L+    +   +   +++F +++ K   PD  +Y +L
Sbjct: 481 DGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVL 540

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           + G   +  ++ A+    EMV +   P++ TFG ++  L +  RV EA+ +   ++R+
Sbjct: 541 VDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRM 598



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 56/126 (44%)

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            V PD +     IK  C  G   +AL +   +     ++    Y +++  L+  G   + 
Sbjct: 40  GVAPDARTHTVRIKSFCITGRPHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDA 99

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +  EM  R   P+  T+N ++   C++ D   +  +L ++  +G   N  + N+ + G
Sbjct: 100 RHLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRG 159

Query: 338 LCKDGK 343
           LC+ G+
Sbjct: 160 LCEGGR 165



 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           A  Y++++ AL      ++   +   M   G  P++ T+   I  FC       A  +L 
Sbjct: 10  APAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVALRLLR 69

Query: 318 EMGDKGCKANPISYNVILGGLCKDG 342
            + ++GC   P++Y  ++ GL   G
Sbjct: 70  SLPERGCDVKPLAYCTVVRGLYAHG 94


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 148/306 (48%), Gaps = 4/306 (1%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           PLK  R N + Y  +I  L  A+  DE   +  ++K D    P    +  +I     +  
Sbjct: 280 PLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDD-ECFPTVRTYTVLIKSLCGSER 338

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
              AL +  EM    ++  +  +  L++   +  K ++ +EL  Q++EK + P+  +YN 
Sbjct: 339 KSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNA 398

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G      +EDA  V + M  R+L P   T+  LI G C +  V +A+ +   ++   
Sbjct: 399 LINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYC-KSNVHKAMGVLNKMLE-R 456

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            V PD   + SLI G C  G    A  +   M    +  D   Y+S+I +L K+ R  E 
Sbjct: 457 KVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEA 516

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +   ++++G  PN V Y ALI G+CK    + A  +L++M  K C  N +++N ++ G
Sbjct: 517 CDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHG 576

Query: 338 LCKDGK 343
           LC DGK
Sbjct: 577 LCADGK 582



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 124/237 (52%), Gaps = 2/237 (0%)

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVS 165
           DE      ++ +  +NTLLN     G +D MK+++ +++E  V P+  +YN +++G    
Sbjct: 172 DERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKL 231

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             +E+A +   ++V+  L P   T+ +LI G C    +D A K+  + M +   + +   
Sbjct: 232 GNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNE-MPLKGCRRNEVA 290

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           +  LI GLC    +  A+ +  +M  D+       Y+ LI +L  + RK+E   ++KEM+
Sbjct: 291 YTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEME 350

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           E G KPN  TY  LI   C +  FE A  +L +M +KG   N I+YN ++ G CK G
Sbjct: 351 ETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 147/293 (50%), Gaps = 4/293 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ +I    +  M ++   ++ +L    ++ P    +  +I  Y ++ +  +A+ +
Sbjct: 392 NVITYNALINGYCKRGMIEDAVDVV-ELMESRKLSPNTRTYNELIKGYCKSNV-HKAMGV 449

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            ++M    V   V  +N+L++ +   G  D    L  +M ++ + PD  +Y  +I     
Sbjct: 450 LNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCK 509

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S+R+E+A  +FD + ++ + P +V +  LI G C   +VDEA  + E ++   N  P+  
Sbjct: 510 SKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLS-KNCLPNSL 568

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI GLCA G+L  A  ++E+MV+  ++      + LI  L K G  +   +  ++M
Sbjct: 569 TFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQM 628

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
              G KP++ TY   I  +C+E     A  ++ +M + G   +  +Y+ ++ G
Sbjct: 629 LSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKG 681



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 149/316 (47%), Gaps = 21/316 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I    R+  FD   ++L  L +D  +VP +  + ++I    +++ +E A  +
Sbjct: 461 DVVTYNSLIDGQCRSGNFDSAYRLL-SLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDL 519

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           FD +    V   V  +  L++     GK+D    + + ++ K   P++ ++N LIHG   
Sbjct: 520 FDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCA 579

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L++A  + ++MVK  LQPT+ T   LI+ L  +   D A    + ++     KPD  
Sbjct: 580 DGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSS-GTKPDAH 638

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + + I+  C  G L  A  +  +M  + +  D   YSSLI      G+ N    +LK M
Sbjct: 639 TYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRM 698

Query: 285 KERGCKPNSVTYNALISGFCKEE------------------DFEAAFTILDEMGDKGCKA 326
           ++ GC+P+  T+ +LI    + +                  +F+    +L++M +     
Sbjct: 699 RDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTP 758

Query: 327 NPISYNVILGGLCKDG 342
           N  SY  ++ G+C+ G
Sbjct: 759 NAKSYEKLILGICEVG 774



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 149/310 (48%), Gaps = 5/310 (1%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           + E   +KP   N+  Y ++I  L     F++ +++L Q+  +  ++P  I +  +I  Y
Sbjct: 348 EMEETGIKP---NIHTYTVLIDSLCSQCKFEKARELLGQML-EKGLMPNVITYNALINGY 403

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC 153
            +  ++E A+ + + M S  +    + +N L+           M  L +++E+ V PD  
Sbjct: 404 CKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVV 463

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN LI G   S   + A+++   M  R L P   T+ ++I  LC   RV+EA  L  D 
Sbjct: 464 TYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLF-DS 522

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           +    V P+  ++ +LI G C  G++  A  + E+M+      ++  +++LI  L   G+
Sbjct: 523 LEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGK 582

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   + ++M + G +P   T   LI    K+ DF+ A++   +M   G K +  +Y  
Sbjct: 583 LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTT 642

Query: 334 ILGGLCKDGK 343
            +   C++G+
Sbjct: 643 FIQTYCREGR 652



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 151/364 (41%), Gaps = 72/364 (19%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHD-----------------------------TRIV 80
           Y+ ++  L R  + DEM+Q+  ++  D                             ++IV
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245

Query: 81  -----PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
                P    + ++I  Y + + L+ A ++F+EM     +     +  L++      ++D
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305

Query: 136 RMKELF------------------------------------QIMEKYVSPDACSYNILI 159
              +LF                                    ++ E  + P+  +Y +LI
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLI 365

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
                  + E A ++  +M+++ L P ++T+  LI G C    +++A+ + E +M    +
Sbjct: 366 DSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVE-LMESRKL 424

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+ + +  LIKG C    +  A+GV  +M+  K+  D   Y+SLI    ++G  +    
Sbjct: 425 SPNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYR 483

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +L  M +RG  P+  TY ++I   CK +  E A  + D +  KG   N + Y  ++ G C
Sbjct: 484 LLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYC 543

Query: 340 KDGK 343
           K GK
Sbjct: 544 KAGK 547



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 10/147 (6%)

Query: 194 IYGLCLELRVDEALKLKED-IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           +  LC ++  DE  +LK   I+  YN         +L+  L   G +     V  EM+ D
Sbjct: 162 VLDLCRKMNKDERFELKYKLIIGCYN---------TLLNSLARFGLVDEMKQVYMEMLED 212

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
           K+  +   Y+ +++   K G   E    + ++ E G  P+  TY +LI G+C+ +D ++A
Sbjct: 213 KVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSA 272

Query: 313 FTILDEMGDKGCKANPISYNVILGGLC 339
           F + +EM  KGC+ N ++Y  ++ GLC
Sbjct: 273 FKVFNEMPLKGCRRNEVAYTHLIHGLC 299



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 3/172 (1%)

Query: 133 KLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR-LQPTLVTF 190
           + D + EL + M E  V+P+A SY  LI G      L  A KVFD M +   + P+ + F
Sbjct: 740 EFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVF 799

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
             L+   C   + +EA K+ +D++ V ++ P  +    LI GL   GE      V + ++
Sbjct: 800 NALLSCCCKLKKHNEAAKVVDDMICVGHL-PQLESCKVLICGLYKKGEKERGTSVFQNLL 858

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
           +     D   +  +I  + K G    F  +   M++ GCK +S TY+ LI G
Sbjct: 859 QCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 120/294 (40%), Gaps = 56/294 (19%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNI 157
            + A   F +M S   +     + T +      G+L D    + ++ E  VSPD  +Y+ 
Sbjct: 618 FDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSS 677

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI-------YG--------LCLE-- 200
           LI G     +   A+ V   M     +P+  TF +LI       YG        LC    
Sbjct: 678 LIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSN 737

Query: 201 -LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK-IEMDA 258
            +  D  ++L E ++  ++V P+ + +  LI G+C VG L +A  V + M R++ I    
Sbjct: 738 MMEFDTVVELLEKMVE-HSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSE 796

Query: 259 GIYSSLIS-----------------------------------ALFKAGRKNEFPAILKE 283
            ++++L+S                                    L+K G K    ++ + 
Sbjct: 797 LVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQN 856

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           + + G   + + +  +I G  K+   EA + + + M   GCK +  +Y++++ G
Sbjct: 857 LLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910


>gi|449442128|ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Cucumis sativus]
          Length = 591

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 154/302 (50%), Gaps = 8/302 (2%)

Query: 42  PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLER 101
           P+R++   Y+ ++  LG+AK F  M +++ ++ H    V  E +   VI    RA   + 
Sbjct: 202 PYRHSPESYNSMVDILGKAKNFRLMWELVDEMNHLAGSVSLETM-SKVIRRLARAGRHQE 260

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161
           A+  F  +  + +       N L++  +    ++    +F+ ++  +  +  S+N+LIHG
Sbjct: 261 AIHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHG 320

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE---LRVDEALKLKEDIMRVYN 218
              +++L++AWK+  E+ K  L+P ++++   I   C E     VD+ L      M    
Sbjct: 321 YCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQ----MEHKG 376

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
            KP+   F  ++  L    +++ AL V E+M ++    D+  YSSLI  L KAGR  +  
Sbjct: 377 CKPNVITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVK 436

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            I+++M+++G  P+ +TYN LIS  C     E A T+L +M +  CK +  +Y+ +L   
Sbjct: 437 EIVEDMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMF 496

Query: 339 CK 340
           C+
Sbjct: 497 CR 498



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 121/259 (46%), Gaps = 9/259 (3%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +NL  ++++I    +AK  DE  +I+ +++  + + P  I +   I  + R +      +
Sbjct: 309 FNLASFNVLIHGYCKAKKLDEAWKIMGEVE-KSGLEPDVISYTAFIEAHCREKDFRNVDK 367

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIH 160
           +  +M     +  V  F  +++     GK  ++ E  ++ EK       PD+  Y+ LI 
Sbjct: 368 VLVQMEHKGCKPNVITFTIIMH---ALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIF 424

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
               + RL D  ++ ++M K+ + P ++T+ TLI   C   + + AL L   +  V + K
Sbjct: 425 ILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEV-SCK 483

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD + +  L+K  C    + +   + + M ++ + ++AG Y+ L+  L + G+ +   + 
Sbjct: 484 PDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSIEAGTYAILVRGLCENGKLHLACSF 543

Query: 281 LKEMKERGCKPNSVTYNAL 299
             EM  +   P   T+  L
Sbjct: 544 FGEMLSKAMVPKDSTFKML 562


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 153/296 (51%), Gaps = 8/296 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+L Y  ++ K GR   F+ + +I  ++  +  + P  I F  +I    R   L RA +M
Sbjct: 151 NVLLY--VLVKTGR---FELLWRIYEEMISNG-LSPSVITFGTLIDGCCRQGDLLRAQEM 204

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           FDEM    +  TV  +  L+    +  K++  + + + M E  V P+  +YN L+ G   
Sbjct: 205 FDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCK 264

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
               + A +++ +M+   L P +VTFG LI GLC    +  A  L  ++++ ++V P+  
Sbjct: 265 LANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIK-FSVTPNIA 323

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           V+ SLI   C VG++S A+ +  E+ R ++  D   YS LI  L    R  E   I ++M
Sbjct: 324 VYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKM 383

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            + G   NSVTYN+LI G CKE   + A  I  +M + G + N I+++ ++ G CK
Sbjct: 384 TKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCK 439



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 153/314 (48%), Gaps = 14/314 (4%)

Query: 35  TEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY- 93
           +E   LK  ++    Y  +I  L + ++ +E   + H++     I       CNV+ +  
Sbjct: 103 SELSRLKSSKFTPNVYGELIIVLCKMELVEEALSMYHKVGAALTIQA-----CNVLLYVL 157

Query: 94  ---GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVS 149
              GR  LL R   +++EM S  +  +V  F TL++     G L R +E+F  M  K + 
Sbjct: 158 VKTGRFELLWR---IYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIV 214

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P    Y ILI G     ++E+A  +   M +  + P + T+ TL+ G C      +AL+L
Sbjct: 215 PTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRL 274

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            +D++    + PD   F  LI GLC  GE+  A  +   M++  +  +  +Y+SLI A  
Sbjct: 275 YQDMLG-EGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYC 333

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           K G  +E  A+  E++     P+  TY+ LI G C     E A  I ++M  +G  AN +
Sbjct: 334 KVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSV 393

Query: 330 SYNVILGGLCKDGK 343
           +YN ++ G CK+GK
Sbjct: 394 TYNSLIDGCCKEGK 407



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 145/301 (48%), Gaps = 16/301 (5%)

Query: 58  GRAKMFDEMQQI-LHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQM 116
           G  K+ +  Q + L+Q      +VP  + F  +I    +   ++ A  +F  M  F+V  
Sbjct: 261 GYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTP 320

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
            +  +N+L++     G +     LF  +E++ VSPD  +Y+ILI G     R E+A  +F
Sbjct: 321 NIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIF 380

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           ++M K  +    VT+ +LI G C E ++D+AL++    M    V+P+   F++LI G C 
Sbjct: 381 EKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQ-MTENGVEPNVITFSTLIDGYCK 439

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
           +  L  A+G+  EMV   +  D   Y+++I    K G   E   +  +M + G  PN  T
Sbjct: 440 IRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYT 499

Query: 296 YNALISGFCKEEDFEAAFTI-------------LDEMGDKGCKANPISYNVILGGLCKDG 342
            + L+ G CK+     A  +             +D  G K    N ++Y  ++ GLC+DG
Sbjct: 500 ISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDG 559

Query: 343 K 343
           +
Sbjct: 560 Q 560



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 138/284 (48%), Gaps = 10/284 (3%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           +MFDEM+           IVP  I++  +I        +E A  M   M    V   V  
Sbjct: 203 EMFDEMRV--------KGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYT 254

Query: 121 FNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +NTL++         +   L+Q ++ + + PD  ++ ILI G      ++ A  +F  M+
Sbjct: 255 YNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMI 314

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           K  + P +  + +LI   C    V EA+ L  ++ R + V PD   ++ LI+GLC+V   
Sbjct: 315 KFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELER-FEVSPDVFTYSILIRGLCSVSRT 373

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A  + E+M ++ I  ++  Y+SLI    K G+ ++   I  +M E G +PN +T++ L
Sbjct: 374 EEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTL 433

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I G+CK  + +AA  I  EM  K    + ++Y  ++ G CK G 
Sbjct: 434 IDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGS 477



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 128/279 (45%), Gaps = 21/279 (7%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y ++I  L      +E   I  ++  +  I+   + + ++I    +   +++AL++
Sbjct: 356 DVFTYSILIRGLCSVSRTEEAGNIFEKMTKEG-ILANSVTYNSLIDGCCKEGKMDKALEI 414

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             +M+   V+  V  F+TL++       L     ++ +++ K +SPD  +Y  +I G   
Sbjct: 415 CSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCK 474

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY----NVK 220
              +++A K++ +M+   + P   T   L+ GLC + ++ +AL+L  + +       NV 
Sbjct: 475 YGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVD 534

Query: 221 PDGQ--------VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
             G          + +LI GLC  G+ S A+ +  +M R  ++ D  IY  ++  LF+  
Sbjct: 535 AGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQV- 593

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALI-----SGFCKE 306
            K     +  +M + G  PNS  +  L      SGF K 
Sbjct: 594 -KYILMMLHADMLKFGVIPNSAVHVILCECYQESGFLKS 631


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 141/269 (52%), Gaps = 3/269 (1%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           +R +P  + FC ++G   R    +  + ++ +M    ++  +  FN L+    +C KL  
Sbjct: 73  SRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPF 132

Query: 137 MKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
               F +I +  + PD  ++  L+HG  V  R+ +A   F +M +   +P +VTF TL+ 
Sbjct: 133 ALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMN 192

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR-DKI 254
           GLC E R+ EA+ L + +M    ++P    + +++ G+C  G+   AL +  +M     I
Sbjct: 193 GLCREGRIVEAVALLDRMME-DGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHI 251

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
             +  IYS++I +L K GR ++   +  EM+E+G  P+  TYN++I GFC    +  A  
Sbjct: 252 IPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQ 311

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +L EM ++    + ++YN ++    K+GK
Sbjct: 312 LLQEMLERKISPDVVTYNALINAFVKEGK 340



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 156/310 (50%), Gaps = 14/310 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L  Y+ +I     +  + + +Q+L ++  + +I P  + +  +I  + +      A ++
Sbjct: 289 DLFTYNSMIVGFCSSGRWSDAEQLLQEML-ERKISPDVVTYNALINAFVKEGKFFEAEEL 347

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           +DEM    +      ++++++      +LD  + +F +M  K  SP+  ++N LI G   
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCG 407

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           ++R++D  ++  EM +  L     T+ TLI+G  L   ++ AL L ++++    + PD  
Sbjct: 408 AKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMIS-SGLCPDIV 466

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG-----------IYSSLISALFKAGR 273
              +L+ GLC  G+L  AL + + M + K ++DA             Y+ LIS L   G+
Sbjct: 467 TCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGK 526

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   + +EM  RG  P+++TY+++I G CK+   + A  + D MG K    N +++  
Sbjct: 527 FLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTT 586

Query: 334 ILGGLCKDGK 343
           ++ G CK G+
Sbjct: 587 LINGYCKAGR 596



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 149/309 (48%), Gaps = 12/309 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I    +   F E +++  ++     I+P  I + ++I  + +   L+ A  M
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEML-PRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVV 164
           F  M++      +  FNTL++      ++D  M+ L ++ E  +  D  +YN LIHG  +
Sbjct: 383 FYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYL 442

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-------KEDIMRVY 217
              L  A  +  EM+   L P +VT  TL+ GLC   ++ +AL++       K+D+   +
Sbjct: 443 VGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASH 502

Query: 218 ---NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
               V+PD Q +  LI GL   G+   A  + EEM    I  D   YSS+I  L K  R 
Sbjct: 503 PFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRL 562

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +E   +   M  +   PN VT+  LI+G+CK    +    +  EMG +G  AN I+Y  +
Sbjct: 563 DEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITL 622

Query: 335 LGGLCKDGK 343
           + G  K G 
Sbjct: 623 ICGFRKVGN 631



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 144/287 (50%), Gaps = 16/287 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           NL+ ++ +I     AK  D+  ++LH++  +T +V     +  +I GFY    L   AL 
Sbjct: 394 NLITFNTLIDGYCGAKRIDDGMELLHEMT-ETGLVADTTTYNTLIHGFYLVGDL-NAALD 451

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY------------VSPDA 152
           +  EM S  +   +   +TLL+     GKL    E+F++M+K             V PD 
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YNILI G +   +  +A ++++EM  R + P  +T+ ++I GLC + R+DEA ++  D
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF-D 570

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M   +  P+   F +LI G C  G +   L +  EM R  I  +A  Y +LI    K G
Sbjct: 571 SMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVG 630

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             N    I +EM   G  P+++T   +++G   +E+ + A  +L+++
Sbjct: 631 NINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 1/177 (0%)

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
           + LEDA  +F +M++ R  P++V F  L+  +    R D  + L + + R   ++ D   
Sbjct: 58  KGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMER-KQIRCDIYS 116

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F  LIK  C+  +L  AL    ++ +  +  D   +++L+  L    R +E      +M 
Sbjct: 117 FNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMF 176

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           E  C+PN VT+  L++G C+E     A  +LD M + G +   I+Y  I+ G+CK G
Sbjct: 177 ETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG 233


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 156/299 (52%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L  Y  ++  L +    D    +L +++   +I    +I+  +I    + + ++ A  +
Sbjct: 220 DLFTYGTVVNGLCKRGDIDLALSLLKKMEKG-KIEANVVIYNTIIDGLCKYKHMDDAFDL 278

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           F++M +  ++  V  +N+L++     G+  D  + L  ++E+ ++P+  ++N LI     
Sbjct: 279 FNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAK 338

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L +A K+FDEM++R + P +VT+ +LI G C+  R+DEA ++   +M   +  PD  
Sbjct: 339 EGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFT-LMVSKDCLPDVV 397

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LIKG C    +   + +  EM +  +  +   Y++LI  LF+AG  +    I K+M
Sbjct: 398 TYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM 457

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  P+ +TY+ L+ G CK    E A  + + +     + N  +YN+++ G+CK GK
Sbjct: 458 VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGK 516



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 158/311 (50%), Gaps = 6/311 (1%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           N  E   +KP   ++  Y+ +I+ L     + +  ++L  +  + +I P  + F ++I  
Sbjct: 280 NKMETKGIKP---DVFTYNSLISCLCNYGRWSDASRLLSDMI-ERKINPNVVTFNSLIDA 335

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPD 151
           + +   L  A ++FDEM   ++   +  +N+L+N      +LD  +++F +M  K   PD
Sbjct: 336 FAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPD 395

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +YN LI G   ++R+E+  ++F EM +R L    VT+ TLI GL      D A K+ +
Sbjct: 396 VVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 455

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
             M    V PD   ++ L+ GLC  G+L  AL V E + + K+E +   Y+ +I  + KA
Sbjct: 456 K-MVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKA 514

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G+  +   +   +  +G KPN + Y  +ISGFC++   E A  +  EM + G   +   Y
Sbjct: 515 GKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCY 574

Query: 332 NVILGGLCKDG 342
           N ++    +DG
Sbjct: 575 NTLIRARLRDG 585



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 152/335 (45%), Gaps = 37/335 (11%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +PF  +++ +  +++ + +   FD +  +  Q++ +  I      +  ++  + R   L 
Sbjct: 76  RPFP-SIIEFSKLLSAIAKMNKFDVVISLGEQMQ-NLGIPHNHYTYSILLNCFCRRSQLP 133

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
            AL +  +M     +  +   ++LLN      ++     L  Q++E    PD  ++N LI
Sbjct: 134 LALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLI 193

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR---- 215
           HG  +  +  +A  + D MV R  QP L T+GT++ GLC    +D AL L + + +    
Sbjct: 194 HGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE 253

Query: 216 ----VYN--------------------------VKPDGQVFASLIKGLCAVGELSLALGV 245
               +YN                          +KPD   + SLI  LC  G  S A  +
Sbjct: 254 ANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRL 313

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
             +M+  KI  +   ++SLI A  K G+  E   +  EM +R   PN VTYN+LI+GFC 
Sbjct: 314 LSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCM 373

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            +  + A  I   M  K C  + ++YN ++ G CK
Sbjct: 374 HDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCK 408



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 132/266 (49%), Gaps = 4/266 (1%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F  +I G +   +  E A+ + D M +   Q  +  + T++N     G +D    
Sbjct: 184 PDTVTFNTLIHGLFLHNKASE-AVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALS 242

Query: 140 LFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L + MEK  +  +   YN +I G    + ++DA+ +F++M  + ++P + T+ +LI  LC
Sbjct: 243 LLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLC 302

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              R  +A +L  D++    + P+   F SLI      G+L  A  + +EM++  I+ + 
Sbjct: 303 NYGRWSDASRLLSDMIE-RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNI 361

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y+SLI+      R +E   I   M  + C P+ VTYN LI GFCK +  E    +  E
Sbjct: 362 VTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFRE 421

Query: 319 MGDKGCKANPISYNVILGGLCKDGKC 344
           M  +G   N ++YN ++ GL + G C
Sbjct: 422 MSQRGLVGNTVTYNTLIQGLFQAGDC 447



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 126/246 (51%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNI 157
           L+ A+ +F EM       ++  F+ LL+      K D +  L + M+    P +  +Y+I
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L++      +L  A  V  +M+K   +P +VT  +L+ G C   R+ EA+ L + ++ + 
Sbjct: 122 LLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEM- 180

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             KPD   F +LI GL    + S A+ + + MV    + D   Y ++++ L K G  +  
Sbjct: 181 GYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 240

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            ++LK+M++   + N V YN +I G CK +  + AF + ++M  KG K +  +YN ++  
Sbjct: 241 LSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISC 300

Query: 338 LCKDGK 343
           LC  G+
Sbjct: 301 LCNYGR 306



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 34/208 (16%)

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV--------YN 218
           +L+DA  +F EMVK R  P+++ F  L+  +    + D  + L E +  +        Y+
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 219 V--------------------------KPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           +                          +PD    +SL+ G C    +S A+ + ++MV  
Sbjct: 121 ILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEM 180

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
             + D   +++LI  LF   + +E  A++  M  RGC+P+  TY  +++G CK  D + A
Sbjct: 181 GYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 240

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCK 340
            ++L +M     +AN + YN I+ GLCK
Sbjct: 241 LSLLKKMEKGKIEANVVIYNTIIDGLCK 268


>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Brachypodium distachyon]
          Length = 571

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 147/270 (54%), Gaps = 5/270 (1%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           R+ P    F  VI    +   L +A  +  ++ ++ +  +V  +NT+++     G+  RM
Sbjct: 180 RVSPDLFTFNIVISGLCKTGQLRKAGDVAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRM 239

Query: 138 KE----LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
                 L +++E  +SP+  ++N+L++G         A +VF+EM ++ +  ++VT+  L
Sbjct: 240 YHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSAL 299

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           ++GLC E +V+E +KL ++ M+   + P+     S++ G C  G ++ A G  + M +  
Sbjct: 300 VWGLCSEGKVEEGVKLVDE-MKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKN 358

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           ++ +   Y+ L+    +  +  +  A+ + M  +G +PN+  YN LI+GF +  D+ +  
Sbjct: 359 VKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVS 418

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +LDEM  KG +A+ ++YNV++G LC  G+
Sbjct: 419 GLLDEMRMKGVRADIVTYNVLIGALCVKGE 448



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 156/314 (49%), Gaps = 9/314 (2%)

Query: 34  DTEAHPLKPFRYNLLHYDLIIT---KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI 90
           D  A  L P   +++ Y+ II    K GRA     +  +L ++  +  I P E+ F  ++
Sbjct: 210 DIRAWGLAP---SVVTYNTIIDGYCKRGRAGRMYHVDALLKEMV-EAGISPNEVTFNVLV 265

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VS 149
             Y +      A+++F+EM    +  +V  ++ L+    + GK++   +L   M+   + 
Sbjct: 266 NGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLV 325

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P+  + N +++G      + DA    D M ++ ++P +VT+  L+ G     ++ +AL +
Sbjct: 326 PNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAV 385

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
           KE  M    V+P+ +++  LI G    G+     G+ +EM    +  D   Y+ LI AL 
Sbjct: 386 KE-AMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALC 444

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
             G   +   +L EM   G +P  +TYN +I+G+C++ + ++A+ I   M     +AN +
Sbjct: 445 VKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKRANVV 504

Query: 330 SYNVILGGLCKDGK 343
           +YNV +  LC+ GK
Sbjct: 505 TYNVFIKCLCRMGK 518



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 96/194 (49%), Gaps = 33/194 (17%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P A S N L+   V + R++ A + F   ++RR+ P L TF  +I GLC   ++ +A  +
Sbjct: 148 PSAFSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGDV 207

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            +DI R + + P    + ++I G C  G                                
Sbjct: 208 AKDI-RAWGLAPSVVTYNTIIDGYCKRG-------------------------------- 234

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           +AGR     A+LKEM E G  PN VT+N L++G+CK+ +  AA  + +EM  +G  A+ +
Sbjct: 235 RAGRMYHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVV 294

Query: 330 SYNVILGGLCKDGK 343
           +Y+ ++ GLC +GK
Sbjct: 295 TYSALVWGLCSEGK 308



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 108/221 (48%), Gaps = 7/221 (3%)

Query: 122 NTLLNPKLTCGKLDRMKELFQI-MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           N LL+  +   ++D  +  F+  + + VSPD  ++NI+I G   + +L  A  V  ++  
Sbjct: 154 NRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGDVAKDIRA 213

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALK----LKEDIMRVYNVKPDGQVFASLIKGLCAV 236
             L P++VT+ T+I G C   R          LKE  M    + P+   F  L+ G C  
Sbjct: 214 WGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKE--MVEAGISPNEVTFNVLVNGYCKD 271

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
              + A+ V EEM +  I      YS+L+  L   G+  E   ++ EMK+ G  PN  T 
Sbjct: 272 SNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATL 331

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           N++++GFCK+     A   +D M  K  K N ++Y +++ G
Sbjct: 332 NSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDG 372


>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
 gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
          Length = 660

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 159/302 (52%), Gaps = 15/302 (4%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS 110
           + ++T LG+A+ F +M  ++ ++K D  I P  I F  +I    + R ++ AL++F++M 
Sbjct: 156 NALLTGLGKAREFGKMNLLMRKMK-DMNIQPTVITFGILINHLCKFRRIDDALEVFEKMK 214

Query: 111 SFNVQMTV------KFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIH 160
               +  V        +NTL++    C K+ R +E   +M K  S    P   ++N LI+
Sbjct: 215 GEKEETKVFVAPDTIMYNTLIDG--LC-KVGRQEEALCLMGKMRSDQCAPTTATFNCLIN 271

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G   S  +E A K+F+EM   +++P ++T  TL+ G+C   R+  A++    +M+   +K
Sbjct: 272 GYCRSGEIEVAHKLFNEMENAQIEPNVITLNTLVDGMCKHNRISTAVEFFR-VMQQKGLK 330

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
            +   +   I   C V  ++ A+   +EM +D    DA +Y +LI  L +AGR ++  ++
Sbjct: 331 GNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSV 390

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + ++KE G   + V YN LIS FCK+   + A   L+EM   G K + ++YN ++    K
Sbjct: 391 VSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNTLISYFSK 450

Query: 341 DG 342
            G
Sbjct: 451 IG 452



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 133/294 (45%), Gaps = 12/294 (4%)

Query: 58  GRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQM 116
           GR K  DE+  ++ +  KH+  I P  I    +I    R+     A  + D +   N   
Sbjct: 94  GRVKE-DEIAGLVSKFGKHN--IFPDTIALTQLISKLCRSGNTNLAWNILDNLMMLNGLK 150

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
                N LL       +  +M  L + M+   + P   ++ ILI+     RR++DA +VF
Sbjct: 151 DAAPCNALLTGLGKAREFGKMNLLMRKMKDMNIQPTVITFGILINHLCKFRRIDDALEVF 210

Query: 176 DEM------VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           ++M       K  + P  + + TLI GLC   R +EAL L    MR     P    F  L
Sbjct: 211 EKMKGEKEETKVFVAPDTIMYNTLIDGLCKVGRQEEALCLMGK-MRSDQCAPTTATFNCL 269

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           I G C  GE+ +A  +  EM   +IE +    ++L+  + K  R +      + M+++G 
Sbjct: 270 INGYCRSGEIEVAHKLFNEMENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGL 329

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           K N+VTY   I+ FC   +   A   LDEM   GC  + + Y  ++ GL + G+
Sbjct: 330 KGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGR 383



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 11/299 (3%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQMFDEMSS 111
           +I+KL R+   +    IL  L     +  K+   CN ++   G+AR   +   +  +M  
Sbjct: 123 LISKLCRSGNTNLAWNILDNLMMLNGL--KDAAPCNALLTGLGKAREFGKMNLLMRKMKD 180

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-------YVSPDACSYNILIHGCVV 164
            N+Q TV  F  L+N      ++D   E+F+ M+        +V+PD   YN LI G   
Sbjct: 181 MNIQPTVITFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFVAPDTIMYNTLIDGLCK 240

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R E+A  +  +M   +  PT  TF  LI G C    ++ A KL  + M    ++P+  
Sbjct: 241 VGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNE-MENAQIEPNVI 299

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
              +L+ G+C    +S A+     M +  ++ +   Y+  I+A       N+    L EM
Sbjct: 300 TLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEM 359

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + GC P++V Y  LI G  +    + A +++ ++ + G   + + YNV++   CK  K
Sbjct: 360 SKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNK 418



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 128/305 (41%), Gaps = 37/305 (12%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + N + Y + I         ++  + L ++  D    P  +++  +I    +A  L+
Sbjct: 327 KGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDG-CFPDAVVYYTLICGLAQAGRLD 385

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
            A  +  ++      +    +N L++      KLDR +E    ME   V PD+ +YN LI
Sbjct: 386 DASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNTLI 445

Query: 160 HGCVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
                    + A K   +M +   L PT+ T+G LI+  CL   +DEA+K+ +++  V +
Sbjct: 446 SYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNNVAS 505

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
             P   V                                  IY+ LI +L K  + N   
Sbjct: 506 KVPPNTV----------------------------------IYNILIDSLCKQTQVNFAL 531

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           ++L +MK RG  PN+ TYN++      +   + AF ++D M ++ C  + I+  ++   L
Sbjct: 532 SLLDDMKFRGVMPNTTTYNSIFKALRDKNWLDKAFKLMDRMVEQACNPDYITMEILTEWL 591

Query: 339 CKDGK 343
              G+
Sbjct: 592 SAVGE 596


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 157/311 (50%), Gaps = 6/311 (1%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           ++ +A+ LKP   N++ Y   I    +  M  E  +    ++    + P E  + ++I  
Sbjct: 349 HEMKANGLKP---NVVTYSTFIDAFCKEGMLQEAIKFFVDMRR-VALTPNEFTYTSLIDA 404

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPD 151
             +A  L  AL++ +E+    +++ V  +  LL+     G++   +E+F+ M    V+P+
Sbjct: 405 NCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPN 464

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +Y  L+HG + ++ +E A  +  EM ++ ++P L+ +GT+++GLC E R++EA  L  
Sbjct: 465 QETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIG 524

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           +I +   +  +  ++ +L+      G+ + AL + EEM+   +      Y +LI  L K+
Sbjct: 525 EI-KESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKS 583

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G   E       M E G +PN   Y AL+ G CK   FE A  + DEM DKG   + I+Y
Sbjct: 584 GLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAY 643

Query: 332 NVILGGLCKDG 342
             ++ G  K G
Sbjct: 644 TALIDGNMKHG 654



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 125/246 (50%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           LE A  +F +M        +  +N+L++     G LD    +F Q+ +    PD  +YN 
Sbjct: 271 LEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNA 330

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+      R+  A++   EM    L+P +VT+ T I   C E  + EA+K   D+ RV 
Sbjct: 331 LINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRV- 389

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + P+   + SLI   C  G L+ AL + EE+++  I+++   Y++L+  L + GR  E 
Sbjct: 390 ALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEA 449

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + + M   G  PN  TY AL+ GF K ++ E A  IL EM +K  K + + Y  IL G
Sbjct: 450 EEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWG 509

Query: 338 LCKDGK 343
           LC + +
Sbjct: 510 LCNESR 515



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 147/304 (48%), Gaps = 9/304 (2%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  +++ Y+ +I   G+  + DE   I  Q+K D    P  I +  +I  + +   + +A
Sbjct: 286 FTPDIVTYNSLIDGHGKLGLLDECICIFEQMK-DADCDPDVITYNALINCFCKFERMPKA 344

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
            +   EM +  ++  V  ++T ++     G L    + F  M +  ++P+  +Y  LI  
Sbjct: 345 FEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDA 404

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY---N 218
              +  L +A K+ +E+++  ++  +VT+  L+ GLC E R+ EA    E++ R      
Sbjct: 405 NCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEA----EEVFRAMLNAG 460

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V P+ + + +L+ G     E+  A  + +EM    I+ D  +Y +++  L    R  E  
Sbjct: 461 VAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAK 520

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            ++ E+KE G   N+V Y  L+  + K      A T+L+EM D G  A  ++Y  ++ GL
Sbjct: 521 LLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGL 580

Query: 339 CKDG 342
           CK G
Sbjct: 581 CKSG 584



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 145/302 (48%), Gaps = 9/302 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y+++I  L +    +  + +  Q+K +    P  + + ++I  +G+  LL+  + +
Sbjct: 254 SVFTYNIMIDYLCKEGDLEMARSLFTQMK-EAGFTPDIVTYNSLIDGHGKLGLLDECICI 312

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----VSPDACSYNILIHG 161
           F++M   +    V  +N L+N    C K +RM + F+ + +     + P+  +Y+  I  
Sbjct: 313 FEQMKDADCDPDVITYNALIN--CFC-KFERMPKAFEFLHEMKANGLKPNVVTYSTFIDA 369

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 L++A K F +M +  L P   T+ +LI   C    + EALKL E+I++   +K 
Sbjct: 370 FCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQA-GIKL 428

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   + +L+ GLC  G +  A  V   M+   +  +   Y++L+    KA        IL
Sbjct: 429 NVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDIL 488

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           KEMKE+  KP+ + Y  ++ G C E   E A  ++ E+ + G   N + Y  ++    K 
Sbjct: 489 KEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKS 548

Query: 342 GK 343
           G+
Sbjct: 549 GQ 550



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 150/351 (42%), Gaps = 28/351 (7%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L  L +D +LAL+ F+          A     F++    Y +++  L  A+ + +   +L
Sbjct: 105 LVELCQDARLALRFFE---------WAKGRIGFQHTSEAYCILVHILFCARFYSDANAVL 155

Query: 71  HQLKHDTRIVPKEIIF--------CNVIGF---------YGRARLLERALQMFDEMSSFN 113
            +L    R++P   +F          V GF              +LE A + F +M  F 
Sbjct: 156 KELICLRRVLPSWDVFDLLWATRNVCVPGFGVFDALFSALIELGMLEEASECFLKMRKFR 215

Query: 114 VQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAW 172
           V    +  N LL+     G+ D  ++ F+ M    +     +YNI+I        LE A 
Sbjct: 216 VFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMAR 275

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
            +F +M +    P +VT+ +LI G      +DE + + E  M+  +  PD   + +LI  
Sbjct: 276 SLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQ-MKDADCDPDVITYNALINC 334

Query: 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
            C    +  A     EM  + ++ +   YS+ I A  K G   E      +M+     PN
Sbjct: 335 FCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPN 394

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             TY +LI   CK  +   A  +++E+   G K N ++Y  +L GLC++G+
Sbjct: 395 EFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGR 445



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 125/275 (45%), Gaps = 3/275 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  ++    +AK  +  + IL ++K    I P  +++  ++        LE A  +  E+
Sbjct: 468 YTALVHGFIKAKEMEYAKDILKEMKEKC-IKPDLLLYGTILWGLCNESRLEEAKLLIGEI 526

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGK-LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168
               +      + TL++     G+  + +  L ++++  +     +Y  LI G   S  +
Sbjct: 527 KESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLV 586

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           ++A   F  M +  LQP +  +  L+ GLC     + A KL ++++    + PD   + +
Sbjct: 587 QEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLD-KGMMPDKIAYTA 645

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G    G L  AL +++ M+   +E+D   Y++LI  L  +G+  +   +L EM  +G
Sbjct: 646 LIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKG 705

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
             P+ V Y  LI  +      + A  + +EM  +G
Sbjct: 706 VLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRG 740



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 128/289 (44%), Gaps = 3/289 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           + N++ Y  ++  L       E +++   +  +  + P +  +  ++  + +A+ +E A 
Sbjct: 427 KLNVVTYTALLDGLCEEGRMKEAEEVFRAML-NAGVAPNQETYTALVHGFIKAKEMEYAK 485

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGC 162
            +  EM    ++  +  + T+L       +L+  K L  +I E  ++ +A  Y  L+   
Sbjct: 486 DILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAY 545

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             S +  +A  + +EM+   L  T VT+  LI GLC    V EA+      M    ++P+
Sbjct: 546 FKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMH-HFGRMSEIGLQPN 604

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
             V+ +L+ GLC      +A  + +EM+   +  D   Y++LI    K G   E   +  
Sbjct: 605 VAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRD 664

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
            M E G + +   Y ALI G       + A  +LDEM  KG   + + Y
Sbjct: 665 RMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVY 713


>gi|224056581|ref|XP_002298921.1| predicted protein [Populus trichocarpa]
 gi|222846179|gb|EEE83726.1| predicted protein [Populus trichocarpa]
          Length = 326

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 154/314 (49%), Gaps = 10/314 (3%)

Query: 18  PKLALQLFKNPNPNPND-----TEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ 72
           P   +++F+N   +PN       +    K ++ N   Y  +I KL +AK FD ++ I+ +
Sbjct: 10  PNEVIKIFENLK-DPNSIISVWNQYSKRKDYKPNEALYTQVINKLAQAKNFDAIEDIMQK 68

Query: 73  LKHDTRIVPKEIIFCNVIGFYGR-ARLLERALQ-MFDEMSSFNVQMTVKFFNTLLNPKLT 130
           +K D         F NVI  YG+ A  +++A++ +FD    +N    VK FN +LN  ++
Sbjct: 69  IKLDKSCRLSNDFFHNVIKIYGQLAGRIKKAMETLFDMPKGYNCWPNVKSFNLVLNLLVS 128

Query: 131 CGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
               D + E++ Q     +  D CS NILI G   +  LE A+ V DE  K+R +P + T
Sbjct: 129 AKVFDVVHEVYLQAPMLGIEIDVCSLNILIKGLCENGDLEAAFNVLDEFPKQRCEPNVRT 188

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           F TL++GLC + +VDEA  L E  M    +  D   F  LI GL   G++   L + E M
Sbjct: 189 FSTLMHGLCKKGKVDEAFGLLER-MEKEGIDADTITFNILISGLRKQGKVVEGLELLERM 247

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
                E +AG Y  ++  L  A +  E    +  M  +G  P+ V+Y  L+ G CKE   
Sbjct: 248 NIKGCEPNAGSYQEILYGLLDAEKYVEGKEFMVRMIGQGVDPSFVSYKKLVHGLCKERLL 307

Query: 310 EAAFTILDEMGDKG 323
                +L +M  +G
Sbjct: 308 RDLDWVLKQMARQG 321



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 1/150 (0%)

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           IYG  L  R+ +A++   D+ + YN  P+ + F  ++  L +     +   V  +     
Sbjct: 88  IYGQ-LAGRIKKAMETLFDMPKGYNCWPNVKSFNLVLNLLVSAKVFDVVHEVYLQAPMLG 146

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           IE+D    + LI  L + G       +L E  ++ C+PN  T++ L+ G CK+   + AF
Sbjct: 147 IEIDVCSLNILIKGLCENGDLEAAFNVLDEFPKQRCEPNVRTFSTLMHGLCKKGKVDEAF 206

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +L+ M  +G  A+ I++N+++ GL K GK
Sbjct: 207 GLLERMEKEGIDADTITFNILISGLRKQGK 236


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 175/372 (47%), Gaps = 46/372 (12%)

Query: 7   RLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEM 66
            +A + R Q DP  AL++F     N   TE      F++ L  Y  +I KLG    F+ M
Sbjct: 9   HVAAVIRYQNDPLNALKMF-----NQVKTE----DGFKHTLETYKCMIEKLGLHGKFEAM 59

Query: 67  QQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126
           + +L +++ +      E ++  ++  YGR   ++ A+ +F+ M  ++ + +V+ +N ++N
Sbjct: 60  EDVLAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMN 119

Query: 127 PKLTCGKLDRMKELFQIMEKY-VSPD------------------------------ACSY 155
             +  G   +  +++  M+   + PD                               C +
Sbjct: 120 ILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEF 179

Query: 156 NILIHGCVVSRRLE-----DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           N + +  V+S   +     +A+ +FDEM+K+ + P ++TF  LI+ LC +  V E+ KL 
Sbjct: 180 NAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLF 239

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
             +M+   V P+   F   I+GLC  G +  A  + E +V + +  D   Y++LI    K
Sbjct: 240 SKVMK-RGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCK 298

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
             +  E    L +M   G +PN  TYN +I+GFCK    + A  IL +   KG   +  +
Sbjct: 299 HSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFT 358

Query: 331 YNVILGGLCKDG 342
           Y+ ++ GLC DG
Sbjct: 359 YSSLINGLCNDG 370



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 152/335 (45%), Gaps = 40/335 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           NL  +++ I  L R    DE  ++L  +  +  + P  I +  +I GF   ++L+E A  
Sbjct: 250 NLFTFNIFIQGLCRKGAIDEAARLLESIVSEG-LTPDVISYNTLICGFCKHSKLVE-AEC 307

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCV 163
              +M +  V+     +NT++N     G +    ++ +  M K   PD  +Y+ LI+G  
Sbjct: 308 YLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLC 367

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
               +  A  VF E +++  + +++ + TL+ GL  +  V +AL+L +D+M  +   PD 
Sbjct: 368 NDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMME-HGCSPDI 426

Query: 224 QVFASLIKGLCAVGELSLALGVKEE----------------------------------- 248
             +  ++ GLC +G LS A G+  +                                   
Sbjct: 427 WTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDT 486

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M+   I  D   Y++L++ L KA + +      K M E+GC PN +TYN LI  FCK+  
Sbjct: 487 MLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRK 546

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              A  +  EM  +G   + ++   ++ GLC +G+
Sbjct: 547 VSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGE 581



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 134/304 (44%), Gaps = 12/304 (3%)

Query: 21  ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
           ALQL K       D   H   P   ++  Y+L++  L +     +   IL+        +
Sbjct: 410 ALQLMK-------DMMEHGCSP---DIWTYNLVVNGLCKMGCLSDANGILNDAIAKG-CI 458

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    F  +I  Y + R +++A+++ D M S  +   V  +NTLLN      KLD + + 
Sbjct: 459 PDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDT 518

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ M EK  +P+  +YNILI      R++ +A ++F EM  R L P +VT  TLI GLC 
Sbjct: 519 FKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCS 578

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
              +D+A +L   I + Y       +F  +I   C    +S+A  +  +M       D  
Sbjct: 579 NGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNY 638

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y  +I +  K G  +     L E   +G  P+  T   +++  C       A  I++ M
Sbjct: 639 TYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLM 698

Query: 320 GDKG 323
              G
Sbjct: 699 VQNG 702



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 142/337 (42%), Gaps = 45/337 (13%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y+ II    +A M     +IL         +P E  + ++I        + RA+ +
Sbjct: 320 NEFTYNTIINGFCKAGMMQNADKILRDAMFKG-FIPDEFTYSSLINGLCNDGDMNRAMAV 378

Query: 106 FDEMSSFNVQMTVKFFNTLLN----PKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161
           F E      + ++  +NTL+       L    L  MK++   ME   SPD  +YN++++G
Sbjct: 379 FYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDM---MEHGCSPDIWTYNLVVNG 435

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 L DA  + ++ + +   P + TF TLI G C +  +D+A+++  D M  + + P
Sbjct: 436 LCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEIL-DTMLSHGITP 494

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +L+ GLC   +L   +   + M+      +   Y+ LI +  K  + +E   + 
Sbjct: 495 DVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELF 554

Query: 282 KEMKERGCKPNSVT------------------------------------YNALISGFCK 305
           KEMK RG  P+ VT                                    +N +I+ FC+
Sbjct: 555 KEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCE 614

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + +   A  +  +MG   C  +  +Y V++   CK G
Sbjct: 615 KLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTG 651



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 111/221 (50%), Gaps = 3/221 (1%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           FNTL++       +D+  E+   M  + ++PD  +YN L++G   +R+L++    F  M+
Sbjct: 464 FNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAML 523

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           ++   P ++T+  LI   C + +V EA++L ++ M+   + PD     +LI GLC+ GEL
Sbjct: 524 EKGCTPNIITYNILIESFCKDRKVSEAMELFKE-MKTRGLTPDIVTLCTLICGLCSNGEL 582

Query: 240 SLALGVKEEMVRD-KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
             A  +   + ++ K      I++ +I+A  +    +    +  +M    C P++ TY  
Sbjct: 583 DKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRV 642

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +I  +CK  + + A T L E   KG   +  +   +L  LC
Sbjct: 643 MIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLC 683


>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
 gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
          Length = 501

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 182/383 (47%), Gaps = 53/383 (13%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRA 60
           K  +   +  L + ++D K AL +F       +   A     F+++L  + L+I+KL  A
Sbjct: 40  KTVTPTHVQQLIQAERDIKKALIIF-------DSATAEYANGFKHDLNTFSLMISKLISA 92

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
             F   + +L ++K + +I   E I  ++   YGR      ++++F +M  F+ + T K 
Sbjct: 93  NQFRLAETLLDRMKEE-KIDVTEDILLSICRAYGRIHKPLDSIRVFHKMQDFHCKPTEKS 151

Query: 121 FNTLLN------------------------PKLTC------------GKLDRMKELFQIM 144
           + ++L                         P +T             G +D+   LF+ M
Sbjct: 152 YISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIKAFCKNSGTMDKAMHLFRTM 211

Query: 145 EKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
             +   PD+ +Y  LI+G    R + +A ++  EM  +   P++VT+ ++I+GLC    V
Sbjct: 212 SNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCSPSVVTYTSIIHGLCQLNNV 271

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
           DEA++L ED M+  N++P+   ++SL+ G C  G  S A  + E M++ ++  +   YS+
Sbjct: 272 DEAMRLLED-MKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMISYST 330

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           L++ L   G+ NE   I   MK +G KP++  Y  +++  C    F+ A   LDEM   G
Sbjct: 331 LLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEMVLCG 390

Query: 324 CKANPISY-------NVILGGLC 339
            K N I++       N ++ GLC
Sbjct: 391 IKPNRITWSLHVRTHNRVIHGLC 413



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 57/123 (46%)

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           K D   F+ +I  L +  +  LA  + + M  +KI++   I  S+  A  +  +  +   
Sbjct: 76  KHDLNTFSLMISKLISANQFRLAETLLDRMKEEKIDVTEDILLSICRAYGRIHKPLDSIR 135

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +  +M++  CKP   +Y ++++   +E   ++AF    +M   G      S NV++   C
Sbjct: 136 VFHKMQDFHCKPTEKSYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIKAFC 195

Query: 340 KDG 342
           K+ 
Sbjct: 196 KNS 198


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 138/258 (53%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++  Y R   L+    +   M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 156 PSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANEL 215

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 216 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 275

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M V  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 276 KGDLKQAHHLIDE-MSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEV 334

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS   + GR  +   +L+EM   G KP++ TY  +I+ FCK  D      +L EM
Sbjct: 335 AYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLKEM 394

Query: 320 GDKGCKANPISYNVILGG 337
              G   + ++YNV++ G
Sbjct: 395 QRDGHVPSVVTYNVLMNG 412



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 130/239 (54%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   SYN L++G + 
Sbjct: 111 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 170

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++ + +   M+   +QP + T+  LI GLC E ++D+A +L ++ M V  + P+G 
Sbjct: 171 XGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDE-MLVKGLVPNGV 229

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM
Sbjct: 230 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 289

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G KP+ +TY  LI+G CKE D ++AF     M  +  + + ++Y  ++ G C++G+
Sbjct: 290 SVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGR 348



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 129/242 (53%), Gaps = 2/242 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIH 160
           A  +FD ++ + ++ +V  +NTL+N  +  G LD    L   M    V PD  +Y++LI+
Sbjct: 142 AQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLIN 201

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     +++DA ++FDEM+ + L P  VTF TLI G C   RVD A+++ + ++   ++ 
Sbjct: 202 GLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLS 260

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   + +LI GLC  G+L  A  + +EM    ++ D   Y++LI+   K G  +     
Sbjct: 261 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEH 320

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            K M +   + + V Y ALISG C+E     A  +L EM   G K +  +Y +I+   CK
Sbjct: 321 RKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 380

Query: 341 DG 342
            G
Sbjct: 381 XG 382



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G      ++   + + G +P+ V+YN L+
Sbjct: 106 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 165

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 166 NGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESK 208


>gi|297599210|ref|NP_001046823.2| Os02g0468500 [Oryza sativa Japonica Group]
 gi|47497324|dbj|BAD19365.1| fertility restorer homologue A-like [Oryza sativa Japonica Group]
 gi|125582052|gb|EAZ22983.1| hypothetical protein OsJ_06677 [Oryza sativa Japonica Group]
 gi|255670892|dbj|BAF08737.2| Os02g0468500 [Oryza sativa Japonica Group]
          Length = 506

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/238 (34%), Positives = 125/238 (52%), Gaps = 39/238 (16%)

Query: 145 EKYV-SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR---LQPTLVTFGTLIYGLCLE 200
            KY+  P+ C YNILI   V    L  A++VFDEM K     ++P+LVT+ TLI GLC  
Sbjct: 184 SKYLPQPNTCIYNILIKHYVKKGDLGTAFQVFDEMRKMNCADVRPSLVTYSTLIGGLCRG 243

Query: 201 LRVDEALKLKEDIMRVYNVKPD--------------GQV--------------------- 225
            ++ EA +L ED++    + PD              GQV                     
Sbjct: 244 AQMKEAFELFEDMIEKDRIVPDQLTYNLLIGGFCRLGQVEKAQSIFGFMRKNECEPNAFN 303

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           +A+LI G C  GE+  A GV EEM+R  ++ DA  Y+SL+  L + G  +E   +++EM 
Sbjct: 304 YATLINGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGINLVQEMW 363

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           ++GCK + VTYN L+ G CK+     A T+L+++  +G + N  SY +++  LC  G+
Sbjct: 364 QKGCKADVVTYNLLLEGLCKDRRIAEAVTLLEKLPSEGVQLNVASYRIVMNCLCSCGE 421



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 139/284 (48%), Gaps = 12/284 (4%)

Query: 45  YNLL--HYDLIITKLGRA-KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLER 101
           YN+L  HY +    LG A ++FDEM+++     +   + P  + +  +IG   R   ++ 
Sbjct: 195 YNILIKHY-VKKGDLGTAFQVFDEMRKM-----NCADVRPSLVTYSTLIGGLCRGAQMKE 248

Query: 102 ALQMFDEMSSFNVQMTVKF-FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
           A ++F++M   +  +  +  +N L+      G++++ + +F  M K    P+A +Y  LI
Sbjct: 249 AFELFEDMIEKDRIVPDQLTYNLLIGGFCRLGQVEKAQSIFGFMRKNECEPNAFNYATLI 308

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +G      +E A  VF+EM++  +QP  V++ +L+  LC    VDE + L +++ +    
Sbjct: 309 NGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGINLVQEMWQ-KGC 367

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           K D   +  L++GLC    ++ A+ + E++  + ++++   Y  +++ L   G   +   
Sbjct: 368 KADVVTYNLLLEGLCKDRRIAEAVTLLEKLPSEGVQLNVASYRIVMNCLCSCGEMEKAAG 427

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +L  M  RG  P+    N L+ G C       A   L  + D G
Sbjct: 428 LLGMMLGRGFVPHYAASNMLLIGLCDVGRVSDATVTLYGLVDTG 471



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 129/282 (45%), Gaps = 4/282 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R +L+ Y  +I  L R     E  ++   +    RIVP ++ +  +IG + R   +E+A 
Sbjct: 227 RPSLVTYSTLIGGLCRGAQMKEAFELFEDMIEKDRIVPDQLTYNLLIGGFCRLGQVEKAQ 286

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGC 162
            +F  M     +     + TL+N     G+++  + +F +++   V PDA SY  L+ GC
Sbjct: 287 SIFGFMRKNECEPNAFNYATLINGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLV-GC 345

Query: 163 VVSR-RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
           +     +++   +  EM ++  +  +VT+  L+ GLC + R+ EA+ L E +     V+ 
Sbjct: 346 LCRHGNVDEGINLVQEMWQKGCKADVVTYNLLLEGLCKDRRIAEAVTLLEKLPS-EGVQL 404

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   +  ++  LC+ GE+  A G+   M+           + L+  L   GR ++    L
Sbjct: 405 NVASYRIVMNCLCSCGEMEKAAGLLGMMLGRGFVPHYAASNMLLIGLCDVGRVSDATVTL 464

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
             + + G  P +  +  LI    +E     +  +LD +  +G
Sbjct: 465 YGLVDTGFMPEARCWARLIESVFRERKLRRSIELLDVLIAEG 506


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 142/264 (53%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +I+  +I    +   +E+A  +F EM  F +      +  L++     G   +  E+
Sbjct: 196 PNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEM 255

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           ++ M+++ V P+  +YN +++      R +DA+KVFDEM +R +   +VT+ TLI GLC 
Sbjct: 256 YEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCR 315

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E++ +EA K+  D M+ Y + P+   + +LI G C+VG+L  AL +  ++    +     
Sbjct: 316 EMKANEANKVM-DQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLV 374

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+ L+S   + G  +    ++KEM+ERG KP+ VTY  LI  F + ++ E A  +   M
Sbjct: 375 TYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSM 434

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
            + G   +  +Y+V++ G C  G+
Sbjct: 435 EELGLVPDVHTYSVLIHGFCIKGQ 458



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 117/226 (51%), Gaps = 3/226 (1%)

Query: 119 KFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           + +  ++N  +    LD     F ++++K   P +  +N L+   V S      W  F+E
Sbjct: 95  RLYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNE 154

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
             K ++   + +FG +I G C    ++++  L  + +R +   P+  ++ +LI G C  G
Sbjct: 155 S-KIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVE-LREFGFSPNVVIYTTLIDGCCKKG 212

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           E+  A  +  EM +  +  +   Y+ LI  LFK G K +   + ++M+E G  PN  TYN
Sbjct: 213 EIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYN 272

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +++  CK+   + AF + DEM ++G   N ++YN ++GGLC++ K
Sbjct: 273 CVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMK 318



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 113/243 (46%), Gaps = 2/243 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV-SPDACSYNILIH 160
           A ++FDEM    V   +  +NTL+       K +   ++   M+ YV +P+  +YN LI 
Sbjct: 287 AFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLID 346

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     +L  A  +  ++  R L P+LVT+  L+ G C +     A K+ ++ M    +K
Sbjct: 347 GFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKE-MEERGIK 405

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P    +  LI        +  A+ ++  M    +  D   YS LI      G+ NE   +
Sbjct: 406 PSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRL 465

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            K M E+  +PN V YN +I G+CKE     A  +  +M +K    N  SY+ ++  LCK
Sbjct: 466 FKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCK 525

Query: 341 DGK 343
           + K
Sbjct: 526 ERK 528



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 126/281 (44%), Gaps = 1/281 (0%)

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
           F     +LH L        K  ++  +I  Y +++ L+ ++  F+EM           FN
Sbjct: 74  FFTSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFN 133

Query: 123 TLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR 182
            LL   +     ++    F   +  V  D  S+ I+I GC  +  +E ++ +  E+ +  
Sbjct: 134 NLLTFVVGSSSFNQWWCFFNESKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFG 193

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
             P +V + TLI G C +  +++A  L  + M  + +  +   +  LI GL   G     
Sbjct: 194 FSPNVVIYTTLIDGCCKKGEIEKAKDLFFE-MGKFGLVANEWTYTVLIHGLFKNGIKKQG 252

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
             + E+M    +  +   Y+ +++ L K GR  +   +  EM+ERG   N VTYN LI G
Sbjct: 253 FEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGG 312

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            C+E     A  ++D+M       N I+YN ++ G C  GK
Sbjct: 313 LCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGK 353



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 149/308 (48%), Gaps = 22/308 (7%)

Query: 36  EAHPLKPFRYNLLHYDLIITKL---GRAK----MFDEMQQILHQLKHDTRIVPKEIIFCN 88
           + H + P   NL  Y+ ++ +L   GR K    +FDEM++         R V   I+  N
Sbjct: 260 QEHGVFP---NLYTYNCVMNQLCKDGRTKDAFKVFDEMRE---------RGVSCNIVTYN 307

Query: 89  -VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEK 146
            +IG   R      A ++ D+M S+ +   +  +NTL++   + GKL +   L + +  +
Sbjct: 308 TLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSR 367

Query: 147 YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA 206
            +SP   +YN+L+ G         A K+  EM +R ++P+ VT+  LI        ++ A
Sbjct: 368 GLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETA 427

Query: 207 LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266
           ++L+   M    + PD   ++ LI G C  G+++ A  + + MV   +E +  IY+++I 
Sbjct: 428 IQLRSS-MEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMIL 486

Query: 267 ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326
              K G       + ++M+E+   PN  +Y+ LI   CKE   + A  ++++M D G   
Sbjct: 487 GYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDP 546

Query: 327 NPISYNVI 334
           +    N+I
Sbjct: 547 SDTICNLI 554


>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
 gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 132/258 (51%), Gaps = 3/258 (1%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145
           +  ++ F G+  + + A    D M + NV +TV+ F  L+   +  G        F  ME
Sbjct: 97  YNEMVDFSGQVMMFDVAWYFIDLMKARNVDVTVETFLILMRRYVRAGLAAEAIHAFNRME 156

Query: 146 KY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
            Y   PD  +++ILI      RR   A + FD + K + +P ++ +  L+ G C    + 
Sbjct: 157 DYNCKPDKIAFSILISILCRERRASQAQEFFDSL-KDKFEPDVIVYTNLVRGWCRAGNIS 215

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           EA ++  + M+V  +KP+   ++ +I  LC  G+++ A  +  EM+    + ++  Y+SL
Sbjct: 216 EAERVFGE-MKVAGIKPNVYTYSIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSL 274

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           +    KAGR  +   +  +MK  GC+P++VTYN LI   CK+E+ E A  ++  M  KGC
Sbjct: 275 MRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGC 334

Query: 325 KANPISYNVILGGLCKDG 342
             N  ++N + G + K G
Sbjct: 335 APNASTFNTLFGCIAKLG 352



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 157/314 (50%), Gaps = 10/314 (3%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           N  E +  KP   + + + ++I+ L R +   + Q+    LK   +  P  I++ N++  
Sbjct: 153 NRMEDYNCKP---DKIAFSILISILCRERRASQAQEFFDSLK--DKFEPDVIVYTNLVRG 207

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPD 151
           + RA  +  A ++F EM    ++  V  ++ +++    CG++ R  ++F ++++    P+
Sbjct: 208 WCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDIFAEMLDAGCQPN 267

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
           + +YN L+   V + R E   +V+++M +   +P  VT+  LI   C +  +++A+K+  
Sbjct: 268 SITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETHCKDENLEDAIKVI- 326

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            +M      P+   F +L   +  +G+++ A  + ++M     E +   Y++L+  +F A
Sbjct: 327 GLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMKELNCEANTVTYNTLMK-MFVA 385

Query: 272 GRKNEFPAILK-EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC-KANPI 329
            +  +    LK EM E   +PN  TY  LI+ +C    +  A+    EM D+ C + +  
Sbjct: 386 SKSTDMVLKLKTEMDENKIEPNVNTYKVLITMYCGMGHWNNAYKFFREMIDEKCLRPSLP 445

Query: 330 SYNVILGGLCKDGK 343
            Y+++L  L K G+
Sbjct: 446 VYDMVLQQLRKAGQ 459



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 90/195 (46%), Gaps = 4/195 (2%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           SP+A  YN ++         + AW   D M  R +  T+ TF  L+          EA+ 
Sbjct: 93  SPEA--YNEMVDFSGQVMMFDVAWYFIDLMKARNVDVTVETFLILMRRYVRAGLAAEAIH 150

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
              + M  YN KPD   F+ LI  LC     S A    + + +DK E D  +Y++L+   
Sbjct: 151 -AFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFFDSL-KDKFEPDVIVYTNLVRGW 208

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            +AG  +E   +  EMK  G KPN  TY+ +I   C+      A  I  EM D GC+ N 
Sbjct: 209 CRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDIFAEMLDAGCQPNS 268

Query: 329 ISYNVILGGLCKDGK 343
           I+YN ++    K G+
Sbjct: 269 ITYNSLMRIHVKAGR 283



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 114/248 (45%), Gaps = 10/248 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y ++I  L R         I  ++  D    P  I + +++  + +A   E+ LQ+
Sbjct: 232 NVYTYSIVIDSLCRCGQITRAHDIFAEML-DAGCQPNSITYNSLMRIHVKAGRTEKVLQV 290

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           +++M     +     +N L+        L D +K +  + +K  +P+A ++N L  GC+ 
Sbjct: 291 YNQMKRLGCEPDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLF-GCIA 349

Query: 165 SRRLED---AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
             +L D   A +++ +M +   +   VT+ TL+         D  LKLK + M    ++P
Sbjct: 350 --KLGDVNAAHRMYKKMKELNCEANTVTYNTLMKMFVASKSTDMVLKLKTE-MDENKIEP 406

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDK-IEMDAGIYSSLISALFKAGRKNEFPAI 280
           +   +  LI   C +G  + A     EM+ +K +     +Y  ++  L KAG+  +   +
Sbjct: 407 NVNTYKVLITMYCGMGHWNNAYKFFREMIDEKCLRPSLPVYDMVLQQLRKAGQLKKHEEL 466

Query: 281 LKEMKERG 288
           +++M +RG
Sbjct: 467 VEKMVDRG 474


>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           velutina]
          Length = 406

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 141/258 (54%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++  Y R  +L+   ++   M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 150 PSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDADEL 209

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 210 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 269

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L +D+ R   +KPD   + +LI G C  G L  A   ++ ++++ I +D  
Sbjct: 270 KGDLKQAHDLIDDMSR-KGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDV 328

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           +Y++LIS L + GR  +   +L+EM   G  P++ TY  +I+ FCK+ D      +L EM
Sbjct: 329 VYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEM 388

Query: 320 GDKGCKANPISYNVILGG 337
              G   + ++YNV++ G
Sbjct: 389 QRDGHVPSVVTYNVLMNG 406



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 129/239 (53%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P A SYN L++G + 
Sbjct: 105 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIR 164

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++ +++   M+   +QP + T+  LI GLC E ++D+A +L ++ M V  + P+G 
Sbjct: 165 LGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFDE-MLVKGLVPNGV 223

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ +M
Sbjct: 224 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDM 283

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G KP+ +TY  LI G CKE    +AF     +  +  + + + Y  ++ GLC++G+
Sbjct: 284 SRKGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGR 342



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 129/244 (52%), Gaps = 6/244 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +   +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 136 AQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKS--AMLASGVQPDVYTYSVL 193

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G     +++DA ++FDEM+ + L P  VTF TLI G C   RVD A+++ + ++   +
Sbjct: 194 INGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QS 252

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   + +LI GLC  G+L  A  + ++M R  ++ D   Y++LI    K G      
Sbjct: 253 LLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGVLVSAF 312

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
              K + +   + + V Y ALISG C+E     A  +L EM   G   +  +Y +I+   
Sbjct: 313 EHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEF 372

Query: 339 CKDG 342
           CK G
Sbjct: 373 CKKG 376



 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G      ++   + + G +P++V+YN L+
Sbjct: 100 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLM 159

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +    +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 160 NGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 202


>gi|449465535|ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 157/344 (45%), Gaps = 40/344 (11%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           A   K F++    Y+L+I  LG+ K F+ +  ++  +K    I+ +E  F  +   Y RA
Sbjct: 146 AEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKG-ILSRET-FALITRRYARA 203

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSY 155
           R ++ A++ F++M  F  QM V  FN LL+       + + +E+F  M+     PD  SY
Sbjct: 204 RKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSY 263

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
            IL+ G    + L    +V+ EM     +P +VTFG LI   C   + DEA++L  + M 
Sbjct: 264 TILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHE-ME 322

Query: 216 VYNVKPDGQVFASLIKGL-----------------------------------CAVGELS 240
             N+KP   VF +LI GL                                   C   +++
Sbjct: 323 AKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMA 382

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM-KERGCKPNSVTYNAL 299
            A  + +EM +  +  ++  Y  ++  L K  +  E  ++ + M +E GC+P   TY+ +
Sbjct: 383 YAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIM 442

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I  FC EE  + A  I DEM  KG       ++ ++  LC + K
Sbjct: 443 IRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHK 486



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 119/235 (50%), Gaps = 4/235 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  +++ + ++I    +A+ +DE  ++ H+++    I P   +FC +I   G  + L+ A
Sbjct: 291 FEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKN-IKPSPHVFCTLINGLGSEKRLKEA 349

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
           L+ F+++           +N ++       K+     +   M K  V P++ +Y+I++H 
Sbjct: 350 LEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHH 409

Query: 162 CVVSRRLEDAWKVFDEMVKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
            +  R+ ++A+ VF  M +    +PTL T+  +I   C E RVD A+++  D M+   V 
Sbjct: 410 LIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQI-WDEMKAKGVL 468

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
           P   +F++LI  LC   +L  A    +EM+   I   A ++S+L  AL   GRK+
Sbjct: 469 PGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALLDDGRKD 523


>gi|449503427|ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71060, mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 165/370 (44%), Gaps = 49/370 (13%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L +L     LAL  F+          A   K F++    Y+L+I  LG+ K F+ +  ++
Sbjct: 129 LKKLSNAGFLALSFFR---------WAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLV 179

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130
             +K    I+ +E  F  +   Y RAR ++ A++ F++M  F  QM V  FN LL+    
Sbjct: 180 SDMKRKG-ILSRET-FALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCK 237

Query: 131 CGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
              + + +E+F  M+     PD  SY IL+ G    + L    +V+ EM     +P +VT
Sbjct: 238 SRNVKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVT 297

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGL---------------- 233
           FG LI   C   + DEA++L  + M   N+KP   VF +LI GL                
Sbjct: 298 FGILINAHCKARKYDEAIRLFHE-MEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQL 356

Query: 234 -------------------CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
                              C   +++ A  + +EM +  +  ++  Y  ++  L K  + 
Sbjct: 357 KLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKS 416

Query: 275 NEFPAILKEM-KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            E  ++ + M +E GC+P   TY+ +I  FC EE  + A  I DEM  KG       ++ 
Sbjct: 417 KEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFST 476

Query: 334 ILGGLCKDGK 343
           ++  LC + K
Sbjct: 477 LINSLCHEHK 486



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 119/235 (50%), Gaps = 4/235 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  +++ + ++I    +A+ +DE  ++ H+++    I P   +FC +I   G  + L+ A
Sbjct: 291 FEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKN-IKPSPHVFCTLINGLGSEKRLKEA 349

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
           L+ F+++           +N ++       K+     +   M K  V P++ +Y+I++H 
Sbjct: 350 LEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHH 409

Query: 162 CVVSRRLEDAWKVFDEMVKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
            +  R+ ++A+ VF  M +    +PTL T+  +I   C E RVD A+++  D M+   V 
Sbjct: 410 LIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQI-WDEMKAKGVL 468

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
           P   +F++LI  LC   +L  A    +EM+   I   A ++S+L  AL   GRK+
Sbjct: 469 PGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALLDDGRKD 523


>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 492

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 159/340 (46%), Gaps = 11/340 (3%)

Query: 12  PRLQKDPKL---ALQLFKNPNPNP----NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFD 64
           PR+   P+L    L+   N  P         + H L  + ++   +D  +    R + F+
Sbjct: 60  PRIHWTPELVNKTLKRLWNHGPKALLFFKHLDRH-LPSYTHSPSSFDHAVDIAARMRDFN 118

Query: 65  EMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124
               ++ +++   R+ P       +   Y       RA++ F  M    +   +  FNTL
Sbjct: 119 SAWALVGRMR-SLRLGPSPKTLAILAERYASIGKPHRAVRTFLSMHEHGLHQDLHSFNTL 177

Query: 125 LNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ 184
           L+      +++   +L + ++    PD  SYNIL +G  + +R   A +V  EMV+R ++
Sbjct: 178 LDILCKSNRVETAHDLLRTLKSRFRPDTVSYNILANGYCLKKRTPMALRVLKEMVQRGIE 237

Query: 185 PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
           PT+VT+ T++ G     ++ EA +   + M+    + D   + ++I G    GE+  A  
Sbjct: 238 PTMVTYNTMLKGYFRSNQIKEAWEFYLE-MKKRKCEIDVVSYTTVIHGFGEAGEVKKAKR 296

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG-CKPNSVTYNALISGF 303
           V +EMV++ +  +   Y++LI    K        A+ +EM   G C PN VT+N +I G 
Sbjct: 297 VFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVVTFNVVIRGL 356

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C   D E A   ++ MG+ G +A+  +YNV++   C  G+
Sbjct: 357 CHVGDMERALGFMERMGEHGLRASVQTYNVVIRYFCDAGE 396



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 139/301 (46%), Gaps = 6/301 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L  ++ ++  L ++   +    +L  LK  +R  P  + +  +   Y   +    AL++
Sbjct: 170 DLHSFNTLLDILCKSNRVETAHDLLRTLK--SRFRPDTVSYNILANGYCLKKRTPMALRV 227

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
             EM    ++ T+  +NT+L       ++    E +  M+K     D  SY  +IHG   
Sbjct: 228 LKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSYTTVIHGFGE 287

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  ++ A +VFDEMVK  + P + T+  LI   C +  V  A+ + E+++R     P+  
Sbjct: 288 AGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVV 347

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F  +I+GLC VG++  ALG  E M    +      Y+ +I     AG   +   +  +M
Sbjct: 348 TFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIRYFCDAGEIEKGLEVFGKM 407

Query: 285 KERGCKPNSVTYNALISGFC---KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            +  C PN  TYN LIS      K ED   A  +L EM ++G      ++N +L GL   
Sbjct: 408 GDGLCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMEMVERGFLPRKFTFNRVLNGLVIT 467

Query: 342 G 342
           G
Sbjct: 468 G 468


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 128/241 (53%), Gaps = 2/241 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           ALQ+   +    VQ  V  +NT+++       ++   +L+ +++ K +SPD  +Y+ LI 
Sbjct: 180 ALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALIS 239

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G  +  +L DA  +F++M+   + P + TF  L+ G C E RV EA  +   +M+   +K
Sbjct: 240 GFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMK-QGIK 298

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   + SL+ G C V +++ A  +   M +  +  +   Y+ +I+   K  + +E   +
Sbjct: 299 PDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNL 358

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            KEM  +   P+ VTYN+LI G CK      A  ++DEM D+G   + I+YN IL  LCK
Sbjct: 359 FKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCK 418

Query: 341 D 341
           +
Sbjct: 419 N 419



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 161/303 (53%), Gaps = 5/303 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV-PKEIIFCNVIGFYGRARLLER 101
           F  N + Y  +I  L +        Q+L ++  D ++V P  +++  +I    + +L+  
Sbjct: 157 FHLNKVCYGTLINGLCKVGQTSAALQLLRRV--DGKLVQPNVVMYNTIIDSMCKVKLVNE 214

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           A  ++ EM S  +   V  ++ L++     GKL+    LF +++ + ++PD  +++IL+ 
Sbjct: 215 AFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVD 274

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     R+++A  V   M+K+ ++P +VT+ +L+ G CL  +V++A K   + M    V 
Sbjct: 275 GFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKA-KSIFNTMAQGGVT 333

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
            + Q +  +I G C + ++  A+ + +EM    I  D   Y+SLI  L K+G+ +    +
Sbjct: 334 ANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKL 393

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + EM +RG   + +TYN+++   CK    + A  +L +M D+G + +  +Y +++ GLCK
Sbjct: 394 VDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCK 453

Query: 341 DGK 343
            G+
Sbjct: 454 GGR 456



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 151/297 (50%), Gaps = 3/297 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ II  + + K+ +E   +  ++     I P  + +  +I  +     L  A+ +
Sbjct: 195 NVVMYNTIIDSMCKVKLVNEAFDLYSEMV-SKGISPDVVTYSALISGFCILGKLNDAIGL 253

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           F++M S  +   V  F+ L++     G++   K +  +M K  + PD  +Y  L+ G  +
Sbjct: 254 FNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCL 313

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            +++  A  +F+ M +  +   + ++  +I G C   +VDEA+ L ++ M   N+ PD  
Sbjct: 314 VKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKE-MHCKNIIPDVV 372

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SLI GLC  G++S AL + +EM    +  D   Y+S++ AL K  + ++  A+L +M
Sbjct: 373 TYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKM 432

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           K+ G +P+  TY  LI G CK    + A  I +++  KG      +Y V++ G C +
Sbjct: 433 KDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDN 489



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 132/290 (45%), Gaps = 35/290 (12%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIM 144
           F  ++G   +    + A+ +  EM    +   +  FN L+N     G       +F  I+
Sbjct: 59  FGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANIL 118

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC------ 198
           +K   P+A +   LI G  +  ++  A    D++V        V +GTLI GLC      
Sbjct: 119 KKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTS 178

Query: 199 --LEL--RVDEAL------------------KLKEDIMRVYN------VKPDGQVFASLI 230
             L+L  RVD  L                  KL  +   +Y+      + PD   +++LI
Sbjct: 179 AALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALI 238

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
            G C +G+L+ A+G+  +M+ ++I  D   +S L+    K GR  E   +L  M ++G K
Sbjct: 239 SGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIK 298

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           P+ VTY +L+ G+C  +    A +I + M   G  AN  SYN+++ G CK
Sbjct: 299 PDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCK 348



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 124/246 (50%), Gaps = 2/246 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + +C+++  Y   + + +A  +F+ M+   V   V+ +N ++N      K+D   
Sbjct: 297 IKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAM 356

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            LF+ M  K + PD  +YN LI G   S ++  A K+ DEM  R +    +T+ +++  L
Sbjct: 357 NLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDAL 416

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C   +VD+A+ L    M+   ++PD   +  LI GLC  G L  A  + E+++     + 
Sbjct: 417 CKNHQVDKAIALLTK-MKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNIT 475

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+ +I         ++  A+L +M++ GC PN+ TY  +I    ++++ + A  +L 
Sbjct: 476 VYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLR 535

Query: 318 EMGDKG 323
           EM  +G
Sbjct: 536 EMIARG 541



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 1/175 (0%)

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A  +  EM    +   LVTF  LI           +  +  +I++    +P+     +
Sbjct: 73  QTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILK-KGYEPNAITLTT 131

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LIKGLC  G++  AL   +++V     ++   Y +LI+ L K G+ +    +L+ +  + 
Sbjct: 132 LIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKL 191

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +PN V YN +I   CK +    AF +  EM  KG   + ++Y+ ++ G C  GK
Sbjct: 192 VQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGK 246


>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
          Length = 864

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 159/338 (47%), Gaps = 43/338 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +L  Y LII  L ++K  D+ +++L Q+ +  TR  P  I + ++I  Y  + +   +++
Sbjct: 259 DLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTR--PNSITYNSLIHGYSISGMWNESVR 316

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
           +F +MSS  V  TV   N+ ++     G+ +  K +F  M  K   PD  SY+ ++HG  
Sbjct: 317 VFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYA 376

Query: 164 VSR-------------------------------------RLEDAWKVFDEMVKRRLQPT 186
            +                                       ++ A  +F++M  + + P 
Sbjct: 377 TATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPD 436

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
            VTF T+I  LC   R+D+AL  K + M    V P   V+  LI+G C  GEL  A  + 
Sbjct: 437 TVTFATVISSLCRIGRLDDALH-KFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELI 495

Query: 247 EEMVRDKIEMDAGIY-SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
            EM+   I      Y SS+I+ L K GR  E   I+  M + G +PN VT+N+L+ G+C 
Sbjct: 496 SEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCL 555

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             + E AF +LD M   G + N   Y  ++ G CK+G+
Sbjct: 556 VGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGR 593



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 132/265 (49%), Gaps = 3/265 (1%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P + +F  +I  Y R  ++++A+ +F++M +  +      F T+++     G+LD   
Sbjct: 398 IAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDAL 457

Query: 139 ELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT-FGTLIYG 196
             F  +++  V P    Y  LI GC     L  A ++  EM+ + + P  V  F ++I  
Sbjct: 458 HKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINN 517

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC E RV E   +  D+M     +P+   F SL++G C VG +  A  + + M    IE 
Sbjct: 518 LCKEGRVAEGKDIM-DMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEP 576

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +  IY +L+    K GR ++   + ++M  +G KP SV Y+ ++ G  +     AA  + 
Sbjct: 577 NCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMF 636

Query: 317 DEMGDKGCKANPISYNVILGGLCKD 341
            EM + G   +  +Y V+LGGLC++
Sbjct: 637 HEMIESGTTVSIHTYGVVLGGLCRN 661



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 143/296 (48%), Gaps = 4/296 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++++I    R  M D+   I   ++ +  ++P  + F  VI    R   L+ AL  F+ M
Sbjct: 405 FNILINAYARCGMMDKAMLIFEDMQ-NKGMIPDTVTFATVISSLCRIGRLDDALHKFNHM 463

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSY-NILIHGCVVSRR 167
               V  +   +  L+      G+L + KEL  ++M K + P    Y + +I+      R
Sbjct: 464 VDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGR 523

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           + +   + D MV+   +P +VTF +L+ G CL   ++EA  L  D M    ++P+  ++ 
Sbjct: 524 VAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALL-DAMASIGIEPNCYIYG 582

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +L+ G C  G +  AL V  +M+   ++  + +YS ++  LF+A R      +  EM E 
Sbjct: 583 TLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIES 642

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G   +  TY  ++ G C+    + A  +L+++     K + I++N+++  + K G+
Sbjct: 643 GTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGR 698



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERAL----QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           PK  I       +G A   +  L     +F+ M +  +      FN L+N    CG +D+
Sbjct: 361 PKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDK 420

Query: 137 MKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              +F+ M+ K + PD  ++  +I       RL+DA   F+ MV   + P+   +G LI 
Sbjct: 421 AMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQ 480

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C    + +A +L  ++M      P  + F+S+I  LC  G ++    + + MV+    
Sbjct: 481 GCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQR 540

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            +   ++SL+      G   E  A+L  M   G +PN   Y  L+ G+CK    + A T+
Sbjct: 541 PNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTV 600

Query: 316 LDEMGDKGCKANPISYNVILGGL 338
             +M  KG K   + Y++IL GL
Sbjct: 601 FRDMLHKGVKPTSVLYSIILHGL 623



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 136/303 (44%), Gaps = 45/303 (14%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKH--DTRIVPKEIIF-CNVIGFYGRARLLERALQMF 106
           +  +I+ L R    D+    LH+  H  D  + P E ++ C + G      L+ +A ++ 
Sbjct: 440 FATVISSLCRIGRLDDA---LHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELV-KAKELI 495

Query: 107 DEMSSFNVQM-TVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            EM + ++    VK+F++++N     G++   K++  +M +    P+  ++N L+ G  +
Sbjct: 496 SEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCL 555

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +E+A+ + D M    ++P    +GTL+ G C   R+D+AL +  D++    VKP   
Sbjct: 556 VGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLH-KGVKPTSV 614

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRD-------------------------------- 252
           +++ ++ GL      + A  +  EM+                                  
Sbjct: 615 LYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKL 674

Query: 253 ---KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
               ++ D   ++ +ISA+FK GR+ E   +   +   G  PN  TY+ +I+   KEE +
Sbjct: 675 FAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESY 734

Query: 310 EAA 312
           E A
Sbjct: 735 EEA 737



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 163/349 (46%), Gaps = 27/349 (7%)

Query: 3   TSSIRLACLPRLQKDPKLAL----QLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLG 58
           T +I + C  R+ + P L L    +L KN    P+D        F Y+L++  +   ++ 
Sbjct: 158 TYNILIDCYRRVHR-PDLGLAIVGRLLKN-GLGPDD--------FSYSLIYGFVKDGEVD 207

Query: 59  RAK-MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT 117
           +A  +F EM +          ++PK +I  ++I    + + +++A  +  +M    +   
Sbjct: 208 KAHCLFLEMME--------QGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPD 259

Query: 118 VKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFD 176
           +  ++ +++       +D+ + +  Q++E    P++ +YN LIHG  +S    ++ +VF 
Sbjct: 260 LFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFK 319

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
           +M    + PT+    + I+ L    R +EA K   D M +   KPD   +++++ G    
Sbjct: 320 QMSSCGVIPTVDNCNSFIHALFKHGRTNEA-KCIFDSMVLKGPKPDIISYSTMLHGYATA 378

Query: 237 GELSLA--LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
            +  LA    +   M+   I  +  +++ LI+A  + G  ++   I ++M+ +G  P++V
Sbjct: 379 TDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTV 438

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           T+  +IS  C+    + A    + M D G   +   Y  ++ G C  G+
Sbjct: 439 TFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGE 487



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 105/223 (47%), Gaps = 8/223 (3%)

Query: 127 PKLTCGKLDRMK-ELFQIMEKYVSPDAC-----SYNILIHGCVVSRRLEDAWKVFDEMVK 180
           P   CG    +  ELF+ M+++  P        +YNILI       R +    +   ++K
Sbjct: 125 PSAACGDAPALAIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLK 184

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
             L P   ++ +LIYG   +  VD+A  L  ++M    V P   +  S+IK LC + E+ 
Sbjct: 185 NGLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMME-QGVLPKILICNSIIKELCKMKEMD 242

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  + ++MV   I  D   YS +I  L K+   ++   +L++M E G +PNS+TYN+LI
Sbjct: 243 KAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLI 302

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            G+     +  +  +  +M   G      + N  +  L K G+
Sbjct: 303 HGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGR 345


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 140/281 (49%), Gaps = 10/281 (3%)

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
           FDEM         D  + P  + + ++I  Y     L  A +++ EM+   +      F 
Sbjct: 459 FDEMI--------DKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFT 510

Query: 123 TLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
           TL++      ++     LF +++E+ + P+  +YN++I G         A+++ ++MV++
Sbjct: 511 TLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQK 570

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
            L P   T+  LI  LC   RV EA K  +D+ R +  K +   +++L+ G C  G L  
Sbjct: 571 GLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREH-FKLNEMCYSALLHGYCKEGRLRD 629

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           ALGV  EMV+  ++MD   Y+ LI    K    +    +LK M ++  +P+ V Y ++I 
Sbjct: 630 ALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMID 689

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           G+ K    + AF I D M D+GC  N ++Y  ++  LCK G
Sbjct: 690 GYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAG 730



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 128/265 (48%), Gaps = 2/265 (0%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           VP E    +++    R   +  A  + + +       ++  +N L+N     GK D  + 
Sbjct: 328 VPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAEL 387

Query: 140 LFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           LF+ M EK +  +  +Y+ILI       +L+ A     +M+   ++ T+  + +LI G C
Sbjct: 388 LFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHC 447

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
               +  A+   ++++    +KP    + SLI G C  G+L  A  +  EM    I  + 
Sbjct: 448 KLGNLSAAVSFFDEMID-KGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNT 506

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             +++LISALF+A R  +   +  EM E+   PN VTYN +I G CKE +   AF +L++
Sbjct: 507 YTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQ 566

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M  KG   +  +Y  ++  LC  G+
Sbjct: 567 MVQKGLVPDTYTYRPLISSLCSTGR 591



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 148/321 (46%), Gaps = 21/321 (6%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF--------CNVIGF 92
           K F ++ + + ++I  L  A +F     +L  L     + P+E+          C+ I  
Sbjct: 99  KNFNHSTMSFCILIHALVNANLFWPASSLLQTLLLRGGLDPREVFEALLDCFEKCDFISS 158

Query: 93  YGRARLLERALQ---MFDEMSSFNVQMT------VKFFNTLLNPKLTCGKLDRMKELF-Q 142
            G   L++  +Q   MFD +  F +         V+    +LN      ++D +  LF +
Sbjct: 159 LGFDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLFGE 218

Query: 143 IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR 202
           I+   + PD   Y  +I      +    A ++   M    L   +V +  LI+GLC   R
Sbjct: 219 ILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSDLN--VVVYNVLIHGLCKNKR 276

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
           V EA+++K  +++   +      + +L+ GLC V E  +  GV +EM+           S
Sbjct: 277 VWEAVEIKNGLIQ-KGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALS 335

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           SL+  L + G+  +   ++  +K+ G  P+   YNALI+  CK+  F+ A  +  EMG+K
Sbjct: 336 SLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEK 395

Query: 323 GCKANPISYNVILGGLCKDGK 343
           G  AN ++Y++++   C+ GK
Sbjct: 396 GLCANDVTYSILIDSFCRRGK 416



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 144/340 (42%), Gaps = 42/340 (12%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP    ++ Y  +I+         E  ++ H++     I P    F  +I    RA  +
Sbjct: 467 LKP---TVVSYTSLISGYCNKGKLHEAFRLYHEMT-GKGIAPNTYTFTTLISALFRANRM 522

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDA------ 152
             A ++FDEM   N+      +N ++      G   +  EL  Q+++K + PD       
Sbjct: 523 TDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPL 582

Query: 153 ----CS-------------------------YNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
               CS                         Y+ L+HG     RL DA  V  EMVKR +
Sbjct: 583 ISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGV 642

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
              LV +  LI G   E        L ++ M    ++PD  ++ S+I G    G +  A 
Sbjct: 643 DMDLVCYAVLIDGTIKEQDTSAVFGLLKN-MHDQRLRPDKVIYTSMIDGYSKAGSVKKAF 701

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
           G+ + M+ +    +   Y++LI+ L KAG  ++   + KEM      PN VTY   +   
Sbjct: 702 GIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHL 761

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +E   E A  + ++M  KG  AN +SYN+++ G CK G+
Sbjct: 762 AREGSMEKAVQLHNDM-LKGLLANTVSYNILVRGFCKLGR 800



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 133/295 (45%), Gaps = 4/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I+ L       E ++ +  L H       E+ +  ++  Y +   L  AL +  EM
Sbjct: 579 YRPLISSLCSTGRVCEAKKFIDDL-HREHFKLNEMCYSALLHGYCKEGRLRDALGVCREM 637

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
               V M +  +  L++  +       +  L + M ++ + PD   Y  +I G   +  +
Sbjct: 638 VKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSV 697

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A+ ++D M+     P +VT+ TLI  LC    +D+A  L ++ M V N  P+   +  
Sbjct: 698 KKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKE-MLVSNSTPNHVTYCC 756

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
            +  L   G +  A+ +  +M++  +      Y+ L+    K GR  E   +L EM +  
Sbjct: 757 FLDHLAREGSMEKAVQLHNDMLKGLLANTVS-YNILVRGFCKLGRVEEATKLLDEMIDNA 815

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             P+ +TY+ +I   C+  + + A    D M +KG K + ++YN ++ G C  G+
Sbjct: 816 IFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGE 870



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 115/263 (43%), Gaps = 36/263 (13%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           HD R+ P ++I+ ++I  Y +A  +++A  ++D M        +  + TL+N     G +
Sbjct: 673 HDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLM 732

Query: 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           D+ + L                               WK   EM+     P  VT+   +
Sbjct: 733 DKAELL-------------------------------WK---EMLVSNSTPNHVTYCCFL 758

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
             L  E  +++A++L  D+++   +  +   +  L++G C +G +  A  + +EM+ + I
Sbjct: 759 DHLAREGSMEKAVQLHNDMLK--GLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAI 816

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
             D   YS++I    + G  +        M  +G KP+++ YN LI G C   +   AF 
Sbjct: 817 FPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFE 876

Query: 315 ILDEMGDKGCKANPISYNVILGG 337
           + D+M  +G K N  ++  +  G
Sbjct: 877 LRDDMIRRGVKPNQATHKSLSHG 899


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 175/372 (47%), Gaps = 46/372 (12%)

Query: 7   RLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEM 66
            +A + R Q DP  AL++F     N   TE      F++ L  Y  +I KLG    F+ M
Sbjct: 9   HVAAVIRYQNDPLNALKMF-----NQVKTE----DGFKHTLETYKCMIEKLGLHGKFEAM 59

Query: 67  QQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126
           + +L +++ +      E ++  ++  YGR   ++ A+ +F+ M  ++ + +V+ +N ++N
Sbjct: 60  EDVLAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMN 119

Query: 127 PKLTCGKLDRMKELFQIMEKY-VSPD------------------------------ACSY 155
             +  G   +  +++  M+   + PD                               C +
Sbjct: 120 ILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEF 179

Query: 156 NILIHGCVVSRRLE-----DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           N + +  V+S   +     +A+ +FDEM+K+ + P ++TF  LI+ LC +  V E+ KL 
Sbjct: 180 NAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLF 239

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
             +M+   V P+   F   I+GLC  G +  A  + E +V + +  D   Y++LI    K
Sbjct: 240 SKVMK-RGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCK 298

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
             +  E    L +M   G +PN  TYN +I+GFCK    + A  IL +   KG   +  +
Sbjct: 299 HSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFT 358

Query: 331 YNVILGGLCKDG 342
           Y+ ++ GLC DG
Sbjct: 359 YSSLINGLCNDG 370



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 152/335 (45%), Gaps = 40/335 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           NL  +++ I  L R    DE  ++L  +  +  + P  I +  +I GF   ++L+E A  
Sbjct: 250 NLFTFNIFIQGLCRKGAIDEAARLLESIVSEG-LTPDVISYNTLICGFCKHSKLVE-AEC 307

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCV 163
              +M +  V+     +NT++N     G +    ++ +  M K   PD  +Y+ LI+G  
Sbjct: 308 YLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLC 367

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
               +  A  VF E +++  + +++ + TL+ GL  +  V +AL+L +D+M  +   PD 
Sbjct: 368 NDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMME-HGCSPDI 426

Query: 224 QVFASLIKGLCAVGELSLALGVKEE----------------------------------- 248
             +  ++ GLC +G LS A G+  +                                   
Sbjct: 427 WTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDT 486

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M+   I  D   Y++L++ L KA + +      K M E+GC PN +TYN LI  FCK+  
Sbjct: 487 MLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRK 546

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              A  +  EM  +G   + ++   ++ GLC +G+
Sbjct: 547 VSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGE 581



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 134/304 (44%), Gaps = 12/304 (3%)

Query: 21  ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
           ALQL K       D   H   P   ++  Y+L++  L +     +   IL+        +
Sbjct: 410 ALQLMK-------DMMEHGCSP---DIWTYNLVVNGLCKMGCLSDANGILNDAIAKG-CI 458

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    F  +I  Y + R +++A+++ D M S  +   V  +NTLLN      KLD + + 
Sbjct: 459 PDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDT 518

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ M EK  +P+  +YNILI      R++ +A ++F EM  R L P +VT  TLI GLC 
Sbjct: 519 FKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCS 578

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
              +D+A +L   I + Y       +F  +I   C    +S+A  +  +M       D  
Sbjct: 579 NGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNY 638

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y  +I +  K G  +     L E   +G  P+  T   +++  C       A  I++ M
Sbjct: 639 TYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLM 698

Query: 320 GDKG 323
              G
Sbjct: 699 VQNG 702



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 141/337 (41%), Gaps = 45/337 (13%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y+ II    +A M     +IL         +P E  + ++I        + RA+ +
Sbjct: 320 NEFTYNTIINGFCKAGMMQNADKILRDAMFKG-FIPDEFTYSSLINGLCNDGDMNRAMAV 378

Query: 106 FDEMSSFNVQMTVKFFNTLLN----PKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161
           F E      + ++  +NTL+       L    L  MK++   ME   SPD  +YN++++G
Sbjct: 379 FYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDM---MEHGCSPDIWTYNLVVNG 435

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 L DA  + ++ + +   P + TF TLI G C +  +D+A+++  D M  + + P
Sbjct: 436 LCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEIL-DTMLSHGITP 494

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +L+ GLC   +L   +   + M+      +   Y+ LI +  K  + +E   + 
Sbjct: 495 DVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELF 554

Query: 282 KEMKERGCKPNSVT------------------------------------YNALISGFCK 305
           KEMK RG  P+ VT                                    +N +I+ FC 
Sbjct: 555 KEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCX 614

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + +   A  +  +MG   C  +  +Y V++   CK G
Sbjct: 615 KLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTG 651



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 110/221 (49%), Gaps = 3/221 (1%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           FNTL++       +D+  E+   M  + ++PD  +YN L++G   +R+L++    F  M+
Sbjct: 464 FNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAML 523

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           ++   P ++T+  LI   C + +V EA++L ++ M+   + PD     +LI GLC+ GEL
Sbjct: 524 EKGCTPNIITYNILIESFCKDRKVSEAMELFKE-MKTRGLTPDIVTLCTLICGLCSNGEL 582

Query: 240 SLALGVKEEMVRD-KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
             A  +   + ++ K      I++ +I+A       +    +  +M    C P++ TY  
Sbjct: 583 DKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRV 642

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +I  +CK  + + A T L E   KG   +  +   +L  LC
Sbjct: 643 MIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLC 683


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 134/272 (49%), Gaps = 18/272 (6%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKY 147
           ++  + +A L+E+A + F+EM        V  +  L++  L   K+    ELF+ M  + 
Sbjct: 524 MVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG 583

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR----------------LQPTLVTFG 191
             P+  +Y+ LI G   + ++E A ++F+ M   +                 +P +VT+G
Sbjct: 584 CLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYG 643

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
            L+ G C   RV+EA KL  D M +   +P+  V+ +LI GLC VG+L  A  VK EM  
Sbjct: 644 ALLDGFCKSHRVEEARKLL-DAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSE 702

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
                    YSSLI   FK  R++    +L +M E  C PN V Y  +I G CK    + 
Sbjct: 703 HGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDE 762

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           A+ ++  M +KGC+ N ++Y  ++ G    GK
Sbjct: 763 AYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGK 794



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 141/309 (45%), Gaps = 11/309 (3%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  + + Y  +I+ L  A +F+E    L++++  T  +P  + +  ++      + L R 
Sbjct: 298 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRA-TSCLPNVVTYSTLLCGCLNKKQLGRC 356

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHG 161
            ++ + M       + K FN+L++   T G      +L + M K    P    YNILI G
Sbjct: 357 KRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILI-G 415

Query: 162 CVVSRR-------LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
            +   +       L+ A K + EM+   +    +   +    LC   + ++A  +  +++
Sbjct: 416 SICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMI 475

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
                 PD   ++ ++  LC   ++ LA  + EEM R  +  D   Y+ ++ +  KAG  
Sbjct: 476 G-QGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLI 534

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            +      EM+E GC PN VTY ALI  + K +    A  + + M  +GC  N ++Y+ +
Sbjct: 535 EQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSAL 594

Query: 335 LGGLCKDGK 343
           + G CK G+
Sbjct: 595 IDGHCKAGQ 603



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 91/224 (40%), Gaps = 5/224 (2%)

Query: 119 KFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           +F N L+      G     ++EL ++ +    P   +YN LI   + + RL+ A  +  E
Sbjct: 201 EFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHRE 260

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M    L+    T     Y LC   +  EAL L E      N  PD   +  LI GLC   
Sbjct: 261 MSLANLRMDGFTLRCFAYSLCKVGKWREALTLVE----TENFVPDTVFYTKLISGLCEAS 316

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
               A+     M       +   YS+L+       +      +L  M   GC P+   +N
Sbjct: 317 LFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFN 376

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           +L+  +C   D   A+ +L +M   G     + YN+++G +C D
Sbjct: 377 SLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGD 420



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 4/161 (2%)

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
           R +P+  T+  LI       R+D A  +  + M + N++ DG         LC VG+   
Sbjct: 230 RFRPSRSTYNCLIQAFLKADRLDSASLIHRE-MSLANLRMDGFTLRCFAYSLCKVGKWRE 288

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           AL + E    +    D   Y+ LIS L +A    E    L  M+   C PN VTY+ L+ 
Sbjct: 289 ALTLVET---ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLC 345

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           G   ++       +L+ M  +GC  +P  +N ++   C  G
Sbjct: 346 GCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSG 386



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 105/246 (42%), Gaps = 5/246 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L +    DE  +++ Q+  +    P  + +  +I  +G    +E  L++
Sbjct: 743 NVVIYTEMIDGLCKVGKTDEAYKLM-QMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 801

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILIHGCVV 164
            + M S  V      +  L++     G LD    L + M++   P     Y  +I G   
Sbjct: 802 LERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEG--F 859

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD-G 223
           ++   ++  + DE+ +    P L  +  LI  L    R++ AL+L E++        D  
Sbjct: 860 NKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYS 919

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + SLI+ LC   ++  A  +  EM +  +  +   + SLI  LF+  + +E   +L  
Sbjct: 920 STYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDF 979

Query: 284 MKERGC 289
           +    C
Sbjct: 980 ISHMVC 985


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 134/250 (53%), Gaps = 2/250 (0%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDAC 153
           + R  +     ++E+       ++ FFN L++     G +   + +F  + K+ + P   
Sbjct: 101 KLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVV 160

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           SYN L++G +    L++ +++   M+   +QP + T+  LI GLC E ++D+A +L ++ 
Sbjct: 161 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDE- 219

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M V  + P+G  F +LI G C  G + LA+ + ++M+   +  D   Y++LI  L K G 
Sbjct: 220 MLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGD 279

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            N+   ++ EM  +G KP+  TY  LI G CKE D +AAF     M  +  + + ++Y  
Sbjct: 280 LNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTA 339

Query: 334 ILGGLCKDGK 343
           I+ GLC++G+
Sbjct: 340 IISGLCQEGR 349



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 141/258 (54%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++  Y R   L+   ++   M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 157 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 216

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 217 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 276

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  +++A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 277 KGDLNQAHGLIDE-MSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDV 335

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+++IS L + GR  +   +L+EM   G KP++ TY  +I+ FCK+ D      +L EM
Sbjct: 336 AYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEM 395

Query: 320 GDKGCKANPISYNVILGG 337
              G   +  +YNV++ G
Sbjct: 396 QRNGHVPSVXTYNVLMNG 413



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 133/244 (54%), Gaps = 6/244 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 143 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS--AMLASGVQPDVYTYSVL 200

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G     +++DA ++FDEM+ + L P  VTF TLI G C   RVD A+++ + ++   +
Sbjct: 201 INGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QS 259

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   + +LI GLC  G+L+ A G+ +EM    ++ D   Y++LI    K G  +   
Sbjct: 260 LLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAF 319

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
              K M +   + + V Y A+ISG C+E     A  +L EM   G K +  +Y +I+   
Sbjct: 320 EHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEF 379

Query: 339 CKDG 342
           CK G
Sbjct: 380 CKKG 383


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 164/366 (44%), Gaps = 70/366 (19%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y+++I  L +A   D+  ++LH++  D  + P  + F +++    +A   ERA  +
Sbjct: 9   DVFTYNILIDGLCKASKTDKASEMLHEMV-DRGVTPDTVTFNSIMDGLCKAGKFERAHSL 67

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK--------------------------- 138
              M+  N + +   +NTL++       +DR K                           
Sbjct: 68  LAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCK 127

Query: 139 -----ELFQIMEKY----VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
                E F+++++      +P+  +YN LI G   + + E A+++ + +V     P +VT
Sbjct: 128 RGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVT 187

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           +  ++ GLC E R+D+ALK+ E +++     P    + +L++GLC  G +  A  + +EM
Sbjct: 188 YTIIVDGLCKEGRLDKALKMVEGMLK-RGCTPSVITYTALMEGLCRTGRVDEAHHIFKEM 246

Query: 250 VRDKIEMDA--------------------------------GIYSSLISALFKAGRKNEF 277
           V      DA                                 +Y++L+    K GR +E 
Sbjct: 247 VSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEI 306

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           P + ++M  RGC PN  TYN ++ G CK    + AF  L+ M   GC  + +SYN+I+ G
Sbjct: 307 PNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDG 366

Query: 338 LCKDGK 343
           L K  K
Sbjct: 367 LFKASK 372



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 131/270 (48%), Gaps = 2/270 (0%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           ++ ++ P    +  +I    +A   ++A +M  EM    V      FN++++     GK 
Sbjct: 2   NERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKF 61

Query: 135 DRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           +R   L  +M E+   P  C+YN LI G    + ++ A  + DE V     P +VT+  L
Sbjct: 62  ERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSIL 121

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
             GLC   R+DEA +L ++ M      P+   + +LI GLC   +   A  + E +V   
Sbjct: 122 ADGLCKRGRIDEAFELVKE-MSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSG 180

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
              D   Y+ ++  L K GR ++   +++ M +RGC P+ +TY AL+ G C+    + A 
Sbjct: 181 FVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAH 240

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            I  EM  K C A+ ++Y  ++ G CK  +
Sbjct: 241 HIFKEMVSKDCTADALAYVSLVNGYCKSSR 270



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 146/294 (49%), Gaps = 6/294 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ Y+ +I  L +A   ++  ++L  L   +  VP  + +  ++    +   L++AL+M
Sbjct: 149 NLVTYNTLIDGLCKASKTEKAYELLETLVS-SGFVPDVVTYTIIVDGLCKEGRLDKALKM 207

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            + M       +V  +  L+      G++D    +F +++ K  + DA +Y  L++G   
Sbjct: 208 VEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCK 267

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S R ++A KV D +   R  P +  +  L+ G C E R+DE   + ED M      P+ +
Sbjct: 268 SSRTKEAQKVVDGI---RGTPYIDVYNALMDGYCKEGRLDEIPNVFED-MACRGCVPNIK 323

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  ++ GLC  G++  A    E M       D   Y+ +I  LFKA +  E   +L +M
Sbjct: 324 TYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQM 383

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            + G  P++VTYN L++ FCKEE F+ A  IL  M   G   + ++YN ++ GL
Sbjct: 384 IQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGL 437



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 121/236 (51%), Gaps = 2/236 (0%)

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNILIHGCVVSRR 167
           M+   V   V  +N L++      K D+  E L +++++ V+PD  ++N ++ G   + +
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
            E A  +   M +R  +P+  T+ TLI GLC +  VD A  L ++ +    V PD   ++
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFV-PDVVTYS 119

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            L  GLC  G +  A  + +EM  +    +   Y++LI  L KA +  +   +L+ +   
Sbjct: 120 ILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSS 179

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G  P+ VTY  ++ G CKE   + A  +++ M  +GC  + I+Y  ++ GLC+ G+
Sbjct: 180 GFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGR 235



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 146/301 (48%), Gaps = 8/301 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y++II  L +A    E +Q+L Q+     I P  + +  ++  + +    + A+ +
Sbjct: 356 DVVSYNIIIDGLFKASKPKEARQVLDQMIQ-AGIPPDAVTYNTLMAQFCKEERFDDAVGI 414

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACS-YNILIHGCV 163
              M    V      +NTL++      +L    EL  +++       AC+ YN +I    
Sbjct: 415 LKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLC 474

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
               L+ A  + D M    ++   VT+   I  LC E R+DEA  L  ++    +   D 
Sbjct: 475 KEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM----DTLRDE 530

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDK-IEMDAGIYSSLISALFKAGRKNEFPAILK 282
             + ++I GLC   +L  A  +  EMV  K + + +  ++ LI A  K  R +E   +L+
Sbjct: 531 VSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLE 590

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            M +RGC P+ +TYN +I+  CK +  + A+ + DEM  +G  A+ +SY V++ GLC  G
Sbjct: 591 LMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQG 650

Query: 343 K 343
           +
Sbjct: 651 R 651



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 120/276 (43%), Gaps = 34/276 (12%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           ++ A    + M S      V  +N +++      K    +++  Q+++  + PDA +YN 
Sbjct: 338 VDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNT 397

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L+       R +DA  +   M+K  + P  VT+ TLI GL    R+ +A +L  +++R  
Sbjct: 398 LMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNG 457

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            V      + ++I  LC  G L  AL + + M    +E +   Y+  I  L K GR +E 
Sbjct: 458 CVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEA 517

Query: 278 PAILKEMKE---------------------------------RGCKPNSVTYNALISGFC 304
            ++L EM                                   +G    S T+N LI  F 
Sbjct: 518 SSLLSEMDTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFT 577

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           K +  + A T+L+ M  +GC  + I+YN+++  LCK
Sbjct: 578 KTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCK 613



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 114/272 (41%), Gaps = 35/272 (12%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I+ L +     +  +++H++  +  +V     +  +I    +   L++AL + D M
Sbjct: 430 YNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHM 489

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME------------------------ 145
           +   V+     +N  ++     G+LD    L   M+                        
Sbjct: 490 TGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAEQLDRA 549

Query: 146 ----------KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
                     K +   + ++N+LI     ++RL++A  + + MV+R   P+++T+  +I 
Sbjct: 550 SKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVIT 609

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
            LC   +VD+A +L ++ M V  +      +  LI GLC  G    AL V EEM     E
Sbjct: 610 CLCKLDKVDKAWELFDE-MAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCE 668

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +D      L  AL   GR  E   +L+ M  +
Sbjct: 669 IDDLKCRKLYLALRGQGRGEEAAELLRRMTTK 700


>gi|255660950|gb|ACU25644.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
          Length = 481

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 178/381 (46%), Gaps = 57/381 (14%)

Query: 18  PKLALQLFKNPNPNPNDTEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQ 68
           P    +L  N       TE H L+ FR+    NL  +D      II  LGRA   +  + 
Sbjct: 8   PSFDHELVYNVLHGAKKTE-HALQFFRWVERSNLFQHDRETHLKIIEILGRASKLNHARC 66

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK--------- 119
           IL  +     +   E ++  +I  YG+  +++ ++++F +M    V+ T+K         
Sbjct: 67  ILLDMPKKG-LEWDEDLWVLMIDSYGKKGIVQESVKLFQKMEELGVERTIKSYDALFKVI 125

Query: 120 -----------FFNTLLNPKLT---------------CGKLDRMKELFQIME-KYVSPDA 152
                      +FN +LN  +                 GK++     F+ M+ + ++PD 
Sbjct: 126 LRRGRFMMAKRYFNKMLNEGIEPTRHTFNVMIWGFFLSGKVETANXFFEDMKSRDITPDV 185

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN LI+G    +++E+A + F EM  R ++PT++T+ TLI G     RVD+AL L E+
Sbjct: 186 ITYNTLINGYYRVKKMEEAERYFVEMKGRNIEPTVITYTTLIKGYVSVDRVDDALSLMEE 245

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE-MDAGIYSSLISALFKA 271
            M+ + +KP+   +++L+ GLC   ++S A  + +EMV   I   D  I+  LIS   KA
Sbjct: 246 -MKGFGIKPNAITYSTLLPGLCNAEKMSEAQSILKEMVDKYIAPTDNSIFLKLISGQCKA 304

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC------- 324
           G  +    +LK M        +  Y  LI  +CK E ++ A  +LD++ +K         
Sbjct: 305 GNLDAAADVLKAMIRLSVPTEAGHYGVLIENYCKAEKYDKAVNLLDKLIEKDIILRPQST 364

Query: 325 -KANPISYNVILGGLCKDGKC 344
               P +YN ++  LC +G+ 
Sbjct: 365 LHMEPSAYNPMIEYLCDNGQT 385



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 127/263 (48%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A   F++M S ++   V  +NTL+N      K++  +  F  M+ + 
Sbjct: 157 IWGFFLSGKV-ETANXFFEDMKSRDITPDVITYNTLINGYYRVKKMEEAERYFVEMKGRN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   R++DA  + +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IEPTVITYTTLIKGYVSVDRVDDALSLMEEMKGFGIKPNAITYSTLLPGLCNAEKMSEAQ 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + ++++  Y    D  +F  LI G C  G L  A  V + M+R  +  +AG Y  LI  
Sbjct: 276 SILKEMVDKYIAPTDNSIFLKLISGQCKAGNLDAAADVLKAMIRLSVPTEAGHYGVLIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             KA + ++   +L ++ E+    +P S        YN +I   C       A T++ ++
Sbjct: 336 YCKAEKYDKAVNLLDKLIEKDIILRPQSTLHMEPSAYNPMIEYLCDNGQTAKAETLVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G +  P + N ++ G  ++G
Sbjct: 396 MKLGVQ-EPTALNTLIRGHSQEG 417



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 126/289 (43%), Gaps = 45/289 (15%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  I +  +I  Y R + +E A + F EM   N++ TV  + TL+   ++  ++D   
Sbjct: 181 ITPDVITYNTLINGYYRVKKMEEAERYFVEMKGRNIEPTVITYTTLIKGYVSVDRVDDAL 240

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT-FGTLIYG 196
            L + M+ + + P+A +Y+ L+ G   + ++ +A  +  EMV + + PT  + F  LI G
Sbjct: 241 SLMEEMKGFGIKPNAITYSTLLPGLCNAEKMSEAQSILKEMVDKYIAPTDNSIFLKLISG 300

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI-- 254
            C    +D A  + + ++R+ +V  +   +  LI+  C   +   A+ + ++++   I  
Sbjct: 301 QCKAGNLDAAADVLKAMIRL-SVPTEAGHYGVLIENYCKAEKYDKAVNLLDKLIEKDIIL 359

Query: 255 ------EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK-----------------P 291
                  M+   Y+ +I  L   G+  +   +++++ + G +                 P
Sbjct: 360 RPQSTLHMEPSAYNPMIEYLCDNGQTAKAETLVRQLMKLGVQEPTALNTLIRGHSQEGSP 419

Query: 292 NSV-----------------TYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +S                   Y++L+  + K+ +   A   LD M + G
Sbjct: 420 DSAFELLKIMLRRKVDSEKSAYDSLVQSYLKKNEPADAKAALDSMIENG 468


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 139/273 (50%), Gaps = 39/273 (14%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS--AMLASGVQPDVYTYSVL 218

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE------- 211
           I+G     +++DA K+FDEM+ + L P  VTF TLI G C   RVD A+++ +       
Sbjct: 219 INGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSL 278

Query: 212 ---------------------------DIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
                                      D M +  ++PD   + +LI G C  G+L  A  
Sbjct: 279 LPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFE 338

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
            ++ M+++ I +D   Y++LIS L + GR  +   +L+EM   G KP++ TY  +I+ FC
Sbjct: 339 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFC 398

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           K+ D      +L EM   G   + ++YNV++ G
Sbjct: 399 KKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 130/239 (54%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   SYN L++G + 
Sbjct: 130 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++ +++   M+   +QP + T+  LI GLC E ++D+A KL ++ M V  + P+G 
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDE-MLVKALVPNGV 248

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEM 308

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G +P+ +TY  LI G CKE D + AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 309 SMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGR 367



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G      ++   + + G +P+ V+YN L+
Sbjct: 125 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 185 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENK 227


>gi|238480176|ref|NP_001154199.1| uncharacterized protein [Arabidopsis thaliana]
 gi|223635643|sp|Q8LDU5.2|PP298_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01400, mitochondrial; Flags: Precursor
 gi|332656621|gb|AEE82021.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 466

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 167/342 (48%), Gaps = 13/342 (3%)

Query: 4   SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMF 63
           S  R+  L   Q DP LA ++F   +  PN         FR++   + ++I KLGR + F
Sbjct: 50  SPTRVQKLIASQSDPLLAKEIFDYASQQPN---------FRHSRSSHLILILKLGRGRYF 100

Query: 64  DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT 123
           + +  +L + +     +  EI F  +I  Y  A+L E+ L  F +M  FN     K  N 
Sbjct: 101 NLIDDVLAKHRSSGYPLTGEI-FTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNR 159

Query: 124 LLNPKLTC-GKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
           +L+  ++  G L +  ELF+    + V P+  SYN+L+    ++  L  A+++F +M++R
Sbjct: 160 ILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLER 219

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
            + P + ++  LI G C + +V+ A++L +D++    V PD   + +L+  LC   +L  
Sbjct: 220 DVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFV-PDRLSYTTLLNSLCRKTQLRE 278

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           A  +   M       D   Y+++I    +  R  +   +L +M   GC PNSV+Y  LI 
Sbjct: 279 AYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIG 338

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G C +  F+     L+EM  KG   +    N ++ G C  GK
Sbjct: 339 GLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGK 380



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 2/213 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNI 157
           L  A Q+F +M   +V   V  +  L+      G+++   EL   ++ K   PD  SY  
Sbjct: 206 LSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTT 265

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L++      +L +A+K+   M  +   P LV + T+I G C E R  +A K+ +D++   
Sbjct: 266 LLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLS-N 324

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
              P+   + +LI GLC  G         EEM+         + + L+      G+  E 
Sbjct: 325 GCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEA 384

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
             +++ + + G   +S T+  +I   C E++ E
Sbjct: 385 CDVVEVVMKNGETLHSDTWEMVIPLICNEDESE 417


>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
 gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 165/331 (49%), Gaps = 11/331 (3%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L R ++D + A  +F       +   A     FR++   + ++I+KL  A  F   +++L
Sbjct: 21  LLRAERDLRKAKIIF-------DSASAEYSNGFRHDHTTFGVMISKLVSANEFRPAEEML 73

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130
           +++K +   + +EI F ++   YGR  +   A+++F +M+ F  + T K + ++    + 
Sbjct: 74  NRMKEEKCRITEEI-FLSICRGYGRVHMPLDAIRVFHKMNDFGCKPTDKSYISVFAILVE 132

Query: 131 CGKLDRMKELFQIM-EKYVSPDACSYNILIHG-CVVSRRLEDAWKVFDEMVKRRLQPTLV 188
             +L      ++ M E  V     S N+LI   C  S  ++ A+++F EM KR   P   
Sbjct: 133 ENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSY 192

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           T+GTLI GLC   +  EA +L ++ M      P    ++ L+ GLC  G +  A+G+ ++
Sbjct: 193 TYGTLINGLCKLGKTFEAKELFKE-MDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDK 251

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M +  IE +   YSSL+  L K G   E   +L+ M  +  KPN VTY+ LI+G CKE  
Sbjct: 252 MKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCKEGK 311

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLC 339
              A   LD M  +G K +   Y  I+ G C
Sbjct: 312 LAEAVETLDRMKLQGLKPDAGLYGKIINGFC 342



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 126/252 (50%), Gaps = 9/252 (3%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           ++ A ++F EM           + TL+N     GK    KELF+ M+ K  SP   +Y+ 
Sbjct: 172 IDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSC 231

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L+HG   +  +++A  +FD+M K+ ++P + T+ +L+ GLC      EA++L E ++R  
Sbjct: 232 LMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKR 291

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           + KP+   +++LI GLC  G+L+ A+   + M    ++ DAG+Y  +I+      +  E 
Sbjct: 292 H-KPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEA 350

Query: 278 PAILKEMKERGCKPNSVTY-------NALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
              L EM      PN VT+       N ++ G C   +   +F +   M  +G   +  +
Sbjct: 351 ATYLDEMVLGQISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGT 410

Query: 331 YNVILGGLCKDG 342
           ++ ++   CK G
Sbjct: 411 FDSLVKCFCKKG 422



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 124/245 (50%), Gaps = 9/245 (3%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIH 160
           A ++F EM +     +V  ++ L++     G +D    LF  M+K  + P+  +Y+ L+ 
Sbjct: 210 AKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMD 269

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G   +    +A ++ + MV++R +P +VT+ TLI GLC E ++ EA++   D M++  +K
Sbjct: 270 GLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETL-DRMKLQGLK 328

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS-------SLISALFKAGR 273
           PD  ++  +I G C + +   A    +EMV  +I  +   +S        ++  L   G 
Sbjct: 329 PDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQISPNRVTWSLHVKLNNMVVQGLCTNGN 388

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            N    +   M+ RG   ++ T+++L+  FCK+ D   A  I DEM   GC  +   ++ 
Sbjct: 389 LNRSFQLYIGMRTRGISIDAGTFDSLVKCFCKKGDLHKAARIFDEMVLDGCVPDHGIWSA 448

Query: 334 ILGGL 338
           ++GG 
Sbjct: 449 VVGGF 453


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 155/299 (51%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y  +I  L +    D    +L++++   +I    +I+  VI    + R ++ AL +
Sbjct: 204 DLVTYGAVINGLCKRGEPDLALNLLNKMEKG-KIEADVVIYSTVIDSLCKYRHVDDALNL 262

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           F EM +  ++  V  +++L++     G+  D  + L  ++E+ ++P+  ++N LI     
Sbjct: 263 FTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAK 322

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L +A K+FDEM++R + P +VT+ +LI G C+  R+DEA ++   +M   +  PD  
Sbjct: 323 EGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFT-LMVSKDCLPDVV 381

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G C   ++   + +  +M R  +  +   Y++LI   F+A   +    + K+M
Sbjct: 382 TYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQM 441

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  PN +TYN L+ G CK    E A  + + +     + +  +YN++  G+CK GK
Sbjct: 442 VSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGK 500



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 156/303 (51%), Gaps = 3/303 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  R ++  Y  +I+ L     + +  ++L  +  + +I P  + F ++I  + +   L 
Sbjct: 269 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDML-ERKINPNVVTFNSLIDAFAKEGKLI 327

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            A ++FDEM   ++   +  +N+L+N      +LD  +++F +M  K   PD  +YN LI
Sbjct: 328 EAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLI 387

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +G   ++++ D  ++F +M +R L    VT+ TLI+G       D A  + +  M    V
Sbjct: 388 NGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQ-MVSDGV 446

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   + +L+ GLC  G+L  A+ V E + + K+E D   Y+ +   + KAG+  +   
Sbjct: 447 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWD 506

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +   +  +G KP+ + YN +ISGFCK+   E A+T+  +M + G   +  +YN ++    
Sbjct: 507 LFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHL 566

Query: 340 KDG 342
           +DG
Sbjct: 567 RDG 569



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 139/300 (46%), Gaps = 3/300 (1%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +NL  Y+++I  L R         IL ++       P  +   +++  +     +  A+ 
Sbjct: 98  HNLYTYNIMINCLCRRSQLSFALAILGKMMK-LGYGPSIVTLNSLLNGFCHGNRISEAVA 156

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
           + D+M     Q     F TL++      K      L + M  K   PD  +Y  +I+G  
Sbjct: 157 LVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLC 216

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
                + A  + ++M K +++  +V + T+I  LC    VD+AL L  + M    ++PD 
Sbjct: 217 KRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTE-MDNKGIRPDV 275

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             ++SLI  LC  G  S A  +  +M+  KI  +   ++SLI A  K G+  E   +  E
Sbjct: 276 FTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDE 335

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M +R   PN VTYN+LI+GFC  +  + A  I   M  K C  + ++YN ++ G CK  K
Sbjct: 336 MIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKK 395



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 128/284 (45%), Gaps = 10/284 (3%)

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
           + D+M ++ +Q        P  + F  ++    +      A+ + + M     Q  +  +
Sbjct: 157 LVDQMVEMGYQ--------PDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTY 208

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
             ++N     G+ D    L   MEK  +  D   Y+ +I      R ++DA  +F EM  
Sbjct: 209 GAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDN 268

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           + ++P + T+ +LI  LC   R  +A +L  D++    + P+   F SLI      G+L 
Sbjct: 269 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLE-RKINPNVVTFNSLIDAFAKEGKLI 327

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  + +EM++  I+ +   Y+SLI+      R +E   I   M  + C P+ VTYN LI
Sbjct: 328 EAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLI 387

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
           +GFCK +       +  +M  +G   N ++Y  ++ G  +   C
Sbjct: 388 NGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDC 431



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 128/280 (45%), Gaps = 35/280 (12%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           L+ A+ +F EM       ++  F+ LL+      K D +    + ME   VS +  +YNI
Sbjct: 46  LDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNI 105

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI---- 213
           +I+      +L  A  +  +M+K    P++VT  +L+ G C   R+ EA+ L + +    
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165

Query: 214 ------------------------------MRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
                                         M V   +PD   + ++I GLC  GE  LAL
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 225

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            +  +M + KIE D  IYS++I +L K    ++   +  EM  +G +P+  TY++LIS  
Sbjct: 226 NLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCL 285

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C    +  A  +L +M ++    N +++N ++    K+GK
Sbjct: 286 CNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGK 325



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 41/190 (21%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           S N L+H      +L++A  +F EMVK R  P++V F  L+  +    + D  +   E  
Sbjct: 37  SRNALLH-----LKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEK- 90

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M +  V  +   +  +I  LC   +LS AL                              
Sbjct: 91  MEILGVSHNLYTYNIMINCLCRRSQLSFAL------------------------------ 120

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
                AIL +M + G  P+ VT N+L++GFC       A  ++D+M + G + + +++  
Sbjct: 121 -----AILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTT 175

Query: 334 ILGGLCKDGK 343
           ++ GL +  K
Sbjct: 176 LVHGLFQHNK 185


>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
 gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 129/241 (53%), Gaps = 2/241 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIH 160
           AL  + EM    +      FN +L+     GKL++  E+ + ME   ++P+  SYN LI 
Sbjct: 183 ALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIA 242

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G      L  A K+ + M K  L+P +VTF +LI+G C E ++ EA +   + M+V NV 
Sbjct: 243 GHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSE-MKVMNVT 301

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   + +LI G   VG  ++A  V EEM+R+ ++ D   Y++LI  L K G+  +   +
Sbjct: 302 PNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFL 361

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +KE+ +    PN+ TY+ALISG C  ++ + AF +   M   GC  N  ++ ++     K
Sbjct: 362 VKELDKENLVPNASTYSALISGQCARKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSAFVK 421

Query: 341 D 341
           +
Sbjct: 422 N 422



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/269 (33%), Positives = 135/269 (50%), Gaps = 6/269 (2%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           RI P    F  V+    ++  LE+A+++  EM S  +   V  +NTL+      G L   
Sbjct: 194 RISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIA 253

Query: 138 KELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
            +L  +M K  + P+  ++N LIHG     +L +A + F EM    + P  VT+ TLI G
Sbjct: 254 TKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLING 313

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
                  + A K+ E++MR   VK D   + +LI GLC  G+   A  + +E+ ++ +  
Sbjct: 314 YGQVGNSNMAGKVYEEMMR-NGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVP 372

Query: 257 DAGIYSSLISALFKAGRKNEFPA--ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           +A  YS+LIS   +  RKN   A  + K M   GC PN  T+  L S F K EDFE AF 
Sbjct: 373 NASTYSALISG--QCARKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSAFVKNEDFEGAFN 430

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +L +M  +   ++  +   I  GLC+ GK
Sbjct: 431 VLMDMFARSMASDSNTLLEIYDGLCQCGK 459



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 152/334 (45%), Gaps = 29/334 (8%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L ++QKD  L+L+ F +            L P    L  + +I+  L +   F   Q IL
Sbjct: 49  LLKIQKDHVLSLEFFNS---------LKTLNPISLTLETHSIILHILTKKSKFKSAQSIL 99

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130
             L     I     +F  ++  Y   R+ + + ++FD +      M              
Sbjct: 100 RTLLASRSIDLPGKLFDTLLFSY---RMCDSSPRVFDSLFKTYAHM-------------- 142

Query: 131 CGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
             K     ++F  M+ Y   P   S N  +   +   R++ A   + EM + R+ P   T
Sbjct: 143 -NKFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFYREMRRCRISPNSYT 201

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           F  ++  LC   ++++A+++  + M    + P+   + +LI G C  G LS+A  +K  M
Sbjct: 202 FNLVLSALCKSGKLEKAVEVLRE-MESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLM 260

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
            ++ +E +   ++SLI    K G+ +E      EMK     PN+VTYN LI+G+ +  + 
Sbjct: 261 GKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNS 320

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             A  + +EM   G KA+ ++YN ++ GLCK+GK
Sbjct: 321 NMAGKVYEEMMRNGVKADILTYNALILGLCKEGK 354


>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
 gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
          Length = 613

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 141/291 (48%), Gaps = 2/291 (0%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           YDL++  LG+ K FD M  +++Q+     ++    +   +    G +R  E A+  F +M
Sbjct: 228 YDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTE-AIDAFHKM 286

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
             F V    K  N LL+       + R + +FQ +   + PD  S+N L+HG   +R L+
Sbjct: 287 DRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLK 346

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           +A    +EM +    P++VT+ +L+   C+E        L ++ MR     P+   +  L
Sbjct: 347 EALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDE-MRKRRCPPNVVTYTIL 405

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           +  L   G    AL   +++  D +  DA  Y+SLI  L +AGR  +  ++++EM+  G 
Sbjct: 406 MHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGI 465

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            PN  T+N LIS  C     E A  +L +M ++ C  +  +Y  +L   CK
Sbjct: 466 APNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCK 516



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 114/255 (44%), Gaps = 9/255 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++ ++    +A+M  E    + ++K      P  + + +++  Y   +  +    + DEM
Sbjct: 332 FNTLVHGWCKARMLKEALDTMEEMKQHG-FSPSVVTYTSLVEAYCMEKDFQTVYALLDEM 390

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----VSPDACSYNILIHGCVVS 165
                   V  +  L++     GK  R +E     +K     V+PDA  YN LI+    +
Sbjct: 391 RKRRCPPNVVTYTILMH---ALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRA 447

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            RLEDA+ V +EM    + P + TF TLI   C   + + ALKL    M   +  PD + 
Sbjct: 448 GRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVK-MEEQSCNPDIKT 506

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           +  L+K  C    + + L +   M R  I  D   Y+ L+S L + G+  +    L+EM 
Sbjct: 507 YTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMV 566

Query: 286 ERGCKPNSVTYNALI 300
            +G  P   T++ ++
Sbjct: 567 SKGFAPKQETFDLVM 581



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 97/192 (50%), Gaps = 2/192 (1%)

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
           A SY++++      ++ +  W + ++MV+     +L+T   ++  L    R  EA+    
Sbjct: 225 ADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFH 284

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            + R + V  D +    L+  LC    +  A GV +E+ R  I  D   +++L+    KA
Sbjct: 285 KMDR-FGVVKDTKAMNVLLDTLCKERSVKRARGVFQEL-RGTIPPDENSFNTLVHGWCKA 342

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
               E    ++EMK+ G  P+ VTY +L+  +C E+DF+  + +LDEM  + C  N ++Y
Sbjct: 343 RMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTY 402

Query: 332 NVILGGLCKDGK 343
            +++  L K G+
Sbjct: 403 TILMHALGKAGR 414


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 134/272 (49%), Gaps = 18/272 (6%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKY 147
           ++  + +A L+E+A + F+EM        V  +  L++  L   K+    ELF+ M  + 
Sbjct: 524 MVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG 583

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR----------------LQPTLVTFG 191
             P+  +Y+ LI G   + ++E A ++F+ M   +                 +P +VT+G
Sbjct: 584 CLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYG 643

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
            L+ G C   RV+EA KL  D M +   +P+  V+ +LI GLC VG+L  A  VK EM  
Sbjct: 644 ALLDGFCKSHRVEEARKLL-DAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSE 702

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
                    YSSLI   FK  R++    +L +M E  C PN V Y  +I G CK    + 
Sbjct: 703 HGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDE 762

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           A+ ++  M +KGC+ N ++Y  ++ G    GK
Sbjct: 763 AYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGK 794



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 141/309 (45%), Gaps = 11/309 (3%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  + + Y  +I+ L  A +F+E    L++++  T  +P  + +  ++      + L R 
Sbjct: 298 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRA-TSCLPNVVTYSTLLCGCLNKKQLGRC 356

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHG 161
            ++ + M       + K FN+L++   T G      +L + M K    P    YNILI G
Sbjct: 357 KRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILI-G 415

Query: 162 CVVSRR-------LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
            +   +       L+ A K + EM+   +    +   +    LC   + ++A  +  +++
Sbjct: 416 SICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMI 475

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
                 PD   ++ ++  LC   ++ LA  + EEM R  +  D   Y+ ++ +  KAG  
Sbjct: 476 G-QGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLI 534

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            +      EM+E GC PN VTY ALI  + K +    A  + + M  +GC  N ++Y+ +
Sbjct: 535 EQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSAL 594

Query: 335 LGGLCKDGK 343
           + G CK G+
Sbjct: 595 IDGHCKAGQ 603



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 91/224 (40%), Gaps = 5/224 (2%)

Query: 119 KFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           +F N L+      G     ++EL ++ +    P   +YN LI   + + RL+ A  +  E
Sbjct: 201 EFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHRE 260

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M    L+    T     Y LC   +  EAL L E      N  PD   +  LI GLC   
Sbjct: 261 MSLANLRMDGFTLRCFAYSLCKVGKWREALTLVE----TENFVPDTVFYTKLISGLCEAS 316

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
               A+     M       +   YS+L+       +      +L  M   GC P+   +N
Sbjct: 317 LFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFN 376

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           +L+  +C   D   A+ +L +M   G     + YN+++G +C D
Sbjct: 377 SLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGD 420



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 4/161 (2%)

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
           R +P+  T+  LI       R+D A  +  + M + N++ DG         LC VG+   
Sbjct: 230 RFRPSRSTYNCLIQAFLKADRLDSASLIHRE-MSLANLRMDGFTLRCFAYSLCKVGKWRE 288

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           AL + E    +    D   Y+ LIS L +A    E    L  M+   C PN VTY+ L+ 
Sbjct: 289 ALTLVET---ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLC 345

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           G   ++       +L+ M  +GC  +P  +N ++   C  G
Sbjct: 346 GCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSG 386



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 101/233 (43%), Gaps = 5/233 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L +    DE  +++ Q+  +    P  + +  +I  +G    +E  L++
Sbjct: 743 NVVIYTEMIDGLCKVGKTDEAYKLM-QMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 801

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILIHGCVV 164
            + M S  V      +  L++     G LD    L + M++   P     Y  +I G   
Sbjct: 802 LERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEG--F 859

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD-G 223
           ++   ++  + DE+ +    P L  +  LI  L    R++ AL+L E++        D  
Sbjct: 860 NKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYS 919

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             + SLI+ LC   ++  A  +  EM +  +  +   + SLI  LF+  + +E
Sbjct: 920 STYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISE 972



 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 76/167 (45%), Gaps = 6/167 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y ++I    +    D    +L ++K  T        +  VI  + +  +   +L +
Sbjct: 813 NYVTYRVLIDHCCKNGALDVAHNLLEEMKQ-THWPTHTAGYRKVIEGFNKEFI--ESLGL 869

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNILIHGC 162
            DE+   +    +  +  L++  +   +L+   R+ E        +   + +YN LI   
Sbjct: 870 LDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESL 929

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
            ++ ++E A+++F EM K+ + P + +F +LI GL    ++ EAL L
Sbjct: 930 CLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLL 976


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 142/258 (55%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++  Y R   L+   ++   M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANEL 234

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K + P++ ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 235 FDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 294

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++   +D  
Sbjct: 295 KGDLKQAHHLIDE-MSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDV 353

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           +Y++LIS L + G+  +   +L+EM   G KP++ TY  +I+ FCK+ D      +L EM
Sbjct: 354 VYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEM 413

Query: 320 GDKGCKANPISYNVILGG 337
              G   + ++YNV++ G
Sbjct: 414 QRDGHVPSVVTYNVLMNG 431



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 128/239 (53%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   SYN L++G + 
Sbjct: 130 YEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++ +++   M+   +QP + T+  LI GLC E ++D+A +L ++ M V  + P+  
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDE-MLVKGLVPNSV 248

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 308

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G KP+ +TY  LI G CK+ D + AF     M  +  + + + Y  ++ GLC++G+
Sbjct: 309 SMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQ 367



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 131/244 (53%), Gaps = 6/244 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS--AMLASGVQPDVYTYSVL 218

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G     +++DA ++FDEM+ + L P  VTF TLI G C   RVD A+++ + ++   +
Sbjct: 219 INGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QS 277

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   + +LI GLC  G+L  A  + +EM    ++ D   Y++LI    K G  +   
Sbjct: 278 LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAF 337

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
              K M +   + + V Y ALISG C+E     A  +L EM   G K +  +Y +I+   
Sbjct: 338 EHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEF 397

Query: 339 CKDG 342
           CK G
Sbjct: 398 CKKG 401



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G      ++   + + G +P+ V+YN L+
Sbjct: 125 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 185 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 227


>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
          Length = 1874

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 140/291 (48%), Gaps = 2/291 (0%)

Query: 50   YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
            YDL++  LG+ K FD M  +++Q+     ++    +   +    G +R  E A+  F +M
Sbjct: 1489 YDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTE-AIDAFHKM 1547

Query: 110  SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
              F V    K  N LL+       + R + +FQ +   + PD  S+N L+HG   +R L+
Sbjct: 1548 DRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLK 1607

Query: 170  DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
            +A    +EM +    P++VT+ +L+   C+E        L  D MR     P+   +  L
Sbjct: 1608 EALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALL-DEMRKRRCPPNVVTYTIL 1666

Query: 230  IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
            +  L   G    AL   +++  D +  DA  Y+SLI  L +AGR  +  ++++EM+  G 
Sbjct: 1667 MHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGI 1726

Query: 290  KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             PN  T+N LIS  C     E A  +L +M ++ C  +  +Y  +L   CK
Sbjct: 1727 APNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCK 1777



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 114/255 (44%), Gaps = 9/255 (3%)

Query: 50   YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
            ++ ++    +A+M  E    + ++K      P  + + +++  Y   +  +    + DEM
Sbjct: 1593 FNTLVHGWCKARMLKEALDTMEEMKQHG-FSPSVVTYTSLVEAYCMEKDFQTVYALLDEM 1651

Query: 110  SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----VSPDACSYNILIHGCVVS 165
                    V  +  L++     GK  R +E     +K     V+PDA  YN LI+    +
Sbjct: 1652 RKRRCPPNVVTYTILMH---ALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRA 1708

Query: 166  RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             RLEDA+ V +EM    + P + TF TLI   C   + + ALKL    M   +  PD + 
Sbjct: 1709 GRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVK-MEEQSCNPDIKT 1767

Query: 226  FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
            +  L+K  C    + + L +   M R  I  D   Y+ L+S L + G+  +    L+EM 
Sbjct: 1768 YTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMV 1827

Query: 286  ERGCKPNSVTYNALI 300
             +G  P   T++ ++
Sbjct: 1828 SKGFAPKQETFDLVM 1842



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 97/192 (50%), Gaps = 2/192 (1%)

Query: 152  ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
            A SY++++      ++ +  W + ++MV+     +L+T   ++  L    R  EA+    
Sbjct: 1486 ADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFH 1545

Query: 212  DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
             + R + V  D +    L+  LC    +  A GV +E+ R  I  D   +++L+    KA
Sbjct: 1546 KMDR-FGVVKDTKAMNVLLDTLCKERSVKRARGVFQEL-RGTIPPDENSFNTLVHGWCKA 1603

Query: 272  GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
                E    ++EMK+ G  P+ VTY +L+  +C E+DF+  + +LDEM  + C  N ++Y
Sbjct: 1604 RMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTY 1663

Query: 332  NVILGGLCKDGK 343
             +++  L K G+
Sbjct: 1664 TILMHALGKAGR 1675


>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1833

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 140/291 (48%), Gaps = 2/291 (0%)

Query: 50   YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
            YDL++  LG+ K FD M  +++Q+     ++    +   +    G +R  E A+  F +M
Sbjct: 1448 YDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTE-AIDAFHKM 1506

Query: 110  SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
              F V    K  N LL+       + R + +FQ +   + PD  S+N L+HG   +R L+
Sbjct: 1507 DRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLK 1566

Query: 170  DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
            +A    +EM +    P++VT+ +L+   C+E        L  D MR     P+   +  L
Sbjct: 1567 EALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALL-DEMRKRRCPPNVVTYTIL 1625

Query: 230  IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
            +  L   G    AL   +++  D +  DA  Y+SLI  L +AGR  +  ++++EM+  G 
Sbjct: 1626 MHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGI 1685

Query: 290  KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             PN  T+N LIS  C     E A  +L +M ++ C  +  +Y  +L   CK
Sbjct: 1686 APNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCK 1736



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 114/255 (44%), Gaps = 9/255 (3%)

Query: 50   YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
            ++ ++    +A+M  E    + ++K      P  + + +++  Y   +  +    + DEM
Sbjct: 1552 FNTLVHGWCKARMLKEALDTMEEMKQHG-FSPSVVTYTSLVEAYCMEKDFQTVYALLDEM 1610

Query: 110  SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----VSPDACSYNILIHGCVVS 165
                    V  +  L++     GK  R +E     +K     V+PDA  YN LI+    +
Sbjct: 1611 RKRRCPPNVVTYTILMH---ALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRA 1667

Query: 166  RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             RLEDA+ V +EM    + P + TF TLI   C   + + ALKL    M   +  PD + 
Sbjct: 1668 GRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVK-MEEQSCNPDIKT 1726

Query: 226  FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
            +  L+K  C    + + L +   M R  I  D   Y+ L+S L + G+  +    L+EM 
Sbjct: 1727 YTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMV 1786

Query: 286  ERGCKPNSVTYNALI 300
             +G  P   T++ ++
Sbjct: 1787 SKGFAPKQETFDLVM 1801



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 97/192 (50%), Gaps = 2/192 (1%)

Query: 152  ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
            A SY++++      ++ +  W + ++MV+     +L+T   ++  L    R  EA+    
Sbjct: 1445 ADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFH 1504

Query: 212  DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
             + R + V  D +    L+  LC    +  A GV +E+ R  I  D   +++L+    KA
Sbjct: 1505 KMDR-FGVVKDTKAMNVLLDTLCKERSVKRARGVFQEL-RGTIPPDENSFNTLVHGWCKA 1562

Query: 272  GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
                E    ++EMK+ G  P+ VTY +L+  +C E+DF+  + +LDEM  + C  N ++Y
Sbjct: 1563 RMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTY 1622

Query: 332  NVILGGLCKDGK 343
             +++  L K G+
Sbjct: 1623 TILMHALGKAGR 1634


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 149/298 (50%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y++II  + +AK+ ++   +  Q+    RI P    +  +I  +     L  A+ +
Sbjct: 200 NAVMYNMIIDNMCKAKLVNDAFDLYSQMV-AKRICPDVFTYNALISGFSAVSKLNYAIDL 258

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           F++M   N+   V  FN L++     GK++  K +  IM K  + PD  +YN L+ G   
Sbjct: 259 FNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCS 318

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             ++  A  +FD M    +   +  + T++ G C    VDEA+ L E+ MR   + P+  
Sbjct: 319 INKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEE-MRCRKIIPNVV 377

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++SLI GLC +G +  AL + +EM       +   YSS++ AL K    ++  A+L  +
Sbjct: 378 TYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNL 437

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           K++G +P+  TY  LI G C+    E A  + +++  KG   +  +Y V++ G C  G
Sbjct: 438 KDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKG 495



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 158/303 (52%), Gaps = 5/303 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV-PKEIIFCNVIGFYGRARLLER 101
           F  + + Y  +I  L +        Q+L ++  D ++V P  +++  +I    +A+L+  
Sbjct: 162 FHLDQVSYGTLINGLCKVGRITAALQLLKRV--DGKLVQPNAVMYNMIIDNMCKAKLVND 219

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIH 160
           A  ++ +M +  +   V  +N L++      KL+   +LF  M+K  ++P+  ++NIL+ 
Sbjct: 220 AFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVD 279

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     ++ DA  V   M+K  ++P +VT+ +L+ G C   +V++A K   D M    V 
Sbjct: 280 GFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKA-KDIFDSMASGGVI 338

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
            + Q++ +++ G C +  +  A+ + EEM   KI  +   YSSLI  L K GR      +
Sbjct: 339 ANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKL 398

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + EM +RG  PN VTY++++   CK    + A  +L  + D+G + +  +Y +++ GLC+
Sbjct: 399 VDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQ 458

Query: 341 DGK 343
            G+
Sbjct: 459 SGR 461



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 140/279 (50%), Gaps = 3/279 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  +++++    +    ++ + +L  +  D  I P  + + +++  Y     + +A  +
Sbjct: 270 NVYTFNILVDGFCKEGKVNDAKVVLAIMMKDD-IKPDVVTYNSLMDGYCSINKVNKAKDI 328

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           FD M+S  V   V+ + T++N       +D    LF+ M  + + P+  +Y+ LI G   
Sbjct: 329 FDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCK 388

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R+  A K+ DEM  R   P +VT+ +++  LC    VD+A+ L  + ++   ++PD  
Sbjct: 389 LGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTN-LKDQGIRPDMY 447

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LIKGLC  G L  A  V E+++     +D   Y+ +I      G  ++  A+L +M
Sbjct: 448 TYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKM 507

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           ++ GC PN+ TY  +I    ++++ + A  +L EM  +G
Sbjct: 508 EDNGCIPNAKTYELVILSLFEKDENDTAEKLLREMIVRG 546



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 139/326 (42%), Gaps = 20/326 (6%)

Query: 24  LFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH---DTRIV 80
           +  N  PNPN     P     ++ LH+             DE   ++    H        
Sbjct: 10  VISNFTPNPNFIGLFPSSIRLFSQLHHKQ-----------DEENNLISSFNHLLLHKNPT 58

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    F  ++    +A+    AL +  +M    ++     FN L+N     G       +
Sbjct: 59  PPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFSI 118

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +I++K   P A ++N LI G  +   +  A    D++V +      V++GTLI GLC 
Sbjct: 119 FAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCK 178

Query: 200 ELRVDEALKLKEDIMRVYN--VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
             R+  AL+L   + RV    V+P+  ++  +I  +C    ++ A  +  +MV  +I  D
Sbjct: 179 VGRITAALQL---LKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPD 235

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y++LIS      + N    +  +MK+    PN  T+N L+ GFCKE     A  +L 
Sbjct: 236 VFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLA 295

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
            M     K + ++YN ++ G C   K
Sbjct: 296 IMMKDDIKPDVVTYNSLMDGYCSINK 321


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 159/331 (48%), Gaps = 38/331 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++  +++I +L +A+  DE   I   L H     P  + FC++I   GR   +  A  +
Sbjct: 445 NIITVNIMIDRLCKAQRLDEACSIFLGLDHKV-CTPDSVTFCSLIDGLGRHGKVNDAYML 503

Query: 106 FDEM--------SSFNVQMTVKFFN-----------------------TLLNPKLTC--- 131
           +++M        +     +   FF                         LLN  + C   
Sbjct: 504 YEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFK 563

Query: 132 -GKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
            G++++ + LF+ I  + ++PD  SY+ILIHG V     +D +K+F EM ++ L      
Sbjct: 564 AGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRA 623

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           +  +I G C   +V++A +L E+ M+   ++P    + S+I GL  +  L  A  + EE 
Sbjct: 624 YNIVIDGFCKSGKVNKAYQLLEE-MKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 682

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
               ++++  +YSSLI    K GR +E   IL+E+ ++G  PN+ T+N L+    K E+ 
Sbjct: 683 KSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEI 742

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + A      M +  C  N ++Y++++ GLCK
Sbjct: 743 DEALVCFQNMKNLKCPPNEVTYSIMVNGLCK 773



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 141/263 (53%), Gaps = 2/263 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG-KLDRMKE 139
           P  ++  N +    +A  +E+   +F+E+ +  +   V+ ++ L++  +  G   D  K 
Sbjct: 549 PDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKL 608

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
            +++ E+ +  D  +YNI+I G   S ++  A+++ +EM  + LQPT+VT+G++I GL  
Sbjct: 609 FYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAK 668

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R+DEA  L E+  +   V  +  V++SLI G   VG +  A  + EE+++  +  +  
Sbjct: 669 IDRLDEAYMLFEE-AKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTY 727

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            ++ L+ AL KA   +E     + MK   C PN VTY+ +++G CK   F  AF    EM
Sbjct: 728 TWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEM 787

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
             +G K N I+Y  ++ GL + G
Sbjct: 788 QKQGLKPNTITYTTMISGLARVG 810



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 156/339 (46%), Gaps = 45/339 (13%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  +L+ Y++ I   G+    D   +  H+LK    +VP ++ F ++IG   +A  ++ A
Sbjct: 268 FNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQG-LVPDDVTFTSMIGVLCKAERVDEA 326

Query: 103 LQMFDEMSSFNVQMTVKFFNTLL-------------------------------NPKLTC 131
           +++F+E+ S      V  +NT++                               N  LTC
Sbjct: 327 VELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTC 386

Query: 132 ----GKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
               GK++    + + M+   +P+  SYNILI     +  LE A KV D M +  L P +
Sbjct: 387 LGRKGKVEEALRILEAMKMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNI 446

Query: 188 VTFGTLIYGLCLELRVDEA----LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
           +T   +I  LC   R+DEA    L L   +       PD   F SLI GL   G+++ A 
Sbjct: 447 ITVNIMIDRLCKAQRLDEACSIFLGLDHKV-----CTPDSVTFCSLIDGLGRHGKVNDAY 501

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            + E+M+      +A +Y+SLI   FK GRK +   I KEM  RGC P+ +  N  +   
Sbjct: 502 MLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCV 561

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            K  + E    + +E+  +G   +  SY++++ GL K G
Sbjct: 562 FKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGG 600



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 140/296 (47%), Gaps = 4/296 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ I+T LGR    +E  +IL  +K D    P    +  +I    +A  LE AL++
Sbjct: 376 SVIAYNCILTCLGRKGKVEEALRILEAMKMDA--APNLTSYNILIDMLCKAGELEAALKV 433

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            D M    +   +   N +++      +LD    +F  ++ K  +PD+ ++  LI G   
Sbjct: 434 QDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGR 493

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             ++ DA+ ++++M+     P  V + +LI       R ++  K+ +++M      PD  
Sbjct: 494 HGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMH-RGCSPDLM 552

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           +  + +  +   GE+     + EE+    +  D   YS LI  L K G   +   +  EM
Sbjct: 553 LLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEM 612

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           KE+G   ++  YN +I GFCK      A+ +L+EM  KG +   ++Y  ++ GL K
Sbjct: 613 KEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAK 668



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 147/302 (48%), Gaps = 18/302 (5%)

Query: 45  YNLLHYDLIITKLGR--AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           Y++L + L+     +   K+F EM++    L  DTR       +  VI  + ++  + +A
Sbjct: 589 YSILIHGLVKGGFSKDTYKLFYEMKE--QGLHLDTRA------YNIVIDGFCKSGKVNKA 640

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME----KYVSPDACSYNIL 158
            Q+ +EM +  +Q TV  + ++++      K+DR+ E + + E    K V  +   Y+ L
Sbjct: 641 YQLLEEMKTKGLQPTVVTYGSVIDG---LAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSL 697

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G     R+++A+ + +E++++ L P   T+  L+  L     +DEAL   ++ M+   
Sbjct: 698 IDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQN-MKNLK 756

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
             P+   ++ ++ GLC V + + A    +EM +  ++ +   Y+++IS L + G   E  
Sbjct: 757 CPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAK 816

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            + +  K  G  P+S  YNA+I G         A+ + +E   KGC+    +  V+L  L
Sbjct: 817 DLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEETRLKGCRIYSKTCVVLLDAL 876

Query: 339 CK 340
            K
Sbjct: 877 HK 878



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 152/354 (42%), Gaps = 36/354 (10%)

Query: 2   PTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAK 61
           P   + +  + RL KD ++AL  F+          +    P  YN L     +  + R +
Sbjct: 97  PQPELVVGVIRRL-KDVRVALHYFRWVERKTKQLHS----PEAYNAL-----LMLMARTR 146

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
             + ++QIL ++       P       ++  + ++R L  A  + + M  F  +     +
Sbjct: 147 NLEYLEQILEEMSM-AGFGPSNNTCIEMVASFVKSRKLREAFGVIETMRKFKFRPAYSAY 205

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIH-----GCVVSR--RLEDAWKV 174
            TL+       + D M  L + M++        Y + +H      CV +R  R++ A  +
Sbjct: 206 TTLIGALSAAHEADPMLTLLRQMQE------IGYEVTVHLFTTLICVFAREGRVDAALSL 259

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLEL-----RVDEALKLKEDIMRVYNVKPDGQVFASL 229
            DEM        LV     +Y +C++      +VD A K   + ++   + PD   F S+
Sbjct: 260 LDEMKSNSFNADLV-----LYNVCIDCFGKVGKVDMAWKFFHE-LKSQGLVPDDVTFTSM 313

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           I  LC    +  A+ + EE+  +K       Y+++I      G+ NE  ++L+  K +GC
Sbjct: 314 IGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGC 373

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            P+ + YN +++   ++   E A  IL+ M       N  SYN+++  LCK G+
Sbjct: 374 IPSVIAYNCILTCLGRKGKVEEALRILEAM-KMDAAPNLTSYNILIDMLCKAGE 426



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 113/264 (42%), Gaps = 28/264 (10%)

Query: 87  CNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL------ 140
           C V+  Y     LE AL  FDEM                 P+L  G + R+K++      
Sbjct: 74  CRVLDTYPWGAALEDALNTFDEMP---------------QPELVVGVIRRLKDVRVALHY 118

Query: 141 FQIMEKYV----SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           F+ +E+      SP+A  YN L+     +R LE   ++ +EM      P+  T   ++  
Sbjct: 119 FRWVERKTKQLHSPEA--YNALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVAS 176

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
                ++ EA  + E  MR +  +P    + +LI  L A  E    L +  +M     E+
Sbjct: 177 FVKSRKLREAFGVIE-TMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEV 235

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
              ++++LI    + GR +   ++L EMK      + V YN  I  F K    + A+   
Sbjct: 236 TVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFF 295

Query: 317 DEMGDKGCKANPISYNVILGGLCK 340
            E+  +G   + +++  ++G LCK
Sbjct: 296 HELKSQGLVPDDVTFTSMIGVLCK 319


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 153/300 (51%), Gaps = 7/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERAL 103
           N++ Y+ II  L + ++ +E  + L ++    R +P +++  N I  GF    +L E A 
Sbjct: 235 NVVTYNTIIDSLCKDRLVNEAVEFLSEMV--DRGIPPDVVTYNTILHGFCSLGQLNE-AT 291

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGC 162
           ++F EM   NV      FN L++     G +   + + + M EK   P+A +YN L+ G 
Sbjct: 292 RLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGY 351

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
            +  ++++A KV   M+ +   P L ++  LI G C   R++EA +L  + M   N+ PD
Sbjct: 352 CLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSE-MSEKNLTPD 410

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              +++L++GLC VG    AL + +EM    +  D   YS L+    K G  +E   +LK
Sbjct: 411 TVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLK 470

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           EM ER  KPN + Y  LI G       E A  +  ++   G + +  +YNV++ GL K+G
Sbjct: 471 EMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEG 530



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 150/301 (49%), Gaps = 5/301 (1%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +N+   +++I  L R    D    ++ ++     I P  I F  +I        ++ A+ 
Sbjct: 129 HNVYSLNVLINCLCRLSHVDFAVSVMGKM-FKLGIQPDAITFNTLINGLCNEGKIKEAVG 187

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHGCV 163
           +F+EM     +  V  +NT++N     G       +F+ ME+    P+  +YN +I    
Sbjct: 188 LFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLC 247

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-KEDIMRVYNVKPD 222
             R + +A +   EMV R + P +VT+ T+++G C   +++EA +L KE + R  NV PD
Sbjct: 248 KDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGR--NVMPD 305

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              F  L+ GLC  G +S A  V E M     E +A  Y++L+       + +E   +L 
Sbjct: 306 TVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLG 365

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            M  +GC PN  +YN LI+G+CK +    A  +L EM +K    + ++Y+ ++ GLC+ G
Sbjct: 366 IMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVG 425

Query: 343 K 343
           +
Sbjct: 426 R 426



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 147/306 (48%), Gaps = 17/306 (5%)

Query: 46  NLLHYDLIITKLGR-------AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           N++ Y+ +I  L +        ++F +M+Q         R  P  + +  +I    + RL
Sbjct: 200 NVISYNTVINGLCKNGNTIMAVRVFRKMEQ--------NRGKPNVVTYNTIIDSLCKDRL 251

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           +  A++   EM    +   V  +NT+L+   + G+L+    LF +++ + V PD  ++NI
Sbjct: 252 VNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNI 311

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L+ G      + +A  V + M ++  +P   T+  L+ G CL  ++DEA+K+   IM   
Sbjct: 312 LVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVL-GIMIGK 370

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
              P+   +  LI G C    ++ A  +  EM    +  D   YS+L+  L + GR  E 
Sbjct: 371 GCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREA 430

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + KEM   G  P+ + Y+ L+ GFCK    + A  +L EM ++  K N I Y +++ G
Sbjct: 431 LNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRG 490

Query: 338 LCKDGK 343
           +   GK
Sbjct: 491 MFIAGK 496



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 99/209 (47%), Gaps = 1/209 (0%)

Query: 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           D +   ++++     P    +   +      ++   A  + ++M    +   + +   LI
Sbjct: 79  DALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLI 138

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
             LC    VD A+ +   + ++  ++PD   F +LI GLC  G++  A+G+  EMV    
Sbjct: 139 NCLCRLSHVDFAVSVMGKMFKL-GIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGH 197

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           E +   Y+++I+ L K G       + ++M++   KPN VTYN +I   CK+     A  
Sbjct: 198 EPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVE 257

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
            L EM D+G   + ++YN IL G C  G+
Sbjct: 258 FLSEMVDRGIPPDVVTYNTILHGFCSLGQ 286


>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]
          Length = 796

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 139/274 (50%), Gaps = 7/274 (2%)

Query: 72  QLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131
           + +HD    P+   F  V+  Y RA  L  A+++   M    ++  +   NT ++  +  
Sbjct: 223 RYRHDPIRRPE--AFGYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMG 280

Query: 132 GKLD---RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
            +LD   R  E  QI+E  + P+  +YN LI G     RLEDA ++  EM  +   P  +
Sbjct: 281 NRLDKAVRFLERMQIVE--IEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKI 338

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           ++ T++  LC E R+ E   L E +++  N+ PD   + + +  L   G    AL    E
Sbjct: 339 SYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLRE 398

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
               +  +D   YS+++ +  + GR ++   I+ EM  +GC P+ VTY ++I+G C+E  
Sbjct: 399 AEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERK 458

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            + A  +L +M   GCK N +SY  +L GLCK+G
Sbjct: 459 VDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNG 492



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 142/307 (46%), Gaps = 13/307 (4%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + FR + + Y  I+    R    D+ ++I++++      +P  + + +VI    + R ++
Sbjct: 402 RRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEM-FSKGCIPDVVTYTSVINGLCQERKVD 460

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILI 159
           +A +M  +M     +     +  LLN     G     +E+  + E+ +  P+A +Y++L+
Sbjct: 461 QAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLM 520

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR---V 216
           HG     +  +A  +  EM+K+   PT V    LI  LC E +VDEA +  E  +     
Sbjct: 521 HGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCA 580

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
            NV      F ++I G C   +L  AL + ++M       D   Y+++I AL K GR  E
Sbjct: 581 VNVVN----FTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEE 636

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM-GDKGCKANPISYNVIL 335
              +  +M   G  P  VTY  +I  +C+    E    +L++M   + C+    +YN ++
Sbjct: 637 ATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRT---AYNQVI 693

Query: 336 GGLCKDG 342
             LC  G
Sbjct: 694 EKLCSFG 700



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 146/309 (47%), Gaps = 8/309 (2%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           P K    + + Y  ++  L + K   E++ ++ ++  D+ ++P ++ +   +    +   
Sbjct: 329 PFKGCSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGH 388

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
            + AL+   E      ++    ++ +++     G++D+ KE+  ++  K   PD  +Y  
Sbjct: 389 GDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTS 448

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL---ELRVDEALKLKEDIM 214
           +I+G    R+++ A K+  +M K   +P  V++  L+ GLC     L   E + + E+  
Sbjct: 449 VINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDW 508

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
            +    P+   ++ L+ G    G+ S A  +  EM++          + LI +L +  + 
Sbjct: 509 WI----PNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKV 564

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +E    +++    GC  N V +  +I GFC+++D EAA ++LD+M       + ++Y  I
Sbjct: 565 DEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTI 624

Query: 335 LGGLCKDGK 343
           +  L K G+
Sbjct: 625 IDALGKKGR 633



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 140/301 (46%), Gaps = 16/301 (5%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           +H  ++  +L +A  F E  QI+        I P  I +  +I  Y     LE A+++  
Sbjct: 274 IHVLVMGNRLDKAVRFLERMQIVE-------IEPNVITYNCLIKGYCDLHRLEDAMELIA 326

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-----PDACSYNILIHGC 162
           EM           + T++     C K  R+KE+  +MEK +      PD  +YN  +H  
Sbjct: 327 EMPFKGCSPDKISYYTVMG--FLC-KEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHML 383

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
                 ++A +   E  +RR +   V +  +++  C E R+D+A ++  ++     + PD
Sbjct: 384 SKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCI-PD 442

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + S+I GLC   ++  A  +  +M +   + +   Y++L++ L K G   E   ++ 
Sbjct: 443 VVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMN 502

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             +E    PN++TY+ L+ GF +E     A  ++ EM  KG    P+  N+++  LC++ 
Sbjct: 503 MSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEE 562

Query: 343 K 343
           K
Sbjct: 563 K 563



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 199 LELRVDEALKLK----EDIMRVYNVKP--DGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           L+L+ DE + L+     D    Y   P    + F  ++      G+L  A+ V   M + 
Sbjct: 202 LQLQTDERVALRFFYWADRQWRYRHDPIRRPEAFGYVMVSYSRAGKLRNAMRVLTMMQKA 261

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
            IE D  I ++ I  L    R ++    L+ M+    +PN +TYN LI G+C     E A
Sbjct: 262 GIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDA 321

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             ++ EM  KGC  + ISY  ++G LCK+ +
Sbjct: 322 MELIAEMPFKGCSPDKISYYTVMGFLCKEKR 352



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 6/145 (4%)

Query: 131 CGKLDRMKELFQIMEKYVS---PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
           C K D    L  + + Y+S   PD  +Y  +I       R+E+A K+  +M++  L PT 
Sbjct: 594 CQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTP 653

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           VT+ T+I+  C   RV++ LKL E ++     +     +  +I+ LC+ G L  A  +  
Sbjct: 654 VTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRT---AYNQVIEKLCSFGNLEQAYKLLG 710

Query: 248 EMVRDKIEMDAGIYSSLISALFKAG 272
           +++R   ++DA     LI +    G
Sbjct: 711 KVLRTASKIDANTCHMLIESYLSKG 735


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 132/268 (49%), Gaps = 18/268 (6%)

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPD 151
           + +A L+E+A + F+EM        V  +  L++  L   K+    ELF+ M  +   P+
Sbjct: 487 FCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPN 546

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRR----------------LQPTLVTFGTLIY 195
             +Y+ LI G   + ++E A ++F+ M   +                 +P +VT+G L+ 
Sbjct: 547 IVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLD 606

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   RV+EA KL  D M +   +P+  V+ +LI GLC VG+L  A  VK EM      
Sbjct: 607 GFCKSHRVEEARKLL-DAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFP 665

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
                YSSLI   FK  R++    +L +M E  C PN V Y  +I G CK    + A+ +
Sbjct: 666 ATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKL 725

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  M +KGC+ N ++Y  ++ G    GK
Sbjct: 726 MQMMEEKGCQPNVVTYTAMIDGFGMIGK 753



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 141/309 (45%), Gaps = 11/309 (3%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  + + Y  +I+ L  A +F+E    L++++  T  +P  + +  ++      + L R 
Sbjct: 257 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRA-TSCLPNVVTYSTLLCGCLNKKQLGRC 315

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHG 161
            ++ + M       + K FN+L++   T G      +L + M K    P    YNILI G
Sbjct: 316 KRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILI-G 374

Query: 162 CVVSRR-------LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
            +   +       L+ A K + EM+   +    +   +    LC   + ++A  +  +++
Sbjct: 375 SICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMI 434

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
                 PD   ++ ++  LC   ++ LA  + EEM R  +  D   Y+ ++ +  KAG  
Sbjct: 435 G-QGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLI 493

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            +      EM+E GC PN VTY ALI  + K +    A  + + M  +GC  N ++Y+ +
Sbjct: 494 EQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSAL 553

Query: 335 LGGLCKDGK 343
           + G CK G+
Sbjct: 554 IDGHCKAGQ 562



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 91/224 (40%), Gaps = 5/224 (2%)

Query: 119 KFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           +F N L+      G     ++EL ++ +    P   +YN LI   + + RL+ A  +  E
Sbjct: 160 QFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHRE 219

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M    L+    T     Y LC   +  EAL L E      N  PD   +  LI GLC   
Sbjct: 220 MSLANLRMDGFTLRCFAYSLCKVGKWREALTLVE----TENFVPDTVFYTKLISGLCEAS 275

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
               A+     M       +   YS+L+       +      +L  M   GC P+   +N
Sbjct: 276 LFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFN 335

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           +L+  +C   D   A+ +L +M   G     + YN+++G +C D
Sbjct: 336 SLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGD 379



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 4/161 (2%)

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
           R +P+  T+  LI       R+D A  +  + M + N++ DG         LC VG+   
Sbjct: 189 RFRPSRSTYNCLIQAFLKADRLDSASLIHRE-MSLANLRMDGFTLRCFAYSLCKVGKWRE 247

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           AL + E    +    D   Y+ LIS L +A    E    L  M+   C PN VTY+ L+ 
Sbjct: 248 ALTLVE---TENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLC 304

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           G   ++       +L+ M  +GC  +P  +N ++   C  G
Sbjct: 305 GCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSG 345



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 105/246 (42%), Gaps = 5/246 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L +    DE  +++ Q+  +    P  + +  +I  +G    +E  L++
Sbjct: 702 NVVIYTEMIDGLCKVGKTDEAYKLM-QMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 760

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILIHGCVV 164
            + M S  V      +  L++     G LD    L + M++   P     Y  +I G   
Sbjct: 761 LERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEG--F 818

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD-G 223
           ++   ++  + DE+ +    P L  +  LI  L    R++ AL+L E++        D  
Sbjct: 819 NKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYS 878

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + SLI+ LC   ++  A  +  EM +  +  +   + SLI  LF+  + +E   +L  
Sbjct: 879 STYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDF 938

Query: 284 MKERGC 289
           +    C
Sbjct: 939 ISHMVC 944


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 158/299 (52%), Gaps = 3/299 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R +++ Y+ II  L + K+  +   +  ++  + R+ P  + + ++I  +     L++A 
Sbjct: 186 RPDVVMYNTIIDGLCKDKLVRDAFDLYCEM-FEKRVFPNVVTYTSLIYGFCIVGQLDKAF 244

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
            + +EM   NV   V  FNTL++     GK+   K L  +M K  V PD  +YN L+ G 
Sbjct: 245 GLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGY 304

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
            + +    A  VF+ M +  +   + ++  +I GL     +DEA+ L E  MR  NV PD
Sbjct: 305 FLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEG-MRNENVIPD 363

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              ++SLI GLC  G ++ AL   +EM       +   Y+SLI AL K+ + ++  A+LK
Sbjct: 364 VVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLK 423

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           ++K++G + N  TYN L+ G CK+     A  +  ++  KG   + ++Y++++ GLCK+
Sbjct: 424 KIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKE 482



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 137/266 (51%), Gaps = 6/266 (2%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +++  +I    + +L+  A  ++ EM    V   V  + +L+      G+LD+   L
Sbjct: 187 PDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGL 246

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
             +++ K V+P+ C++N L+ G     ++ +A  +   M+K  + P + T+  L+ G  L
Sbjct: 247 LNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFL 306

Query: 200 ELRVDEALKLKE--DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
              V EA K K   +IM    V  D   ++ +I GL  +  L  A+ + E M  + +  D
Sbjct: 307 ---VKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPD 363

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              YSSLI  L K+GR N     + EM +RG  PN +TY +LI   CK    + A  +L 
Sbjct: 364 VVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLK 423

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
           ++ D+G +AN  +YN+++ GLCKDG+
Sbjct: 424 KIKDQGIQANMYTYNILVDGLCKDGR 449



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 129/278 (46%), Gaps = 37/278 (13%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNI 157
           ++ +L   D + S  +++    + TL+N     G+      L + +E  +  PD   YN 
Sbjct: 135 VKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNT 194

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I G    + + DA+ ++ EM ++R+ P +VT+ +LIYG C+  ++D+A  L  + M + 
Sbjct: 195 IIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNE-MVLK 253

Query: 218 NVKPDGQVFASLIKGLCAVGELS-----LALGVKEE------------------------ 248
           NV P+   F +L+ GLC  G++      +A+ +KE                         
Sbjct: 254 NVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKA 313

Query: 249 ------MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
                 M +  +  D   YS +IS L K    +E   + + M+     P+ V Y++LI G
Sbjct: 314 KNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDG 373

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            CK     +A   +DEM D+G   N I+Y  ++  LCK
Sbjct: 374 LCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCK 411



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 130/295 (44%), Gaps = 35/295 (11%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  I F  ++G   + +     + +F  M    +Q      N L+N      +++    +
Sbjct: 47  PPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSV 106

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +I++    PD  +Y  LI G  ++ +++++    D +V + ++   V++GTLI GLC 
Sbjct: 107 FAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCK 166

Query: 200 ELRVDEALKLKEDI--------MRVYNVKPDG--------------------------QV 225
             +   AL+L   I        + +YN   DG                            
Sbjct: 167 IGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVT 226

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + SLI G C VG+L  A G+  EMV   +  +   +++L+  L K G+  E  +++  M 
Sbjct: 227 YTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMM 286

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + G  P+  TYNAL+ G+   ++   A  + + M   G   +  SY+V++ GL K
Sbjct: 287 KEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSK 341



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 1/170 (0%)

Query: 174 VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGL 233
           +F  M    +Q   +T   LI   C   +++ A  +   I+++   +PD   + +LI+GL
Sbjct: 71  LFQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKL-GYQPDIITYTTLIRGL 129

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           C  G++  +L   + +V   I++D   Y +LI+ L K G+      +L++++   C+P+ 
Sbjct: 130 CLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDV 189

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           V YN +I G CK++    AF +  EM +K    N ++Y  ++ G C  G+
Sbjct: 190 VMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQ 239



 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/179 (18%), Positives = 87/179 (48%), Gaps = 2/179 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I  L ++   +   + + ++ HD    P  I + ++I    ++  +++A+ +
Sbjct: 363 DVVAYSSLIDGLCKSGRINSALKYVDEM-HDRGQPPNVITYTSLIDALCKSHQVDKAIAL 421

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
             ++    +Q  +  +N L++     G+L   +++FQ ++ K  + D  +Y+I+I+G   
Sbjct: 422 LKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCK 481

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
               ++A  +  +M  +   P  + + T+I     +   D+A KL  +++   + K +G
Sbjct: 482 ESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREMIDCVDYKDNG 540


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 139/285 (48%), Gaps = 13/285 (4%)

Query: 70  LHQLKHDTRIV---------PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           L QL   TR+          P  + +  +I    + RL+  A     EM    +   V  
Sbjct: 281 LGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVT 340

Query: 121 FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           + T+L+     G+L+    LF+ ME K   PD  +YN +I      R + DA +   EMV
Sbjct: 341 YTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMV 400

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKL-KEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
            R + P  VT+ T+++G C   ++DEA +L KE + R  NV P+   F+ L+ GLC  G 
Sbjct: 401 DRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGR--NVMPNTLTFSILVDGLCQEGM 458

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           +S A  V E M    +E +   Y++L++      + NE   + + M  +GC P+  +YN 
Sbjct: 459 VSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNI 518

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           LI+G+C     + A  +L +M  K    N ++YN I+ GLC  G+
Sbjct: 519 LINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGR 563



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 130/249 (52%), Gaps = 4/249 (1%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDAC 153
           R   ++ A+ ++ +M    +Q  V  F TL+N     GK+    EL+ +++     PD  
Sbjct: 140 RLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVI 199

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKED 212
           SYN LI+G   S     A  VF +M +   +P +VT+ T+I  LC +  V++A+  L E 
Sbjct: 200 SYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEM 259

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           + R   + PD   + S++ GLC +G+L+ A  + + M ++  + D   Y+ +I +L+K  
Sbjct: 260 VGR--GIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDR 317

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
             N+    L EM ++G  P+ VTY  ++ G C       A  +  +M  KGCK + ++YN
Sbjct: 318 LVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYN 377

Query: 333 VILGGLCKD 341
            I+  LCKD
Sbjct: 378 TIIDSLCKD 386



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 131/266 (49%), Gaps = 2/266 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  I F  +I        ++ A+++++EM     +  V  +NTL+N     G  +   
Sbjct: 159 IQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAV 218

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            +F+ ME+    P+  +YN +I      R + DA     EMV R + P  +T+ ++++GL
Sbjct: 219 HVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGL 278

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C   +++EA +L +  M     KPD   +  +I  L     ++ A     EMV   I  D
Sbjct: 279 CCLGQLNEATRLFKR-MEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPD 337

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y++++  L   G+ NE   + K+M+++GCKP+ V YN +I   CK+     A   L 
Sbjct: 338 VVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLS 397

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
           EM D+G   N ++Y+ IL G C  G+
Sbjct: 398 EMVDRGIPPNAVTYSTILHGFCNLGQ 423



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 169/337 (50%), Gaps = 19/337 (5%)

Query: 8   LACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQ 67
           L CL +L +    A +LFK         E +  KP   +++ Y++II  L + ++ ++  
Sbjct: 278 LCCLGQLNE----ATRLFKR-------MEQNGCKP---DVVTYNIIIDSLYKDRLVNDAA 323

Query: 68  QILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127
             L ++  D  I P  + +  ++        L  A+++F +M     +  V  +NT+++ 
Sbjct: 324 DFLSEMV-DQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIID- 381

Query: 128 KLTCGKL--DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
            L   +L  D M+ L +++++ + P+A +Y+ ++HG     +L++A ++F EMV R + P
Sbjct: 382 SLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMP 441

Query: 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
             +TF  L+ GLC E  V EA  + E  M    V+P+   + +L+ G C   +++ A  V
Sbjct: 442 NTLTFSILVDGLCQEGMVSEARWVFE-TMTEKGVEPNIYTYNALMNGYCLRCKMNEARKV 500

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
            E MV      D   Y+ LI+    + R ++  A+L +M  +   PN+VTYN ++ G C 
Sbjct: 501 FEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCY 560

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
                 A  +  +M   G     ++Y+++L GLCK G
Sbjct: 561 VGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHG 597



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 149/298 (50%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ II  L + ++ ++  + L ++  D  I P  + +  ++  +     L+ A Q+
Sbjct: 372 DVVAYNTIIDSLCKDRLVNDAMEFLSEMV-DRGIPPNAVTYSTILHGFCNLGQLDEATQL 430

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F EM   NV      F+ L++     G +   + +F+ M EK V P+  +YN L++G  +
Sbjct: 431 FKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCL 490

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             ++ +A KVF+ MV +   P L ++  LI G C   R+D+A  L    M V  + P+  
Sbjct: 491 RCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQ-MSVKKLTPNTV 549

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +++KGLC VG L  A  + ++M    +      YS L++ L K G  +E   + K M
Sbjct: 550 TYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSM 609

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           KE+  +P+ + Y  LI G       E A  +  ++   G +    +YNV++ GL K+G
Sbjct: 610 KEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEG 667



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 130/264 (49%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F   +G   + +     + + ++M  F V  TV   N L+N       +D    +
Sbjct: 91  PSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRLNHVDFAVSV 150

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           +  M K  + PD  ++  LI+G     +++ A ++++EMV+   +P ++++ TLI GLC 
Sbjct: 151 WGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCN 210

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
               + A+ + +  M     KP+   + ++I  LC    ++ A+    EMV   I  DA 
Sbjct: 211 SGNTNMAVHVFKK-MEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAI 269

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+S++  L   G+ NE   + K M++ GCKP+ VTYN +I    K+     A   L EM
Sbjct: 270 TYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEM 329

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
            D+G   + ++Y  IL GLC  G+
Sbjct: 330 VDQGIPPDVVTYTTILHGLCYLGQ 353



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 134/272 (49%), Gaps = 3/272 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y  I+         DE  Q+  ++     ++P  + F  ++    +  ++  A  +
Sbjct: 407 NAVTYSTILHGFCNLGQLDEATQLFKEMV-GRNVMPNTLTFSILVDGLCQEGMVSEARWV 465

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F+ M+   V+  +  +N L+N      K++  +++F+IM  K  +PD  SYNILI+G   
Sbjct: 466 FETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCN 525

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           SRR++ A  +  +M  ++L P  VT+ T++ GLC   R+ +A +L +  M    + P   
Sbjct: 526 SRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKK-MCSSGMLPTLM 584

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++ L+ GLC  G L  AL + + M   K+E D  +Y+ LI  +F  G+      +  ++
Sbjct: 585 TYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKL 644

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
              G +P   TYN +I G  KE   + A+ + 
Sbjct: 645 SADGIQPPGRTYNVMIKGLLKEGLSDEAYELF 676



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 129/264 (48%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  +I    + RL+  A++   EM    +      ++T+L+     G+LD   +L
Sbjct: 371 PDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQL 430

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ + V P+  +++IL+ G      + +A  VF+ M ++ ++P + T+  L+ G CL
Sbjct: 431 FKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCL 490

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             +++EA K+ E IM      PD   +  LI G C    +  A  +  +M   K+  +  
Sbjct: 491 RCKMNEARKVFE-IMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTV 549

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++++  L   GR  +   + K+M   G  P  +TY+ L++G CK    + A  +   M
Sbjct: 550 TYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSM 609

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
            +K  + + I Y +++ G+   GK
Sbjct: 610 KEKKLEPDIILYTILIEGMFIGGK 633



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 98/211 (46%), Gaps = 36/211 (17%)

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFG-----------------------------------T 192
           ++DA   F  M +   +P++V FG                                    
Sbjct: 74  VDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNI 133

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           LI  LC    VD A+ +   + ++  ++PD   F +LI G+C  G++ +A+ +  EMVR 
Sbjct: 134 LINCLCRLNHVDFAVSVWGKMFKL-GIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRS 192

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
             E D   Y++LI+ L  +G  N    + K+M++ GCKPN VTYN +I   CK+     A
Sbjct: 193 GHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDA 252

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              L EM  +G   + I+YN I+ GLC  G+
Sbjct: 253 MDFLSEMVGRGIPPDAITYNSIVHGLCCLGQ 283


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 162/334 (48%), Gaps = 38/334 (11%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +N   Y++I   L +     E  Q+L Q++     +P  I +  VI  Y +   L+R L+
Sbjct: 251 WNTASYNIITHSLCQLGRVVEAHQLLLQMELRG-CIPDVISYSTVINGYCQVGELQRVLK 309

Query: 105 MFDEMS---------SFN--VQMTVK------------------------FFNTLLNPKL 129
           + +EM          ++N  + +  K                         + TL++   
Sbjct: 310 LIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFC 369

Query: 130 TCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
             G +     LF  M+K  +SPD  +Y  +I G   + R+ +A K+F EMV +RL+P  V
Sbjct: 370 KLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEV 429

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           T+  LI G C E ++ EA  L   ++++  + P+   + +L  GLC  GE+  A  +  E
Sbjct: 430 TYTALIDGYCKEGKMKEAFSLHNQMLQM-GLTPNIVTYTALADGLCKCGEVDTANELLHE 488

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M R  +E++   Y+SL++ L KAG  ++   ++K+M+  G  P++VTY  L+  +CK  +
Sbjct: 489 MCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSRE 548

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
              A  +L +M D+  +   +++NV++ G C  G
Sbjct: 549 MVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSG 582



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 169/350 (48%), Gaps = 17/350 (4%)

Query: 8   LACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLH-----------YDLIITK 56
           +A +    KD K+A +L ++   NPN         F   L++           +D+    
Sbjct: 132 VAQIATASKDLKMARKLIQDFWVNPNLDVGVSFGHFVEQLIYTYKDWGSDPRVFDIFFQV 191

Query: 57  LGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL--LERALQMFDEMSSFNV 114
           L  A M DE +++  ++ +   ++   +  CN+   +    L  ++ AL++F E     V
Sbjct: 192 LVEAGMLDEARKLFDKMLNYGLLIS--VDSCNLFISHLSEDLDGIKIALKVFVEFPEVGV 249

Query: 115 QMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWK 173
                 +N + +     G++    +L   ME +   PD  SY+ +I+G      L+   K
Sbjct: 250 CWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLK 309

Query: 174 VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGL 233
           + +EM  + L+P   T+  +I  LC   +V EA ++  +++    + PDG ++ +LI G 
Sbjct: 310 LIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMIS-EGIAPDGVIYTTLIDGF 368

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           C +G +S A  + +EM + KI  D   Y+++I  L + GR  E   +  EM  +  +P+ 
Sbjct: 369 CKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDE 428

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           VTY ALI G+CKE   + AF++ ++M   G   N ++Y  +  GLCK G+
Sbjct: 429 VTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGE 478



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 140/285 (49%), Gaps = 18/285 (6%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVK 119
           ++FDEMQ+         +I P  I +  VI G     R++E A ++F EM    ++    
Sbjct: 379 RLFDEMQK--------RKISPDFITYTAVICGLCQTGRVME-ADKLFHEMVCKRLEPDEV 429

Query: 120 FFNTLLNPKLTCGKLDRMKELF----QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVF 175
            +  L++     GK   MKE F    Q+++  ++P+  +Y  L  G      ++ A ++ 
Sbjct: 430 TYTALIDGYCKEGK---MKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELL 486

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
            EM ++ L+  + T+ +L+ GLC    +D+A+KL +D M V    PD   + +L+   C 
Sbjct: 487 HEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKD-MEVAGFHPDAVTYTTLMDAYCK 545

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
             E+  A  +  +M+  +++     ++ L++    +G   +   +LK M E+G  PN+ T
Sbjct: 546 SREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATT 605

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           YN+LI  +C   +  A   I   M  KG   +  +YN+++ G CK
Sbjct: 606 YNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCK 650



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 114/236 (48%), Gaps = 2/236 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           ++ A ++  EM    +++ +  +N+L+N     G +D+  +L + ME     PDA +Y  
Sbjct: 479 VDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTT 538

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L+     SR +  A ++  +M+ R LQPT+VTF  L+ G C+   +++  KL + ++   
Sbjct: 539 LMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLE-K 597

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + P+   + SLIK  C    +     +   M    +  D   Y+ LI    KA    E 
Sbjct: 598 GIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEA 657

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             + ++M  +G      +YNALI GF K + F  A  + ++M  +G  A+   YN+
Sbjct: 658 WFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNI 713


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 122/227 (53%), Gaps = 8/227 (3%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFD 176
           +NT +N    C + D +    ++M+  V     PD  +YNI+++    + +LE+A  + +
Sbjct: 289 YNTFVNG--LC-QNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILN 345

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
           +MV R   P + TF TLI  LC   R++EAL L   +  V  V PD   F  LI  LC V
Sbjct: 346 QMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT-VKGVSPDVYTFNILINALCKV 404

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           G+  LAL + EEM       D   Y++LI  L   G+  +   +LK+M+  GC  +++TY
Sbjct: 405 GDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITY 464

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           N +I G CK+   E A  + D+M  +G   N I++N ++ GLCKD K
Sbjct: 465 NTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKK 511



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 128/242 (52%), Gaps = 2/242 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC-SYNILIH 160
           AL++F+EM +         +NTL++   + GKL +  +L + ME    P +  +YN +I 
Sbjct: 410 ALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIID 469

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     R+E+A +VFD+M  + +    +TF TLI GLC + ++D+A +L   ++    ++
Sbjct: 470 GLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMIS-EGLQ 528

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   + S++   C  G++  A  + E M  +  E+D   Y +LI+ L KAGR      +
Sbjct: 529 PNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKV 588

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L+ M+ +G +P    YN ++    +  +   A ++  EM + G   + ++Y ++  GLC+
Sbjct: 589 LRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCR 648

Query: 341 DG 342
            G
Sbjct: 649 GG 650



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 145/288 (50%), Gaps = 11/288 (3%)

Query: 61  KMFDE-MQQILHQLKHDTRIVPKEIIF---CNVIGFYGRARLLERALQMFDEMSSFNVQM 116
           ++FD+ +  IL+QL+    I    +++    NV+    + +LLE    ++ EM +  ++ 
Sbjct: 123 QLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLE---SVYSEMGARGIKP 179

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVF 175
            V  FNTL+       ++     + + M  + V+PD  ++  L+ G V    +E A +V 
Sbjct: 180 DVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVK 239

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDIMRVYNVKPDGQVFASLIKGLC 234
             M++     T VT   LI G C   RV++AL  ++++I   +  +PD   + + + GLC
Sbjct: 240 ARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGF--EPDQITYNTFVNGLC 297

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
               +  AL V + MV++  + D   Y+ +++ L K G+  E   IL +M +RGC P+  
Sbjct: 298 QNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDIT 357

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           T+N LI+  C     E A  +  ++  KG   +  ++N+++  LCK G
Sbjct: 358 TFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVG 405



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 126/246 (51%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           LE A  + ++M        +  FNTL+    T  +L+   +L  Q+  K VSPD  ++NI
Sbjct: 337 LEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNI 396

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+          A ++F+EM      P  VT+ TLI  LC   ++ +AL L +D M   
Sbjct: 397 LINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKD-MEST 455

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
                   + ++I GLC    +  A  V ++M    I  +A  +++LI  L K  + ++ 
Sbjct: 456 GCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDA 515

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++ +M   G +PN++TYN++++ +CK+ D + A  IL+ M   G + + ++Y  ++ G
Sbjct: 516 FELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLING 575

Query: 338 LCKDGK 343
           LCK G+
Sbjct: 576 LCKAGR 581



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 145/331 (43%), Gaps = 43/331 (12%)

Query: 13  RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ 72
           R Q DP  AL++  N     +D    P          Y+ II KLG     D M+ ++ +
Sbjct: 49  REQPDPDAALRML-NAALARDDFAPGPEV--------YEEIIRKLGAVGALDLMKVLVAE 99

Query: 73  LKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132
           ++ +   V   ++   +  + G+        Q+FD+                        
Sbjct: 100 MRREGHQVKLGVVHSFLDSYEGQ--------QLFDDAVDL-------------------- 131

Query: 133 KLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
            L++++ LF I       D   YN L++  V   +++    V+ EM  R ++P +VTF T
Sbjct: 132 ILNQLQPLFGI-----QADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNT 186

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           L+  LC   +V  A+ + E+ M    V PD   F +L++G    G +  AL VK  M+  
Sbjct: 187 LMKALCRAHQVRTAVLMLEE-MSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEM 245

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
                    + LI+   K GR  +    +++    G +P+ +TYN  ++G C+ +    A
Sbjct: 246 GCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHA 305

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             ++D M  +G   +  +YN+++  LCK+G+
Sbjct: 306 LKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQ 336



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 138/284 (48%), Gaps = 11/284 (3%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           ++F+EM+        ++   P E+ +  +I        L +AL +  +M S     +   
Sbjct: 412 RLFEEMK--------NSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTIT 463

Query: 121 FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +NT+++      +++  +E+F  M+ + +S +A ++N LI G    ++++DA+++ ++M+
Sbjct: 464 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMI 523

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
              LQP  +T+ +++   C +  + +A  + E  M     + D   + +LI GLC  G  
Sbjct: 524 SEGLQPNNITYNSILTHYCKQGDIKKAADILE-TMTANGFEVDVVTYGTLINGLCKAGRT 582

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
            +AL V   M    +      Y+ ++ +LF+     +  ++ +EM E G  P+++TY  +
Sbjct: 583 QVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIV 642

Query: 300 ISGFCKEED-FEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             G C+     + AF  + EM DKG      S+ ++  GL   G
Sbjct: 643 FRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLG 686


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 162/323 (50%), Gaps = 3/323 (0%)

Query: 21  ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
           AL  +KN N   N       K  R N++ Y+ +I  L     + +  ++L  +  + +I 
Sbjct: 248 ALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM-IERKIN 306

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  +I  + +   L  A +++DEM   ++   +  +++L+N      +LD  K +
Sbjct: 307 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 366

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F++M  K   P+  +YN LI G   ++R+E+  ++F EM +R L    VT+ TLI GL  
Sbjct: 367 FELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 426

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
               D A K+ +  M    V PD   ++ L+ GLC  G+L  AL V E + + K+E D  
Sbjct: 427 AGDCDMAQKIFKK-MVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIY 485

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+ +I  + KAG+  +   +   +  +G KPN + Y  +ISGFC++   E A  +  EM
Sbjct: 486 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 545

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
            + G   N  +YN ++    +DG
Sbjct: 546 KEDGTLPNSGTYNTLIRARLRDG 568



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 153/299 (51%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L  Y  ++  L +    D    +L +++   +I    +I+  +I      + +  AL +
Sbjct: 203 DLFTYGTVVNGLCKRGDIDLALSLLKKMEKG-KIEADVVIYTTIIDALCNYKNVNDALNL 261

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           F EM +  ++  V  +N+L+      G+  D  + L  ++E+ ++P+  +++ LI   V 
Sbjct: 262 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 321

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L +A K++DEM+KR + P + T+ +LI G C+  R+DEA  + E +M   +  P+  
Sbjct: 322 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE-LMISKDCFPNVV 380

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LIKG C    +   + +  EM +  +  +   Y++LI  LF+AG  +    I K+M
Sbjct: 381 TYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM 440

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  P+ +TY+ L+ G CK    E A  + + +     + +  +YN+++ G+CK GK
Sbjct: 441 VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGK 499



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 130/266 (48%), Gaps = 4/266 (1%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F  +I G +   +  E A+ + D M +   Q  +  + T++N     G +D    
Sbjct: 167 PNTVTFNTLIHGLFLHNKASE-AVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALS 225

Query: 140 LFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L + MEK  +  D   Y  +I      + + DA  +F EM  + ++P +VT+ +LI  LC
Sbjct: 226 LLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 285

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              R  +A +L  D++    + P+   F++LI      G+L  A  + +EM++  I+ D 
Sbjct: 286 NYGRWSDASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 344

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             YSSLI+      R +E   + + M  + C PN VTYN LI GFCK +  E    +  E
Sbjct: 345 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFRE 404

Query: 319 MGDKGCKANPISYNVILGGLCKDGKC 344
           M  +G   N ++YN ++ GL + G C
Sbjct: 405 MSQRGLVGNTVTYNTLIQGLFQAGDC 430



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 123/246 (50%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           L+ A+ +F EM       ++  FN LL+      K D +  L + M+   +S D  SYNI
Sbjct: 45  LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 104

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+      +L  A  V  +M+K   +P +VT  +L+ G C   R+ EA+ L  D M V 
Sbjct: 105 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALV-DQMFVM 163

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             +P+   F +LI GL    + S A+ + + MV    + D   Y ++++ L K G  +  
Sbjct: 164 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 223

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            ++LK+M++   + + V Y  +I   C  ++   A  +  EM +KG + N ++YN ++  
Sbjct: 224 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 283

Query: 338 LCKDGK 343
           LC  G+
Sbjct: 284 LCNYGR 289



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 103/214 (48%), Gaps = 6/214 (2%)

Query: 132 GKLDRMKELFQIMEKYVSPDACSYNI---LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
            +L +   LF +   Y S  A SY+    L    ++  +L+DA  +F EMV+ R  P++V
Sbjct: 8   AQLRKASPLFSLRGVYFS--AASYDYREKLSRNVLLDLKLDDAVDLFGEMVQSRPLPSIV 65

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
            F  L+  +    + D  + L E  M+   +  D   +  LI   C   +L LAL V  +
Sbjct: 66  EFNKLLSAIAKMNKFDLVISLGER-MQNLRISYDLYSYNILINCFCRRSQLPLALAVLGK 124

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M++   E D    SSL++      R +E  A++ +M     +PN+VT+N LI G      
Sbjct: 125 MMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNK 184

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
              A  ++D M  +GC+ +  +Y  ++ GLCK G
Sbjct: 185 ASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRG 218


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 151/288 (52%), Gaps = 3/288 (1%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           +I  LGR    D+   +  ++  D+  +P  +++ ++I  + +    E   +++ EM   
Sbjct: 488 LIDGLGRRGRVDDAYSLYEKM-LDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHR 546

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDA 171
                +   N+ ++     G++++ + LF+ I  + + PD  SY+ILIHG V +    + 
Sbjct: 547 GCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRET 606

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIK 231
           +K+F EM ++ L   ++ + T+I G C   +VD+A +L E+ M+   ++P    + S++ 
Sbjct: 607 YKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEE-MKTKGLQPTVVTYGSVVD 665

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           GL  +  L  A  + EE     ++++  IYSSLI    K GR +E   IL+E+ ++G  P
Sbjct: 666 GLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTP 725

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           NS T+N L+    K E+ + A      M +  C  N ++Y++++ GLC
Sbjct: 726 NSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLC 773



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 153/340 (45%), Gaps = 45/340 (13%)

Query: 42  PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLER 101
            F  +L+ Y++ I   G+    D   +  H++K    +VP ++ +  +IG   +AR L+ 
Sbjct: 268 SFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQG-LVPDDVTYTTLIGVLCKARRLDE 326

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLL-------------------------------NPKLT 130
           A+++F+E+        V  +NT++                               N  LT
Sbjct: 327 AVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILT 386

Query: 131 C----GKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
           C    GK++    +   M +  +P+  +YNILI     +  LE A KV D M +  L P 
Sbjct: 387 CLGRKGKVEEALRIHDEMRQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPN 446

Query: 187 LVTFGTLIYGLCLELRVDEA----LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
           ++T   +I  LC   ++DEA    L L   +       PD + F SLI GL   G +  A
Sbjct: 447 IMTVNIMIDRLCKAQKLDEACSIFLGLDHKV-----CSPDSRTFCSLIDGLGRRGRVDDA 501

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
             + E+M+      +  +Y+SLI   FK GRK +   I KEM  RGC P+ +  N+ +  
Sbjct: 502 YSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDC 561

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             K  + E    + +E+  +G   +  SY++++ GL K G
Sbjct: 562 VFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAG 601



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 144/297 (48%), Gaps = 6/297 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ I+T LGR    +E  +I  +++ D    P    +  +I    +A  LE AL++
Sbjct: 377 SVIAYNCILTCLGRKGKVEEALRIHDEMRQDA--APNLTTYNILIDMLCKAGELEAALKV 434

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            D M    +   +   N +++      KLD    +F  ++ K  SPD+ ++  LI G   
Sbjct: 435 QDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGR 494

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-KEDIMRVYNVKPDG 223
             R++DA+ ++++M+     P +V + +LI       R ++  K+ KE + R     PD 
Sbjct: 495 RGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHR--GCSPDL 552

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
            +  S +  +   GE+     + EE+    +  D   YS LI  L KAG   E   +  E
Sbjct: 553 MLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYE 612

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           MKE+G   + + YN +I GFCK    + A+ +L+EM  KG +   ++Y  ++ GL K
Sbjct: 613 MKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAK 669



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 153/311 (49%), Gaps = 12/311 (3%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           + +A  L P   ++  Y ++I  L +A    E  ++ +++K +  +    + +  VI  +
Sbjct: 577 EIKAQGLVP---DVRSYSILIHGLVKAGFSRETYKLFYEMK-EQGLHLDVLAYNTVIDGF 632

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----VS 149
            ++  +++A Q+ +EM +  +Q TV  + ++++      K+DR+ E + + E+     V 
Sbjct: 633 CKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDG---LAKIDRLDEAYMLFEEAKSIGVD 689

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
            +   Y+ LI G     R+++A+ + +E++++ L P   T+  L+  L     +DEA   
Sbjct: 690 LNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVC 749

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            ++ M+     P+   ++ +I GLC + + + A    +EM +  ++ +   Y+++I+ L 
Sbjct: 750 FQN-MKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLA 808

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           KAG   E   +    K  G  P+S  YNA+I G         A+ + +E   KGC+ N  
Sbjct: 809 KAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSK 868

Query: 330 SYNVILGGLCK 340
           +  V+L  L K
Sbjct: 869 TCVVLLDALHK 879



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 138/302 (45%), Gaps = 4/302 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           FR     Y  +I  L  A   D M  + HQ++ +        +F  ++  + R   ++ A
Sbjct: 199 FRPAFSAYTTLIGALSAANRPDPMLTLFHQMQ-EIGYEANVHLFTTLVRVFAREGRIDAA 257

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHG 161
           L + DEM S +    +  +N  ++     GK+D   + F  M+ + + PD  +Y  LI  
Sbjct: 258 LSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGV 317

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              +RRL++A ++F+E+   R  P +  + T+I G     + DEA  L E   R   + P
Sbjct: 318 LCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCI-P 376

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
               +  ++  L   G++  AL + +EM +D    +   Y+ LI  L KAG       + 
Sbjct: 377 SVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAP-NLTTYNILIDMLCKAGELEAALKVQ 435

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             MKE G  PN +T N +I   CK +  + A +I   +  K C  +  ++  ++ GL + 
Sbjct: 436 DTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRR 495

Query: 342 GK 343
           G+
Sbjct: 496 GR 497



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 135/285 (47%), Gaps = 37/285 (12%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG-KLDRMKELFQIMEKYVSPDAC 153
           +A  +E+   +F+E+ +  +   V+ ++ L++  +  G   +  K  +++ E+ +  D  
Sbjct: 564 KAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVL 623

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN +I G   S +++ A+++ +EM  + LQPT+VT+G+++ GL    R+DEA  L E+ 
Sbjct: 624 AYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEA 683

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
             +  V  +  +++SLI G   VG +  A  + EE+++  +  ++  ++ L+ AL KA  
Sbjct: 684 KSI-GVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEE 742

Query: 274 KNEFPA-----------------------------------ILKEMKERGCKPNSVTYNA 298
            +E                                        +EM+++G KPN++TY  
Sbjct: 743 IDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTT 802

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +I+G  K  +   A  + D     G   +   YN ++ GL    K
Sbjct: 803 MIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANK 847



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 112/251 (44%), Gaps = 2/251 (0%)

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDA 152
            R R L+   Q+ +EMS     ++      L+   +   KL     + ++M K+   P  
Sbjct: 144 ARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMMRKFKFRPAF 203

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +Y  LI     + R +    +F +M +   +  +  F TL+     E R+D AL L ++
Sbjct: 204 SAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDE 263

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M+  +   D  ++   I     VG++ +A     EM    +  D   Y++LI  L KA 
Sbjct: 264 -MKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKAR 322

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           R +E   + +E+      P    YN +I G+     F+ A+++L+    KGC  + I+YN
Sbjct: 323 RLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYN 382

Query: 333 VILGGLCKDGK 343
            IL  L + GK
Sbjct: 383 CILTCLGRKGK 393


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 154/309 (49%), Gaps = 8/309 (2%)

Query: 37  AHPLKPFRYNLLHYDLIITKL-GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           A P++P  Y    Y+ +I  L GR +  + +  +   L+     VP  + +  ++    +
Sbjct: 145 AMPMEPDTYT---YNTLIRGLCGRGRTDNALAVLDDMLRRG--CVPDVVTYTILLEATCK 199

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACS 154
               ++A+++ DEM        +  +N ++N     G++D   E  + +  Y   P+  S
Sbjct: 200 RSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVS 259

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YNI++ G   + R EDA K+  EM ++   P +VTF  LI  LC    V+ A+++ + I 
Sbjct: 260 YNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIP 319

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           + Y   P+   +  ++   C   ++  A+   E MV      D   Y++L++AL + G  
Sbjct: 320 K-YGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEV 378

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +    +L ++K++GC P  ++YN +I G  K    E A  +L+EM  KG + + I+Y+ I
Sbjct: 379 DAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTI 438

Query: 335 LGGLCKDGK 343
             GLC++G+
Sbjct: 439 SSGLCREGR 447



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 138/297 (46%), Gaps = 36/297 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y++++  L  A+ +++ ++++ ++    R  P  + F  +I F  R  L+E A+++
Sbjct: 256 NTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGR-PPNVVTFNMLISFLCRRGLVEPAMEI 314

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
            D++                 PK  C                 +P++ SYN ++H     
Sbjct: 315 LDQI-----------------PKYGC-----------------TPNSLSYNPILHAFCKQ 340

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
           ++++ A    + MV     P +V++ TL+  LC    VD A++L    ++     P    
Sbjct: 341 KKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQ-LKDKGCTPVLIS 399

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + ++I GL   G+   AL +  EMV   ++ D   YS++ S L + GR  E      +++
Sbjct: 400 YNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQ 459

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + G +PN+V YNA++ G CK     +A  +   M   GC  N  +Y +++ GL  +G
Sbjct: 460 DMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEG 516



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 104/193 (53%), Gaps = 4/193 (2%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PD  SYN ++ G  V+ +L++A ++   M    ++P   T+ TLI GLC   R D AL +
Sbjct: 118 PDVMSYNAMVAGYCVTGQLDNARRLVAAM---PMEPDTYTYNTLIRGLCGRGRTDNALAV 174

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            +D++R   V PD   +  L++  C       A+ + +EM       D   Y+ +++ + 
Sbjct: 175 LDDMLRRGCV-PDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGIC 233

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           + GR ++    LK +   GC+PN+V+YN ++ G C  E +E A  ++ EM  KG   N +
Sbjct: 234 QEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVV 293

Query: 330 SYNVILGGLCKDG 342
           ++N+++  LC+ G
Sbjct: 294 TFNMLISFLCRRG 306



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 9/208 (4%)

Query: 132 GKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           G L+    L + M       A     LI     S R  +A +V         +P ++++ 
Sbjct: 70  GDLEEAIRLVESMAGLEPSAAGPCAALIKKLCASGRTAEARRVLAS-----CEPDVMSYN 124

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
            ++ G C+  ++D A +L    +    ++PD   + +LI+GLC  G    AL V ++M+R
Sbjct: 125 AMVAGYCVTGQLDNARRL----VAAMPMEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLR 180

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
                D   Y+ L+ A  K     +   +L EM+++GC P+ VTYN +++G C+E   + 
Sbjct: 181 RGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDD 240

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLC 339
           A   L  +   GC+ N +SYN++L GLC
Sbjct: 241 AMEFLKSLPSYGCEPNTVSYNIVLKGLC 268



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 98/184 (53%), Gaps = 14/184 (7%)

Query: 163 VVSRR--LEDAWKVFDEMVKRRLQPTLV-TFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           V+ RR  LE+A ++ + M    L+P+       LI  LC   R  EA ++      + + 
Sbjct: 65  VLVRRGDLEEAIRLVESMAG--LEPSAAGPCAALIKKLCASGRTAEARRV------LASC 116

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +PD   + +++ G C  G+L  A  +   M    +E D   Y++LI  L   GR +   A
Sbjct: 117 EPDVMSYNAMVAGYCVTGQLDNARRLVAAM---PMEPDTYTYNTLIRGLCGRGRTDNALA 173

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +L +M  RGC P+ VTY  L+   CK   ++ A  +LDEM DKGC  + ++YNV++ G+C
Sbjct: 174 VLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGIC 233

Query: 340 KDGK 343
           ++G+
Sbjct: 234 QEGR 237


>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
 gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
          Length = 844

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 159/338 (47%), Gaps = 43/338 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +L  Y LII  L ++K  D+ +++L Q+ +  TR  P  I + ++I  Y  + +   +++
Sbjct: 279 DLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTR--PNSITYNSLIHGYSISGMWNESVR 336

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
           +F +MSS  V  TV   N+ ++     G+ +  K +F  M  K   PD  SY+ ++HG  
Sbjct: 337 VFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYA 396

Query: 164 VSR-------------------------------------RLEDAWKVFDEMVKRRLQPT 186
            +                                       ++ A  +F++M  + + P 
Sbjct: 397 TATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPD 456

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
            VTF T+I  LC   R+D+AL  K + M    V P   V+  LI+G C  GEL  A  + 
Sbjct: 457 TVTFATVISSLCRIGRLDDALH-KFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELI 515

Query: 247 EEMVRDKIEMDAGIY-SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
            EM+   I      Y SS+I+ L K GR  E   I+  M + G +PN VT+N+L+ G+C 
Sbjct: 516 SEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCL 575

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             + E AF +LD M   G + N   Y  ++ G CK+G+
Sbjct: 576 VGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGR 613



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 132/265 (49%), Gaps = 3/265 (1%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P + +F  +I  Y R  ++++A+ +F++M +  +      F T+++     G+LD   
Sbjct: 418 IAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDAL 477

Query: 139 ELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT-FGTLIYG 196
             F  +++  V P    Y  LI GC     L  A ++  EM+ + + P  V  F ++I  
Sbjct: 478 HKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINN 537

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC E RV E   +  D+M     +P+   F SL++G C VG +  A  + + M    IE 
Sbjct: 538 LCKEGRVAEGKDIM-DMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEP 596

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +  IY +L+    K GR ++   + ++M  +G KP SV Y+ ++ G  +     AA  + 
Sbjct: 597 NCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMF 656

Query: 317 DEMGDKGCKANPISYNVILGGLCKD 341
            EM + G   +  +Y V+LGGLC++
Sbjct: 657 HEMIESGTTVSIHTYGVVLGGLCRN 681



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 143/296 (48%), Gaps = 4/296 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++++I    R  M D+   I   ++ +  ++P  + F  VI    R   L+ AL  F+ M
Sbjct: 425 FNILINAYARCGMMDKAMLIFEDMQ-NKGMIPDTVTFATVISSLCRIGRLDDALHKFNHM 483

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSY-NILIHGCVVSRR 167
               V  +   +  L+      G+L + KEL  ++M K + P    Y + +I+      R
Sbjct: 484 VDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGR 543

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           + +   + D MV+   +P +VTF +L+ G CL   ++EA  L  D M    ++P+  ++ 
Sbjct: 544 VAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALL-DAMASIGIEPNCYIYG 602

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +L+ G C  G +  AL V  +M+   ++  + +YS ++  LF+A R      +  EM E 
Sbjct: 603 TLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIES 662

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G   +  TY  ++ G C+    + A  +L+++     K + I++N+++  + K G+
Sbjct: 663 GTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGR 718



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERAL----QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           PK  I       +G A   +  L     +F+ M +  +      FN L+N    CG +D+
Sbjct: 381 PKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDK 440

Query: 137 MKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              +F+ M+ K + PD  ++  +I       RL+DA   F+ MV   + P+   +G LI 
Sbjct: 441 AMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQ 500

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C    + +A +L  ++M      P  + F+S+I  LC  G ++    + + MV+    
Sbjct: 501 GCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQR 560

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            +   ++SL+      G   E  A+L  M   G +PN   Y  L+ G+CK    + A T+
Sbjct: 561 PNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTV 620

Query: 316 LDEMGDKGCKANPISYNVILGGL 338
             +M  KG K   + Y++IL GL
Sbjct: 621 FRDMLHKGVKPTSVLYSIILHGL 643



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 136/303 (44%), Gaps = 45/303 (14%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKH--DTRIVPKEIIF-CNVIGFYGRARLLERALQMF 106
           +  +I+ L R    D+    LH+  H  D  + P E ++ C + G      L+ +A ++ 
Sbjct: 460 FATVISSLCRIGRLDDA---LHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELV-KAKELI 515

Query: 107 DEMSSFNVQM-TVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            EM + ++    VK+F++++N     G++   K++  +M +    P+  ++N L+ G  +
Sbjct: 516 SEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCL 575

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +E+A+ + D M    ++P    +GTL+ G C   R+D+AL +  D++    VKP   
Sbjct: 576 VGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLH-KGVKPTSV 634

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRD-------------------------------- 252
           +++ ++ GL      + A  +  EM+                                  
Sbjct: 635 LYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKL 694

Query: 253 ---KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
               ++ D   ++ +ISA+FK GR+ E   +   +   G  PN  TY+ +I+   KEE +
Sbjct: 695 FAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESY 754

Query: 310 EAA 312
           E A
Sbjct: 755 EEA 757



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 163/349 (46%), Gaps = 27/349 (7%)

Query: 3   TSSIRLACLPRLQKDPKLAL----QLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLG 58
           T +I + C  R+ + P L L    +L KN    P+D        F Y+L++  +   ++ 
Sbjct: 178 TYNILIDCYRRVHR-PDLGLAIVGRLLKN-GLGPDD--------FSYSLIYGFVKDGEVD 227

Query: 59  RAK-MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT 117
           +A  +F EM +          ++PK +I  ++I    + + +++A  +  +M    +   
Sbjct: 228 KAHCLFLEMME--------QGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPD 279

Query: 118 VKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFD 176
           +  ++ +++       +D+ + +  Q++E    P++ +YN LIHG  +S    ++ +VF 
Sbjct: 280 LFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFK 339

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
           +M    + PT+    + I+ L    R +EA K   D M +   KPD   +++++ G    
Sbjct: 340 QMSSCGVIPTVDNCNSFIHALFKHGRTNEA-KCIFDSMVLKGPKPDIISYSTMLHGYATA 398

Query: 237 GELSLA--LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
            +  LA    +   M+   I  +  +++ LI+A  + G  ++   I ++M+ +G  P++V
Sbjct: 399 TDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTV 458

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           T+  +IS  C+    + A    + M D G   +   Y  ++ G C  G+
Sbjct: 459 TFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGE 507



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 105/223 (47%), Gaps = 8/223 (3%)

Query: 127 PKLTCGKLDRMK-ELFQIMEKYVSPDAC-----SYNILIHGCVVSRRLEDAWKVFDEMVK 180
           P   CG    +  ELF+ M+++  P        +YNILI       R +    +   ++K
Sbjct: 145 PSAACGDAPALAIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLK 204

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
             L P   ++ +LIYG   +  VD+A  L  ++M    V P   +  S+IK LC + E+ 
Sbjct: 205 NGLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMME-QGVLPKILICNSIIKELCKMKEMD 262

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  + ++MV   I  D   YS +I  L K+   ++   +L++M E G +PNS+TYN+LI
Sbjct: 263 KAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLI 322

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            G+     +  +  +  +M   G      + N  +  L K G+
Sbjct: 323 HGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGR 365


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 122/227 (53%), Gaps = 8/227 (3%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFD 176
           +NT +N    C + D +    ++M+  V     PD  +YNI+++    + +LE+A  + +
Sbjct: 289 YNTFVNG--LC-QNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILN 345

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
           +MV R   P + TF TLI  LC   R++EAL L   +  V  V PD   F  LI  LC V
Sbjct: 346 QMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT-VKGVSPDVYTFNILINALCKV 404

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           G+  LAL + EEM       D   Y++LI  L   G+  +   +LK+M+  GC  +++TY
Sbjct: 405 GDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITY 464

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           N +I G CK+   E A  + D+M  +G   N I++N ++ GLCKD K
Sbjct: 465 NTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKK 511



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 126/242 (52%), Gaps = 2/242 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILIH 160
           AL++F+EM +         +NTL++   + GKL +  +L + ME    P    +YN +I 
Sbjct: 410 ALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIID 469

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     R+E+A +VFD+M  + +    +TF TLI GLC + ++D+A  L   ++    ++
Sbjct: 470 GLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMIS-EGLQ 528

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   + S++   C  G++  A  + E M  +  E+D   Y +LI+ L KAGR      +
Sbjct: 529 PNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKV 588

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L+ M+ +G +P    YN ++    +  +   A ++  EM + G   + ++Y ++  GLC+
Sbjct: 589 LRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCR 648

Query: 341 DG 342
            G
Sbjct: 649 GG 650



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 126/246 (51%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           LE A  + ++M        +  FNTL+    T  +L+   +L  Q+  K VSPD  ++NI
Sbjct: 337 LEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNI 396

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+          A ++F+EM      P  VT+ TLI  LC   ++ +AL L +D M   
Sbjct: 397 LINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKD-MEST 455

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
                   + ++I GLC    +  A  V ++M    I  +A  +++LI  L K  + ++ 
Sbjct: 456 GCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDA 515

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++ +M   G +PN++TYN++++ +CK+ D + A  IL+ M   G + + ++Y  ++ G
Sbjct: 516 FGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLING 575

Query: 338 LCKDGK 343
           LCK G+
Sbjct: 576 LCKAGR 581



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 145/288 (50%), Gaps = 11/288 (3%)

Query: 61  KMFDE-MQQILHQLKHDTRIVPKEIIF---CNVIGFYGRARLLERALQMFDEMSSFNVQM 116
           ++FD+ +  IL+QL+    I    +++    NV+    + +LLE    ++ EM +  ++ 
Sbjct: 123 QLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLE---SVYSEMGARGIKP 179

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVF 175
            V  FNTL+       ++     + + M  + V+PD  ++  L+ G V    +E A +V 
Sbjct: 180 DVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVK 239

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDIMRVYNVKPDGQVFASLIKGLC 234
             M++     T VT   LI G C   RV++AL  ++++I   +  +PD   + + + GLC
Sbjct: 240 ARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGF--EPDQITYNTFVNGLC 297

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
               +  AL V + MV++  + D   Y+ +++ L K G+  E   IL +M +RGC P+  
Sbjct: 298 QNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDIT 357

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           T+N LI+  C     E A  +  ++  KG   +  ++N+++  LCK G
Sbjct: 358 TFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVG 405



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 145/331 (43%), Gaps = 43/331 (12%)

Query: 13  RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ 72
           R Q DP  AL++  N     +D    P          Y+ II KLG     D M+ ++ +
Sbjct: 49  REQPDPDAALRML-NAALARDDFAPGPEV--------YEEIIRKLGAVGALDLMKVLVAE 99

Query: 73  LKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132
           ++ +   V   ++   +  + G+        Q+FD+                        
Sbjct: 100 MRREGHQVKLGVVHSFLDSYEGQ--------QLFDDAVDL-------------------- 131

Query: 133 KLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
            L++++ LF I       D   YN L++  V   +++    V+ EM  R ++P +VTF T
Sbjct: 132 ILNQLQPLFGI-----QADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNT 186

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           L+  LC   +V  A+ + E+ M    V PD   F +L++G    G +  AL VK  M+  
Sbjct: 187 LMKALCRAHQVRTAVLMLEE-MSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEM 245

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
                    + LI+   K GR  +    +++    G +P+ +TYN  ++G C+ +    A
Sbjct: 246 GCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHA 305

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             ++D M  +G   +  +YN+++  LCK+G+
Sbjct: 306 LKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQ 336



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 137/284 (48%), Gaps = 11/284 (3%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           ++F+EM+        ++   P E+ +  +I        L +AL +  +M S     +   
Sbjct: 412 RLFEEMK--------NSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTIT 463

Query: 121 FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +NT+++      +++  +E+F  M+ + +S +A ++N LI G    ++++DA+ + ++M+
Sbjct: 464 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMI 523

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
              LQP  +T+ +++   C +  + +A  + E  M     + D   + +LI GLC  G  
Sbjct: 524 SEGLQPNNITYNSILTHYCKQGDIKKAADILE-TMTANGFEVDVVTYGTLINGLCKAGRT 582

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
            +AL V   M    +      Y+ ++ +LF+     +  ++ +EM E G  P+++TY  +
Sbjct: 583 QVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIV 642

Query: 300 ISGFCKEED-FEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             G C+     + AF  + EM DKG      S+ ++  GL   G
Sbjct: 643 FRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLG 686


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 121/227 (53%), Gaps = 8/227 (3%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFD 176
           +NT +N    C   D +    ++M+  V     PD  +YNI+++    + +LE+A  + +
Sbjct: 197 YNTFVNG--LCQN-DHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILN 253

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
           +MV R   P + TF TLI  LC   R++EAL L   +  V  V PD   F  LI  LC V
Sbjct: 254 QMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT-VKGVSPDVYTFNILINALCKV 312

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           G+  LAL + EEM       D   Y++LI  L   G+  +   +LK+M+  GC  +++TY
Sbjct: 313 GDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITY 372

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           N +I G CK+   E A  + D+M  +G   N I++N ++ GLCKD K
Sbjct: 373 NTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKK 419



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 127/242 (52%), Gaps = 2/242 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILIH 160
           AL++F+EM +         +NTL++   + GKL +  +L + ME    P    +YN +I 
Sbjct: 318 ALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIID 377

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     R+E+A +VFD+M  + +    +TF TLI GLC + ++D+A +L   ++    ++
Sbjct: 378 GLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMIS-EGLQ 436

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   + S++   C  G++  A  + E M  +  E+D   Y +LI+ L KAGR      +
Sbjct: 437 PNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKV 496

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L+ M+ +G +P    YN ++    +  +   A ++  EM + G   + ++Y ++  GLC+
Sbjct: 497 LRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCR 556

Query: 341 DG 342
            G
Sbjct: 557 GG 558



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 143/290 (49%), Gaps = 10/290 (3%)

Query: 58  GRAKMFDEMQQILHQLKHDTRIVPKEIIF---CNVIGFYGRARLLERALQMFDEMSSFNV 114
           G+    D +  IL+QL+    I    +++    NV+    + +LLE    ++ EM +  +
Sbjct: 29  GQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLE---SVYSEMGARGI 85

Query: 115 QMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWK 173
           +  V  FNTL+       ++     + + M  + V+PD  ++  L+ G V    +E A +
Sbjct: 86  KPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALR 145

Query: 174 VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDIMRVYNVKPDGQVFASLIKG 232
           V   M++     T VT   LI G C   RV++AL  ++++I   +  +PD   + + + G
Sbjct: 146 VKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGF--EPDQITYNTFVNG 203

Query: 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
           LC    +  AL V + MV++  + D   Y+ +++ L K G+  E   IL +M +RGC P+
Sbjct: 204 LCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPD 263

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             T+N LI+  C     E A  +  ++  KG   +  ++N+++  LCK G
Sbjct: 264 ITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVG 313



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 126/246 (51%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           LE A  + ++M        +  FNTL+    T  +L+   +L  Q+  K VSPD  ++NI
Sbjct: 245 LEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNI 304

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+          A ++F+EM      P  VT+ TLI  LC   ++ +AL L +D M   
Sbjct: 305 LINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKD-MEST 363

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
                   + ++I GLC    +  A  V ++M    I  +A  +++LI  L K  + ++ 
Sbjct: 364 GCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDA 423

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++ +M   G +PN++TYN++++ +CK+ D + A  IL+ M   G + + ++Y  ++ G
Sbjct: 424 FELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLING 483

Query: 338 LCKDGK 343
           LCK G+
Sbjct: 484 LCKAGR 489



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 105/210 (50%), Gaps = 6/210 (2%)

Query: 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           L++++ LF I       D   YN L++  V   +++    V+ EM  R ++P +VTF TL
Sbjct: 41  LNQLQPLFGI-----QADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTL 95

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           +  LC   +V  A+ + E+ M    V PD   F +L++G    G +  AL VK  M+   
Sbjct: 96  MKALCRAHQVRTAVLMLEE-MSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMG 154

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
                   + LI+   K GR  +    +++    G +P+ +TYN  ++G C+ +    A 
Sbjct: 155 CSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHAL 214

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ++D M  +G   +  +YN+++  LCK+G+
Sbjct: 215 KVMDVMVQEGHDPDVFTYNIVVNCLCKNGQ 244



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 138/284 (48%), Gaps = 11/284 (3%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           ++F+EM+        ++   P E+ +  +I        L +AL +  +M S     +   
Sbjct: 320 RLFEEMK--------NSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTIT 371

Query: 121 FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +NT+++      +++  +E+F  M+ + +S +A ++N LI G    ++++DA+++ ++M+
Sbjct: 372 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMI 431

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
              LQP  +T+ +++   C +  + +A  + E  M     + D   + +LI GLC  G  
Sbjct: 432 SEGLQPNNITYNSILTHYCKQGDIKKAADILE-TMTANGFEVDVVTYGTLINGLCKAGRT 490

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
            +AL V   M    +      Y+ ++ +LF+     +  ++ +EM E G  P+++TY  +
Sbjct: 491 QVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIV 550

Query: 300 ISGFCKEED-FEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             G C+     + AF  + EM DKG      S+ ++  GL   G
Sbjct: 551 FRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLG 594


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 162/323 (50%), Gaps = 3/323 (0%)

Query: 21  ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
           AL  +KN N   N       K  R N++ Y+ +I  L     + +  ++L  +  + +I 
Sbjct: 264 ALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI-ERKIN 322

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  +I  + +   L  A +++DEM   ++   +  +++L+N      +LD  K +
Sbjct: 323 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F++M  K   P+  +YN LI G   ++R+E+  ++F EM +R L    VT+ TLI GL  
Sbjct: 383 FELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 442

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
               D A K+ +  M    V PD   ++ L+ GLC  G+L  AL V E + + K+E D  
Sbjct: 443 AGDCDMAQKIFKK-MVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIY 501

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+ +I  + KAG+  +   +   +  +G KPN + Y  +ISGFC++   E A  +  EM
Sbjct: 502 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 561

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
            + G   N  +YN ++    +DG
Sbjct: 562 KEDGTLPNSGTYNTLIRARLRDG 584



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 153/299 (51%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L  Y  ++  L +    D    +L +++   +I    +I+  +I      + +  AL +
Sbjct: 219 DLFTYGTVVNGLCKRGDIDLALSLLKKMEKG-KIEADVVIYTTIIDALCNYKNVNDALNL 277

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           F EM +  ++  V  +N+L+      G+  D  + L  ++E+ ++P+  +++ LI   V 
Sbjct: 278 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 337

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L +A K++DEM+KR + P + T+ +LI G C+  R+DEA  + E +M   +  P+  
Sbjct: 338 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE-LMISKDCFPNVV 396

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LIKG C    +   + +  EM +  +  +   Y++LI  LF+AG  +    I K+M
Sbjct: 397 TYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM 456

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  P+ +TY+ L+ G CK    E A  + + +     + +  +YN+++ G+CK GK
Sbjct: 457 VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGK 515



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 130/266 (48%), Gaps = 4/266 (1%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F  +I G +   +  E A+ + D M +   Q  +  + T++N     G +D    
Sbjct: 183 PNTVTFNTLIHGLFLHNKASE-AVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALS 241

Query: 140 LFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L + MEK  +  D   Y  +I      + + DA  +F EM  + ++P +VT+ +LI  LC
Sbjct: 242 LLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 301

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              R  +A +L  D++    + P+   F++LI      G+L  A  + +EM++  I+ D 
Sbjct: 302 NYGRWSDASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             YSSLI+      R +E   + + M  + C PN VTYN LI GFCK +  E    +  E
Sbjct: 361 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFRE 420

Query: 319 MGDKGCKANPISYNVILGGLCKDGKC 344
           M  +G   N ++YN ++ GL + G C
Sbjct: 421 MSQRGLVGNTVTYNTLIQGLFQAGDC 446



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 123/246 (50%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           L+ A+ +F EM       ++  FN LL+      K D +  L + M+   +S D  SYNI
Sbjct: 61  LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+      +L  A  V  +M+K   +P +VT  +L+ G C   R+ EA+ L  D M V 
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALV-DQMFVM 179

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             +P+   F +LI GL    + S A+ + + MV    + D   Y ++++ L K G  +  
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            ++LK+M++   + + V Y  +I   C  ++   A  +  EM +KG + N ++YN ++  
Sbjct: 240 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 299

Query: 338 LCKDGK 343
           LC  G+
Sbjct: 300 LCNYGR 305



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 103/214 (48%), Gaps = 6/214 (2%)

Query: 132 GKLDRMKELFQIMEKYVSPDACSYNI---LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
            +L +   LF +   Y S  A SY+    L    ++  +L+DA  +F EMV+ R  P++V
Sbjct: 24  AQLRKASPLFSLRGVYFS--AASYDYREKLSRNVLLDLKLDDAVDLFGEMVQSRPLPSIV 81

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
            F  L+  +    + D  + L E  M+   +  D   +  LI   C   +L LAL V  +
Sbjct: 82  EFNKLLSAIAKMNKFDLVISLGER-MQNLRISYDLYSYNILINCFCRRSQLPLALAVLGK 140

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M++   E D    SSL++      R +E  A++ +M     +PN+VT+N LI G      
Sbjct: 141 MMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNK 200

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
              A  ++D M  +GC+ +  +Y  ++ GLCK G
Sbjct: 201 ASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRG 234


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 122/227 (53%), Gaps = 8/227 (3%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFD 176
           +NT +N    C + D +    ++M+  V     PD  +YNI+++    + +LE+A  + +
Sbjct: 289 YNTFVNG--LC-QNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILN 345

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
           +MV R   P + TF TLI  LC   R++EAL L   +  V  V PD   F  LI  LC V
Sbjct: 346 QMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT-VKGVSPDVYTFNILINALCKV 404

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           G+  LAL + EEM       D   Y++LI  L   G+  +   +LK+M+  GC  +++TY
Sbjct: 405 GDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITY 464

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           N +I G CK+   E A  + D+M  +G   N I++N ++ GLCKD K
Sbjct: 465 NTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKK 511



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 128/242 (52%), Gaps = 2/242 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC-SYNILIH 160
           AL++F+EM +         +NTL++   + GKL +  +L + ME    P +  +YN +I 
Sbjct: 410 ALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIID 469

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     R+E+A +VFD+M  + +    +TF TLI GLC + ++D+A +L   ++    ++
Sbjct: 470 GLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMIS-EGLQ 528

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   + S++   C  G++  A  + E M  +  E+D   Y +LI+ L KAGR      +
Sbjct: 529 PNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKV 588

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L+ M+ +G +P    YN ++    +  +   A ++  EM + G   + ++Y ++  GLC+
Sbjct: 589 LRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCR 648

Query: 341 DG 342
            G
Sbjct: 649 GG 650



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 145/288 (50%), Gaps = 11/288 (3%)

Query: 61  KMFDE-MQQILHQLKHDTRIVPKEIIF---CNVIGFYGRARLLERALQMFDEMSSFNVQM 116
           ++FD+ +  IL+QL+    I    +++    NV+    + +LLE    ++ EM +  ++ 
Sbjct: 123 QLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLE---SVYSEMGARGIKP 179

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVF 175
            V  FNTL+       ++     + + M  + V+PD  ++  L+ G V    +E A +V 
Sbjct: 180 DVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVK 239

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDIMRVYNVKPDGQVFASLIKGLC 234
             M++     T VT   LI G C   RV++AL  ++++I   +  +PD   + + + GLC
Sbjct: 240 ARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGF--EPDQITYNTFVNGLC 297

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
               +  AL V + MV++  + D   Y+ +++ L K G+  E   IL +M +RGC P+  
Sbjct: 298 QNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDIT 357

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           T+N LI+  C     E A  +  ++  KG   +  ++N+++  LCK G
Sbjct: 358 TFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVG 405



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 126/246 (51%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           LE A  + ++M        +  FNTL+    T  +L+   +L  Q+  K VSPD  ++NI
Sbjct: 337 LEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNI 396

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+          A ++F+EM      P  VT+ TLI  LC   ++ +AL L +D M   
Sbjct: 397 LINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKD-MEST 455

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
                   + ++I GLC    +  A  V ++M    I  +A  +++LI  L K  + ++ 
Sbjct: 456 GCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDA 515

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++ +M   G +PN++TYN++++ +CK+ D + A  IL+ M   G + + ++Y  ++ G
Sbjct: 516 FELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLING 575

Query: 338 LCKDGK 343
           LCK G+
Sbjct: 576 LCKAGR 581



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 145/331 (43%), Gaps = 43/331 (12%)

Query: 13  RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ 72
           R Q DP  AL++  N     +D    P          Y+ II KLG     D M+ ++ +
Sbjct: 49  REQPDPDAALRML-NAALARDDFAPGPEV--------YEEIIRKLGAVGALDLMKVLVAE 99

Query: 73  LKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132
           ++ +   V   ++   +  + G+        Q+FD+                        
Sbjct: 100 MRREGHQVKLGVVHSFLDSYEGQ--------QLFDDAVDL-------------------- 131

Query: 133 KLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
            L++++ LF I       D   YN L++  V   +++    V+ EM  R ++P +VTF T
Sbjct: 132 ILNQLQPLFGI-----QADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNT 186

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           L+  LC   +V  A+ + E+ M    V PD   F +L++G    G +  AL VK  M+  
Sbjct: 187 LMKALCRAHQVRTAVIMLEE-MSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEM 245

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
                    + LI+   K GR  +    +++    G +P+ +TYN  ++G C+ +    A
Sbjct: 246 GCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHA 305

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             ++D M  +G   +  +YN+++  LCK+G+
Sbjct: 306 LKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQ 336



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 138/284 (48%), Gaps = 11/284 (3%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           ++F+EM+        ++   P E+ +  +I        L +AL +  +M S     +   
Sbjct: 412 RLFEEMK--------NSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTIT 463

Query: 121 FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +NT+++      +++  +E+F  M+ + +S +A ++N LI G    ++++DA+++ ++M+
Sbjct: 464 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMI 523

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
              LQP  +T+ +++   C +  + +A  + E  M     + D   + +LI GLC  G  
Sbjct: 524 SEGLQPNNITYNSILTHYCKQGDIKKAADILE-TMTANGFEVDVVTYGTLINGLCKAGRT 582

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
            +AL V   M    +      Y+ ++ +LF+     +  ++ +EM E G  P+++TY  +
Sbjct: 583 QVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIV 642

Query: 300 ISGFCKEED-FEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             G C+     + AF  + EM DKG      S+ ++  GL   G
Sbjct: 643 FRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLG 686


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 164/308 (53%), Gaps = 6/308 (1%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           +D +   LKP RY      L++ K+G++    E +++L ++    +I+P  +++  +I  
Sbjct: 317 DDMQIKGLKPNRYTYNSIILLLCKIGKSF---EAEKVLREMM-SQKIIPDNVVYTTLIHG 372

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPD 151
           + +   +  A + FDEM S  +      + TL+      GK+   + LF +++ + + PD
Sbjct: 373 FFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPD 432

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +Y  LI     +  + +A+ + +EMV+  + P +VT+G LI GLC    +D A +L +
Sbjct: 433 EVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLD 492

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           + MR   ++ +  ++ S++ G+C  G +  A+ + +EM    I+ DA  Y+++I A  + 
Sbjct: 493 E-MRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRL 551

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G  ++   +L+EM +RG +P  VT+N L++GFC     E    +L  M +KG   + I+Y
Sbjct: 552 GDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITY 611

Query: 332 NVILGGLC 339
           N ++   C
Sbjct: 612 NTLMKQHC 619



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 160/334 (47%), Gaps = 38/334 (11%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +N   Y++II  L R     E  ++L Q+   +   P  + +  VI  Y     L++AL+
Sbjct: 256 WNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSS-TPDVVSYSTVIDGYCHLGELKKALK 314

Query: 105 MFDEMS-----------------------SFNVQMTVK------------FFNTLLNPKL 129
           + D+M                        SF  +  ++             + TL++   
Sbjct: 315 LMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFF 374

Query: 130 TCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
             G +    + F +++ K +SPD  +Y  LI G     ++ +   +F EM+ R L+P  V
Sbjct: 375 KLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEV 434

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           T+ TLI   C    +  A  L  +++++  + P+   + +LI GLC  GEL  A  + +E
Sbjct: 435 TYTTLIDVYCKAGEMVNAFSLHNEMVQM-GMTPNIVTYGALIDGLCKHGELDTANELLDE 493

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M +  ++++  IY+S+++ + KAG   +   ++KEM+  G  P+++TY  +I  +C+  D
Sbjct: 494 MRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGD 553

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            + A  +L EM D+G +   +++NV++ G C  G
Sbjct: 554 IDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLG 587



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 123/246 (50%), Gaps = 5/246 (2%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           +E A+++F E   + +      +N ++      GK+     L   M+ +  +PD  SY+ 
Sbjct: 242 IEMAIKVFCE---YGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYST 298

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I G      L+ A K+ D+M  + L+P   T+ ++I  LC   +  EA K+  ++M   
Sbjct: 299 VIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMS-Q 357

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + PD  V+ +LI G   +G +  A    +EM+  KI  D   Y++LI    + G+  E 
Sbjct: 358 KIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEP 417

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +  EM  RG KP+ VTY  LI  +CK  +   AF++ +EM   G   N ++Y  ++ G
Sbjct: 418 QNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDG 477

Query: 338 LCKDGK 343
           LCK G+
Sbjct: 478 LCKHGE 483



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 134/295 (45%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I   G+     E Q + H++     + P E+ +  +I  Y +A  +  A  + +EM
Sbjct: 401 YTTLIQGFGQGGKVIEPQNLFHEMI-SRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEM 459

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
               +   +  +  L++     G+LD   EL   M K  +  + C YN +++G   +  +
Sbjct: 460 VQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNI 519

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E A K+  EM    + P  +T+ T+I   C    +D+A KL ++++    ++P    F  
Sbjct: 520 EQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLD-RGLQPTVVTFNV 578

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ G C +G L     +   M+   I  DA  Y++L+         N    I K M+ +G
Sbjct: 579 LMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQG 638

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             P+S TYN LI G CK  + + A+ +  EM +KG      SYN ++    K  K
Sbjct: 639 VAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRK 693



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 2/245 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           L+ A ++ DEM    +Q+ V  +N+++N     G +++  +L + ME   + PDA +Y  
Sbjct: 484 LDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTT 543

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I        ++ A K+  EM+ R LQPT+VTF  L+ G C+   +++  +L    M   
Sbjct: 544 VIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLL-GWMLEK 602

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + PD   + +L+K  C    ++    + + M    +  D+  Y+ LI    KA    E 
Sbjct: 603 GIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEA 662

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + KEM E+G  P   +YNALI  F K+  F  A  + +EM   G  A+   YN  +  
Sbjct: 663 WFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDM 722

Query: 338 LCKDG 342
             ++G
Sbjct: 723 CYEEG 727



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 130/278 (46%), Gaps = 3/278 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L +    D   ++L +++    +     I+ +++    +A  +E+A+++
Sbjct: 467 NIVTYGALIDGLCKHGELDTANELLDEMRKKG-LQLNVCIYNSMVNGICKAGNIEQAIKL 525

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
             EM    +      + T+++     G +D+  +L Q ++++ + P   ++N+L++G  +
Sbjct: 526 MKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCM 585

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              LED  ++   M+++ + P  +T+ TL+   C+   ++   K+ +  MR   V PD  
Sbjct: 586 LGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKR-MRNQGVAPDSN 644

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LIKG C    L  A  + +EM+          Y++LI   +K  +  E   + +EM
Sbjct: 645 TYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEM 704

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           +  G   +   YN  +    +E D E    + DE  +K
Sbjct: 705 RGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIEK 742


>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 721

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 160/308 (51%), Gaps = 6/308 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL--KHDTRIVPKEIIFCNVIGFYGRARL 98
           K F +N   Y +++  LGR K  +  +  L+ +  + +  +  ++  F ++I  YG A L
Sbjct: 111 KGFSHNPQTYFIMLEILGREKNLNIARNFLYSIEKRSNGEVKLEDRFFNSLIRSYGEAGL 170

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY--VSPDACSYN 156
            + ++++F+ M    V   V  FN++L   L  G+ +  KE++  M K   V PD  +YN
Sbjct: 171 FKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEMLKTYGVKPDTYTYN 230

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM-R 215
           ILI G   +  +++ +  F EM      P +VT+ TL+ GLC   ++  A  L   +  +
Sbjct: 231 ILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKK 290

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
             ++ PD   + +LI+G C   E+  AL + EEM    ++ +   Y++LI  L +A + +
Sbjct: 291 CKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWD 350

Query: 276 EFPAILKEMK-ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +   IL++MK + G  P++ T+N LI+  C   + + AF + + M      A+  SY+V+
Sbjct: 351 KMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVL 410

Query: 335 LGGLCKDG 342
           +  LC+ G
Sbjct: 411 IRTLCQKG 418



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 143/301 (47%), Gaps = 14/301 (4%)

Query: 52  LIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111
           L++ K GR  M    +++  ++     + P    +  +I  + +  +++     F EM+S
Sbjct: 198 LVLLKRGRTNM---AKEVYDEMLKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTS 254

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY---VSPDACSYNILIHGCVVSRRL 168
           F+    V  +NTL++     GK+     L   M K    +SPD  +Y  LI G    + +
Sbjct: 255 FDCDPDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEV 314

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           ++A  + +EM  R L+P +VT+ TLI GLC   + D+  ++ E +       PD   F +
Sbjct: 315 DEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNT 374

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER- 287
           LI   C  G L  A  V E M + ++  D+  YS LI  L + G   +   +  E+ E+ 
Sbjct: 375 LINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFEKE 434

Query: 288 ------GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
                 G KP + +Y  +    C+    + A  +L ++  +G + +P+SY +++ G CK+
Sbjct: 435 ILLSSYGPKPLAASYKCMFQYLCENGKTKKAERVLRQLMKRGTQ-DPLSYQIVILGHCKE 493

Query: 342 G 342
           G
Sbjct: 494 G 494



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 103/192 (53%), Gaps = 4/192 (2%)

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           +N LI     +   +++ K+F+ M    + P +VTF +++  L    R + A ++ ++++
Sbjct: 158 FNSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEML 217

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           + Y VKPD   +  LI+G C    +       +EM     + D   Y++L+  L +AG+ 
Sbjct: 218 KTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRAGKI 277

Query: 275 NEFPAILKEMKERGCK---PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
                ++  M ++ CK   P+ VTY  LI G+C++++ + A  IL+EM  +G K N ++Y
Sbjct: 278 KVAHNLVNGMSKK-CKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVTY 336

Query: 332 NVILGGLCKDGK 343
           N ++ GLC+  K
Sbjct: 337 NTLIKGLCEAQK 348



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 126/300 (42%), Gaps = 45/300 (15%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-IVPKEIIFCNVIGFYGRARLLERALQ 104
           +++ Y+ ++  L RA        +++ +    + + P  + +  +I  Y R + ++ AL 
Sbjct: 260 DVVTYNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALD 319

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM--EKYVSPDACSYNILIHGC 162
           + +EM+   ++  +  +NTL+       K D+MKE+ + M  +    PDAC++N LI+  
Sbjct: 320 ILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSH 379

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC-------LELRVDEALKLKEDIMR 215
             +  L++A+KVF+ M K  +     ++  LI  LC        E+  DE  + KE ++ 
Sbjct: 380 CCAGNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFE-KEILLS 438

Query: 216 VYNVKP----------------------------------DGQVFASLIKGLCAVGELSL 241
            Y  KP                                  D   +  +I G C  G    
Sbjct: 439 SYGPKPLAASYKCMFQYLCENGKTKKAERVLRQLMKRGTQDPLSYQIVILGHCKEGSYEN 498

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
             G+   M+R     D  IY  LI    +  +       L++M +   KP + T++++++
Sbjct: 499 GYGLLVWMLRRDFLPDIDIYDYLIDGFLRKDKPLLAKETLEKMLKSSYKPQTSTWHSILN 558



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 1/126 (0%)

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           VK + + F SLI+     G    ++ + E M    +      ++S++  L K GR N   
Sbjct: 151 VKLEDRFFNSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAK 210

Query: 279 AILKEM-KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            +  EM K  G KP++ TYN LI GFCK    +  F    EM    C  + ++YN ++ G
Sbjct: 211 EVYDEMLKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDG 270

Query: 338 LCKDGK 343
           LC+ GK
Sbjct: 271 LCRAGK 276



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 119/261 (45%), Gaps = 13/261 (4%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP   N++ Y+ +I  L  A+ +D+M++IL Q+K D   +P    F  +I  +  A  L
Sbjct: 329 LKP---NIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNL 385

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYV-------SPD 151
           + A ++F+ M    V      ++ L+      G   + + LF ++ EK +        P 
Sbjct: 386 DEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFEKEILLSSYGPKPL 445

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
           A SY  +      + + + A +V  +++KR  Q  L ++  +I G C E   +    L  
Sbjct: 446 AASYKCMFQYLCENGKTKKAERVLRQLMKRGTQDPL-SYQIVILGHCKEGSYENGYGLLV 504

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            ++R  +  PD  ++  LI G     +  LA    E+M++   +     + S+++ L + 
Sbjct: 505 WMLR-RDFLPDIDIYDYLIDGFLRKDKPLLAKETLEKMLKSSYKPQTSTWHSILNRLLEQ 563

Query: 272 GRKNEFPAILKEMKERGCKPN 292
           G  +E   ++  M ER  + N
Sbjct: 564 GCVHESAGVIVMMLERNIRQN 584


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 163/344 (47%), Gaps = 20/344 (5%)

Query: 5   SIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFD 64
           SI    + R   DP L L+ F+        +  H      +N   YDL++  L +  + D
Sbjct: 77  SIAFEVIKRFS-DPLLGLKFFEF-------SRTHLSINHTFN--TYDLLMRNLCKVGLND 126

Query: 65  EMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124
             + +   ++ D  I+P   I   ++  Y R   L+ A    +E+  + ++++   +N L
Sbjct: 127 SAKIVFDCMRSDG-ILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNL 185

Query: 125 LNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
           LN  +    +D    LF + +E Y  PD  S+NILI G      ++ A++ F  M     
Sbjct: 186 LNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGC 245

Query: 184 QPTLVTFGTLIYGLCLELRVDEALK----LKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
            P +V++ TLI G C   RV+E  K    LKED M +  V PD   + S+I G C +G++
Sbjct: 246 FPDIVSYNTLINGFC---RVNEISKGHDLLKED-MLIKGVSPDVITYTSIISGYCKLGDM 301

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A  + +EMV   I+ +   ++ LI    K G       + ++M   GC P+ VT+ +L
Sbjct: 302 KAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSL 361

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I G+C+E +      + +EM  +    N  +Y V++  LCK+ +
Sbjct: 362 IDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENR 405



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 148/315 (46%), Gaps = 11/315 (3%)

Query: 33  NDTEAHPLK--PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI 90
           N+   + +K  PF YN L     +  L +  + DE   +L +   +   VP    F  +I
Sbjct: 168 NEVHCYGIKVSPFVYNNL-----LNMLVKQNLVDE-AVLLFREHLEPYFVPDVYSFNILI 221

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYV 148
               R   +++A + F  M +F     +  +NTL+N      ++ +  +L +  ++ K V
Sbjct: 222 RGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGV 281

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           SPD  +Y  +I G      ++ A ++FDEMV   ++P   TF  LI G      +  A+ 
Sbjct: 282 SPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMV 341

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           + E  M +    PD   F SLI G C  GE++  L + EEM    +  +   Y+ LI+AL
Sbjct: 342 MYEK-MLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINAL 400

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K  R  E    L+ +K     P    YN +I GFCK    + A  I+ EM +K C+ + 
Sbjct: 401 CKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDK 460

Query: 329 ISYNVILGGLCKDGK 343
           I++ +++ G C  G+
Sbjct: 461 ITFTILIIGNCMKGR 475



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 112/273 (41%), Gaps = 41/273 (15%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I    R     +   +L +      + P  I + ++I  Y +   ++ A ++
Sbjct: 248 DIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASEL 307

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHG 161
           FDEM S  ++     FN L++     GK+  M+    + EK +     PD  ++  LI G
Sbjct: 308 FDEMVSSGIKPNDFTFNVLID---GFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDG 364

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA------LKLKEDIMR 215
                 +    K+++EM  R L P + T+  LI  LC E R+ EA      LK  E + +
Sbjct: 365 YCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPK 424

Query: 216 --VYN--------------------------VKPDGQVFASLIKGLCAVGELSLALGVKE 247
             +YN                           +PD   F  LI G C  G +  A+    
Sbjct: 425 PFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFY 484

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           +M+      D    +SLIS L KAG  NE   I
Sbjct: 485 KMIEINCVPDEITINSLISCLLKAGMPNEASQI 517


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 155/298 (52%), Gaps = 4/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y +++        F +M  + H +  D  IV     F  +I  + +  +++ A+ +
Sbjct: 403 DLVSYSILLHGYATEGRFADMNNLFHSMA-DKGIVANCHCFNILISAHAKRGMMDEAMLV 461

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           F EM    V+  V  ++TL++     G+L D M++  Q++   + P+   Y+ LIHG  +
Sbjct: 462 FTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCM 521

Query: 165 SRRLEDAWKVFDEMVKRRL-QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              L  A ++  EM+ + + +P +V F ++I+ LC E RV +A  +   ++ + + +P  
Sbjct: 522 HGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGD-RPTI 580

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             F SLI G C VG++  A GV + MV   IE D   Y++L+S   K+G+ ++   + +E
Sbjct: 581 VTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFRE 640

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           M  +  KP +VTY+ ++ G        AA  +  EM D G   +  +Y ++L GLC++
Sbjct: 641 MLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRN 698



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 157/335 (46%), Gaps = 39/335 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ I+  L +A+  D+ + +L Q+  D  + P  + +  +I  Y  +   + + +M
Sbjct: 298 DVVTYNSIVDALCKARAMDKAELVLRQMV-DKGVEPDGLTYTAIIHGYSCSGHWKESAKM 356

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           F +M+S  +   +  FN+ ++     G+    +E+FQ M  K   PD  SY+IL+HG   
Sbjct: 357 FRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYAT 416

Query: 165 SRRLED-----------------------------------AWKVFDEMVKRRLQPTLVT 189
             R  D                                   A  VF EM  + ++P +VT
Sbjct: 417 EGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVT 476

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           + TLI   C   R+ +A++    ++ +  ++P+  V+ SLI G C  G+L  A  +  EM
Sbjct: 477 YSTLISAFCRMGRLADAMEKFSQMISI-GLEPNTVVYHSLIHGFCMHGDLVKAKELVSEM 535

Query: 250 VRDKIEM-DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           +   I   +   +SS+I +L   GR  +   +   +   G +P  VT+N+LI G+C    
Sbjct: 536 MSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGK 595

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            E AF +LD M   G + + ++YN ++ G CK GK
Sbjct: 596 MEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGK 630



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 148/293 (50%), Gaps = 4/293 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++++I+   +  M DE   +  +++    + P  + +  +I  + R   L  A++ F +M
Sbjct: 442 FNILISAHAKRGMMDEAMLVFTEMQ-GQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQM 500

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYV-SPDACSYNILIHGCVVSRR 167
            S  ++     +++L++     G L + KEL  ++M K +  P+   ++ +IH      R
Sbjct: 501 ISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGR 560

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           + DA  VF+ ++    +PT+VTF +LI G CL  ++++A  + + ++ V  ++PD   + 
Sbjct: 561 VMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSV-GIEPDVVTYN 619

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +L+ G C  G++   L +  EM+  K++     YS ++  LF AGR +    +  EM + 
Sbjct: 620 TLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDS 679

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           G   +  TY  L+ G C+ +  + A T+  ++G   CK +    N ++  L K
Sbjct: 680 GTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYK 732



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 134/289 (46%), Gaps = 5/289 (1%)

Query: 56  KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ 115
           K GR+K  +E+ Q +    H   +V   I+   + G+    R  +    +F  M+   + 
Sbjct: 381 KHGRSKDAEEIFQYMTTKGHMPDLVSYSIL---LHGYATEGRFADMN-NLFHSMADKGIV 436

Query: 116 MTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKV 174
                FN L++     G +D    +F  M+ + V PD  +Y+ LI       RL DA + 
Sbjct: 437 ANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEK 496

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
           F +M+   L+P  V + +LI+G C+   + +A +L  ++M     +P+   F+S+I  LC
Sbjct: 497 FSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLC 556

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
             G +  A  V   ++          ++SLI      G+  +   +L  M   G +P+ V
Sbjct: 557 NEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVV 616

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           TYN L+SG+CK    +    +  EM  K  K   ++Y+++L GL   G+
Sbjct: 617 TYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGR 665



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 114/229 (49%), Gaps = 12/229 (5%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYV------SPDACSYNILIHGCVVSRRLEDAWKV 174
           +NT++  K  CG   R +E   ++++        SPD  S+N +IHG      +  A  +
Sbjct: 230 YNTVI--KSLCGD-SRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNL 286

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA-LKLKEDIMRVYNVKPDGQVFASLIKGL 233
            +EMV++ ++P +VT+ +++  LC    +D+A L L++ + +   V+PDG  + ++I G 
Sbjct: 287 INEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDK--GVEPDGLTYTAIIHGY 344

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
              G    +  +  +M    +      ++S +S+L K GR  +   I + M  +G  P+ 
Sbjct: 345 SCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDL 404

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           V+Y+ L+ G+  E  F     +   M DKG  AN   +N+++    K G
Sbjct: 405 VSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRG 453



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 126/267 (47%), Gaps = 10/267 (3%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F ++I       R+++ A  +F+ +     + T+  FN+L++     GK   M++
Sbjct: 543 PNIVFFSSIIHSLCNEGRVMD-AHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGK---MEK 598

Query: 140 LFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
            F +++  VS    PD  +YN L+ G   S +++D   +F EM+ ++++PT VT+  ++ 
Sbjct: 599 AFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLD 658

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           GL    R   A K+  +++       D   +  L+KGLC       A+ +  ++     +
Sbjct: 659 GLFHAGRTSAAKKMFHEMID-SGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCK 717

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D  I +++I+AL+K  R+ E   +   +   G  PN  TY  +I    KE   E A T+
Sbjct: 718 FDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTM 777

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
              M   GC  +    N I+  L + G
Sbjct: 778 FSSMEKSGCAPSSRLLNDIIRMLLQKG 804



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 102/212 (48%), Gaps = 9/212 (4%)

Query: 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR--RLQPTLVTFG 191
           L RM +L  +      P+A SYN +I       R ++A  +   M K   R  P +V+F 
Sbjct: 215 LHRMSDLGCV------PNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFN 268

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           T+I+G   +  V +A  L  ++++   V+PD   + S++  LC    +  A  V  +MV 
Sbjct: 269 TVIHGFFKQGEVSKACNLINEMVQ-KGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVD 327

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
             +E D   Y+++I     +G   E   + ++M  +G  P  VT+N+ +S  CK    + 
Sbjct: 328 KGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKD 387

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           A  I   M  KG   + +SY+++L G   +G+
Sbjct: 388 AEEIFQYMTTKGHMPDLVSYSILLHGYATEGR 419



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 129/301 (42%), Gaps = 40/301 (13%)

Query: 46  NLLHYDLIITKL-GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERAL 103
           N + Y+ +I  L G ++  + +  +    K   R  P  + F  VI GF+ +  +  +A 
Sbjct: 226 NAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEV-SKAC 284

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK-ELFQIMEKYVSPDACSYNILIHGC 162
            + +EM    V+  V  +N++++       +D+ +  L Q+++K V PD  +Y  +IHG 
Sbjct: 285 NLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGY 344

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             S   +++ K+F +M  + L P +VTF + +  LC   R  +A    E+I +    K  
Sbjct: 345 SCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDA----EEIFQYMTTK-- 398

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
                                G   ++V          YS L+      GR  +   +  
Sbjct: 399 ---------------------GHMPDLVS---------YSILLHGYATEGRFADMNNLFH 428

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            M ++G   N   +N LIS   K    + A  +  EM  +G + + ++Y+ ++   C+ G
Sbjct: 429 SMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMG 488

Query: 343 K 343
           +
Sbjct: 489 R 489



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 93/191 (48%), Gaps = 2/191 (1%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +Y IL+  C  +RR +     F  +++  L+   +   T +  LC   R DEA+ +    
Sbjct: 158 TYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAVDVLLHR 217

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD--KIEMDAGIYSSLISALFKA 271
           M      P+   + ++IK LC       AL + + M ++  +   D   ++++I   FK 
Sbjct: 218 MSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQ 277

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G  ++   ++ EM ++G +P+ VTYN+++   CK    + A  +L +M DKG + + ++Y
Sbjct: 278 GEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTY 337

Query: 332 NVILGGLCKDG 342
             I+ G    G
Sbjct: 338 TAIIHGYSCSG 348



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 103/233 (44%), Gaps = 2/233 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F ++I  Y     +E+A  + D M S  ++  V  +NTL++     GK+D    L
Sbjct: 578 PTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLIL 637

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K V P   +Y+I++ G   + R   A K+F EM+       + T+  L+ GLC 
Sbjct: 638 FREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCR 697

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
               DEA+ L    +   + K D  +  ++I  L  V     A  +   +    +  +  
Sbjct: 698 NDLTDEAITLFHK-LGAMDCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVS 756

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
            Y  +I  L K G   E   +   M++ GC P+S   N +I    ++ D   A
Sbjct: 757 TYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKA 809


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 145/293 (49%), Gaps = 36/293 (12%)

Query: 81  PKEIIFCNVIGF-YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F N++   + +   +  A  +FD ++ + ++ +V  +NTL+N  +  G LD    
Sbjct: 139 PASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L   M    V PD  +Y++LI+G     +++DA K+FDEM+++ L P  VTF TLI G C
Sbjct: 199 LKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHC 258

Query: 199 LELRVDEALKLKE----------------------------------DIMRVYNVKPDGQ 224
               VD A+++ +                                  D M +  +KPD  
Sbjct: 259 KNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKI 318

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G C  G+L  A   ++ M+++ I +D   Y++LIS L + GR  +   +L+EM
Sbjct: 319 TYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 378

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
              G KP++ TY  +I+ FCK+ D      +L EM   G   + ++YNV++ G
Sbjct: 379 LSVGLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 126/239 (52%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   SYN L++G + 
Sbjct: 130 YEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++ +++   M    + P + T+  LI GLC E ++D+A KL ++++    + P+  
Sbjct: 190 LGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEK-GLVPNSV 248

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM
Sbjct: 249 TFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEM 308

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G KP+ +TY  LI G CKE D + AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 309 SMXGLKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGR 367



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 2/229 (0%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           H + + P    +  +I    +   ++ A ++FDEM    +      F TL++     G +
Sbjct: 204 HASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWV 263

Query: 135 DRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           D   E++ Q++ + + PD  +YN LI+G      L+ A  + DEM    L+P  +T+ TL
Sbjct: 264 DLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTL 323

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G C E  +D A + ++ +M   N++ D   + +LI GLC  G    A  +  EM+   
Sbjct: 324 IDGCCKEGDLDTAFEHRK-MMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
           ++ D   Y+ +I+   K G   +   +LKEM+  G  P+ VTYN L++G
Sbjct: 383 LKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 49/103 (47%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G      ++   + + G +P+ V+YN L+
Sbjct: 125 LVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G   +  +Y+V++ GLCK+ K
Sbjct: 185 NGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESK 227


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 164/340 (48%), Gaps = 42/340 (12%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           L+P  Y    +++++    +AK  D + ++  ++++     P  I +  +I    +   +
Sbjct: 120 LRPDTYT---FNVLMNAFKKAKRVDSVWKLFEEMQNQN-CSPNVITYSILIDAVCKCGGV 175

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM--EKYVSPDACSYNI 157
           E+AL++F +M S   +  +  + ++++     G +D+   LF+ M  E  V+     YN 
Sbjct: 176 EKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVV-YNS 234

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI---- 213
           LIHG   S R + A K+F EM+ + LQP  VTF +L+YGL +  R  EA ++ ++     
Sbjct: 235 LIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVG 294

Query: 214 ----MRVYNV--------------------------KPDGQVFASLIKGLCAVGELSLAL 243
               + +YNV                           PD   F +L+ GLC  G +  A 
Sbjct: 295 CALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAF 354

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            +  +M R     D  +Y++LI  L K+GR  E   +L EM+  G +P+ VTYN LI   
Sbjct: 355 ILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDES 414

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           CK    E A  + +E+  KG  AN ++YN IL GLC  G+
Sbjct: 415 CKGGRIEDALRLFEEISAKGF-ANTVTYNTILNGLCMAGR 453



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 137/265 (51%), Gaps = 2/265 (0%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           +R + +  IF  +   Y  A LLE++++    M      +T   +N+L++  +  G   +
Sbjct: 48  SRYILQPRIFIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQK 107

Query: 137 MKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              ++++M +  + PD  ++N+L++    ++R++  WK+F+EM  +   P ++T+  LI 
Sbjct: 108 ALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILID 167

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
            +C    V++ALK+  D M+    +P+   + S+I GL   G +  A  + EEM  + + 
Sbjct: 168 AVCKCGGVEKALKVFLD-MKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLV 226

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
               +Y+SLI  L ++GR +    + +EM  +G +P+ VT+ +L+ G         A  I
Sbjct: 227 ATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRI 286

Query: 316 LDEMGDKGCKANPISYNVILGGLCK 340
             E  D GC  +   YNV++  LCK
Sbjct: 287 FQEARDVGCALDVNLYNVLIDTLCK 311



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 147/304 (48%), Gaps = 8/304 (2%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R N+  Y  +I  LG++   D+   +  ++  +  +V   +++ ++I   GR+   + A 
Sbjct: 191 RPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEG-LVATRVVYNSLIHGLGRSGRADAAA 249

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGC 162
           ++F EM S  +Q     F +L+      G+    + +FQ   +   + D   YN+LI   
Sbjct: 250 KLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTL 309

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             S+RL++AW++F E+ +  L P + TF  L+ GLC   R+ +A  L  D+ R     PD
Sbjct: 310 CKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRA-GCTPD 368

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
             V+ +LI GL   G +  A  +  EM     E D   Y++LI    K GR  +   + +
Sbjct: 369 VTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFE 428

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA--NP--ISYNVILGGL 338
           E+  +G   N+VTYN +++G C     + A+ + + M  +      +P  ++Y  +L G 
Sbjct: 429 EISAKGF-ANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNGA 487

Query: 339 CKDG 342
            + G
Sbjct: 488 RQAG 491



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 10/199 (5%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+++I  L ++K  DE  +I  +L+ D  +VP    F  ++    ++  +  A  +  +M
Sbjct: 302 YNVLIDTLCKSKRLDEAWEIFGELEEDG-LVPDVYTFNALMDGLCKSGRIHDAFILLGDM 360

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
                   V  +NTL++     G+++   +L   M+     PD  +YN LI       R+
Sbjct: 361 KRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRI 420

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-----KEDIMRVYNVKPDG 223
           EDA ++F+E+  +    T VT+ T++ GLC+  RVDEA KL     +E +  V  + PD 
Sbjct: 421 EDALRLFEEISAKGFANT-VTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGV--IDPDF 477

Query: 224 QVFASLIKGLCAVGELSLA 242
             + +L+ G    G   LA
Sbjct: 478 VTYTTLLNGARQAGLSELA 496



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 93/227 (40%), Gaps = 37/227 (16%)

Query: 119 KFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           + F  L     + G L++  E  + ME +  +  A +YN LI   V +   + A  V+  
Sbjct: 55  RIFIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRV 114

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M +  L+P   TF  L+       RVD   KL E+ M+  N  P+               
Sbjct: 115 MGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEE-MQNQNCSPN--------------- 158

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
                                  YS LI A+ K G   +   +  +MK RGC+PN  TY 
Sbjct: 159 --------------------VITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYT 198

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
           ++I G  K    + AF + +EM  +G  A  + YN ++ GL + G+ 
Sbjct: 199 SMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRA 245



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 71/126 (56%), Gaps = 2/126 (1%)

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           Y ++P  ++F  L +G  + G L  ++   + M   +  + A  Y+SLI A  KAG   +
Sbjct: 50  YILQP--RIFIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQK 107

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
             A+ + M + G +P++ T+N L++ F K +  ++ + + +EM ++ C  N I+Y++++ 
Sbjct: 108 ALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILID 167

Query: 337 GLCKDG 342
            +CK G
Sbjct: 168 AVCKCG 173


>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 537

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 131/251 (52%), Gaps = 3/251 (1%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145
           +  +I   G+ R  + A  + D M S NV+++++ F  L+   +  G        F  ME
Sbjct: 154 YNEMIDLAGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213

Query: 146 KY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
            Y   PD  +++I+I      RR  +A   FD + K R +P ++ +  L+ G C    + 
Sbjct: 214 DYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSL-KDRFEPDVIVYTNLVRGWCRAGEIS 272

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           EA K+ +D M++  ++P+   ++ +I  LC  G++S A  V  +M+      +A  +++L
Sbjct: 273 EAEKVFKD-MKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNL 331

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           +    KAGR  +   +  +MK+ GC+P+++TYN LI   C++E+ E A  +L+ M  K C
Sbjct: 332 MRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYNFLIETHCRDENLENAVKVLNTMIKKKC 391

Query: 325 KANPISYNVIL 335
           + N  ++N I 
Sbjct: 392 EVNASTFNTIF 402



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 146/296 (49%), Gaps = 5/296 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           + ++I+ L R +   E Q     LK   R  P  I++ N++  + RA  +  A ++F +M
Sbjct: 224 FSIVISNLSRKRRASEAQSFFDSLK--DRFEPDVIVYTNLVRGWCRAGEISEAEKVFKDM 281

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
               ++  V  ++ +++    CG++ R  ++F  +++   +P+A ++N L+   V + R 
Sbjct: 282 KLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRP 341

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E   +V+++M K   +P  +T+  LI   C +  ++ A+K+   +++    + +   F +
Sbjct: 342 EKVLQVYNQMKKLGCEPDTITYNFLIETHCRDENLENAVKVLNTMIK-KKCEVNASTFNT 400

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           + + +    +++ A  +  +M+  K E +   Y+ L+     +   +    + K+M ++ 
Sbjct: 401 IFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKE 460

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS-YNVILGGLCKDGK 343
            +PN  TY  L++ FC    +  A+ +  EM ++ C    +S Y ++L  L + G+
Sbjct: 461 VEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQ 516



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 133/300 (44%), Gaps = 16/300 (5%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           + ++I +  RA +  E     ++++ D   VP +I F  VI    R R    A   FD +
Sbjct: 189 FTILIRRYVRAGLASEAVHCFNRME-DYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSL 247

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRL 168
                +  V  +  L+      G++   +++F+ M+   + P+  +Y+I+I       ++
Sbjct: 248 KD-RFEPDVIVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQI 306

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN------VKPD 222
             A  VF +M+     P  +TF  L       +RV       E +++VYN       +PD
Sbjct: 307 SRAHDVFADMLDSGCAPNAITFNNL-------MRVHVKAGRPEKVLQVYNQMKKLGCEPD 359

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              +  LI+  C    L  A+ V   M++ K E++A  ++++   + K    N    +  
Sbjct: 360 TITYNFLIETHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYS 419

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +M E  C+PN+VTYN L+  F   +  +    +  +M DK  + N  +Y +++   C  G
Sbjct: 420 KMMEAKCEPNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKEVEPNVNTYRLLVTMFCGMG 479



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 2/189 (1%)

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YN +I      R+ + AW + D M  R ++ ++ TF  LI          EA+    + M
Sbjct: 154 YNEMIDLAGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCF-NRM 212

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
             Y   PD   F+ +I  L      S A    + + +D+ E D  +Y++L+    +AG  
Sbjct: 213 EDYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSL-KDRFEPDVIVYTNLVRGWCRAGEI 271

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +E   + K+MK  G +PN  TY+ +I   C+      A  +  +M D GC  N I++N +
Sbjct: 272 SEAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNL 331

Query: 335 LGGLCKDGK 343
           +    K G+
Sbjct: 332 MRVHVKAGR 340



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/242 (18%), Positives = 99/242 (40%), Gaps = 37/242 (15%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y ++I  L R         +   +  D+   P  I F N++  + +A   E+ LQ+
Sbjct: 289 NVYTYSIVIDALCRCGQISRAHDVFADML-DSGCAPNAITFNNLMRVHVKAGRPEKVLQV 347

Query: 106 FDEMSSF--------------------NVQMTVKFFNTLLNPKLTCGK---------LDR 136
           +++M                       N++  VK  NT++  K              +++
Sbjct: 348 YNQMKKLGCEPDTITYNFLIETHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEK 407

Query: 137 MKEL-------FQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
            +++        ++ME    P+  +YNIL+     S+  +   K+  +M  + ++P + T
Sbjct: 408 KRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKEVEPNVNT 467

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           +  L+   C     + A KL ++++    + P   ++  ++  L   G+L     + E+M
Sbjct: 468 YRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKM 527

Query: 250 VR 251
           ++
Sbjct: 528 IQ 529


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 164/308 (53%), Gaps = 6/308 (1%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           +D +   LKP RY      L++ K+G++    E +++L ++    +I+P  +++  +I  
Sbjct: 317 DDMQIKGLKPNRYTYNSIILLLCKIGKSF---EAEKVLREMM-SQKIIPDNVVYTTLIHG 372

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPD 151
           + +   +  A + FDEM S  +      + TL+      GK+   + LF +++ + + PD
Sbjct: 373 FFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPD 432

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +Y  LI     +  + +A+ + +EMV+  + P +VT+G LI GLC    +D A +L +
Sbjct: 433 EVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLD 492

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           + MR   ++ +  ++ S++ G+C  G +  A+ + +EM    I+ DA  Y+++I A  + 
Sbjct: 493 E-MRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRL 551

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G  ++   +L+EM +RG +P  VT+N L++GFC     E    +L  M +KG   + I+Y
Sbjct: 552 GDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITY 611

Query: 332 NVILGGLC 339
           N ++   C
Sbjct: 612 NTLMKQHC 619



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 160/334 (47%), Gaps = 38/334 (11%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +N   Y++II  L R     E  ++L Q+   +   P  + +  VI  Y     L++AL+
Sbjct: 256 WNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSS-TPDVVSYSTVIDGYCHLGELKKALK 314

Query: 105 MFDEMS-----------------------SFNVQMTVK------------FFNTLLNPKL 129
           + D+M                        SF  +  ++             + TL++   
Sbjct: 315 LMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFF 374

Query: 130 TCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
             G +    + F +++ K +SPD  +Y  LI G     ++ +   +F EM+ R L+P  V
Sbjct: 375 KLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEV 434

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           T+ TLI   C    +  A  L  +++++  + P+   + +LI GLC  GEL  A  + +E
Sbjct: 435 TYTTLIDVYCKAGEMVNAFSLHNEMVQM-GMTPNIVTYGALIDGLCKHGELDTANELLDE 493

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M +  ++++  IY+S+++ + KAG   +   ++KEM+  G  P+++TY  +I  +C+  D
Sbjct: 494 MRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGD 553

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            + A  +L EM D+G +   +++NV++ G C  G
Sbjct: 554 IDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLG 587



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 123/246 (50%), Gaps = 5/246 (2%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           +E A+++F E   + +      +N ++      GK+     L   M+ +  +PD  SY+ 
Sbjct: 242 IEMAIKVFCE---YGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYST 298

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I G      L+ A K+ D+M  + L+P   T+ ++I  LC   +  EA K+  ++M   
Sbjct: 299 VIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMS-Q 357

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + PD  V+ +LI G   +G +  A    +EM+  KI  D   Y++LI    + G+  E 
Sbjct: 358 KIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEP 417

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +  EM  RG KP+ VTY  LI  +CK  +   AF++ +EM   G   N ++Y  ++ G
Sbjct: 418 QNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDG 477

Query: 338 LCKDGK 343
           LCK G+
Sbjct: 478 LCKHGE 483



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 134/295 (45%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I   G+     E Q + H++     + P E+ +  +I  Y +A  +  A  + +EM
Sbjct: 401 YTTLIQGFGQGGKVIEPQNLFHEMI-SRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEM 459

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
               +   +  +  L++     G+LD   EL   M K  +  + C YN +++G   +  +
Sbjct: 460 VQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNI 519

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E A K+  EM    + P  +T+ T+I   C    +D+A KL ++++    ++P    F  
Sbjct: 520 EQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLD-RGLQPTVVTFNV 578

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ G C +G L     +   M+   I  DA  Y++L+         N    I K M+ +G
Sbjct: 579 LMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQG 638

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             P+S TYN LI G CK  + + A+ +  EM +KG      SYN ++    K  K
Sbjct: 639 VAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKK 693



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 119/245 (48%), Gaps = 2/245 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           L+ A ++ DEM    +Q+ V  +N+++N     G +++  +L + ME   + PDA +Y  
Sbjct: 484 LDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTT 543

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I        ++ A K+  EM+ R LQPT+VTF  L+ G C+   +++  +L    M   
Sbjct: 544 VIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLL-GWMLEK 602

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + PD   + +L+K  C    ++    + + M    +  D+  Y+ LI    KA    E 
Sbjct: 603 GIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEA 662

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + KEM E+G  P   +YNALI  F K++    A  + +EM   G  A+   YN  +  
Sbjct: 663 WFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDM 722

Query: 338 LCKDG 342
             ++G
Sbjct: 723 CYEEG 727



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 130/278 (46%), Gaps = 3/278 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L +    D   ++L +++    +     I+ +++    +A  +E+A+++
Sbjct: 467 NIVTYGALIDGLCKHGELDTANELLDEMRKKG-LQLNVCIYNSMVNGICKAGNIEQAIKL 525

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
             EM    +      + T+++     G +D+  +L Q ++++ + P   ++N+L++G  +
Sbjct: 526 MKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCM 585

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              LED  ++   M+++ + P  +T+ TL+   C+   ++   K+ +  MR   V PD  
Sbjct: 586 LGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKR-MRNQGVAPDSN 644

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LIKG C    L  A  + +EM+          Y++LI   +K  +  E   + +EM
Sbjct: 645 TYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEM 704

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           +  G   +   YN  +    +E D E    + DE  +K
Sbjct: 705 RGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIEK 742


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 140/266 (52%), Gaps = 2/266 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           IVP    F  VI  Y      + A++  + M  +N       +NT+L+     G+L   +
Sbjct: 204 IVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDAR 263

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           +L   M+ + + P+  +YNIL++G      L++A  V + M +  L P + T+  LI GL
Sbjct: 264 DLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGL 323

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C E R++EA KL+++ M    + PD   + +LI G     ++S A  + EEM    ++ +
Sbjct: 324 CNEGRIEEAFKLRDE-MENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPN 382

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           A  ++ ++    K G+ ++    + +M+E G  P+ VTYN LI+G+CK  +   AF  +D
Sbjct: 383 AVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMD 442

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
           EMG K  K + ++ N IL  LC++ K
Sbjct: 443 EMGRKNMKMDSVTLNTILRTLCREKK 468



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 149/295 (50%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ I+  L +     + + +L  +K    ++P    +  ++  Y +   L+ A  + + M
Sbjct: 246 YNTILDTLCKKGRLGDARDLLMDMK-SRGLLPNRNTYNILVYGYCKMGWLKEAANVIELM 304

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
           +  N+   V  +N L+N     G+++   +L   ME   + PD  SYN LI+GC+   ++
Sbjct: 305 TQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKI 364

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A+K+ +EM ++ ++P  VT   ++   C E ++D+A       M      PD   + +
Sbjct: 365 SEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITK-MEESGFSPDCVTYNT 423

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G C  G +  A    +EM R  ++MD+   ++++  L +  +  E   +L   ++RG
Sbjct: 424 LINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRG 483

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              + V+Y  LI G+ K+ + + A  + DEM +K    + ++YN I+GGLC+ GK
Sbjct: 484 YFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGK 538



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 136/280 (48%), Gaps = 8/280 (2%)

Query: 68  QILHQLKHDTRIVPKEIIFCNVI----GFYGRARLLERALQMFDEMSSFNVQMTVKFFNT 123
           QI  ++K   R+ P  ++ CN +      Y  +  +  + + F++     +   V  FN 
Sbjct: 156 QIFKKMKR-LRLRPN-LLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNI 213

Query: 124 LLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR 182
           ++       K     E   +M KY  SPD  +YN ++       RL DA  +  +M  R 
Sbjct: 214 VIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRG 273

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
           L P   T+  L+YG C    + EA  + E +M   N+ PD   +  LI GLC  G +  A
Sbjct: 274 LLPNRNTYNILVYGYCKMGWLKEAANVIE-LMTQNNLLPDVWTYNMLINGLCNEGRIEEA 332

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
             +++EM   K+  D   Y++LI+   +  + +E   +L+EM E+G KPN+VT+N ++  
Sbjct: 333 FKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKW 392

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +CKE   + A   + +M + G   + ++YN ++ G CK G
Sbjct: 393 YCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAG 432



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 134/267 (50%), Gaps = 5/267 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL---TCGKLDRM 137
           P + +    IG Y ++     A Q+F +M    ++  +   NTLLN  +   +   +   
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFS 192

Query: 138 KELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           +E F    K  + P+  ++NI+I+G  +  + +DA +  + M K    P  VT+ T++  
Sbjct: 193 REAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDT 252

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC + R+ +A  L  D M+   + P+   +  L+ G C +G L  A  V E M ++ +  
Sbjct: 253 LCKKGRLGDARDLLMD-MKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLP 311

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           D   Y+ LI+ L   GR  E   +  EM+     P+ V+YN LI+G  +      AF +L
Sbjct: 312 DVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLL 371

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
           +EM +KG K N +++N+++   CK+GK
Sbjct: 372 EEMSEKGVKPNAVTHNIMVKWYCKEGK 398



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 149/306 (48%), Gaps = 19/306 (6%)

Query: 46  NLLHYDLIITKL---GRA----KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           ++  Y+++I  L   GR     K+ DEM+ +        +++P  + +  +I        
Sbjct: 312 DVWTYNMLINGLCNEGRIEEAFKLRDEMENL--------KLLPDVVSYNTLINGCLEWSK 363

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           +  A ++ +EMS   V+      N ++      GK+D        ME+   SPD  +YN 
Sbjct: 364 ISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNT 423

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM-RV 216
           LI+G   +  + +A++  DEM ++ ++   VT  T++  LC E +++EA KL      R 
Sbjct: 424 LINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRG 483

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           Y +  D   + +LI G    G +  AL + +EM   +I      Y+ +I  L + G+  +
Sbjct: 484 YFI--DEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQ 541

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
             + L E+ E G  P+  TYN ++ G+C+E D E AF   ++M +   K +  + N++L 
Sbjct: 542 AISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLR 601

Query: 337 GLCKDG 342
           GLC +G
Sbjct: 602 GLCMEG 607



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 150/327 (45%), Gaps = 26/327 (7%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + + +  + I+  L R K  +E  ++L   +     +  E+ +  +I  Y +   ++
Sbjct: 447 KNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFI-DEVSYGTLIVGYFKDGNVD 505

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILI 159
           RAL+++DEM    +  +   +N ++     CGK ++ + +L +++E  + PD  +YN ++
Sbjct: 506 RALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTIL 565

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           HG      +E A++  ++MV+   +P + T   L+ GLC+E  +++ALKL    +     
Sbjct: 566 HGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVS-KGK 624

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
             D   + +LI  LC  G L  A  +  EM   ++  D   Y+++I+AL  +GR  E   
Sbjct: 625 AIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEE 684

Query: 280 ILKEMKERGCKPNS-----------------------VTYNALISGFCKEEDFEAAFTIL 316
            + +M E+G  P+                        V Y+  I   C E  ++ A  I 
Sbjct: 685 FMSKMLEKGNLPDQVLQLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIF 744

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
            E   KG   +  +Y  ++ GL K  K
Sbjct: 745 GESKQKGITVDKSTYINLMDGLIKRRK 771



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 140/304 (46%), Gaps = 3/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + N + +++++    +    D+    + +++ ++   P  + +  +I  Y +A  + 
Sbjct: 377 KGVKPNAVTHNIMVKWYCKEGKMDDASNTITKME-ESGFSPDCVTYNTLINGYCKAGNMG 435

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
            A +  DEM   N++M     NT+L       KL+   +L     K     D  SY  LI
Sbjct: 436 EAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLI 495

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G      ++ A K++DEM ++ + P+ VT+  +I GLC   + ++A+    +++    +
Sbjct: 496 VGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLES-GL 554

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   + +++ G C  G++  A     +MV +  + D    + L+  L   G   +   
Sbjct: 555 LPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALK 614

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +      +G   ++VTYN LI+  CKE   + AF +L EM +K    +  +YN I+  L 
Sbjct: 615 LFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALT 674

Query: 340 KDGK 343
             G+
Sbjct: 675 DSGR 678


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 153/298 (51%), Gaps = 4/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y +++        F +M  + H +  D  IV        +I  + +  +++ A+ +
Sbjct: 371 DIVSYSILLHGYATEGRFADMNNLFHSMA-DKGIVSNCHCINILISAHAKRGMMDEAMLV 429

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           F EM    V+  V  ++TL++     G+L D M++  Q++   + P+   Y+ LIHG  +
Sbjct: 430 FTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCM 489

Query: 165 SRRLEDAWKVFDEMVKRRLQ-PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              L  A +   EM+ + L  P +V F ++I+ LC+E RV +A  +   ++ + + +P  
Sbjct: 490 HGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGD-RPTI 548

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             F SLI G C VG++  A GV + MV   IE D    ++L+S   K+G+ ++   + +E
Sbjct: 549 VTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFRE 608

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           M  +  KP +VTYN ++ G  +     AA  +  EM D G   +  +Y ++L GLC++
Sbjct: 609 MLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRN 666



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 151/331 (45%), Gaps = 39/331 (11%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ I+  L +A+  D+ + +L Q+  D  + P  + +  +I  Y  +   + + +MF +M
Sbjct: 270 YNSIVDALCKARAMDKAEFVLRQMV-DKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKM 328

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRL 168
           +S  +      F++ ++     G+    +E+FQ M  K   PD  SY+IL+HG     R 
Sbjct: 329 TSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRF 388

Query: 169 ED-----------------------------------AWKVFDEMVKRRLQPTLVTFGTL 193
            D                                   A  VF EM  + ++P +VT+ TL
Sbjct: 389 ADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTL 448

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I   C   R+ +A++    ++ +  ++P+  V+ SLI G C  G+L  A     EM+   
Sbjct: 449 ISAFCRMGRLADAMEKFSQMISI-GIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKG 507

Query: 254 IEM-DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
           +   +   +SS+I +L   GR  +   +   +   G +P  VT+N+LI G+C     E A
Sbjct: 508 LHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKA 567

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           F +LD M   G + + ++ N ++ G CK GK
Sbjct: 568 FGVLDAMVSVGIEPDVVTNNTLVSGYCKSGK 598



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 119/250 (47%), Gaps = 12/250 (4%)

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSY 155
           ARLL   L+      +  +Q T  F   L + K T   +D +  L ++ E    PDA SY
Sbjct: 148 ARLLRAGLK------TGTIQATT-FLKCLCHAKRTDEAVDVL--LHRMSELSCVPDAISY 198

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKR--RLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           N +I       R ++A  +   M K   R  P +V+F T+I+G   +  V +A  L  ++
Sbjct: 199 NTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEM 258

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           ++   V PD   + S++  LC    +  A  V  +MV   +E D   Y+++I     +G 
Sbjct: 259 VQ-KGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGH 317

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   + ++M  +G  P++VT+++ +S  CK    + A  I   M  KG   + +SY++
Sbjct: 318 WKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSI 377

Query: 334 ILGGLCKDGK 343
           +L G   +G+
Sbjct: 378 LLHGYATEGR 387



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 112/229 (48%), Gaps = 12/229 (5%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYV------SPDACSYNILIHGCVVSRRLEDAWKV 174
           +NT++  K  CG   R +E   ++++        SPD  S+N +IHG      +  A  +
Sbjct: 198 YNTVI--KSLCGD-SRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNL 254

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA-LKLKEDIMRVYNVKPDGQVFASLIKGL 233
           F+EMV++ + P + T+ +++  LC    +D+A   L++ + +   V+PDG  + ++I G 
Sbjct: 255 FNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDK--GVEPDGVTYNAIIHGY 312

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
              G    +  +  +M    +  D   +SS +S+L K GR  +   I + M  +G  P+ 
Sbjct: 313 SCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDI 372

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           V+Y+ L+ G+  E  F     +   M DKG  +N    N+++    K G
Sbjct: 373 VSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRG 421



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 140/310 (45%), Gaps = 18/310 (5%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMF--DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           P     ++L+H   +   L +AK F  + M + LH+        P  + F ++I      
Sbjct: 475 PNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHR--------PNIVFFSSIIHSLCIE 526

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDA 152
             +  A  +F+ +     + T+  FN+L++     GK   M++ F +++  VS    PD 
Sbjct: 527 GRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGK---MEKAFGVLDAMVSVGIEPDV 583

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            + N L+ G   S +++D   +F EM+ ++++PT VT+  ++ GL    R   A K+  +
Sbjct: 584 VTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHE 643

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           ++       D   +  L+KGLC       A+ +  ++     + D  I +++I+AL+K  
Sbjct: 644 MID-SGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVR 702

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           R+ E   +   +   G  PN  TY  +I    KE   E A T+   M   GC  +    N
Sbjct: 703 RREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLN 762

Query: 333 VILGGLCKDG 342
            I+  L + G
Sbjct: 763 DIIRMLLQKG 772



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 2/191 (1%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +Y IL+  C  +RR +        +++  L+   +   T +  LC   R DEA+ +    
Sbjct: 126 TYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRTDEAVDVLLHR 185

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD--KIEMDAGIYSSLISALFKA 271
           M   +  PD   + ++IK LC       AL + + M ++  +   D   ++++I   FK 
Sbjct: 186 MSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQ 245

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G  ++   +  EM ++G  P+  TYN+++   CK    + A  +L +M DKG + + ++Y
Sbjct: 246 GEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTY 305

Query: 332 NVILGGLCKDG 342
           N I+ G    G
Sbjct: 306 NAIIHGYSCSG 316



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 117/270 (43%), Gaps = 3/270 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R N++ +  II  L       + Q + + + H     P  + F ++I  Y     +E+A 
Sbjct: 510 RPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIH-IGDRPTIVTFNSLIDGYCLVGKMEKAF 568

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGC 162
            + D M S  ++  V   NTL++     GK+D    LF +++ K V P   +YNI++ G 
Sbjct: 569 GVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGL 628

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
           + + R   A K+F EM+       + T+  L+ GLC     DEA+ L    +   + K D
Sbjct: 629 LRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHK-LGAMDCKFD 687

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
             +  ++I  L  V     A  +   +    +  +   Y  +I  L K G   E   +  
Sbjct: 688 ITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFS 747

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAA 312
            M++ GC P+S   N +I    ++ D   A
Sbjct: 748 SMEKSGCAPSSRLLNDIIRMLLQKGDIVKA 777


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 132/265 (49%), Gaps = 2/265 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           ++P  ++F  ++  + +AR L  A  +F  M  F V   +  +N L++     G +    
Sbjct: 300 LLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAV 359

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            L   ME   +SPD  +Y ILI+G  +  ++ +A ++F +M   R+ P+  T+ +LI+G 
Sbjct: 360 GLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGY 419

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C E  +++AL L  + M    V+P+   F++LI G C V ++  A+G+  EM    I  D
Sbjct: 420 CKEYNMEQALDLCSE-MTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPD 478

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y++LI A FK     E   +  +M E G  PN  T+  L+ GF KE     A     
Sbjct: 479 VVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQ 538

Query: 318 EMGDKGCKANPISYNVILGGLCKDG 342
           E   +    N + +  ++ GLC++G
Sbjct: 539 ENNQQRSCWNHVGFTCLIEGLCQNG 563



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 145/288 (50%), Gaps = 3/288 (1%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           I+  L R + FD +  + +QL     +VP   I+  +     +  L  +  ++ DEM+S 
Sbjct: 170 ILNGLVRRRRFDSVW-VDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSL 228

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDA 171
            ++  V  +   +       K++  +++F++M+K+ V P+  +Y+ +I G   +  +  A
Sbjct: 229 GIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQA 288

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIK 231
           + ++ E++   L P +V FGTL+ G C    +  A  L   +++ + V P+  V+  LI 
Sbjct: 289 YGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVK-FGVDPNLYVYNCLIH 347

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           G C  G +  A+G+  EM    +  D   Y+ LI+ L    +  E   + ++MK     P
Sbjct: 348 GHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFP 407

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +S TYN+LI G+CKE + E A  +  EM   G + N I+++ ++ G C
Sbjct: 408 SSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYC 455



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 136/299 (45%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y + I  L R    +E +++   +K    ++P    +  +I  Y +   + +A  +
Sbjct: 233 NVYIYTIYILDLCRDNKMEEAEKMFELMKKHG-VLPNLYTYSAMIDGYCKTGNVRQAYGL 291

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           + E+    +   V  F TL++      +L   + LF  M K+ V P+   YN LIHG   
Sbjct: 292 YKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCK 351

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S  + +A  +  EM    L P + T+  LI GLC+E +V EA +L +  M+   + P   
Sbjct: 352 SGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQK-MKNERIFPSSA 410

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SLI G C    +  AL +  EM    +E +   +S+LI              +  EM
Sbjct: 411 TYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEM 470

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G  P+ VTY ALI    KE + + A  +  +M + G   N  ++  ++ G  K+G+
Sbjct: 471 TIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGR 529



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 1/194 (0%)

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P+   Y I I       ++E+A K+F+ M K  + P L T+  +I G C    V +A 
Sbjct: 230 IKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAY 289

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            L ++I+ V  + P+  VF +L+ G C   EL  A  +   MV+  ++ +  +Y+ LI  
Sbjct: 290 GLYKEIL-VAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHG 348

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
             K+G   E   +L EM+     P+  TY  LI+G C E+    A  +  +M ++    +
Sbjct: 349 HCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPS 408

Query: 328 PISYNVILGGLCKD 341
             +YN ++ G CK+
Sbjct: 409 SATYNSLIHGYCKE 422



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 110/264 (41%), Gaps = 15/264 (5%)

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTL---LNPKLTCGKLDRM-----------K 138
           Y  AR L ++L    +  S    M+ + FN L    +PK + G    +           +
Sbjct: 91  YTLARCLIKSLIERLKRHSEPSNMSHRLFNALEDIQSPKFSIGVFSLLIMEFLEMGLFEE 150

Query: 139 ELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            L+   E   SPD+ +   +++G V  RR +  W  +  M+ R L P +  +  L +  C
Sbjct: 151 ALWVSREMKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVL-FQCC 209

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
            +  +    +   D M    +KP+  ++   I  LC   ++  A  + E M +  +  + 
Sbjct: 210 FKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNL 269

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             YS++I    K G   +   + KE+      PN V +  L+ GFCK  +   A ++   
Sbjct: 270 YTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVH 329

Query: 319 MGDKGCKANPISYNVILGGLCKDG 342
           M   G   N   YN ++ G CK G
Sbjct: 330 MVKFGVDPNLYVYNCLIHGHCKSG 353



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 127/280 (45%), Gaps = 11/280 (3%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           ++ E+  L P   ++  Y ++I  L       E  ++  ++K++ RI P    + ++I  
Sbjct: 363 SEMESLNLSP---DVFTYTILINGLCIEDQVAEANRLFQKMKNE-RIFPSSATYNSLIHG 418

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVS 149
           Y +   +E+AL +  EM++  V+  +  F+TL++    C   D    M   F++  K + 
Sbjct: 419 YCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDG--YCNVRDIKAAMGLYFEMTIKGIV 476

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PD  +Y  LI        +++A +++ +M++  + P   TF  L+ G   E R+  A+  
Sbjct: 477 PDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDF 536

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            ++  +  +   +   F  LI+GLC  G +  A     +M    I  D   Y S++    
Sbjct: 537 YQENNQQRSCW-NHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHL 595

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           +  R  +   +  +M + G  PN +  N L++ F +   +
Sbjct: 596 QEKRITDTMMLQCDMIKTGILPNLLV-NQLLARFYQANGY 634



 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 26/201 (12%)

Query: 166 RRLEDAWKVFDEMVKRRLQPT--LVTFGTLIYGL----------CLELRVDEALKLKED- 212
           R  E+A+K+F+   + R+  +  L +F  +I+ L          CL   + E LK   + 
Sbjct: 52  RSAEEAFKLFETSSRSRVSKSNDLQSFSAVIHVLTGAHKYTLARCLIKSLIERLKRHSEP 111

Query: 213 ---IMRVYNVKPDGQ-------VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
                R++N   D Q       VF+ LI     +G    AL V  EM   K   D+    
Sbjct: 112 SNMSHRLFNALEDIQSPKFSIGVFSLLIMEFLEMGLFEEALWVSREM---KCSPDSKACL 168

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           S+++ L +  R +      + M  RG  P+   Y  L     K+  +     +LDEM   
Sbjct: 169 SILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSL 228

Query: 323 GCKANPISYNVILGGLCKDGK 343
           G K N   Y + +  LC+D K
Sbjct: 229 GIKPNVYIYTIYILDLCRDNK 249


>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
          Length = 554

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 141/291 (48%), Gaps = 2/291 (0%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           YDL++  LG+ K FD M  +++Q+     ++    +   +    G +R  E A+  F +M
Sbjct: 169 YDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTE-AIDAFHKM 227

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
             F V    K  N LL+       + R + +FQ +   + PD  S+N L+HG   +R L+
Sbjct: 228 DRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLK 287

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           +A    +EM +    P++VT+ +L+   C+E        L ++ MR     P+   +  L
Sbjct: 288 EALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDE-MRKRRCPPNVVTYTIL 346

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           +  L   G    AL   +++  D +  DA  Y+SLI  L +AGR  +  ++++EM+  G 
Sbjct: 347 MHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGI 406

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            PN  T+N LIS  C     E A  +L +M ++ C  +  +Y  +L   CK
Sbjct: 407 APNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCK 457



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 114/255 (44%), Gaps = 9/255 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++ ++    +A+M  E    + ++K      P  + + +++  Y   +  +    + DEM
Sbjct: 273 FNTLVHGWCKARMLKEALDTMEEMKQHG-FSPSVVTYTSLVEAYCMEKDFQTVYALLDEM 331

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----VSPDACSYNILIHGCVVS 165
                   V  +  L++     GK  R +E     +K     V+PDA  YN LI+    +
Sbjct: 332 RKRRCPPNVVTYTILMH---ALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRA 388

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            RLEDA+ V +EM    + P + TF TLI   C   + + ALKL    M   +  PD + 
Sbjct: 389 GRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVK-MEEQSCNPDIKT 447

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           +  L+K  C    + + L +   M R  I  D   Y+ L+S L + G+  +    L+EM 
Sbjct: 448 YTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMV 507

Query: 286 ERGCKPNSVTYNALI 300
            +G  P   T++ ++
Sbjct: 508 SKGFAPKQETFDLVM 522



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 97/192 (50%), Gaps = 2/192 (1%)

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
           A SY++++      ++ +  W + ++MV+     +L+T   ++  L    R  EA+    
Sbjct: 166 ADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFH 225

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            + R + V  D +    L+  LC    +  A GV +E+ R  I  D   +++L+    KA
Sbjct: 226 KMDR-FGVVKDTKAMNVLLDTLCKERSVKRARGVFQEL-RGTIPPDENSFNTLVHGWCKA 283

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
               E    ++EMK+ G  P+ VTY +L+  +C E+DF+  + +LDEM  + C  N ++Y
Sbjct: 284 RMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTY 343

Query: 332 NVILGGLCKDGK 343
            +++  L K G+
Sbjct: 344 TILMHALGKAGR 355


>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
          Length = 808

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 159/338 (47%), Gaps = 43/338 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +L  Y LII  L ++K  D+ +++L Q+ +  TR  P  I + ++I  Y  + +   +++
Sbjct: 203 DLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTR--PNSITYNSLIHGYSISGMWNESVR 260

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
           +F +MSS  V  TV   N+ ++     G+ +  K +F  M  K   PD  SY+ ++HG  
Sbjct: 261 VFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYA 320

Query: 164 VSR-------------------------------------RLEDAWKVFDEMVKRRLQPT 186
            +                                       ++ A  +F++M  + + P 
Sbjct: 321 TATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPD 380

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
            VTF T+I  LC   R+D+AL  K + M    V P   V+  LI+G C  GEL  A  + 
Sbjct: 381 TVTFATVISSLCRIGRLDDALH-KFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELI 439

Query: 247 EEMVRDKIEMDAGIY-SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
            EM+   I      Y SS+I+ L K GR  E   I+  M + G +PN VT+N+L+ G+C 
Sbjct: 440 SEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCL 499

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             + E AF +LD M   G + N   Y  ++ G CK+G+
Sbjct: 500 VGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGR 537



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 132/265 (49%), Gaps = 3/265 (1%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P + +F  +I  Y R  ++++A+ +F++M +  +      F T+++     G+LD   
Sbjct: 342 IAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDAL 401

Query: 139 ELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT-FGTLIYG 196
             F  +++  V P    Y  LI GC     L  A ++  EM+ + + P  V  F ++I  
Sbjct: 402 HKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINN 461

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC E RV E   +  D+M     +P+   F SL++G C VG +  A  + + M    IE 
Sbjct: 462 LCKEGRVAEGKDIM-DMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEP 520

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +  IY +L+    K GR ++   + ++M  +G KP SV Y+ ++ G  +     AA  + 
Sbjct: 521 NCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMF 580

Query: 317 DEMGDKGCKANPISYNVILGGLCKD 341
            EM + G   +  +Y V+LGGLC++
Sbjct: 581 HEMIESGTTVSIHTYGVVLGGLCRN 605



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 143/296 (48%), Gaps = 4/296 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++++I    R  M D+   I   ++ +  ++P  + F  VI    R   L+ AL  F+ M
Sbjct: 349 FNILINAYARCGMMDKAMLIFEDMQ-NKGMIPDTVTFATVISSLCRIGRLDDALHKFNHM 407

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSY-NILIHGCVVSRR 167
               V  +   +  L+      G+L + KEL  ++M K + P    Y + +I+      R
Sbjct: 408 VDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGR 467

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           + +   + D MV+   +P +VTF +L+ G CL   ++EA  L  D M    ++P+  ++ 
Sbjct: 468 VAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALL-DAMASIGIEPNCYIYG 526

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +L+ G C  G +  AL V  +M+   ++  + +YS ++  LF+A R      +  EM E 
Sbjct: 527 TLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIES 586

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G   +  TY  ++ G C+    + A  +L+++     K + I++N+++  + K G+
Sbjct: 587 GTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGR 642



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERAL----QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           PK  I       +G A   +  L     +F+ M +  +      FN L+N    CG +D+
Sbjct: 305 PKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDK 364

Query: 137 MKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              +F+ M+ K + PD  ++  +I       RL+DA   F+ MV   + P+   +G LI 
Sbjct: 365 AMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQ 424

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C    + +A +L  ++M      P  + F+S+I  LC  G ++    + + MV+    
Sbjct: 425 GCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQR 484

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            +   ++SL+      G   E  A+L  M   G +PN   Y  L+ G+CK    + A T+
Sbjct: 485 PNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTV 544

Query: 316 LDEMGDKGCKANPISYNVILGGL 338
             +M  KG K   + Y++IL GL
Sbjct: 545 FRDMLHKGVKPTSVLYSIILHGL 567



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 136/303 (44%), Gaps = 45/303 (14%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKH--DTRIVPKEIIF-CNVIGFYGRARLLERALQMF 106
           +  +I+ L R    D+    LH+  H  D  + P E ++ C + G      L+ +A ++ 
Sbjct: 384 FATVISSLCRIGRLDDA---LHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELV-KAKELI 439

Query: 107 DEMSSFNVQM-TVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            EM + ++    VK+F++++N     G++   K++  +M +    P+  ++N L+ G  +
Sbjct: 440 SEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCL 499

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +E+A+ + D M    ++P    +GTL+ G C   R+D+AL +  D++    VKP   
Sbjct: 500 VGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLH-KGVKPTSV 558

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRD-------------------------------- 252
           +++ ++ GL      + A  +  EM+                                  
Sbjct: 559 LYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKL 618

Query: 253 ---KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
               ++ D   ++ +ISA+FK GR+ E   +   +   G  PN  TY+ +I+   KEE +
Sbjct: 619 FAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESY 678

Query: 310 EAA 312
           E A
Sbjct: 679 EEA 681



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 163/349 (46%), Gaps = 27/349 (7%)

Query: 3   TSSIRLACLPRLQKDPKLAL----QLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLG 58
           T +I + C  R+ + P L L    +L KN    P+D        F Y+L++  +   ++ 
Sbjct: 102 TYNILIDCYRRVHR-PDLGLAIVGRLLKN-GLGPDD--------FSYSLIYGFVKDGEVD 151

Query: 59  RAK-MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT 117
           +A  +F EM +          ++PK +I  ++I    + + +++A  +  +M    +   
Sbjct: 152 KAHCLFLEMME--------QGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPD 203

Query: 118 VKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFD 176
           +  ++ +++       +D+ + +  Q++E    P++ +YN LIHG  +S    ++ +VF 
Sbjct: 204 LFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFK 263

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
           +M    + PT+    + I+ L    R +EA K   D M +   KPD   +++++ G    
Sbjct: 264 QMSSCGVIPTVDNCNSFIHALFKHGRTNEA-KCIFDSMVLKGPKPDIISYSTMLHGYATA 322

Query: 237 GELSLA--LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
            +  LA    +   M+   I  +  +++ LI+A  + G  ++   I ++M+ +G  P++V
Sbjct: 323 TDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTV 382

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           T+  +IS  C+    + A    + M D G   +   Y  ++ G C  G+
Sbjct: 383 TFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGE 431



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 95/198 (47%), Gaps = 2/198 (1%)

Query: 146 KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
           ++  P   +YNILI       R +    +   ++K  L P   ++ +LIYG   +  VD+
Sbjct: 94  RHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDK 152

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           A  L  ++M    V P   +  S+IK LC + E+  A  + ++MV   I  D   YS +I
Sbjct: 153 AHCLFLEMME-QGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLII 211

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
             L K+   ++   +L++M E G +PNS+TYN+LI G+     +  +  +  +M   G  
Sbjct: 212 DGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVI 271

Query: 326 ANPISYNVILGGLCKDGK 343
               + N  +  L K G+
Sbjct: 272 PTVDNCNSFIHALFKHGR 289


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 163/344 (47%), Gaps = 20/344 (5%)

Query: 5   SIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFD 64
           SI    + R   DP L L+ F+        +  H      +N   YDL++  L +  + D
Sbjct: 77  SIAFEVIKRFS-DPLLGLKFFEF-------SRTHLSINHTFN--TYDLLMRNLCKVGLND 126

Query: 65  EMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124
             + +   ++ D  I+P   I   ++  Y R   L+ A    +E+  + ++++   +N L
Sbjct: 127 SAKIVFDCMRSDG-ILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNL 185

Query: 125 LNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
           LN  +    +D    LF + +E Y  PD  S+NILI G      ++ A++ F  M     
Sbjct: 186 LNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGC 245

Query: 184 QPTLVTFGTLIYGLCLELRVDEALK----LKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
            P +V++ TLI G C   RV+E  K    LKED M +  V PD   + S+I G C +G++
Sbjct: 246 FPDIVSYNTLINGFC---RVNEISKGHDLLKED-MLIKGVSPDVITYTSIISGYCKLGDM 301

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A  + +EMV   I+ +   ++ LI    K G       + ++M   GC P+ VT+ +L
Sbjct: 302 KAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSL 361

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I G+C+E +      + +EM  +    N  +Y V++  LCK+ +
Sbjct: 362 IDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENR 405



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 148/315 (46%), Gaps = 11/315 (3%)

Query: 33  NDTEAHPLK--PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI 90
           N+   + +K  PF YN L     +  L +  + DE   +L +   +   VP    F  +I
Sbjct: 168 NEVHCYGIKVSPFVYNNL-----LNMLVKQNLVDE-AVLLFREHLEPYFVPDVYSFNILI 221

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYV 148
               R   +++A + F  M +F     +  +NTL+N      ++ +  +L +  ++ K V
Sbjct: 222 RGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGV 281

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           SPD  +Y  +I G      ++ A ++FDEMV   ++P   TF  LI G      +  A+ 
Sbjct: 282 SPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMV 341

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           + E  M +    PD   F SLI G C  GE++  L + EEM    +  +   Y+ LI+AL
Sbjct: 342 MYEK-MLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINAL 400

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K  R  E    L+ +K     P    YN +I GFCK    + A  I+ EM +K C+ + 
Sbjct: 401 CKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDK 460

Query: 329 ISYNVILGGLCKDGK 343
           I++ +++ G C  G+
Sbjct: 461 ITFTILIIGNCMKGR 475



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 112/273 (41%), Gaps = 41/273 (15%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I    R     +   +L +      + P  I + ++I  Y +   ++ A ++
Sbjct: 248 DIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASEL 307

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHG 161
           FDEM S  ++     FN L++     GK+  M+    + EK +     PD  ++  LI G
Sbjct: 308 FDEMVSSGIKPNDFTFNVLID---GFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDG 364

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA------LKLKEDIMR 215
                 +    K+++EM  R L P + T+  LI  LC E R+ EA      LK  E + +
Sbjct: 365 YCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPK 424

Query: 216 --VYN--------------------------VKPDGQVFASLIKGLCAVGELSLALGVKE 247
             +YN                           +PD   F  LI G C  G +  A+    
Sbjct: 425 PFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFY 484

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           +M+      D    +SLIS L KAG  NE   I
Sbjct: 485 KMIEINCVPDEITINSLISCLLKAGMPNEASQI 517


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 151/303 (49%), Gaps = 3/303 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + N++ Y+ II  L + K+  +  ++  Q+    +I P  + F  +I  +     LE
Sbjct: 202 KLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMI-AKKISPDVVTFSALIYGFCIVGQLE 260

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
            A  +F EM   N+      FN L++     G L   K +  +M K  V P+  +Y+ L+
Sbjct: 261 EAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLM 320

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G  +  ++  A  V + + +    P   ++ T+I G C    VDEAL L  D M+   +
Sbjct: 321 DGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFND-MQFKGI 379

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   + SLI GLC  G +S A  + +EM  +    +   Y+ LI AL K    ++  A
Sbjct: 380 APDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIA 439

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           ++K++K++G +P+  T+N LI G CK    + A  +  ++  KG   N  +YN+++ GLC
Sbjct: 440 LVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLC 499

Query: 340 KDG 342
           K+G
Sbjct: 500 KEG 502



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 130/241 (53%), Gaps = 2/241 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           ALQM  ++    V++ V  +NT+++       +    EL+ Q++ K +SPD  +++ LI+
Sbjct: 192 ALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIY 251

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G  +  +LE+A+ +F EMV + + P   TF  L+  LC E  +  A  +   +M+   V 
Sbjct: 252 GFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMK-EGVM 310

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   ++SL+ G C V +++ A  V   + +     +A  Y ++I+   K    +E  ++
Sbjct: 311 PNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSL 370

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             +M+ +G  P+ VTYN+LI G CK      A+ ++DEM D G  AN  +YN ++  LCK
Sbjct: 371 FNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCK 430

Query: 341 D 341
           +
Sbjct: 431 N 431



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 169/355 (47%), Gaps = 29/355 (8%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDT------EAHPLKP--FRYNLLHYDL 52
           KPTSSI       ++ +  L   +  N N  P         E H + P  F +N+L    
Sbjct: 61  KPTSSI-------IEFNKILGSLVKSNNNHYPTAISLSRRLEFHGITPDIFTFNIL---- 109

Query: 53  IITKLGRAKM---FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           I      A+M   F  M +IL ++ ++    P  I F  +I        ++ AL   D +
Sbjct: 110 INCYCHMAEMNFAFSMMAKIL-KMGYE----PDTITFNTLIKGLCLNGKVKEALHFHDHV 164

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168
            +    +    + TL+N     G+    ++ L +I  K V  +   YN +I      + +
Sbjct: 165 LALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLV 224

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            DA++++ +M+ +++ P +VTF  LIYG C+  +++EA  L  + M + N+ PD   F  
Sbjct: 225 IDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFRE-MVLKNINPDYYTFNI 283

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+  LC  G L  A  +   M+++ +  +   YSSL+       + N+   +L  + + G
Sbjct: 284 LVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMG 343

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             PN+ +Y  +I+GFCK +  + A ++ ++M  KG   + ++YN ++ GLCK G+
Sbjct: 344 AAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGR 398



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 151/303 (49%), Gaps = 5/303 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLER 101
           F  +   Y  +I  L +        Q+L ++  D ++V   ++  N +I    + +L+  
Sbjct: 169 FHLDQFSYGTLINGLCKIGETRTALQMLRKI--DGKLVKINVVMYNTIIDSLCKHKLVID 226

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           A +++ +M +  +   V  F+ L+      G+L+    LF +++ K ++PD  ++NIL+ 
Sbjct: 227 AYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVD 286

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                  L+ A  +   M+K  + P +VT+ +L+ G CL  +V++A  +   I ++    
Sbjct: 287 ALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQM-GAA 345

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   + ++I G C +  +  AL +  +M    I  D   Y+SLI  L K+GR +    +
Sbjct: 346 PNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWEL 405

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + EM + G   N  TYN LI   CK    + A  ++ ++ D+G + +  ++N+++ GLCK
Sbjct: 406 VDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCK 465

Query: 341 DGK 343
            G+
Sbjct: 466 VGR 468



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 2/242 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           ++P  + + +++  Y     + +A  + + +S          + T++N       +D   
Sbjct: 309 VMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEAL 368

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            LF  M+ K ++PD  +YN LI G   S R+  AW++ DEM        + T+  LI  L
Sbjct: 369 SLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDAL 428

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C    VD+A+ L + I +   ++PD   F  LI GLC VG L  A  V ++++     ++
Sbjct: 429 CKNHHVDQAIALVKKI-KDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVN 487

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           A  Y+ +++ L K G  +E  A+L +M + G  P++VTY  LI     +++ E A  +L 
Sbjct: 488 AWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKLLR 547

Query: 318 EM 319
           EM
Sbjct: 548 EM 549



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 104/234 (44%), Gaps = 18/234 (7%)

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
           S+ +V   V  FN LL  K T      + E  +I+   V  +   Y   I    +SRRLE
Sbjct: 43  SNIDVDNVVSSFNHLLRTKPT----SSIIEFNKILGSLVKSNNNHYPTAIS---LSRRLE 95

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
                        + P + TF  LI   C    ++ A  +   I+++   +PD   F +L
Sbjct: 96  ----------FHGITPDIFTFNILINCYCHMAEMNFAFSMMAKILKM-GYEPDTITFNTL 144

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           IKGLC  G++  AL   + ++     +D   Y +LI+ L K G       +L+++  +  
Sbjct: 145 IKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLV 204

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           K N V YN +I   CK +    A+ +  +M  K    + ++++ ++ G C  G+
Sbjct: 205 KINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQ 258



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNI 157
           +++A+ +  ++    +Q  +  FN L+      G+L   +++FQ ++ K  S +A +YNI
Sbjct: 434 VDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNI 493

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDIMR 215
           +++G       ++A  +  +M    + P  VT+ TLI  L  +   ++A K L+E I R
Sbjct: 494 MVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREMIAR 552


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 146/292 (50%), Gaps = 14/292 (4%)

Query: 56  KLGRAK----MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111
           KLG+ +    +FDEM  I + LK      P  +I+ ++I  Y +   L  A +++ EM+ 
Sbjct: 437 KLGKLRAAKSLFDEM--IANGLK------PNVVIYTSLISGYCKEGELHNAFRLYHEMTG 488

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLED 170
             +      F  L++      ++    +LF +++E  V P+  +YN+LI G         
Sbjct: 489 KGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVR 548

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           A+++ DEMV++ L P   T+  LI GLC   RV EA +   D ++    K +   F++L+
Sbjct: 549 AFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMND-LQGEQQKLNEMCFSALL 607

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
            G C  G L  AL    EM+   + MD   YS LI  + +   +     +LK+M ++G +
Sbjct: 608 HGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLR 667

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           P++V Y  +I    K  + + AF + D M  +GC  N ++Y  ++ GLCK G
Sbjct: 668 PDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIG 719



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 150/304 (49%), Gaps = 3/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  R ++  Y  ++  L + + F+  +++++++  +   VP E    N++    +   + 
Sbjct: 279 KGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMI-EFGFVPSEAAVSNLVDGLRKKGNIG 337

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            A  + +++  F V  ++  +N L+N     GKLD  + LF  M  K + P+  +Y+ILI
Sbjct: 338 SAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILI 397

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
                  +L+ A     +M +  ++ T+  + +LI G C +L    A K   D M    +
Sbjct: 398 DSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHC-KLGKLRAAKSLFDEMIANGL 456

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           KP+  ++ SLI G C  GEL  A  +  EM    I  +   +++LIS L  A R  E   
Sbjct: 457 KPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANK 516

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +  EM E    PN VTYN LI G CKE +   AF +LDEM +KG   +  +Y  ++ GLC
Sbjct: 517 LFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLC 576

Query: 340 KDGK 343
             G+
Sbjct: 577 STGR 580



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 145/301 (48%), Gaps = 11/301 (3%)

Query: 48  LHYDLII-TKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMF 106
           L +DL+I T +   +  D +  ++ +L  D  I+P+      V+    R R    AL +F
Sbjct: 146 LGFDLLIQTYVQNRRELDGL--VVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLF 203

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVS 165
           DE+ S  ++  V  +  ++          R +E+   ME         +YN+ I G   +
Sbjct: 204 DEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKN 263

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR---VYNVKPD 222
           +R+ +A ++ + +  + L+  + T+ TL+ GLC   +V+E  +  E++M     +   P 
Sbjct: 264 QRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLC---KVEE-FEAGEEMMNEMIEFGFVPS 319

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
               ++L+ GL   G +  A  +  ++ +  +     +Y++LI+++ K G+ +E  ++  
Sbjct: 320 EAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFN 379

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            M  +G  PN VTY+ LI  FCK    + A   L +M + G KA    Y+ ++ G CK G
Sbjct: 380 NMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLG 439

Query: 343 K 343
           K
Sbjct: 440 K 440



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 140/297 (47%), Gaps = 8/297 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I+ L       E ++ ++ L+ + + +  E+ F  ++  Y +   L+ AL    EM
Sbjct: 568 YRPLISGLCSTGRVSEAREFMNDLQGEQQKL-NEMCFSALLHGYCKEGRLDDALDACREM 626

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDR---MKELFQIMEKYVSPDACSYNILIHGCVVSR 166
               V M +  ++ L+   L   + DR   +  L Q+ ++ + PD   Y  +I     + 
Sbjct: 627 LGRGVAMDLVCYSVLIYGILR--QQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAG 684

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
            L+ A+ ++D MV     P +VT+  LI GLC    +D+A  L  + M   N  P+   +
Sbjct: 685 NLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCRE-MLASNSLPNQNTY 743

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
           A  +  L + G +  A+ + + ++   +  +   Y+ LI    K GR  E   +L  M +
Sbjct: 744 ACFLDYLTSEGNIEKAIQLHDVLLEGFLA-NTVTYNILIRGFCKLGRIQEAAEVLVNMID 802

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            G  P+ ++Y+ +I  +C+  D + A  + + M ++G   + ++YN ++ G C  G+
Sbjct: 803 SGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGE 859



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 100/196 (51%), Gaps = 4/196 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L +  + D+ + +  ++     + P +  +   + +      +E+A+Q+
Sbjct: 704 NVVTYTALINGLCKIGLMDKAELLCREMLASNSL-PNQNTYACFLDYLTSEGNIEKAIQL 762

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNILIHGCVV 164
            D +    +  TV + N L+      G++    E L  +++  +SPD  SY+ +I+    
Sbjct: 763 HDVLLEGFLANTVTY-NILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCR 821

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++A K+++ M+ R + P  V +  LIYG C+   + +A +L++D+MR   VKP+  
Sbjct: 822 RGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMR-RGVKPNRA 880

Query: 225 VFASLIKGLCAVGELS 240
            + SLI G C +  +S
Sbjct: 881 TYNSLIHGTCLMSSVS 896


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 141/258 (54%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++  Y R   L+   ++   M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 158 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANEL 217

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K + P++ ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 218 FDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 277

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++   +D  
Sbjct: 278 KGDLKQAHHLIDE-MSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDV 336

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           +Y++LIS L + G   +   +L+EM   G KP++ TY  +I+ FCK+ D      +L EM
Sbjct: 337 VYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEM 396

Query: 320 GDKGCKANPISYNVILGG 337
              G   + ++YNV++ G
Sbjct: 397 QRDGHVPSVVTYNVLMNG 414



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 127/238 (53%), Gaps = 2/238 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   SYN L++G + 
Sbjct: 113 YEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIR 172

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++ +++   M+   +QP + T+  LI GLC E ++D+A +L ++ M V  + P+  
Sbjct: 173 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDE-MLVKGLVPNSV 231

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM
Sbjct: 232 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 291

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             +G KP+ +TY  LI G CK+ D + AF     M  +  + + + Y  ++ GLC++G
Sbjct: 292 SMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREG 349



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 131/244 (53%), Gaps = 6/244 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 144 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS--AMLASGVQPDVYTYSVL 201

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G     +++DA ++FDEM+ + L P  VTF TLI G C   RVD A+++ + ++   +
Sbjct: 202 INGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QS 260

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   + +LI GLC  G+L  A  + +EM    ++ D   Y++LI    K G  +   
Sbjct: 261 LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAF 320

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
              K M +   + + V Y ALISG C+E     A  +L EM   G K +  +Y +I+   
Sbjct: 321 EHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEF 380

Query: 339 CKDG 342
           CK G
Sbjct: 381 CKKG 384



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 60/118 (50%)

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F  L+   C  G++ +A  V + + +  +      Y++L++   + G  +E   +   M 
Sbjct: 128 FNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 187

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             G +P+  TY+ LI+G CKE   + A  + DEM  KG   N +++  ++ G CK+G+
Sbjct: 188 ASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGR 245



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G      ++   + + G +P+ V+YN L+
Sbjct: 108 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLM 167

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 168 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 210


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/248 (32%), Positives = 127/248 (51%), Gaps = 5/248 (2%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           +++ L   D++ +   Q+    + TL+N     G+   +  L + +E + V PD   YN 
Sbjct: 144 IKKTLYFHDQVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNT 203

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I+    ++ L DA  V+ EM+ + + P +VT+ TLI+G C+  ++ EA  L  + M++ 
Sbjct: 204 IINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNE-MKLK 262

Query: 218 NVKPDGQVFASLIKGLCAVGELSL---ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           N+ PD   F+ LI  L   G+  +   A+ + EEM    +  D   Y+SLI  L K    
Sbjct: 263 NINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHL 322

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
               A+LKEMKE G +P+  +Y  L+ G CK    E A      +  KGC  N   YNV+
Sbjct: 323 ERAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVM 382

Query: 335 LGGLCKDG 342
           + GLCK G
Sbjct: 383 INGLCKAG 390



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 126/250 (50%), Gaps = 10/250 (4%)

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL--DRMKELFQIMEKYVSPD 151
           G  + + R L+   ++   +V+  V  +NT++N  L   KL  D      +++ K +SPD
Sbjct: 177 GETKAVARLLR---KLEGHSVKPDVVMYNTIIN-SLCKNKLLGDACDVYSEMIVKGISPD 232

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR---VDEALK 208
             +Y  LIHG  +  ++++A+ + +EM  + + P + TF  LI  L  E +   VDEA+ 
Sbjct: 233 VVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMS 292

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           L E+ M+  N+ PD   + SLI GLC    L  A+ + +EM    I+ D   Y+ L+  L
Sbjct: 293 LFEE-MKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGL 351

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K GR        + +  +GC  N   YN +I+G CK   F  A  +  +M  KGC  N 
Sbjct: 352 CKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNA 411

Query: 329 ISYNVILGGL 338
           I++  I+  L
Sbjct: 412 ITFRTIICAL 421



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 132/304 (43%), Gaps = 38/304 (12%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           R  P   +F N++    + +     + +F +     +   +   + L+N       +   
Sbjct: 53  RPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLA 112

Query: 138 KELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
             +F  I+++   PDA + N LI G      ++      D++V +  Q   V++GTLI G
Sbjct: 113 FSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLING 172

Query: 197 LCLE---------LRVDEALKLKEDI-------------------------MRVYNVKPD 222
           LC           LR  E   +K D+                         M V  + PD
Sbjct: 173 LCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPD 232

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK---NEFPA 279
              + +LI G C +G++  A  +  EM    I  D   +S LI AL K G+K   +E  +
Sbjct: 233 VVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMS 292

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + +EMK +   P+ VTYN+LI G CK    E A  +L EM + G + +  SY ++L GLC
Sbjct: 293 LFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLC 352

Query: 340 KDGK 343
           K G+
Sbjct: 353 KGGR 356



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 149/288 (51%), Gaps = 12/288 (4%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ + + Y  +I  L +A     + ++L +L+  + + P  +++  +I    + +LL  A
Sbjct: 159 FQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHS-VKPDVVMYNTIINSLCKNKLLGDA 217

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME----KYVSPDACSYNIL 158
             ++ EM    +   V  + TL++     GK   MKE F ++     K ++PD  ++++L
Sbjct: 218 CDVYSEMIVKGISPDVVTYTTLIHGFCIMGK---MKEAFSLLNEMKLKNINPDVYTFSVL 274

Query: 159 IHGCVVS---RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           I         + +++A  +F+EM  + + P +VT+ +LI GLC    ++ A+ L ++ M+
Sbjct: 275 IDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKE-MK 333

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
            + ++PD   +  L+ GLC  G L +A    + ++     ++   Y+ +I+ L KAG   
Sbjct: 334 EHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFG 393

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           E   +  +M+ +GC PN++T+  +I    ++++ + A  IL EM  +G
Sbjct: 394 EAMDLKSKMEGKGCMPNAITFRTIICALSEKDENDKAEKILREMIARG 441



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 121/242 (50%), Gaps = 8/242 (3%)

Query: 109 MSSFNVQMTVK------FFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHG 161
           ++SFN+ + ++       FN +L+  +   +   +  LF+  E   ++PD C+ +ILI+ 
Sbjct: 43  VASFNLMLLMRPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINC 102

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 +  A+ VF  ++KR   P  +T  TLI GLC    + + L   + ++     + 
Sbjct: 103 FCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVV-AQGFQL 161

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +LI GLC  GE      +  ++    ++ D  +Y+++I++L K     +   + 
Sbjct: 162 DQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVY 221

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM  +G  P+ VTY  LI GFC     + AF++L+EM  K    +  +++V++  L K+
Sbjct: 222 SEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKE 281

Query: 342 GK 343
           GK
Sbjct: 282 GK 283


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 164/306 (53%), Gaps = 11/306 (3%)

Query: 43  FRYNLLHYDLIIT---KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARL 98
           F+ N + Y  +I    K+G+ K   EM +     + D ++V  +++  N +I    + +L
Sbjct: 170 FQLNQVSYRTLINGLCKVGQTKAALEMLR-----RIDGKLVRLDVVMYNTIIDGVCKDKL 224

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNI 157
           +  A   + EM +  +  TV  +NTL+      G+L D +  L +++ + ++P   +++I
Sbjct: 225 VNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSI 284

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L+       ++++A  VF  M+K+ ++P +VT+ +L+ G CL   V++A  +   + ++ 
Sbjct: 285 LVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQI- 343

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            V PD   ++ +I G C +  +  A+ + EEM   +I  D   Y+SLI  L K+GR +  
Sbjct: 344 GVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYA 403

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++ EM +RG  PN +TYN+L+   CK    + A  +L ++ D   + +  +YN+++ G
Sbjct: 404 LKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILING 463

Query: 338 LCKDGK 343
           LCK G+
Sbjct: 464 LCKSGR 469



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 151/303 (49%), Gaps = 3/303 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  R +++ Y+ II  + + K+ ++      ++    RI P  + +  +I        L+
Sbjct: 203 KLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMV-AKRICPTVVTYNTLICGLCIMGQLK 261

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            A+ +  +M   N+  TV  F+ L++     GK+   K +F +M +K V P+  +YN L+
Sbjct: 262 DAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLM 321

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +G  +   +  A  +F+ M +  + P + ++  +I G C    VDEA+KL E+ M    +
Sbjct: 322 NGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEE-MHCKQI 380

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   + SLI GLC  G +S AL +  EM       +   Y+SL+ AL K    ++   
Sbjct: 381 FPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIE 440

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +L ++K+   +P+  TYN LI+G CK    + A  + +++   G   +  +YN ++ G C
Sbjct: 441 LLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFC 500

Query: 340 KDG 342
           K G
Sbjct: 501 KKG 503



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 130/306 (42%), Gaps = 35/306 (11%)

Query: 70  LHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL 129
            + L H     P  I F  ++G   +A      + +  +M    +   +   + L+N   
Sbjct: 56  FNHLLHQKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFS 115

Query: 130 TCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
             G       +F  I++K   PDA +   LI G  +   +  A    D+++    Q   V
Sbjct: 116 QLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQV 175

Query: 189 TFGTLIYGLC--------LEL--RVDEAL------------------KLKEDIMRVYN-- 218
           ++ TLI GLC        LE+  R+D  L                  KL  D    Y+  
Sbjct: 176 SYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEM 235

Query: 219 ----VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
               + P    + +LI GLC +G+L  A+G+  +M+ + I      +S L+ A  K G+ 
Sbjct: 236 VAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKV 295

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            E   +   M ++  KPN VTYN+L++G+C   +   A +I + M   G   +  SY+++
Sbjct: 296 KEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIM 355

Query: 335 LGGLCK 340
           + G CK
Sbjct: 356 ISGFCK 361



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 87/173 (50%), Gaps = 1/173 (0%)

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           ++ VF  ++K+  +P  +T  TLI GLCL+  + +AL   + ++ +   + +   + +LI
Sbjct: 123 SFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLAL-GFQLNQVSYRTLI 181

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
            GLC VG+   AL +   +    + +D  +Y+++I  + K    N+      EM  +   
Sbjct: 182 NGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRIC 241

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           P  VTYN LI G C     + A  +L +M  +       ++++++   CK+GK
Sbjct: 242 PTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGK 294



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
           G++  SL+K        S+ + +  +M  + I  +    S LI+   + G  +   ++  
Sbjct: 73  GKILGSLVKA----NHYSIVVSLHRQMEFNGIASNLVTLSILINCFSQLGHNSLSFSVFS 128

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            + ++G +P+++T   LI G C + D   A    D++   G + N +SY  ++ GLCK G
Sbjct: 129 NILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLINGLCKVG 188

Query: 343 K 343
           +
Sbjct: 189 Q 189


>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 495

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 157/334 (47%), Gaps = 11/334 (3%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           + RL      ALQ FK+ + +      HP   + ++   +D  +    R + F+    ++
Sbjct: 76  MKRLWNHGPKALQFFKHLDRH------HP--SYTHSPSSFDHAVDIAARMRDFNSAWALV 127

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130
            +++   R+ P       +   Y       RA++ F  M+   ++  +  FNTLL+    
Sbjct: 128 GRMR-SLRLGPSPKTLAILAERYASNGKPHRAVRTFLSMAEHGIRQDLHSFNTLLDILCK 186

Query: 131 CGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
             +++    L + +     PD  +YNIL +G  + +R   A +V  EMV+R ++PT+VT+
Sbjct: 187 SKRVETAHSLLKTLTSRFRPDTVTYNILANGYCLIKRTPMALRVLKEMVQRGIEPTMVTY 246

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
            T++ G     ++ EA +   + M+    + D   + ++I G    G++  A  V  EMV
Sbjct: 247 NTMLKGYFRSNQIKEAWEFYLE-MKKRKCEIDVVTYTTVIHGFGVAGDVKKAKRVFHEMV 305

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG-CKPNSVTYNALISGFCKEEDF 309
           ++ +  +   Y++LI  L K         + +EM   G C PN VTYN +I G C   D 
Sbjct: 306 KEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYNVVIRGLCHVGDM 365

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           E A   ++ MG+ G +A   +YNV++   C  G+
Sbjct: 366 ERALGFMERMGEHGLRACVQTYNVVIRYFCDAGE 399



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 141/303 (46%), Gaps = 6/303 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R +L  ++ ++  L ++K  +    +L  L   +R  P  + +  +   Y   +    AL
Sbjct: 171 RQDLHSFNTLLDILCKSKRVETAHSLLKTLT--SRFRPDTVTYNILANGYCLIKRTPMAL 228

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
           ++  EM    ++ T+  +NT+L       ++    E +  M+K     D  +Y  +IHG 
Sbjct: 229 RVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGF 288

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
            V+  ++ A +VF EMVK  + P + T+  LI  LC +  V+ A+ + E++ R     P+
Sbjct: 289 GVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCVPN 348

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              +  +I+GLC VG++  ALG  E M    +      Y+ +I     AG   +   +  
Sbjct: 349 VVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEKALEVFG 408

Query: 283 EMKERGCKPNSVTYNALISGFC---KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +M +  C PN  TYN LIS      K ED   A  +L +M D+G      ++N +L GL 
Sbjct: 409 KMGDGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVDRGFLPRKFTFNRVLNGLV 468

Query: 340 KDG 342
             G
Sbjct: 469 ITG 471


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 154/303 (50%), Gaps = 5/303 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV-PKEIIFCNVIGFYGRARLLER 101
           F+ N + Y  +I   G  K+ D    I    K D R+  P   ++  +I    + +L+  
Sbjct: 408 FQLNQVSYATLIN--GVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSE 465

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIH 160
           A  +F EM+   +   V  ++TL+      GKL + +  L +++ K ++PD  +Y IL+ 
Sbjct: 466 AYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVD 525

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                 ++++A  V   M+K  ++P + T+ TL+ G  L   V +A  +  + M +  V 
Sbjct: 526 ALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHV-FNAMSLMGVT 584

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   +  LI G C    +  AL + +EM +  +  D   YSSL+  L K+GR +    +
Sbjct: 585 PDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDL 644

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + EM++RG   + +TYN+LI G CK    + A  + ++M D+G + N  ++ ++L GLCK
Sbjct: 645 IDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCK 704

Query: 341 DGK 343
            G+
Sbjct: 705 GGR 707



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 149/299 (49%), Gaps = 5/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y  II  L + ++  E   +  ++     I    + +  +I  +     L+ A+ +
Sbjct: 446 NVEMYSTIIDALCKYQLVSEAYGLFSEMTVKG-ISADVVTYSTLIYGFCIVGKLKEAIGL 504

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            +EM    +   V+ +  L++     GK+   K +  +M K  V PD  +YN L++G ++
Sbjct: 505 LNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLL 564

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              ++ A  VF+ M    + P + T+  LI G C    VDEAL L ++ M   N+ PD  
Sbjct: 565 VYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKE-MHQKNMVPDTV 623

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIE-MDAGIYSSLISALFKAGRKNEFPAILKE 283
            ++SL+ GLC  G +S    + +EM RD+ +  D   Y+SLI  L K G  ++  A+  +
Sbjct: 624 TYSSLVDGLCKSGRISYVWDLIDEM-RDRGQPADVITYNSLIDGLCKNGHLDKAIALFNK 682

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           MK++G +PN+ T+  L+ G CK    + A  +  ++  KG   +   YNV++ G CK G
Sbjct: 683 MKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQG 741



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 139/285 (48%), Gaps = 3/285 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LK    ++  Y +++  LG+     E + +L  +     + P    +  ++  Y     +
Sbjct: 510 LKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKAC-VKPDVFTYNTLMNGYLLVYEV 568

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           ++A  +F+ MS   V   V  +  L+N       +D    LF+ M +K + PD  +Y+ L
Sbjct: 569 KKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSL 628

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           + G   S R+   W + DEM  R     ++T+ +LI GLC    +D+A+ L    M+   
Sbjct: 629 VDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNK-MKDQG 687

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           ++P+   F  L+ GLC  G L  A  V ++++     +D  IY+ +I    K G   E  
Sbjct: 688 IRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEAL 747

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
            +L +M+E GC PN+VT++ +I+   K+++ + A  +L +M  +G
Sbjct: 748 TMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARG 792



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 148/336 (44%), Gaps = 39/336 (11%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV-PKEIIFCNVIGFYGRARLLER 101
           F+ N + Y  +I   G  ++ D    I    K D R+  P   ++  +I    + +L+  
Sbjct: 94  FQLNQVSYATLIN--GVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSE 151

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIH 160
           A  +F EM+   +   V  ++TL+      GKL     L  +M  K ++P+ C+YNIL+ 
Sbjct: 152 AYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVD 211

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                 ++++A  V   M+K  ++  ++T+ TL+ G  L   V +A  +  + M +  V 
Sbjct: 212 ALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHV-FNAMSLMGVT 270

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDK--------------------------- 253
           PD   +  +I G C +  +  AL + +EM+  +                           
Sbjct: 271 PDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDSFAKMKHYSTAVSLS 330

Query: 254 -------IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
                  I+ D    + LI+     G+     ++L ++ +RG  P++VT N LI G C +
Sbjct: 331 HRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLK 390

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
              + A    D++  +G + N +SY  ++ G+CK G
Sbjct: 391 GQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIG 426



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 96/184 (52%), Gaps = 11/184 (5%)

Query: 166 RRLEDA--WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
           + ++DA    V  +++KR   P  VT  TLI GLCL+ +V EAL   + ++     + + 
Sbjct: 40  QNVDDAVSLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLL-AQGFQLNQ 98

Query: 224 QVFASLIKGLCAVGELSLALG----VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
             +A+LI G+C +G+   A+     +   + +  +EM    Y+++I AL K    +E   
Sbjct: 99  VSYATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEM----YNTIIDALCKYQLVSEAYG 154

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +  EM  +G   N VTY+ LI GFC     + A  +L+ M  K    N  +YN+++  LC
Sbjct: 155 LFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALC 214

Query: 340 KDGK 343
           K+GK
Sbjct: 215 KEGK 218



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 136/310 (43%), Gaps = 14/310 (4%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF------Y 93
           LK    N+  Y++++  L +     E + +L        ++ K  +  NVI +      Y
Sbjct: 196 LKTINPNVCTYNILVDALCKEGKVKEAKSVL-------AVMLKACVKSNVITYSTLMDGY 248

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC 153
                +++A  +F+ MS   V   V  +N ++N      ++D+   LF+ M     P   
Sbjct: 249 FLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPII 308

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
            +N ++      +    A  +   +  + +QP L T   LI   C   ++     +   I
Sbjct: 309 QFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKI 368

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           ++     P      +LIKGLC  G++  AL   ++++    +++   Y++LI+ + K G 
Sbjct: 369 LK-RGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGD 427

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
                 +L+++  R  KPN   Y+ +I   CK +    A+ +  EM  KG  A+ ++Y+ 
Sbjct: 428 TRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYST 487

Query: 334 ILGGLCKDGK 343
           ++ G C  GK
Sbjct: 488 LIYGFCIVGK 497



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 107/222 (48%), Gaps = 2/222 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNI 157
           ++ AL   D++ +   Q+    + TL+N     G     +K L +I  +   P+   YN 
Sbjct: 79  VKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNT 138

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I      + + +A+ +F EM  + +   +VT+ TLIYG C+  ++ EAL L  ++M + 
Sbjct: 139 IIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGL-LNVMVLK 197

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + P+   +  L+  LC  G++  A  V   M++  ++ +   YS+L+   F      + 
Sbjct: 198 TINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKA 257

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             +   M   G  P+  +YN +I+GFCK +  + A  +  EM
Sbjct: 258 QHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEM 299



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 98/199 (49%), Gaps = 3/199 (1%)

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L +I+++   PD  + N LI G  +  ++++A    D+++ +  Q   V++ TLI G+C 
Sbjct: 51  LTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCR 110

Query: 200 ELRVDEALKLKEDI-MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
                 A+K    I  R+   KP+ +++ ++I  LC    +S A G+  EM    I  + 
Sbjct: 111 IGDTRAAIKFLRKIDGRL--AKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANV 168

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             YS+LI      G+  E   +L  M  +   PN  TYN L+   CKE   + A ++L  
Sbjct: 169 VTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAV 228

Query: 319 MGDKGCKANPISYNVILGG 337
           M     K+N I+Y+ ++ G
Sbjct: 229 MLKACVKSNVITYSTLMDG 247


>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rhodocnemis]
          Length = 428

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 139/273 (50%), Gaps = 39/273 (14%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 158 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKS--AMLASGVLPDVYTYSVL 215

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE------- 211
           I+G     +++DA ++FDEM+ + L P  VTF TLI G C   RVD A+++ +       
Sbjct: 216 INGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSL 275

Query: 212 ---------------------------DIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
                                      D M +  +KPD   + +LI G C  G+L  A  
Sbjct: 276 LPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFE 335

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
            ++ M+++ I +D   Y++LIS L + GR  +   +L+EM   G KP++ TY  +I+ FC
Sbjct: 336 HRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFC 395

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           K+ D      +L EM   G   + ++YNV++ G
Sbjct: 396 KKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 428



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 126/239 (52%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   SYN L++G + 
Sbjct: 127 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 186

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++ +++   M+   + P + T+  LI GLC E ++D+A +L ++ M V  + P+G 
Sbjct: 187 LGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFDE-MLVKGLIPNGV 245

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G +  A+ + + M+   +  D   Y++LI  L K G   +   ++ EM
Sbjct: 246 TFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 305

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G KP+  TY  LI G CKE D + AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 306 SMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGR 364



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 48/103 (46%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G      ++   + + G +P+ V+YN L+
Sbjct: 122 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 181

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +    +  F +   M   G   +  +Y+V++ GLCK+ K
Sbjct: 182 NGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESK 224



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 70/177 (39%), Gaps = 17/177 (9%)

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR---------VYNV--------KPDGQV 225
            + TL ++ T+I+ LC    + EA  L + ++          V+          + D  V
Sbjct: 12  FRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYV 71

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F+ LI      G L  A+         K+ +       ++  L K           +E+ 
Sbjct: 72  FSGLITAYLETGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 131

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           E G   +   +N L+  FCK+ D   A ++ D +   G + + +SYN ++ G  + G
Sbjct: 132 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLG 188


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 140/266 (52%), Gaps = 2/266 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           IVP    F  VI  Y      + A++  + M  +N       +NT+L+     G+L   +
Sbjct: 204 IVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDAR 263

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           +L   M+ + + P+  +YNIL++G      L++A  V + M +  L P + T+  LI GL
Sbjct: 264 DLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGL 323

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C E R++EA KL+++ M    + PD   + +LI G     ++S A  + EEM    ++ +
Sbjct: 324 CNEGRIEEAFKLRDE-MENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPN 382

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           A  ++ ++    K G+ ++    + +M+E G  P+ VTYN LI+G+CK  +   AF  +D
Sbjct: 383 AVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMD 442

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
           EMG K  K + ++ N IL  LC++ K
Sbjct: 443 EMGRKNMKMDSVTLNTILRTLCREKK 468



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 149/295 (50%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ I+  L +     + + +L  +K    ++P    +  ++  Y +   L+ A  + + M
Sbjct: 246 YNTILDALCKKGRLGDARDLLMDMK-SRGLLPNRNTYNILVYGYCKMGWLKEAANVIELM 304

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
           +  N+   V  +N L+N     G+++   +L   ME   + PD  SYN LI+GC+   ++
Sbjct: 305 TQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKI 364

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A+K+ +EM ++ ++P  VT   ++   C E ++D+A       M      PD   + +
Sbjct: 365 SEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITK-MEESGFSPDCVTYNT 423

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G C  G +  A    +EM R  ++MD+   ++++  L +  +  E   +L   ++RG
Sbjct: 424 LINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRG 483

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              + V+Y  LI G+ K+ + + A  + DEM +K    + ++YN I+GGLC+ GK
Sbjct: 484 YFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGK 538



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 136/280 (48%), Gaps = 8/280 (2%)

Query: 68  QILHQLKHDTRIVPKEIIFCNVI----GFYGRARLLERALQMFDEMSSFNVQMTVKFFNT 123
           QI  ++K   R+ P  ++ CN +      Y  +  +  + + F++     +   V  FN 
Sbjct: 156 QIFKKMKR-LRLRPN-LLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNI 213

Query: 124 LLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR 182
           ++       K     E   +M KY  SPD  +YN ++       RL DA  +  +M  R 
Sbjct: 214 VIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRG 273

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
           L P   T+  L+YG C    + EA  + E +M   N+ PD   +  LI GLC  G +  A
Sbjct: 274 LLPNRNTYNILVYGYCKMGWLKEAANVIE-LMTQNNLLPDVWTYNMLINGLCNEGRIEEA 332

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
             +++EM   K+  D   Y++LI+   +  + +E   +L+EM E+G KPN+VT+N ++  
Sbjct: 333 FKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKW 392

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +CKE   + A   + +M + G   + ++YN ++ G CK G
Sbjct: 393 YCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAG 432



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 134/267 (50%), Gaps = 5/267 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL---TCGKLDRM 137
           P + +    IG Y ++     A Q+F +M    ++  +   NTLLN  +   +   +   
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFS 192

Query: 138 KELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           +E F    K  + P+  ++NI+I+G  +  + +DA +  + M K    P  VT+ T++  
Sbjct: 193 REAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDA 252

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC + R+ +A  L  D M+   + P+   +  L+ G C +G L  A  V E M ++ +  
Sbjct: 253 LCKKGRLGDARDLLMD-MKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLP 311

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           D   Y+ LI+ L   GR  E   +  EM+     P+ V+YN LI+G  +      AF +L
Sbjct: 312 DVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLL 371

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
           +EM +KG K N +++N+++   CK+GK
Sbjct: 372 EEMSEKGVKPNAVTHNIMVKWYCKEGK 398



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 149/306 (48%), Gaps = 19/306 (6%)

Query: 46  NLLHYDLIITKL---GRA----KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           ++  Y+++I  L   GR     K+ DEM+ +        +++P  + +  +I        
Sbjct: 312 DVWTYNMLINGLCNEGRIEEAFKLRDEMENL--------KLLPDVVSYNTLINGCLEWSK 363

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           +  A ++ +EMS   V+      N ++      GK+D        ME+   SPD  +YN 
Sbjct: 364 ISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNT 423

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM-RV 216
           LI+G   +  + +A++  DEM ++ ++   VT  T++  LC E +++EA KL      R 
Sbjct: 424 LINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRG 483

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           Y +  D   + +LI G    G +  AL + +EM   +I      Y+ +I  L + G+  +
Sbjct: 484 YFI--DEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQ 541

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
             + L E+ E G  P+  TYN ++ G+C+E D E AF   ++M +   K +  + N++L 
Sbjct: 542 AISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLR 601

Query: 337 GLCKDG 342
           GLC +G
Sbjct: 602 GLCMEG 607



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 149/327 (45%), Gaps = 26/327 (7%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + + +  + I+  L R K  +E  ++L   +     +  E+ +  +I  Y +   ++
Sbjct: 447 KNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFI-DEVSYGTLIVGYFKDGNVD 505

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILI 159
           RAL+++DEM    +  +   +N ++     CGK ++ + +L +++E  + PD  +YN ++
Sbjct: 506 RALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTIL 565

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           HG      +E A++  ++MV+   +P + T   L+ GLC+E  +++ALKL    +     
Sbjct: 566 HGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVS-KGK 624

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
             D   + +LI  LC  G L  A  +  EM   ++  D   Y+++I+AL  +GR  E   
Sbjct: 625 AIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEE 684

Query: 280 ILKEMKERGCKPNS-----------------------VTYNALISGFCKEEDFEAAFTIL 316
            + +M E+G  P                         V Y+  I   C E  ++ A  I 
Sbjct: 685 FMSKMLEKGXLPXQVLQLDXNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIF 744

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
            E   KG   +  +Y  ++ GL K  K
Sbjct: 745 GESKQKGITVDKSTYINLMDGLIKRRK 771



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 140/304 (46%), Gaps = 3/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + N + +++++    +    D+    + +++ ++   P  + +  +I  Y +A  + 
Sbjct: 377 KGVKPNAVTHNIMVKWYCKEGKMDDASNTITKME-ESGFSPDCVTYNTLINGYCKAGNMG 435

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
            A +  DEM   N++M     NT+L       KL+   +L     K     D  SY  LI
Sbjct: 436 EAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLI 495

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G      ++ A K++DEM ++ + P+ VT+  +I GLC   + ++A+    +++    +
Sbjct: 496 VGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLES-GL 554

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   + +++ G C  G++  A     +MV +  + D    + L+  L   G   +   
Sbjct: 555 LPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALK 614

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +      +G   ++VTYN LI+  CKE   + AF +L EM +K    +  +YN I+  L 
Sbjct: 615 LFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALT 674

Query: 340 KDGK 343
             G+
Sbjct: 675 DSGR 678


>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 418

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 135/244 (55%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y R   L+   ++   M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 169 PSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++K + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCR 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I++D  
Sbjct: 289 KGDLKQARDLIDE-MSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP+++TY  +I+ FCK+ D      +L EM
Sbjct: 348 GYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKEM 407

Query: 320 GDKG 323
              G
Sbjct: 408 QRDG 411



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/242 (33%), Positives = 129/242 (53%), Gaps = 2/242 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIH 160
           A  +F+ ++ + ++ +V  FNTL+N  +  G LD    L   M    V PD  +Y++LI+
Sbjct: 155 AQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLIN 214

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     +++DA ++FDEM+ + L P  VTF TLI G C   RVD A+++ + ++   ++ 
Sbjct: 215 GLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLS 273

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   + +LI GLC  G+L  A  + +EM    ++ D   Y++LI    K G        
Sbjct: 274 PDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEH 333

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            K M +   + + V Y ALISG C+E  +  A  +L EM   G K + I+Y +I+   CK
Sbjct: 334 RKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCK 393

Query: 341 DG 342
            G
Sbjct: 394 KG 395



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 128/239 (53%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   S+N L++G + 
Sbjct: 124 YEEILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIR 183

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++ +++   M    +QP + T+  LI GLC E ++D+A +L ++++    + P+G 
Sbjct: 184 LGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD-KGLVPNGV 242

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ + ++M+   +  D   Y++LI  L + G   +   ++ EM
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEM 302

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G KP+ +TY  LI G CKE D E AF     M  +  + + + Y  ++ GLC++G+
Sbjct: 303 SMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGR 361



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 112/222 (50%), Gaps = 2/222 (0%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           H + + P    +  +I    +   ++ A ++FDEM    +      F TL++     G++
Sbjct: 198 HASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRV 257

Query: 135 DRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           D   E++ Q++ + +SPD  +YN LI+G      L+ A  + DEM  + L+P  +T+ TL
Sbjct: 258 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTL 317

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G C E  ++ A + ++ +++  N++ D   + +LI GLC  G    A  V  EM+   
Sbjct: 318 IDGXCKEGDLETAFEHRKRMIQE-NIQLDDVGYTALISGLCQEGRYLDAEKVLREMLSVG 376

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
           ++ D   Y+ +I+   K G       +LKEM+  G  P+ VT
Sbjct: 377 LKPDTITYTMIINEFCKKGDVWTGSKLLKEMQRDGQMPSVVT 418



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G      ++   + + G +P+ V++N L+
Sbjct: 119 LVWGFYEEILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESK 221


>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
 gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
          Length = 740

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 161/339 (47%), Gaps = 45/339 (13%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +L  Y LII  L ++K  D+ +++L Q+ +  TR  P  I + ++I  Y  + +   +++
Sbjct: 117 DLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTR--PNSITYNSLIHGYSISGMWNESVR 174

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
           +F +MSS  V  TV   N+ ++     G+ +  K +F  M  K   PD  SY+ ++HG  
Sbjct: 175 VFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYA 234

Query: 164 VSR-------------------------------------RLEDAWKVFDEMVKRRLQPT 186
            +                                       ++ A  +F++M  + + P 
Sbjct: 235 TATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPD 294

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
            VTF T+I  LC   R+D+AL  K + M    V P   V+  LI+G C  GEL  A  + 
Sbjct: 295 TVTFATVISSLCRIGRLDDALH-KFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELI 353

Query: 247 EEMVRDKIEMDAGI--YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
            EM+   I    G+  +SS+I+ L K GR  E   I+  M + G +PN VT+N+L+ G+C
Sbjct: 354 SEMMNKDIP-PPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYC 412

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              + E AF +LD M   G + N   Y  ++ G CK+G+
Sbjct: 413 LVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGR 451



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 132/265 (49%), Gaps = 3/265 (1%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P + +F  +I  Y R  ++++A+ +F++M +  +      F T+++     G+LD   
Sbjct: 256 IAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDAL 315

Query: 139 ELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT-FGTLIYG 196
             F  +++  V P    Y  LI GC     L  A ++  EM+ + + P  V  F ++I  
Sbjct: 316 HKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINN 375

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC E RV E   +  D+M     +P+   F SL++G C VG +  A  + + M    IE 
Sbjct: 376 LCKEGRVAEGKDIM-DMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEP 434

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +  IY +L+    K GR ++   + ++M  +G KP SV Y+ ++ G  +     AA  + 
Sbjct: 435 NCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMF 494

Query: 317 DEMGDKGCKANPISYNVILGGLCKD 341
            EM + G   +  +Y V+LGGLC++
Sbjct: 495 HEMIESGTTVSIHTYGVVLGGLCRN 519



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 143/296 (48%), Gaps = 4/296 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++++I    R  M D+   I   ++ +  ++P  + F  VI    R   L+ AL  F+ M
Sbjct: 263 FNILINAYARCGMMDKAMLIFEDMQ-NKGMIPDTVTFATVISSLCRIGRLDDALHKFNHM 321

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSY-NILIHGCVVSRR 167
               V  +   +  L+      G+L + KEL  ++M K + P    Y + +I+      R
Sbjct: 322 VDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGR 381

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           + +   + D MV+   +P +VTF +L+ G CL   ++EA  L  D M    ++P+  ++ 
Sbjct: 382 VAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALL-DAMASIGIEPNCYIYG 440

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +L+ G C  G +  AL V  +M+   ++  + +YS ++  LF+A R      +  EM E 
Sbjct: 441 TLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIES 500

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G   +  TY  ++ G C+    + A  +L+++     K + I++N+++  + K G+
Sbjct: 501 GTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGR 556



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERAL----QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           PK  I       +G A   +  L     +F+ M +  +      FN L+N    CG +D+
Sbjct: 219 PKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDK 278

Query: 137 MKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              +F+ M+ K + PD  ++  +I       RL+DA   F+ MV   + P+   +G LI 
Sbjct: 279 AMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQ 338

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C    + +A +L  ++M      P  + F+S+I  LC  G ++    + + MV+    
Sbjct: 339 GCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQR 398

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            +   ++SL+      G   E  A+L  M   G +PN   Y  L+ G+CK    + A T+
Sbjct: 399 PNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTV 458

Query: 316 LDEMGDKGCKANPISYNVILGGL 338
             +M  KG K   + Y++IL GL
Sbjct: 459 FRDMLHKGVKPTSVLYSIILHGL 481



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 136/303 (44%), Gaps = 45/303 (14%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKH--DTRIVPKEIIF-CNVIGFYGRARLLERALQMF 106
           +  +I+ L R    D+    LH+  H  D  + P E ++ C + G      L+ +A ++ 
Sbjct: 298 FATVISSLCRIGRLDDA---LHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELV-KAKELI 353

Query: 107 DEMSSFNVQM-TVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            EM + ++    VK+F++++N     G++   K++  +M +    P+  ++N L+ G  +
Sbjct: 354 SEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCL 413

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +E+A+ + D M    ++P    +GTL+ G C   R+D+AL +  D++    VKP   
Sbjct: 414 VGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLH-KGVKPTSV 472

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRD-------------------------------- 252
           +++ ++ GL      + A  +  EM+                                  
Sbjct: 473 LYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKL 532

Query: 253 ---KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
               ++ D   ++ +ISA+FK GR+ E   +   +   G  PN  TY+ +I+   KEE +
Sbjct: 533 FAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESY 592

Query: 310 EAA 312
           E A
Sbjct: 593 EEA 595



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 163/349 (46%), Gaps = 27/349 (7%)

Query: 3   TSSIRLACLPRLQKDPKLAL----QLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLG 58
           T +I + C  R+ + P L L    +L KN    P+D        F Y+L++  +   ++ 
Sbjct: 16  TYNILIDCYRRVHR-PDLGLAIVGRLLKN-GLGPDD--------FSYSLIYGFVKDGEVD 65

Query: 59  RAK-MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT 117
           +A  +F EM +          ++PK +I  ++I    + + +++A  +  +M    +   
Sbjct: 66  KAHCLFLEMME--------QGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPD 117

Query: 118 VKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFD 176
           +  ++ +++       +D+ + +  Q++E    P++ +YN LIHG  +S    ++ +VF 
Sbjct: 118 LFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFK 177

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
           +M    + PT+    + I+ L    R +EA K   D M +   KPD   +++++ G    
Sbjct: 178 QMSSCGVIPTVDNCNSFIHALFKHGRTNEA-KCIFDSMVLKGPKPDIISYSTMLHGYATA 236

Query: 237 GELSLA--LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
            +  LA    +   M+   I  +  +++ LI+A  + G  ++   I ++M+ +G  P++V
Sbjct: 237 TDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTV 296

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           T+  +IS  C+    + A    + M D G   +   Y  ++ G C  G+
Sbjct: 297 TFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGE 345



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 95/198 (47%), Gaps = 2/198 (1%)

Query: 146 KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
           ++  P   +YNILI       R +    +   ++K  L P   ++ +LIYG   +  VD+
Sbjct: 8   RHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDK 66

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           A  L  ++M    V P   +  S+IK LC + E+  A  + ++MV   I  D   YS +I
Sbjct: 67  AHCLFLEMME-QGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLII 125

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
             L K+   ++   +L++M E G +PNS+TYN+LI G+     +  +  +  +M   G  
Sbjct: 126 DGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVI 185

Query: 326 ANPISYNVILGGLCKDGK 343
               + N  +  L K G+
Sbjct: 186 PTVDNCNSFIHALFKHGR 203


>gi|242084242|ref|XP_002442546.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
 gi|241943239|gb|EES16384.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
          Length = 735

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 149/303 (49%), Gaps = 5/303 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI-IFCNVIGFYGRARLLER 101
           +R+    +D ++  L R ++ D  ++++  +    R +P+    F +++  Y RA  L  
Sbjct: 122 YRHAPEVFDEMLVLLSRTRLHDPARRVMRLMIR--RGMPRGTRQFAHLMLSYSRAGKLRS 179

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIH 160
           A+++   M        +   N  +N  +  G++D+  E  + M +  V PD  +YN LI 
Sbjct: 180 AMRVLQLMQKDGCAPDICICNMAVNVLVVAGRIDKALEFAERMRRVGVDPDVVTYNCLIK 239

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G   +RR+ DA ++   M++    P  +++ T++  LC E RV +   L E  M    + 
Sbjct: 240 GLCGARRIVDALEMISSMLQNGCLPDKISYFTVMSFLCKEKRVADVQNLLER-MSDAGIF 298

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   +  LI GL   G    AL    E    +  +D   YS+ + +    GR  E   I
Sbjct: 299 PDQVTYNMLIHGLAKHGHADEALSFLRESEGKRFRVDEVGYSATVHSFCLNGRMAEAKEI 358

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + EM  +GC+P+ VTY+A++ GFC+  + + A  ++  M   GCK N +++  +L GLCK
Sbjct: 359 IGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCK 418

Query: 341 DGK 343
            GK
Sbjct: 419 VGK 421



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 131/262 (50%), Gaps = 11/262 (4%)

Query: 87  CNVIGFYGRARLLERALQMFDEM-SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145
           C + G  G  R+++ AL+M   M  +  +   + +F  +      C K  R+ ++  ++E
Sbjct: 236 CLIKGLCGARRIVD-ALEMISSMLQNGCLPDKISYFTVM---SFLC-KEKRVADVQNLLE 290

Query: 146 KY----VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
           +     + PD  +YN+LIHG       ++A     E   +R +   V +   ++  CL  
Sbjct: 291 RMSDAGIFPDQVTYNMLIHGLAKHGHADEALSFLRESEGKRFRVDEVGYSATVHSFCLNG 350

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
           R+ EA ++  +++     +PD   +++++ G C +GEL  A  + + M ++  + +   +
Sbjct: 351 RMAEAKEIIGEMIS-KGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTH 409

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           ++L++ L K G+ +E   +L + +E    P+++TY+ ++ GF +E   + +  ++ +M  
Sbjct: 410 TALLNGLCKVGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDVVMQMLQ 469

Query: 322 KGCKANPISYNVILGGLCKDGK 343
           KG     +  N+++  LC + K
Sbjct: 470 KGFFPTTVEINLLIHALCNERK 491



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 124/270 (45%), Gaps = 16/270 (5%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  V+  + R   L++A +M   M     +        LLN     GK     EL
Sbjct: 369 PDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAWEL 428

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
             +  E++ +P A +Y++++HG     +L+++  V  +M+++   PT V    LI+ LC 
Sbjct: 429 LNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDVVMQMLQKGFFPTTVEINLLIHALCN 488

Query: 200 ELRVDEALKLKED------IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           E +  +A    E        + V N       F ++I G    G+L  AL + ++M    
Sbjct: 489 ERKPADAKDFMEQCQSKGCFINVVN-------FTTVIHGFSRQGDLESALSLLDDMYLTN 541

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
              D   Y+ ++ AL + G+  E  +++++M  RG  P  VTY  +I  +C++   E   
Sbjct: 542 RHPDVVTYTVVVDALGRKGKMKEATSLVEKMLNRGLHPTPVTYRTVIHRYCEKGAVEDLL 601

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +LD+M  K  +    +YN ++  LC  GK
Sbjct: 602 NLLDKMLAK--EGFSSAYNQVIEKLCAFGK 629



 Score = 41.6 bits (96), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 15/112 (13%)

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL------KEDIMRVYNVK 220
           ++++A  + ++M+ R L PT VT+ T+I+  C +  V++ L L      KE     YN  
Sbjct: 561 KMKEATSLVEKMLNRGLHPTPVTYRTVIHRYCEKGAVEDLLNLLDKMLAKEGFSSAYN-- 618

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
                   +I+ LCA G+LS A  +  +++R   + DA     L+ +    G
Sbjct: 619 -------QVIEKLCAFGKLSEANNLLSKVLRTASKRDAQTCHILMDSFLNRG 663


>gi|357512639|ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240852|gb|ABD32710.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355501623|gb|AES82826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 451

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 168/342 (49%), Gaps = 12/342 (3%)

Query: 4   SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMF 63
           S  R+  L   Q DP LA ++F   +  PN         FR+N   Y ++I K GR+K F
Sbjct: 41  SPTRVQKLIASQSDPLLAKEIFDYASLQPN---------FRHNYSTYLILILKFGRSKHF 91

Query: 64  DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT 123
             +  +L +LK ++       +F  +I  YG A L ++AL  F  M  FN++   K  N 
Sbjct: 92  SLLDDLLRRLKSESSQPITPTLFSYLIKIYGEANLPDKALNTFYIMLQFNIKPLTKHLNR 151

Query: 124 LLNPKLTCGKLDRMK-ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
           +L+  ++     R   +LF+   K+ V PD  SYNIL+    ++  +  A+ +F++M KR
Sbjct: 152 ILDILVSHRNYLRPAFDLFKDAHKHGVFPDTKSYNILMRAFCLNGDISIAYTLFNKMFKR 211

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
            + P + ++  L+  LC + +V+ A+ L ED++    V PD   + +L+  LC   +L  
Sbjct: 212 DVVPDIQSYRILMQALCRKSQVNGAVDLFEDMLNKGFV-PDSFTYTTLLNSLCRKKKLRE 270

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           A  +   M       D   Y+++I    + GR ++   ++ +M+  GC PN V+Y  L++
Sbjct: 271 AYKLLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVIDDMQANGCLPNLVSYRTLVN 330

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G C     + A   ++EM  KG   +    + ++ G C  G+
Sbjct: 331 GLCHLGMLDEATKYVEEMLSKGFSPHFAVIHALVKGFCNVGR 372



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 103/219 (47%), Gaps = 2/219 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIH 160
           A  +F++M   +V   ++ +  L+       +++   +LF+ ++ K   PD+ +Y  L++
Sbjct: 201 AYTLFNKMFKRDVVPDIQSYRILMQALCRKSQVNGAVDLFEDMLNKGFVPDSFTYTTLLN 260

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                ++L +A+K+   M  +   P +V + T+I G C E R  +A K+ +D M+     
Sbjct: 261 SLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVIDD-MQANGCL 319

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   + +L+ GLC +G L  A    EEM+         +  +L+      GR  E   +
Sbjct: 320 PNLVSYRTLVNGLCHLGMLDEATKYVEEMLSKGFSPHFAVIHALVKGFCNVGRIEEACGV 379

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           L +  E    P+  T+  ++   C+ +D      +L+E+
Sbjct: 380 LTKSLEHREAPHKDTWMIIVPQICEVDDGVKIDGVLEEV 418


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 114/212 (53%), Gaps = 4/212 (1%)

Query: 133 KLDRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
           K +R  E + ++E+ V     PD  +Y  LI G   S++ +DA +VF+++V R  +P +V
Sbjct: 66  KAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVV 125

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           T+  LI GLC E R+ EA+ L   +++  +  P+   + SLI G C +G++  A+ + E 
Sbjct: 126 TYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLER 185

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M       D   Y++L++   K  R ++   +L +M  +G  PN VT+ +L+ G C+E  
Sbjct: 186 MAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENR 245

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
              A  IL EM  K C     +YN IL G C+
Sbjct: 246 LSDAVHILGEMRRKSCSPTVYTYNTILDGYCR 277



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 108/195 (55%), Gaps = 2/195 (1%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P A +YN LI G   + R  +A+ + +EMV     P + T+ TLI G C   + D+AL++
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI-YSSLISAL 268
            E ++     +PD   ++ LI GLC  G L  A+ +   M++    M   + Y+SLIS  
Sbjct: 112 FEQLV-ARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGF 170

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            + G+ +E   +L+ M E G  P+ VTY  L++GFCK    + A+ +L++M  KG   N 
Sbjct: 171 CRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNV 230

Query: 329 ISYNVILGGLCKDGK 343
           +++  ++ GLC++ +
Sbjct: 231 VTFTSLMDGLCRENR 245



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 126/268 (47%), Gaps = 5/268 (1%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
            D   VP  + + ++I    +A     A  + +EM        +  + TL+       K 
Sbjct: 46  QDAEEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKS 105

Query: 135 DRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR-RLQPTLVTFGT 192
           D    +F Q++ +   PD  +Y+ LI G     RL++A  +F  M+K     P  VT+ +
Sbjct: 106 DDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNS 165

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           LI G C   ++DEA+ L E +       PD   + +L+ G C +  L  A  +  +M R 
Sbjct: 166 LISGFCRMGKMDEAMNLLERMAET-GSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRK 224

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
            +  +   ++SL+  L +  R ++   IL EM+ + C P   TYN ++ G+C+    E A
Sbjct: 225 GLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEA 284

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCK 340
              + E  D  C  N +S+N+++ GLCK
Sbjct: 285 RKFMLEEMD--CPPNVVSFNIMIRGLCK 310



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 146/298 (48%), Gaps = 6/298 (2%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           + Y+ +I+ L +A+   E   +L ++ + +  +P    +  +I  + +++  + AL++F+
Sbjct: 55  VTYNSLISGLCKAERASEAYDLLEEMVY-SGCIPDIFTYTTLITGFCKSKKSDDALRVFE 113

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PDACSYNILIHGCVVS 165
           ++ +   +  V  ++ L++     G+L    +LF  M K  S  P+  +YN LI G    
Sbjct: 114 QLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRM 173

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            ++++A  + + M +    P +VT+ TL+ G C   R+D+A  L   + R   + P+   
Sbjct: 174 GKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTR-KGLTPNVVT 232

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F SL+ GLC    LS A+ +  EM R         Y++++    +  +  E    +  ++
Sbjct: 233 FTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFM--LE 290

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           E  C PN V++N +I G CK      A  +++E   + C  + + Y  ++  LC++ K
Sbjct: 291 EMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKK 348



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 144/296 (48%), Gaps = 17/296 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF-CNVIGFYGRARLLERALQ 104
           ++  Y  +IT   ++K  D+  ++  QL       P  + + C + G     RL E A+ 
Sbjct: 88  DIFTYTTLITGFCKSKKSDDALRVFEQLVARG-FRPDVVTYSCLIDGLCKEGRLKE-AID 145

Query: 105 MFDEM-SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGC 162
           +F  M  S +       +N+L++     GK+D    L + M E   SPD  +Y  L++G 
Sbjct: 146 LFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGF 205

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
               RL+DA+ + ++M ++ L P +VTF +L+ GLC E R+ +A+ +  + MR  +  P 
Sbjct: 206 CKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGE-MRRKSCSPT 264

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG----IYSSLISALFKAGRKNEFP 278
              + +++ G C V +L  A     E      EMD       ++ +I  L K  R +E  
Sbjct: 265 VYTYNTILDGYCRVNQLEEARKFMLE------EMDCPPNVVSFNIMIRGLCKVNRSSEAM 318

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK-GCKANPISYNV 333
            +++E + R C P+ V Y  +I   C+E+  + A  +  +M ++ GC  N I+Y+ 
Sbjct: 319 ELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITYST 374



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 128/261 (49%), Gaps = 5/261 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + FR +++ Y  +I  L +     E   +  ++      +P  + + ++I  + R   ++
Sbjct: 118 RGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMD 177

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
            A+ + + M+       V  + TL+N      +LD   +L  Q+  K ++P+  ++  L+
Sbjct: 178 EAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLM 237

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G     RL DA  +  EM ++   PT+ T+ T++ G C   +++EA K   + M   + 
Sbjct: 238 DGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLEEM---DC 294

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   F  +I+GLC V   S A+ + EE  R +   D  +Y+++I  L +  + +E   
Sbjct: 295 PPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACR 354

Query: 280 ILKEM-KERGCKPNSVTYNAL 299
           + ++M +E GC PNS+TY+  
Sbjct: 355 VYRKMLEEPGCLPNSITYSTF 375



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 60/95 (63%), Gaps = 1/95 (1%)

Query: 250 VRDKIEMDAGI-YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           V+D  E+   + Y+SLIS L KA R +E   +L+EM   GC P+  TY  LI+GFCK + 
Sbjct: 45  VQDAEEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKK 104

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + A  + +++  +G + + ++Y+ ++ GLCK+G+
Sbjct: 105 SDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGR 139


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 133/298 (44%), Gaps = 41/298 (13%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++    + +       + ++M SF +   V   N L+N   +   L+R+   
Sbjct: 67  PSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILIN---SFCHLNRLGFA 123

Query: 141 FQIMEKYV----SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           F ++ K +     PD  ++  LI G  V  ++ DA  +FD+M+    QP +VT+GTLI G
Sbjct: 124 FSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLING 183

Query: 197 LCLELRVDEALKL-------------------------KEDIMRVYN---------VKPD 222
           LC     + A++L                            +   +N         + PD
Sbjct: 184 LCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPD 243

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + SLI  LC + E      +  +M+  KI  D  I+S+++ AL K G+  E   ++ 
Sbjct: 244 IFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVD 303

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            M  RG +PN VTYNAL+ G C + + + A  + D M   G   N ISYN ++ G CK
Sbjct: 304 MMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCK 361



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 3/244 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
           ++ A+++FD M        V  +NTL+N      ++D+   LF+ M +K + P+  +YN 
Sbjct: 330 MDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNT 389

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L+H C V R L+DA  +F EMV     P L T+  L+  LC +  +DEA+ L + I    
Sbjct: 390 LMHXCHVGR-LQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTI-EGS 447

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N+ PD Q++  +I G+C  GEL  A  +   +    +  +   Y+ +I+ L + G  +E 
Sbjct: 448 NMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEA 507

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +  EM   GC P+  TYN +  G  + ++   A  +L EM  +G  A+  +  +++  
Sbjct: 508 NKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEM 567

Query: 338 LCKD 341
           LC D
Sbjct: 568 LCDD 571



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 120/239 (50%), Gaps = 3/239 (1%)

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
           + ++M +  +   V  F+T+++     GK+    ++  +M  + V P+  +YN L+ G  
Sbjct: 266 LLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHC 325

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
           +   +++A KVFD MV     P ++++ TLI G C   R+D+A  L E++ +   + P+ 
Sbjct: 326 LQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQ-KELIPNT 384

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +L+   C VG L  A+ +  EMV      D   Y  L+  L K    +E  A+LK 
Sbjct: 385 VTYNTLMH-XCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKT 443

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++     P+   Y  +I G C+  + EAA  I   +  KG + N  +Y +++ GLC+ G
Sbjct: 444 IEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRG 502



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 123/246 (50%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           L+ AL  F+ M   +   +   FN LL       +   +  L   M+ + + PD  + NI
Sbjct: 50  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 109

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+      RL  A+ V  +++K   QP   TF TLI GLC+E ++ +AL L  D M   
Sbjct: 110 LINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLF-DKMIGE 168

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             +P+   + +LI GLC VG  + A+ +   M +   + D  +Y+S+I +L K  +  E 
Sbjct: 169 GFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEA 228

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +  +M  +G  P+  TY +LI   C   +++   T+L++M +     + + ++ ++  
Sbjct: 229 FNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDA 288

Query: 338 LCKDGK 343
           LCK+GK
Sbjct: 289 LCKEGK 294



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 139/302 (46%), Gaps = 4/302 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ N++ Y  +I  L +    +   ++L  ++      P  +++ ++I    + R +  A
Sbjct: 170 FQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQG-NCQPDVVVYTSIIDSLCKDRQVTEA 228

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
             +F +M    +   +  + +L++      +   +  L  Q++   + PD   ++ ++  
Sbjct: 229 FNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDA 288

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                ++ +A  V D M+ R ++P +VT+  L+ G CL+  +DEA+K+  D M      P
Sbjct: 289 LCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVF-DTMVHNGYAP 347

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   + +LI G C +  +  A  + EEM + ++  +   Y++L+      GR  +  A+ 
Sbjct: 348 NVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXC-HVGRLQDAIALF 406

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM   G  P+  TY  L+   CK+   + A  +L  +       +   Y +++ G+C+ 
Sbjct: 407 HEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRA 466

Query: 342 GK 343
           G+
Sbjct: 467 GE 468


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 130/259 (50%), Gaps = 5/259 (1%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM--EK 146
           V+    +A +L +AL++F+ M S +   ++  +N L+N +   G+  +  +LFQ M  EK
Sbjct: 16  VVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMKREK 75

Query: 147 YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA 206
            V PD  +YN LI G   S   E A K+  EM  + +   + T+ ++I  L  E + +E+
Sbjct: 76  RVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEES 135

Query: 207 LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266
            K+ E++M      PD   F  +++G      +  A  V + MV    + D   Y  LI 
Sbjct: 136 YKVLEEMMAA-GCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIH 194

Query: 267 ALFKAGRKNEFPAILKEMKER--GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
            L K G+ +E   IL EM  R  G  PN +T++ LI G C+  + E A  +   M + GC
Sbjct: 195 GLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGC 254

Query: 325 KANPISYNVILGGLCKDGK 343
           K N  +Y  ++ GLC+  K
Sbjct: 255 KPNKYTYTTLIAGLCRAEK 273



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 140/306 (45%), Gaps = 39/306 (12%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K    N+  Y  II  L +    +E  ++L ++       P    F  V+  + R+  +E
Sbjct: 110 KNIAANVFTYSSIIKSLVKEAKPEESYKVLEEM-MAAGCNPDVFAFNGVMQGFARSNNME 168

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIH 160
           +A +++  M                                  +E    PD  SY+ILIH
Sbjct: 169 KAREVYQHM----------------------------------VESGYKPDNVSYHILIH 194

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQ--PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           G     +L+++ K+  EM  R     P ++TF TLI+GLC    +++AL++   ++    
Sbjct: 195 GLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEA-G 253

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
            KP+   + +LI GLC   ++  A  + E+M +  I  DA  Y+SLI+   K G  +E  
Sbjct: 254 CKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAE 313

Query: 279 AILKEMK-ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            + +EM    G +P  VT+N LI GFCK      A  ++ EMG KG  A+  +Y +++ G
Sbjct: 314 KLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAG 373

Query: 338 LCKDGK 343
           L +  K
Sbjct: 374 LSRATK 379



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 95/190 (50%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +Y+ ++     +  L  A +VF+ M      P+LVT+  LI   C      +AL L + +
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
            R   V+PD   + +LI GLC+ G    A  +  EM    I  +   YSS+I +L K  +
Sbjct: 72  KREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAK 131

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   +L+EM   GC P+   +N ++ GF +  + E A  +   M + G K + +SY++
Sbjct: 132 PEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHI 191

Query: 334 ILGGLCKDGK 343
           ++ GL K GK
Sbjct: 192 LIHGLAKIGK 201



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 147/301 (48%), Gaps = 4/301 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  ++ ++    R+   ++ +++ +Q   ++   P  + +  +I    +   L+ +L++
Sbjct: 150 DVFAFNGVMQGFARSNNMEKAREV-YQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKI 208

Query: 106 FDEMS--SFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGC 162
             EM+  +      V  F+TL++     G+L++  E+F  ++E    P+  +Y  LI G 
Sbjct: 209 LSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGL 268

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             + ++  A ++F++M +  + P  V + +LI G C    +DEA KL  ++     ++P 
Sbjct: 269 CRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPT 328

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              F +LI G C +G+L  A  +  EM    +  D   Y  LI+ L +A + +E   + K
Sbjct: 329 IVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYK 388

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +M+E+    + V+  + + G CK  + + A+ + +     G   NP ++ ++   L K G
Sbjct: 389 QMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLG 448

Query: 343 K 343
           +
Sbjct: 449 R 449



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 126/273 (46%), Gaps = 4/273 (1%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLK-HDTRIVPKEIIFCNVIGFYGRARLLERALQMF 106
           + Y ++I  L +    DE  +IL ++       VP  I F  +I    R   LE+AL++F
Sbjct: 187 VSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVF 246

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVS 165
             M     +     + TL+       K+ + +ELF+ M +  + PDA +YN LI G    
Sbjct: 247 GSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKR 306

Query: 166 RRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +++A K++ EM     LQPT+VTF TLI G C   ++  A +L  + M    +  D  
Sbjct: 307 GSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAE-MGTKGLAADTC 365

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LI GL    +L  AL V ++M   K  +D     S +  L K G  ++  A+ +  
Sbjct: 366 TYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEAT 425

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           ++ G  PN  T+  L     K    E A  +++
Sbjct: 426 RKSGAVPNPETFRILSESLIKLGRVEDAQKLME 458



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M + K  +    Y  ++ +L KAG   +   + + MK   C P+ VTYN LI+  C   +
Sbjct: 1   MSKAKCAIGGDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGE 60

Query: 309 FEAAFTILDEMG-DKGCKANPISYNVILGGLCKDG 342
           F  A  +   M  +K  + +  +YN ++ GLC  G
Sbjct: 61  FGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSG 95


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 148/312 (47%), Gaps = 20/312 (6%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L  A   ++  Q+  ++K +  I P   ++  +I  + +A  +E+A   FDEM
Sbjct: 225 YSKVIGYLCNASKVEKAFQLFQEMKRNG-IAPDVYVYTTLIDSFCKAGFIEQARNWFDEM 283

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
                   V  +  L++  L   K+ +  E++++M  K  +P+  +Y  LI G   + ++
Sbjct: 284 ERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKI 343

Query: 169 EDAWKVFDEMVKRRLQ-----------------PTLVTFGTLIYGLCLELRVDEALKLKE 211
           E A +++  M K  ++                 P + T+G L+ GLC   +V EA  L +
Sbjct: 344 EKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLK 403

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
             M V   +P+  V+ +LI G C  G+L  A  V   M+    + +   YSSLI  LFK 
Sbjct: 404 S-MSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKD 462

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
            R +    +L +M E  C PN V Y  +I G CK    + A+ ++  M +KGC  N ++Y
Sbjct: 463 KRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTY 522

Query: 332 NVILGGLCKDGK 343
             ++ G  K G+
Sbjct: 523 TAMIDGFGKSGR 534



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 128/306 (41%), Gaps = 44/306 (14%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           VP  +++  +I     A L E A+     M + +    V  +  LL   L   KL R K 
Sbjct: 39  VPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKR 98

Query: 140 LFQIMEK---YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           +  +M     Y SP    +N L+H    S     A+K+  +MV+   QP  V +  LI G
Sbjct: 99  ILSMMITEGCYPSPRI--FNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGG 156

Query: 197 LCLELR-----VDEALKLKEDIM-------------------------RVYNVK------ 220
           +C         +D A K   +++                         + YNV       
Sbjct: 157 ICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSK 216

Query: 221 ---PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
              PD   ++ +I  LC   ++  A  + +EM R+ I  D  +Y++LI +  KAG   + 
Sbjct: 217 GFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQA 276

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
                EM+  GC PN VTY ALI  + K      A  + + M  KGC  N ++Y  ++ G
Sbjct: 277 RNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDG 336

Query: 338 LCKDGK 343
           LCK GK
Sbjct: 337 LCKAGK 342



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 139/292 (47%), Gaps = 20/292 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I    +++   +  ++ +++       P  + +  +I    +A  +E+A Q+
Sbjct: 291 NVVTYTALIHAYLKSRKVSKANEV-YEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQI 349

Query: 106 FDEMSSFNVQ-----MTVKFFNTLLNPK--LTCGKL-DRMKELFQIME-----KYVSPDA 152
           +  M   NV+     M  +  +   N     T G L D + + +Q+ E     K +S + 
Sbjct: 350 YKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEG 409

Query: 153 CS-----YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           C      Y+ LI GC  + +L++A +VF  M++    P + T+ +LI  L  + R+D AL
Sbjct: 410 CEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLAL 469

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           K+   ++   +  P+  ++  +I GLC VG+   A  +   M       +   Y+++I  
Sbjct: 470 KVLSKMLE-NSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDG 528

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             K+GR  +   +L++M  +GC PN VTY  LI+  C     + A  +L+EM
Sbjct: 529 FGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEM 580



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 123/309 (39%), Gaps = 36/309 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + YD +I    +A   DE Q++   +  +    P    + ++I    + + L+ AL++
Sbjct: 413 NHVVYDALIDGCCKAGKLDEAQEVFTTML-ECGYDPNVYTYSSLIDRLFKDKRLDLALKV 471

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
             +M   +    V  +  +++     GK D   +L  +ME K  +P+  +Y  +I G   
Sbjct: 472 LSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGK 531

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY------- 217
           S R+E   ++  +M  +   P  VT+  LI   C    +DEA KL E++ + Y       
Sbjct: 532 SGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAG 591

Query: 218 -------------------------NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
                                    +  P   V+  LI      G L +AL + EE+   
Sbjct: 592 YRKVIEGFNREFIASLYLSFEISENDSVPVAPVYRVLIDNFIKAGRLEIALELNEELSSF 651

Query: 253 K--IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
                 +  I+ +LI  L  A + ++   +  +M  RG  P       LI G  +   +E
Sbjct: 652 SPFSAANQNIHITLIENLSLAHKADKAFELYADMISRGSIPELSILVHLIKGLLRVNRWE 711

Query: 311 AAFTILDEM 319
            A  +LD +
Sbjct: 712 EALQLLDSI 720



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 87/217 (40%), Gaps = 7/217 (3%)

Query: 133 KLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           K  + +E   ++EK    PD   Y  +I G   +   E+A      M      P ++T+ 
Sbjct: 22  KSGKWREALSLLEKEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYR 81

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
            L+ G CL        K    +M      P  ++F SL+   C  G+ + A  + ++MV+
Sbjct: 82  ILLCG-CLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQ 140

Query: 252 DKIEMDAGIYSSLISALFKAGRKNE-----FPAILKEMKERGCKPNSVTYNALISGFCKE 306
              +    +Y+ LI  +  +    +           EM E G   N V  +      C  
Sbjct: 141 CGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGI 200

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             FE A+ ++ EM  KG   +  +Y+ ++G LC   K
Sbjct: 201 GKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASK 237



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 63/165 (38%), Gaps = 42/165 (25%)

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGV--KEEMVRDKIEMDAGIYSSLISALFKA 271
           M     + D          LC  G+   AL +  KEE V D +     +Y+ +IS L +A
Sbjct: 1   MSTMGYRMDEFTLGCFAHSLCKSGKWREALSLLEKEEFVPDTV-----LYTKMISGLCEA 55

Query: 272 GRKNEFPAILKEMKERGCKPNSVTY----------------------------------- 296
               E    L  M+   C PN +TY                                   
Sbjct: 56  SLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIF 115

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           N+L+  +C+  D+  A+ +L +M   GC+   + YN+++GG+C  
Sbjct: 116 NSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSS 160


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 150/301 (49%), Gaps = 9/301 (2%)

Query: 46  NLLHYDLII---TKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           N++ Y  I+     LGR+   +E   +  Q+  +  ++P  + F  ++    +  ++  A
Sbjct: 151 NVVTYSSILHGFCNLGRS---NEATSLFKQMV-ERNVMPDTVTFNILVDGLSKEGMILEA 206

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG 161
             +F+ M    V+  V  +N L++   +  ++D  ++LF IM  K  +P   SYNILI G
Sbjct: 207 QCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKG 266

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              S R+++A  +  EM  + L P  VT+ TL+ G C + R  +A KL E+ MR Y + P
Sbjct: 267 HCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEE-MRSYGLLP 325

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   ++ ++ GLC  G L  A  + + M   KIE +  IY+ LI  +   G+      + 
Sbjct: 326 DLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELF 385

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             +  +G +P+ VTY  +ISG  K      A  +  +M   GC  N  +YNVI+ G  ++
Sbjct: 386 SNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRN 445

Query: 342 G 342
           G
Sbjct: 446 G 446



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 153/299 (51%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  II  L +        Q+L +++ +    P  +++  +I    + +L+  A++ 
Sbjct: 81  DVITYSTIINGLCKMGSTTMAIQLLKKME-EKGCKPNVVVYSTIIDSLCKDKLITEAMEF 139

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             EM +  +   V  ++++L+     G+ +    LF Q++E+ V PD  ++NIL+ G   
Sbjct: 140 LSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSK 199

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              + +A  VF+ M+++ ++P + T+  L+ G C + ++DEA KL  +IM      P  +
Sbjct: 200 EGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLF-NIMVRKGCAPSVR 258

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LIKG C  G +  A G+  EM    +  D   YS+L+    + GR  +   +L+EM
Sbjct: 259 SYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEM 318

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  G  P+ +TY+ ++ G CK+   + AF +L  M +   + N   Y +++ G+C  GK
Sbjct: 319 RSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGK 377



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 132/265 (49%), Gaps = 4/265 (1%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F  ++ G   +A++++ A+++FDEM     +  V  ++T++N     G      +
Sbjct: 45  PNHVTFSTLLNGLSSKAKIID-AVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQ 103

Query: 140 LFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L + M EK   P+   Y+ +I      + + +A +   EMV R + P +VT+ ++++G C
Sbjct: 104 LLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFC 163

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              R +EA  L + ++   NV PD   F  L+ GL   G +  A  V E M+   +E + 
Sbjct: 164 NLGRSNEATSLFKQMVE-RNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNV 222

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y++L+       + +E   +   M  +GC P+  +YN LI G CK    + A  +L E
Sbjct: 223 NTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAE 282

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M  K    + ++Y+ ++ G C+DG+
Sbjct: 283 MSHKALTPDTVTYSTLMKGFCQDGR 307



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 147/285 (51%), Gaps = 12/285 (4%)

Query: 60  AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK 119
            K+FDEM ++ ++        P  I +  +I    +      A+Q+  +M     +  V 
Sbjct: 67  VKLFDEMVKMGYE--------PDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVV 118

Query: 120 FFNTLLNPKLTCGKL--DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
            ++T+++  L   KL  + M+ L +++ + +SP+  +Y+ ++HG     R  +A  +F +
Sbjct: 119 VYSTIID-SLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQ 177

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           MV+R + P  VTF  L+ GL  E  + EA  + E ++    V+P+   + +L+ G C+  
Sbjct: 178 MVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIE-KGVEPNVNTYNALMDGYCSQS 236

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           ++  A  +   MVR         Y+ LI    K+GR +E   +L EM  +   P++VTY+
Sbjct: 237 QMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYS 296

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            L+ GFC++   + A  +L+EM   G   + ++Y+++L GLCK G
Sbjct: 297 TLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQG 341



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 123/244 (50%), Gaps = 4/244 (1%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIH 160
           A  +   M    +Q     F+TLLN   +  K+    +LF  M K    PD  +Y+ +I+
Sbjct: 31  AFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIIN 90

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDIMRVYNV 219
           G         A ++  +M ++  +P +V + T+I  LC +  + EA++ L E + R   +
Sbjct: 91  GLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNR--GI 148

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   ++S++ G C +G  + A  + ++MV   +  D   ++ L+  L K G   E   
Sbjct: 149 SPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQC 208

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + + M E+G +PN  TYNAL+ G+C +   + A  + + M  KGC  +  SYN+++ G C
Sbjct: 209 VFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHC 268

Query: 340 KDGK 343
           K G+
Sbjct: 269 KSGR 272


>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           pusilla]
          Length = 431

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 140/273 (51%), Gaps = 39/273 (14%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS--AMLASGVQPDXYTYSVL 218

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE------- 211
           I+G     +++DA ++FDEM+ + L P  VTF TLI G C + RVD A+++ +       
Sbjct: 219 INGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSL 278

Query: 212 ---------------------------DIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
                                      D M +  +KPD   + +LI G C  G+L  A  
Sbjct: 279 LPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTAFE 338

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
            ++ M+++ I +D   Y++LIS L + GR  +   +L+EM   G KP++ TY  +I+ FC
Sbjct: 339 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFC 398

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           K+ D      +L EM   G   + ++YNV++ G
Sbjct: 399 KKGDVWKGSRLLKEMQRNGHVPSVVTYNVLMNG 431



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 128/239 (53%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   SYN L++G + 
Sbjct: 130 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++ +++   M+   +QP   T+  LI GLC E ++D+A +L ++ M V  + P+G 
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFDE-MLVKGLVPNGV 248

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ + + M+   +  D   Y++LI  L K G   +   ++ EM
Sbjct: 249 TFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEM 308

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G KP+ +TY  LI G CKE D + AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 309 VMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGR 367



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G      ++   + + G +P+ V+YN L+
Sbjct: 125 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 185 NGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESK 227


>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Vitis vinifera]
          Length = 531

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 135/258 (52%), Gaps = 4/258 (1%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145
           +  +I   G+ R  + A Q+ D M + NV++ V+ F  L+   +  G        F  ME
Sbjct: 149 YMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRME 208

Query: 146 KY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
            Y   PD  +++++I      RR  +A   FD + K R +P +V + +L++G C    + 
Sbjct: 209 DYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSL-KDRFEPDVVVYTSLVHGWCRAGNIS 267

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           EA ++  + M++  ++P+   ++ +I  LC  G+++ A  V  EM+    + +A  +++L
Sbjct: 268 EAERVFGE-MKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNL 326

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           +    KAGR  +   +  +MK  GC P+++TYN LI   C++++ E A  IL+ +  KGC
Sbjct: 327 MRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSV-KKGC 385

Query: 325 KANPISYNVILGGLCKDG 342
             N  S+N I G + K G
Sbjct: 386 NLNASSFNPIFGCISKLG 403



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 138/340 (40%), Gaps = 36/340 (10%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           A  L+ F ++   Y  +I   G+ + FD   Q++  +K     +P E  F  ++  Y +A
Sbjct: 136 ATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVET-FTILVRRYVKA 194

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYN 156
            L   A+  F+ M  +  +     F+ +++      +    +  F  ++    PD   Y 
Sbjct: 195 GLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYT 254

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE---------------- 200
            L+HG   +  + +A +VF EM    +QP + T+  +I  LC                  
Sbjct: 255 SLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDV 314

Query: 201 ------------LRVDEALKLKEDIMRVYN------VKPDGQVFASLIKGLCAVGELSLA 242
                       +RV       E +++VYN        PD   +  LI+  C    L  A
Sbjct: 315 GCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEA 374

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
           + +    V+    ++A  ++ +   + K G  N    +  +MK+  C+PN+VTYN L+  
Sbjct: 375 VKILNS-VKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRM 433

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           F  ++  +    +  EM +   + N  +Y V++   C  G
Sbjct: 434 FADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIG 473



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 150/314 (47%), Gaps = 11/314 (3%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           N  E +  KP   + + + ++I+ L + +   E Q     LK   R  P  +++ +++  
Sbjct: 205 NRMEDYGCKP---DKIAFSVVISSLSKKRRAIEAQSFFDSLK--DRFEPDVVVYTSLVHG 259

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPD 151
           + RA  +  A ++F EM    +Q  V  ++ +++     G++ R  ++F ++++    P+
Sbjct: 260 WCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPN 319

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
           A ++N L+   V + R E   +V+++M +    P  +T+  LI   C +  ++EA+K+  
Sbjct: 320 AITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILN 379

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            + +  N+  +   F  +   +  +G+++ A  +  +M   K   +   Y+ L+      
Sbjct: 380 SVKKGCNL--NASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADK 437

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC--KANPI 329
              +    + KEM E   +PN+ TY  LIS FC    +  A++   EM ++ C   + P+
Sbjct: 438 KSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPV 497

Query: 330 SYNVILGGLCKDGK 343
            Y ++L  L K G+
Sbjct: 498 -YEMVLQQLRKAGQ 510



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 12/183 (6%)

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLI-----YGLCLELRVDEALKLKEDIMRVYNVK 220
           R+ + AW++ D M  R ++  + TF  L+      GL  E     A    ED    Y  K
Sbjct: 160 RQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAE--AVHAFNRMED----YGCK 213

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   F+ +I  L        A    + + +D+ E D  +Y+SL+    +AG  +E   +
Sbjct: 214 PDKIAFSVVISSLSKKRRAIEAQSFFDSL-KDRFEPDVVVYTSLVHGWCRAGNISEAERV 272

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             EMK  G +PN  TY+ +I   C+      A  +  EM D GC  N I++N ++    K
Sbjct: 273 FGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVK 332

Query: 341 DGK 343
            G+
Sbjct: 333 AGR 335



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 112/245 (45%), Gaps = 5/245 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y ++I  L R+        +  ++  D    P  I F N++  + +A   E+ LQ+
Sbjct: 284 NVYTYSIVIDALCRSGQITRAHDVFSEMI-DVGCDPNAITFNNLMRVHVKAGRTEKVLQV 342

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
           +++M           +N L+        L+   ++   ++K  + +A S+N  I GC+  
Sbjct: 343 YNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFN-PIFGCISK 401

Query: 166 -RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +  A ++F +M   + +P  VT+  L+     +   D  LKL+++ M    ++P+  
Sbjct: 402 LGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKE-MDENEIEPNAN 460

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDK-IEMDAGIYSSLISALFKAGRKNEFPAILKE 283
            +  LI   C +G  + A    +EM+ +K +     +Y  ++  L KAG+  +   ++++
Sbjct: 461 TYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEK 520

Query: 284 MKERG 288
           M  RG
Sbjct: 521 MVNRG 525


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 156/297 (52%), Gaps = 3/297 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           +K  + +++ Y  +I  L     +D+  ++L ++     I+P  + F  +I  + +   L
Sbjct: 302 MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG-RNIIPDVVTFSALIDVFVKEGKL 360

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
             A ++++EM +  +      +N+L++       L    ++F +M  K   PD  +Y+IL
Sbjct: 361 LEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSIL 420

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+    ++R++D  ++F E+  + L P  +T+ TL+ G C   +++ A +L ++ M    
Sbjct: 421 INSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQE-MVSRG 479

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V P    +  L+ GLC  GEL+ AL + E+M + ++ +  GIY+ +I  +  A + ++  
Sbjct: 480 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAW 539

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           ++   + ++G KP+ VTYN +I G CK+     A  +  +M + GC  +  +YN+++
Sbjct: 540 SLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 596



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 163/335 (48%), Gaps = 15/335 (4%)

Query: 11  LPRLQK--DPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQ 68
           L RL K  +  LAL LF+              +  + +++ Y ++I  L +   FD+   
Sbjct: 246 LNRLCKSGNSALALDLFRKMEE----------RNIKASVVQYSIVIDSLCKDGSFDDALS 295

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           + ++++    I    + + ++IG        +   +M  EM   N+   V  F+ L++  
Sbjct: 296 LFNEMEMKG-IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVF 354

Query: 129 LTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
           +  GKL   KEL+ +++ + ++PD  +YN LI G      L +A ++FD MV +  +P +
Sbjct: 355 VKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDI 414

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           VT+  LI   C   RVD+ ++L  +I     + P+   + +L+ G C  G+L+ A  + +
Sbjct: 415 VTYSILINSYCKAKRVDDGMRLFREI-SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQ 473

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           EMV   +      Y  L+  L   G  N+   I ++M++         YN +I G C   
Sbjct: 474 EMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNAS 533

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             + A+++   + DKG K + ++YNV++GGLCK G
Sbjct: 534 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKG 568



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 132/264 (50%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P E+ +  V+    ++     AL +F +M   N++ +V  ++ +++     G  D    L
Sbjct: 237 PDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSL 296

Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F  ME K +  D  +Y+ LI G     + +D  K+  EM+ R + P +VTF  LI     
Sbjct: 297 FNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 356

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E ++ EA +L  + M    + PD   + SLI G C    L  A  + + MV    E D  
Sbjct: 357 EGKLLEAKELYNE-MITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIV 415

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YS LI++  KA R ++   + +E+  +G  PN++TYN L+ GFC+     AA  +  EM
Sbjct: 416 TYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM 475

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             +G   + ++Y ++L GLC +G+
Sbjct: 476 VSRGVPPSVVTYGILLDGLCDNGE 499



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 129/262 (49%), Gaps = 4/262 (1%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  I F  ++ GF    R+ E A+ + D M     +  +   +TL+N     G++     
Sbjct: 167 PDTITFSTLVNGFCLEGRVSE-AVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALV 225

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L   M +Y   PD  +Y  +++    S     A  +F +M +R ++ ++V +  +I  LC
Sbjct: 226 LIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLC 285

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
            +   D+AL L  + M +  +K D   ++SLI GLC  G+      +  EM+   I  D 
Sbjct: 286 KDGSFDDALSLFNE-MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDV 344

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             +S+LI    K G+  E   +  EM  RG  P+++TYN+LI GFCKE     A  + D 
Sbjct: 345 VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDL 404

Query: 319 MGDKGCKANPISYNVILGGLCK 340
           M  KGC+ + ++Y++++   CK
Sbjct: 405 MVSKGCEPDIVTYSILINSYCK 426



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 108/196 (55%), Gaps = 1/196 (0%)

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           +  D  +  I+I+     ++L  A+ V     K   +P  +TF TL+ G CLE RV EA+
Sbjct: 130 IEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAV 189

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            L + ++ +   +PD    ++LI GLC  G +S AL + + MV    + D   Y  +++ 
Sbjct: 190 ALVDRMVEMKQ-RPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNR 248

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L K+G       + ++M+ER  K + V Y+ +I   CK+  F+ A ++ +EM  KG KA+
Sbjct: 249 LCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 308

Query: 328 PISYNVILGGLCKDGK 343
            ++Y+ ++GGLC DGK
Sbjct: 309 VVTYSSLIGGLCNDGK 324



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 107/194 (55%), Gaps = 1/194 (0%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PD  +++ L++G  +  R+ +A  + D MV+ + +P LVT  TLI GLCL+ RV EAL L
Sbjct: 167 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 226

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
             D M  Y  +PD   +  ++  LC  G  +LAL +  +M    I+     YS +I +L 
Sbjct: 227 I-DRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLC 285

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           K G  ++  ++  EM+ +G K + VTY++LI G C +  ++    +L EM  +    + +
Sbjct: 286 KDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVV 345

Query: 330 SYNVILGGLCKDGK 343
           +++ ++    K+GK
Sbjct: 346 TFSALIDVFVKEGK 359



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 129/258 (50%), Gaps = 2/258 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  I + ++I  + +   L  A QMFD M S   +  +  ++ L+N      ++D   
Sbjct: 375 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGM 434

Query: 139 ELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            LF +I  K + P+  +YN L+ G   S +L  A ++F EMV R + P++VT+G L+ GL
Sbjct: 435 RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGL 494

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C    +++AL++ E + +       G ++  +I G+C   ++  A  +   +    ++ D
Sbjct: 495 CDNGELNKALEIFEKMQKSRMTLGIG-IYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPD 553

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+ +I  L K G  +E   + ++MKE GC P+  TYN LI          ++  +++
Sbjct: 554 VVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIE 613

Query: 318 EMGDKGCKANPISYNVIL 335
           EM   G  A+  +  +++
Sbjct: 614 EMKVCGFSADSSTIKMVI 631


>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           macrophylla]
          Length = 431

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 142/273 (52%), Gaps = 39/273 (14%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS--AMLASGVQPDVYTYSVL 218

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL--------- 209
           I+G     +++DA ++FDEM+ + L P  V F TLI G C   RVD A+++         
Sbjct: 219 INGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSL 278

Query: 210 ----------------KEDIMRVYNV---------KPDGQVFASLIKGLCAVGELSLALG 244
                           K D+ +V+++         KPD   + +LI G C  G+L  A  
Sbjct: 279 LPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFE 338

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
            +++M+++ I +D   Y++LIS L + GR  +   +L+EM   G KP++ TY  +I+ FC
Sbjct: 339 HRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFC 398

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           K+ D      +L EM   G   + ++YNV++ G
Sbjct: 399 KKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 128/228 (56%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G +   + +F  + K+ + P   SYN L++G +    L++ +++ 
Sbjct: 141 SLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 200

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
             M+   +QP + T+  LI GLC E ++D+A +L ++ M V  + P+G +F +LI G C 
Sbjct: 201 SAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDE-MLVKGLVPNGVIFTTLIDGHCK 259

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 260 NGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKIT 319

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D + AF    +M  +  + + ++Y  ++ GLC++G+
Sbjct: 320 YTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGR 367



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 117/254 (46%), Gaps = 38/254 (14%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I  L +    D+  ++  ++     +VP  +IF                       
Sbjct: 215 YSVLINGLCKESKMDDANELFDEMLVKG-LVPNGVIF----------------------- 250

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
                        TL++     G++D   E++ Q++ + + PD  +YN LI+G      L
Sbjct: 251 ------------TTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDL 298

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           +    + DEM  + L+P  +T+ TLI G C E  +D A + ++ +++  N++ D   + +
Sbjct: 299 KQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQE-NIRLDEVAYTA 357

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI GLC  G    A  +  EM+   ++ DA  Y+ +I+   K G   +   +LKEM+  G
Sbjct: 358 LISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDG 417

Query: 289 CKPNSVTYNALISG 302
             P+ VTYN L++G
Sbjct: 418 HVPSVVTYNVLMNG 431



 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  +E++          ++ L+    K G      ++   + + G +P+ V+YN L+
Sbjct: 125 LVWGFYKEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 185 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 227


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 160/339 (47%), Gaps = 12/339 (3%)

Query: 7   RLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEM 66
           RL    R Q DP+ AL++      N        L P R     Y+ II KLG A  FD M
Sbjct: 58  RLVTALREQADPEAALRML-----NSALARDDGLTPSRD---VYEEIIRKLGTAGAFDLM 109

Query: 67  QQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMF-DEMSSFNVQMTVKFFNTLL 125
           + ++ +++ +   V   ++  + IG Y R +L + A  +  +++  F VQ   + +N LL
Sbjct: 110 KVLVGEMRREGHEVGLGLV-QSFIGSYARLQLFDDAFDLVSNQLDMFGVQANTEVYNHLL 168

Query: 126 NPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ 184
                  K+  ++  +  M  + + PD  ++N +I     +R+   A  + +EM    + 
Sbjct: 169 TVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVA 228

Query: 185 PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
           P   TF TL+ G   E  ++ AL+LK   M      P       LI G C +G +  ALG
Sbjct: 229 PDETTFTTLMEGFVEEGSIEAALRLKAR-MSEMGCSPTSVTVNVLINGYCKLGRVGDALG 287

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
             ++ + D  E D   +S+ ++ L + G  +    +L  M + GC+P+  TY+ +I+  C
Sbjct: 288 YIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLC 347

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              + E A  I+++M D GC  +  ++N ++  LC + +
Sbjct: 348 NNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQ 386



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 140/295 (47%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ ++T L        ++    ++     I P  + F  VI    RAR    A+ M +EM
Sbjct: 164 YNHLLTVLAEGSKIKLLESAYTEMSSQG-IEPDVVTFNTVIDALCRARQARTAVLMLEEM 222

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIHGCVVSRRL 168
           SS +V      F TL+   +  G ++    L  ++ E   SP + + N+LI+G     R+
Sbjct: 223 SSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRV 282

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            DA     + +    +P  VTF T + GLC    VD ALK+   +M     +PD   +++
Sbjct: 283 GDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVL-GLMLQEGCEPDVYTYST 341

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I  LC  GEL  A G+  +MV      D   +++LI AL    +  E   + +E+  +G
Sbjct: 342 VINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKG 401

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             PN  T+N LI+  CK  D   A  + +EM   GC  + ++YN+++  LC  GK
Sbjct: 402 LSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGK 456



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 125/242 (51%), Gaps = 2/242 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC-SYNILIH 160
           A+++F+EM S         +N L++   + GKL +  +L + ME    P +  +YN +I 
Sbjct: 425 AVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIID 484

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G    RR+E+A +VFD+M    +    +TF TLI GLC   R+D+A +L  D M    ++
Sbjct: 485 GLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELV-DQMISEGLQ 543

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   + S++   C  G +S A  + + M  +  E+D   Y++LI+ L KA R      +
Sbjct: 544 PNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKL 603

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L+ M+ +G KP    YN +I    +  +   A ++  EM + G   +  +Y ++  GLC+
Sbjct: 604 LRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCR 663

Query: 341 DG 342
            G
Sbjct: 664 GG 665



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 2/221 (0%)

Query: 121 FNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           F+T +N     G +D  +K L  ++++   PD  +Y+ +I+    +  LE+A  + ++MV
Sbjct: 304 FSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMV 363

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
                P   TF TLI  LC E +++EAL L  ++  V  + P+   F  LI  LC VG+ 
Sbjct: 364 DSGCLPDTTTFNTLIVALCTENQLEEALDLARELT-VKGLSPNVYTFNILINALCKVGDP 422

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
            LA+ + EEM       D   Y+ LI  L  +G+  +   +LKEM+  GC  ++VTYN +
Sbjct: 423 HLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTI 482

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           I G CK    E A  + D+M   G   N I++N ++ GLC 
Sbjct: 483 IDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCN 523



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 125/264 (47%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F   +    +   ++ AL++   M     +  V  ++T++N     G+L+  K +
Sbjct: 299 PDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGI 358

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
             Q+++    PD  ++N LI       +LE+A  +  E+  + L P + TF  LI  LC 
Sbjct: 359 VNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCK 418

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
                 A++L E+ M+     PD   +  LI  LC+ G+L+ AL + +EM          
Sbjct: 419 VGDPHLAVRLFEE-MKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTV 477

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+++I  L K  R  E   +  +M   G   N++T+N LI G C  E  + A  ++D+M
Sbjct: 478 TYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQM 537

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             +G + N ++YN IL   CK G 
Sbjct: 538 ISEGLQPNNVTYNSILTHYCKQGN 561


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 153/299 (51%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ Y +++  L +    D    +L++++   +I    +I+  VI    + R  + AL +
Sbjct: 224 NLVTYGVVVNGLCKRGDIDLAFNLLNKMEA-AKIEANVVIYSTVIDSLCKYRHEDDALNL 282

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           F EM +  V+  V  +++L++      +  D  + L  ++E+ ++P+  ++N LI   V 
Sbjct: 283 FTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVK 342

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L +A K++DEM+KR + P + T+ +LI G C+  R+DEA  + E +M   +  P+  
Sbjct: 343 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE-LMISKDCFPNVV 401

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G C    +   + +  EM +  +  +   Y++LI   F+A   +    + K+M
Sbjct: 402 TYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 461

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  PN +TYN L+ G CK    E A  + + +     +    +YN+++ G+CK GK
Sbjct: 462 VSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 520



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 143/286 (50%), Gaps = 13/286 (4%)

Query: 70  LHQLKHD-----------TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV 118
           LH +K D           +R +P    F  ++    + +  +  + + ++M    +   +
Sbjct: 61  LHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNL 120

Query: 119 KFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
             +N L+N      ++   +  L ++M+    P   + + L++G    +R+ DA  + D+
Sbjct: 121 YTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 180

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           MV+   +P  +TF TLI+GL L  +  EA+ L  D M     +P+   +  ++ GLC  G
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALV-DRMVQRGCQPNLVTYGVVVNGLCKRG 239

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           ++ LA  +  +M   KIE +  IYS++I +L K   +++   +  EM+ +G +PN +TY+
Sbjct: 240 DIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYS 299

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +LIS  C  E +  A  +L +M ++    N +++N ++    K+GK
Sbjct: 300 SLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGK 345



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 147/284 (51%), Gaps = 3/284 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  R N++ Y  +I+ L   + + +  ++L  +  + +I P  + F  +I  + +   L 
Sbjct: 289 KGVRPNVITYSSLISCLCNYERWSDASRLLSDMI-ERKINPNVVTFNALIDAFVKEGKLV 347

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            A +++DEM   ++   +  +++L+N      +LD  K +F++M  K   P+  +YN LI
Sbjct: 348 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 407

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +G   ++R+++  ++F EM +R L    VT+ TLI+G       D A  + +  M    V
Sbjct: 408 NGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQ-MVSDGV 466

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   + +L+ GLC  G+L  A+ V E + R K+E     Y+ +I  + KAG+  +   
Sbjct: 467 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 526

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +   +  +G KP+ + YN +ISGFC++   E A  +  +M + G
Sbjct: 527 LFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDG 570



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 124/266 (46%), Gaps = 4/266 (1%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  I F  +I G +   +  E A+ + D M     Q  +  +  ++N     G +D    
Sbjct: 188 PDTITFTTLIHGLFLHNKASE-AVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFN 246

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L   ME   +  +   Y+ +I      R  +DA  +F EM  + ++P ++T+ +LI  LC
Sbjct: 247 LLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLC 306

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              R  +A +L  D++    + P+   F +LI      G+L  A  + +EM++  I+ D 
Sbjct: 307 NYERWSDASRLLSDMIE-RKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 365

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             YSSLI+      R +E   + + M  + C PN VTYN LI+GFCK +  +    +  E
Sbjct: 366 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFRE 425

Query: 319 MGDKGCKANPISYNVILGGLCKDGKC 344
           M  +G   N ++Y  ++ G  +   C
Sbjct: 426 MSQRGLVGNTVTYTTLIHGFFQARDC 451



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 124/270 (45%), Gaps = 20/270 (7%)

Query: 72  QLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131
           Q K + RI P  I  C +  ++GRA         F   S          +  +L   L  
Sbjct: 22  QGKGNPRIAPSSIDLCGMC-YWGRA---------FSSGSGD--------YREILRNGLHS 63

Query: 132 GKLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
            KLD    LF  M K    P    +N L+      ++ +    + ++M +  +   L T+
Sbjct: 64  MKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTY 123

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
             LI   C   ++  AL L   +M++   +P     +SL+ G C    +S A+ + ++MV
Sbjct: 124 NILINCFCRRSQISLALALLGKMMKL-GYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 182

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
                 D   +++LI  LF   + +E  A++  M +RGC+PN VTY  +++G CK  D +
Sbjct: 183 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDID 242

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCK 340
            AF +L++M     +AN + Y+ ++  LCK
Sbjct: 243 LAFNLLNKMEAAKIEANVVIYSTVIDSLCK 272



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 121/236 (51%), Gaps = 10/236 (4%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           K++DEM +          I P    + ++I  +     L+ A  MF+ M S +    V  
Sbjct: 351 KLYDEMIK--------RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 402

Query: 121 FNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +NTL+N      ++D   ELF+ M ++ +  +  +Y  LIHG   +R  ++A  VF +MV
Sbjct: 403 YNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV 462

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
              + P ++T+ TL+ GLC   ++++A+ + E + R   ++P    +  +I+G+C  G++
Sbjct: 463 SDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS-KMEPTIYTYNIMIEGMCKAGKV 521

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
                +   +    ++ D  IY+++IS   + G K E  A+ ++M+E G  P+S T
Sbjct: 522 EDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 151/304 (49%), Gaps = 3/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  NL+  + +I  L +     E  ++L ++     ++ K I +  +I    +   +E
Sbjct: 485 KGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDK-ITYNTLISGCCKEGKVE 543

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
              ++  EM    ++     +N L++     GKLD    L+ +   + + P+  +Y ++I
Sbjct: 544 EGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMI 603

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G   + ++E+  K+F E++ + L+   V + TLI   C      EA KL +D MR   +
Sbjct: 604 DGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDD-MRSKGI 662

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P    ++SLI G+C +G +  A  + +EM ++ +  +   Y++LI    K G+ ++   
Sbjct: 663 PPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVN 722

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +L+EM      PN +TY  +I G+ K  D + A  +L EM  KG   + ++YNV+  G C
Sbjct: 723 VLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFC 782

Query: 340 KDGK 343
           K+GK
Sbjct: 783 KEGK 786



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 131/251 (52%), Gaps = 5/251 (1%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDAC 153
           +A  LE++  +F+ M    V   V  F+T +N     GK++   +LF  MEK  VSP+  
Sbjct: 224 KANELEKSYWVFETMRQ-GVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVV 282

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKED 212
           +YN LIHG      L++A++  ++MVK  +  TL+T+  LI GL    + +EA   LKE 
Sbjct: 283 TYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKET 342

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           + + +   P+  V+ +LI G C +G L  AL ++ +MV   I  ++   +S+I    K G
Sbjct: 343 LEKGFT--PNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIG 400

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           +  +   IL+EM  RG   N   +  +I   C    FE+A   L EM  +  + N     
Sbjct: 401 QMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLT 460

Query: 333 VILGGLCKDGK 343
            ++GGLCK+GK
Sbjct: 461 TLVGGLCKEGK 471



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 127/242 (52%), Gaps = 1/242 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161
           A+ +F  +++  V  TVK    LL+  +   +L++   +F+ M + VSPD   ++  I+ 
Sbjct: 196 AIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYLFSTAINA 255

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                ++EDA ++F +M K  + P +VT+  LI+GLC    +DEA + KE +++   V  
Sbjct: 256 FCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVK-DGVNA 314

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
               ++ LI GL  + + + A  V +E +      +  +Y++LI    K G   +   I 
Sbjct: 315 TLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIR 374

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            +M  +G  PNSVT N++I GFCK    E A  IL+EM  +G   NP ++  I+  LC +
Sbjct: 375 GDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMN 434

Query: 342 GK 343
            +
Sbjct: 435 SR 436



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 130/248 (52%), Gaps = 4/248 (1%)

Query: 93  YGRARL--LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVS 149
           +G  R+  L+ A+ +++E  S ++   V  +  +++      K++  ++LF +++ + + 
Sbjct: 569 HGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLE 628

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
            ++  YN LI     +    +A+K+ D+M  + + PT  T+ +LI+G+C   R+++A K 
Sbjct: 629 LNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDA-KC 687

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
             D MR   + P+   + +LI G C +G++   + V +EM    I  +   Y+ +I    
Sbjct: 688 LIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYS 747

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           K+G       +L EM  +G  P++VTYN L +GFCKE   E  F I D M  +G   + I
Sbjct: 748 KSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEI 807

Query: 330 SYNVILGG 337
           +Y  ++ G
Sbjct: 808 TYTTLVHG 815



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 147/331 (44%), Gaps = 45/331 (13%)

Query: 52  LIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111
            +++ L +A   ++   +   ++    + P   +F   I  + +   +E A+Q+F +M  
Sbjct: 217 FLLSSLVKANELEKSYWVFETMRQG--VSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEK 274

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV----SPDACSYNILIHGCVVSRR 167
             V   V  +N L++     G LD   E F+  EK V    +    +Y++LI+G +   +
Sbjct: 275 LGVSPNVVTYNNLIHGLCKHGNLD---EAFRFKEKMVKDGVNATLITYSVLINGLMKLEK 331

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
             +A  V  E +++   P  V + TLI G C    + +AL+++ D M    + P+     
Sbjct: 332 FNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGD-MVSKGINPNSVTLN 390

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           S+I+G C +G++  A  + EEM+     ++ G ++++I  L    R       L+EM  R
Sbjct: 391 SIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLR 450

Query: 288 GCKPNS-----------------------------------VTYNALISGFCKEEDFEAA 312
             +PN                                    VT NALI G CK  + + A
Sbjct: 451 NMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEA 510

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +L +M ++G   + I+YN ++ G CK+GK
Sbjct: 511 VRLLKKMLERGFVLDKITYNTLISGCCKEGK 541



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 126/259 (48%), Gaps = 2/259 (0%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIM 144
           F  +I +       E AL+   EM   N++       TL+      GK     EL F+++
Sbjct: 424 FTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLL 483

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
           EK    +  + N LIHG   +  +++A ++  +M++R      +T+ TLI G C E +V+
Sbjct: 484 EKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVE 543

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           E  KL+ ++++   ++PD   +  LI G+C +G+L  A+ +  E     +  +   Y  +
Sbjct: 544 EGFKLRGEMVK-QGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVM 602

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           I    KA +  E   +  E+  +  + NSV YN LI  +C+  +   AF + D+M  KG 
Sbjct: 603 IDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGI 662

Query: 325 KANPISYNVILGGLCKDGK 343
                +Y+ ++ G+C  G+
Sbjct: 663 PPTTATYSSLIHGMCNIGR 681



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 120/255 (47%), Gaps = 3/255 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+L+I  + R    DE   + ++ K    +VP    +  +I  Y +A  +E   ++F E+
Sbjct: 564 YNLLIHGMCRIGKLDEAVNLWNECK-SRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTEL 622

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
            + N+++    +NTL+      G      +L   M  K + P   +Y+ LIHG     R+
Sbjct: 623 LTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRM 682

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           EDA  + DEM K  L P +V +  LI G C   ++D+ + + ++ M  Y++ P+   +  
Sbjct: 683 EDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQE-MSSYDIHPNKITYTV 741

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I G    G++  A  +  EMV   I  D   Y+ L +   K G+  E   I   M + G
Sbjct: 742 MIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEG 801

Query: 289 CKPNSVTYNALISGF 303
              + +TY  L+ G+
Sbjct: 802 LPLDEITYTTLVHGW 816


>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
          Length = 845

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 159/339 (46%), Gaps = 44/339 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +L  Y LII  L ++K  D+ +++L Q+ +  TR  P  I + ++I  Y  + +   +++
Sbjct: 279 DLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTR--PNSITYNSLIHGYSISGMWNESVR 336

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-------------------- 144
           +F +MSS  V  TV   N+ ++     G+ +  K +F  M                    
Sbjct: 337 VFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTNASWVC 396

Query: 145 -------------------EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
                               K ++P+   +NILI+       ++ A  +F++M  + + P
Sbjct: 397 YWYVTVVWVMWHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIP 456

Query: 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
             VTF T+I  LC   R+D+AL  K + M    V P   V+  LI+G C  GEL  A  +
Sbjct: 457 DTVTFATVISSLCRIGRLDDALH-KFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKEL 515

Query: 246 KEEMVRDKIEMDAGIY-SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
             EM+   I      Y SS+I+ L K GR  E   I+  M + G +PN VT+N+L+ G+C
Sbjct: 516 ISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYC 575

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              + E AF +LD M   G + N   Y  ++ G CK+G+
Sbjct: 576 LVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGR 614



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 132/265 (49%), Gaps = 3/265 (1%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P + +F  +I  Y R  ++++A+ +F++M +  +      F T+++     G+LD   
Sbjct: 419 IAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDAL 478

Query: 139 ELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT-FGTLIYG 196
             F  +++  V P    Y  LI GC     L  A ++  EM+ + + P  V  F ++I  
Sbjct: 479 HKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINN 538

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC E RV E   +  D+M     +P+   F SL++G C VG +  A  + + M    IE 
Sbjct: 539 LCKEGRVAEGKDIM-DMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEP 597

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +  IY +L+    K GR ++   + ++M  +G KP SV Y+ ++ G  +     AA  + 
Sbjct: 598 NCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMF 657

Query: 317 DEMGDKGCKANPISYNVILGGLCKD 341
            EM + G   +  +Y V+LGGLC++
Sbjct: 658 HEMIESGTTVSIHTYGVVLGGLCRN 682



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 143/296 (48%), Gaps = 4/296 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++++I    R  M D+   I   ++ +  ++P  + F  VI    R   L+ AL  F+ M
Sbjct: 426 FNILINAYARCGMMDKAMLIFEDMQ-NKGMIPDTVTFATVISSLCRIGRLDDALHKFNHM 484

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSY-NILIHGCVVSRR 167
               V  +   +  L+      G+L + KEL  ++M K + P    Y + +I+      R
Sbjct: 485 VDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGR 544

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           + +   + D MV+   +P +VTF +L+ G CL   ++EA  L  D M    ++P+  ++ 
Sbjct: 545 VAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALL-DAMASIGIEPNCYIYG 603

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +L+ G C  G +  AL V  +M+   ++  + +YS ++  LF+A R      +  EM E 
Sbjct: 604 TLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIES 663

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G   +  TY  ++ G C+    + A  +L+++     K + I++N+++  + K G+
Sbjct: 664 GTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGR 719



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 112/236 (47%), Gaps = 1/236 (0%)

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGC 162
            +F+ M +  +      FN L+N    CG +D+   +F+ M+ K + PD  ++  +I   
Sbjct: 409 NIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 468

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
               RL+DA   F+ MV   + P+   +G LI G C    + +A +L  ++M      P 
Sbjct: 469 CRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPG 528

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
            + F+S+I  LC  G ++    + + MV+     +   ++SL+      G   E  A+L 
Sbjct: 529 VKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLD 588

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            M   G +PN   Y  L+ G+CK    + A T+  +M  KG K   + Y++IL GL
Sbjct: 589 AMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGL 644



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 136/303 (44%), Gaps = 45/303 (14%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKH--DTRIVPKEIIF-CNVIGFYGRARLLERALQMF 106
           +  +I+ L R    D+    LH+  H  D  + P E ++ C + G      L+ +A ++ 
Sbjct: 461 FATVISSLCRIGRLDDA---LHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELV-KAKELI 516

Query: 107 DEMSSFNVQM-TVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            EM + ++    VK+F++++N     G++   K++  +M +    P+  ++N L+ G  +
Sbjct: 517 SEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCL 576

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +E+A+ + D M    ++P    +GTL+ G C   R+D+AL +  D++    VKP   
Sbjct: 577 VGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLH-KGVKPTSV 635

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRD-------------------------------- 252
           +++ ++ GL      + A  +  EM+                                  
Sbjct: 636 LYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKL 695

Query: 253 ---KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
               ++ D   ++ +ISA+FK GR+ E   +   +   G  PN  TY+ +I+   KEE +
Sbjct: 696 FAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESY 755

Query: 310 EAA 312
           E A
Sbjct: 756 EEA 758



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 105/223 (47%), Gaps = 8/223 (3%)

Query: 127 PKLTCGKLDRMK-ELFQIMEKYVSPDAC-----SYNILIHGCVVSRRLEDAWKVFDEMVK 180
           P   CG    +  ELF+ M+++  P        +YNILI       R +    +   ++K
Sbjct: 145 PSAACGDAPALAIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLK 204

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
             L P   ++ +LIYG   +  VD+A  L  ++M    V P   +  S+IK LC + E+ 
Sbjct: 205 NGLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMME-QGVLPKILICNSIIKELCKMKEMD 262

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  + ++MV   I  D   YS +I  L K+   ++   +L++M E G +PNS+TYN+LI
Sbjct: 263 KAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLI 322

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            G+     +  +  +  +M   G      + N  +  L K G+
Sbjct: 323 HGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGR 365



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 149/330 (45%), Gaps = 13/330 (3%)

Query: 18  PKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 77
           P LA++LFK  +       + P       +  Y+++I    R    D    I+ +L  + 
Sbjct: 153 PALAIELFKRMDRWACPRHSPP------TIHTYNILIDCYRRVHRPDLGLAIVGRLLKNG 206

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
            + P +  +  + GF     + ++A  +F EM    V   +   N+++       ++D+ 
Sbjct: 207 -LGPDDFSYSLIYGFVKDGEV-DKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKA 264

Query: 138 KELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           + + Q M +  ++PD  +Y+++I G   S+ ++ A +V ++MV+   +P  +T+ +LI+G
Sbjct: 265 ESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHG 324

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
             +    +E++++ +  M    V P      S I  L   G  + A  + + MV    + 
Sbjct: 325 YSISGMWNESVRVFKQ-MSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKP 383

Query: 257 DAGIYS---SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           D   YS   S +   +       +  I   M  +G  PN   +N LI+ + +    + A 
Sbjct: 384 DIISYSTNASWVCYWYVTVVWVMWHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAM 443

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            I ++M +KG   + +++  ++  LC+ G+
Sbjct: 444 LIFEDMQNKGMIPDTVTFATVISSLCRIGR 473


>gi|297830004|ref|XP_002882884.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297328724|gb|EFH59143.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 409

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 139/276 (50%), Gaps = 3/276 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR-ARLLERALQMFDE 108
           Y L+I K G+AKMFDE+++++  +K + R    E  F N++  YG  A  + RA+++   
Sbjct: 98  YALLINKFGQAKMFDEIEEVMSTIKLEKRCRFSEDFFYNLMRIYGNLAGRINRAIEILFG 157

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRR 167
           M  F    + K FN +LN  ++    D + ++F    K  V  DAC  NILI G   S  
Sbjct: 158 MPDFGCWPSAKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACCLNILIKGLCESGN 217

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           LE A ++ DE  K++ +P ++TF  LI G C + + +EA KL E  M    ++PD   F 
Sbjct: 218 LEAALQLLDEFPKQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLER-MEKERIEPDTITFN 276

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            LI GL   G +   + + E M     E + G Y  ++  L    R  E   ++ +M   
Sbjct: 277 ILISGLRKKGRVEEGIDLLERMKLKGCEPNPGTYQEVLYGLLDKKRNLEAKEMMSQMISW 336

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           G +P+ ++Y  ++ G C+ +       +L +M + G
Sbjct: 337 GMRPSFLSYKKMVLGLCETKSVAEMDWVLRKMVNHG 372



 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
            A  ++ +++ L  A   +E   I     + G + ++   N LI G C+  + EAA  +L
Sbjct: 166 SAKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACCLNILIKGLCESGNLEAALQLL 225

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
           DE   +  + N ++++ ++ G C  GK
Sbjct: 226 DEFPKQKSRPNVMTFSPLIRGFCNKGK 252


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 156/297 (52%), Gaps = 3/297 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           +K  + +++ Y  +I  L     +D+  ++L ++     I+P  + F  +I  + +   L
Sbjct: 273 MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG-RNIIPDVVTFSALIDVFVKEGKL 331

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
             A ++++EM +  +      +N+L++       L    ++F +M  K   PD  +Y+IL
Sbjct: 332 LEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSIL 391

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+    ++R++D  ++F E+  + L P  +T+ TL+ G C   +++ A +L ++ M    
Sbjct: 392 INSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQE-MVSRG 450

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V P    +  L+ GLC  GEL+ AL + E+M + ++ +  GIY+ +I  +  A + ++  
Sbjct: 451 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAW 510

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           ++   + ++G KP+ VTYN +I G CK+     A  +  +M + GC  +  +YN+++
Sbjct: 511 SLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 163/336 (48%), Gaps = 15/336 (4%)

Query: 11  LPRLQK--DPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQ 68
           L RL K  +  LAL LF+              +  + +++ Y ++I  L +   FD+   
Sbjct: 217 LNRLCKSGNSALALDLFRKMEE----------RNIKASVVQYSIVIDSLCKDGSFDDALS 266

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           + ++++    I    + + ++IG        +   +M  EM   N+   V  F+ L++  
Sbjct: 267 LFNEMEMKG-IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVF 325

Query: 129 LTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
           +  GKL   KEL+ +++ + ++PD  +YN LI G      L +A ++FD MV +  +P +
Sbjct: 326 VKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDI 385

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           VT+  LI   C   RVD+ ++L  +I     + P+   + +L+ G C  G+L+ A  + +
Sbjct: 386 VTYSILINSYCKAKRVDDGMRLFREI-SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQ 444

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           EMV   +      Y  L+  L   G  N+   I ++M++         YN +I G C   
Sbjct: 445 EMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNAS 504

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             + A+++   + DKG K + ++YNV++GGLCK G 
Sbjct: 505 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGS 540



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 132/264 (50%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P E+ +  V+    ++     AL +F +M   N++ +V  ++ +++     G  D    L
Sbjct: 208 PDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSL 267

Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F  ME K +  D  +Y+ LI G     + +D  K+  EM+ R + P +VTF  LI     
Sbjct: 268 FNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 327

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E ++ EA +L  + M    + PD   + SLI G C    L  A  + + MV    E D  
Sbjct: 328 EGKLLEAKELYNE-MITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIV 386

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YS LI++  KA R ++   + +E+  +G  PN++TYN L+ GFC+     AA  +  EM
Sbjct: 387 TYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM 446

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             +G   + ++Y ++L GLC +G+
Sbjct: 447 VSRGVPPSVVTYGILLDGLCDNGE 470



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 129/262 (49%), Gaps = 4/262 (1%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  I F  ++ GF    R+ E A+ + D M     +  +   +TL+N     G++     
Sbjct: 138 PDTITFSTLVNGFCLEGRVSE-AVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALV 196

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L   M +Y   PD  +Y  +++    S     A  +F +M +R ++ ++V +  +I  LC
Sbjct: 197 LIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLC 256

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
            +   D+AL L  + M +  +K D   ++SLI GLC  G+      +  EM+   I  D 
Sbjct: 257 KDGSFDDALSLFNE-MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDV 315

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             +S+LI    K G+  E   +  EM  RG  P+++TYN+LI GFCKE     A  + D 
Sbjct: 316 VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDL 375

Query: 319 MGDKGCKANPISYNVILGGLCK 340
           M  KGC+ + ++Y++++   CK
Sbjct: 376 MVSKGCEPDIVTYSILINSYCK 397



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 108/196 (55%), Gaps = 1/196 (0%)

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           +  D  +  I+I+     ++L  A+ V     K   +P  +TF TL+ G CLE RV EA+
Sbjct: 101 IEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAV 160

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            L + ++ +   +PD    ++LI GLC  G +S AL + + MV    + D   Y  +++ 
Sbjct: 161 ALVDRMVEMKQ-RPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNR 219

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L K+G       + ++M+ER  K + V Y+ +I   CK+  F+ A ++ +EM  KG KA+
Sbjct: 220 LCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 279

Query: 328 PISYNVILGGLCKDGK 343
            ++Y+ ++GGLC DGK
Sbjct: 280 VVTYSSLIGGLCNDGK 295



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 107/194 (55%), Gaps = 1/194 (0%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PD  +++ L++G  +  R+ +A  + D MV+ + +P LVT  TLI GLCL+ RV EAL L
Sbjct: 138 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 197

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
             D M  Y  +PD   +  ++  LC  G  +LAL +  +M    I+     YS +I +L 
Sbjct: 198 I-DRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLC 256

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           K G  ++  ++  EM+ +G K + VTY++LI G C +  ++    +L EM  +    + +
Sbjct: 257 KDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVV 316

Query: 330 SYNVILGGLCKDGK 343
           +++ ++    K+GK
Sbjct: 317 TFSALIDVFVKEGK 330



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 129/258 (50%), Gaps = 2/258 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  I + ++I  + +   L  A QMFD M S   +  +  ++ L+N      ++D   
Sbjct: 346 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGM 405

Query: 139 ELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            LF +I  K + P+  +YN L+ G   S +L  A ++F EMV R + P++VT+G L+ GL
Sbjct: 406 RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGL 465

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C    +++AL++ E + +       G ++  +I G+C   ++  A  +   +    ++ D
Sbjct: 466 CDNGELNKALEIFEKMQKSRMTLGIG-IYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPD 524

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+ +I  L K G  +E   + ++MKE GC P+  TYN LI          ++  +++
Sbjct: 525 VVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIE 584

Query: 318 EMGDKGCKANPISYNVIL 335
           EM   G  A+  +  +++
Sbjct: 585 EMKVCGFSADSSTIKMVI 602


>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
           succulentifolia]
          Length = 429

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 137/258 (53%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y +   L    ++   M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 173 PSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNEL 232

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++  + P+  ++  LI G   + R++ A +++ +M+ + L P LVT+ TLIYGLC 
Sbjct: 233 FDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCK 292

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   +  M+++ I +D  
Sbjct: 293 KGDLKQAQDLIDE-MSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDV 351

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP   TY  +I+ FCK+ D      ++ EM
Sbjct: 352 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEM 411

Query: 320 GDKGCKANPISYNVILGG 337
              G   + ++YNV++ G
Sbjct: 412 QRDGYVPSVVTYNVLMNG 429



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 124/228 (54%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G++   + +F  + K+ + P   S+N L++G +    L + +++ 
Sbjct: 139 SLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLK 198

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
             M    +QP + T+  LI GLC E ++D+  +L ++++    + P+G  F +LI G C 
Sbjct: 199 KAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDX-GLVPNGVTFTTLIDGHCK 257

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 258 NGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKIT 317

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 318 YTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGR 365



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/267 (31%), Positives = 134/267 (50%), Gaps = 9/267 (3%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ + ++ +V  FNTL+N  +  G L+ 
Sbjct: 137 PASLYFFNILMHSFCKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNE 193

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L + M+   V PD  +Y++LI+G     +++D  ++FDEM+   L P  VTF TLI 
Sbjct: 194 XFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLID 253

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   RVD A+++ + ++   ++ PD   + +LI GLC  G+L  A  + +EM    ++
Sbjct: 254 GHCKNGRVDLAMEIYKQMLS-QSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 312

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI    K G           M +   + + V Y ALISG C+E     A  +
Sbjct: 313 PDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 372

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
           L EM   G K    +Y +I+   CK G
Sbjct: 373 LREMLSVGLKPEIGTYTMIINEFCKKG 399



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 49/103 (47%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE +          ++ L+ +  K G      ++   + + G +P+ V++N L+
Sbjct: 123 LVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM 182

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ K  D    F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 183 NGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESK 225


>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 418

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 132/244 (54%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  +I  Y R   L++  ++   M +  V   V     L+N      K+D   EL
Sbjct: 169 PSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANEL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++K + P+  ++  LI G   S R++ A +++ +M+++   P L+T+ TLIYGLC 
Sbjct: 229 FNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCR 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L  + M +  +KPD   + +LI G C  G+L  A  +++ M+ + I +D  
Sbjct: 289 KGDLKQARDLIVE-MSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP + TY  +I+GFCK+ D + A  +L EM
Sbjct: 348 AYTALISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEM 407

Query: 320 GDKG 323
              G
Sbjct: 408 QRDG 411



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 123/228 (53%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G++   + +F  + K  + P   S+N LI+G +    L+  +++ 
Sbjct: 135 SLYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
             M    + P + T   LI GLC E ++DEA +L  +++    + P+G  F +LI G C 
Sbjct: 195 TAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLD-KGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LAL + ++M+R     D   Y++LI  L + G   +   ++ EM  +G KP+ +T
Sbjct: 254 SGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF +   M ++  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGR 361



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/267 (32%), Positives = 133/267 (49%), Gaps = 9/267 (3%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++   ++ +V  FNTL+N  +  G LD+
Sbjct: 133 PTSLYFFNILMHRFCKEGEIRL---AQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDK 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M    V PD  +  +LI+G     ++++A ++F+EM+ + L P  VTF TLI 
Sbjct: 190 GFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   RVD AL++ + ++R     PD   + +LI GLC  G+L  A  +  EM    ++
Sbjct: 250 GHCKSGRVDLALEIYKQMLR-QGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLK 308

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI    K G       + K M E   + + V Y ALISG C+E     A  +
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKM 368

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
           L EM   G K    +Y +I+ G CK G
Sbjct: 369 LREMLSVGLKPENGTYTMIINGFCKQG 395



 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 47/103 (45%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  +E++          ++ L+    K G      ++   + + G +P+ V++N LI
Sbjct: 119 LVWGFYKEILECGYPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLI 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G   +  +  V++ GLCK+ K
Sbjct: 179 NGYIRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESK 221


>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g20300, mitochondrial; Flags: Precursor
 gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
           from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
           contains multiple PPR PF|01535 repeats [Arabidopsis
           thaliana]
 gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 537

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 131/251 (52%), Gaps = 3/251 (1%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145
           +  +I   G+ R  + A  + D M S NV+++++ F  L+   +  G        F  ME
Sbjct: 154 YNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213

Query: 146 KY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
            Y   PD  +++I+I      RR  +A   FD + K R +P ++ +  L+ G C    + 
Sbjct: 214 DYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSL-KDRFEPDVIVYTNLVRGWCRAGEIS 272

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           EA K+ ++ M++  ++P+   ++ +I  LC  G++S A  V  +M+      +A  +++L
Sbjct: 273 EAEKVFKE-MKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNL 331

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           +    KAGR  +   +  +MK+ GC+P+++TYN LI   C++E+ E A  +L+ M  K C
Sbjct: 332 MRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKC 391

Query: 325 KANPISYNVIL 335
           + N  ++N I 
Sbjct: 392 EVNASTFNTIF 402



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 146/296 (49%), Gaps = 5/296 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           + ++I+ L R +   E Q     LK   R  P  I++ N++  + RA  +  A ++F EM
Sbjct: 224 FSIVISNLSRKRRASEAQSFFDSLK--DRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEM 281

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
               ++  V  ++ +++    CG++ R  ++F  +++   +P+A ++N L+   V + R 
Sbjct: 282 KLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRT 341

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E   +V+++M K   +P  +T+  LI   C +  ++ A+K+   +++    + +   F +
Sbjct: 342 EKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIK-KKCEVNASTFNT 400

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           + + +    +++ A  +  +M+  K E +   Y+ L+     +   +    + KEM ++ 
Sbjct: 401 IFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKE 460

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS-YNVILGGLCKDGK 343
            +PN  TY  L++ FC    +  A+ +  EM ++ C    +S Y ++L  L + G+
Sbjct: 461 VEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQ 516



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 16/300 (5%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           + ++I +  RA +  E     ++++ D   VP +I F  VI    R R    A   FD +
Sbjct: 189 FTILIRRYVRAGLASEAVHCFNRME-DYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSL 247

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRL 168
                +  V  +  L+      G++   +++F+ M+   + P+  +Y+I+I       ++
Sbjct: 248 KD-RFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQI 306

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN------VKPD 222
             A  VF +M+     P  +TF  L       +RV       E +++VYN       +PD
Sbjct: 307 SRAHDVFADMLDSGCAPNAITFNNL-------MRVHVKAGRTEKVLQVYNQMKKLGCEPD 359

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              +  LI+  C    L  A+ V   M++ K E++A  ++++   + K    N    +  
Sbjct: 360 TITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYS 419

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +M E  C+PN+VTYN L+  F   +  +    +  EM DK  + N  +Y +++   C  G
Sbjct: 420 KMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMG 479



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 2/189 (1%)

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YN +I      R+ + AW + D M  R ++ ++ TF  LI          EA+    + M
Sbjct: 154 YNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCF-NRM 212

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
             Y   PD   F+ +I  L      S A    + + +D+ E D  +Y++L+    +AG  
Sbjct: 213 EDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSL-KDRFEPDVIVYTNLVRGWCRAGEI 271

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +E   + KEMK  G +PN  TY+ +I   C+      A  +  +M D GC  N I++N +
Sbjct: 272 SEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNL 331

Query: 335 LGGLCKDGK 343
           +    K G+
Sbjct: 332 MRVHVKAGR 340



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 98/242 (40%), Gaps = 37/242 (15%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y ++I  L R         +   +  D+   P  I F N++  + +A   E+ LQ+
Sbjct: 289 NVYTYSIVIDALCRCGQISRAHDVFADML-DSGCAPNAITFNNLMRVHVKAGRTEKVLQV 347

Query: 106 FDEMSSF--------------------NVQMTVKFFNTLLNPKL-----TCGKLDRMKE- 139
           +++M                       N++  VK  NT++  K      T   + R  E 
Sbjct: 348 YNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEK 407

Query: 140 ----------LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
                       ++ME    P+  +YNIL+   V S+  +   K+  EM  + ++P + T
Sbjct: 408 KRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNT 467

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           +  L+   C     + A KL ++++    + P   ++  ++  L   G+L     + E+M
Sbjct: 468 YRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKM 527

Query: 250 VR 251
           ++
Sbjct: 528 IQ 529


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 151/311 (48%), Gaps = 9/311 (2%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D   H   P   N + Y  +I  L +    +E  Q+L ++      VP    F +VI   
Sbjct: 242 DMTKHGCVP---NSVIYQTLIHSLSKCNRVNEALQLLEEM-FLMGCVPDAETFNDVILGL 297

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC 153
            +   +  A +M + M           +  L+N     G++D  K+LF  + K   P+  
Sbjct: 298 CKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK---PEIV 354

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +N LIHG V   RL+DA  V  +MV    + P + T+ +LIYG   E  V  AL++  D
Sbjct: 355 IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHD 414

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            MR    KP+   +  L+ G C +G++  A  V  EM  D ++ +   ++ LISA  K  
Sbjct: 415 -MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEH 473

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           R  E   I +EM  +GCKP+  T+N+LISG C+ ++ + A  +L +M  +G  AN ++YN
Sbjct: 474 RIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYN 533

Query: 333 VILGGLCKDGK 343
            ++    + G+
Sbjct: 534 TLINAFLRRGE 544



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 164/339 (48%), Gaps = 10/339 (2%)

Query: 8   LACLPRLQ--KDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDE 65
           + C+P  +   D  L L  F   N          ++ F  + + Y  ++  L +    D 
Sbjct: 281 MGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDA 340

Query: 66  MQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124
            + + +++       P+ +IF  +I GF    RL +    + D ++S+ +   V  +N+L
Sbjct: 341 AKDLFYRIPK-----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSL 395

Query: 125 LNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
           +      G +    E+   M  K   P+  SY IL+ G     ++++A+ V +EM    L
Sbjct: 396 IYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGL 455

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
           +P  V F  LI   C E R+ EA+++  ++ R    KPD   F SLI GLC V E+  AL
Sbjct: 456 KPNTVGFNCLISAFCKEHRIPEAVEIFREMPR-KGCKPDVYTFNSLISGLCEVDEIKHAL 514

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            +  +M+ + +  +   Y++LI+A  + G   E   ++ EM  +G   + +TYN+LI G 
Sbjct: 515 WLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGL 574

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           C+  + + A ++ ++M   G   + IS N+++ GLC+ G
Sbjct: 575 CRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSG 613



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 140/283 (49%), Gaps = 13/283 (4%)

Query: 64  DEMQQILHQLKHDTR--IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
           +E+   L  L+  T+   VP  +I+  +I    +   +  ALQ+ +EM         + F
Sbjct: 231 NEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETF 290

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKYV----SPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           N ++   L   K DR+ E  +++ + +    +PD  +Y  L++G     R++ A  +F  
Sbjct: 291 NDVI---LGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYR 347

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           + K    P +V F TLI+G     R+D+A  +  D++  Y + PD   + SLI G    G
Sbjct: 348 IPK----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEG 403

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
            + LAL V  +M     + +   Y+ L+    K G+ +E   +L EM   G KPN+V +N
Sbjct: 404 LVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFN 463

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            LIS FCKE     A  I  EM  KGCK +  ++N ++ GLC+
Sbjct: 464 CLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCE 506



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 157/339 (46%), Gaps = 44/339 (12%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           +R++   Y ++I KLG    F  + ++L Q+K D  IV KE +F +++  Y +A    + 
Sbjct: 107 YRHSFDVYQVLIGKLGANGEFKTIDRLLIQMK-DEGIVFKESLFISIMRDYDKAGFPGQT 165

Query: 103 LQMFDEMSS-FNVQMTVKFFNTLLN------------------------PKL-------- 129
            ++  EM + ++ + T K +N +L                         P L        
Sbjct: 166 TRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMK 225

Query: 130 ---TCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
                 ++D    L + M K+   P++  Y  LIH      R+ +A ++ +EM      P
Sbjct: 226 AFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVP 285

Query: 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
              TF  +I GLC   R++EA K+  + M +    PD   +  L+ GLC +G +  A  +
Sbjct: 286 DAETFNDVILGLCKFDRINEAAKMV-NRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDL 344

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM-KERGCKPNSVTYNALISGFC 304
              + + +I     I+++LI      GR ++  A+L +M    G  P+  TYN+LI G+ 
Sbjct: 345 FYRIPKPEIV----IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYW 400

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           KE     A  +L +M +KGCK N  SY +++ G CK GK
Sbjct: 401 KEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGK 439



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 140/315 (44%), Gaps = 35/315 (11%)

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
            D+ + +L  +     IVP    + ++I  Y +  L+  AL++  +M +   +  V  + 
Sbjct: 369 LDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYT 428

Query: 123 TLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
            L++     GK+D    +   M    + P+   +N LI       R+ +A ++F EM ++
Sbjct: 429 ILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRK 488

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR-------------------------- 215
             +P + TF +LI GLC    +  AL L  D++                           
Sbjct: 489 GCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEA 548

Query: 216 -------VYNVKP-DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
                  V+   P D   + SLIKGLC  GE+  A  + E+M+RD         + LI+ 
Sbjct: 549 RKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILING 608

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L ++G   E     KEM  RG  P+ VT+N+LI+G C+    E   T+  ++  +G   +
Sbjct: 609 LCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPD 668

Query: 328 PISYNVILGGLCKDG 342
            +++N ++  LCK G
Sbjct: 669 TVTFNTLMSWLCKGG 683



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 147/294 (50%), Gaps = 9/294 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y +++    +    DE   +L+++  D  + P  + F  +I  + +   +  A+++
Sbjct: 423 NVYSYTILVDGFCKLGKIDEAYNVLNEMSADG-LKPNTVGFNCLISAFCKEHRIPEAVEI 481

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHG 161
           F EM     +  V  FN+L++    C ++D +K    ++   +S     +  +YN LI+ 
Sbjct: 482 FREMPRKGCKPDVYTFNSLISG--LC-EVDEIKHALWLLRDMISEGVVANTVTYNTLINA 538

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
            +    +++A K+ +EMV +      +T+ +LI GLC    VD+A  L E ++R  +  P
Sbjct: 539 FLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHA-P 597

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
                  LI GLC  G +  A+  ++EMV      D   ++SLI+ L +AGR  +   + 
Sbjct: 598 SNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMF 657

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           ++++  G  P++VT+N L+S  CK      A  +LDE  + G   N  +++++L
Sbjct: 658 RKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILL 711



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 130/279 (46%), Gaps = 6/279 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           N+  A  LKP   N + ++ +I+   +     E  +I  ++       P    F ++I  
Sbjct: 448 NEMSADGLKP---NTVGFNCLISAFCKEHRIPEAVEIFREMPRKG-CKPDVYTFNSLISG 503

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-D 151
                 ++ AL +  +M S  V      +NTL+N  L  G++   ++L   M    SP D
Sbjct: 504 LCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLD 563

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +YN LI G   +  ++ A  +F++M++    P+ ++   LI GLC    V+EA++ ++
Sbjct: 564 EITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQK 623

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           + M +    PD   F SLI GLC  G +   L +  ++  + I  D   +++L+S L K 
Sbjct: 624 E-MVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKG 682

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
           G   +   +L E  E G  PN  T++ L+     +E  +
Sbjct: 683 GFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQETLD 721


>gi|326487712|dbj|BAK05528.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 455

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 124/213 (58%), Gaps = 4/213 (1%)

Query: 135 DRMKELFQIMEKYV-SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR---LQPTLVTF 190
           D + +L  +  KY+ +P+ C YNILI   V +   E A++V DEM +     ++P LVT+
Sbjct: 182 DLIADLRDLRNKYLPAPNTCVYNILIKHYVKNGDSETAFRVLDEMREYTCGDVRPNLVTY 241

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
            TL+ GLC   ++ EA +L E ++   ++ PD   +  +I G C +G++  A  +   M 
Sbjct: 242 STLLGGLCRAGKMKEAFELFEGMIEKDHIVPDQLTYNVIIDGFCRLGQVEKARTIFGFMR 301

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
           +++ E +A  Y++LI+   K G       + +EM+  G +P++V+Y ALI   C+    +
Sbjct: 302 KNECEPNAFNYATLINGHCKKGDVENAKLVFEEMRSAGVEPDAVSYTALIGCLCRHGSVD 361

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               ++ EM +KGCKA+ ++YN++L GLCKDG+
Sbjct: 362 EGIDLVMEMREKGCKADVVTYNLLLEGLCKDGR 394



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 116/248 (46%), Gaps = 6/248 (2%)

Query: 70  LHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF---NVQMTVKFFNTLLN 126
           L  L++     P   ++  +I  Y +    E A ++ DEM  +   +V+  +  ++TLL 
Sbjct: 187 LRDLRNKYLPAPNTCVYNILIKHYVKNGDSETAFRVLDEMREYTCGDVRPNLVTYSTLLG 246

Query: 127 PKLTCGKLDRMKELFQ--IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ 184
                GK+    ELF+  I + ++ PD  +YN++I G     ++E A  +F  M K   +
Sbjct: 247 GLCRAGKMKEAFELFEGMIEKDHIVPDQLTYNVIIDGFCRLGQVEKARTIFGFMRKNECE 306

Query: 185 PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
           P    + TLI G C +  V+ A KL  + MR   V+PD   + +LI  LC  G +   + 
Sbjct: 307 PNAFNYATLINGHCKKGDVENA-KLVFEEMRSAGVEPDAVSYTALIGCLCRHGSVDEGID 365

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           +  EM     + D   Y+ L+  L K GR  E   +L  + E G + N  +Y  +++  C
Sbjct: 366 LVMEMREKGCKADVVTYNLLLEGLCKDGRMAEVMDLLGRLPEEGVQLNVASYRIVMNTLC 425

Query: 305 KEEDFEAA 312
              D E A
Sbjct: 426 SSGDMEKA 433



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 3/168 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R NL+ Y  ++  L RA    E  ++   +     IVP ++ +  +I  + R   +E+A 
Sbjct: 235 RPNLVTYSTLLGGLCRAGKMKEAFELFEGMIEKDHIVPDQLTYNVIIDGFCRLGQVEKAR 294

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
            +F  M     +     + TL+N     G ++  K +F+ M    V PDA SY  LI GC
Sbjct: 295 TIFGFMRKNECEPNAFNYATLINGHCKKGDVENAKLVFEEMRSAGVEPDAVSYTALI-GC 353

Query: 163 VVSR-RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           +     +++   +  EM ++  +  +VT+  L+ GLC + R+ E + L
Sbjct: 354 LCRHGSVDEGIDLVMEMREKGCKADVVTYNLLLEGLCKDGRMAEVMDL 401


>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Glycine max]
          Length = 729

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 167/336 (49%), Gaps = 16/336 (4%)

Query: 13  RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ 72
           RL KDP  AL+ FK              K F +    Y +++  LGR +  +  +  L  
Sbjct: 86  RLIKDPSKALRFFKWTQQ----------KGFSHTPESYFIMLEILGRERNLNVARNFLFS 135

Query: 73  L-KHDTRIVPKEIIFCN-VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130
           + KH    V  E  F N +I  Y  A L + ++++F  M S  V  +V  FN+L++  L 
Sbjct: 136 IEKHSKGTVKLEDRFFNSLIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLK 195

Query: 131 CGKLDRMKELF-QIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
            G+ +  KE++ +++  Y VSPD C+YN+LI G   +  +++ ++ F EM        +V
Sbjct: 196 RGRTNMAKEVYDEMLGTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVV 255

Query: 189 TFGTLIYGLCLELRVDEALKLKEDI-MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           T+ TL+ GLC   +V  A  L   +  +   + P+   + +LI+G C   E+  AL V E
Sbjct: 256 TYNTLVDGLCRAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLE 315

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK-ERGCKPNSVTYNALISGFCKE 306
           EM    ++ +   Y++L+  L +A + ++   +L+ MK + G  P++ T+N +I   C  
Sbjct: 316 EMTSRGLKPNMITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCA 375

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            + + A  + + M      A+  SY+ ++  LC+ G
Sbjct: 376 GNLDEALKVFESMKKFRIPADSASYSTLIRSLCQKG 411



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 146/300 (48%), Gaps = 14/300 (4%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           I+ K GR  M    +++  ++     + P    +  +I  + +  +++   + F EM SF
Sbjct: 192 ILLKRGRTNM---AKEVYDEMLGTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESF 248

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY---VSPDACSYNILIHGCVVSRRLE 169
           N    V  +NTL++     GK+   + L   M K    ++P+  +Y  LI G  + + +E
Sbjct: 249 NCDADVVTYNTLVDGLCRAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVE 308

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           +A  V +EM  R L+P ++T+ TL+ GLC   ++D+   + E +       PD   F ++
Sbjct: 309 EALVVLEEMTSRGLKPNMITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTI 368

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER-- 287
           I   C  G L  AL V E M + +I  D+  YS+LI +L + G  +    +  E+ E+  
Sbjct: 369 IHLHCCAGNLDEALKVFESMKKFRIPADSASYSTLIRSLCQKGDYDMAEQLFDELFEKEI 428

Query: 288 -----GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
                G KP + +YN +    C+    + A  ++ ++  +G + +P SY  ++ G CK+G
Sbjct: 429 LLSKFGSKPLAASYNPIFESLCEHGKTKKAERVIRQLMKRGTQ-DPQSYTTVIMGHCKEG 487



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 115/255 (45%), Gaps = 39/255 (15%)

Query: 94  GRARLLERA---LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VS 149
           GR R L  A   L   ++ S   V++  +FFN+L+      G      +LFQ M+   VS
Sbjct: 121 GRERNLNVARNFLFSIEKHSKGTVKLEDRFFNSLIRSYAEAGLFKESMKLFQTMKSIAVS 180

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALK 208
           P   ++N L+   +   R   A +V+DEM+    + P   T+  LI G C    VDE  +
Sbjct: 181 PSVVTFNSLMSILLKRGRTNMAKEVYDEMLGTYGVSPDTCTYNVLIRGFCKNSMVDEGFR 240

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
              + M  +N   D   + +L+ GLC  G++ +A  +   M                   
Sbjct: 241 FFRE-MESFNCDADVVTYNTLVDGLCRAGKVRIARNLVNGM------------------- 280

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
              G+K E           G  PN VTY  LI G+C +++ E A  +L+EM  +G K N 
Sbjct: 281 ---GKKCE-----------GLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNM 326

Query: 329 ISYNVILGGLCKDGK 343
           I+YN ++ GLC+  K
Sbjct: 327 ITYNTLVKGLCEAHK 341



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 131/292 (44%), Gaps = 13/292 (4%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP   N++ Y+ ++  L  A   D+M+ +L ++K D    P    F  +I  +  A  L
Sbjct: 322 LKP---NMITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNL 378

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYV-------SPD 151
           + AL++F+ M  F +      ++TL+      G  D  ++LF ++ EK +        P 
Sbjct: 379 DEALKVFESMKKFRIPADSASYSTLIRSLCQKGDYDMAEQLFDELFEKEILLSKFGSKPL 438

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
           A SYN +        + + A +V  +++KR  Q    ++ T+I G C E   +   +L  
Sbjct: 439 AASYNPIFESLCEHGKTKKAERVIRQLMKRGTQDP-QSYTTVIMGHCKEGAYESGYELLM 497

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            ++R  +  PD +++  LI G     +  LA    E+M++   +     + S+++ L + 
Sbjct: 498 WMLR-RDFLPDIEIYDYLIDGFLQKDKPLLAKETLEKMLKSSYQPKTSTWHSVLAKLLEK 556

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           G  +E   ++  M E+  + N       +      E  E AF I++ +   G
Sbjct: 557 GCAHESSCVIVMMLEKNVRQNINLSTESLQLLFGREQHERAFEIINLLYKNG 608



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 112/263 (42%), Gaps = 42/263 (15%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  +I  Y   + +E AL + +EM+S  ++  +  +NTL+       KLD+MK++
Sbjct: 289 PNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVKGLCEAHKLDKMKDV 348

Query: 141 FQIMEK--YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            + M+     SPD  ++N +IH    +  L++A KVF+ M K R+     ++ TLI  LC
Sbjct: 349 LERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIPADSASYSTLIRSLC 408

Query: 199 LELRVDEALKL------KEDIMRVYNVKP------------------------------- 221
            +   D A +L      KE ++  +  KP                               
Sbjct: 409 QKGDYDMAEQLFDELFEKEILLSKFGSKPLAASYNPIFESLCEHGKTKKAERVIRQLMKR 468

Query: 222 ---DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
              D Q + ++I G C  G       +   M+R     D  IY  LI    +  +     
Sbjct: 469 GTQDPQSYTTVIMGHCKEGAYESGYELLMWMLRRDFLPDIEIYDYLIDGFLQKDKPLLAK 528

Query: 279 AILKEMKERGCKPNSVTYNALIS 301
             L++M +   +P + T++++++
Sbjct: 529 ETLEKMLKSSYQPKTSTWHSVLA 551


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 150/304 (49%), Gaps = 3/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  R ++  Y  ++  L + + F+  +++++++  +   VP E    N++    +   + 
Sbjct: 279 KGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMI-EFGFVPSEAAVSNLVDGLRKKGNIG 337

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            A  + +++  F V  ++  +N L+N     GKLD  + LF  M  K + P+  +Y+ILI
Sbjct: 338 SAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILI 397

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
                  +L+ A     +M +  ++ T+  + +LI G C +L    A K   D M    +
Sbjct: 398 DSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHC-KLGKLRAAKSLFDEMIANGL 456

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           KP+  ++ SLI G C  GEL  A  +  EM    I  +   +++LIS L  A R  E   
Sbjct: 457 KPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANK 516

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +  EM E    PN VTYN LI G CKE +   AF +LDEM +KG   +  +Y  ++ GLC
Sbjct: 517 LFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLC 576

Query: 340 KDGK 343
             G+
Sbjct: 577 STGR 580



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 147/334 (44%), Gaps = 54/334 (16%)

Query: 56  KLGRAK----MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111
           KLG+ +    +FDEM  I + LK      P  +I+ ++I  Y +   L  A +++ EM+ 
Sbjct: 437 KLGKLRAAKSLFDEM--IANGLK------PNVVIYTSLISGYCKEGELHNAFRLYHEMTG 488

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLED 170
             +      F  L++      ++    +LF +++E  V P+  +YN+LI G         
Sbjct: 489 KGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVR 548

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM-------RVYNVKPDG 223
           A+++ DEMV++ L P   T+  LI GLC   RV EA +   D+         +    P+ 
Sbjct: 549 AFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNV 608

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVR--------------DKIEMDAGI--------- 260
             + +LI GLC +G +  A  +  EM+               D +  +  I         
Sbjct: 609 VTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDV 668

Query: 261 -----------YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
                      Y+ LI    K GR  E   +L  M + G  P+ ++Y+ +I  +C+  D 
Sbjct: 669 LLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDL 728

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + A  + + M ++G   + ++YN ++ G C  G+
Sbjct: 729 KEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGE 762



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 145/301 (48%), Gaps = 11/301 (3%)

Query: 48  LHYDLII-TKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMF 106
           L +DL+I T +   +  D +  ++ +L  D  I+P+      V+    R R    AL +F
Sbjct: 146 LGFDLLIQTYVQNRRELDGL--VVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLF 203

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVS 165
           DE+ S  ++  V  +  ++          R +E+   ME         +YN+ I G   +
Sbjct: 204 DEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKN 263

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR---VYNVKPD 222
           +R+ +A ++ + +  + L+  + T+ TL+ GLC   +V+E  +  E++M     +   P 
Sbjct: 264 QRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLC---KVEE-FEAGEEMMNEMIEFGFVPS 319

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
               ++L+ GL   G +  A  +  ++ +  +     +Y++LI+++ K G+ +E  ++  
Sbjct: 320 EAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFN 379

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            M  +G  PN VTY+ LI  FCK    + A   L +M + G KA    Y+ ++ G CK G
Sbjct: 380 NMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLG 439

Query: 343 K 343
           K
Sbjct: 440 K 440



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 100/196 (51%), Gaps = 4/196 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L +  + D+ + +  ++     + P +  +   + +      +E+A+Q+
Sbjct: 607 NVVTYTALINGLCKIGLMDKAELLCREMLASNSL-PNQNTYACFLDYLTSEGNIEKAIQL 665

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNILIHGCVV 164
            D +    +  TV + N L+      G++    E L  +++  +SPD  SY+ +I+    
Sbjct: 666 HDVLLEGFLANTVTY-NILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCR 724

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++A K+++ M+ R + P  V +  LIYG C+   + +A +L++D+MR   VKP+  
Sbjct: 725 RGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMR-RGVKPNRA 783

Query: 225 VFASLIKGLCAVGELS 240
            + SLI G C +  +S
Sbjct: 784 TYNSLIHGTCLMSSVS 799


>gi|357512797|ref|XP_003626687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355520709|gb|AET01163.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 501

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 118/213 (55%), Gaps = 3/213 (1%)

Query: 130 TCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM-VKRRLQPTL 187
           T  ++D   EL  ++  K+ SPD  SYN L+     SR L   +   DEM  K  ++P L
Sbjct: 175 TADRVDDAVELIKELSSKHCSPDIYSYNFLVKNLCKSRTLSLVYAFIDEMRTKFDVKPNL 234

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           VT+  LI  +C    + EA +L  DI+     KPD  ++ +++KG C +   S A+ V  
Sbjct: 235 VTYTILIDNVCNTKNLREATRLV-DILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYN 293

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
            M    +E D   Y++LI  L K+GR +E   +L+ M E+G  P+ VTY +L++G C++ 
Sbjct: 294 RMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKG 353

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +  AA  +L+EM  KGC  N  +YN +L GLCK
Sbjct: 354 ETLAALALLEEMEMKGCSPNTCTYNTLLHGLCK 386



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 128/298 (42%), Gaps = 45/298 (15%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM- 109
           DL +  L  A   D+  +++ +L       P    +  ++    ++R L       DEM 
Sbjct: 167 DLAVRSLCTADRVDDAVELIKELS-SKHCSPDIYSYNFLVKNLCKSRTLSLVYAFIDEMR 225

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
           + F+V+  +  +  L++       L     L  I+E+    PD   YN ++ G  +  R 
Sbjct: 226 TKFDVKPNLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRG 285

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK---PDGQV 225
            +A +V++ M ++ ++P L+T+ TLI+GL    RV EA KL    +RV   K   PD   
Sbjct: 286 SEAIEVYNRMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKL----LRVMAEKGHFPDEVT 341

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + SL+ G+C  GE   AL + EEM                                 EMK
Sbjct: 342 YTSLMNGMCRKGETLAALALLEEM---------------------------------EMK 368

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             GC PN+ TYN L+ G CK   F+ A  +   M   G K +  SY   +  LC  G+
Sbjct: 369 --GCSPNTCTYNTLLHGLCKSRMFDKAMELYGAMKSDGLKLDMASYATFVRALCSVGR 424



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 111/232 (47%), Gaps = 5/232 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ Y ++I  +   K   E  +++  L+ +    P   ++  ++  Y        A+++
Sbjct: 233 NLVTYTILIDNVCNTKNLREATRLVDILEEEG-FKPDCFLYNTIMKGYCMLSRGSEAIEV 291

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           ++ M    V+  +  +NTL+      G++   K+L ++M EK   PD  +Y  L++G   
Sbjct: 292 YNRMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCR 351

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
                 A  + +EM  +   P   T+ TL++GLC     D+A++L    M+   +K D  
Sbjct: 352 KGETLAALALLEEMEMKGCSPNTCTYNTLLHGLCKSRMFDKAMELY-GAMKSDGLKLDMA 410

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL--FKAGRK 274
            +A+ ++ LC+VG ++ A  V +  V  K   D   YS+L S L  FK  ++
Sbjct: 411 SYATFVRALCSVGRVADAYEVFDYAVESKSLSDVAAYSTLESTLKWFKKAKE 462



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 8/183 (4%)

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTF-GTLIYGLCLELRVDEALKLKEDIMRVY-NVKPD 222
           S  L++A  +F+  V     P    F  +L+        +++++     + + + +  PD
Sbjct: 63  SPNLQEAKSIFNSFVNSSNAPIDSRFHNSLLQSYASISTINDSIAFLRHMTKTHPSFSPD 122

Query: 223 GQVFASLIKGLCAVGE-----LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
              +  L+   C   +     LSL       MV D I  D G     + +L  A R ++ 
Sbjct: 123 KSTYHILLTHCCKSTDSKYSTLSLIHQTLNLMVSDGISPDKGTVDLAVRSLCTADRVDDA 182

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK-GCKANPISYNVILG 336
             ++KE+  + C P+  +YN L+   CK       +  +DEM  K   K N ++Y +++ 
Sbjct: 183 VELIKELSSKHCSPDIYSYNFLVKNLCKSRTLSLVYAFIDEMRTKFDVKPNLVTYTILID 242

Query: 337 GLC 339
            +C
Sbjct: 243 NVC 245


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 156/305 (51%), Gaps = 5/305 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV-PKEIIFCNVIGFYGRARLL 99
           K F+ N + Y  +I  L +A       Q+L  +  D  +V P  +++  +I    + +L+
Sbjct: 78  KGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNI--DGLLVQPNVVMYSTIIYSLCKDKLV 135

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNIL 158
             A  ++ +M    +   V  +NTL+   L  G+L     LF Q++ K + PD  ++NIL
Sbjct: 136 IDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNIL 195

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           + G      ++ A  V   M+K+ + P ++T+ +L+ G  L  + ++A  +   + R   
Sbjct: 196 VDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMAR-RG 254

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V PD   ++ +I GLC    +  A+ + +EM    +  +   YSSLI  L K+GR  +  
Sbjct: 255 VTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAW 314

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            ++ EM  RG   + +TYN+L+   CK    + A T+L ++ D+G + +  +Y +++ GL
Sbjct: 315 DLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDGL 374

Query: 339 CKDGK 343
           CK+G+
Sbjct: 375 CKNGR 379



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 127/246 (51%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNI 157
           ++  L   D++ +   Q+    + TL++     G+    M+ L  I    V P+   Y+ 
Sbjct: 65  VKETLHFHDDVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYST 124

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I+     + + DA+ ++ +M+ +R+ P ++T+ TL+YG  +  R+ EA+ L    M + 
Sbjct: 125 IIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQ-MLLK 183

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N+KPD   F  L+ GLC  GE+  A  V   M++  ++ D   Y+SL+   F   ++N+ 
Sbjct: 184 NIKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKA 243

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +   M  RG  P+  +Y+ +I+G CK +  + A  +L EM  K    N ++Y+ ++ G
Sbjct: 244 TFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDG 303

Query: 338 LCKDGK 343
           L K G+
Sbjct: 304 LHKSGR 309



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 159/325 (48%), Gaps = 44/325 (13%)

Query: 46  NLLHYDLIITKLGRAKM----FDEMQQILHQLKHDTRIVPKEIIF------CNVIGFYGR 95
           N++ Y  II  L + K+    FD   Q+L +     RI P  I +      C ++G    
Sbjct: 118 NVVMYSTIIYSLCKDKLVIDAFDLYSQMLLK-----RISPDVITYNTLMYGCLIVG---- 168

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACS 154
              L+ A+ +F++M   N++  +  FN L++     G++ + + +  +M ++ V PD  +
Sbjct: 169 --RLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVIT 226

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YN L+ G  + ++   A  VF+ M +R + P + ++  +I GLC    VDEA+ L ++ M
Sbjct: 227 YNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKE-M 285

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
              ++ P+   ++SLI GL   G +  A  +  EM       D   Y+SL+ AL K  + 
Sbjct: 286 HSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLDALCKNHQV 345

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCK---------------------EEDFEAAF 313
           ++   +L ++K++G +P+  TY  L+ G CK                     +  F+ A 
Sbjct: 346 DKAITLLTKIKDQGIQPDIYTYTILVDGLCKNGRLKDAQEVYQILLIKGYHLDSLFDKAL 405

Query: 314 TILDEMGDKGCKANPISYNVILGGL 338
           ++L +M D GC  NP+++ +++  L
Sbjct: 406 SLLSKMEDNGCTPNPVTFEILIRAL 430


>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
 gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
 gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
          Length = 506

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 153/300 (51%), Gaps = 3/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-IVPKEIIFCNVIGFYGRARLLERALQ 104
           N+  + +I+  L       E  ++LH +  D    +P  + +  VI    +    ++A  
Sbjct: 160 NVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAYA 219

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV 163
            + EM    +   V  +++++        +D+  E+   M K  V+P+  +Y  L+HG  
Sbjct: 220 TYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFC 279

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            S +L +A K  ++M    ++P +VT+ + +  LC   R  EA K+ + +++   +KPD 
Sbjct: 280 SSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVK-RGLKPDI 338

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             ++SL+ G    G L    G+ + MV+  ++ D  ++++LI A  K G+ +E   +  +
Sbjct: 339 TTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSK 398

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M+++G KPN VTY+ LI+G+CK    E A  +  EM   G   N I+YN++L GL + G+
Sbjct: 399 MRQQGLKPNCVTYSTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTGR 458



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 127/297 (42%), Gaps = 50/297 (16%)

Query: 95  RARL----LERALQMFDEMSSFNVQMTVKFFNTLL------NPKLTCGKLDRMKELFQIM 144
           RAR+     E AL +FDE+    +   ++  N  L      NP     + +RM      M
Sbjct: 26  RARVGSGGAEDALDVFDELLRRGIGAPIRSLNGALADVARDNPAAAVSRFNRMARAGASM 85

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
              V+P   +Y ILI  C  + RL+  +     +VK+  +   + F  L+ GLC + R D
Sbjct: 86  ---VTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTD 142

Query: 205 EALKL------------------------------KEDIMRVYNVKPDGQ-------VFA 227
           +A+ +                              +E +  ++ +  DG         ++
Sbjct: 143 DAMDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYS 202

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           ++I GL   G+   A     EM+  +I  +  IYSS+I+AL K    ++   +   M + 
Sbjct: 203 TVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKN 262

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
           G  PN  TY +L+ GFC       A   L++M   G + N ++Y+  +  LCK+G+C
Sbjct: 263 GVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRC 319


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 149/315 (47%), Gaps = 12/315 (3%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           ND  + P +P    L      I  L +A+ +D +  + H++     ++P+      +   
Sbjct: 34  NDPTSPPSEPACSTL------IDNLRKARQYDAVVSVYHKMV-SALVLPRFTSLSALTES 86

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY---VS 149
           +        A  +   M+     + V   N +L      G+ D+   LF  M++    V 
Sbjct: 87  FVNTHHPSFAFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVV 146

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKR-RLQPTLVTFGTLIYGLCLELRVDEALK 208
           PD  +YN L++G   ++RL +A  +F+ M K    +P LVT+  LI   C    V E L 
Sbjct: 147 PDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLG 206

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           L E++ R   +K D  V++SLI   C  G++     + +EM+R K+  +   YS L+  L
Sbjct: 207 LLEEMER-EGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGL 265

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            + GR  E   +LK+M  RG +P+ V Y  L  G CK      A  +LD M  KG +   
Sbjct: 266 GRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGT 325

Query: 329 ISYNVILGGLCKDGK 343
           ++YNV++ GLCK+ +
Sbjct: 326 LTYNVVVNGLCKEDR 340



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 145/286 (50%), Gaps = 11/286 (3%)

Query: 58  GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT 117
           GR ++FDEM +         ++ P  + +  ++   GR      A +M  +M++  V+  
Sbjct: 239 GR-ELFDEMLR--------RKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPD 289

Query: 118 VKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFD 176
           V  +  L +     G+  D +K L  +++K   P   +YN++++G     R++DA+ V +
Sbjct: 290 VVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVE 349

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM-RVYNVKPDGQVFASLIKGLCA 235
            MVK+  +P  VT+ TL+ GLC   ++ EA+ L + ++   ++VKPD     +LI+GLC 
Sbjct: 350 MMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCK 409

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G +  A  +   MV   ++ +   Y+ LI     A +  E   + K   E G  PNS+T
Sbjct: 410 EGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMT 469

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           Y+ +I+G CK +    A  +  +M D G +   I YN ++  LC++
Sbjct: 470 YSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCRE 515



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 148/329 (44%), Gaps = 39/329 (11%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ ++    +AK   E + +   +K      P  + +  +I  Y ++  +   L + +EM
Sbjct: 152 YNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEM 211

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM------------------------- 144
               ++  V  +++L++     G ++  +ELF  M                         
Sbjct: 212 EREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRW 271

Query: 145 -----------EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
                       + V PD  +Y +L  G   + R  DA KV D MV++  +P  +T+  +
Sbjct: 272 REASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVV 331

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           + GLC E R+D+A  + E +M     KPD   + +L+KGLC  G++  A+ + + ++ +K
Sbjct: 332 VNGLCKEDRMDDAFGVVE-MMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEK 390

Query: 254 IEMDAGIYS--SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
             +   +++  +LI  L K GR ++   I   M E G + N VTYN LI G+        
Sbjct: 391 FHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIE 450

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCK 340
           A  +     + G   N ++Y+V++ GLCK
Sbjct: 451 ALKLWKYAVESGFSPNSMTYSVMINGLCK 479



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 135/293 (46%), Gaps = 5/293 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN--VIGFYGRARLLERALQMFD 107
           Y+ ++  L  A    E   +   L  +   V  ++  CN  + G     R+ + A ++  
Sbjct: 363 YNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAA-RIHS 421

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSR 166
            M    +Q  +  +N L+   L   KL    +L++  +E   SP++ +Y+++I+G    +
Sbjct: 422 SMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQ 481

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
            L  A  +F +M    ++PT++ +  L+  LC E  +++A  L ++ MR  N   D   F
Sbjct: 482 MLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQE-MRNVNHNVDVVSF 540

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
             +I G    G++  A  +  EM    +  DA  +S LI+   K G  +E   + ++M  
Sbjct: 541 NIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVS 600

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
            G  P  V +++L+ G+  + + E   ++L +M DK    +    + IL  LC
Sbjct: 601 CGHVPGVVVFDSLLKGYGLKGETEKIISLLHQMADKDVVLDSKLTSTILACLC 653



 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 39/83 (46%)

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           S+LI  L KA + +   ++  +M      P   + +AL   F        AF++L  M  
Sbjct: 46  STLIDNLRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSVLSLMTK 105

Query: 322 KGCKANPISYNVILGGLCKDGKC 344
           +G   N  + N++L G C+ G+C
Sbjct: 106 RGFGVNVYNLNLVLKGFCRSGQC 128


>gi|3193306|gb|AAC19289.1| contains similarity to Arabidopsis membrane-associated
           salt-inducible-like protein (GB:AL021637) [Arabidopsis
           thaliana]
          Length = 991

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 167/342 (48%), Gaps = 13/342 (3%)

Query: 4   SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMF 63
           S  R+  L   Q DP LA ++F   +  PN         FR++   + ++I KLGR + F
Sbjct: 50  SPTRVQKLIASQSDPLLAKEIFDYASQQPN---------FRHSRSSHLILILKLGRGRYF 100

Query: 64  DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT 123
           + +  +L + +     +  EI F  +I  Y  A+L E+ L  F +M  FN     K  N 
Sbjct: 101 NLIDDVLAKHRSSGYPLTGEI-FTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNR 159

Query: 124 LLNPKLTC-GKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
           +L+  ++  G L +  ELF+    + V P+  SYN+L+    ++  L  A+++F +M++R
Sbjct: 160 ILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLER 219

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
            + P + ++  LI G C + +V+ A++L +D++    V PD   + +L+  LC   +L  
Sbjct: 220 DVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFV-PDRLSYTTLLNSLCRKTQLRE 278

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           A  +   M       D   Y+++I    +  R  +   +L +M   GC PNSV+Y  LI 
Sbjct: 279 AYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIG 338

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G C +  F+     L+EM  KG   +    N ++ G C  GK
Sbjct: 339 GLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGK 380


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 164/339 (48%), Gaps = 10/339 (2%)

Query: 8   LACLPRLQ--KDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDE 65
           + C+P  +   D  L L  F   N          ++ F  + + Y  ++  L +    D 
Sbjct: 275 MGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDA 334

Query: 66  MQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124
            + + +++       P  +IF  +I GF    RL +    + D ++S+ +   V  +N+L
Sbjct: 335 AKDLFYRIPK-----PTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSL 389

Query: 125 LNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
           +      G +    E+ + M  K   P+  SY IL+ G     ++++A+ + +EM    L
Sbjct: 390 IYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGL 449

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
           +P  V F  LI   C E R+ EA+++  ++ R    KPD   F SLI GLC V E+  AL
Sbjct: 450 KPNTVGFNCLISAFCKEHRIPEAVEIFREMPR-KGCKPDVYTFNSLISGLCEVDEIKHAL 508

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            +  +M+ + +  +   Y++LI+A  + G   E   ++ EM  +G   + +TYN+LI G 
Sbjct: 509 WLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGL 568

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           C+  + + A ++ ++M   G   + IS N+++ GLC+ G
Sbjct: 569 CRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSG 607



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 144/300 (48%), Gaps = 14/300 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
            L  + +++  L      D    +L  + KH    VP  +I+  +I    +   +  ALQ
Sbjct: 210 TLFTFGVVMKALCAVNEVDSALSVLRDMTKHGC--VPNSVIYQTLIHSLSKCNRVNEALQ 267

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV----SPDACSYNILIH 160
           + +EM         + FN ++   L   K DR+ E  +++ + +    +PD  +Y  L++
Sbjct: 268 LLEEMFLMGCVPDAETFNDVI---LGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMN 324

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     R++ A  +F  + K    PT V F TLI+G     R+D+A  +  D++  Y + 
Sbjct: 325 GLCKIGRVDAAKDLFYRIPK----PTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIV 380

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   + SLI G    G + LAL V  +M     + +   Y+ L+    K G+ +E   +
Sbjct: 381 PDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNL 440

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L EM   G KPN+V +N LIS FCKE     A  I  EM  KGCK +  ++N ++ GLC+
Sbjct: 441 LNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCE 500



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 151/311 (48%), Gaps = 9/311 (2%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D   H   P   N + Y  +I  L +    +E  Q+L ++      VP    F +VI   
Sbjct: 236 DMTKHGCVP---NSVIYQTLIHSLSKCNRVNEALQLLEEM-FLMGCVPDAETFNDVILGL 291

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC 153
            +   +  A +M + M           +  L+N     G++D  K+LF  + K   P + 
Sbjct: 292 CKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK---PTSV 348

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +N LIHG V   RL+DA  V  +MV    + P + T+ +LIYG   +  V  AL++  D
Sbjct: 349 IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRD 408

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            MR    KP+   +  L+ G C +G++  A  +  EM  D ++ +   ++ LISA  K  
Sbjct: 409 -MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEH 467

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           R  E   I +EM  +GCKP+  T+N+LISG C+ ++ + A  +L +M  +G  AN ++YN
Sbjct: 468 RIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYN 527

Query: 333 VILGGLCKDGK 343
            ++    + G+
Sbjct: 528 TLINAFLRRGE 538



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 155/341 (45%), Gaps = 44/341 (12%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI------GFYG 94
           K +R++   Y ++I KLG    F  + ++L Q+K D  IV KE +F +++      GF G
Sbjct: 99  KGYRHSFDVYQVLIGKLGSNGEFKTIDRLLMQMK-DEGIVFKESLFISIMRDYDKAGFPG 157

Query: 95  RARLL------------------------------ERALQMFDEMSSFNVQMTVKFFNTL 124
           +   L                              + A  +F +M S  +  T+  F  +
Sbjct: 158 QTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVV 217

Query: 125 LNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
           +       ++D    + + M K+   P++  Y  LIH      R+ +A ++ +EM     
Sbjct: 218 MKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGC 277

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P   TF  +I GLC   R++EA K+    M +    PD   +  L+ GLC +G +  A 
Sbjct: 278 VPDAETFNDVILGLCKFDRINEAAKMVNR-MLIRGFTPDDITYGYLMNGLCKIGRVDAA- 335

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM-KERGCKPNSVTYNALISG 302
              +++     +  + I+++LI      GR ++  A+L +M    G  P+  TYN+LI G
Sbjct: 336 ---KDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYG 392

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + K+     A  +L +M +KGCK N  SY +++ G CK GK
Sbjct: 393 YWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGK 433



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 144/315 (45%), Gaps = 35/315 (11%)

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
            D+ + +L  +     IVP    + ++I  Y +  L+  AL++  +M +   +  V  + 
Sbjct: 363 LDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYT 422

Query: 123 TLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
            L++     GK+D    L   M    + P+   +N LI       R+ +A ++F EM ++
Sbjct: 423 ILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRK 482

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR--------VYNVKPD-----GQV--- 225
             +P + TF +LI GLC    +  AL L  D++          YN   +     G++   
Sbjct: 483 GCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEA 542

Query: 226 ------------------FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
                             + SLIKGLC  GE+  A  + E+M+RD +   +   + LI+ 
Sbjct: 543 RKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILING 602

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L ++G   E     KEM  RG  P+ VT+N+LI+G C+    E   T+  ++  +G   +
Sbjct: 603 LCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPD 662

Query: 328 PISYNVILGGLCKDG 342
            ++YN ++  LCK G
Sbjct: 663 TVTYNTLMSWLCKGG 677



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 151/302 (50%), Gaps = 19/302 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y +++    +    DE   +L+++  D  + P  + F  +I  + +   +  A+++
Sbjct: 417 NVYSYTILVDGFCKLGKIDEAYNLLNEMSADG-LKPNTVGFNCLISAFCKEHRIPEAVEI 475

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHG 161
           F EM     +  V  FN+L++    C ++D +K    ++   +S     +  +YN LI+ 
Sbjct: 476 FREMPRKGCKPDVYTFNSLISG--LC-EVDEIKHALWLLRDMISEGVVANTVTYNTLINA 532

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
            +    +++A K+ +EMV +      +T+ +LI GLC    VD+A  L E ++R      
Sbjct: 533 FLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLR------ 586

Query: 222 DGQVFAS-----LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           DG V +S     LI GLC  G +  A+  ++EMV      D   ++SLI+ L +AGR  +
Sbjct: 587 DGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIED 646

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              + ++++  G  P++VTYN L+S  CK      A  +LDE  + G   N  +++++L 
Sbjct: 647 GLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQ 706

Query: 337 GL 338
            L
Sbjct: 707 SL 708



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 130/279 (46%), Gaps = 6/279 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           N+  A  LKP   N + ++ +I+   +     E  +I  ++       P    F ++I  
Sbjct: 442 NEMSADGLKP---NTVGFNCLISAFCKEHRIPEAVEIFREMPRKG-CKPDVYTFNSLISG 497

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-D 151
                 ++ AL +  +M S  V      +NTL+N  L  G++   ++L   M    S  D
Sbjct: 498 LCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLD 557

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +YN LI G   +  ++ A  +F++M++  L P+ ++   LI GLC    V+EA++ ++
Sbjct: 558 EITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQK 617

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           + M +    PD   F SLI GLC  G +   L +  ++  + I  D   Y++L+S L K 
Sbjct: 618 E-MVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKG 676

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
           G   +   +L E  E G  PN  T++ L+     +E  +
Sbjct: 677 GFVYDACLLLDEGIEDGFVPNDRTWSILLQSLVPQETLD 715


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 129/278 (46%), Gaps = 40/278 (14%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL 158
           L+ A+Q+F E+   N       +N LL    T G++    +LF  M     PD  +Y I+
Sbjct: 238 LDEAVQLFQELPEKNTCS----YNILLKALCTAGRIKDAHQLFDEMAS--PPDVVTYGIM 291

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI----- 213
           +HG      LE A K+  EM  R L+   V + ++I  LC E +V +A+++ ED+     
Sbjct: 292 VHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGV 351

Query: 214 -----------------------------MRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
                                        M+   +  DG  + +LI GLC  GEL  A  
Sbjct: 352 VLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAER 411

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           V +EM    +++DA  Y+ LI    K G+  E   +  +M ++   PN VTY AL  G C
Sbjct: 412 VLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLC 471

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           K+ D  AA  +L EM  KG + N  +YN ++ GLCK G
Sbjct: 472 KQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAG 509



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 117/207 (56%), Gaps = 4/207 (1%)

Query: 137 MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           + E  Q+ ++    + CSYNIL+     + R++DA ++FDEM      P +VT+G +++G
Sbjct: 238 LDEAVQLFQELPEKNTCSYNILLKALCTAGRIKDAHQLFDEMAS---PPDVVTYGIMVHG 294

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
            C    ++ A+KL  + M    ++ +   + S+I  LC  G++S A+ V E+MV   + +
Sbjct: 295 YCTLSELETAIKLLSE-MAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVL 353

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           DA ++++++S   + G          EM++RG   + VTY ALI+G C+  + + A  +L
Sbjct: 354 DAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVL 413

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
            EM DKG   + ++Y V++ G CK GK
Sbjct: 414 QEMEDKGLDVDAVTYTVLIDGYCKVGK 440



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 130/261 (49%), Gaps = 2/261 (0%)

Query: 84  IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQI 143
           + + +VI        +  A+++ ++M    V +    F T+++     G L   +  F  
Sbjct: 321 VAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDE 380

Query: 144 MEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR 202
           M+K  ++ D  +Y  LI+G   +  L++A +V  EM  + L    VT+  LI G C   +
Sbjct: 381 MQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGK 440

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
           + EA  L  + M    V P+   + +L  GLC  G++  A  +  EM    +E++   Y+
Sbjct: 441 MTEAF-LVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYN 499

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           SLI+ L KAG   +    + +M E G KP+  TY  +I   C+ ++ + A ++L EM DK
Sbjct: 500 SLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDK 559

Query: 323 GCKANPISYNVILGGLCKDGK 343
           G K   ++YNV++ G C  G+
Sbjct: 560 GIKPTIVTYNVLMNGFCMSGR 580



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 131/262 (50%), Gaps = 2/262 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           +V    +F  V+  + R   L  A   FDEM    +      +  L+N     G+L   +
Sbjct: 351 VVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAE 410

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            + Q ME K +  DA +Y +LI G     ++ +A+ V ++MV++R+ P +VT+  L  GL
Sbjct: 411 RVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGL 470

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C +  V  A +L  + M    ++ +   + SLI GLC  G L  A+    +M    ++ D
Sbjct: 471 CKQGDVCAANELLHE-MCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPD 529

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+++I AL ++   +   ++L+EM ++G KP  VTYN L++GFC     E    +L+
Sbjct: 530 VYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLE 589

Query: 318 EMGDKGCKANPISYNVILGGLC 339
            M +K    N  +YN ++   C
Sbjct: 590 WMLEKNIHPNTTTYNSLMKQYC 611



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 125/265 (47%), Gaps = 2/265 (0%)

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           ++H      R+ P  + +  +     +   +  A ++  EM S  +++ +  +N+L+N  
Sbjct: 446 LVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGL 505

Query: 129 LTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
              G L++ M+ +  + E  + PD  +Y  +I     S+ L+ A  +  EM+ + ++PT+
Sbjct: 506 CKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTI 565

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           VT+  L+ G C+  RV+   +L E ++   N+ P+   + SL+K  C    +     + +
Sbjct: 566 VTYNVLMNGFCMSGRVEGGKRLLEWMLE-KNIHPNTTTYNSLMKQYCIEKNMKSTTEIYK 624

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
            M+  ++  +   Y+ LI    KA    E      EM E+G +  + +YNALI    K++
Sbjct: 625 GMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKK 684

Query: 308 DFEAAFTILDEMGDKGCKANPISYN 332
            F  A  + ++M      A P  YN
Sbjct: 685 KFTEARRLFEKMRKDRLTAEPDVYN 709



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 127/295 (43%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L RA    E +++L +++ D  +    + +  +I  Y +   +  A  + ++M
Sbjct: 393 YTALINGLCRAGELKEAERVLQEME-DKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKM 451

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
               V   V  +  L +     G +    EL   M  K +  +  +YN LI+G   +  L
Sbjct: 452 VQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL 511

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E A +   +M +  L+P + T+ T+I  LC    +D A  L ++++    +KP    +  
Sbjct: 512 EQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLD-KGIKPTIVTYNV 570

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ G C  G +     + E M+   I  +   Y+SL+              I K M  + 
Sbjct: 571 LMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQE 630

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             PN  TYN LI G CK  + + A     EM +KG +    SYN ++  L K  K
Sbjct: 631 VVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKK 685



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 107/204 (52%), Gaps = 12/204 (5%)

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L ++ +  +SP   S N ++  C +   L++A ++F E+ ++       ++  L+  LC 
Sbjct: 214 LLRLRQYGISPSPESCNAVL--CRLP--LDEAVQLFQELPEK----NTCSYNILLKALCT 265

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R+ +A +L +++       PD   +  ++ G C + EL  A+ +  EM    +E++  
Sbjct: 266 AGRIKDAHQLFDEMAS----PPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPV 321

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+S+I+ L   G+ ++   ++++M   G   ++  +  ++SGFC++ D  AA    DEM
Sbjct: 322 AYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEM 381

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             +G  A+ ++Y  ++ GLC+ G+
Sbjct: 382 QKRGLAADGVTYTALINGLCRAGE 405



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 113/235 (48%), Gaps = 2/235 (0%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IM 144
           + ++I    +A  LE+A++   +M    ++  V  + T++       +LDR   L Q ++
Sbjct: 498 YNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEML 557

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
           +K + P   +YN+L++G  +S R+E   ++ + M+++ + P   T+ +L+   C+E  + 
Sbjct: 558 DKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMK 617

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
              ++ + ++    V P+   +  LIKG C    +  AL    EM+     + A  Y++L
Sbjct: 618 STTEIYKGMLS-QEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNAL 676

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           I  L K  +  E   + ++M++         YN  I     E++ E+   + DE+
Sbjct: 677 IRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNFYIDLSFNEDNLESTLALCDEL 731


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 129/278 (46%), Gaps = 40/278 (14%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL 158
           L+ A+Q+F E+   N       +N LL    T G++    +LF  M     PD  +Y I+
Sbjct: 238 LDEAVQLFQELPEKNTCS----YNILLKALCTAGRIKDAHQLFDEMAS--PPDVVTYGIM 291

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI----- 213
           +HG      LE A K+  EM  R L+   V + ++I  LC E +V +A+++ ED+     
Sbjct: 292 VHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGV 351

Query: 214 -----------------------------MRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
                                        M+   +  DG  + +LI GLC  GEL  A  
Sbjct: 352 VLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAER 411

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           V +EM    +++DA  Y+ LI    K G+  E   +  +M ++   PN VTY AL  G C
Sbjct: 412 VLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLC 471

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           K+ D  AA  +L EM  KG + N  +YN ++ GLCK G
Sbjct: 472 KQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAG 509



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 117/207 (56%), Gaps = 4/207 (1%)

Query: 137 MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           + E  Q+ ++    + CSYNIL+     + R++DA ++FDEM      P +VT+G +++G
Sbjct: 238 LDEAVQLFQELPEKNTCSYNILLKALCTAGRIKDAHQLFDEMAS---PPDVVTYGIMVHG 294

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
            C    ++ A+KL  + M    ++ +   + S+I  LC  G++S A+ V E+MV   + +
Sbjct: 295 YCTLSELETAIKLLSE-MAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVL 353

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           DA ++++++S   + G          EM++RG   + VTY ALI+G C+  + + A  +L
Sbjct: 354 DAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVL 413

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
            EM DKG   + ++Y V++ G CK GK
Sbjct: 414 QEMEDKGLDVDAVTYTVLIDGYCKVGK 440



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 130/261 (49%), Gaps = 2/261 (0%)

Query: 84  IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQI 143
           + + +VI        +  A+++ ++M    V +    F T+++     G L   +  F  
Sbjct: 321 VAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDE 380

Query: 144 MEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR 202
           M+K  ++ D  +Y  LI+G   +  L++A +V  EM  + L    VT+  LI G C   +
Sbjct: 381 MQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGK 440

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
           + EA  L  + M    V P+   + +L  GLC  G++  A  +  EM    +E++   Y+
Sbjct: 441 MTEAF-LVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYN 499

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           SLI+ L KAG   +    + +M E G KP+  TY  +I   C+ ++ + A ++L EM DK
Sbjct: 500 SLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDK 559

Query: 323 GCKANPISYNVILGGLCKDGK 343
           G K   ++YNV++ G C  G+
Sbjct: 560 GIKPTIVTYNVLMNGFCMSGR 580



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 131/262 (50%), Gaps = 2/262 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           +V    +F  V+  + R   L  A   FDEM    +      +  L+N     G+L   +
Sbjct: 351 VVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAE 410

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            + Q ME K +  DA +Y +LI G     ++ +A+ V ++MV++R+ P +VT+  L  GL
Sbjct: 411 RVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGL 470

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C +  V  A +L  + M    ++ +   + SLI GLC  G L  A+    +M    ++ D
Sbjct: 471 CKQGDVCAANELLHE-MCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPD 529

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+++I AL ++   +   ++L+EM ++G KP  VTYN L++GFC     E    +L+
Sbjct: 530 VYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLE 589

Query: 318 EMGDKGCKANPISYNVILGGLC 339
            M +K    N  +YN ++   C
Sbjct: 590 WMLEKNIHPNTTTYNSLMKQYC 611



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 126/265 (47%), Gaps = 2/265 (0%)

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           ++H      R+ P  + +  +     +   +  A ++  EM S  +++ +  +N+L+N  
Sbjct: 446 LVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGL 505

Query: 129 LTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
              G L++ M+ +  + E  + PD  +Y  +I     S+ L+ A  +  EM+ + ++PT+
Sbjct: 506 CKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTI 565

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           VT+  L+ G C+  RV+   +L E ++   N+ P+   + SL+K  C    +     + +
Sbjct: 566 VTYNVLMNGFCMSGRVEGGKRLLEWMLE-KNIHPNTTTYNSLMKQYCIEKNMKSTTEIYK 624

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
            M+  ++  +   Y+ LI    KA    E      EM E+G +  + +YNALI    K++
Sbjct: 625 GMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKK 684

Query: 308 DFEAAFTILDEMGDKGCKANPISYN 332
            F  A  + ++M  +   A P  YN
Sbjct: 685 KFTEARRLFEKMRKERLTAEPDVYN 709



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 127/295 (43%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L RA    E +++L +++ D  +    + +  +I  Y +   +  A  + ++M
Sbjct: 393 YTALINGLCRAGELKEAERVLQEME-DKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKM 451

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
               V   V  +  L +     G +    EL   M  K +  +  +YN LI+G   +  L
Sbjct: 452 VQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL 511

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E A +   +M +  L+P + T+ T+I  LC    +D A  L ++++    +KP    +  
Sbjct: 512 EQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLD-KGIKPTIVTYNV 570

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ G C  G +     + E M+   I  +   Y+SL+              I K M  + 
Sbjct: 571 LMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQE 630

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             PN  TYN LI G CK  + + A     EM +KG +    SYN ++  L K  K
Sbjct: 631 VVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKK 685



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 107/204 (52%), Gaps = 12/204 (5%)

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L ++ +  +SP   S N ++  C +   L++A ++F E+ ++       ++  L+  LC 
Sbjct: 214 LLRLRQYGISPSPESCNAVL--CRLP--LDEAVQLFQELPEK----NTCSYNILLKALCT 265

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R+ +A +L +++       PD   +  ++ G C + EL  A+ +  EM    +E++  
Sbjct: 266 AGRIKDAHQLFDEMAS----PPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPV 321

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+S+I+ L   G+ ++   ++++M   G   ++  +  ++SGFC++ D  AA    DEM
Sbjct: 322 AYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEM 381

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             +G  A+ ++Y  ++ GLC+ G+
Sbjct: 382 QKRGLAADGVTYTALINGLCRAGE 405



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 113/235 (48%), Gaps = 2/235 (0%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IM 144
           + ++I    +A  LE+A++   +M    ++  V  + T++       +LDR   L Q ++
Sbjct: 498 YNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEML 557

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
           +K + P   +YN+L++G  +S R+E   ++ + M+++ + P   T+ +L+   C+E  + 
Sbjct: 558 DKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMK 617

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
              ++ + ++    V P+   +  LIKG C    +  AL    EM+     + A  Y++L
Sbjct: 618 STTEIYKGMLS-QEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNAL 676

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           I  L K  +  E   + ++M++         YN  I     E++ E+   + DE+
Sbjct: 677 IRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDEL 731


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 151/304 (49%), Gaps = 3/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  NL+  + +I  L +     E  ++L ++     ++ K I +  +I    +   +E
Sbjct: 552 KGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDK-ITYNTLISGCCKEGKVE 610

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
              ++  EM    ++     +N L++     GKLD    L+ +   + + P+  +Y ++I
Sbjct: 611 EGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMI 670

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G   + ++E+  K+F E++ + L+   V + TLI   C      EA KL +D MR   +
Sbjct: 671 DGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDD-MRSKGI 729

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P    ++SLI G+C +G +  A  + +EM ++ +  +   Y++LI    K G+ ++   
Sbjct: 730 PPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVN 789

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +L+EM      PN +TY  +I G+ K  D + A  +L EM  KG   + ++YNV+  G C
Sbjct: 790 VLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFC 849

Query: 340 KDGK 343
           K+GK
Sbjct: 850 KEGK 853



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 131/251 (52%), Gaps = 5/251 (1%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDAC 153
           +A  LE++  +F+ M    V   V  F+T +N     GK++   +LF  MEK  VSP+  
Sbjct: 291 KANELEKSYWVFETMRQ-GVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVV 349

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKED 212
           +YN LIHG      L++A++  ++MVK  +  TL+T+  LI GL    + +EA   LKE 
Sbjct: 350 TYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKET 409

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           + + +   P+  V+ +LI G C +G L  AL ++ +MV   I  ++   +S+I    K G
Sbjct: 410 LEKGFT--PNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIG 467

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           +  +   IL+EM  RG   N   +  +I   C    FE+A   L EM  +  + N     
Sbjct: 468 QMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLT 527

Query: 333 VILGGLCKDGK 343
            ++GGLCK+GK
Sbjct: 528 TLVGGLCKEGK 538



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 127/242 (52%), Gaps = 1/242 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161
           A+ +F  +++  V  TVK    LL+  +   +L++   +F+ M + VSPD   ++  I+ 
Sbjct: 263 AIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYLFSTAINA 322

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                ++EDA ++F +M K  + P +VT+  LI+GLC    +DEA + KE +++   V  
Sbjct: 323 FCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVK-DGVNA 381

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
               ++ LI GL  + + + A  V +E +      +  +Y++LI    K G   +   I 
Sbjct: 382 TLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIR 441

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            +M  +G  PNSVT N++I GFCK    E A  IL+EM  +G   NP ++  I+  LC +
Sbjct: 442 GDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMN 501

Query: 342 GK 343
            +
Sbjct: 502 SR 503



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 149/330 (45%), Gaps = 43/330 (13%)

Query: 52  LIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111
            +++ L +A   ++   +   ++    + P   +F   I  + +   +E A+Q+F +M  
Sbjct: 284 FLLSSLVKANELEKSYWVFETMRQG--VSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEK 341

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168
             V   V  +N L++     G LD   R KE  ++++  V+    +Y++LI+G +   + 
Sbjct: 342 LGVSPNVVTYNNLIHGLCKHGNLDEAFRFKE--KMVKDGVNATLITYSVLINGLMKLEKF 399

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A  V  E +++   P  V + TLI G C    + +AL+++ D M    + P+     S
Sbjct: 400 NEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGD-MVSKGINPNSVTLNS 458

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I+G C +G++  A  + EEM+     ++ G ++++I  L    R       L+EM  R 
Sbjct: 459 IIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRN 518

Query: 289 CKPNS-----------------------------------VTYNALISGFCKEEDFEAAF 313
            +PN                                    VT NALI G CK  + + A 
Sbjct: 519 MRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAV 578

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +L +M ++G   + I+YN ++ G CK+GK
Sbjct: 579 RLLKKMLERGFVLDKITYNTLISGCCKEGK 608



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 126/259 (48%), Gaps = 2/259 (0%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIM 144
           F  +I +       E AL+   EM   N++       TL+      GK     EL F+++
Sbjct: 491 FTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLL 550

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
           EK    +  + N LIHG   +  +++A ++  +M++R      +T+ TLI G C E +V+
Sbjct: 551 EKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVE 610

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           E  KL+ ++++   ++PD   +  LI G+C +G+L  A+ +  E     +  +   Y  +
Sbjct: 611 EGFKLRGEMVK-QGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVM 669

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           I    KA +  E   +  E+  +  + NSV YN LI  +C+  +   AF + D+M  KG 
Sbjct: 670 IDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGI 729

Query: 325 KANPISYNVILGGLCKDGK 343
                +Y+ ++ G+C  G+
Sbjct: 730 PPTTATYSSLIHGMCNIGR 748



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 117/221 (52%), Gaps = 4/221 (1%)

Query: 93  YGRARL--LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVS 149
           +G  R+  L+ A+ +++E  S ++   V  +  +++      K++  ++LF +++ + + 
Sbjct: 636 HGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLE 695

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
            ++  YN LI     +    +A+K+ D+M  + + PT  T+ +LI+G+C   R+++A K 
Sbjct: 696 LNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDA-KC 754

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
             D MR   + P+   + +LI G C +G++   + V +EM    I  +   Y+ +I    
Sbjct: 755 LIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYS 814

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
           K+G       +L EM  +G  P++VTYN L +GFCKE   E
Sbjct: 815 KSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIE 855



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 108/228 (47%), Gaps = 3/228 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+L+I  + R    DE   + ++ K    +VP    +  +I  Y +A  +E   ++F E+
Sbjct: 631 YNLLIHGMCRIGKLDEAVNLWNECK-SRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTEL 689

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
            + N+++    +NTL+      G      +L   M  K + P   +Y+ LIHG     R+
Sbjct: 690 LTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRM 749

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           EDA  + DEM K  L P +V +  LI G C   ++D+ + + ++ M  Y++ P+   +  
Sbjct: 750 EDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQE-MSSYDIHPNKITYTV 808

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           +I G    G++  A  +  EMV   I  D   Y+ L +   K G+  E
Sbjct: 809 MIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEE 856



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 1/144 (0%)

Query: 70  LHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL 129
           LH       I P    + ++I        +E A  + DEM    +   V  +  L+    
Sbjct: 720 LHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYC 779

Query: 130 TCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
             G++D++  + Q M  Y + P+  +Y ++I G   S  ++ A K+  EMV + + P  V
Sbjct: 780 KLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTV 839

Query: 189 TFGTLIYGLCLELRVDEALKLKED 212
           T+  L  G C E +++E   L ED
Sbjct: 840 TYNVLTNGFCKEGKIEEGKLLAED 863


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 134/273 (49%), Gaps = 19/273 (6%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKY 147
           ++  + +A L+E+A + F+EM        V  +  L++  L   K+    ELF+ M  + 
Sbjct: 524 MVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG 583

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR-----------------LQPTLVTF 190
             P+  +Y+ LI G   + ++E A ++F+ M   +                  +P +V +
Sbjct: 584 CLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIY 643

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
           G L+ G C   RV+EA KL  D M +   +P+  V+ +LI GLC VG+L  A  VK EM 
Sbjct: 644 GALLDGFCKLHRVEEARKLL-DAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMS 702

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
                     YSSLI   FK  R++    +L +M E  C PN V Y  +I G CK    +
Sbjct: 703 EHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTD 762

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            A+ ++  M +KGC+ N ++Y  ++ G  + GK
Sbjct: 763 EAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGK 795



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 142/309 (45%), Gaps = 11/309 (3%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  + + Y  +I+ L  A +F+E    L++++  T  +P  + +  ++      + L R 
Sbjct: 298 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRA-TSCLPNVVTYSTLLCGCLNKKQLGRC 356

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
            ++ + M       + K FN+L++   T G      +L + M K   +P    YNILI G
Sbjct: 357 KRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILI-G 415

Query: 162 CVVSRR-------LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
            +   +       LE A K + EM+   +    +   +    LC   + ++A  +  +++
Sbjct: 416 SICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMI 475

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
                 PD   ++ ++  LC   ++ LA  + EEM R  +  D   Y+ ++ +  KAG  
Sbjct: 476 G-QGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLI 534

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            +      EM+E GC PN VTY ALI  + K +    A  + + M  +GC  N ++Y+ +
Sbjct: 535 EQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSAL 594

Query: 335 LGGLCKDGK 343
           + G CK G+
Sbjct: 595 IDGHCKAGQ 603



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 90/224 (40%), Gaps = 5/224 (2%)

Query: 119 KFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           +F N L+      G     ++EL ++ +    P   +YN LI   + +  L+ A  V  E
Sbjct: 201 EFLNVLVRKYCRSGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLDSASLVHRE 260

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M    L+    T     Y LC   +  EAL L    M   N  PD   +  LI GLC   
Sbjct: 261 MSLANLRMDGFTLRCYAYSLCKVGKWREALTL----METENFVPDTVFYTKLISGLCEAS 316

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
               A+     M       +   YS+L+       +      +L  M   GC P+   +N
Sbjct: 317 LFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFN 376

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           +L+  +C   D   A+ +L +M   G     + YN+++G +C D
Sbjct: 377 SLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGD 420



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 8/189 (4%)

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD--EALKLKEDI 213
           N+L+     S     A +    +   R +P+  T+  LI      L+ D  ++  L    
Sbjct: 204 NVLVRKYCRSGSFSIALEELGRLKDFRFRPSRSTYNCLIQAF---LKADCLDSASLVHRE 260

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M + N++ DG         LC VG+   AL + E    +    D   Y+ LIS L +A  
Sbjct: 261 MSLANLRMDGFTLRCYAYSLCKVGKWREALTLMET---ENFVPDTVFYTKLISGLCEASL 317

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E    L  M+   C PN VTY+ L+ G   ++       +L+ M  +GC  +P  +N 
Sbjct: 318 FEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 377

Query: 334 ILGGLCKDG 342
           ++   C  G
Sbjct: 378 LVHAYCTSG 386



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 107/246 (43%), Gaps = 5/246 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L +    DE  +++ Q+  +    P  + +  +I  +GR   +E  L++
Sbjct: 744 NVVIYTEMIDGLCKVGKTDEAYKLM-QMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLEL 802

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILIHGCVV 164
            + M S  V      +  L++     G LD    L + M++   P  A  Y  +I G   
Sbjct: 803 LERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIEG--F 860

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD-G 223
           ++   ++  + DE+ +    P L  +  L+  L    R++ AL+L E++        D  
Sbjct: 861 NKEFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYS 920

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + SLI+ LC   ++  A  +  EM +  +  +   + SLI  LF+  + +E   +L  
Sbjct: 921 STYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFRNSKISEALLLLDF 980

Query: 284 MKERGC 289
           +    C
Sbjct: 981 ISHMVC 986


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 129/278 (46%), Gaps = 40/278 (14%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL 158
           L+ A+Q+F E+   N       +N LL    T G++    +LF  M     PD  +Y I+
Sbjct: 238 LDEAVQLFQELPEKNTCS----YNILLKALCTAGRIKDAHQLFDEMAS--PPDVVTYGIM 291

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI----- 213
           +HG      LE A K+  EM  R L+   V + ++I  LC E +V +A+++ ED+     
Sbjct: 292 VHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGV 351

Query: 214 -----------------------------MRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
                                        M+   +  DG  + +LI GLC  GEL  A  
Sbjct: 352 VLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAER 411

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           V +EM    +++DA  Y+ LI    K G+  E   +  +M ++   PN VTY AL  G C
Sbjct: 412 VLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLC 471

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           K+ D  AA  +L EM  KG + N  +YN ++ GLCK G
Sbjct: 472 KQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAG 509



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 117/207 (56%), Gaps = 4/207 (1%)

Query: 137 MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           + E  Q+ ++    + CSYNIL+     + R++DA ++FDEM      P +VT+G +++G
Sbjct: 238 LDEAVQLFQELPEKNTCSYNILLKALCTAGRIKDAHQLFDEMAS---PPDVVTYGIMVHG 294

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
            C    ++ A+KL  + M    ++ +   + S+I  LC  G++S A+ V E+MV   + +
Sbjct: 295 YCTLSELETAIKLLSE-MAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVL 353

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           DA ++++++S   + G          EM++RG   + VTY ALI+G C+  + + A  +L
Sbjct: 354 DAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVL 413

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
            EM DKG   + ++Y V++ G CK GK
Sbjct: 414 QEMEDKGLDVDAVTYTVLIDGYCKVGK 440



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 130/261 (49%), Gaps = 2/261 (0%)

Query: 84  IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQI 143
           + + +VI        +  A+++ ++M    V +    F T+++     G L   +  F  
Sbjct: 321 VAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDE 380

Query: 144 MEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR 202
           M+K  ++ D  +Y  LI+G   +  L++A +V  EM  + L    VT+  LI G C   +
Sbjct: 381 MQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGK 440

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
           + EA  L  + M    V P+   + +L  GLC  G++  A  +  EM    +E++   Y+
Sbjct: 441 MTEAF-LVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYN 499

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           SLI+ L KAG   +    + +M E G KP+  TY  +I   C+ ++ + A ++L EM DK
Sbjct: 500 SLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDK 559

Query: 323 GCKANPISYNVILGGLCKDGK 343
           G K   ++YNV++ G C  G+
Sbjct: 560 GIKPTIVTYNVLMNGFCMSGR 580



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 131/262 (50%), Gaps = 2/262 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           +V    +F  V+  + R   L  A   FDEM    +      +  L+N     G+L   +
Sbjct: 351 VVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAE 410

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            + Q ME K +  DA +Y +LI G     ++ +A+ V ++MV++R+ P +VT+  L  GL
Sbjct: 411 RVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGL 470

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C +  V  A +L  + M    ++ +   + SLI GLC  G L  A+    +M    ++ D
Sbjct: 471 CKQGDVCAANELLHE-MCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPD 529

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+++I AL ++   +   ++L+EM ++G KP  VTYN L++GFC     E    +L+
Sbjct: 530 VYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLE 589

Query: 318 EMGDKGCKANPISYNVILGGLC 339
            M +K    N  +YN ++   C
Sbjct: 590 WMLEKNIHPNTTTYNSLMKQYC 611



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 126/265 (47%), Gaps = 2/265 (0%)

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           ++H      R+ P  + +  +     +   +  A ++  EM S  +++ +  +N+L+N  
Sbjct: 446 LVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGL 505

Query: 129 LTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
              G L++ M+ +  + E  + PD  +Y  +I     S+ L+ A  +  EM+ + ++PT+
Sbjct: 506 CKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTI 565

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           VT+  L+ G C+  RV+   +L E ++   N+ P+   + SL+K  C    +     + +
Sbjct: 566 VTYNVLMNGFCMSGRVEGGKRLLEWMLE-KNIHPNTTTYNSLMKQYCIEKNMKSTTEIYK 624

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
            M+  ++  +   Y+ LI    KA    E      EM E+G +  + +YNALI    K++
Sbjct: 625 GMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKK 684

Query: 308 DFEAAFTILDEMGDKGCKANPISYN 332
            F  A  + ++M  +   A P  YN
Sbjct: 685 KFTEARRLFEKMRKERLTAEPDVYN 709



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 107/204 (52%), Gaps = 12/204 (5%)

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L ++ +  +SP   S N ++  C +   L++A ++F E+ ++       ++  L+  LC 
Sbjct: 214 LLRLRQYGISPSPESCNAVL--CRLP--LDEAVQLFQELPEK----NTCSYNILLKALCT 265

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R+ +A +L +++       PD   +  ++ G C + EL  A+ +  EM    +E++  
Sbjct: 266 AGRIKDAHQLFDEMAS----PPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPV 321

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+S+I+ L   G+ ++   ++++M   G   ++  +  ++SGFC++ D  AA    DEM
Sbjct: 322 AYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEM 381

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             +G  A+ ++Y  ++ GLC+ G+
Sbjct: 382 QKRGLAADGVTYTALINGLCRAGE 405



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 113/235 (48%), Gaps = 2/235 (0%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IM 144
           + ++I    +A  LE+A++   +M    ++  V  + T++       +LDR   L Q ++
Sbjct: 498 YNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEML 557

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
           +K + P   +YN+L++G  +S R+E   ++ + M+++ + P   T+ +L+   C+E  + 
Sbjct: 558 DKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMK 617

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
              ++ + ++    V P+   +  LIKG C    +  AL    EM+     + A  Y++L
Sbjct: 618 STTEIYKGMLS-QEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNAL 676

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           I  L K  +  E   + ++M++         YN  I     E++ E+   + DE+
Sbjct: 677 IRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDEL 731


>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rehmannii]
          Length = 420

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 139/258 (53%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++  Y R   L+   ++   M +  VQ  V  ++ L+N       +D   EL
Sbjct: 164 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANEL 223

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K + P+  ++  LI G   + R++ A +++ +M+ + L P J+T+ TL+YGLC 
Sbjct: 224 FDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCK 283

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  +++A  L ++ M    +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 284 KGDLNQAHGLIDE-MXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDV 342

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP++ TY  +I+ FCK+ D      +L EM
Sbjct: 343 AYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEM 402

Query: 320 GDKGCKANPISYNVILGG 337
              G     ++YNV++ G
Sbjct: 403 QRNGHVPXVVTYNVLMNG 420



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 127/239 (53%), Gaps = 2/239 (0%)

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV 163
           +FD ++ + ++ +V  +NTL+N  +  G LD    L   M    V PD  +Y++LI+G  
Sbjct: 153 VFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLC 212

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
               ++DA ++FDEM+ + L P  VTF TLI G C   RVD A+++ + ++    + PD 
Sbjct: 213 KESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QXLLPDJ 271

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +L+ GLC  G+L+ A G+ +EM    ++ D   Y++LI    K G  +      K 
Sbjct: 272 ITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKR 331

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           M +   + + V Y ALISG C+E     A  +L EM   G K +  +Y +I+   CK G
Sbjct: 332 MIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKKG 390



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 130/250 (52%), Gaps = 2/250 (0%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDAC 153
           + R  +     ++E+       ++ FFN L++     G +     +F  + K+ + P   
Sbjct: 108 KLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVV 167

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           SYN L++G +    L++ +++   M    +QP + T+  LI GLC E  +D+A +L ++ 
Sbjct: 168 SYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDE- 226

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M V  + P+   F +LI G C  G + LA+ + ++M+   +  D   Y++L+  L K G 
Sbjct: 227 MLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGD 286

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            N+   ++ EM  +G KP+  TY  LI G CKE D +AAF     M  +  + + ++Y  
Sbjct: 287 LNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTA 346

Query: 334 ILGGLCKDGK 343
           ++ GLC++G+
Sbjct: 347 LISGLCQEGR 356


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 154/299 (51%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I     A  +D+ + +  ++  D  + P  + F  +I    +   +  A ++
Sbjct: 271 DVISYSTLIHGFCCAGKWDQSKHLFDEMV-DQGVQPDMVTFSVLIDTLCKEGKVTEAKKL 329

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            + M    +   +  +N+L++     G L+  +ELF  M  K + PD  SY  LI+G   
Sbjct: 330 LEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCK 389

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + ++++A  +++EM++    P + T+GTL+ GL  + +V +A KL   +M+ Y V  + Q
Sbjct: 390 TWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLF-GVMKTYGVSANSQ 448

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++   + GLC    L  A+ +  E+     +++   YS LI  L KAG+      + +++
Sbjct: 449 IYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKL 508

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + G +P+ VTYN +I GFCK    + A  + ++M + GC  + I+YN +L G C+  K
Sbjct: 509 SQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNK 567



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 161/368 (43%), Gaps = 73/368 (19%)

Query: 47  LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMF 106
           ++ Y +II  L +    DE +++  ++K    ++P  I +  +I  +  A   +++  +F
Sbjct: 237 VITYSIIIDGLCKVGREDEAKELFEEMKAQG-MIPDVISYSTLIHGFCCAGKWDQSKHLF 295

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM---------------------- 144
           DEM    VQ  +  F+ L++     GK+   K+L ++M                      
Sbjct: 296 DEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMV 355

Query: 145 --------------EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
                          K + PD  SY  LI+G   + ++++A  +++EM++    P + T+
Sbjct: 356 GDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTY 415

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF------------------------ 226
           GTL+ GL  + +V +A KL   +M+ Y V  + Q++                        
Sbjct: 416 GTLLKGLFQKGKVGDAKKLF-GVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELK 474

Query: 227 -----------ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
                      + LI GLC  G+L  A  + E++ ++ ++ D   Y+ +I    K G+ +
Sbjct: 475 SYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVD 534

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
               + ++M+E GC P+ + YN L+ GFC+    E    +L +M  K    N  S  +++
Sbjct: 535 NANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVV 594

Query: 336 GGLCKDGK 343
             LCKD K
Sbjct: 595 DMLCKDEK 602



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 112/218 (51%), Gaps = 8/218 (3%)

Query: 133 KLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ------P 185
           ++     LF  M+K   +P+A +Y  LI G   +  +  A K+  EM+    Q      P
Sbjct: 176 RISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKP 235

Query: 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
            ++T+  +I GLC   R DEA +L E+ M+   + PD   +++LI G C  G+   +  +
Sbjct: 236 GVITYSIIIDGLCKVGREDEAKELFEE-MKAQGMIPDVISYSTLIHGFCCAGKWDQSKHL 294

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
            +EMV   ++ D   +S LI  L K G+  E   +L+ M +RG  PN +TYN+LI GFC 
Sbjct: 295 FDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCM 354

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             D  +A  +   M  KG + + ISY  ++ G CK  K
Sbjct: 355 VGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWK 392



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 126/271 (46%), Gaps = 8/271 (2%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK----LD 135
           +P  + +  +I        +  A ++F  M           + TL+      G     L 
Sbjct: 158 IPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALK 217

Query: 136 RMKELFQIMEKY---VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
             KE+     +Y     P   +Y+I+I G     R ++A ++F+EM  + + P ++++ T
Sbjct: 218 LHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYST 277

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           LI+G C   + D++  L ++++    V+PD   F+ LI  LC  G+++ A  + E M++ 
Sbjct: 278 LIHGFCCAGKWDQSKHLFDEMVD-QGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQR 336

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
            I  +   Y+SLI      G  N    +   M  +G +P+ ++Y  LI+G+CK    + A
Sbjct: 337 GIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEA 396

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             + +EM   G   N  +Y  +L GL + GK
Sbjct: 397 MNLYNEMLQVGKSPNVTTYGTLLKGLFQKGK 427



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 7/179 (3%)

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           A+  FD M++    P + +F  L+ GL       +   L  + MR+  + PD    + L 
Sbjct: 75  AFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNE-MRLAGLSPDLFTLSILA 133

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
             LC V  +S AL     ++R     +   Y++LI  L    R +E   +   M++ GC 
Sbjct: 134 NCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCT 193

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKG------CKANPISYNVILGGLCKDGK 343
           PN+VTY  LI G C+  +   A  +  EM +        CK   I+Y++I+ GLCK G+
Sbjct: 194 PNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGR 252


>gi|125539402|gb|EAY85797.1| hypothetical protein OsI_07159 [Oryza sativa Indica Group]
          Length = 506

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 124/238 (52%), Gaps = 39/238 (16%)

Query: 145 EKYV-SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR---LQPTLVTFGTLIYGLCLE 200
            KY+  P+ C YNILI   V    L  A++VFDEM       ++P+LVT+ TLI GLC  
Sbjct: 184 SKYLPQPNTCIYNILIKYYVKKGDLGTAFQVFDEMRNMNCADVRPSLVTYSTLIGGLCRG 243

Query: 201 LRVDEALKLKEDIMRVYNVKPD--------------GQV--------------------- 225
            ++ EA +L ED++    + PD              GQV                     
Sbjct: 244 AQMKEAFELFEDMIEKDRIVPDQLTYNLLIGGFCRLGQVEKAQSIFGFMRKNECEPNAFN 303

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           +A+LI G C  GE+  A GV EEM+R  ++ DA  Y+SL+  L + G  +E   +++EM 
Sbjct: 304 YATLINGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGINLVQEMW 363

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           ++GCK + VTYN L+ G CK+     A T+L+++  +G + N  SY +++  LC  G+
Sbjct: 364 QKGCKADVVTYNLLLEGLCKDRRIAEAVTLLEKLPSEGVQLNVASYRIVMNCLCSCGE 421



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 137/283 (48%), Gaps = 10/283 (3%)

Query: 45  YNLL-HYDLIITKLGRA-KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           YN+L  Y +    LG A ++FDEM+ +     +   + P  + +  +IG   R   ++ A
Sbjct: 195 YNILIKYYVKKGDLGTAFQVFDEMRNM-----NCADVRPSLVTYSTLIGGLCRGAQMKEA 249

Query: 103 LQMFDEMSSFNVQMTVKF-FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIH 160
            ++F++M   +  +  +  +N L+      G++++ + +F  M K    P+A +Y  LI+
Sbjct: 250 FELFEDMIEKDRIVPDQLTYNLLIGGFCRLGQVEKAQSIFGFMRKNECEPNAFNYATLIN 309

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G      +E A  VF+EM++  +QP  V++ +L+  LC    VDE + L +++ +    K
Sbjct: 310 GHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGINLVQEMWQ-KGCK 368

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
            D   +  L++GLC    ++ A+ + E++  + ++++   Y  +++ L   G   +   +
Sbjct: 369 ADVVTYNLLLEGLCKDRRIAEAVTLLEKLPSEGVQLNVASYRIVMNCLCSCGEMEKAAGL 428

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           L  M  RG  P+    N L+ G C       A   L  + D G
Sbjct: 429 LGMMLGRGFVPHYAASNMLLIGLCDVGRVSDATVTLYGLVDTG 471



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 129/282 (45%), Gaps = 4/282 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R +L+ Y  +I  L R     E  ++   +    RIVP ++ +  +IG + R   +E+A 
Sbjct: 227 RPSLVTYSTLIGGLCRGAQMKEAFELFEDMIEKDRIVPDQLTYNLLIGGFCRLGQVEKAQ 286

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGC 162
            +F  M     +     + TL+N     G+++  + +F +++   V PDA SY  L+ GC
Sbjct: 287 SIFGFMRKNECEPNAFNYATLINGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLV-GC 345

Query: 163 VVSR-RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
           +     +++   +  EM ++  +  +VT+  L+ GLC + R+ EA+ L E +     V+ 
Sbjct: 346 LCRHGNVDEGINLVQEMWQKGCKADVVTYNLLLEGLCKDRRIAEAVTLLEKLPS-EGVQL 404

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   +  ++  LC+ GE+  A G+   M+           + L+  L   GR ++    L
Sbjct: 405 NVASYRIVMNCLCSCGEMEKAAGLLGMMLGRGFVPHYAASNMLLIGLCDVGRVSDATVTL 464

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
             + + G  P +  +  LI    +E     +  +LD +  +G
Sbjct: 465 YGLVDTGFMPEARCWARLIESVFRERKLRRSIELLDVLIAEG 506


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 138/264 (52%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMKE 139
           P    +  +I  + +   ++ A ++ D M S +       +N ++    + GKLD  +K 
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L Q++     P   +Y ILI   ++   +++A K+ DEM+ R L+P + T+ T+I G+C 
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E  VD A ++  + + +   +PD   +  L++ L   G+      +  +M  +K + +  
Sbjct: 276 EGMVDRAFEMVRN-LELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YS LI+ L + G+  E   +LK MKE+G  P++ +Y+ LI+ FC+E   + A   L+ M
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 394

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
              GC  + ++YN +L  LCK+GK
Sbjct: 395 ISDGCLPDIVNYNTVLATLCKNGK 418



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 151/303 (49%), Gaps = 3/303 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  + + Y+++I  L      D   ++L+QL  D    P  I +  +I        ++
Sbjct: 187 KDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDN-CQPTVITYTILIEATMLEGGVD 245

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
            AL++ DEM S  ++  +  +NT++      G +DR  E+ + +E K   PD  SYNIL+
Sbjct: 246 EALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILL 305

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
              +   + E+  K+  +M   +  P +VT+  LI  LC + +++EA+ L + +M+   +
Sbjct: 306 RALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLK-LMKEKGL 364

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   +  LI   C  G L +A+   E M+ D    D   Y+++++ L K G+ ++   
Sbjct: 365 TPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALE 424

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           I  ++ E GC PNS +YN + S      D   A  ++ EM   G   + I+YN ++  LC
Sbjct: 425 IFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLC 484

Query: 340 KDG 342
           ++G
Sbjct: 485 REG 487



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 109/210 (51%), Gaps = 2/210 (0%)

Query: 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           ++ +  L  ++ K  +PD      LI G    R +  A +V  E++++  QP +  +  L
Sbjct: 106 IESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVM-EILEKFGQPDVFAYNAL 164

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G C   R+D+A ++  D MR  +  PD   +  +I  LC+ G+L LAL V  +++ D 
Sbjct: 165 INGFCKMNRIDDATRVL-DRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDN 223

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
            +     Y+ LI A    G  +E   ++ EM  RG KP+  TYN +I G CKE   + AF
Sbjct: 224 CQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAF 283

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ++  +  KGC+ + ISYN++L  L   GK
Sbjct: 284 EMVRNLELKGCEPDVISYNILLRALLNQGK 313



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 150/307 (48%), Gaps = 14/307 (4%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           +  LKP   ++  Y+ II  + +  M D   +++  L  + +    ++I  N++    RA
Sbjct: 256 SRGLKP---DMFTYNTIIRGMCKEGMVDRAFEMVRNL--ELKGCEPDVISYNILL---RA 307

Query: 97  RL----LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPD 151
            L     E   ++  +M S      V  ++ L+      GK++    L ++M EK ++PD
Sbjct: 308 LLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPD 367

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
           A SY+ LI       RL+ A +  + M+     P +V + T++  LC   + D+AL++  
Sbjct: 368 AYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFG 427

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            +  V    P+   + ++   L + G+   AL +  EM+ + I+ D   Y+S+IS L + 
Sbjct: 428 KLGEV-GCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCRE 486

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G  +E   +L +M+     P+ VTYN ++ GFCK    E A  +L+ M   GC+ N  +Y
Sbjct: 487 GMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTY 546

Query: 332 NVILGGL 338
            V++ G+
Sbjct: 547 TVLIEGI 553


>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Glycine max]
          Length = 564

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 132/256 (51%), Gaps = 3/256 (1%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145
           +  ++   G+ R  + A  + D M S  V++TV  F+ L+   +  G        F  ME
Sbjct: 181 YNEMLDLAGKLRQFDLAWHVIDLMKSRGVEITVHTFSALVRRYVRAGLAAEAVHAFNRME 240

Query: 146 KY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
            Y  +PD  +++I+I      RR  +A   FD + K R +P +V + +L++G C    + 
Sbjct: 241 DYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSL-KHRFEPDVVVYTSLVHGWCRAGDIS 299

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           +A ++  D M++  +KP+   ++ +I  LC  G+++ A  V  EM+    + +A  ++SL
Sbjct: 300 KAEEVFSD-MKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSL 358

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           +    KAGR  +   +  +MK  GC  ++++YN +I   C++E+ E A  IL+ M  KG 
Sbjct: 359 MRVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFIIESHCRDENLEEAAKILNLMVKKGV 418

Query: 325 KANPISYNVILGGLCK 340
             N  ++N I G + K
Sbjct: 419 APNASTFNFIFGCIAK 434



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 148/300 (49%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ + ++I+ L + +  +E Q     LKH  R  P  +++ +++  + RA  + +A ++
Sbjct: 247 DMVAFSIVISSLCKKRRANEAQSFFDSLKH--RFEPDVVVYTSLVHGWCRAGDISKAEEV 304

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           F +M    ++  V  ++ +++    CG++ R  ++F ++++    P+A ++N L+   V 
Sbjct: 305 FSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVK 364

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R E   KV+++M +       +++  +I   C +  ++EA K+  ++M    V P+  
Sbjct: 365 AGRTEKVLKVYNQMKRLGCPADTISYNFIIESHCRDENLEEAAKIL-NLMVKKGVAPNAS 423

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F  +   +  + +++ A  +   M     + +   Y+ L+    ++   +    + KEM
Sbjct: 424 TFNFIFGCIAKLHDVNGAHRMYARMKELNCQPNTLTYNILMRMFAESRSTDMVLKMKKEM 483

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC-KANPISYNVILGGLCKDGK 343
            E   +PN  TY  LIS FC  + +  A+ ++ EM ++ C + N   Y  +L  L K G+
Sbjct: 484 DESQVEPNVNTYRILISMFCDMKHWNNAYKLMMEMVEEKCLRPNLSVYETVLELLRKAGQ 543



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 12/183 (6%)

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLI-----YGLCLELRVDEALKLKEDIMRVYNVK 220
           R+ + AW V D M  R ++ T+ TF  L+      GL  E     A    ED    Y   
Sbjct: 192 RQFDLAWHVIDLMKSRGVEITVHTFSALVRRYVRAGLAAE--AVHAFNRMED----YGCT 245

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   F+ +I  LC     + A    + + + + E D  +Y+SL+    +AG  ++   +
Sbjct: 246 PDMVAFSIVISSLCKKRRANEAQSFFDSL-KHRFEPDVVVYTSLVHGWCRAGDISKAEEV 304

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             +MK  G KPN  TY+ +I   C+      A  +  EM D GC  N +++N ++    K
Sbjct: 305 FSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVK 364

Query: 341 DGK 343
            G+
Sbjct: 365 AGR 367


>gi|359489475|ref|XP_002267721.2| PREDICTED: conserved oligomeric Golgi complex subunit 4-like [Vitis
           vinifera]
          Length = 1105

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/324 (30%), Positives = 162/324 (50%), Gaps = 22/324 (6%)

Query: 1   KPT---SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKL 57
           KP+   S  R+  L   Q DP LA ++F   +  PN         F+++   + ++I KL
Sbjct: 38  KPSPIGSPSRVQKLIASQSDPLLAKEIFDLASLQPN---------FKHSYSSFHILILKL 88

Query: 58  GRAKMFDEMQQILHQLKHDT-RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQM 116
           G A+ F  MQ +L +LK +   I P   +F ++I  YG A L ++AL+ F  M  F+ + 
Sbjct: 89  GWARQFSLMQDLLMRLKSEQYSINPS--LFSDIIEIYGEANLPDQALKTFHSMLQFHSKP 146

Query: 117 TVKFFNTLLNPKLTCGKLDRMK-ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKV 174
             K  N LL   ++     R   +LF+   +Y VSPD  SYNIL+     +  L  A+ +
Sbjct: 147 LPKHLNRLLQLLVSHRNYIRPAFDLFKSAHRYGVSPDTKSYNILMSAFCFNGDLSIAYTL 206

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
           F++M KR + P + ++  L+ GLC + +V+ A+ L ED++    V PD    A+L+ GLC
Sbjct: 207 FNQMFKRDVAPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGYV-PD----ATLVSGLC 261

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
             G    A    EEM+     +   ++ +LI+     G+  E   +L+EM   G  P++ 
Sbjct: 262 DQGLYDEAKNYVEEMLSKGFSLHFSVFHALINGFCNVGKLEEACEVLREMLRHGEAPHTE 321

Query: 295 TYNALISGFCKEEDFEAAFTILDE 318
           T+ A+I   C+ +       I DE
Sbjct: 322 TWVAIIPRICEVDKLVRMENIFDE 345



 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 34/65 (52%)

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + K     G  P++ +YN L+S FC   D   A+T+ ++M  +    +  SY +++ GLC
Sbjct: 171 LFKSAHRYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRILMQGLC 230

Query: 340 KDGKC 344
           +  + 
Sbjct: 231 RKSQV 235


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 151/301 (50%), Gaps = 12/301 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHD--TRIVPKEIIFCN-VIGFYGRARLLERALQMF 106
           Y  +I+ L +    DE    L+Q+  +   R V  +++  N VI     +  LE AL  F
Sbjct: 184 YTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYF 243

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF----QIMEKYVSPDACSYNILIHGC 162
           DE+   ++ +T   FN L+     C K +R +E      ++ E+   P   +Y  L+ G 
Sbjct: 244 DELDD-SLDLTHFTFNPLVAA--LC-KAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGF 299

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
           +   RL++A     E V+R   P  VT+ ++I GLC   RV+E  +   + MR    +PD
Sbjct: 300 LKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHE-MRNRGYEPD 358

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              +A+LI G      +  A  V  +M++    +    Y+ ++  L KAGR  E  A   
Sbjct: 359 AVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFL 418

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            M+ERGC    VTY+AL+ GFC E +  AA  +   M D+GC+ N +SYN+I+ GLC+ G
Sbjct: 419 AMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAG 478

Query: 343 K 343
           K
Sbjct: 479 K 479



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 7/225 (3%)

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
             LLN     G+LDR   L   M    SPD  ++ ++I+G    +RL++A+ V +  V+ 
Sbjct: 13  TALLNGLCKTGQLDRAMLLLDEMP--CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRA 70

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
             +P  VT+   I GLC   RVD+A +L +  M      P    + +L+ GL   G L  
Sbjct: 71  GCEPDYVTYNVFIDGLCKAERVDDAFQLLKK-MDEKKCLPTTVTYTALVDGLLKAGRLDE 129

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           A+ + E+MV          Y+ +I  L KAGR  E   I  +M   GC+P++  Y ALIS
Sbjct: 130 AMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIS 189

Query: 302 GFCKEEDFEAAFTILDEMGDKGC----KANPISYNVILGGLCKDG 342
           G  K    + A   L++M + GC    + + + +N+++  LC  G
Sbjct: 190 GLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASG 234



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 147/299 (49%), Gaps = 11/299 (3%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARL 98
           + +  + + Y  +I    +AKM  +  ++  Q+     +V    +  N+I  G     R+
Sbjct: 353 RGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVST--VTYNIILDGLCKAGRV 410

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNI 157
            E A   F  M       TV  ++ L++   + G +    ELF+ ++++   P+  SYNI
Sbjct: 411 AE-AYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNI 469

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL-RVDEALKLKEDIMRV 216
           +I G   + +L  A+  F+++++RRL P + TF + ++GLC  L  V + ++L E  M  
Sbjct: 470 IIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFES-MVS 528

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
               P+   ++ L+ G+C  G L + L +  EMV   +  D  ++++LI  L  AGR +E
Sbjct: 529 QGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDE 588

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
              + +E+ ER   P++ +Y +L+    + E  E A  +   M  +GC   P  Y++ +
Sbjct: 589 ALEVFREL-ERRSAPDAWSYWSLLDALSRCERMEEARLLSFHMKLQGCA--PRHYDLTV 644



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 97/201 (48%), Gaps = 6/201 (2%)

Query: 143 IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR 202
           I  K V    C+   L++G   + +L+ A  + DEM      P +V F  +I GLC E R
Sbjct: 2   IDRKLVDTRVCT--ALLNGLCKTGQLDRAMLLLDEM---PCSPDMVAFTVVINGLCREKR 56

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
           +DEA  + E  +R    +PD   +   I GLC    +  A  + ++M   K       Y+
Sbjct: 57  LDEAFSVLERAVRA-GCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYT 115

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           +L+  L KAGR +E  AIL++M E+G  P   TY  +I G  K    E A  I  +M   
Sbjct: 116 ALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGN 175

Query: 323 GCKANPISYNVILGGLCKDGK 343
           GC+ +   Y  ++ GL K GK
Sbjct: 176 GCRPDAFVYTALISGLAKIGK 196



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 124/279 (44%), Gaps = 11/279 (3%)

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
           FDE+   L  L H T        F  ++    +A   E A+    +MS      T+  + 
Sbjct: 243 FDELDDSL-DLTHFT--------FNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYT 293

Query: 123 TLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
           +L++  L  G+LD  + +L + +E+   PDA +Y  +I G     R+E+  + F EM  R
Sbjct: 294 SLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNR 353

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
             +P  VT+  LI G      + +A ++   +++   V      +  ++ GLC  G ++ 
Sbjct: 354 GYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVST-VTYNIILDGLCKAGRVAE 412

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           A      M           YS+L+      G  +    + + M +RGC+PN V+YN +I 
Sbjct: 413 AYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIR 472

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           G C+      A+   +++  +    +  ++N  L GLC+
Sbjct: 473 GLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQ 511



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 84/166 (50%), Gaps = 5/166 (3%)

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M+ R+L  T V    L+ GLC   ++D A+ L +++       PD   F  +I GLC   
Sbjct: 1   MIDRKLVDTRVC-TALLNGLCKTGQLDRAMLLLDEM----PCSPDMVAFTVVINGLCREK 55

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
            L  A  V E  VR   E D   Y+  I  L KA R ++   +LK+M E+ C P +VTY 
Sbjct: 56  RLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYT 115

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           AL+ G  K    + A  IL++M +KG      +Y V++ GL K G+
Sbjct: 116 ALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGR 161



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 134/292 (45%), Gaps = 11/292 (3%)

Query: 56  KLGRAKMFDEMQQILHQLKHDTR--IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFN 113
           KLGR      + + L QLK       +P  + + ++I    +   +E   + F EM +  
Sbjct: 301 KLGR------LDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRG 354

Query: 114 VQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAW 172
            +     +  L++  +    + +   ++ Q+++        +YNI++ G   + R+ +A+
Sbjct: 355 YEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAY 414

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
             F  M +R    T+VT+  L+ G C E  V  A++L   ++     +P+   +  +I+G
Sbjct: 415 ATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLD-RGCEPNLVSYNIIIRG 473

Query: 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF-KAGRKNEFPAILKEMKERGCKP 291
           LC  G+L+ A    E++++ ++  D   ++S +  L  +     +   + + M  +G  P
Sbjct: 474 LCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSP 533

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           N  +Y+ L+ G C+    E    I  EM  +G   + + +N ++  LC  G+
Sbjct: 534 NLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGR 585


>gi|359496226|ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial-like [Vitis vinifera]
          Length = 382

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 155/310 (50%), Gaps = 4/310 (1%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           ++  L  FR     Y+  + +L  AK F  +++IL + K   + + +E     +I  YG+
Sbjct: 48  KSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQKK-YKDISREGFAVRLITLYGK 106

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PDAC 153
           + + + A ++FDEM     + +V  FN LL   +   K D+++  F  +   +S  PD  
Sbjct: 107 SGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVNSKKFDKVEGFFSELPSKLSVEPDLV 166

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           SYNI+I+G      ++ A  + DEM K+ L+P L+TF TL+ G     R  +  K+    
Sbjct: 167 SYNIVINGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGEKI-WGR 225

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M   N+ PD + + + + GL +   +   +G+ EEM    I+ D   +++LI      G+
Sbjct: 226 MEKKNILPDIRSYNAKLVGLVSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCNDGK 285

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +E      +M+E  C P+ +T+  L+  +C++  F+ AF +  E+ ++ C  + +    
Sbjct: 286 VDEATNWYGKMRENDCLPDKLTFATLVPLYCEKGSFDQAFELCKEIFNRKCLVDEVLLQN 345

Query: 334 ILGGLCKDGK 343
            + GL K GK
Sbjct: 346 AVDGLVKGGK 355



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 123/251 (49%), Gaps = 2/251 (0%)

Query: 95  RARLLERALQMFDEMSSFN-VQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC 153
           R R L+R +Q F + S  +  +     +   +    +  +   ++E+ +  +KY      
Sbjct: 35  RERNLKRLVQKFKKSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQKKYKDISRE 94

Query: 154 SYNI-LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            + + LI     S   + A+KVFDEM  ++ + ++++F  L+       + D+      +
Sbjct: 95  GFAVRLITLYGKSGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVNSKKFDKVEGFFSE 154

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           +    +V+PD   +  +I GLC +G +  A+G+ +EM +  +E D   +++L++  + +G
Sbjct: 155 LPSKLSVEPDLVSYNIVINGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSG 214

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           R  +   I   M+++   P+  +YNA + G   E+       +++EM  KG K +  S+N
Sbjct: 215 RFLDGEKIWGRMEKKNILPDIRSYNAKLVGLVSEKRMLEGIGLVEEMQTKGIKPDGYSFN 274

Query: 333 VILGGLCKDGK 343
            ++ G C DGK
Sbjct: 275 ALIKGFCNDGK 285


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 157/305 (51%), Gaps = 6/305 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP   NL+ ++ ++  + +A   ++ +++  ++  +  + P  + +  ++G Y +A   
Sbjct: 256 LKP---NLVTFNSMVNGMCKAGKMEDARKVFDEMVREG-LAPDGVSYNTLVGGYCKAGCS 311

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNIL 158
             AL +F EM+   +   V  F +L++     G L+R   L  Q+ E+ +  +  ++  L
Sbjct: 312 HEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTAL 371

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G      L+DA      M + R++P++V +  LI G C+  R+DEA +L  + M    
Sbjct: 372 IDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHE-MEAKG 430

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           +KPD   ++++I   C   +   A  + ++M+   +  DA  YSSLI  L    R ++  
Sbjct: 431 LKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAH 490

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            + K M + G +P+  TY +LI G CKE + E+A ++ D+M   G   + ++Y+V++ GL
Sbjct: 491 VLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGL 550

Query: 339 CKDGK 343
            K  +
Sbjct: 551 SKSAR 555



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 154/297 (51%), Gaps = 3/297 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y++++  L       E   IL  ++      P  + +  ++  + RA  ++ A ++
Sbjct: 189 NVYTYNILVRALCGRGHRKEALSILRDMR-GAGCGPNVVTYNTLVAAFFRAGEVDGAERL 247

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
              M    ++  +  FN+++N     GK++  +++F +++ + ++PD  SYN L+ G   
Sbjct: 248 VGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCK 307

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +    +A  VF EM ++ + P +VTF +LI+ +C    ++ A+ L    MR   ++ +  
Sbjct: 308 AGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQ-MRERGLQMNEV 366

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G L  AL     M + +I+     Y++LI+     GR +E   +L EM
Sbjct: 367 TFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEM 426

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           + +G KP+ VTY+ +IS +CK  D  +AF +  +M +KG   + I+Y+ ++  LC +
Sbjct: 427 EAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGE 483



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 130/251 (51%), Gaps = 12/251 (4%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----VSPDACS 154
           L  A + FD M S  V   V  +N L+  +  CG+  R KE   I+         P+  +
Sbjct: 171 LTSARRFFDSMLSDGVAPNVYTYNILV--RALCGRGHR-KEALSILRDMRGAGCGPNVVT 227

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YN L+     +  ++ A ++   M +  L+P LVTF +++ G+C   ++++A K+ ++++
Sbjct: 228 YNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMV 287

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           R   + PDG  + +L+ G C  G    AL V  EM +  I  D   ++SLI  + KAG  
Sbjct: 288 R-EGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNL 346

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP--ISYN 332
                ++++M+ERG + N VT+ ALI GFCK+   + A  +L   G K C+  P  + YN
Sbjct: 347 ERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDA--LLAVRGMKQCRIKPSVVCYN 404

Query: 333 VILGGLCKDGK 343
            ++ G C  G+
Sbjct: 405 ALINGYCMVGR 415



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 133/276 (48%), Gaps = 17/276 (6%)

Query: 83  EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ 142
           E+ F  +I  + +   L+ AL     M    ++ +V  +N L+N     G++D  +EL  
Sbjct: 365 EVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLH 424

Query: 143 IME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
            ME K + PD  +Y+ +I     +     A+++  +M+++ + P  +T+ +LI  LC E 
Sbjct: 425 EMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEK 484

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
           R+ +A  L ++++++  ++PD   + SLI G C  G +  AL + ++MV+  +  D   Y
Sbjct: 485 RLSDAHVLFKNMIKL-GLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTY 543

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN---------------ALISGFCKE 306
           S LI+ L K+ R  E   +L ++      P +  Y+               AL+ GFC +
Sbjct: 544 SVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMK 603

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
                A  +   M D+    +   Y+V++ G C+ G
Sbjct: 604 GLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAG 639



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 142/329 (43%), Gaps = 42/329 (12%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I         DE +++LH+++    + P  + +  +I  Y +      A ++  +M
Sbjct: 403 YNALINGYCMVGRMDEARELLHEMEAKG-LKPDVVTYSTIISAYCKNCDTHSAFELNQQM 461

Query: 110 SSFNVQMTVKFFNTLLNPKLTCG--KLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSR 166
               V      +++L+  ++ CG  +L     LF+ M K  + PD  +Y  LI G     
Sbjct: 462 LEKGVLPDAITYSSLI--RVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEG 519

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL--------------KED 212
            +E A  + D+MVK  + P +VT+  LI GL    R  EA +L              K D
Sbjct: 520 NVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYD 579

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            +     K + +   +L+KG C  G ++ A  V + M+     +D  +YS LI    +AG
Sbjct: 580 ALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAG 639

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISG-------------------FCKEEDFEAAF 313
              +  +  K+M + G  PNS +  +LI G                   +C   D EA+ 
Sbjct: 640 NVMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNYCSLADAEASK 699

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDG 342
            ++D   ++G   N  +   +L G+ KDG
Sbjct: 700 ALIDLNLNEG---NVDAVLDVLHGMAKDG 725



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 138/317 (43%), Gaps = 31/317 (9%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGR----AKMFDEMQQILHQLKHDTRIVPKEIIFCN 88
           ++ EA  LKP   +++ Y  II+   +       F+  QQ+L +      ++P  I + +
Sbjct: 424 HEMEAKGLKP---DVVTYSTIISAYCKNCDTHSAFELNQQMLEK-----GVLPDAITYSS 475

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY- 147
           +I      + L  A  +F  M    +Q     + +L++     G ++    L   M K  
Sbjct: 476 LIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAG 535

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY------------ 195
           V PD  +Y++LI+G   S R  +A ++  ++      P    +  L++            
Sbjct: 536 VLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLA 595

Query: 196 ---GLCLELRVDEALKLKEDIM-RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
              G C++  ++EA K+ + ++ R +N+  DG V++ LI G C  G +  AL   ++M++
Sbjct: 596 LLKGFCMKGLMNEADKVYQSMLDRNWNL--DGSVYSVLIHGHCRAGNVMKALSFHKQMLQ 653

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
                ++    SLI  LF+ G   E   +++++       ++    ALI     E + +A
Sbjct: 654 GGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNYCSLADAEASKALIDLNLNEGNVDA 713

Query: 312 AFTILDEMGDKGCKANP 328
              +L  M   G   +P
Sbjct: 714 VLDVLHGMAKDGLLPSP 730


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 153/320 (47%), Gaps = 19/320 (5%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  +   Y  +IT L  A M  E   +L Q      + P    +  +I  + +A L+E
Sbjct: 282 KGFVPDTSTYSKVITFLCEA-MKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIE 340

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
           +A   FDEM S      V  +  LL+  L   +L +  ++F ++++    P+  +Y+ L+
Sbjct: 341 QARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALV 400

Query: 160 HGCVVSRRLEDAWKVFDEMVKRR----------------LQPTLVTFGTLIYGLCLELRV 203
            G   +  ++ A +V+ +++                   + P +VT+G LI GLC   +V
Sbjct: 401 DGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKV 460

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
            +A +L  D M     +P+  ++ +LI G C VG++  A  V   M +         Y+S
Sbjct: 461 VDAQELL-DAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTS 519

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LI A+FK  R +    +L +M E  C PN VTY A+I G C+  + + A  +L  M +KG
Sbjct: 520 LIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKG 579

Query: 324 CKANPISYNVILGGLCKDGK 343
           C  N ++Y  ++ GL K GK
Sbjct: 580 CSPNVVTYTALIDGLGKSGK 599



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 133/298 (44%), Gaps = 17/298 (5%)

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
           FD   QI+ ++      VP    +  VI F   A  +E+A  +F EM S  V   V  + 
Sbjct: 269 FDMAFQII-KVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYT 327

Query: 123 TLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
            L++     G +++ +  F  M     S +  +Y  L+H  + +++L  A  +F+ M+  
Sbjct: 328 ILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDA 387

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN---------------VKPDGQVF 226
              P  +T+  L+ GLC    + +A ++   ++   +               + P+   +
Sbjct: 388 GCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTY 447

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
            +LI GLC   ++  A  + + M+ +  E +  IY +LI    K G+ +    +   M +
Sbjct: 448 GALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSK 507

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
            G  P   TY +LI    K+   + A  +L +M +  C  N ++Y  ++ GLC+ G+C
Sbjct: 508 CGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGEC 565



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 135/310 (43%), Gaps = 13/310 (4%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ + +    +I+ L  A +FDE    LH+++ ++  +P  + +  ++  + + + L   
Sbjct: 103 FKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNS-CIPNVVTYRTLLTGFLKKKQLGWC 161

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNILI 159
            ++ + M           FN+L++    C   D     K L ++ +    P   +YNI I
Sbjct: 162 KRIINMMMKEGCNPNPSLFNSLVHSY--CNARDYPYAYKLLKRMADCGCPPGYVAYNIFI 219

Query: 160 HGCVVSRRLED------AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
                   L        A KV++EM+        V        LC   + D A ++ + +
Sbjct: 220 GSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIK-V 278

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M      PD   ++ +I  LC   ++  A  + +EM    +  D   Y+ LI +  KAG 
Sbjct: 279 MMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGL 338

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             +  +   EM+  GC  N VTY AL+  + K +    A  I + M D GC  N I+Y+ 
Sbjct: 339 IEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSA 398

Query: 334 ILGGLCKDGK 343
           ++ GLCK G+
Sbjct: 399 LVDGLCKAGE 408



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 133/291 (45%), Gaps = 19/291 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  ++    +AK   +   I +++  D    P  I +  ++    +A  +++A ++
Sbjct: 357 NVVTYTALLHAYLKAKQLPQASDIFNRMI-DAGCPPNTITYSALVDGLCKAGEIQKACEV 415

Query: 106 FDEM--SSFNVQMTVKF--------------FNTLLNPKLTCGKLDRMKELFQIM-EKYV 148
           + ++  +S NV     F              +  L++      K+   +EL   M     
Sbjct: 416 YTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGC 475

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
            P+   Y+ LI G     ++++A +VF  M K    PT+ T+ +LI  +  + R+D A+K
Sbjct: 476 EPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMK 535

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           +   ++   +  P+   + ++I GLC +GE   AL +   M       +   Y++LI  L
Sbjct: 536 VLSQMVES-SCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGL 594

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            K+G+ +    +  +M  +GC PN VTY  LI+  C     + A ++L EM
Sbjct: 595 GKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEM 645



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 132/302 (43%), Gaps = 8/302 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + YD +I    +    D  Q++  ++      +P    + ++I    + R L+ A+++
Sbjct: 478 NHIIYDALIDGFCKVGKIDNAQEVFLRMSK-CGYLPTVHTYTSLIDAMFKDRRLDLAMKV 536

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
             +M   +    V  +  +++     G+  +  +L  +ME K  SP+  +Y  LI G   
Sbjct: 537 LSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGK 596

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S +++ + ++F +M  +   P  VT+  LI   C    +DEA  L  ++ + Y  K   Q
Sbjct: 597 SGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYL-Q 655

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + S+++G     +   +LG+ EE+        A +Y  LI    KAGR  E   + KEM
Sbjct: 656 GYCSVVQGFSK--KFIASLGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEM 713

Query: 285 KERGCKPNSVT---YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            E     N  +   Y +LI   C     E AF +  E+  KG       +  ++ GL K 
Sbjct: 714 MELSSSLNITSKDMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKV 773

Query: 342 GK 343
            K
Sbjct: 774 NK 775



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 4/190 (2%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P   +YN L+     + +++  ++V  EM +        T G     LC E R  +AL +
Sbjct: 38  PSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDALVM 97

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            E      + K D  +   +I GL        A+     M  +    +   Y +L++   
Sbjct: 98  IER----EDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFL 153

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           K  +      I+  M + GC PN   +N+L+  +C   D+  A+ +L  M D GC    +
Sbjct: 154 KKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYV 213

Query: 330 SYNVILGGLC 339
           +YN+ +G +C
Sbjct: 214 AYNIFIGSIC 223



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 103/237 (43%), Gaps = 12/237 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLK--HDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           N++ Y  +I  L R     E Q+ L  L    +    P  + +  +I   G++  ++ +L
Sbjct: 548 NVVTYTAMIDGLCR---IGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSL 604

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC-SYNILIHGC 162
           Q+F +MS+         +  L+N     G LD    L   M++   P     Y  ++ G 
Sbjct: 605 QLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQG- 663

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV---YNV 219
             S++   +  + +E+      P    +G LI       R++EAL+L +++M +    N+
Sbjct: 664 -FSKKFIASLGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNI 722

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
                ++ SLI+ LC   +L  A  +  E+ R  +  +  ++  LI  L K  + NE
Sbjct: 723 TSK-DMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNE 778



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 68/158 (43%), Gaps = 32/158 (20%)

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV----------------------- 250
           ++ +  +P G  + +L++ L   G++ +   V++EM                        
Sbjct: 31  LKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGR 90

Query: 251 ---------RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
                    R+  ++D  + + +IS L +A   +E  + L  M+   C PN VTY  L++
Sbjct: 91  WSDALVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLT 150

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           GF K++       I++ M  +GC  NP  +N ++   C
Sbjct: 151 GFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYC 188



 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M+  ++   A + SSL  A   +    +      E+K+ G +P+  TYNAL+        
Sbjct: 1   MISRRVAATAALRSSLRRACSSSSHTAD-----PELKDFGYRPSGATYNALVQVLATAGQ 55

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +  F +  EM + G   +  +       LCK+G+
Sbjct: 56  MDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGR 90


>gi|302757477|ref|XP_002962162.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
 gi|300170821|gb|EFJ37422.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
          Length = 484

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 148/302 (49%), Gaps = 6/302 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y+ +I  L +    D    +  +L HD  + P    +  ++    +A  LE A+++
Sbjct: 147 NVATYNTVINGLCKFGKIDWAVHLFTRLPHDL-VDPDGFTYSTLVHGLCQAERLEAAIKV 205

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG-CV 163
           +D M   N       +N + +      ++D   E+ + M ++   P   +YN +I+G C 
Sbjct: 206 YDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRGCKPSVVTYNCIINGVCQ 265

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              R+E+A+++F +MV     P  VT+GT+I GL     V   L+L + + +   + PDG
Sbjct: 266 YKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKA-GLSPDG 324

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG--RKNEFPAIL 281
             + SLI     V +L  A  + ++  R+ +  D  +Y++LIS   +A   R +E   + 
Sbjct: 325 YAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLISGYCRARKPRVDEALLLF 384

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           + MK+R   PN +TYN ++ G CK   F+ A+ I  EM    C  N +++ V+  G+   
Sbjct: 385 QNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTMGMIHC 444

Query: 342 GK 343
           GK
Sbjct: 445 GK 446



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 130/300 (43%), Gaps = 40/300 (13%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQIL-HQLKHDTRIVPKEIIFCNVIGFYGRARLLER 101
           +R+++  Y  ++  L RA+   E  +    +L    R  P    F  +I  +   R   R
Sbjct: 40  YRHDVYCYTRLLHHLVRARRTREAVRFFKRELCAHCR--PSLYSFTIIIQCFCNVRNPGR 97

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161
           A +    M S  +   V  +N +L      G++ R    F  M K   P+  +YN +I+G
Sbjct: 98  AWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRALIKFGKMGKTCKPNVATYNTVING 157

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                +++ A  +F  +    + P   T+ TL++GLC   R++ A+K+  D+M   N   
Sbjct: 158 LCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKV-YDMMLEANYDG 216

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + ++  G C           KE  V + +E                        +L
Sbjct: 217 DAGAYNAMADGFC-----------KERRVDEALE------------------------VL 241

Query: 282 KEMKERGCKPNSVTYNALISGFCKEED-FEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           K M +RGCKP+ VTYN +I+G C+ ++  E A+ +  +M    C  N ++Y  ++ GL K
Sbjct: 242 KTMIQRGCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSK 301



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 95/193 (49%), Gaps = 4/193 (2%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           +E A ++F +M   +       + T++       ++ R  ELF+ M K  +SPD  +Y+ 
Sbjct: 270 IEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKAGLSPDGYAYHS 329

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL--ELRVDEALKLKEDIMR 215
           LI+  V  R+L++A  +  +  +  + P +  + TLI G C   + RVDEAL L ++ M+
Sbjct: 330 LIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLISGYCRARKPRVDEALLLFQN-MK 388

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
              V P+   +  +++GLC  G    A  + +EM + K   +   +  +   +   G+ +
Sbjct: 389 DRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTMGMIHCGKTD 448

Query: 276 EFPAILKEMKERG 288
           +F  I  +M  +G
Sbjct: 449 KFERIFMDMVYKG 461



 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 38/87 (43%)

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           D   Y+ L+  L +A R  E     K      C+P+  ++  +I  FC   +   A+  L
Sbjct: 43  DVYCYTRLLHHLVRARRTREAVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYL 102

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
             M   G   +  +YNV+L G C  G+
Sbjct: 103 GYMRSLGIPPDVTAYNVVLKGYCDLGR 129


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 171/372 (45%), Gaps = 46/372 (12%)

Query: 7   RLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEM 66
           RL    R Q DP+ ALQ+  +         A   + F  +   Y+ II KLG A  FD M
Sbjct: 58  RLLTALREQADPEAALQMLNS---------ALAREDFAPSRAVYEEIIQKLGTAGAFDLM 108

Query: 67  QQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMF-DEMSSFNVQMTVKFFNTLL 125
           + ++ +++ +       ++  + +  Y R R  + A+ +  +++++F VQ     +N LL
Sbjct: 109 EGLVREMRREGHEAGAGVVR-SFVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLL 167

Query: 126 NPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ 184
           N      ++  ++ ++ ++ ++ + PD  + N LI     + ++  A  + +EM    + 
Sbjct: 168 NVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVA 227

Query: 185 PTLVTFGTLIYGLCLELRVDEALKLKEDIMRV--------YNV----------------- 219
           P   TF TL+ G   E  ++ AL++K  +M           NV                 
Sbjct: 228 PDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGY 287

Query: 220 ---------KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
                    +PD   + + +  LC  G +S AL V + M+++  + D   Y+++I+ L K
Sbjct: 288 IQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSK 347

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            G  +E   I+ +M +RGC P++ T+N LI   C +   E A  +  E+  KG   +  +
Sbjct: 348 NGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYT 407

Query: 331 YNVILGGLCKDG 342
           +N+++  LCK G
Sbjct: 408 FNILINALCKVG 419



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 152/343 (44%), Gaps = 43/343 (12%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           E H    F YN      +I  L +    DE + I++Q+  D   +P    F  +I     
Sbjct: 329 EGHDPDVFTYNT-----VINCLSKNGELDEAKGIVNQMV-DRGCLPDTTTFNTLIVALCS 382

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACS 154
              LE AL +  E++   +   V  FN L+N     G       LF+ M+    +PD  +
Sbjct: 383 QNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVT 442

Query: 155 YNILI-HGCVVSR----------------------------------RLEDAWKVFDEMV 179
           YNILI H C + +                                  R+E+A +VFD+M 
Sbjct: 443 YNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMD 502

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
              +  + VTF TLI GLC   R+D+A +L E +++   ++P    + S++   C  G+L
Sbjct: 503 AHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVK-EGLQPSNITYNSILTHYCKQGDL 561

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A  + E M  +  E+D   Y +LI+ L KAGR      +L+ M+ +G +P    YN +
Sbjct: 562 KKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPV 621

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           I    +  +   A ++  EM + G   + ++Y ++  GLC+ G
Sbjct: 622 IQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGG 664



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 113/221 (51%), Gaps = 2/221 (0%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +NT ++     G +    ++  +M ++   PD  +YN +I+    +  L++A  + ++MV
Sbjct: 303 YNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMV 362

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
            R   P   TF TLI  LC + R++EAL L  ++  V  + PD   F  LI  LC VG+ 
Sbjct: 363 DRGCLPDTTTFNTLIVALCSQNRLEEALDLARELT-VKGLSPDVYTFNILINALCKVGDP 421

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
            L + + EEM       D   Y+ LI  L   G+      +LKEM+  GC  ++VTYN +
Sbjct: 422 HLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTI 481

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           I   CK+   E A  + D+M   G   + +++N ++ GLCK
Sbjct: 482 IDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCK 522



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 128/263 (48%), Gaps = 2/263 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P ++ +   +    +   +  AL++ D M        V  +NT++N     G+LD  K +
Sbjct: 298 PDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGI 357

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
             Q++++   PD  ++N LI       RLE+A  +  E+  + L P + TF  LI  LC 
Sbjct: 358 VNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCK 417

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
                  ++L E+ M+     PD   +  LI  LC++G+L  AL + +EM  +       
Sbjct: 418 VGDPHLGIRLFEE-MKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTV 476

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+++I AL K  R  E   +  +M   G   ++VT+N LI G CK +  + A  ++++M
Sbjct: 477 TYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQM 536

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
             +G + + I+YN IL   CK G
Sbjct: 537 VKEGLQPSNITYNSILTHYCKQG 559



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 69/142 (48%)

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
           R D+A+ L  + +  + V+ D  V+  L+  L     + L   V  EM    I+ D    
Sbjct: 139 RFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTL 198

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           ++LI AL +A +      +L+EM      P+  T+  L+ GF +E   EAA  +  +M +
Sbjct: 199 NTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMME 258

Query: 322 KGCKANPISYNVILGGLCKDGK 343
            GC    ++ NV++ G CK G+
Sbjct: 259 TGCSPTRVTVNVLINGYCKMGR 280


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 154/304 (50%), Gaps = 13/304 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            ++ Y+ II  L + +  +  Q    +++    ++P  I + +++  Y +A  L+ AL +
Sbjct: 342 TVVTYNAIIHGLLKCEQAEAAQVKFAEMR-AMGLLPDVITYNSLLNRYCKAGNLKEALWL 400

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNILIHGC 162
             ++    +  TV  +NTL++     G L    R+KE  +++E+   PD C+Y IL++G 
Sbjct: 401 LGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKE--EMVEQGCFPDVCTYTILMNGS 458

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE---ALKLKEDIMRVYNV 219
              R L  A + FDEM+ + LQP    + T I   C EL +     A +L+E +M +  +
Sbjct: 459 RKVRNLAMAREFFDEMLSKGLQPDCFAYNTRI---CAELTLSSTPMAFQLRE-VMMLKGI 514

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   +  +I GLC  G L  A  +K +MV D ++ D   Y+ LI A  + G   E   
Sbjct: 515 YPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARK 574

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +L  M   G +P+ VTY  L+   C+  +  +A+    +M D G + N I+YNV++  LC
Sbjct: 575 LLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALC 634

Query: 340 KDGK 343
             G+
Sbjct: 635 MTGR 638



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 115/245 (46%), Gaps = 2/245 (0%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDAC 153
           + R L  A + FDEM S  +Q     +NT +  +LT        +L ++M  K + PD  
Sbjct: 460 KVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTV 519

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN++I G   +  L+DA ++  +MV   LQP  +T+  LI+  C    + EA KL   +
Sbjct: 520 TYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGM 579

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           +    ++P    +  L+   C  G L  A G   +M+   IE +   Y+ LI AL   GR
Sbjct: 580 VSD-GLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGR 638

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
                    EM ERG  PN  TY  LI G C+E ++  A  +  EM   G   +  ++N 
Sbjct: 639 TPLAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNA 698

Query: 334 ILGGL 338
           +  G 
Sbjct: 699 LFKGF 703



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 97/197 (49%), Gaps = 2/197 (1%)

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA- 206
           V+PD    N ++     + R +D   V+ EM++ R++PT+VT+ TL+     E R DEA 
Sbjct: 198 VAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDEAS 257

Query: 207 LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266
           + LKE   +      +   F  +I  L   G L  A+ + + M   K +  +  Y+ LI+
Sbjct: 258 MLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMRLSK-KASSFTYNPLIT 316

Query: 267 ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326
           AL + G   +  A+  EM+  G  P  VTYNA+I G  K E  EAA     EM   G   
Sbjct: 317 ALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLP 376

Query: 327 NPISYNVILGGLCKDGK 343
           + I+YN +L   CK G 
Sbjct: 377 DVITYNSLLNRYCKAGN 393



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 114/266 (42%), Gaps = 38/266 (14%)

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY---VSPDACSYNILIHG 161
           ++ EM    V+ T+  +NTLL+  L  G+ D    L + ME      S +  ++N++I  
Sbjct: 224 VYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISF 283

Query: 162 CVVSRRLEDAWKVFD----------------------------------EMVKRRLQPTL 187
                 LE+A K+ D                                  EM    + PT+
Sbjct: 284 LAREGHLENAVKLVDSMRLSKKASSFTYNPLITALLERGFVRKAEALQMEMENEGIMPTV 343

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           VT+  +I+GL L+    EA ++K   MR   + PD   + SL+   C  G L  AL +  
Sbjct: 344 VTYNAIIHGL-LKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLG 402

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           ++ R  +      Y++LI    + G   E   + +EM E+GC P+  TY  L++G  K  
Sbjct: 403 DLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRKVR 462

Query: 308 DFEAAFTILDEMGDKGCKANPISYNV 333
           +   A    DEM  KG + +  +YN 
Sbjct: 463 NLAMAREFFDEMLSKGLQPDCFAYNT 488



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 93/195 (47%), Gaps = 3/195 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LK    + + Y++II  L +     + +++  ++  D  + P  I +  +I  +    LL
Sbjct: 511 LKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDG-LQPDCITYTCLIHAHCERGLL 569

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNIL 158
             A ++ + M S  +Q +V  +  L++     G L      F+ +++  + P+  +YN+L
Sbjct: 570 REARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVL 629

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           IH   ++ R   A++ F EM++R L P   T+  LI G C E    +A++L  + M    
Sbjct: 630 IHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFE-MHQNG 688

Query: 219 VKPDGQVFASLIKGL 233
           + PD     +L KG 
Sbjct: 689 IPPDYCTHNALFKGF 703


>gi|326497659|dbj|BAK05919.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 523

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 124/213 (58%), Gaps = 4/213 (1%)

Query: 135 DRMKELFQIMEKYV-SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR---LQPTLVTF 190
           D + +L  +  KY+ +P+ C YNILI   V +   E A++V DEM +     ++P LVT+
Sbjct: 191 DLIADLRDLRNKYLPAPNTCVYNILIKHYVKNGDSETAFRVLDEMREYTCGDVRPNLVTY 250

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
            TL+ GLC   ++ EA +L E ++   ++ PD   +  +I G C +G++  A  +   M 
Sbjct: 251 STLLGGLCRAGKMKEAFELFEGMIEKDHIVPDQLTYNVIIDGFCRLGQVEKARTIFGFMR 310

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
           +++ E +A  Y++LI+   K G       + +EM+  G +P++V+Y ALI   C+    +
Sbjct: 311 KNECEPNAFNYATLINGHCKKGDVENAKLVFEEMRSAGVEPDAVSYTALIGCLCRHGSVD 370

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               ++ EM +KGCKA+ ++YN++L GLCKDG+
Sbjct: 371 EGIDLVMEMREKGCKADVVTYNLLLEGLCKDGR 403



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 123/276 (44%), Gaps = 4/276 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R NL+ Y  ++  L RA    E  ++   +     IVP ++ +  +I  + R   +E+A 
Sbjct: 244 RPNLVTYSTLLGGLCRAGKMKEAFELFEGMIEKDHIVPDQLTYNVIIDGFCRLGQVEKAR 303

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
            +F  M     +     + TL+N     G ++  K +F+ M    V PDA SY  LI GC
Sbjct: 304 TIFGFMRKNECEPNAFNYATLINGHCKKGDVENAKLVFEEMRSAGVEPDAVSYTALI-GC 362

Query: 163 VVSR-RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
           +     +++   +  EM ++  +  +VT+  L+ GLC + R+ E + L   +     V+ 
Sbjct: 363 LCRHGSVDEGIDLVMEMREKGCKADVVTYNLLLEGLCKDGRMAEVMDLLGRLPE-EGVQL 421

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   +  ++  LC+ G++  A+G+   M+           + L+  L   GR  +  A L
Sbjct: 422 NVASYRIVMNTLCSSGDMEKAVGLLGLMLGRGFLPHYAASNKLLIGLCDVGRVADATAAL 481

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
             + + G  P +  +  LI   C++     +  +LD
Sbjct: 482 YGLAKFGFMPEASCWAKLIEAVCRDRKLRRSVELLD 517


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 140/258 (54%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++  Y R   L+   ++   M +  VQ  V  ++ L+N      K+D    L
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGL 234

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 294

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 295 KGDLKQAHDLIDE-MSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDV 353

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP++ TY  +++ FCK+ D      +L EM
Sbjct: 354 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEM 413

Query: 320 GDKGCKANPISYNVILGG 337
              G   + ++YNV++ G
Sbjct: 414 QRDGHAPSVVTYNVLMNG 431



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 127/239 (53%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   SYN L++G + 
Sbjct: 130 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++ +++   M+   +QP + T+  LI GLC E ++D A  L ++ M V  + P+G 
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDE-MLVKGLVPNGV 248

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 308

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G KP+  TY  LI G CKE D + AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 309 SMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGR 367



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 129/244 (52%), Gaps = 6/244 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS--AMLASGVQPDVYTYSVL 218

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G     +++ A  +FDEM+ + L P  VTF TLI G C   RVD A+++ + ++   +
Sbjct: 219 INGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QS 277

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   + +LI GLC  G+L  A  + +EM    ++ D   Y++LI    K G  +   
Sbjct: 278 LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAF 337

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
              K M +   + + V Y ALISG C+E     A  +L EM   G K +  +Y +I+   
Sbjct: 338 EHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEF 397

Query: 339 CKDG 342
           CK G
Sbjct: 398 CKKG 401



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G      ++   + + G +P+ V+YN L+
Sbjct: 125 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 185 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 227


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 152/320 (47%), Gaps = 19/320 (5%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  +   Y  +IT L  A M  E   +L Q      ++P    +  +I  + +  L+E
Sbjct: 449 KGFVPDTSTYSKVITFLCEA-MKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIE 507

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
           +A   FDEM S     +V  +  LL+  L   ++ +  ++F  M +   +P+  +Y+ L+
Sbjct: 508 QARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALV 567

Query: 160 HGCVVSRRLEDAWKVFDEMVKRR----------------LQPTLVTFGTLIYGLCLELRV 203
            G   +   + A +V+ +M+                   + P +VT+G LI GLC   +V
Sbjct: 568 DGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKV 627

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
            +A +L  D+M     +P+  ++ +LI G C VG+L  A  V   M +         Y+S
Sbjct: 628 VDAQELL-DVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTS 686

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LI A+FK  R +    +L +M E  C PN VTY A+I G C+  + + A  +L  M  +G
Sbjct: 687 LIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRG 746

Query: 324 CKANPISYNVILGGLCKDGK 343
           C  N ++Y  ++ GL K GK
Sbjct: 747 CNPNVVTYTSLIDGLGKSGK 766



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 132/298 (44%), Gaps = 17/298 (5%)

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
           FD+  QI+ +L      VP    +  VI F   A  +E+A  +F EM S  V   V  + 
Sbjct: 436 FDKAFQII-KLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYT 494

Query: 123 TLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
            L++     G +++ +  F  ME    SP   +Y  L+H  + ++++  A  +F  MV  
Sbjct: 495 ILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDA 554

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN---------------VKPDGQVF 226
              P  +T+  L+ GLC      +A ++   ++   +               + P+   +
Sbjct: 555 GCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTY 614

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
            +LI GLC   ++  A  + + M  +  E +  IY +LI    K G+ +    +   M +
Sbjct: 615 GALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSK 674

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
            G  P   TY +LI    K+   + A  +L +M +  C  N ++Y  ++ GLC+ G+C
Sbjct: 675 CGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGEC 732



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 128/298 (42%), Gaps = 9/298 (3%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           +I+ L  A +FDE    LH+++ ++  +P  + +  ++  + + + L    ++   M + 
Sbjct: 280 MISGLMEASLFDEAISFLHRMRCNS-CIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNE 338

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLED- 170
                   FN+L++            +L   M      P    YNI I        L   
Sbjct: 339 GCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSP 398

Query: 171 -----AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
                A KV++EM+        V        LC   + D+A ++ + +MR   V PD   
Sbjct: 399 DLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFV-PDTST 457

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           ++ +I  LC   ++  A  + +EM    +  D   Y+ LI +  K G   +  +   EM+
Sbjct: 458 YSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEME 517

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             GC P+ VTY AL+  + K +    A  I   M D GC  N I+Y+ ++ GLCK G+
Sbjct: 518 SVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGE 575



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 133/291 (45%), Gaps = 19/291 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  ++    + K   +   I H++  D    P  I +  ++    +A   ++A ++
Sbjct: 524 SVVTYTALLHAYLKTKQVPQASDIFHRMV-DAGCAPNTITYSALVDGLCKAGESQKACEV 582

Query: 106 FDEM--SSFNVQMTVKF--------------FNTLLNPKLTCGKLDRMKELFQIMEKY-V 148
           + +M  +S NV     F              +  L++      K+   +EL  +M     
Sbjct: 583 YAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGC 642

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
            P+   Y+ LI G     +L++A +VF  M K    PT+ T+ +LI  +  + R+D A+K
Sbjct: 643 EPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIK 702

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           +   ++   +  P+   + ++I GLC +GE   AL +   M +     +   Y+SLI  L
Sbjct: 703 VLSQMLES-SCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGL 761

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            K+G+ +    +  +M  +GC PN VTY  LI+  C     + A ++L EM
Sbjct: 762 GKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEM 812



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 136/302 (45%), Gaps = 8/302 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + YD +I    +    D  Q++  ++      +P    + ++I    + R L+ A+++
Sbjct: 645 NHIIYDALIDGFCKVGKLDNAQEVFFRMSK-CGYLPTVHTYTSLIDAMFKDRRLDLAIKV 703

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
             +M   +    V  +  +++     G+  +  +L  +MEK   +P+  +Y  LI G   
Sbjct: 704 LSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGK 763

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S +++ + ++F +M+ +   P  VT+  LI   C    +DEA  L  ++ + Y  K   Q
Sbjct: 764 SGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYV-Q 822

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + S+++G     +   +LG+ EE+    +   A +Y  LI +  KAGR  +   + KEM
Sbjct: 823 GYCSVVQGFSK--KFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEM 880

Query: 285 KERGCKPNSV---TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            E     N     TY +LI   C     E AF +  E+  KG      ++  ++ GL K 
Sbjct: 881 MEVSSSLNITSKDTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKV 940

Query: 342 GK 343
            K
Sbjct: 941 NK 942



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 107/253 (42%), Gaps = 8/253 (3%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKY 147
           V+ F  RAR  ER L+   E+   + ++  +  N ++      G   + ++EL ++ +  
Sbjct: 146 VLHFDDRARTTERLLR---EIGEDDREVLGRLLNVIVRKCCRHGAWAKALEELGRLKDFG 202

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
             P   +YN L+     + +++  ++V  EM +        T G     LC E R  +AL
Sbjct: 203 YRPSGATYNALVQVLATAGQMDMGFRVQKEMSELGFCTDKFTVGCFAQALCKEGRWSDAL 262

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + E      + K D  +   +I GL        A+     M  +    +   Y +L++ 
Sbjct: 263 VMIER----EDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAG 318

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
             K  +      I+  M   GC PN   +N+L+  +C   D+  A+ +L+ M   GC   
Sbjct: 319 FLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPG 378

Query: 328 PISYNVILGGLCK 340
            + YN+ +G +C 
Sbjct: 379 YVVYNIFIGSICS 391



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 119/282 (42%), Gaps = 41/282 (14%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  + + +  D   ++L Q+  ++   P  + +  +I    R    ++AL++   M
Sbjct: 684 YTSLIDAMFKDRRLDLAIKVLSQML-ESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMM 742

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
                   V  + +L++     GK+D   +LF Q++ +  +P+  +Y +LI+ C  +  L
Sbjct: 743 EKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLL 802

Query: 169 EDAWKVFDEMVKRRLQPTLV----------------TFGTL-------------IYGLCL 199
           ++A  +  EM K+   P  V                + G L             +YGL +
Sbjct: 803 DEAHSLLSEM-KQTYWPKYVQGYCSVVQGFSKKFIASLGLLEELESHGMVSIAPVYGLLI 861

Query: 200 EL-----RVDEALKLKEDIMRV---YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           +      R+++AL+L +++M V    N+      + SLI+ LC   +L  A  +  E+ R
Sbjct: 862 DSFSKAGRLEKALELHKEMMEVSSSLNITSK-DTYTSLIQALCLASQLEKAFELYSEITR 920

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
             +  +   +  LI  L K  + NE   +   M + G    S
Sbjct: 921 KGVVPELSAFICLIKGLIKVNKWNEALQLCYSMCDEGVNWQS 962



 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 4/101 (3%)

Query: 247 EEMVRDKIEMDAGIYSSLISALF-KAGRKNEFPAILKEM---KERGCKPNSVTYNALISG 302
           E ++R+  E D  +   L++ +  K  R   +   L+E+   K+ G +P+  TYNAL+  
Sbjct: 157 ERLLREIGEDDREVLGRLLNVIVRKCCRHGAWAKALEELGRLKDFGYRPSGATYNALVQV 216

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
                  +  F +  EM + G   +  +       LCK+G+
Sbjct: 217 LATAGQMDMGFRVQKEMSELGFCTDKFTVGCFAQALCKEGR 257


>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 418

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 129/239 (53%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   SYN L++G + 
Sbjct: 124 YEEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIR 183

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L + +K+   M    +QP + T+  LI GLC E ++D+A +L E+ M V  + P+G 
Sbjct: 184 LGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEE-MLVKGLVPNGV 242

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ V ++M+   +  D   Y++LI  L K G  N+   ++ EM
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEM 302

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G KP+ +TY  LI G CKE D + AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 303 SMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGR 361



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 132/244 (54%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++  Y R   L    ++   M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 169 PSVVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 141 FQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ ++ K + P+  ++  LI G   + R++ A +V+ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  +++A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 289 KGALNQAHDLMDE-MSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +++EM   G KP++ TY  +I+ FCK+ D      +L EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMMREMLSFGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEM 407

Query: 320 GDKG 323
              G
Sbjct: 408 QRDG 411



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 138/264 (52%), Gaps = 3/264 (1%)

Query: 81  PKEIIFCNVIGF-YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F N++   + +   +  A  +FD ++ + ++ +V  +NTL+N  +  G L+   +
Sbjct: 133 PASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFK 192

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L   M    V PD  +Y++LI+G     +++DA ++F+EM+ + L P  VTF TLI G C
Sbjct: 193 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHC 252

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              RVD A+++ + ++   ++ PD   + +LI GLC  G L+ A  + +EM    ++ D 
Sbjct: 253 KNGRVDLAMEVYKQMLS-QSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDK 311

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y++LI    K G  +      K M +   + + V Y ALISG C+E     A  ++ E
Sbjct: 312 ITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMRE 371

Query: 319 MGDKGCKANPISYNVILGGLCKDG 342
           M   G K +  +Y +I+   CK G
Sbjct: 372 MLSFGLKPDTGTYTMIINEFCKKG 395



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 112/222 (50%), Gaps = 2/222 (0%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           H + + P    +  +I    +   ++ A ++F+EM    +      F TL++     G++
Sbjct: 198 HASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRV 257

Query: 135 DRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           D   E++ Q++ + + PD  +YN LI+G      L  A  + DEM  + L+P  +T+ TL
Sbjct: 258 DLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTL 317

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G C E  +D A + ++ +++  N++ D   + +LI GLC  G    A  +  EM+   
Sbjct: 318 IDGCCKEGDLDTAFEHRKRMIQE-NIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSFG 376

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
           ++ D G Y+ +I+   K G   +   +LKEM+  G  P+ VT
Sbjct: 377 LKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVT 418



 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/115 (21%), Positives = 54/115 (46%)

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +++ L  +   +L     EE++          ++ L+    K G      ++   + + G
Sbjct: 107 MLEHLVKLKYFNLVWAFYEEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWG 166

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +P+ V+YN L++G+ +  D    F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 167 LRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESK 221



 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 17/177 (9%)

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR---------VY--------NVKPDGQV 225
            + TL ++ T+I+ LC      EA  L + ++          V+        N + D  V
Sbjct: 9   FRHTLHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAIIETKGNQRSDIYV 68

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F+ LI      G L  A+         K  +       ++  L K    N   A  +E+ 
Sbjct: 69  FSGLITAYLESGFLRDAVECYRLTREHKFWVPFDTCKKMLEHLVKLKYFNLVWAFYEEIL 128

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           E G   +   +N L+  FCKE D   A ++ D +   G + + +SYN ++ G  + G
Sbjct: 129 ECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLG 185


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 138/264 (52%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMKE 139
           P    +  +I  + +   ++ A ++ D M S +       +N ++    + GKLD  +K 
Sbjct: 152 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 211

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L Q++     P   +Y ILI   ++   +++A K+ DEM+ R L+P + T+ T+I G+C 
Sbjct: 212 LDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCK 271

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E  VD A ++  + + +   +PD   +  L++ L   G+      +  +M  +K + +  
Sbjct: 272 EGMVDRAFEMIRN-LELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 330

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YS LI+ L + G+  E   +LK MKE+G  P++ +Y+ LI+ FC+E   + A   L+ M
Sbjct: 331 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 390

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
              GC  + ++YN +L  LCK+GK
Sbjct: 391 ISDGCLPDIVNYNTVLATLCKNGK 414



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 150/303 (49%), Gaps = 3/303 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  + + Y+++I  L      D   ++L QL  D    P  I +  +I        ++
Sbjct: 183 KDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDN-CQPTVITYTILIEATMLEGGVD 241

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
            AL++ DEM S  ++  +  +NT++      G +DR  E+ + +E K   PD  SYNIL+
Sbjct: 242 EALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILL 301

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
              +   + E+  K+  +M   +  P +VT+  LI  LC + +++EA+ L + +M+   +
Sbjct: 302 RALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLK-LMKEKGL 360

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   +  LI   C  G L +A+   E M+ D    D   Y+++++ L K G+ ++   
Sbjct: 361 TPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALE 420

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           I  ++ E GC PNS +YN + S      D   A  ++ EM   G   + I+YN ++  LC
Sbjct: 421 IFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLC 480

Query: 340 KDG 342
           ++G
Sbjct: 481 REG 483



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 110/210 (52%), Gaps = 2/210 (0%)

Query: 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           ++ +  L  ++ K  +PD      LI G    R +  A +V  E++++  QP +  +  L
Sbjct: 102 IESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVM-EILEKFGQPDVFAYNAL 160

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G C   R+D+A ++  D MR  +  PD   +  +I  LC+ G+L LAL V ++++ D 
Sbjct: 161 INGFCKMNRIDDATRVL-DRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDN 219

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
            +     Y+ LI A    G  +E   +L EM  RG KP+  TYN +I G CKE   + AF
Sbjct: 220 CQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAF 279

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ++  +  KGC+ + ISYN++L  L   GK
Sbjct: 280 EMIRNLELKGCEPDVISYNILLRALLNQGK 309



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 149/304 (49%), Gaps = 14/304 (4%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL- 98
           LKP   ++  Y+ II  + +  M D   +++  L  + +    ++I  N++    RA L 
Sbjct: 255 LKP---DMFTYNTIIRGMCKEGMVDRAFEMIRNL--ELKGCEPDVISYNILL---RALLN 306

Query: 99  ---LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACS 154
               E   ++  +M S      V  ++ L+      GK++    L ++M EK ++PDA S
Sbjct: 307 QGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYS 366

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           Y+ LI       RL+ A +  + M+     P +V + T++  LC   + D+AL++   + 
Sbjct: 367 YDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLG 426

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
            V    P+   + ++   L + G+   AL +  EMV + I+ D   Y+S+IS L + G  
Sbjct: 427 EV-GCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMV 485

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           ++   +L +M+     P+ VTYN ++ GFCK    E A  +LD M   GC+ N  +Y V+
Sbjct: 486 DKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVL 545

Query: 335 LGGL 338
           + G+
Sbjct: 546 IEGI 549


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 140/258 (54%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++  Y R   L+   ++   M +  VQ  V  ++ L+N      K+D    L
Sbjct: 156 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGL 215

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 216 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 275

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 276 KGDLKQAHDLIDE-MSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDV 334

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP++ TY  +++ FCK+ D      +L EM
Sbjct: 335 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEM 394

Query: 320 GDKGCKANPISYNVILGG 337
              G   + ++YNV++ G
Sbjct: 395 QRDGHAPSVVTYNVLMNG 412



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 127/239 (53%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   SYN L++G + 
Sbjct: 111 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 170

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++ +++   M+   +QP + T+  LI GLC E ++D A  L ++ M V  + P+G 
Sbjct: 171 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDE-MLVKGLVPNGV 229

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM
Sbjct: 230 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 289

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G KP+  TY  LI G CKE D + AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 290 SMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGR 348



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 129/244 (52%), Gaps = 6/244 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 142 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS--AMLASGVQPDVYTYSVL 199

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G     +++ A  +FDEM+ + L P  VTF TLI G C   RVD A+++ + ++   +
Sbjct: 200 INGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QS 258

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   + +LI GLC  G+L  A  + +EM    ++ D   Y++LI    K G  +   
Sbjct: 259 LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAF 318

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
              K M +   + + V Y ALISG C+E     A  +L EM   G K +  +Y +I+   
Sbjct: 319 EHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEF 378

Query: 339 CKDG 342
           CK G
Sbjct: 379 CKKG 382



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G      ++   + + G +P+ V+YN L+
Sbjct: 106 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 165

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 166 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 208


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 138/264 (52%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMKE 139
           P    +  +I  + +   ++ A ++ D M S +       +N ++    + GKLD  +K 
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L Q++     P   +Y ILI   ++   +++A K+ DEM+ R L+P + T+ T+I G+C 
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E  VD A ++  + + +   +PD   +  L++ L   G+      +  +M  +K + +  
Sbjct: 276 EGMVDRAFEMVRN-LELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YS LI+ L + G+  E   +LK MKE+G  P++ +Y+ LI+ FC+E   + A   L+ M
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 394

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
              GC  + ++YN +L  LCK+GK
Sbjct: 395 ISDGCLPDIVNYNTVLATLCKNGK 418



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 151/303 (49%), Gaps = 3/303 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  + + Y+++I  L      D   ++L+QL  D    P  I +  +I        ++
Sbjct: 187 KDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDN-CQPTVITYTILIEATMLEGGVD 245

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
            AL++ DEM S  ++  +  +NT++      G +DR  E+ + +E K   PD  SYNIL+
Sbjct: 246 EALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILL 305

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
              +   + E+  K+  +M   +  P +VT+  LI  LC + +++EA+ L + +M+   +
Sbjct: 306 RALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLK-LMKEKGL 364

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   +  LI   C  G L +A+   E M+ D    D   Y+++++ L K G+ ++   
Sbjct: 365 TPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALE 424

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           I  ++ E GC PNS +YN + S      D   A  ++ EM   G   + I+YN ++  LC
Sbjct: 425 IFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLC 484

Query: 340 KDG 342
           ++G
Sbjct: 485 REG 487



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 150/307 (48%), Gaps = 14/307 (4%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           +  LKP   ++  Y+ II  + +  M D   +++  L  + +    ++I  N++    RA
Sbjct: 256 SRGLKP---DMFTYNTIIRGMCKEGMVDRAFEMVRNL--ELKGSEPDVISYNILL---RA 307

Query: 97  RL----LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPD 151
            L     E   ++  +M S      V  ++ L+      GK++    L ++M EK ++PD
Sbjct: 308 LLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPD 367

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
           A SY+ LI       RL+ A +  + M+     P +V + T++  LC   + D+AL++  
Sbjct: 368 AYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFG 427

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            +  V    P+   + ++   L + G+   AL +  EM+ + I+ D   Y+S+IS L + 
Sbjct: 428 KLGEV-GCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCRE 486

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G  +E   +L +M+     P+ VTYN ++ GFCK    E A  +L+ M   GC+ N  +Y
Sbjct: 487 GMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTY 546

Query: 332 NVILGGL 338
            V++ G+
Sbjct: 547 TVLIEGI 553



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 108/210 (51%), Gaps = 2/210 (0%)

Query: 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           ++ +  L  ++ K  +PD      LI G    R +  A +V  E++++  QP +  +  L
Sbjct: 106 IESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVM-EILEKFGQPDVFAYNAL 164

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G C   R+D+A ++  D MR  +  PD   +  +I  LC+ G+L LAL V  +++ D 
Sbjct: 165 INGFCKMNRIDDATRVL-DRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDN 223

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
            +     Y+ LI A    G  +E   ++ EM  RG KP+  TYN +I G CKE   + AF
Sbjct: 224 CQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAF 283

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ++  +  KG + + ISYN++L  L   GK
Sbjct: 284 EMVRNLELKGSEPDVISYNILLRALLNQGK 313


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 158/306 (51%), Gaps = 8/306 (2%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP  Y    Y+  I++L + +  +E   +L +L  ++ +VP  + +  +I        L
Sbjct: 283 LKPDCYT---YNSFISRLCKERRIEEASGVLCKLL-ESGLVPNAVTYNALIDGCCNKGDL 338

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           ++A    DEM +  +  +V  +N L++      +++  +++ + M EK V PD  +YNI 
Sbjct: 339 DKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQ 398

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL-KLKEDIMRVY 217
           I+G       + A  +FDEMV++ ++PT+ T+ +LI       R+ EA  K K+ I    
Sbjct: 399 INGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKE-- 456

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + PD  +F +LI G C  G +  A  + +EM   K+  D   +++L+    +  +  E 
Sbjct: 457 GMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEA 516

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +L EMKERG KP+ ++YN LISG+ K  D + A  + DEM   G     ++YN ++ G
Sbjct: 517 KKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQG 576

Query: 338 LCKDGK 343
             K G+
Sbjct: 577 YSKIGE 582



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 139/268 (51%), Gaps = 9/268 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y+L+I  L   K  +E + ++ +++ +  + P  + +   I  Y R    ++AL +
Sbjct: 356 SVFTYNLLIHALFLEKRIEEAEDMIKEMR-EKGVEPDVVTYNIQINGYCRCGNAKKALSL 414

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHG 161
           FDEM   N++ TV+ + +L++     GK +RM E  +  +K +     PD   +N LI G
Sbjct: 415 FDEMVEKNIRPTVETYTSLID---VFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDG 471

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
             V+  ++ A+++  EM   ++ P  VTF TL+ G C E +V+EA KL ++ M+   +KP
Sbjct: 472 HCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDE-MKERGIKP 530

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +LI G    G++  AL V +EM+    +     Y++LI    K G  +    +L
Sbjct: 531 DHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELL 590

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDF 309
           +EM+ +G  P+  TY  +I      +D 
Sbjct: 591 REMQSKGITPDDSTYLYVIEAMKTNDDL 618



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 128/241 (53%), Gaps = 11/241 (4%)

Query: 105 MFDEMS----SFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
           +F+E+S      NV+ T+  F+ LL+      K D   E   +M E  + P   + N L+
Sbjct: 131 IFNELSLARNRLNVKTTL-VFDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLL 189

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--MRVY 217
              +   +++ AW V++EMVK  ++ ++VTF  +I  LC E +  +A   K+ I  M VY
Sbjct: 190 SLLLKLNKIKMAWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKA---KDFIGHMEVY 246

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            VKP+   + ++I G C  G+   A  + + M    ++ D   Y+S IS L K  R  E 
Sbjct: 247 GVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEA 306

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +L ++ E G  PN+VTYNALI G C + D + AF   DEM ++G  A+  +YN+++  
Sbjct: 307 SGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHA 366

Query: 338 L 338
           L
Sbjct: 367 L 367



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 90/173 (52%), Gaps = 4/173 (2%)

Query: 174 VFDEM--VKRRLQ-PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           +F+E+   + RL   T + F  L+   C   + DEAL+   ++M+   + P  +   SL+
Sbjct: 131 IFNELSLARNRLNVKTTLVFDLLLSAYCQFRKPDEALECL-NLMKENEIIPKTETCNSLL 189

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
             L  + ++ +A  V EEMV+  I+     ++ +I+ L + G+  +    +  M+  G K
Sbjct: 190 SLLLKLNKIKMAWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVK 249

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           PN VTYN +I+G+C    FEAA  I   M DK  K +  +YN  +  LCK+ +
Sbjct: 250 PNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERR 302


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 153/303 (50%), Gaps = 4/303 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + +++ Y +++        F +M  + H +  D  IV     F  +I  + +  +++
Sbjct: 406 KGHKPDIISYSILLHGYATEGRFVDMNNLFHSMT-DNGIVADSHCFNILINAHAKRGMMD 464

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILI 159
            AL +F EM    V   V  + T++      G+L D M++L Q++   + P+   Y+ LI
Sbjct: 465 EALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLI 524

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRL-QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
            G      L  A ++  EM+ + + +P +  F ++I+ LC E RV  A  +   ++ + +
Sbjct: 525 QGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGD 584

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
            +PD   F SLI G C VG++  A GV + MV    E D   YS+LI+  FK+GR ++  
Sbjct: 585 -RPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGL 643

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            + +EM  +  KP +VTY+ ++ G  +     AA  +  EM + G   +  +Y +IL GL
Sbjct: 644 ILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGL 703

Query: 339 CKD 341
           C++
Sbjct: 704 CRN 706



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 156/341 (45%), Gaps = 51/341 (14%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ I+  L +A+  D+ + +L Q+  D  I P E+ +  +I  Y      + A +M
Sbjct: 306 NVVTYNSIVHALCKARAMDKAELVLRQM-FDNSIQPDEVTYTAMIHGYSCLGRWKEAAKM 364

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           F EM+   +   +  FN+L++      +     E+F  I  K   PD  SY+IL+HG   
Sbjct: 365 FKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYAT 424

Query: 165 SRR-----------------------------------LEDAWKVFDEMVKRRLQPTLVT 189
             R                                   +++A  +F EM  + + P +VT
Sbjct: 425 EGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVT 484

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           + T+I  LC   R+ +A++    ++ +  +KP+  V+ SLI+G C  G+L  A  +  EM
Sbjct: 485 YATVIAALCRMGRLADAMEKLSQMISI-GLKPNTVVYHSLIQGFCTHGDLIKAKELVSEM 543

Query: 250 VRDKIEMDAGI-------YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
                 MD GI       +SS+I +L   GR      +   +   G +P+  T+N+LI G
Sbjct: 544 ------MDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDG 597

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +C     + AF +LD M   G + + ++Y+ ++ G  K G+
Sbjct: 598 YCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGR 638



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)

Query: 96  ARLLERALQMF-DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV-----S 149
           A+  + AL M    MS          +NT++  K  CG   R +E   ++ +       S
Sbjct: 213 AKRTDEALSMLLHRMSELGCVPDAFSYNTVI--KSLCGG-SRSQEALDMLLRMTKGDGCS 269

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA-LK 208
           PD  SY ++IHG  +   +  A  +F+EMV++ + P +VT+ ++++ LC    +D+A L 
Sbjct: 270 PDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELV 329

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           L++  M   +++PD   + ++I G   +G    A  + +EM R+ +  D   ++SL+ +L
Sbjct: 330 LRQ--MFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSL 387

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K  R  E   I   +  +G KP+ ++Y+ L+ G+  E  F     +   M D G  A+ 
Sbjct: 388 CKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADS 447

Query: 329 ISYNVILGGLCKDG 342
             +N+++    K G
Sbjct: 448 HCFNILINAHAKRG 461



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 135/284 (47%), Gaps = 11/284 (3%)

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
           +F+EM Q          +VP  + + +++    +AR +++A  +  +M   ++Q     +
Sbjct: 294 LFNEMVQ--------KGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTY 345

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
             +++     G+     ++F+ M +  + PD  ++N L+      +R ++A ++F  +  
Sbjct: 346 TAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIAT 405

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           +  +P ++++  L++G   E R  +   L    M    +  D   F  LI      G + 
Sbjct: 406 KGHKPDIISYSILLHGYATEGRFVDMNNLFHS-MTDNGIVADSHCFNILINAHAKRGMMD 464

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            AL +  EM    +  +   Y+++I+AL + GR  +    L +M   G KPN+V Y++LI
Sbjct: 465 EALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLI 524

Query: 301 SGFCKEEDFEAAFTILDEMGDKGC-KANPISYNVILGGLCKDGK 343
            GFC   D   A  ++ EM D+G  + N   ++ I+  LC +G+
Sbjct: 525 QGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGR 568



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 103/211 (48%), Gaps = 8/211 (3%)

Query: 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGT 192
           L RM EL  +      PDA SYN +I       R ++A  +   M K     P +V++  
Sbjct: 224 LHRMSELGCV------PDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTM 277

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           +I+GL +E  + +A  L  ++++   V P+   + S++  LC    +  A  V  +M  +
Sbjct: 278 VIHGLFMEGEISKACNLFNEMVQ-KGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDN 336

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
            I+ D   Y+++I      GR  E   + KEM   G  P+ VT+N+L+   CK +  + A
Sbjct: 337 SIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEA 396

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             I   +  KG K + ISY+++L G   +G+
Sbjct: 397 AEIFHSIATKGHKPDIISYSILLHGYATEGR 427



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 140/325 (43%), Gaps = 39/325 (12%)

Query: 32  PNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDE---------MQQILHQLKHDTRIVPK 82
           PN    H L   +    H DLI  K   ++M D+            I+H L ++ R++  
Sbjct: 515 PNTVVYHSL--IQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNA 572

Query: 83  EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ 142
           + +F  VI    R  +                      FN+L++     GK+D+    F 
Sbjct: 573 QDVFNLVIHIGDRPDIFT--------------------FNSLIDGYCLVGKMDKA---FG 609

Query: 143 IMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           +++  VS    PD  +Y+ LI+G   S R++D   +F EM+ +R++PT VT+  ++ GL 
Sbjct: 610 VLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLF 669

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              R   A K+  +++           +  +++GLC       A+ +  ++    ++ + 
Sbjct: 670 RAGRTSAAKKMFHEMIE-SGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEI 728

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
            I +++I AL+K  R+ E   +   +   G  PN+ TY  +I    KE   E A  +   
Sbjct: 729 AILNTMIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSS 788

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M   GC  +    N I+  L + G+
Sbjct: 789 MEKTGCAPSSRLLNDIIRMLLQKGE 813



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 1/185 (0%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +Y IL+  C  +RR +     F  +++  L+   +   T +  LC   R DEAL +    
Sbjct: 167 TYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRTDEALSMLLHR 226

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR-DKIEMDAGIYSSLISALFKAG 272
           M      PD   + ++IK LC       AL +   M + D    D   Y+ +I  LF  G
Sbjct: 227 MSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEG 286

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
             ++   +  EM ++G  PN VTYN+++   CK    + A  +L +M D   + + ++Y 
Sbjct: 287 EISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYT 346

Query: 333 VILGG 337
            ++ G
Sbjct: 347 AMIHG 351



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 86/179 (48%)

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
           C   R  E    +   M +    P   ++ T+I  LC   R  EAL +   + +     P
Sbjct: 211 CYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSP 270

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   +  +I GL   GE+S A  +  EMV+  +  +   Y+S++ AL KA   ++   +L
Sbjct: 271 DVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVL 330

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           ++M +   +P+ VTY A+I G+     ++ A  +  EM  +G   + +++N ++  LCK
Sbjct: 331 RQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCK 389


>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
           inaguensis]
          Length = 431

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 137/273 (50%), Gaps = 39/273 (14%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS--AMLASGVQPDVYTYSVL 218

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE------- 211
           I+G     +++DA ++FDEM+ + L P  VTF TLI G C   RVD A+++ +       
Sbjct: 219 INGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSL 278

Query: 212 ---------------------------DIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
                                      D M +  +KPD   + +LI G C  G+L  A  
Sbjct: 279 LPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFK 338

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
            ++ M++  I +D   Y++LIS L + GR  +   +L+EM   G KP+  TY  +I+ FC
Sbjct: 339 HRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFC 398

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           K+ D      +L EM   G   + ++YNV++ G
Sbjct: 399 KKGDVWKGSKLLKEMQRNGHVPSVVTYNVLMNG 431



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 130/250 (52%), Gaps = 2/250 (0%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDAC 153
           + R  +     ++E+       ++ FFN L++     G +   + +F  + K+ + P   
Sbjct: 119 KLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVV 178

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           SYN L++G +    L++ +++   M+   +QP + T+  LI GLC E ++D+A +L ++ 
Sbjct: 179 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDE- 237

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M V  + P+G  F +LI G C  G + LA+ + + M+   +  D   Y++LI  L K G 
Sbjct: 238 MLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGD 297

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             +   ++ EM  +G KP+  TY  LI G CKE D + AF     M     + + ++Y  
Sbjct: 298 LKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTA 357

Query: 334 ILGGLCKDGK 343
           ++ GLC++G+
Sbjct: 358 LISGLCQEGR 367


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 144/298 (48%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  II  L + K+  +   +  ++    RI P  + F ++I  +      + A ++
Sbjct: 192 NVVMYSTIIDGLCKDKLVTDAYGLYSEMIVK-RIPPTVVTFSSLIYGFCIVGKFKDAFRL 250

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           F+EM   N+      FN L++     GK+   K +  +M K  V P   +YN L+ G  +
Sbjct: 251 FNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCL 310

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +  A  V   + + R+ P   ++  +I G C    VDEAL L  + M    + P   
Sbjct: 311 VNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHE-MCCRGIAPHKV 369

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SLI GLC  G +  A  + +EM  + I  D   Y+SLI    K    ++  A++K++
Sbjct: 370 TYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKI 429

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           KE G +PN  TYN LI G CK    + A  +  ++  KG   N  +YN+++ GLCK+G
Sbjct: 430 KEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEG 487



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 154/303 (50%), Gaps = 5/303 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEII-FCNVIGFYGRARLLER 101
           F  N + Y ++I  L +        Q+L Q+  + ++V   ++ +  +I    + +L+  
Sbjct: 154 FHLNHVTYGILINGLCKMGQTRAALQVLRQI--EGKLVNTNVVMYSTIIDGLCKDKLVTD 211

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           A  ++ EM    +  TV  F++L+      GK      LF +++ K ++PDA ++NIL+ 
Sbjct: 212 AYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVD 271

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                 ++++A  V   M+K  ++PT+VT+ TL+ G CL   V +A  +   I R+  V 
Sbjct: 272 ALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRM-RVA 330

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+ + +  +I G C +  +  AL +  EM    I      Y+SLI  L KAGR      +
Sbjct: 331 PNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWEL 390

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + EM       + VTYN+LI  FCK +  + A  ++ ++ + G + N  +YN+++ GLCK
Sbjct: 391 VDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCK 450

Query: 341 DGK 343
            G+
Sbjct: 451 GGQ 453



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 129/249 (51%), Gaps = 8/249 (3%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNI 157
           +  AL   D + +    +    +  L+N     G+    ++ L QI  K V+ +   Y+ 
Sbjct: 139 VNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYST 198

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I G    + + DA+ ++ EM+ +R+ PT+VTF +LIYG C+  +  +A +L  + M + 
Sbjct: 199 IIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNE-MVMK 257

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA---LFKAGRK 274
           N+ PD   F  L+  LC  G++  A  V   M+++ +E     Y++L+     + + G+ 
Sbjct: 258 NINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKA 317

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
               +I+  M+     PNS +YN +I+GFCK +  + A  +  EM  +G   + ++YN +
Sbjct: 318 KHVLSIISRMR---VAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSL 374

Query: 335 LGGLCKDGK 343
           + GLCK G+
Sbjct: 375 IDGLCKAGR 383



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 122/246 (49%), Gaps = 2/246 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           + P  + +  ++  Y     + +A  +   +S   V    + +N ++N       +D   
Sbjct: 294 VEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEAL 353

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            LF  M  + ++P   +YN LI G   + R+  AW++ DEM    +   +VT+ +LI   
Sbjct: 354 CLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVF 413

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C    VD+A+ L + I + + ++P+   +  LI GLC  G+L  A  V ++++     ++
Sbjct: 414 CKNQHVDKAIALVKKI-KEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVN 472

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           A  Y+ +I+ L K G  +E   +L +M++ G  P++VTY  +I     +++ E A  +L 
Sbjct: 473 AWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLR 532

Query: 318 EMGDKG 323
           EM  KG
Sbjct: 533 EMVIKG 538



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 90/218 (41%), Gaps = 34/218 (15%)

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--- 213
           IL  G  ++ ++ +A    D ++        VT+G LI GLC   +   AL++   I   
Sbjct: 128 ILKMGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGK 187

Query: 214 -------------------------------MRVYNVKPDGQVFASLIKGLCAVGELSLA 242
                                          M V  + P    F+SLI G C VG+   A
Sbjct: 188 LVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDA 247

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
             +  EMV   I  DA  ++ L+ AL K G+  E   ++  M + G +P  VTYN L+ G
Sbjct: 248 FRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDG 307

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +C   +   A  +L  +       N  SYN+++ G CK
Sbjct: 308 YCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCK 345



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 23/198 (11%)

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFG-TLIYGLCLELRVDEALKLKEDIMRVYNVKPD---- 222
           +++A   F+ M + R  P++V F   L Y +  +      L L    M    VKPD    
Sbjct: 47  VDNAVLSFNRMRQIRQTPSIVEFNKILTYLIKTKNHYPTVLSLSTQ-MESKGVKPDLFTL 105

Query: 223 ----------GQ------VFASLIK-GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
                     GQ      VFA ++K GLC  G+++ AL   + ++     ++   Y  LI
Sbjct: 106 SILINCYCHLGQMTFAFSVFAKILKMGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILI 165

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
           + L K G+      +L++++ +    N V Y+ +I G CK++    A+ +  EM  K   
Sbjct: 166 NGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIP 225

Query: 326 ANPISYNVILGGLCKDGK 343
              ++++ ++ G C  GK
Sbjct: 226 PTVVTFSSLIYGFCIVGK 243


>gi|356520989|ref|XP_003529141.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Glycine max]
          Length = 682

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 159/315 (50%), Gaps = 45/315 (14%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERALQMFDEMSSFNVQM-T 117
           ++FDEM++         R V  +++  N+I  GF+ R   + +A +M++ +    +   +
Sbjct: 204 EVFDEMRE---------RGVEPDVVCYNMIIDGFFKRGDFV-KAGEMWERLLREELVFPS 253

Query: 118 VKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILIHGCVVSRRLEDAWKVFD 176
           V  +N +++    CG+     E+++ M+K     D  +Y+ LIHG   +  L  A KV++
Sbjct: 254 VVSYNVMISGLCKCGRFSEGLEIWERMKKNERKCDLFTYSALIHGLSEAGDLGGARKVYE 313

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI-------MRVYNV---------- 219
           EMV R ++P +VT   ++ GLC    V+E  +L E++       +R YN+          
Sbjct: 314 EMVGRGVRPDVVTCNAMLNGLCKAGNVEECFELWEEMGKCSLRNVRSYNIFLKGLFENGK 373

Query: 220 ------------KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK--IEMDAGIYSSLI 265
                       + D   +  ++ GLC  G ++ AL V EE    +  +++D   YSSLI
Sbjct: 374 VDDAMMLWDGLLEADSATYGVVVHGLCWNGYVNRALQVLEEAEHREGGMDVDEFAYSSLI 433

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
           +AL K GR +E   +++ M +RGCK NS   N LI GF K    ++A  +  EM  KGC 
Sbjct: 434 NALCKEGRLDEADGVVELMNKRGCKFNSHVCNVLIDGFVKHSKLDSAVKVFREMSGKGCS 493

Query: 326 ANPISYNVILGGLCK 340
              +SYN+++ GL +
Sbjct: 494 LTVVSYNILINGLLR 508



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 156/349 (44%), Gaps = 21/349 (6%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQ-----LFKNPNPNPNDTEAHPLKPFRYNLLHYDLIIT 55
            P+S++    L R+  DP L L      +     P P D     LK +            
Sbjct: 40  SPSSAVFHHILRRVAADPGLLLAHAPRIIAAIHCPCPEDVPLTLLKAY------------ 87

Query: 56  KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ 115
              + +M +E   +   + H     P    F  ++  +  +    RA   F    +  V 
Sbjct: 88  --AKTRMPNEALHVFQTMPHVFGCSPTIRSFNTLLNAFVESHQWARAENFFKYFEAARVS 145

Query: 116 MTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKV 174
             V+ +N L+      G+ ++ + L   M    +SPD  +Y  LI G   S  L  A +V
Sbjct: 146 PNVETYNVLMKVMCKKGEFEKGRGLLTWMWGAGMSPDRITYGTLIGGVAKSGDLGFALEV 205

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
           FDEM +R ++P +V +  +I G        +A ++ E ++R   V P    +  +I GLC
Sbjct: 206 FDEMRERGVEPDVVCYNMIIDGFFKRGDFVKAGEMWERLLREELVFPSVVSYNVMISGLC 265

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
             G  S  L + E M +++ + D   YS+LI  L +AG       + +EM  RG +P+ V
Sbjct: 266 KCGRFSEGLEIWERMKKNERKCDLFTYSALIHGLSEAGDLGGARKVYEEMVGRGVRPDVV 325

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           T NA+++G CK  + E  F + +EMG K    N  SYN+ L GL ++GK
Sbjct: 326 TCNAMLNGLCKAGNVEECFELWEEMG-KCSLRNVRSYNIFLKGLFENGK 373



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 150/294 (51%), Gaps = 6/294 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+++I+ L +   F E  +I  ++K + R       +  +I     A  L  A ++
Sbjct: 253 SVVSYNVMISGLCKCGRFSEGLEIWERMKKNERKCDL-FTYSALIHGLSEAGDLGGARKV 311

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
           ++EM    V+  V   N +LN     G ++   EL++ M K    +  SYNI + G   +
Sbjct: 312 YEEMVGRGVRPDVVTCNAMLNGLCKAGNVEECFELWEEMGKCSLRNVRSYNIFLKGLFEN 371

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDIMRVYNVKPDGQ 224
            +++DA  ++D +    L+    T+G +++GLC    V+ AL+ L+E   R   +  D  
Sbjct: 372 GKVDDAMMLWDGL----LEADSATYGVVVHGLCWNGYVNRALQVLEEAEHREGGMDVDEF 427

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++SLI  LC  G L  A GV E M +   + ++ + + LI    K  + +    + +EM
Sbjct: 428 AYSSLINALCKEGRLDEADGVVELMNKRGCKFNSHVCNVLIDGFVKHSKLDSAVKVFREM 487

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             +GC    V+YN LI+G  + E F  A+  ++EM +KG K + I+Y+ ++GGL
Sbjct: 488 SGKGCSLTVVSYNILINGLLRAERFREAYDCVNEMLEKGWKPDIITYSTLIGGL 541



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 137/288 (47%), Gaps = 4/288 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKH-DTRIVPKEIIFCNVIGFYGRARLLERALQMFDE 108
           Y +++  L      +   Q+L + +H +  +   E  + ++I    +   L+ A  + + 
Sbjct: 392 YGVVVHGLCWNGYVNRALQVLEEAEHREGGMDVDEFAYSSLINALCKEGRLDEADGVVEL 451

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRR 167
           M+    +      N L++  +   KLD   ++F+ M  K  S    SYNILI+G + + R
Sbjct: 452 MNKRGCKFNSHVCNVLIDGFVKHSKLDSAVKVFREMSGKGCSLTVVSYNILINGLLRAER 511

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
             +A+   +EM+++  +P ++T+ TLI GL     +D AL+L    +   + KPD  ++ 
Sbjct: 512 FREAYDCVNEMLEKGWKPDIITYSTLIGGLYESNMMDAALRLWHQFLDTGH-KPDIIMYN 570

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            +I  LC+ G++  AL +   + R K  ++   +++++   +K G       I   + E 
Sbjct: 571 IVIHRLCSSGKVEDALQLYSTL-RQKKCVNLVTHNTIMEGFYKVGNCEMASKIWAHILED 629

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
             +P+ ++YN  + G C       A   LD+   +G     I++N+++
Sbjct: 630 ELQPDIISYNITLKGLCSCGRVTDAVGFLDDALVRGFLPTAITWNILV 677



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 121/252 (48%), Gaps = 13/252 (5%)

Query: 99  LERALQMFDEMSSFNVQMTVKFF--NTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYN 156
           + RALQ+ +E       M V  F  ++L+N     G+LD    + ++M K      C +N
Sbjct: 405 VNRALQVLEEAEHREGGMDVDEFAYSSLINALCKEGRLDEADGVVELMNK----RGCKFN 460

Query: 157 -----ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
                +LI G V   +L+ A KVF EM  +    T+V++  LI GL    R  EA     
Sbjct: 461 SHVCNVLIDGFVKHSKLDSAVKVFREMSGKGCSLTVVSYNILINGLLRAERFREAYDCVN 520

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           +++     KPD   +++LI GL     +  AL +  + +    + D  +Y+ +I  L  +
Sbjct: 521 EMLE-KGWKPDIITYSTLIGGLYESNMMDAALRLWHQFLDTGHKPDIIMYNIVIHRLCSS 579

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G+  +   +   ++++ C  N VT+N ++ GF K  + E A  I   + +   + + ISY
Sbjct: 580 GKVEDALQLYSTLRQKKC-VNLVTHNTIMEGFYKVGNCEMASKIWAHILEDELQPDIISY 638

Query: 332 NVILGGLCKDGK 343
           N+ L GLC  G+
Sbjct: 639 NITLKGLCSCGR 650



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 138/337 (40%), Gaps = 46/337 (13%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQ 104
           +L  Y  +I  L  A      +++  ++    R V  +++ CN ++    +A  +E   +
Sbjct: 288 DLFTYSALIHGLSEAGDLGGARKVYEEMV--GRGVRPDVVTCNAMLNGLCKAGNVEECFE 345

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           +++EM   +++  V+ +N  L      GK+D   +   + +  +  D+ +Y +++HG   
Sbjct: 346 LWEEMGKCSLR-NVRSYNIFLKGLFENGKVD---DAMMLWDGLLEADSATYGVVVHGLCW 401

Query: 165 SRRLEDAWKVFDEMVKRR--LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
           +  +  A +V +E   R   +      + +LI  LC E R+DEA  + E +M     K +
Sbjct: 402 NGYVNRALQVLEEAEHREGGMDVDEFAYSSLINALCKEGRLDEADGVVE-LMNKRGCKFN 460

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
             V   LI G     +L  A+ V  EM      +    Y+ LI+ L +A R  E    + 
Sbjct: 461 SHVCNVLIDGFVKHSKLDSAVKVFREMSGKGCSLTVVSYNILINGLLRAERFREAYDCVN 520

Query: 283 EMKERGCKPNSVT-----------------------------------YNALISGFCKEE 307
           EM E+G KP+ +T                                   YN +I   C   
Sbjct: 521 EMLEKGWKPDIITYSTLIGGLYESNMMDAALRLWHQFLDTGHKPDIIMYNIVIHRLCSSG 580

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
             E A  +   +  K C  N +++N I+ G  K G C
Sbjct: 581 KVEDALQLYSTLRQKKC-VNLVTHNTIMEGFYKVGNC 616



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/169 (18%), Positives = 85/169 (50%), Gaps = 1/169 (0%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            ++ Y+++I  L RA+ F E    ++++  +    P  I +  +IG    + +++ AL++
Sbjct: 495 TVVSYNILINGLLRAERFREAYDCVNEML-EKGWKPDIITYSTLIGGLYESNMMDAALRL 553

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
           + +      +  +  +N +++   + GK++   +L+  + +    +  ++N ++ G    
Sbjct: 554 WHQFLDTGHKPDIIMYNIVIHRLCSSGKVEDALQLYSTLRQKKCVNLVTHNTIMEGFYKV 613

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
              E A K++  +++  LQP ++++   + GLC   RV +A+   +D +
Sbjct: 614 GNCEMASKIWAHILEDELQPDIISYNITLKGLCSCGRVTDAVGFLDDAL 662



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 3/155 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K ++ +++ Y  +I  L  + M D   ++ HQ   DT   P  I++  VI     +  +E
Sbjct: 525 KGWKPDIITYSTLIGGLYESNMMDAALRLWHQFL-DTGHKPDIIMYNIVIHRLCSSGKVE 583

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
            ALQ++  +        V   NT++      G  +   +++  I+E  + PD  SYNI +
Sbjct: 584 DALQLYSTLRQKKCVNLVTH-NTIMEGFYKVGNCEMASKIWAHILEDELQPDIISYNITL 642

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
            G     R+ DA    D+ + R   PT +T+  L+
Sbjct: 643 KGLCSCGRVTDAVGFLDDALVRGFLPTAITWNILV 677


>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
 gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
          Length = 961

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 138/259 (53%), Gaps = 2/259 (0%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIM 144
           +  +I   G  + L RAL++  EM S  +   V  ++ L+N  +   +LD  ++++ Q++
Sbjct: 279 YTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQML 338

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
           E+  SP+  +YNILI   V   + E+A KV D + K+ +Q  + T+ T+I       + +
Sbjct: 339 EEGCSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPE 398

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           +ALK+ E ++    VKP    + +LI      G++  AL +  +M+R   E +   YSSL
Sbjct: 399 QALKVYEKMLAA-GVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSL 457

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           ISA  KAGR      +  +M +  CKPN VT+N+LI+       +E A  + ++M  +GC
Sbjct: 458 ISACEKAGRWEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGC 517

Query: 325 KANPISYNVILGGLCKDGK 343
           K + I+Y  ++    + G+
Sbjct: 518 KPDSITYCGLITAYERGGQ 536



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 114/252 (45%), Gaps = 43/252 (17%)

Query: 99  LERALQMFDEMSSFNVQMTVK------FFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPD 151
           L+RA+++FD + +      +        + T+++   +  +L R  EL   M  + +  +
Sbjct: 251 LKRAVEIFDWLRNLEPSHELSSLCDLYTYTTMISQCGSHQQLRRALELVAEMRSRGIDCN 310

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +Y+ L++ C+ +  L+ A  V+ +M++    P LVT+  LI       + +EA+K   
Sbjct: 311 VHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVYVKRCQWEEAVK--- 367

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
                                            V + + +  I+ +   Y+++ISA  K+
Sbjct: 368 ---------------------------------VLDTLEKQAIQAEVRTYNTVISACNKS 394

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G+  +   + ++M   G KP++ TY ALIS + K+   E A  I  +M  +GC+ N I+Y
Sbjct: 395 GQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITY 454

Query: 332 NVILGGLCKDGK 343
           + ++    K G+
Sbjct: 455 SSLISACEKAGR 466


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 142/294 (48%), Gaps = 36/294 (12%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           +++++  L RAK   + +++L +L+ D   +P  + + +VI  Y +A  +E A+ ++++M
Sbjct: 272 HNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDM 331

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
            +                                     SP+  +YN+LI+G   +  + 
Sbjct: 332 VAVGT----------------------------------SPNVVTYNVLINGYGKAGNMG 357

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
            A  V+ +M+ RR  P +VTF +LI G C   ++D+A+K+  + M  Y+++P+   F  +
Sbjct: 358 SAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTE-MAQYHIQPNAHTFCII 416

Query: 230 IKGLCAVGELSLALGVKEEM-VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           I   C       AL   ++M +R  I   A IY+ +I  L K G+ +E   IL EM+E+G
Sbjct: 417 IHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKG 476

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           C+P+  TY  LI G C +     A T   +M + GC  + I  N  +  L K G
Sbjct: 477 CRPDKYTYTILIIGHCMKGRIAEAVTFFHKMVETGCSPDSIVVNSFISCLLKSG 530



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 4/248 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYN 156
           +++AL++ + M  F         N L+N      ++ + +E+ + +++     P+  +Y 
Sbjct: 250 VQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYT 309

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            +I G   + R+EDA  V+++MV     P +VT+  LI G      +  A+ + +  M +
Sbjct: 310 SVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQ-MIL 368

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
               PD   F+SLI G C  G+L  A+ +  EM +  I+ +A  +  +I    K  R  E
Sbjct: 369 RRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGE 428

Query: 277 FPAILKEMKERG-CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
               LK+M  R    P +  YN +I   CK    + A  IL EM +KGC+ +  +Y +++
Sbjct: 429 ALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILI 488

Query: 336 GGLCKDGK 343
            G C  G+
Sbjct: 489 IGHCMKGR 496



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 131/296 (44%), Gaps = 2/296 (0%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I+ + ++    +  Q+  Q+   +   P       + G    A LL+ A  +  + 
Sbjct: 130 YRYVISLMCQSGRHTDALQLFDQMTDQSGYFPNARFLSFLSGSCAAAGLLDAAAALLSKA 189

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDACSYNILIHGCVVSRR 167
           S F   +    +N L++  +  G++     LF+  I     SPD  S+N++I G      
Sbjct: 190 SQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGD 249

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           ++ A ++ + M +    P  VT   L+ GLC    V +  ++   + R     P+   + 
Sbjct: 250 VQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYT 309

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           S+I G C  G +  A+ V  +MV      +   Y+ LI+   KAG      A+ ++M  R
Sbjct: 310 SVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILR 369

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            C P+ VT+++LI G+C+    + A  I  EM     + N  ++ +I+   CK  +
Sbjct: 370 RCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNR 425



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 98/231 (42%), Gaps = 37/231 (16%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL-------- 201
           P A SY  +I     S R  DA ++FD+M  +        F + + G C           
Sbjct: 125 PSAHSYRYVISLMCQSGRHTDALQLFDQMTDQSGYFPNARFLSFLSGSCAAAGLLDAAAA 184

Query: 202 ----------------------------RVDEALKLKEDIMRVYNVKPDGQVFASLIKGL 233
                                       RV +A+ L E  ++     PD   F  +IKG+
Sbjct: 185 LLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGV 244

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG-CKPN 292
           C VG++  AL + E M       D   ++ L++ L +A   ++   +L+ ++  G C PN
Sbjct: 245 CKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPN 304

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            VTY ++ISG+CK    E A  + ++M   G   N ++YNV++ G  K G 
Sbjct: 305 VVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGN 355


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 169/368 (45%), Gaps = 73/368 (19%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+   ++++ +L +++  DE   +  ++ +     P EI FC++I   G+   ++ A ++
Sbjct: 411 NVRTVNIMVDRLCKSQKLDEACAMFEEMDYKV-CTPDEITFCSLIDGLGKVGRVDDAYKV 469

Query: 106 FDEM--------SSFNVQMTVKFFN-----------------------TLLNPKLTC--- 131
           +++M        S     +   FFN                        LLN  + C   
Sbjct: 470 YEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFK 529

Query: 132 -GKLDRMKELFQ-IMEKYVSPDACSYNILIHG---------------------CVVSRR- 167
            G+ ++ + +F+ I  +   PDA SY+ILIHG                     CV+  R 
Sbjct: 530 AGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRA 589

Query: 168 -------------LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
                        +  A+++ +EM  +  +PT+VT+G++I GL    R+DEA  L E+  
Sbjct: 590 YNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEE-A 648

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           +   ++ +  +++SLI G   VG +  A  + EE+++  +  +   ++SL+ AL KA   
Sbjct: 649 KSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEI 708

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           NE     + MKE  C PN VTY  LI+G CK   F  AF    EM  +G K + ISY  +
Sbjct: 709 NEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTM 768

Query: 335 LGGLCKDG 342
           + GL K G
Sbjct: 769 ISGLAKAG 776



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 156/346 (45%), Gaps = 40/346 (11%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           ++ EA+ LKP   + + Y  +I  L +A   DE  ++   L+ + R VP    +  +I  
Sbjct: 262 HEIEANGLKP---DEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRR-VPCTYAYNTMIMG 317

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDA 152
           YG A   + A  + +   +     +V  +N +L      GK+D   ++F+ M+K  +P+ 
Sbjct: 318 YGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNL 377

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YNILI     + +L+ A+++ D M K  L P + T   ++  LC   ++DEA  + E+
Sbjct: 378 STYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEE 437

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M      PD   F SLI GL  VG +  A  V E+M+      ++ +Y+SLI   F  G
Sbjct: 438 -MDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHG 496

Query: 273 RKNEFPAILKEMKERGCK-----------------------------------PNSVTYN 297
           RK +   I K+M  + C                                    P++ +Y+
Sbjct: 497 RKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYS 556

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            LI G  K       + +   M ++GC  +  +YN+++ G CK GK
Sbjct: 557 ILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGK 602



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 145/296 (48%), Gaps = 4/296 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ I+T L +    DE  ++  ++K D    P    +  +I    RA  L+ A ++
Sbjct: 342 SVIAYNCILTCLRKMGKVDEALKVFEEMKKDA--APNLSTYNILIDMLCRAGKLDTAFEL 399

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            D M    +   V+  N +++      KLD    +F+ M+ K  +PD  ++  LI G   
Sbjct: 400 RDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGK 459

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R++DA+KV+++M+    +   + + +LI       R ++  K+ +D++   N  PD Q
Sbjct: 460 VGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMIN-QNCSPDLQ 518

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           +  + +  +   GE      + EE+   +   DA  YS LI  L KAG  NE   +   M
Sbjct: 519 LLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSM 578

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           KE+GC  ++  YN +I GFCK      A+ +L+EM  KG +   ++Y  ++ GL K
Sbjct: 579 KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAK 634



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 157/342 (45%), Gaps = 11/342 (3%)

Query: 6   IRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRY--NLLHYDLIITKLGRAKMF 63
           I   C P LQ        +FK   P         +K  R+  +   Y ++I  L +A   
Sbjct: 509 INQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFA 568

Query: 64  DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT 123
           +E  ++ + +K    ++     +  VI  + +   + +A Q+ +EM +   + TV  + +
Sbjct: 569 NETYELFYSMKEQGCVLDTRA-YNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGS 627

Query: 124 LLNPKLTCGKLDRMKELFQIME----KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +++      K+DR+ E + + E    K +  +   Y+ LI G     R+++A+ + +E++
Sbjct: 628 VIDG---LAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELM 684

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           ++ L P L T+ +L+  L     ++EAL   +  M+     P+   +  LI GLC V + 
Sbjct: 685 QKGLTPNLYTWNSLLDALVKAEEINEALVCFQS-MKELKCTPNQVTYGILINGLCKVRKF 743

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
           + A    +EM +  ++     Y+++IS L KAG   E  A+    K  G  P+S  YNA+
Sbjct: 744 NKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAM 803

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           I G         AF++ +E   +G   +  +  V+L  L K+
Sbjct: 804 IEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKN 845



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 140/296 (47%), Gaps = 17/296 (5%)

Query: 49  HYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDE 108
           H D+++T      +F +MQ++ ++        P   +F  +I  + +   ++ AL + DE
Sbjct: 183 HSDMMLT------LFQQMQELGYE--------PTVHLFTTLIRGFAKEGRVDSALSLLDE 228

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRR 167
           M S ++   +  +N  ++     GK+D   + F  +E   + PD  +Y  +I     + R
Sbjct: 229 MKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANR 288

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           L++A ++F+ + K R  P    + T+I G     + DEA  L E   R     P    + 
Sbjct: 289 LDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLER-QRAKGSIPSVIAYN 347

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            ++  L  +G++  AL V EEM +D    +   Y+ LI  L +AG+ +    +   M++ 
Sbjct: 348 CILTCLRKMGKVDEALKVFEEMKKDAAP-NLSTYNILIDMLCRAGKLDTAFELRDSMQKA 406

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G  PN  T N ++   CK +  + A  + +EM  K C  + I++  ++ GL K G+
Sbjct: 407 GLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGR 462



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 127/274 (46%), Gaps = 5/274 (1%)

Query: 72  QLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131
           Q+    +  P    +  +IG +      +  L +F +M     + TV  F TL+      
Sbjct: 157 QMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKE 216

Query: 132 GKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           G++D    L   M+   +  D   YN+ I       +++ AWK F E+    L+P  VT+
Sbjct: 217 GRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTY 276

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
            ++I  LC   R+DEA+++ E + +   V P    + ++I G  + G+   A  + E   
Sbjct: 277 TSMIGVLCKANRLDEAVEMFEHLEKNRRV-PCTYAYNTMIMGYGSAGKFDEAYSLLERQ- 334

Query: 251 RDKIEMDAGI-YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           R K  + + I Y+ +++ L K G+ +E   + +EMK +   PN  TYN LI   C+    
Sbjct: 335 RAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMK-KDAAPNLSTYNILIDMLCRAGKL 393

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + AF + D M   G   N  + N+++  LCK  K
Sbjct: 394 DTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQK 427



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 119/246 (48%), Gaps = 9/246 (3%)

Query: 106 FDEMSSFNVQMTVKFF----NTLLNPKLTCGKLDRMKE---LFQIMEKY-VSPDACSYNI 157
           FD +     +M+V  F    NT +   L C K ++++E   + Q+M K+   P   +Y  
Sbjct: 114 FDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTT 173

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI         +    +F +M +   +PT+  F TLI G   E RVD AL L ++ M+  
Sbjct: 174 LIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDE-MKSS 232

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           ++  D  ++   I     VG++ +A     E+  + ++ D   Y+S+I  L KA R +E 
Sbjct: 233 SLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEA 292

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + + +++    P +  YN +I G+     F+ A+++L+    KG   + I+YN IL  
Sbjct: 293 VEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTC 352

Query: 338 LCKDGK 343
           L K GK
Sbjct: 353 LRKMGK 358



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 9/222 (4%)

Query: 127 PKLTCGKLDRMK------ELFQIMEKYVSPDAC--SYNILIHGCVVSRRLEDAWKVFDEM 178
           P+   G L R+K      E F+  E+      C  SYN L+      R  +   ++  EM
Sbjct: 65  PEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEM 124

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
                 P++ T   ++ G     ++ E   + + +MR +  +P    + +LI    AV  
Sbjct: 125 SVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQ-MMRKFKFRPAFSAYTTLIGAFSAVNH 183

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
             + L + ++M     E    ++++LI    K GR +   ++L EMK      + V YN 
Sbjct: 184 SDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNV 243

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            I  F K    + A+    E+   G K + ++Y  ++G LCK
Sbjct: 244 CIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCK 285


>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           barbata]
          Length = 429

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 139/258 (53%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++  Y R   L    ++   M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 173 PSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 232

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 233 FDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 292

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +K D   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 293 KGDLKQAHDLIDE-MSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDV 351

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP++ TY  +I+ FCK+ D      +L +M
Sbjct: 352 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFCKKGDVWKGSKLLKDM 411

Query: 320 GDKGCKANPISYNVILGG 337
              G   + ++YNV++ G
Sbjct: 412 QRNGHAPSVVTYNVLMNG 429



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 123/225 (54%), Gaps = 2/225 (0%)

Query: 120 FFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
           FFN L++     G +   + +F  + K+ + P   SYN L++G +    L + +++   M
Sbjct: 142 FFNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAM 201

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
           +   +QP + T+  LI GLC E ++D+A +L ++ M V  + P+G  F +LI G C  G 
Sbjct: 202 LASGVQPDVYTYSVLINGLCKESKMDDANELFDE-MLVKGLXPNGVTFTTLIDGHCKNGR 260

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G K + +TY  
Sbjct: 261 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTT 320

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           LI G CKE D +AAF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 321 LIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGR 365



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 131/244 (53%), Gaps = 6/244 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G L+   R+K    ++   V PD  +Y++L
Sbjct: 159 AQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKS--AMLASGVQPDVYTYSVL 216

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G     +++DA ++FDEM+ + L P  VTF TLI G C   RVD A+++ + ++   +
Sbjct: 217 INGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QS 275

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   + +LI GLC  G+L  A  + +EM    ++ D   Y++LI    K G  +   
Sbjct: 276 LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAF 335

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
              K M +   + + V Y ALISG C+E     A  +L EM   G K +  +Y +I+   
Sbjct: 336 EHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEF 395

Query: 339 CKDG 342
           CK G
Sbjct: 396 CKKG 399


>gi|357503117|ref|XP_003621847.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496862|gb|AES78065.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 457

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 155/299 (51%), Gaps = 4/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I    R    D    IL+++K +  I P  + + ++     R  LL+++L +
Sbjct: 41  DIITYNTLIDGYCRFVGIDAAYNILNRMK-EAGINPDVVSYNSLSSGAVRKCLLQKSLDL 99

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEK-YVSPDACSYNILIHGCV 163
           FDEM    ++  V  +N L++     GK +    +F+ I E+  + P   SYN++I+G  
Sbjct: 100 FDEMLQSGIRPDVWSYNILMHCYFRLGKPEEANGVFRDIFERGEIYPSMASYNVMINGLC 159

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            +  + +A  +F  + +R   P ++T+  +I GLC   R+ +A ++  +    +  +P+ 
Sbjct: 160 KNGYVNNALMLFRNLRRRGFVPEVLTYNAMINGLCKARRLADARRVLNEFCD-FGFEPNA 218

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +++K     G L   L +  EM R     D   Y ++++AL K GR  E   I ++
Sbjct: 219 ITYTTVMKCCFRCGRLEQGLEILSEMRRKGFTFDGFAYCTVVAALVKTGRIEEADEIAEK 278

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           M   G  P+  +YN +I+ FC++  F+ A  ++DE+  +G K +  ++ +I+ GLCKDG
Sbjct: 279 MMSNGLVPDLASYNTMINLFCRQGRFDEALRLVDEIEKQGMKCDQYTHTIIIHGLCKDG 337



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 127/265 (47%), Gaps = 3/265 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  I +  +I  Y R   ++ A  + + M    +   V  +N+L +  +    L +  +L
Sbjct: 40  PDIITYNTLIDGYCRFVGIDAAYNILNRMKEAGINPDVVSYNSLSSGAVRKCLLQKSLDL 99

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR-RLQPTLVTFGTLIYGLC 198
           F ++++  + PD  SYNIL+H      + E+A  VF ++ +R  + P++ ++  +I GLC
Sbjct: 100 FDEMLQSGIRPDVWSYNILMHCYFRLGKPEEANGVFRDIFERGEIYPSMASYNVMINGLC 159

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
               V+ AL L  ++ R   V P+   + ++I GLC    L+ A  V  E      E +A
Sbjct: 160 KNGYVNNALMLFRNLRRRGFV-PEVLTYNAMINGLCKARRLADARRVLNEFCDFGFEPNA 218

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y++++   F+ GR  +   IL EM+ +G   +   Y  +++   K    E A  I ++
Sbjct: 219 ITYTTVMKCCFRCGRLEQGLEILSEMRRKGFTFDGFAYCTVVAALVKTGRIEEADEIAEK 278

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M   G   +  SYN ++   C+ G+
Sbjct: 279 MMSNGLVPDLASYNTMINLFCRQGR 303



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 154/341 (45%), Gaps = 17/341 (4%)

Query: 3   TSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKM 62
           + +I + C  RL K P+ A  +F++        E +P      ++  Y+++I  L +   
Sbjct: 114 SYNILMHCYFRLGK-PEEANGVFRDIFERG---EIYP------SMASYNVMINGLCKNGY 163

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
            +    +   L+     VP+ + +  +I    +AR L  A ++ +E   F  +     + 
Sbjct: 164 VNNALMLFRNLRRRG-FVPEVLTYNAMINGLCKARRLADARRVLNEFCDFGFEPNAITYT 222

Query: 123 TLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
           T++     CG+L++  E+   M  K  + D  +Y  ++   V + R+E+A ++ ++M+  
Sbjct: 223 TVMKCCFRCGRLEQGLEILSEMRRKGFTFDGFAYCTVVAALVKTGRIEEADEIAEKMMSN 282

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
            L P L ++ T+I   C + R DEAL+L ++I +   +K D      +I GLC  G    
Sbjct: 283 GLVPDLASYNTMINLFCRQGRFDEALRLVDEIEK-QGMKCDQYTHTIIIHGLCKDGNFEG 341

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           A    + M       +   ++S++  L KAG  ++   +   M+ +    +S TY +L+ 
Sbjct: 342 AEKHLDYMNTLGFGFNLVAFNSILDCLGKAGDIDKAVKVFDSMEVK----DSFTYTSLLH 397

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             C+ + F  A  +L    + G +    +   ++ GL   G
Sbjct: 398 NLCRAKKFRIASKLLVASIEDGFQILRATQRAVIDGLTTSG 438



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 112/224 (50%), Gaps = 3/224 (1%)

Query: 114 VQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAW 172
            +++ KF N  ++      ++ + +  L   ++  ++PD  +YN LI G      ++ A+
Sbjct: 3   TRLSTKFMNITISTMCKSNQIAKAETVLIDGIKLGLNPDIITYNTLIDGYCRFVGIDAAY 62

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
            + + M +  + P +V++ +L  G   +  + ++L L +++++   ++PD   +  L+  
Sbjct: 63  NILNRMKEAGINPDVVSYNSLSSGAVRKCLLQKSLDLFDEMLQS-GIRPDVWSYNILMHC 121

Query: 233 LCAVGELSLALGVKEEMV-RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
              +G+   A GV  ++  R +I      Y+ +I+ L K G  N    + + ++ RG  P
Sbjct: 122 YFRLGKPEEANGVFRDIFERGEIYPSMASYNVMINGLCKNGYVNNALMLFRNLRRRGFVP 181

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
             +TYNA+I+G CK      A  +L+E  D G + N I+Y  ++
Sbjct: 182 EVLTYNAMINGLCKARRLADARRVLNEFCDFGFEPNAITYTTVM 225



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 41/73 (56%)

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           IS + K+ +  +   +L +  + G  P+ +TYN LI G+C+    +AA+ IL+ M + G 
Sbjct: 14  ISTMCKSNQIAKAETVLIDGIKLGLNPDIITYNTLIDGYCRFVGIDAAYNILNRMKEAGI 73

Query: 325 KANPISYNVILGG 337
             + +SYN +  G
Sbjct: 74  NPDVVSYNSLSSG 86



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 1/125 (0%)

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   + +LI G C    +  A  +   M    I  D   Y+SL S   +     +  
Sbjct: 38  LNPDIITYNTLIDGYCRFVGIDAAYNILNRMKEAGINPDVVSYNSLSSGAVRKCLLQKSL 97

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG-CKANPISYNVILGG 337
            +  EM + G +P+  +YN L+  + +    E A  +  ++ ++G    +  SYNV++ G
Sbjct: 98  DLFDEMLQSGIRPDVWSYNILMHCYFRLGKPEEANGVFRDIFERGEIYPSMASYNVMING 157

Query: 338 LCKDG 342
           LCK+G
Sbjct: 158 LCKNG 162


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 140/270 (51%), Gaps = 3/270 (1%)

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           D  I P  I +  +I  Y +   ++ A ++++EM S  ++ ++  +N+LLN      K+ 
Sbjct: 36  DNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMK 95

Query: 136 RMKELFQIM-EKYVSPDACSYNILIHG-CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
              ELF+ M EK   PD  +Y+ +I G C   +  E    +F +M++R      V +  L
Sbjct: 96  EAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNAL 155

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I GLC +  ++ A KL E+ M      PD   + +++ GLC +G++S A    + M    
Sbjct: 156 INGLCKDENIERAYKLLEE-MASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRG 214

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
              D   Y+ L+ AL+K G+ +E   + K++  +G  P++VTYN+++ G  ++ + + A 
Sbjct: 215 YSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAE 274

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +  +M   GC  N  +Y+++L G C+  K
Sbjct: 275 EMFKKMVASGCAPNGATYSIVLSGHCRAKK 304



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 112/196 (57%), Gaps = 2/196 (1%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           SP+  ++ +++       +L D +K+F++M+   + P  + +  LI G   + RVDEA +
Sbjct: 5   SPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANR 64

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           L E+++ V  ++P    + SL+   C   ++  A+ + + M     E D   YS++IS L
Sbjct: 65  LYEEMVSV-GLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGL 123

Query: 269 FKAGRKNE-FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
            K G+  E    +  +M ERGC  N+V YNALI+G CK+E+ E A+ +L+EM  KG   +
Sbjct: 124 CKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPD 183

Query: 328 PISYNVILGGLCKDGK 343
            I+YN IL GLC+ GK
Sbjct: 184 NITYNTILSGLCRMGK 199



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 144/299 (48%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y+ +I  L + +  +   ++L ++      VP  I +  ++    R   +  A Q 
Sbjct: 148 NTVAYNALINGLCKDENIERAYKLLEEMASKG-YVPDNITYNTILSGLCRMGKVSEAKQF 206

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           FD M S      V  +N LL+     GK D   +LF+ ++ K   PD  +YN ++ G   
Sbjct: 207 FDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLAR 266

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +++A ++F +MV     P   T+  ++ G C   +VD+A K+ E++ ++  V PD  
Sbjct: 267 KSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAV-PDVV 325

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  L+ GLC    +  A  +   MV +    D   YS +++ L K  + ++   +   M
Sbjct: 326 TYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRM 385

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ER   P+ VT+N L+ G CK    + A  +LD+M   GC  + ++YN ++ GL K G+
Sbjct: 386 IERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGR 444



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 146/304 (48%), Gaps = 2/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  +++ Y  II+ L +     E  ++L     +       + +  +I    +   +E
Sbjct: 107 KGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIE 166

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
           RA ++ +EM+S         +NT+L+     GK+   K+ F  M  +  SPD  +YN L+
Sbjct: 167 RAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLL 226

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
                  + ++A K+F +++ +   P  VT+ +++ GL  +  +DEA ++ +  M     
Sbjct: 227 DALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKK-MVASGC 285

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+G  ++ ++ G C   ++  A  V EEM +     D   Y+ L+  L K    ++   
Sbjct: 286 APNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHE 345

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +   M + GC P+ V+Y+ +++G CK      A  + D M ++    + +++N+++ GLC
Sbjct: 346 LFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLC 405

Query: 340 KDGK 343
           K GK
Sbjct: 406 KAGK 409



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 153/333 (45%), Gaps = 39/333 (11%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           + Y+++I    +    DE  ++  ++     + P    + +++  + +   ++ A+++F 
Sbjct: 44  IEYNILIDGYAKKGRVDEANRLYEEMVS-VGLEPSIYTYNSLLNAFCKETKMKEAMELFK 102

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF--QIMEKYVSPDACSYNILIHGCVVS 165
            M+    +  V  ++T+++     GK+    E+   +++E+  S +  +YN LI+G    
Sbjct: 103 TMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKD 162

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL-------------------------- 199
             +E A+K+ +EM  +   P  +T+ T++ GLC                           
Sbjct: 163 ENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAY 222

Query: 200 ---------ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
                    E + DEA+KL +D++      PD   + S++ GL     +  A  + ++MV
Sbjct: 223 NGLLDALYKEGKTDEAMKLFKDVI-AKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMV 281

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
                 +   YS ++S   +A + ++   +L+EM + G  P+ VTYN L+ G CK    +
Sbjct: 282 ASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVD 341

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            A  +   M D GC  + +SY+V+L GLCK  K
Sbjct: 342 KAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNK 374



 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 30/57 (52%)

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           R C PN  T+  ++  FCK+      + + ++M D G   + I YN+++ G  K G+
Sbjct: 2   RECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGR 58


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 136/249 (54%), Gaps = 2/249 (0%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDAC 153
           +A  +E+   +F+++  +     V+ ++ L++     G+      +F  M ++  + DA 
Sbjct: 543 KAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDAR 602

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN ++ G   S +L+ A++V +EM  +R+ PT+ T+G++I GL    R+DEA  L E+ 
Sbjct: 603 AYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEE- 661

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
            +   ++ +  V++SLI G   VG +  A  + EEM++  +  +   ++SL+ AL KA  
Sbjct: 662 AKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEE 721

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            NE     + MKE  C PN+ TY+ LI+G C+ + +  AF    EM  +G   N ++Y  
Sbjct: 722 INEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTT 781

Query: 334 ILGGLCKDG 342
           ++ GL K G
Sbjct: 782 MIAGLAKVG 790



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 146/297 (49%), Gaps = 5/297 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           N + Y  +I  LG+    D+  ++   +  DT      +++ ++I  F+   R  E   +
Sbjct: 460 NSVTYCSLIDGLGKKGNVDDAYRLFENM-LDTGHNANPVVYTSLIRNFFMHGRK-EDGHK 517

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV 163
           +F EM+    Q  +   NT ++     G +++ + +F+ ++ Y   PD  SY+ILIHG  
Sbjct: 518 IFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLT 577

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            + +  +   +F  M ++        +  ++ G C   ++D+A ++ E+ M+V  V P  
Sbjct: 578 KAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEE-MKVKRVPPTV 636

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + S+I GL  +  L  A  + EE     IE++  +YSSLI    K GR +E   IL+E
Sbjct: 637 ATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEE 696

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           M ++G  PN  T+N+L+    K E+   A      M +  C  N  +Y++++ GLC+
Sbjct: 697 MMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCR 753



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 138/289 (47%), Gaps = 9/289 (3%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  ++  Y ++I  L +A    E   I H +K     +        V GF    +L ++A
Sbjct: 562 FLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKL-DKA 620

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME----KYVSPDACSYNIL 158
            ++ +EM    V  TV  + ++++      K+DR+ E + + E    K +  +   Y+ L
Sbjct: 621 YEVLEEMKVKRVPPTVATYGSIID---GLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSL 677

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G     R+++A+ + +EM+K+ L P + T+ +L+  L     ++EAL   +  M+   
Sbjct: 678 IDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQS-MKEMK 736

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
             P+   ++ LI GLC V + + A    +EM +  +  +   Y+++I+ L K G   +  
Sbjct: 737 CSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDAC 796

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           ++ +  K  G  P++ ++NALI G         A+ + +E   KGC+ N
Sbjct: 797 SLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKGCRIN 845



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 162/389 (41%), Gaps = 61/389 (15%)

Query: 13  RLQKDPKLALQLF-----KNPNPNPNDTEAHPLKPFRYNL------------LHYDL--- 52
           R  ++P LA   F      +P+P P D     L    ++L            L Y +   
Sbjct: 89  RTLRNPSLAAPFFLASSAASPHPLPADAYNAVLPFLSHDLAAMEKVLEEMSVLGYGVPNP 148

Query: 53  ----IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDE 108
               +++ L R +  D+ ++++  ++   +  P    +  +IG    AR  ERAL++  +
Sbjct: 149 ACADLVSALVRTRRLDDAERVIAAMRR-LKFRPAFSAYTVLIGAMAEARQPERALELLRQ 207

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRR 167
           M     ++ V  F TL+      G+++    L  ++    + PD   YN+ I     +  
Sbjct: 208 MQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGN 267

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           ++ AWK F E+  + L+P  V++ ++I+ LC   R+ EA +L    M      P    + 
Sbjct: 268 VDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQ-METERAVPCAYAYN 326

Query: 228 SLIKGLCAVGELSLA-------------------------LGVKE---------EMVRDK 253
           ++I G  + G+   A                         LG K          E ++  
Sbjct: 327 TMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKD 386

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
            E ++  Y+ +I  L  AG+  E   I  EM+  G  PN +T N ++   CK + FE A+
Sbjct: 387 AEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAY 446

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDG 342
            + +    +GC  N ++Y  ++ GL K G
Sbjct: 447 EMFETASQRGCNPNSVTYCSLIDGLGKKG 475



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 138/299 (46%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y++II  L  A   +E   I  +++H   + P  +    ++    +A+  E A +M
Sbjct: 390 NSSTYNIIIDMLCMAGKVEEAYMIRDEMEH-AGLFPNLLTVNIMVDRLCKAKKFEPAYEM 448

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           F+  S          + +L++     G +D    LF+ +++   + +   Y  LI    +
Sbjct: 449 FETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFM 508

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R ED  K+F EM +R  QP L    T +  +     V++   + EDI + Y   PD +
Sbjct: 509 HGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDI-KGYGFLPDVR 567

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++ LI GL   G+      +   M +    +DA  Y++++    K+G+ ++   +L+EM
Sbjct: 568 SYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEM 627

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           K +   P   TY ++I G  K +  + A+ + +E   KG + N I Y+ ++ G  K G+
Sbjct: 628 KVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGR 686



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 115/241 (47%), Gaps = 2/241 (0%)

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
           ++ +EMS     +       L++  +   +LD  + +   M +    P   +Y +LI   
Sbjct: 133 KVLEEMSVLGYGVPNPACADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAM 192

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             +R+ E A ++  +M +   +  +  F TL+  L  E RV+ AL L +++ +   ++PD
Sbjct: 193 AEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEV-KGSCLEPD 251

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
             ++   I      G + +A     E+    ++ D   Y+S+I  L KAGR +E   +  
Sbjct: 252 IVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFG 311

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +M+     P +  YN +I G+     FE A+ +LD++ ++GC  + +S+N IL  L K  
Sbjct: 312 QMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKR 371

Query: 343 K 343
           K
Sbjct: 372 K 372


>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 418

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 132/244 (54%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y R   L++  ++   M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 169 PSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANEL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++K + P+  ++  LI G   + +++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L  + M +  +KPD   + +LI G C  G+L  A   ++ M+ + I +D  
Sbjct: 289 KGDLKQARNLINE-MSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP+S TY  +I+ FCK+ D      +L EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINEFCKKGDVWTGSKLLKEM 407

Query: 320 GDKG 323
              G
Sbjct: 408 QRDG 411



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 126/228 (55%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G++   + +F  + K+ + P   S+N L++G +    L+  +++ 
Sbjct: 135 SLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
             M    +QP + T+  LI GLC E ++DEA +L  +++    + P+G  F +LI G C 
Sbjct: 195 SAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDK-GLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G++ LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 254 NGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CK+ D E AF     M ++  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGR 361



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/267 (31%), Positives = 134/267 (50%), Gaps = 9/267 (3%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL +    +FD +  + ++ +V  FNTL+N  +  G LD+
Sbjct: 133 PASLYFFNILMHRFCKEGEIRLSQ---SVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDK 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M    V PD  +Y++LI+G     ++++A ++F EM+ + L P  VTF TLI 
Sbjct: 190 GFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   +VD A+++ + ++   ++ PD   + +LI GLC  G+L  A  +  EM    ++
Sbjct: 250 GHCKNGKVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLK 308

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI    K G         K M E   + + V Y ALISG C+E     A  +
Sbjct: 309 PDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
           L EM   G K +  +Y +I+   CK G
Sbjct: 369 LREMLSVGLKPDSGTYTMIINEFCKKG 395



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 112/222 (50%), Gaps = 2/222 (0%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           H + + P    +  +I    +   ++ A ++F EM    +      F TL++     GK+
Sbjct: 198 HASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKV 257

Query: 135 DRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           D   E++ Q++ + +SPD  +YN LI+G      L+ A  + +EM  + L+P  +T+ TL
Sbjct: 258 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTL 317

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G C +  ++ A + ++ ++   N++ D   + +LI GLC  G    A  +  EM+   
Sbjct: 318 IDGSCKDGDLETAFEYRKRMIEE-NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
           ++ D+G Y+ +I+   K G       +LKEM+  G  P+ VT
Sbjct: 377 LKPDSGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 418



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 52/103 (50%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  +E++          ++ L+    K G      ++   +++ G +P+ V++N L+
Sbjct: 119 LVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ ++ D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESK 221


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 158/333 (47%), Gaps = 33/333 (9%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ + + Y  ++  L  AK +++++ +  ++  +   VP E+ F  ++ F+ R  ++ERA
Sbjct: 238 FQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENN-CVPNEVTFDMLVRFFCRGGMVERA 296

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
           +++ D MS           N ++N     G++D   E    M  Y  SPD  SY  ++ G
Sbjct: 297 IEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKG 356

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI-------- 213
              + R EDA ++ +EMV++   P  VTF T I  LC +  +D+A+ L E +        
Sbjct: 357 LCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVG 416

Query: 214 MRVYNV-----------------------KPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
           +  YN                        +P+   + +L+ GLC    L  A  +  EM+
Sbjct: 417 IVTYNALVNGFCVQGRVDSALELFNSLPCEPNTITYTTLLTGLCHAERLDAAAELLAEMM 476

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
           ++   ++   ++ L+S   + G   E   ++++M E GC PN +T+N L+ G  ++ + E
Sbjct: 477 QNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSE 536

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            A  +L  +  KG   + I+Y+ I+  L ++ +
Sbjct: 537 EALELLHGLVSKGISLDTITYSSIVDVLSREDR 569



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 3/223 (1%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           +NTL+      G+LD  + L   M   V PDA +Y  LI G     R+ DA  + D+M++
Sbjct: 108 YNTLVAGYCRYGRLDAARRLIASMP--VPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLR 165

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           R  QP++VT+  L+  +C      +A+K+ ++ MR     P+   +  +I G+C    + 
Sbjct: 166 RECQPSVVTYTVLLEAVCKSSGFGQAMKVLDE-MRAKGCTPNIVTYNVIINGMCREDRVD 224

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  +   +     + D   Y++++  L  A R  +   +  EM E  C PN VT++ L+
Sbjct: 225 DARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLV 284

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             FC+    E A  +LD M + GC AN    N+++  +CK G+
Sbjct: 285 RFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGR 327



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 144/297 (48%), Gaps = 4/297 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           + + Y  ++  L RA  +++ +++L+++       P E+ F   I    +  L+++A+ +
Sbjct: 346 DTISYTTVLKGLCRAGRWEDAKELLNEMVRKN-CPPNEVTFNTFICILCQKGLIDQAILL 404

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
            ++M  +   + +  +N L+N     G++D   ELF  +     P+  +Y  L+ G   +
Sbjct: 405 IEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLP--CEPNTITYTTLLTGLCHA 462

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            RL+ A ++  EM++      +VTF  L+   C +  V+EA++L + +M  +   P+   
Sbjct: 463 ERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMME-HGCTPNLIT 521

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F +L+ G+        AL +   +V   I +D   YSS++  L +  R  E   +   ++
Sbjct: 522 FNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFHAVQ 581

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + G +P +V YN ++S  CK  + + A      M    C  N  +Y +++ GL ++G
Sbjct: 582 DMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIEGLAREG 638



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 139/306 (45%), Gaps = 6/306 (1%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           P+ P  Y   +  LI     R ++ D +  +   L+ + +  P  + +  ++    ++  
Sbjct: 132 PVPPDAYT--YTPLIRGLCDRGRVGDALSLLDDMLRRECQ--PSVVTYTVLLEAVCKSSG 187

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
             +A+++ DEM +      +  +N ++N      ++D  +++   +  Y   PD  SY  
Sbjct: 188 FGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTT 247

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           ++ G   ++R ED   +F EMV+    P  VTF  L+   C    V+ A+++  D M  +
Sbjct: 248 VLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVL-DRMSEH 306

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
               +  +   +I  +C  G +  A      M       D   Y++++  L +AGR  + 
Sbjct: 307 GCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDA 366

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +L EM  + C PN VT+N  I   C++   + A  ++++M + GC    ++YN ++ G
Sbjct: 367 KELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNG 426

Query: 338 LCKDGK 343
            C  G+
Sbjct: 427 FCVQGR 432



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 8/209 (3%)

Query: 135 DRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           D + E  +++E+  S    PD      LI       R  DA +V            +  +
Sbjct: 49  DDLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAY 108

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
            TL+ G C   R+D A +L   +     V PD   +  LI+GLC  G +  AL + ++M+
Sbjct: 109 NTLVAGYCRYGRLDAARRLIASM----PVPPDAYTYTPLIRGLCDRGRVGDALSLLDDML 164

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
           R + +     Y+ L+ A+ K+    +   +L EM+ +GC PN VTYN +I+G C+E+  +
Sbjct: 165 RRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVD 224

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLC 339
            A  IL+ +   G + + +SY  +L GLC
Sbjct: 225 DARQILNRLSSYGFQPDTVSYTTVLKGLC 253



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 4/176 (2%)

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           L +A ++ +    R   P +     LI  LC   R  +A ++            D   + 
Sbjct: 51  LAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLR-TAEGSGAPVDVFAYN 109

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +L+ G C  G L  A  +   M    +  DA  Y+ LI  L   GR  +  ++L +M  R
Sbjct: 110 TLVAGYCRYGRLDAARRLIASM---PVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRR 166

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            C+P+ VTY  L+   CK   F  A  +LDEM  KGC  N ++YNVI+ G+C++ +
Sbjct: 167 ECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDR 222



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
           +S ++ L A  +L+ A  + E         D  + + LI  L + GR ++   +L+  + 
Sbjct: 39  SSRLRRLIARDDLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEG 98

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            G   +   YN L++G+C+    +AA  ++  M       +  +Y  ++ GLC  G+
Sbjct: 99  SGAPVDVFAYNTLVAGYCRYGRLDAARRLIASM---PVPPDAYTYTPLIRGLCDRGR 152


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 164/324 (50%), Gaps = 5/324 (1%)

Query: 21  ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
           AL  +KN N   N       K  R N++ Y+ +I  L     + +  ++L  +  + +I 
Sbjct: 265 ALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI-ERKIN 323

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  +I  + +   L  A +++DEM   ++   +  +++L+N      +LD  K +
Sbjct: 324 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 383

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F++M  K   P+  +YN LI G   ++R+++  ++F EM +R L    VT+ TLI+G   
Sbjct: 384 FELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQ 443

Query: 200 ELRVDEA-LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
               D A +  K+  M    V PD   ++ L+ GLC  G++  AL V E + R K+E D 
Sbjct: 444 ARECDNAQIVFKQ--MVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDI 501

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y+ +I  + KAG+  +   +   +  +G KPN VTY  ++SGFC++   E A  +  E
Sbjct: 502 YTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFRE 561

Query: 319 MGDKGCKANPISYNVILGGLCKDG 342
           M ++G   +  +YN ++    +DG
Sbjct: 562 MKEEGPLPDSGTYNTLIRAHLRDG 585



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 153/299 (51%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y +++  L +    D    +L +++   +I P  +I+  +I      + +  AL +
Sbjct: 220 DLVTYGIVVNGLCKRGDIDLALSLLKKMEQG-KIEPGVVIYNTIIDALCNYKNVNDALNL 278

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           F EM +  ++  V  +N+L+      G+  D  + L  ++E+ ++P+  +++ LI   V 
Sbjct: 279 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 338

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L +A K++DEM+KR + P + T+ +LI G C+  R+DEA  + E +M   +  P+  
Sbjct: 339 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE-LMISKDCFPNVV 397

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LIKG C    +   + +  EM +  +  +   Y++LI   F+A   +    + K+M
Sbjct: 398 TYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQM 457

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  P+ +TY+ L+ G C     E A  + + +     + +  +YN+++ G+CK GK
Sbjct: 458 VSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGK 516



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 155/335 (46%), Gaps = 37/335 (11%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +PF  +++ +  +++ + +   FD +  +  Q++ +  I      +  +I  + R   L 
Sbjct: 76  RPFP-SIVEFSKLLSAIAKMNKFDLVISLGEQMQ-NLGISHNLYTYSILINCFCRRSQLS 133

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILI 159
            AL +  +M     +  +   N+LLN      ++ D +  + Q++E    PD+ ++N LI
Sbjct: 134 LALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLI 193

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR---- 215
           HG     R  +A  + D MV +  QP LVT+G ++ GLC    +D AL L + + +    
Sbjct: 194 HGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIE 253

Query: 216 ----VYN--------------------------VKPDGQVFASLIKGLCAVGELSLALGV 245
               +YN                          ++P+   + SLI+ LC  G  S A  +
Sbjct: 254 PGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRL 313

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
             +M+  KI  +   +S+LI A  K G+  E   +  EM +R   P+  TY++LI+GFC 
Sbjct: 314 LSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 373

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            +  + A  + + M  K C  N ++YN ++ G CK
Sbjct: 374 HDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCK 408



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 142/291 (48%), Gaps = 4/291 (1%)

Query: 54  ITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFN 113
           I +L   K+ D +      +K  +R  P  + F  ++    +    +  + + ++M +  
Sbjct: 54  INRLNDLKLDDAVNLFGDMVK--SRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLG 111

Query: 114 VQMTVKFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAW 172
           +   +  ++ L+N      +L   +  L ++M+    PD  + N L++G     R+ DA 
Sbjct: 112 ISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAV 171

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
            +  +MV+   QP   TF TLI+GL    R  EA+ L  D M V   +PD   +  ++ G
Sbjct: 172 SLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALV-DRMVVKGCQPDLVTYGIVVNG 230

Query: 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
           LC  G++ LAL + ++M + KIE    IY+++I AL      N+   +  EM  +G +PN
Sbjct: 231 LCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPN 290

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            VTYN+LI   C    +  A  +L +M ++    N ++++ ++    K+GK
Sbjct: 291 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 341



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 123/265 (46%), Gaps = 2/265 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    F  +I    R      A+ + D M     Q  +  +  ++N     G +D    L
Sbjct: 184 PDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSL 243

Query: 141 FQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
            + ME+  + P    YN +I      + + DA  +F EM  + ++P +VT+ +LI  LC 
Sbjct: 244 LKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCN 303

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R  +A +L  D++    + P+   F++LI      G+L  A  + +EM++  I+ D  
Sbjct: 304 YGRWSDASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF 362

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YSSLI+      R +E   + + M  + C PN VTYN LI GFCK +  +    +  EM
Sbjct: 363 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREM 422

Query: 320 GDKGCKANPISYNVILGGLCKDGKC 344
             +G   N ++Y  ++ G  +  +C
Sbjct: 423 SQRGLVGNTVTYTTLIHGFFQAREC 447



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 115/232 (49%), Gaps = 10/232 (4%)

Query: 66  MQQILHQLKHDTRIVPKEIIFCNVIGF------YGRARLLERALQMFDEMSSFNVQMTVK 119
           M   L + KH   ++  +  F NV+ +      + +A+ ++  +++F EMS   +     
Sbjct: 373 MHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTV 432

Query: 120 FFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
            + TL++      + D  + +F Q++   V PD  +Y+IL+ G   + ++E A  VF+ +
Sbjct: 433 TYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYL 492

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
            + +++P + T+  +I G+C   +V++   L    + +  VKP+   + +++ G C  G 
Sbjct: 493 QRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCS-LSLKGVKPNVVTYTTMMSGFCRKGL 551

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
              A  +  EM  +    D+G Y++LI A  + G K     +++EM  R C+
Sbjct: 552 KEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREM--RSCR 601


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 132/298 (44%), Gaps = 41/298 (13%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++    + +       + ++M SF +   V   N L+N   +   L+R    
Sbjct: 65  PSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILIN---SFCHLNRPGFA 121

Query: 141 FQIMEKYV----SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           F ++ K +     PD  ++  LI G  V  ++ DA  +FD+M+    QP +VT+GTLI G
Sbjct: 122 FSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLING 181

Query: 197 LCLELRVDEALKL-------------------------KEDIMRVYN---------VKPD 222
           LC     + A++L                            +   +N         + PD
Sbjct: 182 LCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPD 241

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + SLI  LC + E      +  +M+  KI  D  I+S+++ AL K G+  E   ++ 
Sbjct: 242 IFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVD 301

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            M  RG +PN VTYNAL+ G C + + + A  + D M   G   N ISYN ++ G CK
Sbjct: 302 MMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCK 359



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 124/244 (50%), Gaps = 2/244 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
           ++ A+++FD M        V  +NTL+N      ++D+   LF+ M +K + P+  +YN 
Sbjct: 328 MDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNT 387

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L+HG     RL+DA  +F EMV     P L T+  L+  LC +  +DEA+ L + I    
Sbjct: 388 LMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTI-EGS 446

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N+ PD Q++  +I G+C  GEL  A  +   +    +  +   Y+ +I+ L + G  +E 
Sbjct: 447 NMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEA 506

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +  EM   GC P+  TYN +  G  + ++   A  +L EM  +G  A+  +  +++  
Sbjct: 507 NKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEM 566

Query: 338 LCKD 341
           LC D
Sbjct: 567 LCDD 570



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 122/239 (51%), Gaps = 2/239 (0%)

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
           + ++M +  +   V  F+T+++     GK+    ++  +M  + V P+  +YN L+ G  
Sbjct: 264 LLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHC 323

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
           +   +++A KVFD MV     P ++++ TLI G C   R+D+A  L E++ +   + P+ 
Sbjct: 324 LQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQ-KELIPNT 382

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +L+ GLC VG L  A+ +  EMV      D   Y  L+  L K    +E  A+LK 
Sbjct: 383 VTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKT 442

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++     P+   Y  +I G C+  + EAA  I   +  KG + N  +Y +++ GLC+ G
Sbjct: 443 IEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRG 501



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 118/243 (48%), Gaps = 2/243 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIH 160
           AL +FD+M     Q  V  + TL+N     G  +    L + ME+    PD   Y  +I 
Sbjct: 156 ALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIID 215

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                R++ +A+ +F +MV + + P + T+ +LI+ LC          L   ++    + 
Sbjct: 216 SLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMIN-SKIM 274

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD  +F++++  LC  G+++ A  V + M+   +E +   Y++L+         +E   +
Sbjct: 275 PDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKV 334

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
              M   G  PN ++YN LI+G+CK +  + A  + +EM  K    N ++YN ++ GLC 
Sbjct: 335 FDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCH 394

Query: 341 DGK 343
            G+
Sbjct: 395 VGR 397



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 140/302 (46%), Gaps = 3/302 (0%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ N++ Y  +I  L +    +   ++L  ++      P  +++ ++I    + R +  A
Sbjct: 168 FQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQG-NCQPDVVVYTSIIDSLCKDRQVTEA 226

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
             +F +M    +   +  + +L++      +   +  L  Q++   + PD   ++ ++  
Sbjct: 227 FNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDA 286

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                ++ +A  V D M+ R ++P +VT+  L+ G CL+  +DEA+K+  D M      P
Sbjct: 287 LCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVF-DTMVHNGYAP 345

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   + +LI G C +  +  A  + EEM + ++  +   Y++L+  L   GR  +  A+ 
Sbjct: 346 NVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALF 405

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM   G  P+  TY  L+   CK+   + A  +L  +       +   Y +++ G+C+ 
Sbjct: 406 HEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRA 465

Query: 342 GK 343
           G+
Sbjct: 466 GE 467



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 1/174 (0%)

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           L+DA   F+ M+     P+ V F  L+  +    +      L    M  + + PD     
Sbjct: 48  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQ-MDSFGIPPDVYTLN 106

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            LI   C +     A  V  ++++  ++ D   +++LI  L   G+  +   +  +M   
Sbjct: 107 ILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGE 166

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           G +PN VTY  LI+G CK  +  AA  +L  M    C+ + + Y  I+  LCKD
Sbjct: 167 GFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKD 220



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 43/83 (51%)

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
           ++ L++++ K  +     ++  +M   G  P+  T N LI+ FC       AF++L ++ 
Sbjct: 70  FNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKIL 129

Query: 321 DKGCKANPISYNVILGGLCKDGK 343
             G + +  ++  ++ GLC +GK
Sbjct: 130 KLGLQPDTATFTTLIRGLCVEGK 152


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 141/292 (48%), Gaps = 4/292 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+  +  L ++    E  +++  +K D    P  + F  +I    +A  L+ A Q+ DEM
Sbjct: 57  YNFFVHALCKSGKVPEAMEVVKNMK-DGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEM 115

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
                   +  +NTL+N   + G+      + Q M    +PD  +YN +IHG   S  ++
Sbjct: 116 ERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMT--TTPDTQTYNAIIHGFCKSGEID 173

Query: 170 DAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            A+   +EM +R    P   T+  LI GLC    + +A +L ++++   +       F +
Sbjct: 174 RAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNT 233

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ G C   +L  A  +   M+      D   YS++I  L + G  ++  A+L++M  RG
Sbjct: 234 LVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRG 293

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           CKP+ VTY  L++G CK      A  ++  M + GC  N ++Y+++  GLCK
Sbjct: 294 CKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCK 345



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 149/294 (50%), Gaps = 10/294 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           +++ ++ +I  L +A   DE QQ+L +++  +      + +  +I G     R  E  L 
Sbjct: 88  DVVTFNTLIAGLCKAGRLDEAQQVLDEMER-SGFAANLVTYNTLINGLSSAGRSGEAVLV 146

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV--SPDACSYNILIHGC 162
           M    ++ + Q     +N +++     G++DR     + M++    SPD  +Y+ILI+G 
Sbjct: 147 MQGMTTTPDTQT----YNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGL 202

Query: 163 VVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
             S  L  A ++  EM+ R+    ++V F TL+ G C    +D A +L   ++  +   P
Sbjct: 203 CKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLE-HGCAP 261

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   ++++I GLC  G++     + E+MV    + D   Y+ L++ L KAG+  E   ++
Sbjct: 262 DVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLV 321

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           K M E GC PN+VTY+ +  G CK +  + A  +L  + DKG   + +++  +L
Sbjct: 322 KRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLL 375



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 132/277 (47%), Gaps = 5/277 (1%)

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           +L +++    + P   ++   +    ++  +  A+++   M     +  V  FNTL+   
Sbjct: 40  LLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGL 99

Query: 129 LTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
              G+LD  +++   ME+   + +  +YN LI+G   + R  +A  V   M      P  
Sbjct: 100 CKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTT---TPDT 156

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
            T+  +I+G C    +D A    E++ +     PD   ++ LI GLC    L  A  + +
Sbjct: 157 QTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQ 216

Query: 248 EMV-RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           EM+ R         +++L+    KA   +    +L  M E GC P+ VTY+ +I G C+ 
Sbjct: 217 EMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRC 276

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            D +  F +L++M  +GCK + ++Y V++ GLCK GK
Sbjct: 277 GDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGK 313



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 1/123 (0%)

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRD-KIEMDAGIYSSLISALFKAGRKNEFPAI 280
           D   +  L++  C  GEL  A+ +  EM +   +     +Y+  + AL K+G+  E   +
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +K MK+  CKP+ VT+N LI+G CK    + A  +LDEM   G  AN ++YN ++ GL  
Sbjct: 77  VKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSS 136

Query: 341 DGK 343
            G+
Sbjct: 137 AGR 139



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 33/185 (17%)

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           T+  L+   CL   +  A+ L  ++ +   + P   ++   +  LC  G++  A+ V + 
Sbjct: 20  TYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKN 79

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN----------- 297
           M     + D   +++LI+ L KAGR +E   +L EM+  G   N VTYN           
Sbjct: 80  MKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGR 139

Query: 298 ---------------------ALISGFCKEEDFEAAFTILDEMGDK-GCKANPISYNVIL 335
                                A+I GFCK  + + A+  L+EM  + GC  +  +Y++++
Sbjct: 140 SGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILI 199

Query: 336 GGLCK 340
            GLCK
Sbjct: 200 NGLCK 204


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 130/270 (48%), Gaps = 24/270 (8%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL------NPKLTCGKL-------DRM 137
           G Y    ++ R LQ  D++        VKFF+         + K TC  L        + 
Sbjct: 94  GGYLVPSVVGRVLQQLDDLDK-----AVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKA 148

Query: 138 KELFQIMEKY----VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           +E + + + +     SPD+ +Y+ LI+G   +R  + A+++ DEM KR + P    + T+
Sbjct: 149 QEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTI 208

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I GLC   RVD AL    D+ R  N  P    +  L+  LC    +S A  + E+M+   
Sbjct: 209 IKGLCDNGRVDSALVHYRDMQR--NCAPSVITYTILVDALCKSARISDASLILEDMIEAG 266

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
              +   Y++LI+   K G  +E   +  +M E  C P+  TYN LI G+CK+E  +   
Sbjct: 267 CAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGA 326

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +L EM   GC+ N I+YN ++  L K GK
Sbjct: 327 KLLQEMVKYGCEPNFITYNTLMDSLVKSGK 356



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 153/300 (51%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y+++I+   RA   D+ +Q+L ++  +    P  + + +++    +A  ++ A ++
Sbjct: 410 DIYTYNIMISGACRANRIDDARQLLERMT-EAGCPPDVVTYNSIVSGLCKASQVDEAYEV 468

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHGCVV 164
           ++ + +    + V   +TL++      +LD  ++L + ME+  S PD  +Y ILIHG   
Sbjct: 469 YEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCK 528

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV-DEALKLKEDIMRVYNVKPDG 223
           + +L+ +   F EM+ +   PT++T+  +I  LC   RV D  + LK  + R   V PD 
Sbjct: 529 ADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLER--GVTPDA 586

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
            V+ S+I GLC       A  + + M +         Y+ L+  L K  R +E   +L+ 
Sbjct: 587 IVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEV 646

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M+  GC P++VTYN++  GF K  + + AF +   M  +GC   P  Y+++L  L  + K
Sbjct: 647 MESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEK 706



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 131/260 (50%), Gaps = 1/260 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  I +  +I  + +AR  ++A ++ DEM    +      +NT++      G++D     
Sbjct: 165 PDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVH 224

Query: 141 FQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
           ++ M++  +P   +Y IL+     S R+ DA  + ++M++    P +VT+ TLI G C  
Sbjct: 225 YRDMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKL 284

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
             +DEA+ L   ++   +  PD   +  LI G C          + +EMV+   E +   
Sbjct: 285 GNMDEAVVLFNQMLE-NSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFIT 343

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
           Y++L+ +L K+G+  +   + + M  R CKP+  T+N +I  FCK    + A+ +   M 
Sbjct: 344 YNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMT 403

Query: 321 DKGCKANPISYNVILGGLCK 340
           D+GC  +  +YN+++ G C+
Sbjct: 404 DRGCLPDIYTYNIMISGACR 423



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 139/292 (47%), Gaps = 4/292 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ II  L      D    ++H         P  I +  ++    ++  +  A  + ++M
Sbjct: 205 YNTIIKGLCDNGRVD--SALVHYRDMQRNCAPSVITYTILVDALCKSARISDASLILEDM 262

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
                   V  +NTL+N     G +D    LF Q++E   SPD  +YNILI G     R 
Sbjct: 263 IEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERP 322

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           +D  K+  EMVK   +P  +T+ TL+  L    +  +A  L + ++R  + KP    F  
Sbjct: 323 QDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLR-RDCKPSHFTFNL 381

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I   C VG+L LA  + + M       D   Y+ +IS   +A R ++   +L+ M E G
Sbjct: 382 MIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAG 441

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           C P+ VTYN+++SG CK    + A+ + + + + G   + ++ + ++ GLCK
Sbjct: 442 CPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCK 493



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 141/299 (47%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ +I    +    DE   + +Q+  ++   P    +  +I  Y +    +   ++
Sbjct: 270 NVVTYNTLINGFCKLGNMDEAVVLFNQMLENS-CSPDVFTYNILIDGYCKQERPQDGAKL 328

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
             EM  +  +     +NTL++  +  GK      L Q+M  +   P   ++N++I     
Sbjct: 329 LQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCK 388

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L+ A+++F  M  R   P + T+  +I G C   R+D+A +L E +       PD  
Sbjct: 389 VGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEA-GCPPDVV 447

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + S++ GLC   ++  A  V E +      +D    S+LI  L K+ R ++   +L+EM
Sbjct: 448 TYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREM 507

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  G  P+ V Y  LI GFCK +  + +     EM DKGC    I+Y++++  LCK  +
Sbjct: 508 ERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSAR 566



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 146/335 (43%), Gaps = 40/335 (11%)

Query: 46  NLLHYDLIITKLGRA-KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           N + Y+ ++  L ++ K  D        L+ D +  P    F  +I  + +   L+ A +
Sbjct: 340 NFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCK--PSHFTFNLMIDMFCKVGQLDLAYE 397

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
           +F  M+       +  +N +++      ++D  ++L + M E    PD  +YN ++ G  
Sbjct: 398 LFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLC 457

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            + ++++A++V++ +        +VT  TLI GLC   R+D+A KL  ++ R     PD 
Sbjct: 458 KASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMER-NGSAPDV 516

Query: 224 QVFASLIKGLCAVGELSLALGVKEEM------------------------VRDK------ 253
             +  LI G C   +L  +L    EM                        VRD       
Sbjct: 517 VAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKT 576

Query: 254 -----IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
                +  DA +Y+S+I  L K+   +E   + K MK+ GC P  VTYN L+   CK   
Sbjct: 577 MLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSR 636

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + A  +L+ M   GC  + ++YN +  G  K  +
Sbjct: 637 LDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAE 671


>gi|110289270|gb|ABG66143.1| expressed protein [Oryza sativa Japonica Group]
 gi|125575153|gb|EAZ16437.1| hypothetical protein OsJ_31906 [Oryza sativa Japonica Group]
          Length = 829

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 141/253 (55%), Gaps = 8/253 (3%)

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP-KLTCGKLDRMKELFQIMEKY-VSP 150
           Y RA+++  AL +  +MSS N+Q++V  +++LL+  ++T    D   ELF+ ME   VSP
Sbjct: 179 YARAQMVHDALYVLSKMSSLNMQISVFTYDSLLHGLRMT----DVALELFEEMESCGVSP 234

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKR-RLQPTLVTFGTLIYGLCLELRVDEALKL 209
              S++I+I+G     ++ +A     E  K  + +P  +TF  L+  LC    V  A K 
Sbjct: 235 SEYSHSIIINGLCKQDKVGEALSFLQEARKEGKFKPLGMTFNILMSALCNWGFVQSA-KS 293

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
              +M  Y + PD   F++LI GLC VG +  AL + E + ++ +E++   Y+SLI+   
Sbjct: 294 FLCLMLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYNSLINGYR 353

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
             G   E P I++ M+ +G +P+ VTY  LI+G C+  D E    +  ++ D+G + N +
Sbjct: 354 LLGLTKEIPKIIQMMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVLDQGLQLNIV 413

Query: 330 SYNVILGGLCKDG 342
           +Y+V+L  L K G
Sbjct: 414 TYSVLLNALFKKG 426



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 158/308 (51%), Gaps = 10/308 (3%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +  + N++ Y +++  L +  MF E+  +L ++ ++  +    I +  +I  Y +   +E
Sbjct: 406 QGLQLNIVTYSVLLNALFKKGMFCEIDNLLGEI-YNIGLDMDVIAYSILIHGYCKLGEIE 464

Query: 101 RALQMFDEMSSFNVQM--TVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL 158
           +ALQ+ + M S    M  ++  F+ LL        ++    L  +  KY   D   YN++
Sbjct: 465 KALQVCNAMCSSQRVMPTSLNHFSILLGLCKKGLLVEARWYLENVARKYQPTDVVFYNVV 524

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G      + +A +++D++    + PT+VT  +L+YG C   ++ + L+L E   R   
Sbjct: 525 IDGYAKLGDIVNAVRLYDQITVAGMHPTIVTCNSLLYGYC---KIGD-LQLAESYFRAIQ 580

Query: 219 VK---PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
           +    P    + +L+  L   GE++  L + +EMV  +I+ +A  YS ++  L K  R +
Sbjct: 581 LSGLLPTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIVKGLCKQLRFD 640

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E   +LK+M  +G   + +TYN LI GFC+ E+ + AF I D M  +G    P++YN+++
Sbjct: 641 EAINVLKDMDSKGINADPITYNTLIQGFCESENVQMAFHIHDIMLCRGLVPTPVTYNLLI 700

Query: 336 GGLCKDGK 343
             LC  GK
Sbjct: 701 NVLCLKGK 708



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 104/200 (52%), Gaps = 2/200 (1%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           FN L++     G +   K    +M KY + PD  +++ LIHG      +E+A  +F+ + 
Sbjct: 275 FNILMSALCNWGFVQSAKSFLCLMLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVT 334

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           K  ++  +VT+ +LI G  L     E  K+ + +MR   V+PD   +  LI G C  G++
Sbjct: 335 KEGMELEIVTYNSLINGYRLLGLTKEIPKIIQ-MMRGQGVEPDLVTYTILIAGHCESGDV 393

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
              + V+++++   ++++   YS L++ALFK G   E   +L E+   G   + + Y+ L
Sbjct: 394 EEGMKVRKDVLDQGLQLNIVTYSVLLNALFKKGMFCEIDNLLGEIYNIGLDMDVIAYSIL 453

Query: 300 ISGFCKEEDFEAAFTILDEM 319
           I G+CK  + E A  + + M
Sbjct: 454 IHGYCKLGEIEKALQVCNAM 473



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 125/268 (46%), Gaps = 7/268 (2%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           +VP    F  +I    +   +E AL +F+ ++   +++ +  +N+L+N     G    + 
Sbjct: 303 LVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYNSLINGYRLLGLTKEIP 362

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           ++ Q+M  + V PD  +Y ILI G   S  +E+  KV  +++ + LQ  +VT+  L+  L
Sbjct: 363 KIIQMMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVLDQGLQLNIVTYSVLLNAL 422

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFAS--LIKGLCAVGELSLALGVKEEMVRDKIE 255
               +     ++   +  +YN+  D  V A   LI G C +GE+  AL V   M   +  
Sbjct: 423 ---FKKGMFCEIDNLLGEIYNIGLDMDVIAYSILIHGYCKLGEIEKALQVCNAMCSSQRV 479

Query: 256 MDAGI-YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           M   + + S++  L K G   E    L+ +  +    + V YN +I G+ K  D   A  
Sbjct: 480 MPTSLNHFSILLGLCKKGLLVEARWYLENVARKYQPTDVVFYNVVIDGYAKLGDIVNAVR 539

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDG 342
           + D++   G     ++ N +L G CK G
Sbjct: 540 LYDQITVAGMHPTIVTCNSLLYGYCKIG 567



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 127/300 (42%), Gaps = 38/300 (12%)

Query: 81  PKEIIFCNV-IGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P +++F NV I  Y +   +  A++++D+++   +  T+   N+LL      G L   + 
Sbjct: 515 PTDVVFYNVVIDGYAKLGDIVNAVRLYDQITVAGMHPTIVTCNSLLYGYCKIGDLQLAES 574

Query: 140 LFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            F+ ++   + P A +Y  L+     +  +     +FDEMV +R++   VT+  ++ GLC
Sbjct: 575 YFRAIQLSGLLPTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIVKGLC 634

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
            +LR DEA+ + +D M    +  D   + +LI+G C    + +A  + + M+   +    
Sbjct: 635 KQLRFDEAINVLKD-MDSKGINADPITYNTLIQGFCESENVQMAFHIHDIMLCRGLVPTP 693

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI------------------ 300
             Y+ LI+ L   G+  +   +L+ ++E G K     Y  LI                  
Sbjct: 694 VTYNLLINVLCLKGKVIQAEILLESLRENGIKLRKFAYTTLIKAQCAKGMPINAVLLVGK 753

Query: 301 -----------------SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
                            +  CK +  + AF  +  M   G   +   Y V+   L K+ +
Sbjct: 754 LLDAGFEASIEDFSAAINRLCKRQFAKEAFMFVPIMLSVGIYPDTQIYCVLGRALQKNSE 813



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 8/225 (3%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           ++P  + +  ++     A  +   L +FDEM +  ++     ++ ++  K  C +L R  
Sbjct: 584 LLPTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIV--KGLCKQL-RFD 640

Query: 139 ELFQIME----KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           E   +++    K ++ D  +YN LI G   S  ++ A+ + D M+ R L PT VT+  LI
Sbjct: 641 EAINVLKDMDSKGINADPITYNTLIQGFCESENVQMAFHIHDIMLCRGLVPTPVTYNLLI 700

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
             LCL+ +V +A  L E  +R   +K     + +LIK  CA G    A+ +  +++    
Sbjct: 701 NVLCLKGKVIQAEILLES-LRENGIKLRKFAYTTLIKAQCAKGMPINAVLLVGKLLDAGF 759

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
           E     +S+ I+ L K     E    +  M   G  P++  Y  L
Sbjct: 760 EASIEDFSAAINRLCKRQFAKEAFMFVPIMLSVGIYPDTQIYCVL 804


>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 418

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 125/228 (54%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
             M    +QP + T+  LI GLC E ++DEA KL ++++    + P+G  F +LI G C 
Sbjct: 195 SAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLD-RGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G+L LA+ + ++M+      D   Y++LI  L K G   +   +  EM  +G KP+ +T
Sbjct: 254 NGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + +SY  ++ GLCK+G+
Sbjct: 314 YTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGR 361



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 130/250 (52%), Gaps = 5/250 (2%)

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDA 152
           G  RL   A  +FD ++ + ++ +V  FNTL+N  +  G LD    L   M    V PD 
Sbjct: 150 GEIRL---AQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDV 206

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +Y++LI+G     ++++A K+FDEM+ R L P  VTF TLI G C   ++D A+++ + 
Sbjct: 207 YTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQ 266

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           ++      PD   + +LI GLC  G+L  A  + +EM    ++ D   Y++LI    K G
Sbjct: 267 MLS-QGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEG 325

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
                    K M +   + + V+Y ALISG CKE     A  +L EM   G K +  +Y 
Sbjct: 326 DLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYT 385

Query: 333 VILGGLCKDG 342
           +++   CK+G
Sbjct: 386 IVMHEFCKNG 395



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 109/222 (49%), Gaps = 2/222 (0%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           H + + P    +  +I    +   ++ A ++FDEM    +      F TL++     GKL
Sbjct: 198 HASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKL 257

Query: 135 DRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           D   E++ Q++ +  SPD  +YN LI+G      L  A  + DEM  + L+P  +T+ TL
Sbjct: 258 DLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTL 317

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G C E  ++ A + ++ +++  N++ D   + +LI GLC  G    A  +  EM+   
Sbjct: 318 IDGSCKEGDLETAFEYRKRMIKE-NIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVG 376

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
           ++ D G Y+ ++    K G       +LKEM+  G  P  +T
Sbjct: 377 LKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGHVPCVIT 418


>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
           [Burroughsia fastigiata]
          Length = 431

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 140/258 (54%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++  Y R   L+   ++   M +  V   V  ++ L+N      K+D   EL
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANEL 234

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 294

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  +++A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 295 KGDLNQAHDLIDE-MSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDV 353

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +++EM   G KP++ TY  +I+  CK+ D      +L EM
Sbjct: 354 AYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSKLLKEM 413

Query: 320 GDKGCKANPISYNVILGG 337
              G   + ++YNV++ G
Sbjct: 414 QXDGHAPSVVTYNVLMNG 431



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 123/228 (53%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L +     G +   + +F  + K+ + P   SYN L++G +    L++ +K+ 
Sbjct: 141 SLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLK 200

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
             M    + P + T+  LI GLC E ++D A +L ++ M V  + P+G  F +LI G C 
Sbjct: 201 SAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDE-MLVKGLVPNGVTFTTLIDGHCK 259

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G  N+   ++ EM  +G KP+ +T
Sbjct: 260 NGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKIT 319

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D + AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 320 YTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGR 367



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 139/264 (52%), Gaps = 3/264 (1%)

Query: 81  PKEIIFCNVIGF-YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F N++   + +   +  A  +FD ++ + ++ +V  +NTL+N  +  G LD   +
Sbjct: 139 PASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFK 198

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L   M    V PD  +Y++LI+G     +++ A ++FDEM+ + L P  VTF TLI G C
Sbjct: 199 LKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              RVD A+++ + ++   ++ PD   + +LI GLC  G+L+ A  + +EM    ++ D 
Sbjct: 259 KNGRVDLAMEIYKQMLS-QSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDK 317

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y++LI    K G  +      K M +   + + V Y ALISG C+E     A  ++ E
Sbjct: 318 ITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMRE 377

Query: 319 MGDKGCKANPISYNVILGGLCKDG 342
           M   G K +  +Y +I+  +CK G
Sbjct: 378 MLSVGLKPDTGTYTMIINEVCKKG 401



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 47/103 (45%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE +          ++ L     K G      ++   + + G +P+ V+YN L+
Sbjct: 125 LVWGFYEEFLECGYPASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G   +  +Y+V++ GLCK+ K
Sbjct: 185 NGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESK 227


>gi|10140738|gb|AAG13570.1|AC037425_1 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 811

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 141/253 (55%), Gaps = 8/253 (3%)

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP-KLTCGKLDRMKELFQIMEKY-VSP 150
           Y RA+++  AL +  +MSS N+Q++V  +++LL+  ++T    D   ELF+ ME   VSP
Sbjct: 161 YARAQMVHDALYVLSKMSSLNMQISVFTYDSLLHGLRMT----DVALELFEEMESCGVSP 216

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKR-RLQPTLVTFGTLIYGLCLELRVDEALKL 209
              S++I+I+G     ++ +A     E  K  + +P  +TF  L+  LC    V  A K 
Sbjct: 217 SEYSHSIIINGLCKQDKVGEALSFLQEARKEGKFKPLGMTFNILMSALCNWGFVQSA-KS 275

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
              +M  Y + PD   F++LI GLC VG +  AL + E + ++ +E++   Y+SLI+   
Sbjct: 276 FLCLMLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYNSLINGYR 335

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
             G   E P I++ M+ +G +P+ VTY  LI+G C+  D E    +  ++ D+G + N +
Sbjct: 336 LLGLTKEIPKIIQMMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVLDQGLQLNIV 395

Query: 330 SYNVILGGLCKDG 342
           +Y+V+L  L K G
Sbjct: 396 TYSVLLNALFKKG 408



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 158/308 (51%), Gaps = 10/308 (3%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +  + N++ Y +++  L +  MF E+  +L ++ ++  +    I +  +I  Y +   +E
Sbjct: 388 QGLQLNIVTYSVLLNALFKKGMFCEIDNLLGEI-YNIGLDMDVIAYSILIHGYCKLGEIE 446

Query: 101 RALQMFDEMSSFNVQM--TVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL 158
           +ALQ+ + M S    M  ++  F+ LL        ++    L  +  KY   D   YN++
Sbjct: 447 KALQVCNAMCSSQRVMPTSLNHFSILLGLCKKGLLVEARWYLENVARKYQPTDVVFYNVV 506

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G      + +A +++D++    + PT+VT  +L+YG C   ++ + L+L E   R   
Sbjct: 507 IDGYAKLGDIVNAVRLYDQITVAGMHPTIVTCNSLLYGYC---KIGD-LQLAESYFRAIQ 562

Query: 219 VK---PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
           +    P    + +L+  L   GE++  L + +EMV  +I+ +A  YS ++  L K  R +
Sbjct: 563 LSGLLPTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIVKGLCKQLRFD 622

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E   +LK+M  +G   + +TYN LI GFC+ E+ + AF I D M  +G    P++YN+++
Sbjct: 623 EAINVLKDMDSKGINADPITYNTLIQGFCESENVQMAFHIHDIMLCRGLVPTPVTYNLLI 682

Query: 336 GGLCKDGK 343
             LC  GK
Sbjct: 683 NVLCLKGK 690



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 104/200 (52%), Gaps = 2/200 (1%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           FN L++     G +   K    +M KY + PD  +++ LIHG      +E+A  +F+ + 
Sbjct: 257 FNILMSALCNWGFVQSAKSFLCLMLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVT 316

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           K  ++  +VT+ +LI G  L     E  K+ + +MR   V+PD   +  LI G C  G++
Sbjct: 317 KEGMELEIVTYNSLINGYRLLGLTKEIPKIIQ-MMRGQGVEPDLVTYTILIAGHCESGDV 375

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
              + V+++++   ++++   YS L++ALFK G   E   +L E+   G   + + Y+ L
Sbjct: 376 EEGMKVRKDVLDQGLQLNIVTYSVLLNALFKKGMFCEIDNLLGEIYNIGLDMDVIAYSIL 435

Query: 300 ISGFCKEEDFEAAFTILDEM 319
           I G+CK  + E A  + + M
Sbjct: 436 IHGYCKLGEIEKALQVCNAM 455



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 125/268 (46%), Gaps = 7/268 (2%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           +VP    F  +I    +   +E AL +F+ ++   +++ +  +N+L+N     G    + 
Sbjct: 285 LVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYNSLINGYRLLGLTKEIP 344

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           ++ Q+M  + V PD  +Y ILI G   S  +E+  KV  +++ + LQ  +VT+  L+  L
Sbjct: 345 KIIQMMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVLDQGLQLNIVTYSVLLNAL 404

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFAS--LIKGLCAVGELSLALGVKEEMVRDKIE 255
               +     ++   +  +YN+  D  V A   LI G C +GE+  AL V   M   +  
Sbjct: 405 ---FKKGMFCEIDNLLGEIYNIGLDMDVIAYSILIHGYCKLGEIEKALQVCNAMCSSQRV 461

Query: 256 MDAGI-YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           M   + + S++  L K G   E    L+ +  +    + V YN +I G+ K  D   A  
Sbjct: 462 MPTSLNHFSILLGLCKKGLLVEARWYLENVARKYQPTDVVFYNVVIDGYAKLGDIVNAVR 521

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDG 342
           + D++   G     ++ N +L G CK G
Sbjct: 522 LYDQITVAGMHPTIVTCNSLLYGYCKIG 549



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 127/300 (42%), Gaps = 38/300 (12%)

Query: 81  PKEIIFCNV-IGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P +++F NV I  Y +   +  A++++D+++   +  T+   N+LL      G L   + 
Sbjct: 497 PTDVVFYNVVIDGYAKLGDIVNAVRLYDQITVAGMHPTIVTCNSLLYGYCKIGDLQLAES 556

Query: 140 LFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            F+ ++   + P A +Y  L+     +  +     +FDEMV +R++   VT+  ++ GLC
Sbjct: 557 YFRAIQLSGLLPTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIVKGLC 616

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
            +LR DEA+ + +D M    +  D   + +LI+G C    + +A  + + M+   +    
Sbjct: 617 KQLRFDEAINVLKD-MDSKGINADPITYNTLIQGFCESENVQMAFHIHDIMLCRGLVPTP 675

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI------------------ 300
             Y+ LI+ L   G+  +   +L+ ++E G K     Y  LI                  
Sbjct: 676 VTYNLLINVLCLKGKVIQAEILLESLRENGIKLRKFAYTTLIKAQCAKGMPINAVLLVGK 735

Query: 301 -----------------SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
                            +  CK +  + AF  +  M   G   +   Y V+   L K+ +
Sbjct: 736 LLDAGFEASIEDFSAAINRLCKRQFAKEAFMFVPIMLSVGIYPDTQIYCVLGRALQKNSE 795



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 8/225 (3%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           ++P  + +  ++     A  +   L +FDEM +  ++     ++ ++  K  C +L R  
Sbjct: 566 LLPTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIV--KGLCKQL-RFD 622

Query: 139 ELFQIME----KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           E   +++    K ++ D  +YN LI G   S  ++ A+ + D M+ R L PT VT+  LI
Sbjct: 623 EAINVLKDMDSKGINADPITYNTLIQGFCESENVQMAFHIHDIMLCRGLVPTPVTYNLLI 682

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
             LCL+ +V +A  L E  +R   +K     + +LIK  CA G    A+ +  +++    
Sbjct: 683 NVLCLKGKVIQAEILLES-LRENGIKLRKFAYTTLIKAQCAKGMPINAVLLVGKLLDAGF 741

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
           E     +S+ I+ L K     E    +  M   G  P++  Y  L
Sbjct: 742 EASIEDFSAAINRLCKRQFAKEAFMFVPIMLSVGIYPDTQIYCVL 786


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 155/305 (50%), Gaps = 5/305 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV-PKEIIFCNVIGFYGRARLL 99
           + F+ N + Y  +I   G  K+ D    I    K D R+  P  +++  +I    + +L+
Sbjct: 158 QGFQLNQVSYGTLIN--GVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLV 215

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNIL 158
             A  +F EM+   +   V  ++TL+      GKL + +  L +++ K ++P+  +YNIL
Sbjct: 216 SEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNIL 275

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           +       ++++A  V   M+K  ++P ++T+ TL+ G  L   V +A  +  + M +  
Sbjct: 276 VDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVF-NAMSLMG 334

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V PD   +  LI G C    +  AL + +EM +  +      YSSLI  L K+GR     
Sbjct: 335 VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVW 394

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            ++ EM +RG   N +TY++LI G CK    + A  + ++M D+G + N  ++ ++L GL
Sbjct: 395 DLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGL 454

Query: 339 CKDGK 343
           CK G+
Sbjct: 455 CKGGR 459



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 146/300 (48%), Gaps = 7/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERAL 103
           N++ Y  II  L + ++  E   +  ++    + +  +++  + +  GF    +L E A+
Sbjct: 198 NVVMYSTIIDALCKYQLVSEAYGLFSEMT--VKGISADVVTYSTLIYGFCIEGKLKE-AI 254

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
            + +EM    +   V  +N L++     GK+   K +  +M K  V PD  +Y+ L+ G 
Sbjct: 255 GLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGY 314

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
            +   ++ A  VF+ M    + P + T+  LI G C    VDEAL L ++ M   N+ P 
Sbjct: 315 FLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKE-MHQKNMVPG 373

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              ++SLI GLC  G +     + +EM       +   YSSLI  L K G  +   A+  
Sbjct: 374 IVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFN 433

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +MK++G +PN+ T+  L+ G CK    + A  +  ++  KG   N  +YNV++ G CK G
Sbjct: 434 KMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQG 493



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 122/244 (50%), Gaps = 8/244 (3%)

Query: 107 DEMSSFNVQMTVKF------FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
           D +S FN  + ++       FN +L+             L   +E K + PD  + NILI
Sbjct: 42  DAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILI 101

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +      ++   + V  +++KR   P  VT  TLI GLCL+ +V +AL   + ++     
Sbjct: 102 NCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLL-AQGF 160

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           + +   + +LI G+C +G+   A+ + +++     + +  +YS++I AL K    +E   
Sbjct: 161 QLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYG 220

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +  EM  +G   + VTY+ LI GFC E   + A  +L+EM  K    N  +YN+++  LC
Sbjct: 221 LFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALC 280

Query: 340 KDGK 343
           K+GK
Sbjct: 281 KEGK 284



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 127/270 (47%), Gaps = 3/270 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LK    N+  Y++++  L +     E + +L  +     + P  I +  ++  Y     +
Sbjct: 262 LKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKAC-VKPDVITYSTLMDGYFLVYEV 320

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           ++A  +F+ MS   V   V  +  L+N       +D    LF+ M +K + P   +Y+ L
Sbjct: 321 KKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSL 380

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   S R+   W + DEM  R     ++T+ +LI GLC    +D A+ L    M+   
Sbjct: 381 IDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNK-MKDQG 439

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           ++P+   F  L+ GLC  G L  A  V ++++     ++   Y+ +I    K G   E  
Sbjct: 440 IRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEAL 499

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEED 308
            +L +M++ GC P++VT+  +I    K+++
Sbjct: 500 TMLSKMEDNGCIPDAVTFEIIIIALFKKDE 529



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 104/202 (51%), Gaps = 5/202 (2%)

Query: 140  LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
            L +I+++   PD  ++  LI+G  +  ++  A    D+++ +  Q   V++GTLI G+C 
Sbjct: 984  LAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCK 1043

Query: 200  ELRVDEALKLKEDI-MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
                  A+KL   I  R+   KPD  ++ ++I  LC    +S A G+  EM    I  D 
Sbjct: 1044 IGDTRAAIKLLRKIDGRL--TKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADV 1101

Query: 259  GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE--EDFEAAFTIL 316
              Y++LI      G+  E   +L +M  +   PN  TYN L+   CKE  +  + + ++L
Sbjct: 1102 VTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSML 1161

Query: 317  DEMGDKGCKANPISYNVILGGL 338
             +M D GCKAN +++ +I+  L
Sbjct: 1162 SKMEDNGCKANAVTFEIIISAL 1183



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 106/198 (53%), Gaps = 1/198 (0%)

Query: 146  KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
            K + PD  + NILI+      ++   + +  +++KR   P  +TF TLI GLCL+ +V++
Sbjct: 955  KGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNK 1014

Query: 206  ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
            AL   + ++     + +   + +LI G+C +G+   A+ +  ++     + D  +Y+++I
Sbjct: 1015 ALHFHDKLL-AQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTII 1073

Query: 266  SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
             AL K    ++   +  EM  +G   + VTYN LI GFC     + A  +L++M  K   
Sbjct: 1074 DALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTIN 1133

Query: 326  ANPISYNVILGGLCKDGK 343
             N  +YN+++  LCK+GK
Sbjct: 1134 PNVRTYNILVDALCKEGK 1151



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 105/206 (50%), Gaps = 4/206 (1%)

Query: 121  FNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
            F TL+N     G++++      +++ +    +  SY  LI+G         A K+  ++ 
Sbjct: 999  FTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKID 1058

Query: 180  KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
             R  +P +V + T+I  LC    V +A  L  + M V  +  D   + +LI G C VG+L
Sbjct: 1059 GRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFE-MNVKGISADVVTYNTLIYGFCIVGKL 1117

Query: 240  SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK--NEFPAILKEMKERGCKPNSVTYN 297
              A+G+  +MV   I  +   Y+ L+ AL K G+   +E  ++L +M++ GCK N+VT+ 
Sbjct: 1118 KEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFE 1177

Query: 298  ALISGFCKEEDFEAAFTILDEMGDKG 323
             +IS   ++++ +    +L EM  +G
Sbjct: 1178 IIISALFEKDENDKVEKLLHEMIARG 1203



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 4/211 (1%)

Query: 81   PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKE 139
            P  I F  +I        + +AL   D++ +   Q+    + TL+N     G     +K 
Sbjct: 994  PDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKL 1053

Query: 140  LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
            L +I  +   PD   YN +I      + +  A+ +F EM  + +   +VT+ TLIYG C+
Sbjct: 1054 LRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCI 1113

Query: 200  ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE--LSLALGVKEEMVRDKIEMD 257
              ++ EA+ L    M +  + P+ + +  L+  LC  G+  L  +L +  +M  +  + +
Sbjct: 1114 VGKLKEAIGLLNK-MVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKAN 1172

Query: 258  AGIYSSLISALFKAGRKNEFPAILKEMKERG 288
            A  +  +ISALF+    ++   +L EM  RG
Sbjct: 1173 AVTFEIIISALFEKDENDKVEKLLHEMIARG 1203



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 52/103 (50%)

Query: 240  SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
            S A+ +   +    I+ D    + LI+     G+     +IL ++ +RG  P+++T+  L
Sbjct: 943  STAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTL 1002

Query: 300  ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            I+G C +     A    D++  +G + N +SY  ++ G+CK G
Sbjct: 1003 INGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIG 1045


>gi|255660930|gb|ACU25634.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 484

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 175/361 (48%), Gaps = 56/361 (15%)

Query: 38  HPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN 88
           H L+ FR+    NLL ++      II  LGRA   +  + IL  +     +   E ++  
Sbjct: 27  HALQFFRWVERSNLLEHNREIHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVM 85

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVK--------------------FFNTLLNPK 128
           +I  YG+A +++ ++++F +M    V+ T+K                    +FN ++N  
Sbjct: 86  MIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVISRRGRYMMSKRYFNKMVNEG 145

Query: 129 LT---------------CGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAW 172
           +                 GK++     F+ M+ + ++PD  +YN +I+G    +++E+A 
Sbjct: 146 IEPTRHTFNVLIWGFFLSGKVETANRFFEDMKSREITPDVITYNTMINGYNRVKKMEEAE 205

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
           K F EM +R++ PT+VT+ TLI G     RVD+AL+L E+ M+   +KP+   +++L+ G
Sbjct: 206 KYFLEMKERKIDPTVVTYTTLIKGYASVDRVDDALRLVEE-MKGLGIKPNAITYSTLLPG 264

Query: 233 LCAVGELSLALGVKEEMVRDKIE-MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           LC   ++S A  + +EMV   +   D  I+  LIS+  KAG  +    +LK M       
Sbjct: 265 LCNAEKMSEARSILKEMVDKYVAPTDNSIFMRLISSQCKAGNLDAAADVLKAMIRLSVPT 324

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS--------YNVILGGLCKDGK 343
            +  Y  LI  +CK   ++ A  +LD++ +K     P S        YN ++  LC +G+
Sbjct: 325 EAGHYGVLIEYYCKAGQYDKAVKLLDKLIEKDIILRPQSTLHMELSAYNPLIEYLCNNGQ 384

Query: 344 C 344
            
Sbjct: 385 T 385



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 130/263 (49%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKY 147
           + GF+   ++ E A + F++M S  +   V  +NT++N      K++  ++ F ++ E+ 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDMKSREITPDVITYNTMINGYNRVKKMEEAEKYFLEMKERK 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G     R++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IDPTVVTYTTLIKGYASVDRVDDALRLVEEMKGLGIKPNAITYSTLLPGLCNAEKMSEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + ++++  Y    D  +F  LI   C  G L  A  V + M+R  +  +AG Y  LI  
Sbjct: 276 SILKEMVDKYVAPTDNSIFMRLISSQCKAGNLDAAADVLKAMIRLSVPTEAGHYGVLIEY 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             KAG+ ++   +L ++ E+    +P S        YN LI   C       A T++ ++
Sbjct: 336 YCKAGQYDKAVKLLDKLIEKDIILRPQSTLHMELSAYNPLIEYLCNNGQTAKAETLVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +P S N ++ G  ++G
Sbjct: 396 MKLGVQ-DPTSLNTLIRGHSQEG 417



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 135/297 (45%), Gaps = 7/297 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++L+   L  AK  +   Q    ++    +     I   +I   GRA  L  A  +  +M
Sbjct: 12  HELVYNVLHGAKNAEHALQFFRWVERSNLLEHNREIHLKIIEILGRASKLNHARCILLDM 71

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSR-- 166
               ++     +  +++     G +    +LFQ ME+  V     SY+ L    V+SR  
Sbjct: 72  PKKGLEWDEDMWVMMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFK--VISRRG 129

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           R   + + F++MV   ++PT  TF  LI+G  L  +V+ A +  ED M+   + PD   +
Sbjct: 130 RYMMSKRYFNKMVNEGIEPTRHTFNVLIWGFFLSGKVETANRFFED-MKSREITPDVITY 188

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
            ++I G   V ++  A     EM   KI+     Y++LI       R ++   +++EMK 
Sbjct: 189 NTMINGYNRVKKMEEAEKYFLEMKERKIDPTVVTYTTLIKGYASVDRVDDALRLVEEMKG 248

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS-YNVILGGLCKDG 342
            G KPN++TY+ L+ G C  E    A +IL EM DK       S +  ++   CK G
Sbjct: 249 LGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYVAPTDNSIFMRLISSQCKAG 305



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 135/298 (45%), Gaps = 20/298 (6%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D ++  + P   +++ Y+ +I    R K  +E ++   ++K + +I P  + +  +I  Y
Sbjct: 175 DMKSREITP---DVITYNTMINGYNRVKKMEEAEKYFLEMK-ERKIDPTVVTYTTLIKGY 230

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSP-D 151
                ++ AL++ +EM    ++     ++TLL       K+   + +  ++++KYV+P D
Sbjct: 231 ASVDRVDDALRLVEEMKGLGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYVAPTD 290

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-- 209
              +  LI     +  L+ A  V   M++  +      +G LI   C   + D+A+KL  
Sbjct: 291 NSIFMRLISSQCKAGNLDAAADVLKAMIRLSVPTEAGHYGVLIEYYCKAGQYDKAVKLLD 350

Query: 210 ----KEDIMRVYN-VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM---DAGIY 261
               K+ I+R  + +  +   +  LI+ LC  G+ + A    E +VR  +++   D    
Sbjct: 351 KLIEKDIILRPQSTLHMELSAYNPLIEYLCNNGQTAKA----ETLVRQLMKLGVQDPTSL 406

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           ++LI    + G  +    +LK M  R        Y++L+  + K+ +   A   LD M
Sbjct: 407 NTLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYDSLVQSYLKKNEPADAKAALDSM 464



 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 28/142 (19%), Positives = 67/142 (47%)

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
            + AL+    + R   ++ + ++   +I+ L    +L+ A  +  +M +  +E D  ++ 
Sbjct: 25  AEHALQFFRWVERSNLLEHNREIHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWV 84

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
            +I +  KAG   E   + ++M+E G +    +Y+AL     +   +  +    ++M ++
Sbjct: 85  MMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVISRRGRYMMSKRYFNKMVNE 144

Query: 323 GCKANPISYNVILGGLCKDGKC 344
           G +    ++NV++ G    GK 
Sbjct: 145 GIEPTRHTFNVLIWGFFLSGKV 166


>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           turbinata]
          Length = 413

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 138/273 (50%), Gaps = 39/273 (14%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 143 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS--AMLANGVQPDVYTYSVL 200

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE------- 211
           I+G     +++DA ++FDEM+ + L P  VTF TLI G C   RVD A+++ +       
Sbjct: 201 INGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSL 260

Query: 212 ---------------------------DIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
                                      D M +  +KPD   + +LI G C  G+L  A  
Sbjct: 261 LPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFK 320

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
            ++ M+++ I +D   Y++LIS L + G+  +   +L+EM   G KP+  TY  +I+ FC
Sbjct: 321 HRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFC 380

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           K+ D      +L EM   G   + ++YNV++ G
Sbjct: 381 KKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 413



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 131/250 (52%), Gaps = 2/250 (0%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDAC 153
           + R  +     ++E+       ++ FFN L++     G +   + +F  + K+ + P   
Sbjct: 101 KLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVV 160

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           SYN L++G +    L++ +++   M+   +QP + T+  LI GLC E ++D+A +L ++ 
Sbjct: 161 SYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDE- 219

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M V  + P+G  F +LI G C  G + LA+ + + M+   +  D   Y++LI  L K G 
Sbjct: 220 MLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGD 279

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             +   ++ EM  +G KP+  TY  LI G CKE D + AF     M  +  + + ++Y  
Sbjct: 280 LKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTA 339

Query: 334 ILGGLCKDGK 343
           ++ GLC++G+
Sbjct: 340 LISGLCQEGQ 349


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 141/292 (48%), Gaps = 4/292 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+  +  L ++    E  +++  +K D    P  + F  +I    +A  L+ A Q+ DEM
Sbjct: 57  YNFFVHALCKSGKVPEAMEVVKNMK-DGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEM 115

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
                   +  +NTL+N   + G+      + Q M    +PD  +YN +IHG   S  ++
Sbjct: 116 ERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMT--TTPDTQTYNAIIHGFCKSGEID 173

Query: 170 DAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            A+   +EM +R    P   T+  LI GLC    + +A +L ++++   +       F +
Sbjct: 174 RAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNT 233

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ G C   +L  A  +   M+      D   YS++I  L + G  ++  A+L++M  RG
Sbjct: 234 LVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRG 293

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           CKP+ VTY  L++G CK      A  ++  M + GC  N ++Y+++  GLCK
Sbjct: 294 CKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCK 345



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 149/294 (50%), Gaps = 10/294 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           +++ ++ +I  L +A   DE QQ+L +++  +      + +  +I G     R  E  L 
Sbjct: 88  DVVTFNTLIAGLCKAGRLDEAQQVLDEMER-SGFAANLVTYNTLINGLSSAGRSGEAVLV 146

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV--SPDACSYNILIHGC 162
           M    ++ + Q     +N +++     G++DR     + M++    SPD  +Y+ILI+G 
Sbjct: 147 MQGMTTTPDTQT----YNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGL 202

Query: 163 VVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
             S  L  A ++  EM+ R+    ++V F TL+ G C    +D A +L   ++  +   P
Sbjct: 203 CKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLE-HGCAP 261

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   ++++I GLC  G++     + E+MV    + D   Y+ L++ L KAG+  E   ++
Sbjct: 262 DVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLV 321

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           K M E GC PN+VTY+ +  G CK +  + A  +L  + DKG   + +++  +L
Sbjct: 322 KRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEALL 375



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 132/277 (47%), Gaps = 5/277 (1%)

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           +L +++    + P   ++   +    ++  +  A+++   M     +  V  FNTL+   
Sbjct: 40  LLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGL 99

Query: 129 LTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
              G+LD  +++   ME+   + +  +YN LI+G   + R  +A  V   M      P  
Sbjct: 100 CKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTT---TPDT 156

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
            T+  +I+G C    +D A    E++ +     PD   ++ LI GLC    L  A  + +
Sbjct: 157 QTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQ 216

Query: 248 EMV-RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           EM+ R         +++L+    KA   +    +L  M E GC P+ VTY+ +I G C+ 
Sbjct: 217 EMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRC 276

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            D +  F +L++M  +GCK + ++Y V++ GLCK GK
Sbjct: 277 GDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGK 313



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 1/123 (0%)

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRD-KIEMDAGIYSSLISALFKAGRKNEFPAI 280
           D   +  L++  C  GEL  A+ +  EM +   +     +Y+  + AL K+G+  E   +
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +K MK+  CKP+ VT+N LI+G CK    + A  +LDEM   G  AN ++YN ++ GL  
Sbjct: 77  VKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSS 136

Query: 341 DGK 343
            G+
Sbjct: 137 AGR 139



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 33/185 (17%)

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           T+  L+   CL   +  A+ L  ++ +   + P   ++   +  LC  G++  A+ V + 
Sbjct: 20  TYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKN 79

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN----------- 297
           M     + D   +++LI+ L KAGR +E   +L EM+  G   N VTYN           
Sbjct: 80  MKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGR 139

Query: 298 ---------------------ALISGFCKEEDFEAAFTILDEMGDK-GCKANPISYNVIL 335
                                A+I GFCK  + + A+  L+EM  + GC  +  +Y++++
Sbjct: 140 SGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILI 199

Query: 336 GGLCK 340
            GLCK
Sbjct: 200 NGLCK 204


>gi|255660782|gb|ACU25560.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 418

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 132/244 (54%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y +   L+   ++ + M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANEL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++  + P+  ++  LI G   +RR++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 289 KGDLKQAQDLIDE-MSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP   TY  +I+ FC++ D      +L EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCEKGDVWTGLKLLKEM 407

Query: 320 GDKG 323
              G
Sbjct: 408 QRDG 411



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/267 (31%), Positives = 136/267 (50%), Gaps = 9/267 (3%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ ++++ +V  FNTL+N  +  G LD 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M+   V  D  +Y++LI+G   + +++DA ++FDEM+   L P  VTF TLI 
Sbjct: 190 GFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   RVD A+++ + ++   ++ PD   + +LI GLC  G+L  A  + +EM    ++
Sbjct: 250 GHCKNRRVDVAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI    K G         K M +   + + V Y ALISG C+E     A  +
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
           L EM   G K    +Y +I+   C+ G
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCEKG 395



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 125/228 (54%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++  +  G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +Q  + T+  LI GLC   ++D+A +L ++++    + P+G  F +LI G C 
Sbjct: 195 NAMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLD-NGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
              + +A+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 254 NRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGR 361



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE +          ++ L+ +  K G      ++   + +   +P+ V++N L+
Sbjct: 119 LVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ K  D +  F + + M   G +++  +Y+V++ GLCK  K
Sbjct: 179 NGYIKLGDLDEGFRLKNAMQASGVQSDVYTYSVLINGLCKASK 221


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 148/296 (50%), Gaps = 7/296 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y++II    +    +   ++L  +K +  +      + N+I  + R   LE A  +
Sbjct: 446 NVITYNIIIHIYFKQGYMNNAMRLLEMMKGNG-LKLDTWTYANLISGFSRGGKLEHAFSL 504

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           F+EM    +   V  +N ++N  LT  K+D    LF +++E    P + +YN++I G   
Sbjct: 505 FNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSK 564

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R+ +A     +MVK+ L P ++T+ + I GLC   R   A K+  + M+  +  P+  
Sbjct: 565 TNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHE-MKKRDYFPNLC 623

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++SLI GLC  G+   A    E ++ D  E +   Y++L+  L   GR  E   +++ M
Sbjct: 624 TYSSLIDGLCQEGQAEDA----ERLLDDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESM 679

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           K++G +P+   Y AL+ G CK  + E+A  I D M   G +     Y  ++  LCK
Sbjct: 680 KKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYKALICALCK 735



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 152/336 (45%), Gaps = 44/336 (13%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIG-FYGRARLLERALQ 104
           N+  Y  +I+ L R   F+    + H++  D  +VP  + +  +I   Y   R  E AL 
Sbjct: 341 NVQTYTALISGLSRDGKFEVAIGVYHKMLADG-LVPTAVTYSALINQLYVEGRF-ETALT 398

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH--- 160
           +F+ M S +     + +N ++    + G + +   +F Q+++   SP+  +YNI+IH   
Sbjct: 399 IFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYF 458

Query: 161 --------------------------------GCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
                                           G     +LE A+ +F+EMV+  + P +V
Sbjct: 459 KQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVV 518

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           T+  +I G     +VD+AL L   ++   NV P    +  +I G      +S A     +
Sbjct: 519 TYNAIINGYLTVAKVDDALALFWKMVESGNV-PSSGTYNMMISGFSKTNRISEAENFCGK 577

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           MV+  +  +   Y+S I  L K GR +    I  EMK+R   PN  TY++LI G C+E  
Sbjct: 578 MVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQ 637

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
            E A  +LD+    GC+ N  +Y  ++ GLC  G+C
Sbjct: 638 AEDAERLLDD----GCEPNVDTYTTLVRGLCGKGRC 669



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 145/309 (46%), Gaps = 3/309 (0%)

Query: 35  TEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYG 94
           +E +    F Y L  +  ++ +LG+  M D + + ++    ++ I P    F  +I    
Sbjct: 155 SEINTTYDFGYTLYSFSTLLIQLGKFDM-DGLGRDVYIEMLNSGIRPNLFTFNAMIKILC 213

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDAC 153
               ++ A  +   +  +        + +L+      G LD   E+F  M K    P++ 
Sbjct: 214 NKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSV 273

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +Y+ LI+G     RLE+A  + +EM+ + ++PT+  +   I  LC   R  EA+KL    
Sbjct: 274 TYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGK- 332

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M+     P+ Q + +LI GL   G+  +A+GV  +M+ D +   A  YS+LI+ L+  GR
Sbjct: 333 MKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGR 392

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
                 I + M      PN+ TYN +I GFC     + A  I D+M   G   N I+YN+
Sbjct: 393 FETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNI 452

Query: 334 ILGGLCKDG 342
           I+    K G
Sbjct: 453 IIHIYFKQG 461



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 128/258 (49%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK-LDRMKE 139
           P  + +  +I        LE A+ M +EM    ++ TV  +   +      G+  + +K 
Sbjct: 270 PNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKL 329

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L ++ ++   P+  +Y  LI G     + E A  V+ +M+   L PT VT+  LI  L +
Sbjct: 330 LGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYV 389

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E R + AL + E  M  ++  P+ + +  +IKG C++G +  A  + ++M++     +  
Sbjct: 390 EGRFETALTIFE-WMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVI 448

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+ +I   FK G  N    +L+ MK  G K ++ TY  LISGF +    E AF++ +EM
Sbjct: 449 TYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEM 508

Query: 320 GDKGCKANPISYNVILGG 337
            + G   N ++YN I+ G
Sbjct: 509 VEHGISPNVVTYNAIING 526



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 130/264 (49%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    +  +I    R    E A+ ++ +M +  +  T   ++ L+N     G+ +    +
Sbjct: 340 PNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTI 399

Query: 141 FQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ M  + S P+  +YN++I G      ++ A  +FD+M+K    P ++T+  +I+    
Sbjct: 400 FEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFK 459

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  ++ A++L E +M+   +K D   +A+LI G    G+L  A  +  EMV   I  +  
Sbjct: 460 QGYMNNAMRLLE-MMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVV 518

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+++I+      + ++  A+  +M E G  P+S TYN +ISGF K      A     +M
Sbjct: 519 TYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKM 578

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             +G   N I+Y   + GLCK+G+
Sbjct: 579 VKQGLLPNVITYTSFIDGLCKNGR 602



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 140/282 (49%), Gaps = 11/282 (3%)

Query: 68  QILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM-SSFNVQMTVKFFNTLLN 126
            +L++L  D   VP + +   +I        ++R +Q+  E+ ++++   T+  F+TLL 
Sbjct: 116 SMLNRLVRDRLFVPADNVRILMIKSCRNEGEVKRVIQVLSEINTTYDFGYTLYSFSTLL- 174

Query: 127 PKLTCGKLDRMKEL-----FQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
             +  GK D M  L      +++   + P+  ++N +I       ++++A  +   +   
Sbjct: 175 --IQLGKFD-MDGLGRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHY 231

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
              P   T+ +LI G C    +D A ++ + +++     P+   +++LI GLC+ G L  
Sbjct: 232 GACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKD-GCDPNSVTYSALINGLCSEGRLEE 290

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           A+ + EEM+   IE     Y+  I +L  AGR  E   +L +MK+RGC PN  TY ALIS
Sbjct: 291 AMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALIS 350

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G  ++  FE A  +  +M   G     ++Y+ ++  L  +G+
Sbjct: 351 GLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGR 392



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 6/262 (2%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  I +  +I  Y +   +  A+++ + M    +++    +  L++     GKL+    L
Sbjct: 445 PNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSL 504

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++E  +SP+  +YN +I+G +   +++DA  +F +MV+    P+  T+  +I G   
Sbjct: 505 FNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSK 564

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R+ EA      +++   + P+   + S I GLC  G  SLA  +  EM +     +  
Sbjct: 565 TNRISEAENFCGKMVK-QGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLC 623

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YSSLI  L + G+  +   +L +    GC+PN  TY  L+ G C +     A  +++ M
Sbjct: 624 TYSSLIDGLCQEGQAEDAERLLDD----GCEPNVDTYTTLVRGLCGKGRCYEADQLVESM 679

Query: 320 GDKGCKANPISYNVILGGLCKD 341
             KG + +   Y  +L G CK+
Sbjct: 680 KKKGLQPSEEIYRALLVGQCKN 701


>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hermannioides]
          Length = 417

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 138/273 (50%), Gaps = 39/273 (14%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 147 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS--AMLASGVQPDVYTYSVL 204

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE------- 211
           I+G     +++DA ++FDEM+ + L P  VTF TLI G C   RVD A+++ +       
Sbjct: 205 INGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSL 264

Query: 212 ---------------------------DIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
                                      D M +  +KPD   + +LI G C  G+L  A  
Sbjct: 265 LPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFE 324

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
            ++ M+++ I +D   Y++LIS L + GR  +   +L+EM     KP++ TY  +I+ FC
Sbjct: 325 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFC 384

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           K+ D      +L EM   G   + ++YNV++ G
Sbjct: 385 KKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 417



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 128/239 (53%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   SYN L++G + 
Sbjct: 116 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 175

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++ +++   M+   +QP + T+  LI GLC E ++D+A +L ++ M V  + P+G 
Sbjct: 176 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDE-MLVKGLIPNGV 234

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ + + M+   +  D   Y++LI  L K G   +   ++ EM
Sbjct: 235 TFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 294

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G KP+  TY  LI G CKE D + AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 295 SMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGR 353



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G      ++   + + G +P+ V+YN L+
Sbjct: 111 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 170

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 171 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 213


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 164/299 (54%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y+ +I  L +   +++++ +L ++  +  I P    F  +I    +   +E A ++
Sbjct: 237 NIFTYNSLIDGLCKLGQWEKVKTLLSEMV-NLNINPNVHTFSILIDGLCKEGKVEDADEV 295

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
              M    V+  +  ++ +++     G++DR + +F ++ +K + P+  SY+ILI+G   
Sbjct: 296 MRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCK 355

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            + L  A ++F E+ ++ L+P  VT+ T+++GL    R+ +A K+ ++++RV    PD  
Sbjct: 356 KKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRV-GPTPDIC 414

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           + ++L+ G    G +  A+ +  ++ R++ + +   Y+ +I+ L K  R  E  AI +++
Sbjct: 415 LHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKL 474

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  P+  TYN +I+GFC+E  F+    IL +M D GC AN I+YNVI+ G  +  K
Sbjct: 475 PSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNK 533



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 118/224 (52%), Gaps = 2/224 (0%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           + T++N     G  ++   L +IME+    PD  +Y+I+I        L+ A  + +EM 
Sbjct: 171 YGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMK 230

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           ++ + P + T+ +LI GLC +L   E +K     M   N+ P+   F+ LI GLC  G++
Sbjct: 231 QKNIPPNIFTYNSLIDGLC-KLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKV 289

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A  V   M+   +E D   YS+++      G+ +    +   ++++G KPN  +Y+ L
Sbjct: 290 EDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSIL 349

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I+G+CK+++   A  +  E+  KG K + ++Y+ IL GL + G+
Sbjct: 350 INGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGR 393



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 113/229 (49%), Gaps = 3/229 (1%)

Query: 114 VQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDACSYNILIHGCVVSRRLEDA 171
           +   V  FNTLL       K+     LF+  + EK   P+   Y  +++G       E  
Sbjct: 128 IPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKT 187

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIK 231
             +   M +   +P + T+  +I  LC ++ +D A+ L  + M+  N+ P+   + SLI 
Sbjct: 188 LSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNE-MKQKNIPPNIFTYNSLID 246

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           GLC +G+      +  EMV   I  +   +S LI  L K G+  +   +++ M E+G +P
Sbjct: 247 GLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEP 306

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + +TY+A++ G+C     + A  + + + DKG K N  SY++++ G CK
Sbjct: 307 DIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCK 355



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 144/296 (48%), Gaps = 7/296 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  + ++I  L +    ++  +++  +  +  + P  I +  ++  Y     ++RA ++
Sbjct: 272 NVHTFSILIDGLCKEGKVEDADEVMRHMI-EKGVEPDIITYSAIMDGYCLRGQVDRARRV 330

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           F+ +    ++  +  ++ L+N       L +  +LF +I +K + PD  +Y+ ++HG + 
Sbjct: 331 FNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIE 390

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R+ DA K+FDEM++    P +    TL++G      V+EA+ L   + R    + D  
Sbjct: 391 VGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERN---REDTN 447

Query: 225 V--FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
           +  +  +I GLC    +  A  + E++    +  D   Y+ +I+   + G  +E   IL+
Sbjct: 448 ISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILR 507

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           +M++ GC  N++TYN ++ GF +        + + EM  +G   +  +  V++  L
Sbjct: 508 KMEDNGCPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVLINVL 563



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 105/211 (49%), Gaps = 35/211 (16%)

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTL------------IYGLCLELRV------DEALK- 208
           L+DA  +F  MV+ +  P+++ F  L            +  L  E+R+      D  L  
Sbjct: 43  LDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNI 102

Query: 209 ------LKEDIMRVYNVKP---------DGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
                 L+  I   ++V P         +   F +L+ GL A  +++ A+ + +++VR+K
Sbjct: 103 VTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREK 162

Query: 254 I-EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
           I E +  +Y ++++ L K G   +  ++L+ M++   KP+  TY+ +I   CK+ + +AA
Sbjct: 163 ICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAA 222

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +L+EM  K    N  +YN ++ GLCK G+
Sbjct: 223 INLLNEMKQKNIPPNIFTYNSLIDGLCKLGQ 253


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 129/264 (48%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  +I    +     +A+++FD+M +   Q  V  +NT++N     G+      L
Sbjct: 161 PTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGL 220

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
            + ME+    P+  +Y+ LI      R + +A  +F  M  + + P + T+ +LI GLC 
Sbjct: 221 LKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCK 280

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R  EA  L  + M   N+ PD   F  L+   C  G++S ALGV + M    +E +  
Sbjct: 281 FSRWKEASALLNE-MTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVV 339

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YSSL+          E   +   M  +GCKPN  +YN LI+G+CK +  + A  + +EM
Sbjct: 340 TYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEM 399

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             +G   N +SYN ++ G C+ GK
Sbjct: 400 IHQGLTPNNVSYNTLIHGFCQLGK 423



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 113/230 (49%), Gaps = 2/230 (0%)

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLED 170
             +Q T+  F TL+N     G+  +  ELF  M  K   PD  +YN +I+G         
Sbjct: 157 LGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAA 216

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           A  +  +M +   QP +VT+ TLI  LC +  V+EAL +    M+   + PD   + SLI
Sbjct: 217 AAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFS-YMKAKGISPDIFTYTSLI 275

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
           +GLC       A  +  EM    I  D   ++ L+    K G+ +E   +LK M E G +
Sbjct: 276 QGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVE 335

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           PN VTY++L+ G+    D   A  +   M  KGCK N  SYN+++ G CK
Sbjct: 336 PNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCK 385



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 148/294 (50%), Gaps = 3/294 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y  +I  L +   + E   +L+++     I+P  + F  ++  + +   +  AL +
Sbjct: 267 DIFTYTSLIQGLCKFSRWKEASALLNEMT-SLNIMPDIVTFNVLVDTFCKEGKVSEALGV 325

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
              M+   V+  V  +++L+        +   ++LF +M  K   P+  SYNILI+G   
Sbjct: 326 LKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCK 385

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           ++R+++A ++F+EM+ + L P  V++ TLI+G C   ++ EA  L  ++    N+ PD  
Sbjct: 386 AKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNL-PDLF 444

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++ L+ G C  G L  A  +   M    ++ +  +Y+ L+ A+ K+G   +   +  E+
Sbjct: 445 TYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSEL 504

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             +G +P+   Y  +I+G CKE   + A      M   GC  + ISYNVI+ GL
Sbjct: 505 FVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGL 558



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 142/298 (47%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L R ++ +E   I   +K    I P    + ++I    +    + A  +
Sbjct: 232 NMVTYSTLIDSLCRDRLVNEALDIFSYMKAKG-ISPDIFTYTSLIQGLCKFSRWKEASAL 290

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            +EM+S N+   +  FN L++     GK+     + + M E  V P+  +Y+ L++G  +
Sbjct: 291 LNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSL 350

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              + +A K+F  M+ +  +P + ++  LI G C   R+DEA++L  +++    + P+  
Sbjct: 351 WTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIH-QGLTPNNV 409

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G C +G+L  A  +   M  +    D   YS L+    K G   +   + + M
Sbjct: 410 SYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAM 469

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +    KPN V Y  L+   CK  + + A  +  E+  +G + +   Y  I+ GLCK+G
Sbjct: 470 QSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEG 527



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 130/245 (53%), Gaps = 9/245 (3%)

Query: 107 DEMSSFNVQMTVK------FFNTLLNPKLTCGKL-DRMKELFQIMEKY-VSPDACSYNIL 158
           D ++SFN  +  K       F  LL+  +  G+  D +  L + ME   +SP+  + +I 
Sbjct: 75  DALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIF 134

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           ++     +R++  + V  +++K  LQPT+VTF TLI GLC      +A++L +D M    
Sbjct: 135 MNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDD-MVAKG 193

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
            +PD   + ++I GLC +GE + A G+ ++M     + +   YS+LI +L +    NE  
Sbjct: 194 CQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEAL 253

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            I   MK +G  P+  TY +LI G CK   ++ A  +L+EM       + +++NV++   
Sbjct: 254 DIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTF 313

Query: 339 CKDGK 343
           CK+GK
Sbjct: 314 CKEGK 318



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 122/266 (45%), Gaps = 8/266 (3%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  +I    R RL+  AL +F  M +  +   +  + +L+     C K  R KE 
Sbjct: 231 PNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQG--LC-KFSRWKEA 287

Query: 141 FQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
             ++ +  S    PD  ++N+L+       ++ +A  V   M +  ++P +VT+ +L+YG
Sbjct: 288 SALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYG 347

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
             L   V EA KL   +M     KP+   +  LI G C    +  A+ +  EM+   +  
Sbjct: 348 YSLWTDVVEARKLFH-VMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTP 406

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +   Y++LI    + G+  E   + + M   G  P+  TY+ L+ GFCK+     AF + 
Sbjct: 407 NNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLF 466

Query: 317 DEMGDKGCKANPISYNVILGGLCKDG 342
             M     K N + Y +++  +CK G
Sbjct: 467 RAMQSTYLKPNLVMYTILVHAMCKSG 492


>gi|302143622|emb|CBI22375.3| unnamed protein product [Vitis vinifera]
          Length = 407

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 166/334 (49%), Gaps = 25/334 (7%)

Query: 29  NPNPND-------------TEAHP--LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL 73
           NPNPND              EA P  L+ + +   H   ++ +  +A  F+E    L  L
Sbjct: 35  NPNPNDGFNSRNAPKVGVSAEARPAHLQSYDFRETHLMKLLNRSCKAGKFNESLYFLECL 94

Query: 74  KHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133
            +     P  I+   +I  +   + +E+A ++ + + S + +  V  +N +++      K
Sbjct: 95  VNKG-YTPDVILCTKLIKGFFNFKNIEKASRVMEILES-HTEPDVFAYNAVISGFC---K 149

Query: 134 LDRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
           ++R++   Q++ +  +    PD  +YNI+I      R+L  A KV D+++     PT++T
Sbjct: 150 VNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVIT 209

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           +  LI    +E  ++EA+KL E+ M    + PD   + ++I+G+C  G       +  EM
Sbjct: 210 YTILIEATIVEGGINEAMKLLEE-MLARGLLPDMYTYNAIIRGMCKEGMWDEGEKLVAEM 268

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
                E +   YS LIS+L + GR +E  ++LK M E+   P++ +Y+ LIS  CKE   
Sbjct: 269 FSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRL 328

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + A  I+D M   GC  + ++YN IL  LCK+G 
Sbjct: 329 DLAIGIMDYMISNGCLPDIVNYNTILAALCKNGN 362



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 125/268 (46%), Gaps = 4/268 (1%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           K  ++  +++  L+  T   P    +  VI  + +   +E A Q+ + M +      +  
Sbjct: 117 KNIEKASRVMEILESHTE--PDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVT 174

Query: 121 FNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +N ++       KL   +K L Q++     P   +Y ILI   +V   + +A K+ +EM+
Sbjct: 175 YNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEML 234

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
            R L P + T+  +I G+C E   DE  KL  + M     +P+   ++ LI  LC  G +
Sbjct: 235 ARGLLPDMYTYNAIIRGMCKEGMWDEGEKLVAE-MFSRGCEPNKVTYSILISSLCRFGRI 293

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A+ V + M+  ++  D   Y  LISAL K GR +    I+  M   GC P+ V YN +
Sbjct: 294 DEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTI 353

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           ++  CK  +   A  I +++   GC  N
Sbjct: 354 LAALCKNGNANQALEIFNKLRGMGCPPN 381


>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
          Length = 1563

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 134/258 (51%), Gaps = 4/258 (1%)

Query: 86   FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145
            +  +I   G+ R  + A Q+ D M + NV++ V+ F  L+   +  G        F  ME
Sbjct: 1181 YMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRME 1240

Query: 146  KY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
             Y   PD  +++++I      RR  +A   FD + K R +P +V + +L++G C    + 
Sbjct: 1241 DYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSL-KDRFEPDVVVYTSLVHGWCRAGNIS 1299

Query: 205  EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
            EA ++  + M++  + P+   ++ +I  LC  G+++ A  V  EM+    + +A  +++L
Sbjct: 1300 EAERVFGE-MKMAGIXPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNL 1358

Query: 265  ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
            +    KAGR  +   +  +MK  GC P+++TYN LI   C++++ E A  IL+ +  KGC
Sbjct: 1359 MRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSV-KKGC 1417

Query: 325  KANPISYNVILGGLCKDG 342
              N  S+N I G + K G
Sbjct: 1418 NLNASSFNPIFGCISKLG 1435



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 137/340 (40%), Gaps = 36/340 (10%)

Query: 37   AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
            A  L+ F ++   Y  +I   G+ + FD   Q++  +K     +P E  F  ++  Y +A
Sbjct: 1168 ATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVET-FTILVRRYVKA 1226

Query: 97   RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYN 156
             L   A+  F+ M  +  +     F+ +++      +    +  F  ++    PD   Y 
Sbjct: 1227 GLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYT 1286

Query: 157  ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE---------------- 200
             L+HG   +  + +A +VF EM    + P + T+  +I  LC                  
Sbjct: 1287 SLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRAHDVFSEMIDV 1346

Query: 201  ------------LRVDEALKLKEDIMRVYN------VKPDGQVFASLIKGLCAVGELSLA 242
                        +RV       E +++VYN        PD   +  LI+  C    L  A
Sbjct: 1347 GCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEA 1406

Query: 243  LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
            + +    V+    ++A  ++ +   + K G  N    +  +MK+  C+PN+VTYN L+  
Sbjct: 1407 VKILNS-VKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRM 1465

Query: 303  FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            F  ++  +    +  EM +   + N  +Y V++   C  G
Sbjct: 1466 FADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIG 1505



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 148/313 (47%), Gaps = 9/313 (2%)

Query: 33   NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
            N  E +  KP   + + + ++I+ L + +   E Q     LK   R  P  +++ +++  
Sbjct: 1237 NRMEDYGCKP---DKIAFSVVISSLSKKRRAIEAQSFFDSLK--DRFEPDVVVYTSLVHG 1291

Query: 93   YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPD 151
            + RA  +  A ++F EM    +   V  ++ +++     G++ R  ++F ++++    P+
Sbjct: 1292 WCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPN 1351

Query: 152  ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
            A ++N L+   V + R E   +V+++M +    P  +T+  LI   C +  ++EA+K+  
Sbjct: 1352 AITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILN 1411

Query: 212  DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
             + +  N+  +   F  +   +  +G+++ A  +  +M   K   +   Y+ L+      
Sbjct: 1412 SVKKGCNL--NASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADK 1469

Query: 272  GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC-KANPIS 330
               +    + KEM E   +PN+ TY  LIS FC    +  A++   EM ++ C + +   
Sbjct: 1470 KSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPV 1529

Query: 331  YNVILGGLCKDGK 343
            Y ++L  L K G+
Sbjct: 1530 YEMVLQQLRKAGQ 1542



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 2/178 (1%)

Query: 166  RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            R+ + AW++ D M  R ++  + TF  L+          EA+    + M  Y  KPD   
Sbjct: 1192 RQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVH-AFNRMEDYGCKPDKIA 1250

Query: 226  FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
            F+ +I  L        A    + + +D+ E D  +Y+SL+    +AG  +E   +  EMK
Sbjct: 1251 FSVVISSLSKKRRAIEAQSFFDSL-KDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMK 1309

Query: 286  ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  PN  TY+ +I   C+      A  +  EM D GC  N I++N ++    K G+
Sbjct: 1310 MAGIXPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGR 1367



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 112/245 (45%), Gaps = 5/245 (2%)

Query: 46   NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            N+  Y ++I  L R+        +  ++  D    P  I F N++  + +A   E+ LQ+
Sbjct: 1316 NVYTYSIVIDALCRSGQITRAHDVFSEMI-DVGCDPNAITFNNLMRVHVKAGRTEKVLQV 1374

Query: 106  FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
            +++M           +N L+        L+   ++   ++K  + +A S+N  I GC+  
Sbjct: 1375 YNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFNP-IFGCISK 1433

Query: 166  -RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
               +  A ++F +M   + +P  VT+  L+     +   D  LKL+++ M    ++P+  
Sbjct: 1434 LGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKE-MDENEIEPNAN 1492

Query: 225  VFASLIKGLCAVGELSLALGVKEEMVRDK-IEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             +  LI   C +G  + A    +EM+ +K +     +Y  ++  L KAG+  +   ++++
Sbjct: 1493 TYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEK 1552

Query: 284  MKERG 288
            M  RG
Sbjct: 1553 MVNRG 1557


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 143/318 (44%), Gaps = 44/318 (13%)

Query: 60  AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK 119
           A++FD M    H+        P  + +C ++  Y         + +F+ M S  +    +
Sbjct: 390 AEIFDSMTAKGHK--------PDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCR 441

Query: 120 FFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
            FN L++     G +D    +F  M++  VSPD  +Y+ +I       RL DA + F++M
Sbjct: 442 VFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQM 501

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED-------------------------- 212
           V R +QP    + ++I G C+   + +A +L  +                          
Sbjct: 502 VARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGR 561

Query: 213 IMRVYNV---------KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
           +M  +++         +PD   F SLI G C VG++  A  + + M    +E D   YS+
Sbjct: 562 VMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYST 621

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           L+   FK GR N+   + +EM+ +G KPN+VTY  +++G  +     AA     EM + G
Sbjct: 622 LLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESG 681

Query: 324 CKANPISYNVILGGLCKD 341
                  Y +ILGGLC++
Sbjct: 682 TTVTVSIYGIILGGLCRN 699



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 136/299 (45%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           N+  Y +I+  L    M      +   + K      P  + +  VI  + +     +A  
Sbjct: 227 NVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACS 286

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK-ELFQIMEKYVSPDACSYNILIHGCV 163
           +F EM+   V+  V  +N +++       +D+ +  L Q+      PD  +YN +IHG  
Sbjct: 287 LFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYA 346

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              RL++A K+F +M  R L P +V   + +  LC   R  EA ++  D M     KPD 
Sbjct: 347 TLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEI-FDSMTAKGHKPDI 405

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +L+ G  + G  +  +G+   M  + I  D  +++ LI A  K G  ++   I  E
Sbjct: 406 VSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTE 465

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           M+++G  P+ VTY+ +IS F +      A    ++M  +G + N   Y+ I+ G C  G
Sbjct: 466 MQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHG 524



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 162/337 (48%), Gaps = 43/337 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQL-------------------------------- 73
           +++ Y+LII  L +A+  D+ + +L Q+                                
Sbjct: 299 DVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMF 358

Query: 74  -KHDTRIVPKEIIFCNV----IGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
            K  +R +   I+ CN     +  +GR++    A ++FD M++   +  +  + TLL+  
Sbjct: 359 RKMKSRGLIPNIVICNSFLASLCKHGRSK---EAAEIFDSMTAKGHKPDIVSYCTLLHGY 415

Query: 129 LTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
            + G    M  LF  M+   ++ D   +NILIH       ++DA  +F EM ++ + P +
Sbjct: 416 ASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDV 475

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           VT+ T+I       R+ +A++ K + M    ++P+  V+ S+I+G C  G L  A  +  
Sbjct: 476 VTYSTVISAFSRMGRLTDAME-KFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVS 534

Query: 248 EMVRDKIEM-DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           EM+   I   D   ++S+I++L K GR  +   I   + + G +P+ +T+ +LI G+C  
Sbjct: 535 EMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLV 594

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              + AF ILD M   G + + ++Y+ +L G  K+G+
Sbjct: 595 GKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGR 631



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 138/293 (47%), Gaps = 4/293 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++++I    +  M D+   I  +++    + P  + +  VI  + R   L  A++ F++M
Sbjct: 443 FNILIHAYAKRGMVDDAMLIFTEMQQQG-VSPDVVTYSTVISAFSRMGRLTDAMEKFNQM 501

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYV-SPDACSYNILIHGCVVSRR 167
            +  +Q     +++++      G L + KEL  +++ K +  PD   +N +I+      R
Sbjct: 502 VARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGR 561

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           + DA  +FD +     +P ++TF +LI G CL  ++D+A K+  D M V  V+ D   ++
Sbjct: 562 VMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKIL-DAMEVVGVETDIVTYS 620

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +L+ G    G ++  L +  EM R  ++ +   Y  +++ LF+AGR         EM E 
Sbjct: 621 TLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIES 680

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           G       Y  ++ G C+    + A  +  ++G    K +    N ++  + K
Sbjct: 681 GTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYK 733



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 9/211 (4%)

Query: 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR--RLQPTLVTFG 191
           L RM EL  +      P+  SY+I++ G   +   + A  +F  M K      P +V + 
Sbjct: 216 LHRMSELGCV------PNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYN 269

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           T+I+G   E    +A  L  ++ R   VKPD   +  +I  LC    +  A  V  +M  
Sbjct: 270 TVIHGFFKEGETGKACSLFHEMTR-QGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTT 328

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
           +  + D   Y+ +I      GR  E   + ++MK RG  PN V  N+ ++  CK    + 
Sbjct: 329 NGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKE 388

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           A  I D M  KG K + +SY  +L G   +G
Sbjct: 389 AAEIFDSMTAKGHKPDIVSYCTLLHGYASEG 419



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 94/192 (48%), Gaps = 2/192 (1%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +Y+IL+  C  +RR +    +F  +++  L+   +T  TL+  LC   R +EA+ +    
Sbjct: 159 TYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVLLHR 218

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI--YSSLISALFKA 271
           M      P+   ++ ++KGLC       AL + + M ++       +  Y+++I   FK 
Sbjct: 219 MSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKE 278

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G   +  ++  EM  +G KP+ VTYN +I   CK    + A  +L +M   G + + ++Y
Sbjct: 279 GETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTY 338

Query: 332 NVILGGLCKDGK 343
           N ++ G    G+
Sbjct: 339 NCMIHGYATLGR 350



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 109/244 (44%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F +VI    +   +  A  +FD ++    +  V  F +L++     GK+D+  ++
Sbjct: 544 PDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKI 603

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
              ME   V  D  +Y+ L+ G   + R+ D   +F EM ++ ++P  VT+G ++ GL  
Sbjct: 604 LDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFR 663

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R   A K   +++          ++  ++ GLC       A+ + +++    ++    
Sbjct: 664 AGRTVAARKKFHEMIE-SGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSIT 722

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           I +++I+A++K  RK E   +   +   G  PN  TY  +I    K+   E A  +   M
Sbjct: 723 ILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSM 782

Query: 320 GDKG 323
              G
Sbjct: 783 EKSG 786


>gi|297610666|ref|NP_001064867.2| Os10g0479200 [Oryza sativa Japonica Group]
 gi|255679497|dbj|BAF26781.2| Os10g0479200 [Oryza sativa Japonica Group]
          Length = 818

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 141/253 (55%), Gaps = 8/253 (3%)

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP-KLTCGKLDRMKELFQIMEKY-VSP 150
           Y RA+++  AL +  +MSS N+Q++V  +++LL+  ++T    D   ELF+ ME   VSP
Sbjct: 161 YARAQMVHDALYVLSKMSSLNMQISVFTYDSLLHGLRMT----DVALELFEEMESCGVSP 216

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKR-RLQPTLVTFGTLIYGLCLELRVDEALKL 209
              S++I+I+G     ++ +A     E  K  + +P  +TF  L+  LC    V  A K 
Sbjct: 217 SEYSHSIIINGLCKQDKVGEALSFLQEARKEGKFKPLGMTFNILMSALCNWGFVQSA-KS 275

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
              +M  Y + PD   F++LI GLC VG +  AL + E + ++ +E++   Y+SLI+   
Sbjct: 276 FLCLMLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYNSLINGYR 335

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
             G   E P I++ M+ +G +P+ VTY  LI+G C+  D E    +  ++ D+G + N +
Sbjct: 336 LLGLTKEIPKIIQMMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVLDQGLQLNIV 395

Query: 330 SYNVILGGLCKDG 342
           +Y+V+L  L K G
Sbjct: 396 TYSVLLNALFKKG 408



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 158/308 (51%), Gaps = 10/308 (3%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +  + N++ Y +++  L +  MF E+  +L ++ ++  +    I +  +I  Y +   +E
Sbjct: 388 QGLQLNIVTYSVLLNALFKKGMFCEIDNLLGEI-YNIGLDMDVIAYSILIHGYCKLGEIE 446

Query: 101 RALQMFDEMSSFNVQM--TVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL 158
           +ALQ+ + M S    M  ++  F+ LL        ++    L  +  KY   D   YN++
Sbjct: 447 KALQVCNAMCSSQRVMPTSLNHFSILLGLCKKGLLVEARWYLENVARKYQPTDVVFYNVV 506

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G      + +A +++D++    + PT+VT  +L+YG C   ++ + L+L E   R   
Sbjct: 507 IDGYAKLGDIVNAVRLYDQITVAGMHPTIVTCNSLLYGYC---KIGD-LQLAESYFRAIQ 562

Query: 219 VK---PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
           +    P    + +L+  L   GE++  L + +EMV  +I+ +A  YS ++  L K  R +
Sbjct: 563 LSGLLPTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIVKGLCKQLRFD 622

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E   +LK+M  +G   + +TYN LI GFC+ E+ + AF I D M  +G    P++YN+++
Sbjct: 623 EAINVLKDMDSKGINADPITYNTLIQGFCESENVQMAFHIHDIMLCRGLVPTPVTYNLLI 682

Query: 336 GGLCKDGK 343
             LC  GK
Sbjct: 683 NVLCLKGK 690



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 127/262 (48%), Gaps = 3/262 (1%)

Query: 81  PKEIIFCNV-IGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P +++F NV I  Y +   +  A++++D+++   +  T+   N+LL      G L   + 
Sbjct: 497 PTDVVFYNVVIDGYAKLGDIVNAVRLYDQITVAGMHPTIVTCNSLLYGYCKIGDLQLAES 556

Query: 140 LFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            F+ ++   + P A +Y  L+     +  +     +FDEMV +R++   VT+  ++ GLC
Sbjct: 557 YFRAIQLSGLLPTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIVKGLC 616

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
            +LR DEA+ + +D M    +  D   + +LI+G C    + +A  + + M+   +    
Sbjct: 617 KQLRFDEAINVLKD-MDSKGINADPITYNTLIQGFCESENVQMAFHIHDIMLCRGLVPTP 675

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y+ LI+ L   G+  +   +L+ ++E G K     Y  LI   C +     A  ++ +
Sbjct: 676 VTYNLLINVLCLKGKVIQAEILLESLRENGIKLRKFAYTTLIKAQCAKGMPINAVLLVGK 735

Query: 319 MGDKGCKANPISYNVILGGLCK 340
           + D G +A+   ++  +  LCK
Sbjct: 736 LLDAGFEASIEDFSAAINRLCK 757



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 104/200 (52%), Gaps = 2/200 (1%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           FN L++     G +   K    +M KY + PD  +++ LIHG      +E+A  +F+ + 
Sbjct: 257 FNILMSALCNWGFVQSAKSFLCLMLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVT 316

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           K  ++  +VT+ +LI G  L     E  K+ + +MR   V+PD   +  LI G C  G++
Sbjct: 317 KEGMELEIVTYNSLINGYRLLGLTKEIPKIIQ-MMRGQGVEPDLVTYTILIAGHCESGDV 375

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
              + V+++++   ++++   YS L++ALFK G   E   +L E+   G   + + Y+ L
Sbjct: 376 EEGMKVRKDVLDQGLQLNIVTYSVLLNALFKKGMFCEIDNLLGEIYNIGLDMDVIAYSIL 435

Query: 300 ISGFCKEEDFEAAFTILDEM 319
           I G+CK  + E A  + + M
Sbjct: 436 IHGYCKLGEIEKALQVCNAM 455



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 125/268 (46%), Gaps = 7/268 (2%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           +VP    F  +I    +   +E AL +F+ ++   +++ +  +N+L+N     G    + 
Sbjct: 285 LVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYNSLINGYRLLGLTKEIP 344

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           ++ Q+M  + V PD  +Y ILI G   S  +E+  KV  +++ + LQ  +VT+  L+  L
Sbjct: 345 KIIQMMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVLDQGLQLNIVTYSVLLNAL 404

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFAS--LIKGLCAVGELSLALGVKEEMVRDKIE 255
               +     ++   +  +YN+  D  V A   LI G C +GE+  AL V   M   +  
Sbjct: 405 ---FKKGMFCEIDNLLGEIYNIGLDMDVIAYSILIHGYCKLGEIEKALQVCNAMCSSQRV 461

Query: 256 MDAGI-YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           M   + + S++  L K G   E    L+ +  +    + V YN +I G+ K  D   A  
Sbjct: 462 MPTSLNHFSILLGLCKKGLLVEARWYLENVARKYQPTDVVFYNVVIDGYAKLGDIVNAVR 521

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDG 342
           + D++   G     ++ N +L G CK G
Sbjct: 522 LYDQITVAGMHPTIVTCNSLLYGYCKIG 549



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 112/246 (45%), Gaps = 13/246 (5%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           ++P  + +  ++     A  +   L +FDEM +  ++     ++ ++  K  C +L R  
Sbjct: 566 LLPTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIV--KGLCKQL-RFD 622

Query: 139 ELFQIME----KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           E   +++    K ++ D  +YN LI G   S  ++ A+ + D M+ R L PT VT+  LI
Sbjct: 623 EAINVLKDMDSKGINADPITYNTLIQGFCESENVQMAFHIHDIMLCRGLVPTPVTYNLLI 682

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
             LCL+ +V +A  L E  +R   +K     + +LIK  CA G    A+ +  +++    
Sbjct: 683 NVLCLKGKVIQAEILLES-LRENGIKLRKFAYTTLIKAQCAKGMPINAVLLVGKLLDAGF 741

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF-----CKEEDF 309
           E     +S+ I+ L K     E    +  M   G  P++  Y  L          K +D 
Sbjct: 742 EASIEDFSAAINRLCKRQFAKEAFMFVPIMLSVGIYPDTQIYCVLGRALQKNRTGKTQDL 801

Query: 310 EAAFTI 315
           EA ++I
Sbjct: 802 EARWSI 807


>gi|115466100|ref|NP_001056649.1| Os06g0125300 [Oryza sativa Japonica Group]
 gi|6983867|dbj|BAA90802.1| salt-inducible protein-like [Oryza sativa Japonica Group]
 gi|113594689|dbj|BAF18563.1| Os06g0125300 [Oryza sativa Japonica Group]
 gi|125553869|gb|EAY99474.1| hypothetical protein OsI_21443 [Oryza sativa Indica Group]
 gi|125595884|gb|EAZ35664.1| hypothetical protein OsJ_19951 [Oryza sativa Japonica Group]
          Length = 535

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 136/263 (51%), Gaps = 6/263 (2%)

Query: 84  IIFCNVI--GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
           ++ CN++  G  G   L + AL++ DEM    +   V  + T+L+     G ++  ++LF
Sbjct: 193 LVSCNILLKGLVGIGDL-DAALKVLDEMPGLGITPDVVTYTTVLSAYCGKGDIEGAQKLF 251

Query: 142 Q-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
             I+     PD   Y +LI G      L+DA ++ DEM   R+QP  VT+  +I   C E
Sbjct: 252 DDIIASGRRPDVTMYTVLIDGYCQCGNLQDAARIMDEMEAARVQPNEVTYSVVIEACCKE 311

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            +  EA     +++    V PD  + A ++  LC  G+   A  +   M +  +  D  +
Sbjct: 312 EKPIEARDFMREMLGAGYV-PDTALGAKVVDVLCQDGKSEEAYQLWRWMEKKNVPPDNMV 370

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
            S+LI  L K G   E   +  E+ ERG KP+ +TYN+LISG C+ E+ + A  + D+M 
Sbjct: 371 TSTLIYWLCKNGMVREARNLFDEL-ERGFKPSLLTYNSLISGLCENEELQEAGRVWDDMV 429

Query: 321 DKGCKANPISYNVILGGLCKDGK 343
           ++G + N ++Y  ++ GLCK GK
Sbjct: 430 ERGYEPNAMTYEALIKGLCKTGK 452



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 127/293 (43%), Gaps = 46/293 (15%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           K+ DEM  +         I P  + +  V+  Y     +E A ++FD++ +   +  V  
Sbjct: 214 KVLDEMPGL--------GITPDVVTYTTVLSAYCGKGDIEGAQKLFDDIIASGRRPDVTM 265

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC------VVSR------- 166
           +  L++    CG L     +   ME   V P+  +Y+++I  C      + +R       
Sbjct: 266 YTVLIDGYCQCGNLQDAARIMDEMEAARVQPNEVTYSVVIEACCKEEKPIEARDFMREML 325

Query: 167 ----------------------RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
                                 + E+A++++  M K+ + P  +   TLIY LC    V 
Sbjct: 326 GAGYVPDTALGAKVVDVLCQDGKSEEAYQLWRWMEKKNVPPDNMVTSTLIYWLCKNGMVR 385

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           EA  L +++ R +  KP    + SLI GLC   EL  A  V ++MV    E +A  Y +L
Sbjct: 386 EARNLFDELERGF--KPSLLTYNSLISGLCENEELQEAGRVWDDMVERGYEPNAMTYEAL 443

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           I  L K G+ NE   + +EM  RGCKP+S+ +  L+    +    +    IL+
Sbjct: 444 IKGLCKTGKPNEGATVFEEMVSRGCKPSSLLFQVLVDSLSEPRHEDTIRKILE 496


>gi|242095134|ref|XP_002438057.1| hypothetical protein SORBIDRAFT_10g007440 [Sorghum bicolor]
 gi|241916280|gb|EER89424.1| hypothetical protein SORBIDRAFT_10g007440 [Sorghum bicolor]
          Length = 499

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 129/228 (56%), Gaps = 5/228 (2%)

Query: 121 FNTLLNPKLTCGKLDRM-KELFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEM 178
            + L++ +   G LD +  +L     KY+  P+ C YNILI   V    LE A+KV DEM
Sbjct: 152 LDRLVSSRGCHGVLDELLSDLRDPRNKYLPRPNTCVYNILIKHFVRIGELETAFKVLDEM 211

Query: 179 VKRR---LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
            +     ++P LVT+ TLI GLC   ++ EA +L E+++    + PD  ++  +I G C 
Sbjct: 212 REYTCADVKPNLVTYSTLIAGLCRGGKMMEAFELFEEMIEKDRIVPDQLLYNVIIDGFCR 271

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
           +G++  A  +   M ++  E +A  Y++LI+   K        ++ +EM+  G +P++V+
Sbjct: 272 LGQVDKARAIFGFMKKNDCEPNAFNYATLINGHCKKADIEAARSVFEEMRNAGVEPDAVS 331

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y ALI   C+    + A  ++ EM  KGC+A+ ++YN+++ GLC+DG+
Sbjct: 332 YTALIGCLCRHGSVDEAINLVLEMKQKGCRADVVTYNLVIEGLCRDGR 379



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 128/274 (46%), Gaps = 4/274 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ Y  +I  L R     E  ++  ++    RIVP ++++  +I  + R   +++A  +
Sbjct: 222 NLVTYSTLIAGLCRGGKMMEAFELFEEMIEKDRIVPDQLLYNVIIDGFCRLGQVDKARAI 281

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           F  M   + +     + TL+N       ++  + +F+ M    V PDA SY  LI GC+ 
Sbjct: 282 FGFMKKNDCEPNAFNYATLINGHCKKADIEAARSVFEEMRNAGVEPDAVSYTALI-GCLC 340

Query: 165 SR-RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
               +++A  +  EM ++  +  +VT+  +I GLC + R  EA+ L E +  +  VK + 
Sbjct: 341 RHGSVDEAINLVLEMKQKGCRADVVTYNLVIEGLCRDGRTVEAMDLLESV-PLEGVKLNV 399

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             +  L+  LC+ GE+  A+G+   M+           ++L+  L  AGR  +    L  
Sbjct: 400 ASYRILMNCLCSRGEMDKAVGLLGLMLGRGFLPHYAASNNLLIGLCDAGRIADATMALYG 459

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           + + G  P +  +  L+   C+E     +  +LD
Sbjct: 460 LADAGFMPEARCWERLVETMCRERKQRRSTELLD 493



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 139/304 (45%), Gaps = 5/304 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT--RIVPKEIIFCNVIGFYGRARLLER 101
           R N   Y+++I    R    +   ++L +++  T   + P  + +  +I    R   +  
Sbjct: 182 RPNTCVYNILIKHFVRIGELETAFKVLDEMREYTCADVKPNLVTYSTLIAGLCRGGKMME 241

Query: 102 ALQMFDEMSSFNVQMTVKF-FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
           A ++F+EM   +  +  +  +N +++     G++D+ + +F  M+K    P+A +Y  LI
Sbjct: 242 AFELFEEMIEKDRIVPDQLLYNVIIDGFCRLGQVDKARAIFGFMKKNDCEPNAFNYATLI 301

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +G      +E A  VF+EM    ++P  V++  LI  LC    VDEA+ L  + M+    
Sbjct: 302 NGHCKKADIEAARSVFEEMRNAGVEPDAVSYTALIGCLCRHGSVDEAINLVLE-MKQKGC 360

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           + D   +  +I+GLC  G    A+ + E +  + ++++   Y  L++ L   G  ++   
Sbjct: 361 RADVVTYNLVIEGLCRDGRTVEAMDLLESVPLEGVKLNVASYRILMNCLCSRGEMDKAVG 420

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +L  M  RG  P+    N L+ G C       A   L  + D G       +  ++  +C
Sbjct: 421 LLGLMLGRGFLPHYAASNNLLIGLCDAGRIADATMALYGLADAGFMPEARCWERLVETMC 480

Query: 340 KDGK 343
           ++ K
Sbjct: 481 RERK 484


>gi|297827231|ref|XP_002881498.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327337|gb|EFH57757.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 756

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 158/315 (50%), Gaps = 15/315 (4%)

Query: 38  HPLKPFRYN----LLHYDLIITKLGRAKMFDEMQQILHQ----LKHDTRIVP-KEIIFCN 88
           H L+ FR+     L+ +D   T +   KM  E+Q++ H     L    + VP  E +F  
Sbjct: 131 HALQFFRWTERSGLIRHDRD-THMKMIKMLGEVQKLNHARCILLDMPEKGVPWDEDMFVV 189

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKY 147
           +I  YG+A +++ ++++F +M    V+ T+K +NTL    L  G+    K  F +++ + 
Sbjct: 190 LIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNTLFKVILRRGRYMMAKRYFNKMVSEG 249

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           V P   +YN+++ G  +S RLE A + FD+M  R + P  VT+ T+I G C   ++DEA 
Sbjct: 250 VEPTRHTYNLMLWGFFLSLRLETALRFFDDMKTRGISPDAVTYNTIINGYCRFKKMDEAE 309

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           KL  + M+  N +P    + ++IKG  +V  +   L + EEM    IE +A  YS+L+  
Sbjct: 310 KLFVE-MKGNNSEPSVVTYTTMIKGYLSVDRVDDGLRIFEEMRSFGIEPNATTYSTLLPG 368

Query: 268 LFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
           L   G+  E   ILK M  +   P  NS+    L+S   K  D  AA  +L  M      
Sbjct: 369 LCDVGKMVEAKNILKNMMAKHIAPKDNSIFLKLLVSQ-SKAGDMAAATEVLKAMATLNVP 427

Query: 326 ANPISYNVILGGLCK 340
           A    Y V++   CK
Sbjct: 428 AEAGHYGVLIENQCK 442



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 127/297 (42%), Gaps = 46/297 (15%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS- 149
           GF+   RL E AL+ FD+M +  +      +NT++N      K+D  ++LF  M+   S 
Sbjct: 263 GFFLSLRL-ETALRFFDDMKTRGISPDAVTYNTIINGYCRFKKMDEAEKLFVEMKGNNSE 321

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P   +Y  +I G +   R++D  ++F+EM    ++P   T+ TL+ GLC   ++ EA  +
Sbjct: 322 PSVVTYTTMIKGYLSVDRVDDGLRIFEEMRSFGIEPNATTYSTLLPGLCDVGKMVEAKNI 381

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV------------------- 250
            +++M  +    D  +F  L+      G+++ A  V + M                    
Sbjct: 382 LKNMMAKHIAPKDNSIFLKLLVSQSKAGDMAAATEVLKAMATLNVPAEAGHYGVLIENQC 441

Query: 251 ------------------------RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
                                   +D +EM+   Y+ +I  L   G+  +   + +++ +
Sbjct: 442 KASAYNRAIKLLDTLIEKEIILRHQDTLEMEPSAYNPIIEYLCNNGQTAKAEVLFRQLMK 501

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           RG +      N LI G  KE + E+++ IL  M  +G      +Y +++      G+
Sbjct: 502 RGVQDQDA-LNNLIRGHAKEGNPESSYEILKIMSRRGVPREANAYELLIKSYMSKGE 557



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 135/306 (44%), Gaps = 15/306 (4%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ II    R K  DE +++  ++K +    P  + +  +I  Y     ++  L++F+EM
Sbjct: 292 YNTIINGYCRFKKMDEAEKLFVEMKGNNS-EPSVVTYTTMIKGYLSVDRVDDGLRIFEEM 350

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRL 168
            SF ++     ++TLL      GK+   K + + +M K+++P   S  I +   V   + 
Sbjct: 351 RSFGIEPNATTYSTLLPGLCDVGKMVEAKNILKNMMAKHIAPKDNS--IFLKLLVSQSKA 408

Query: 169 ED---AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL------KEDIMRVYN- 218
            D   A +V   M    +      +G LI   C     + A+KL      KE I+R  + 
Sbjct: 409 GDMAAATEVLKAMATLNVPAEAGHYGVLIENQCKASAYNRAIKLLDTLIEKEIILRHQDT 468

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           ++ +   +  +I+ LC  G+ + A  +  ++++  ++ D    ++LI    K G      
Sbjct: 469 LEMEPSAYNPIIEYLCNNGQTAKAEVLFRQLMKRGVQ-DQDALNNLIRGHAKEGNPESSY 527

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            ILK M  RG    +  Y  LI  +  + +   A T LD M + G   +   +  ++  L
Sbjct: 528 EILKIMSRRGVPREANAYELLIKSYMSKGEPGDAKTALDSMVEDGHVPDSALFRSVIESL 587

Query: 339 CKDGKC 344
            +DG+ 
Sbjct: 588 FEDGRV 593


>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia seriphioides]
          Length = 414

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 137/258 (53%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++  Y R   L+   ++   M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 158 PSVVSYNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANEL 217

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++   + P   ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 218 FDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 277

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L  + M +   KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 278 KGBLKQAHVLIXE-MSLKGXKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDV 336

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP++ TY  +I+ FCK+ D      +L EM
Sbjct: 337 AYTALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTYTMIINEFCKKGDVWTGSKLLKEM 396

Query: 320 GDKGCKANPISYNVILGG 337
              G   + ++YNV++ G
Sbjct: 397 QRDGHVPSVVTYNVLMNG 414



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 123/228 (53%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G +   + +F  + K+ + P   SYN L+ G +    L++ +++ 
Sbjct: 124 SLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDLDEGFRLK 183

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
             M    +QP + T+  LI GLC E ++DEA +L ++ M V  + P G  F +LI G C 
Sbjct: 184 SAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDE-MLVXGLVPXGVTFTTLIDGHCK 242

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 243 NGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKIT 302

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D + AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 303 YTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGR 350



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 134/264 (50%), Gaps = 3/264 (1%)

Query: 81  PKEIIFCNVIGF-YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F N++   + +   +  A  +FD ++ + ++ +V  +NTL++  +  G LD    
Sbjct: 122 PASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDLDEGFR 181

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L   M    V PD  +Y++LI+G     ++++A ++FDEM+   L P  VTF TLI G C
Sbjct: 182 LKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHC 241

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              RVD A+++ + ++   ++ PD   + +LI GLC  G+L  A  +  EM     + D 
Sbjct: 242 KNGRVDLAMEIYKQMLS-QSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDK 300

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y++LI    K G  +      K M +   + + V Y ALISG C+E     A  +L E
Sbjct: 301 ITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLRE 360

Query: 319 MGDKGCKANPISYNVILGGLCKDG 342
           M   G K +  +Y +I+   CK G
Sbjct: 361 MLSVGXKPDTRTYTMIINEFCKKG 384



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  +E++          ++ L+    K G      ++   + + G +P+ V+YN L+
Sbjct: 108 LVWGFYQEILECGYPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLM 167

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           SG+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 168 SGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXK 210


>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
 gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           virgata]
          Length = 418

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 136/251 (54%), Gaps = 2/251 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y R   L+   ++   M +  VQ  V  ++ L+N      K+D    L
Sbjct: 169 PSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANGL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++K + P+  ++  LI G   +RR++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 289 KGDLKQAHDLIDE-MSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP++ TY  +I+ FCK+ D      +L EM
Sbjct: 348 AYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEM 407

Query: 320 GDKGCKANPIS 330
              G   + +S
Sbjct: 408 QRDGHVPSVVS 418



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 126/239 (52%), Gaps = 2/239 (0%)

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV 163
           +F+ ++ + ++ +V  FNTL+N  +  G LD    L   M    V PD  +Y++LI+G  
Sbjct: 158 VFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLC 217

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              +++DA  +FDEM+ + L P  VTF TLI G C   RVD A+++ + ++   ++ PD 
Sbjct: 218 KESKMDDANGLFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQMLS-QSLSPDL 276

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +LI GLC  G+L  A  + +EM    ++ D   Y++LI    K G         K 
Sbjct: 277 ITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKR 336

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           M +   + + V Y ALISG C+E  +  A  +L EM   G K +  +Y +I+   CK G
Sbjct: 337 MIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKG 395



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 127/239 (53%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   S+N L++G + 
Sbjct: 124 YEEILDCGYPASLYFFNILMHRFCKEGDIRVAQLVFNAITKWGLRPSVVSFNTLMNGYIR 183

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++ +++   M    +QP + T+  LI GLC E ++D+A  L ++++    + P+G 
Sbjct: 184 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLD-KGLVPNGV 242

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C    + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM
Sbjct: 243 TFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEM 302

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G KP+ +TY  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 303 SMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGR 361



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 110/222 (49%), Gaps = 2/222 (0%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           H + + P    +  +I    +   ++ A  +FDEM    +      F TL+       ++
Sbjct: 198 HASGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLIAGHCKNRRV 257

Query: 135 DRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           D   E++ Q++ + +SPD  +YN LI+G      L+ A  + DEM  + L+P  +T+ TL
Sbjct: 258 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTL 317

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G C E  ++ A + ++ +++  N++ D   + +LI GLC  G    A  V  EM+   
Sbjct: 318 IDGCCKEGDLETAFEHRKRMIQE-NIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSVG 376

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
           ++ D G Y+ +I+   K G       +LKEM+  G  P+ V+
Sbjct: 377 LKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVS 418



 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 49/103 (47%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G       +   + + G +P+ V++N L+
Sbjct: 119 LVWGFYEEILDCGYPASLYFFNILMHRFCKEGDIRVAQLVFNAITKWGLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESK 221


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 143/293 (48%), Gaps = 3/293 (1%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS 110
           + ++  L +  M  E   ++  + H   + P  + +  ++  +     ++ A+++FD M 
Sbjct: 284 NTVVDALCKEGMVAEAHDVVDMMIH-RGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMV 342

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLE 169
             +    V  +NTL+N       +D+   LF+ M +  ++P+  +YN LIHG     RL+
Sbjct: 343 HKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQ 402

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           DA  +F EMV R   P LVT+ TL   LC    +D+A+ L + I    N  PD Q++ ++
Sbjct: 403 DAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAI-EGSNWDPDIQIYTTI 461

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           + G+C  GEL  A  +   +    ++ +   Y+ +I  L K G   E   +  EM + GC
Sbjct: 462 LDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGC 521

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            PN  TYN +  GF +  +      +L+EM  +G   +  +  +++G L  DG
Sbjct: 522 SPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG 574



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 129/295 (43%), Gaps = 35/295 (11%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMKE 139
           P  + F  ++    + +     L +  +M SF +   V     ++N      ++D     
Sbjct: 68  PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSA 127

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L +I++    PDA ++  LI G  V  ++ +A  +FD+M+    QP +VT+GTLI GLC 
Sbjct: 128 LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 187

Query: 200 ELRVDEALKL-------------------------KEDIMRVYNV---------KPDGQV 225
                 A++L                            +   +N+          P+   
Sbjct: 188 VGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVT 247

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + SLI GLC + E      +  EMV  KI  D    ++++ AL K G   E   ++  M 
Sbjct: 248 YNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMI 307

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            RG +PN VTYNAL+ G C   + + A  + D M  K C AN ISYN ++ G CK
Sbjct: 308 HRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCK 362



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 146/299 (48%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ +I  L +   +  +  +++++  D++I+P       V+    +  ++  A  +
Sbjct: 244 NIVTYNSLIHGLCKLCEWKHVTTLMNEMV-DSKIMPDVFTLNTVVDALCKEGMVAEAHDV 302

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            D M    V+  V  +N L++      ++D   ++F  M  K    +  SYN LI+G   
Sbjct: 303 VDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCK 362

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            + ++ A  +F+EM ++ L P  VT+ TLI+GLC   R+ +A+ L  +++    + PD  
Sbjct: 363 IQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQI-PDLV 421

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +L   LC    L  A+ + + +     + D  IY++++  + +AG   +   +   +
Sbjct: 422 TYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNL 481

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G +PN  TYN +I G CK+     A  +  EM   GC  N  +YN+I  G  ++ +
Sbjct: 482 SSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNE 540



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 123/245 (50%), Gaps = 2/245 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           L+ AL  F+ M       +   FN LL           +  L + M+ + + PD  +  I
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I+      R++ A+    +++K   QP   TF TLI GLC+E ++ EAL L  D M   
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLF-DKMIGE 169

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             +P+   + +LI GLC VG  S A+ +   M +   + +  ++S+LI +L K  +  E 
Sbjct: 170 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEA 229

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             I  EM  +G  PN VTYN+LI G CK  +++   T+++EM D     +  + N ++  
Sbjct: 230 FNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDA 289

Query: 338 LCKDG 342
           LCK+G
Sbjct: 290 LCKEG 294



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 107/220 (48%), Gaps = 2/220 (0%)

Query: 122 NTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           NT  +  L    LD     F +++ K   P    +N L+     ++       +  +M  
Sbjct: 39  NTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDS 98

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
             + P + T   +I  LC   RVD A      I+++ + +PD   F +LI+GLC  G++ 
Sbjct: 99  FGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGH-QPDATTFTTLIRGLCVEGKIG 157

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            AL + ++M+ +  + +   Y +LI+ L K G  +    +L+ M++  C+PN V ++ LI
Sbjct: 158 EALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLI 217

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
              CK+     AF I  EM  KG   N ++YN ++ GLCK
Sbjct: 218 DSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCK 257


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 141/306 (46%), Gaps = 3/306 (0%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           P K  + N + Y  +I  L  A   +E  ++   +  D            +    G  R 
Sbjct: 256 PQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRK 315

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
           +E AL +F+EM     +  V  +  L++      K+D  +++   M EK + P   +YN 
Sbjct: 316 VE-ALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNA 374

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G      ++DA+++ D M      P   T+  LI GLC + +V +A+ L   ++   
Sbjct: 375 LIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLE-R 433

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + P    + SLI G C V +L  A  +   M  + +  D   YS  I  L K GR  E 
Sbjct: 434 KLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEA 493

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +   +K +G K N V Y ALI G+CK    + A+++L+ M +  C  N  +YNV++ G
Sbjct: 494 GTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEG 553

Query: 338 LCKDGK 343
           LCK+ K
Sbjct: 554 LCKEKK 559



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 162/331 (48%), Gaps = 32/331 (9%)

Query: 17  DPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI-LHQLKH 75
           DP+ AL  F      P          F++N+  Y  ++  L RA++    ++I +  +K 
Sbjct: 80  DPQTALSFFNWIALRPG---------FKHNVHSYSSMLNILIRARLLGVAEKIRISMIKS 130

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS---FNVQMTVKFFNTLLNPKLTCG 132
              I  ++++F                L++F +M++   F  + T++ +NT+L       
Sbjct: 131 CCSI--EDVLF---------------VLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFL 173

Query: 133 KLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
            +D MK ++ +++   +SP+  ++N +++G      + +A     ++V+  L P   T+ 
Sbjct: 174 LIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYT 233

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           +LI G C    VD A ++   IM     + +   + +LI GLC  G ++ AL +  +M  
Sbjct: 234 SLILGHCRNKGVDNAYEVFL-IMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTE 292

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
           D        Y+ LI AL  +GRK E   +  EMKE+GC+PN  TY  LI G CKE   + 
Sbjct: 293 DNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDE 352

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           A  +L EM +KG   + ++YN ++ G CK+G
Sbjct: 353 ARKMLSEMSEKGLIPSVVTYNALIDGYCKEG 383



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 130/245 (53%), Gaps = 2/245 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNI 157
           ++ A +M  EMS   +  +V  +N L++     G +D   E+  +ME     P+  +YN 
Sbjct: 350 MDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNE 409

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G    R++  A  + ++M++R+L P+L+T+ +LI+G C    ++ A +L   +M   
Sbjct: 410 LICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLL-SLMNEN 468

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + PD   ++  I  LC  G +  A  + + +    ++ +  IY++LI    K G+ +  
Sbjct: 469 GLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVA 528

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            ++L+ M    C PNS TYN LI G CKE+  + A +++ +M   G K   ++Y +++G 
Sbjct: 529 YSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGE 588

Query: 338 LCKDG 342
           + KDG
Sbjct: 589 MLKDG 593



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 145/303 (47%), Gaps = 13/303 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y ++I  L +    DE +++L ++  +  ++P  + +  +I  Y +  +++ A ++
Sbjct: 333 NVHTYTVLIDGLCKENKMDEARKMLSEMS-EKGLIPSVVTYNALIDGYCKEGMIDDAFEI 391

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR------MKELFQIMEKYVSPDACSYNILI 159
            D M S +     + +N L+     CG   +      M  L +++E+ +SP   +YN LI
Sbjct: 392 LDLMESNSCGPNTRTYNELI-----CGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLI 446

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           HG      LE A+++   M +  L P   T+   I  LC E RV+EA  L  D ++   V
Sbjct: 447 HGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLF-DSVKAKGV 505

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           K +  ++ +LI G C VG++ +A  + E M+ D    ++  Y+ LI  L K  +  E  +
Sbjct: 506 KANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASS 565

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           ++ +M   G KP  VTY  LI    K+  F+ A  + + M   G + +  +Y   L    
Sbjct: 566 LVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYF 625

Query: 340 KDG 342
             G
Sbjct: 626 SQG 628



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 134/299 (44%), Gaps = 9/299 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y+++I  L + K   E   ++ ++     + P  + +  +IG   +    + AL++
Sbjct: 543 NSYTYNVLIEGLCKEKKMKEASSLVAKML-TMGVKPTVVTYTILIGEMLKDGAFDHALKV 601

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F+ M S   Q  V  +   L+   + G L+ + ++   M E+ + PD  +Y +LI G   
Sbjct: 602 FNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYAR 661

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
                 A+     MV    +P+L     LI  L  E R+ E  + +  I  V NV  +  
Sbjct: 662 LGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKET-RSEIGIDSVSNV--NSV 718

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
             A + K L    E  +AL + E+MV     +D  IY +LI+   +  R  E   ++  M
Sbjct: 719 DIADVWKTL----EYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHM 774

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           KERG  P+   YN+L+   CK   +  A  ++D M + G      SY +++ GL  +G 
Sbjct: 775 KERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGS 833



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 131/299 (43%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y+ +I  L + +   +   +L+++  + ++ P  I + ++I    +   LE A ++
Sbjct: 403 NTRTYNELICGLCKKRKVHKAMALLNKML-ERKLSPSLITYNSLIHGQCKVNDLESAYRL 461

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
              M+   +      ++  ++     G+++    LF  +  K V  +   Y  LI G   
Sbjct: 462 LSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCK 521

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +++ A+ + + M+     P   T+  LI GLC E ++ EA  L   ++ +  VKP   
Sbjct: 522 VGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTM-GVKPTVV 580

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LI  +   G    AL V   MV    + D   Y++ + A F  G   E   ++ +M
Sbjct: 581 TYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKM 640

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            E G  P+ VTY  LI G+ +      AF  L  M D GCK +    ++++  L  + +
Sbjct: 641 NEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENR 699


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 152/311 (48%), Gaps = 9/311 (2%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D   HP      N++ ++++I  L +A   +E   +L +L       P    +  +I  +
Sbjct: 301 DEGVHP------NVVTFNVLIDALCKAGKMEEANHLL-KLMIQRGESPDTFTYNTLIDGF 353

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDA 152
                ++ A  +F  M S  ++     +N L+N     G++   K+L+ ++M K + P  
Sbjct: 354 CLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTV 413

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN L+ G     ++ DAW +F EM    L P   T+  L+ GLC    + EA++L   
Sbjct: 414 ITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFH- 472

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            +  ++ +P  Q+F  LI GLC   ++ +A  +   +  + +E +   Y+ +I  L K+G
Sbjct: 473 YLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSG 532

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           +      +   M+E+GC PN VT+N L+ GFC+ ++ +    +L EM +K    +  + +
Sbjct: 533 QLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTIS 592

Query: 333 VILGGLCKDGK 343
           +++  L KD K
Sbjct: 593 IVVDLLSKDEK 603



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 140/309 (45%), Gaps = 41/309 (13%)

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           D +  P    F  ++G   + +     + ++  MS   +       N L+N      K+D
Sbjct: 85  DMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVD 144

Query: 136 -RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
             +  L +++ +  SP+  ++  L+ G  +  R+ +A  +  +MV+   +P +VT+GTL+
Sbjct: 145 FGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLL 204

Query: 195 YGLCLELRVDEALKLKEDI----------------------------------------M 214
            GLC+      A+KL E++                                        M
Sbjct: 205 NGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEM 264

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           +   + PD   ++S+I G+C  G    A G+  EMV + +  +   ++ LI AL KAG+ 
Sbjct: 265 KGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKM 324

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            E   +LK M +RG  P++ TYN LI GFC E   + A  +   M  KG + + +SYNV+
Sbjct: 325 EEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVL 384

Query: 335 LGGLCKDGK 343
           + G CK G+
Sbjct: 385 INGYCKSGR 393



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 7/180 (3%)

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A+ VF+ ++  +  P + +F TL+  +    R  + + L +  M +  + PD      
Sbjct: 74  SEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKR-MSLIGLAPDFITLNI 132

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI   C + ++   L V  EM+R     +   ++SL+  L    R +E   +L++M   G
Sbjct: 133 LINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMG 192

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEM--GDKG----CKANPISYNVILGGLCKDG 342
            +PN VTY  L++G C   +   A  + +EM  G+ G     K N + Y  I+  LCKDG
Sbjct: 193 YRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDG 252



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 110/249 (44%), Gaps = 3/249 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K    + + Y+++I    ++    E +++  ++     I+P  I +  ++    R   + 
Sbjct: 372 KGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCK-EIMPTVITYNTLLTGLFREGKVR 430

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
            A  +F EM   ++      +N LL+       L    ELF  +E +   P    +N LI
Sbjct: 431 DAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLI 490

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G   +R++E A ++F+ +    L+P ++T+  +I+GLC   +++ A  L    M     
Sbjct: 491 DGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLG-MEEKGC 549

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   F +L++G C   E+   + + +EM       DA   S ++  L K  +  E+  
Sbjct: 550 APNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKDEKYREYLH 609

Query: 280 ILKEMKERG 288
           +L     +G
Sbjct: 610 LLPTFPAQG 618


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 141/306 (46%), Gaps = 3/306 (0%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           P K  + N + Y  +I  L  A   +E  ++   +  D            +    G  R 
Sbjct: 256 PQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRK 315

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
           +E AL +F+EM     +  V  +  L++      K+D  +++   M EK + P   +YN 
Sbjct: 316 VE-ALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNA 374

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G      ++DA+++ D M      P   T+  LI GLC + +V +A+ L   ++   
Sbjct: 375 LIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLE-R 433

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + P    + SLI G C V +L  A  +   M  + +  D   YS  I  L K GR  E 
Sbjct: 434 KLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEA 493

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +   +K +G K N V Y ALI G+CK    + A+++L+ M +  C  N  +YNV++ G
Sbjct: 494 GTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEG 553

Query: 338 LCKDGK 343
           LCK+ K
Sbjct: 554 LCKEKK 559



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 162/331 (48%), Gaps = 32/331 (9%)

Query: 17  DPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI-LHQLKH 75
           DP+ AL  F      P          F++N+  Y  ++  L RA++    ++I +  +K 
Sbjct: 80  DPQTALSFFNWIALRPG---------FKHNVHSYSSMLNILIRARLLGVAEKIRISMIKS 130

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS---FNVQMTVKFFNTLLNPKLTCG 132
              I  ++++F                L++F +M++   F  + T++ +NT+L       
Sbjct: 131 CCSI--EDVLF---------------VLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFL 173

Query: 133 KLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
            +D MK ++ +++   +SP+  ++N +++G      + +A     ++V+  L P   T+ 
Sbjct: 174 LIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYT 233

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           +LI G C    VD A ++   IM     + +   + +LI GLC  G ++ AL +  +M  
Sbjct: 234 SLILGHCRNKGVDNAYEVFL-IMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTE 292

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
           D        Y+ LI AL  +GRK E   +  EMKE+GC+PN  TY  LI G CKE   + 
Sbjct: 293 DNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDE 352

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           A  +L EM +KG   + ++YN ++ G CK+G
Sbjct: 353 ARKMLSEMSEKGLIPSVVTYNALIDGYCKEG 383



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 130/245 (53%), Gaps = 2/245 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNI 157
           ++ A +M  EMS   +  +V  +N L++     G +D   E+  +ME     P+  +YN 
Sbjct: 350 MDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNE 409

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G    R++  A  + ++M++R+L P+L+T+ +LI+G C    ++ A +L   +M   
Sbjct: 410 LICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLL-SLMNEN 468

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + PD   ++  I  LC  G +  A  + + +    ++ +  IY++LI    K G+ +  
Sbjct: 469 GLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVA 528

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            ++L+ M    C PNS TYN LI G CKE+  + A +++ +M   G K   ++Y +++G 
Sbjct: 529 YSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGE 588

Query: 338 LCKDG 342
           + KDG
Sbjct: 589 MLKDG 593



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 145/303 (47%), Gaps = 13/303 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y ++I  L +    DE +++L ++  +  ++P  + +  +I  Y +  +++ A ++
Sbjct: 333 NVHTYTVLIDGLCKENKMDEARKMLSEMS-EKGLIPSVVTYNALIDGYCKEGMIDDAFEI 391

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR------MKELFQIMEKYVSPDACSYNILI 159
            D M S +     + +N L+     CG   +      M  L +++E+ +SP   +YN LI
Sbjct: 392 LDLMESNSCGPNTRTYNELI-----CGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLI 446

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           HG      LE A+++   M +  L P   T+   I  LC E RV+EA  L  D ++   V
Sbjct: 447 HGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLF-DSVKAKGV 505

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           K +  ++ +LI G C VG++ +A  + E M+ D    ++  Y+ LI  L K  +  E  +
Sbjct: 506 KANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASS 565

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           ++ +M   G KP  VTY  LI    K+  F+ A  + + M   G + +  +Y   L    
Sbjct: 566 LVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYF 625

Query: 340 KDG 342
             G
Sbjct: 626 SQG 628



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 136/325 (41%), Gaps = 27/325 (8%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + N + Y  +I    +    D    +L ++ +D   +P    +  +I    + + ++
Sbjct: 503 KGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDA-CLPNSYTYNVLIEGLCKEKKMK 561

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
            A  +  +M +  V+ TV  +  L+   L  G  D   ++F  M      PD C+Y   +
Sbjct: 562 EASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFL 621

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG---LCLELRVDEALKLKEDIMRV 216
           H       LE+   V  +M +  + P LVT+  LI G   L L  R  + LK   D    
Sbjct: 622 HAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDT--- 678

Query: 217 YNVKPDGQVFASLIKGLC----------AVG--------ELSLALGVKEEMVRDKIEMDA 258
              KP   + + LIK L            +G        E  +AL + E+MV     +D 
Sbjct: 679 -GCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDV 737

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
            IY +LI+   +  R  E   ++  MKERG  P+   YN+L+   CK   +  A  ++D 
Sbjct: 738 SIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDA 797

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M + G      SY +++ GL  +G 
Sbjct: 798 MVENGLLPLLESYKLLVCGLYIEGS 822



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 131/299 (43%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y+ +I  L + +   +   +L+++  + ++ P  I + ++I    +   LE A ++
Sbjct: 403 NTRTYNELICGLCKKRKVHKAMALLNKML-ERKLSPSLITYNSLIHGQCKVNDLESAYRL 461

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
              M+   +      ++  ++     G+++    LF  +  K V  +   Y  LI G   
Sbjct: 462 LSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCK 521

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +++ A+ + + M+     P   T+  LI GLC E ++ EA  L   ++ +  VKP   
Sbjct: 522 VGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTM-GVKPTVV 580

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LI  +   G    AL V   MV    + D   Y++ + A F  G   E   ++ +M
Sbjct: 581 TYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKM 640

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            E G  P+ VTY  LI G+ +      AF  L  M D GCK +    ++++  L  + +
Sbjct: 641 NEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENR 699



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 144/347 (41%), Gaps = 56/347 (16%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y+++I  L + K   E   ++ ++     + P  + +  +IG   +    + AL++
Sbjct: 543 NSYTYNVLIEGLCKEKKMKEASSLVAKML-TMGVKPTVVTYTILIGEMLKDGAFDHALKV 601

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG--- 161
           F+ M S   Q  V  +   L+   + G L+ + ++   M E+ + PD  +Y +LI G   
Sbjct: 602 FNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYAR 661

Query: 162 ------------CVV--------------------------------------SRRLEDA 171
                       C+V                                      +   E A
Sbjct: 662 LGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIA 721

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIK 231
            K+F++MV+      +  +G LI G C + R++EA  L    M+   + P   ++ SL+ 
Sbjct: 722 LKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHH-MKERGMSPSEDIYNSLLD 780

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
             C +G  + A+ + + MV + +      Y  L+  L+  G   +  A+   +   G   
Sbjct: 781 CCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNY 840

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           + V +  LI G  K +  +    ++D M +KGC+ NP++Y++++ GL
Sbjct: 841 DEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGL 887


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 132/254 (51%), Gaps = 3/254 (1%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VS 149
           GF    R  E A  +F EM       ++  F  LL       + + +    Q ME Y +S
Sbjct: 45  GFLHSIRF-EDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGIS 103

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
            D  S+ ILIH      RL  A  V  +M+K   +P++VTFG+L++G CL  R+ +A  L
Sbjct: 104 HDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSL 163

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
              +M     +P+  V+ +LI GLC  GEL++AL +  EM +  +  D   Y++L++ L 
Sbjct: 164 VI-LMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLC 222

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
            +GR ++   +L++M +R   P+ VT+ ALI  F K+ + + A  +  EM       N +
Sbjct: 223 YSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNV 282

Query: 330 SYNVILGGLCKDGK 343
           +YN I+ GLC  G+
Sbjct: 283 TYNSIINGLCMHGR 296



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 145/318 (45%), Gaps = 16/318 (5%)

Query: 27  NPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF 86
           +  P P+  +   L     NL  Y+ +I        +   +  L+ + HD         F
Sbjct: 64  HSQPLPSIVDFTRLLTATANLRRYETVI--------YFSQKMELYGISHDL------YSF 109

Query: 87  CNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK 146
             +I  + R   L  AL +  +M     + ++  F +LL+      ++     L  +M K
Sbjct: 110 TILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVK 169

Query: 147 Y-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
               P+   YN LI G   +  L  A ++ +EM K+ L   +VT+ TL+ GLC   R  +
Sbjct: 170 SGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSD 229

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           A ++  D+M+  ++ PD   F +LI      G L  A  + +EM++  ++ +   Y+S+I
Sbjct: 230 AARMLRDMMK-RSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSII 288

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
           + L   GR  +       M  +GC PN VTYN LISGFCK    +    +   M  +G  
Sbjct: 289 NGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFN 348

Query: 326 ANPISYNVILGGLCKDGK 343
           A+  +YN ++ G C+ GK
Sbjct: 349 ADIFTYNTLIHGYCQVGK 366



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 2/242 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           A +M  +M   ++   V  F  L++  +  G LD  +EL+ ++++  V P+  +YN +I+
Sbjct: 230 AARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIIN 289

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G  +  RL DA K FD M  +   P +VT+ TLI G C    VDE +KL +  M      
Sbjct: 290 GLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQR-MSCEGFN 348

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
            D   + +LI G C VG+L +AL +   MV  ++  D   +  L+  L   G        
Sbjct: 349 ADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVK 408

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             +M+E       V YN +I G CK +  E A+ +   +  +G K +  +Y +++ GLCK
Sbjct: 409 FDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCK 468

Query: 341 DG 342
           +G
Sbjct: 469 NG 470



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 147/298 (49%), Gaps = 3/298 (1%)

Query: 46   NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            N++ Y+ +I  L + +  +   ++ + ++    I    + +  +I     +     A ++
Sbjct: 708  NVVIYNTVINGLCKNRDLNNALEVFYCMEKKG-IRADAVTYNTLISGLSNSGRWTDAARL 766

Query: 106  FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
              +M    +   V FF  L++  +  G L   + L+ +++ + V P+  +YN LI+G  +
Sbjct: 767  LRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCI 826

Query: 165  SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
               L DA  +FD MV +   P +VT+ TLI G C   RV++ +KL  + M    +  D  
Sbjct: 827  HGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCE-MTYQGLVGDAF 885

Query: 225  VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
             + +LI G C  G+L++A  V   MV   +  D   Y+ L+  L   G+  +   +++++
Sbjct: 886  TYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDL 945

Query: 285  KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            ++     + +TYN +I G C+ +  + A+ +   +  KG K + I+Y  ++ GLC+ G
Sbjct: 946  QKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKG 1003



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 127/265 (47%), Gaps = 2/265 (0%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMK 138
           VP  +I+  VI    + R L  AL++F  M    ++     +NTL++     G+  D  +
Sbjct: 706 VPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAAR 765

Query: 139 ELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            L  ++++ + P+   +  LI   V    L +A  ++ EM++R + P + T+ +LI G C
Sbjct: 766 LLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFC 825

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
           +   + +A K   D+M      PD   + +LI G C    +   + +  EM    +  DA
Sbjct: 826 IHGCLGDA-KYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDA 884

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y++LI    +AG+ N    +   M + G  P+ VTYN L+   C     E A  ++++
Sbjct: 885 FTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVED 944

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           +       + I+YN+I+ GLC+  K
Sbjct: 945 LQKSEMDVDIITYNIIIQGLCRTDK 969



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 142/299 (47%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ +  ++T + +   FD +  + H+++ +  I      F  +I  + R   L  AL +
Sbjct: 603 SIVDFTRVLTVIAKMNKFDIVIYLYHKME-NLGISHDLYSFTILIHCFCRCSRLSLALAL 661

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
             +M     + ++    +LLN      +      L   M+ +   P+   YN +I+G   
Sbjct: 662 LGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCK 721

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +R L +A +VF  M K+ ++   VT+ TLI GL    R  +A +L  D+++   + P+  
Sbjct: 722 NRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVK-RKIDPNVI 780

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI      G L  A  + +EM+R  +  +   Y+SLI+     G   +   +   M
Sbjct: 781 FFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLM 840

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +GC P+ VTYN LI+GFCK +  E    +  EM  +G   +  +YN ++ G C+ GK
Sbjct: 841 VSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGK 899



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 140/299 (46%), Gaps = 9/299 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +LLH   ++ ++G     D    ++  +K      P  +++  +I    +   L  AL++
Sbjct: 146 SLLHGFCLVNRIG-----DAFSLVILMVKSGYE--PNVVVYNTLIDGLCKNGELNIALEL 198

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
            +EM    +   V  +NTLL      G+  D  + L  +M++ ++PD  ++  LI   V 
Sbjct: 199 LNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVK 258

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++A +++ EM++  + P  VT+ ++I GLC+  R+ +A K   D+M      P+  
Sbjct: 259 QGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKK-TFDLMASKGCFPNVV 317

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G C    +   + + + M  +    D   Y++LI    + G+      I   M
Sbjct: 318 TYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWM 377

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             R   P+ +T+  L+ G C   + E+A    D+M +       ++YN+++ GLCK  K
Sbjct: 378 VSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADK 436



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 124/268 (46%), Gaps = 2/268 (0%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           +R +P  + F  V+    +    +  + ++ +M +  +   +  F  L++    C +L  
Sbjct: 598 SRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSL 657

Query: 137 MKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L  ++M+    P   +   L++G     R ++A  + D M      P +V + T+I 
Sbjct: 658 ALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVIN 717

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           GLC    ++ AL++    M    ++ D   + +LI GL   G  + A  +  +MV+ KI+
Sbjct: 718 GLCKNRDLNNALEVFY-CMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKID 776

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            +   +++LI    K G   E   + KEM  R   PN  TYN+LI+GFC       A  +
Sbjct: 777 PNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYM 836

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
            D M  KGC  + ++YN ++ G CK  +
Sbjct: 837 FDLMVSKGCFPDVVTYNTLITGFCKSKR 864



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 130/293 (44%), Gaps = 38/293 (12%)

Query: 41   KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
            K  R + + Y+ +I+ L  +  + +  ++L  +    +I P  I F  +I  + +   L 
Sbjct: 738  KGIRADAVTYNTLISGLSNSGRWTDAARLLRDMV-KRKIDPNVIFFTALIDTFVKEGNLL 796

Query: 101  RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
             A  ++ EM   +V   V  +N+L+N     G L   K +F +M  K   PD  +YN LI
Sbjct: 797  EARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLI 856

Query: 160  HGCVVSRRLED-----------------------------------AWKVFDEMVKRRLQ 184
             G   S+R+ED                                   A KVF+ MV   + 
Sbjct: 857  TGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVS 916

Query: 185  PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
            P +VT+  L+  LC   ++++AL + ED+ +   +  D   +  +I+GLC   +L  A  
Sbjct: 917  PDIVTYNILLDCLCNNGKIEKALVMVEDLQKS-EMDVDIITYNIIIQGLCRTDKLKEAWC 975

Query: 245  VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
            +   + R  ++ DA  Y ++IS L + G + E   + + MKE G  P+   Y+
Sbjct: 976  LFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIYD 1028


>gi|255564599|ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537382|gb|EEF39010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 544

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 162/340 (47%), Gaps = 14/340 (4%)

Query: 7   RLACLPRLQKDPKLALQLFKNPNP-NPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDE 65
           RL  +   Q++  LALQ+F+      PN         F +N   YD II KL RA++F  
Sbjct: 63  RLVSMITRQQNLDLALQIFEYAGKYQPN---------FSHNYDTYDSIIHKLSRARVFGP 113

Query: 66  MQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125
           ++ +L  L H ++I   E IF NVI  YG A   + AL+ F  +  FNVQ +V+  NTLL
Sbjct: 114 VELLLSDL-HKSQIKCGENIFINVIRNYGLAGKPDFALRTFIRIQDFNVQRSVRSLNTLL 172

Query: 126 NPKLTCGKLDRMKELFQ-IMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
           N  +   + D +  +F+    KY V P+  + NILI        +E A KV DEM    +
Sbjct: 173 NAFVQNKRYDLVHAMFKNCRSKYGVLPNVFTCNILIKALCKKNDVESAVKVLDEMPAMGM 232

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P +VT+ T++ G      +  A K+  ++       PD   +  L+ G C  G L+ A+
Sbjct: 233 IPNVVTYTTILGGYSSRGDMVNANKVFGELFD-RGWLPDATTYTILMNGYCEQGRLADAI 291

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            + ++M  + +E +   Y  ++ A  K  +  E   +L +M ER   P+S     +I   
Sbjct: 292 KLMDDMGENGVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLERQYVPSSALCCKVIDVL 351

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C+    E A  +   M  K C  +    + ++  LCK+GK
Sbjct: 352 CEAGKIEEACELWKRMLKKNCMPDNAIMSTLIHWLCKEGK 391



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 148/318 (46%), Gaps = 38/318 (11%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNV-IGFYGRARLLERALQMFDEMSSFNVQMTVK 119
           K +D +  +    +    ++P  +  CN+ I    +   +E A+++ DEM +  +   V 
Sbjct: 179 KRYDLVHAMFKNCRSKYGVLPN-VFTCNILIKALCKKNDVESAVKVLDEMPAMGMIPNVV 237

Query: 120 FFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
            + T+L    + G +    ++F ++ ++   PDA +Y IL++G     RL DA K+ D+M
Sbjct: 238 TYTTILGGYSSRGDMVNANKVFGELFDRGWLPDATTYTILMNGYCEQGRLADAIKLMDDM 297

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM-RVY-------------------- 217
            +  ++P  VT+G ++   C E +  EA  L +D++ R Y                    
Sbjct: 298 GENGVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLERQYVPSSALCCKVIDVLCEAGKI 357

Query: 218 -------------NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
                        N  PD  + ++LI  LC  G++  A  +  E  R  I      Y++L
Sbjct: 358 EEACELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFGEFERGAIP-SLLTYNTL 416

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           I+ + + G  +E   +  +M E+G KPN+ TYN LI GF K  + +    IL+EM D  C
Sbjct: 417 IAGMCEKGELSEAGKLWDDMMEKGYKPNAFTYNMLIKGFSKIGNAKEGIRILEEMLDNRC 476

Query: 325 KANPISYNVILGGLCKDG 342
             N  +Y +++  LCK G
Sbjct: 477 MPNKSTYAILIEELCKMG 494



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           + P E+ +  ++  Y + +    A  + D+M       +      +++     GK++   
Sbjct: 302 VEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLERQYVPSSALCCKVIDVLCEAGKIEEAC 361

Query: 139 ELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           EL++ +++K   PD    + LIH      ++ +A K+F E  +R   P+L+T+ TLI G+
Sbjct: 362 ELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFGEF-ERGAIPSLLTYNTLIAGM 420

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C +  + EA KL +D+M     KP+   +  LIKG   +G     + + EEM+ ++   +
Sbjct: 421 CEKGELSEAGKLWDDMME-KGYKPNAFTYNMLIKGFSKIGNAKEGIRILEEMLDNRCMPN 479

Query: 258 AGIYSSLISALFKAGRKNEFPAIL 281
              Y+ LI  L K G + E   ++
Sbjct: 480 KSTYAILIEELCKMGMEGEVDKVV 503



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 89/192 (46%), Gaps = 2/192 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y +++    + K   E + +L  +  + + VP   + C VI     A  +E A ++
Sbjct: 305 NEVTYGVMVEAYCKEKKAGEARNLLDDM-LERQYVPSSALCCKVIDVLCEAGKIEEACEL 363

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
           +  M   N        +TL++     GK+   ++LF   E+   P   +YN LI G    
Sbjct: 364 WKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFGEFERGAIPSLLTYNTLIAGMCEK 423

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             L +A K++D+M+++  +P   T+  LI G        E +++ E+++      P+   
Sbjct: 424 GELSEAGKLWDDMMEKGYKPNAFTYNMLIKGFSKIGNAKEGIRILEEMLD-NRCMPNKST 482

Query: 226 FASLIKGLCAVG 237
           +A LI+ LC +G
Sbjct: 483 YAILIEELCKMG 494


>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 530

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 128/252 (50%), Gaps = 3/252 (1%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145
           +  +I   G+ R  + A  + D M S  V++TV  F+ L+   +  G        F  ME
Sbjct: 146 YNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLVRRYVRAGLAAEAVHAFNRME 205

Query: 146 KY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
            Y   PD  S++I+I      RR  +A   FD + K + +P ++ + +L++G C    + 
Sbjct: 206 DYGCKPDKVSFSIVISSLCKKRRASEAELFFDSL-KHKFEPDVIVYTSLVHGWCRAGDIA 264

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           +A ++  D M+   VKP+   ++ +I  LC  G+++ A  V  EM+    + +A  ++SL
Sbjct: 265 KAEEVFSD-MKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSL 323

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           +    KAGR  +   +  +MK  GC  ++++YN LI   CK+E+ + A  +LD M  KG 
Sbjct: 324 MRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGV 383

Query: 325 KANPISYNVILG 336
             N  ++N I G
Sbjct: 384 APNASTFNSIFG 395



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 144/296 (48%), Gaps = 5/296 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           + ++I+ L + +   E +     LKH  +  P  I++ +++  + RA  + +A ++F +M
Sbjct: 216 FSIVISSLCKKRRASEAELFFDSLKH--KFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDM 273

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
               V+  V  ++ +++    CG++ R  ++F ++++    P+A ++N L+   V + R 
Sbjct: 274 KEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRT 333

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E   +V+++M +       +++  LI   C +  +DEA+K+  D M    V P+   F S
Sbjct: 334 EKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVL-DTMVKKGVAPNASTFNS 392

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +   +  + +++ A  +  +M   K   +   Y+ L+     +   +    + KEM E  
Sbjct: 393 IFGCIAELHDVNGAHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESE 452

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC-KANPISYNVILGGLCKDGK 343
            +PN  TY  LI  FC++  +  A+ ++ EM ++ C K N   Y  +L  L   G+
Sbjct: 453 VEPNVNTYRILILMFCEKGHWNNAYNLMKEMVEEKCLKPNLSIYETVLELLRNAGQ 508



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 133/306 (43%), Gaps = 16/306 (5%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R  +  + +++ +  RA +  E     ++++ D    P ++ F  VI    + R    A 
Sbjct: 175 RITVSTFSVLVRRYVRAGLAAEAVHAFNRME-DYGCKPDKVSFSIVISSLCKKRRASEAE 233

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGC 162
             FD +     +  V  + +L++     G + + +E+F  M E  V P+  +Y+I+I   
Sbjct: 234 LFFDSLKH-KFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSL 292

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN---- 218
               ++  A  VF EM+     P  VTF +L       +RV       E +++VYN    
Sbjct: 293 CRCGQITRAHDVFSEMIDAGCDPNAVTFNSL-------MRVHVKAGRTEKVLQVYNQMKR 345

Query: 219 --VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
                D   +  LI+  C    L  A+ V + MV+  +  +A  ++S+   + +    N 
Sbjct: 346 LGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNG 405

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +  +MKE  C PN++TYN L+  F   +  +    +  EM +   + N  +Y +++ 
Sbjct: 406 AHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILIL 465

Query: 337 GLCKDG 342
             C+ G
Sbjct: 466 MFCEKG 471



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 2/189 (1%)

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YN +I      R  + AW + D M  R ++ T+ TF  L+          EA+    + M
Sbjct: 146 YNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLVRRYVRAGLAAEAVH-AFNRM 204

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
             Y  KPD   F+ +I  LC     S A  +  + ++ K E D  +Y+SL+    +AG  
Sbjct: 205 EDYGCKPDKVSFSIVISSLCKKRRASEA-ELFFDSLKHKFEPDVIVYTSLVHGWCRAGDI 263

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            +   +  +MKE G KPN  TY+ +I   C+      A  +  EM D GC  N +++N +
Sbjct: 264 AKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSL 323

Query: 335 LGGLCKDGK 343
           +    K G+
Sbjct: 324 MRVHVKAGR 332



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 117/246 (47%), Gaps = 6/246 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y ++I  L R         +  ++  D    P  + F +++  + +A   E+ LQ+
Sbjct: 281 NVYTYSIVIDSLCRCGQITRAHDVFSEMI-DAGCDPNAVTFNSLMRVHVKAGRTEKVLQV 339

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVV 164
           +++M           +N L+        LD  +K L  +++K V+P+A ++N  I GC+ 
Sbjct: 340 YNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNS-IFGCIA 398

Query: 165 S-RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
               +  A +++ +M + +  P  +T+  L+        +D  LKLK++ M    V+P+ 
Sbjct: 399 ELHDVNGAHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKE-MDESEVEPNV 457

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDK-IEMDAGIYSSLISALFKAGRKNEFPAILK 282
             +  LI   C  G  + A  + +EMV +K ++ +  IY +++  L  AG+  +   +++
Sbjct: 458 NTYRILILMFCEKGHWNNAYNLMKEMVEEKCLKPNLSIYETVLELLRNAGQLKKHEELVE 517

Query: 283 EMKERG 288
           +M  RG
Sbjct: 518 KMVARG 523


>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 743

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 148/295 (50%), Gaps = 2/295 (0%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ I+  + +     +++ +L  +K +  +VP  + + N++  Y +   L+ A Q+ + M
Sbjct: 243 YNTILKAMSKKGRLSDVKDLLLDMKRNG-LVPNRVTYNNLVYGYCKLGSLKEAFQIVELM 301

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
              N+   +  +N L+N     G +    EL  +M+   + PD  +YN LI GC      
Sbjct: 302 KQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLS 361

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A K+ ++M    ++P  VT    +  LC E + +E  +  ++++ ++   PD   + +
Sbjct: 362 LEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHT 421

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LIK    VG+LS AL +  EM +  I+M+    ++++ AL K  + +E   +L    +RG
Sbjct: 422 LIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRG 481

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              + VTY  LI G+ +EE  E AF + DEM          ++N ++GGLC  GK
Sbjct: 482 YIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGK 536



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 138/302 (45%), Gaps = 43/302 (14%)

Query: 84  IIFCN--VIGF--YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           ++ CN  +IG   Y  +  +  A ++FD+M    V + VK FN L+N     GKL+    
Sbjct: 166 LLTCNTLLIGLVRYPSSFSIASAREVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALG 225

Query: 140 LFQIM--EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           + + M  E  V+PD  +YN ++       RL D   +  +M +  L P  VT+  L+YG 
Sbjct: 226 MLERMVSEFNVNPDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGY 285

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C    + EA ++ E +M+  N+ PD   +  LI G+C  G +   L + + M   K++ D
Sbjct: 286 CKLGSLKEAFQIVE-LMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPD 344

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE---------- 307
              Y++LI   F+ G   E   ++++M+  G KPN VT+N  +   CKEE          
Sbjct: 345 VVTYNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVK 404

Query: 308 --------------------------DFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
                                     D   A  ++ EMG KG K N I+ N IL  LCK+
Sbjct: 405 ELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKE 464

Query: 342 GK 343
            K
Sbjct: 465 RK 466



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 149/304 (49%), Gaps = 13/304 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + +++ +  L + +  +E+ + + +L       P  + +  +I  Y +   L  AL+M
Sbjct: 379 NQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALEM 438

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYNILIHGCV 163
             EM    ++M     NT+L+      K+D    L     K  Y+  D  +Y  LI G  
Sbjct: 439 MREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIV-DEVTYGTLIMGYF 497

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              ++E A++++DEM + ++ PT+ TF +LI GLC   + + A++ K D +    + PD 
Sbjct: 498 REEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGKTELAME-KFDELAESGLLPDD 556

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK----NEFPA 279
             F S+I G C  G +  A     E ++   + D    + L++ L K G      N F  
Sbjct: 557 CTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNT 616

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           ++ E +      ++VTYN +IS FCK++  + A+ +L EM +K  + +  +YN I+  L 
Sbjct: 617 LITERE-----VDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKRLEPDRFTYNSIITSLM 671

Query: 340 KDGK 343
           +DGK
Sbjct: 672 EDGK 675



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 107/197 (54%), Gaps = 5/197 (2%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC---LELRVDEA 206
           P    ++I +   + + +   A +VF +M++ +L+P L+T  TL+ GL        +  A
Sbjct: 129 PSKALFDIALSAYLHAGKPHVALQVFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSIASA 188

Query: 207 LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD-KIEMDAGIYSSLI 265
            ++ +D++++  V  D + F  L+ G C  G+L  ALG+ E MV +  +  D   Y++++
Sbjct: 189 REVFDDMVKI-GVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYNTIL 247

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
            A+ K GR ++   +L +MK  G  PN VTYN L+ G+CK    + AF I++ M      
Sbjct: 248 KAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNIL 307

Query: 326 ANPISYNVILGGLCKDG 342
            +  +YN+++ G+C  G
Sbjct: 308 PDLCTYNILINGVCNAG 324



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 150/349 (42%), Gaps = 48/349 (13%)

Query: 34  DTEAHPLKPFR--YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIG 91
           D + + L P R  YN L Y     KLG  K   E  QI+  +K  T I+P    +  +I 
Sbjct: 265 DMKRNGLVPNRVTYNNLVYGYC--KLGSLK---EAFQIVELMKQ-TNILPDLCTYNILIN 318

Query: 92  FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME------ 145
               A  +   L++ D M S  +Q  V  +NTL++     G     K+L + ME      
Sbjct: 319 GVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLSLEAKKLMEQMENDGVKP 378

Query: 146 ---------KYV----------------------SPDACSYNILIHGCVVSRRLEDAWKV 174
                    K++                      SPD  +Y+ LI   +    L  A ++
Sbjct: 379 NQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALEM 438

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM-RVYNVKPDGQVFASLIKGL 233
             EM ++ ++   +T  T++  LC E +VDEA  L +    R Y V  D   + +LI G 
Sbjct: 439 MREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIV--DEVTYGTLIMGY 496

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
               ++  A  + +EM R KI      ++SLI  L   G+         E+ E G  P+ 
Sbjct: 497 FREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDD 556

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            T+N++I G+CKE   E AF   +E      K +  + N++L GLCK+G
Sbjct: 557 CTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEG 605



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 127/282 (45%), Gaps = 37/282 (13%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + N +  + I+  L + +  DE   +L    H    +  E+ +  +I  Y R   +E
Sbjct: 445 KGIKMNTITLNTILDALCKERKVDEAHNLLDS-AHKRGYIVDEVTYGTLIMGYFREEKVE 503

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIH 160
           +A +M+DEM                          R+K         ++P   ++N LI 
Sbjct: 504 KAFEMWDEMK-------------------------RIK---------ITPTVTTFNSLIG 529

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     + E A + FDE+ +  L P   TF ++I G C E RV++A +   + ++ ++ K
Sbjct: 530 GLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRVEKAFEFYNESIK-HSFK 588

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD      L+ GLC  G    AL     ++ ++ E+D   Y+++ISA  K  +  E   +
Sbjct: 589 PDNYTCNILLNGLCKEGMTEKALNFFNTLITER-EVDTVTYNTMISAFCKDKKLKEAYDL 647

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           L EM+E+  +P+  TYN++I+   ++     A  +L +   K
Sbjct: 648 LSEMEEKRLEPDRFTYNSIITSLMEDGKLSEADELLKKFSGK 689



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 111/222 (50%), Gaps = 4/222 (1%)

Query: 120 FFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV---VSRRLEDAWKVF 175
            F+  L+  L  GK     ++FQ M +  + P+  + N L+ G V    S  +  A +VF
Sbjct: 133 LFDIALSAYLHAGKPHVALQVFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSIASAREVF 192

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           D+MVK  +   + TF  L+ G CLE ++++AL + E ++  +NV PD   + +++K +  
Sbjct: 193 DDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYNTILKAMSK 252

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G LS    +  +M R+ +  +   Y++L+    K G   E   I++ MK+    P+  T
Sbjct: 253 KGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNILPDLCT 312

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           YN LI+G C          ++D M     + + ++YN ++ G
Sbjct: 313 YNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDG 354



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 104/222 (46%), Gaps = 22/222 (9%)

Query: 55  TKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNV 114
           T+L   K FDE+ +        + ++P +  F ++I  Y +   +E+A + ++E    + 
Sbjct: 537 TELAMEK-FDELAE--------SGLLPDDCTFNSIILGYCKEGRVEKAFEFYNESIKHSF 587

Query: 115 QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKV 174
           +      N LLN     G  ++    F  +      D  +YN +I      ++L++A+ +
Sbjct: 588 KPDNYTCNILLNGLCKEGMTEKALNFFNTLITEREVDTVTYNTMISAFCKDKKLKEAYDL 647

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
             EM ++RL+P   T+ ++I  L  + ++ EA    +++++ ++ K     F S+ + L 
Sbjct: 648 LSEMEEKRLEPDRFTYNSIITSLMEDGKLSEA----DELLKKFSGK-----FGSMKRNLH 698

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
              E + A    +E    +++ +A  YS +I+ L   GR  E
Sbjct: 699 LETEKNPATSESKE----ELKTEAIAYSDVINELCSRGRLKE 736


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 149/299 (49%), Gaps = 6/299 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL  Y  ++   G A   DE   I  Q+     + P  + +  +I  +G+   LERA   
Sbjct: 169 NLFTYHSVMHAFGSAGRVDEACDIFQQMVQKG-LQPDAVTYNILIDAFGKTGQLERAFDF 227

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             +  SF  ++T   +N+LL+     G +  + ELF Q+  K +  +  +Y ILI     
Sbjct: 228 VGKSRSFTNEVT---YNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGW 284

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R+ED W+++ EMV   ++  +VT   ++  L    RV+ A +L +D M+   +  D  
Sbjct: 285 AGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQD-MKFKGLNADTV 343

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LI GL   G+L  A  +  EM  +    +   Y++LIS+  K    +    +  EM
Sbjct: 344 TYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEM 403

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           KERG  PN V+Y++LI GF K    +AA ++  EM  +GC  N ++YN+++  L + G+
Sbjct: 404 KERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGR 462



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 148/294 (50%), Gaps = 8/294 (2%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           ++T LG A+ +D++Q+++  ++ D   +  ++ F  +I  YG A ++E+ALQ     +  
Sbjct: 1   MLTLLGAARRYDDVQRLVESMQKDRTKLDTQL-FNTLIHIYGEANMMEKALQTLAAFTKE 59

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDA 171
             + T   +++++   +  G +     ++ Q+++    PD  ++NILI     + ++E+A
Sbjct: 60  GGRPTAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEA 119

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIK 231
             VF +M K  + P + T+  LI  L    R+D  +KL E  M     +P+   + S++ 
Sbjct: 120 CNVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFES-MTAQGCQPNLFTYHSVMH 178

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR-KNEFPAILKEMKERGCK 290
              + G +  A  + ++MV+  ++ DA  Y+ LI A  K G+ +  F  + K        
Sbjct: 179 AFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDFVGKSR----SF 234

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
            N VTYN+L+S   ++ D +    +  +M  KG  +N ++Y +++  L   G+ 
Sbjct: 235 TNEVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRV 288


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 160/347 (46%), Gaps = 51/347 (14%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI------GF 92
           PL   + N   Y ++I  L  AK   E   +   +K D    P    F  +I      G 
Sbjct: 245 PLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDG-CSPNVRAFTFLISGLCKSGR 303

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPD 151
            G ARLL      FD M    V  +V  +N ++      G+++   ++ ++MEK    PD
Sbjct: 304 VGDARLL------FDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPD 357

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +YN LI+G +  ++ E+A ++ +  VK    PT+VTF  LI G C+  + D+AL++K 
Sbjct: 358 DWTYNTLIYG-LCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKN 416

Query: 212 DIMRVYNVKPDGQVFA-----------------------------------SLIKGLCAV 236
            +M     K D QVF                                    S+I G C  
Sbjct: 417 KMMSS-KCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKS 475

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           G++ +AL V + M RD  + +A  Y+SL+  L K  + ++  A+L +M++ G  PN +TY
Sbjct: 476 GKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITY 535

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             L+ G C E DF+ AF + + M   G K +  +Y V+   LCK G+
Sbjct: 536 TTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGR 582



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 155/342 (45%), Gaps = 48/342 (14%)

Query: 38  HPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           HP   + YN L Y L   K       +E +++L+    +    P  + F N+I  Y  A 
Sbjct: 355 HP-DDWTYNTLIYGLCDQKT------EEAEELLNNAVKEG-FTPTVVTFTNLINGYCMAE 406

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT--------------------------- 130
             + AL+M ++M S   ++ ++ F  L+N  +                            
Sbjct: 407 KFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYT 466

Query: 131 --------CGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
                    GK+D   E+ ++ME+    P+A +YN L++G V  ++L  A  +  +M K 
Sbjct: 467 SIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKD 526

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
            + P ++T+ TL+ G C E   D A +L E +M    +KPD   +A L   LC  G    
Sbjct: 527 GIIPNVITYTTLLQGQCDEHDFDNAFRLFE-MMEQNGLKPDEHAYAVLTDALCKAGRAEE 585

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           A      +VR  + +    Y++LI    KAG  +    +++ M + GC P+S TY+ L+ 
Sbjct: 586 AYSF---IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLH 642

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             CK++    A  ILD+M  +G K    +Y +++  + ++GK
Sbjct: 643 ALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGK 684



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 136/312 (43%), Gaps = 19/312 (6%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           ++Y  +I    +A   D    ++ ++  D    P    +  ++    + + L  AL + D
Sbjct: 600 VYYTTLIDGFSKAGNTDFAATLIERMI-DEGCTPDSYTYSVLLHALCKQKRLNEALPILD 658

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSR 166
           +MS   ++ T+  +  L++  L  GK D  K ++  M      P A +Y + I+      
Sbjct: 659 QMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEG 718

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           RLEDA  +  +M +  + P +VT+  LI G      +D A    + ++   + +P+   +
Sbjct: 719 RLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGA-SCEPNYWTY 777

Query: 227 ASLIK----------------GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
             L+K                G+  + EL +   + E MV+  +      YSSLI+   K
Sbjct: 778 CLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCK 837

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
           AGR  E   +L  M  +G  PN   Y  LI   C  + FE A + +  M + G +    S
Sbjct: 838 AGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLES 897

Query: 331 YNVILGGLCKDG 342
           Y +++ GLC +G
Sbjct: 898 YRLLVVGLCNEG 909



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 118/260 (45%), Gaps = 18/260 (6%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
           + A +M++EM+S   + +   +   +N     G+L+  ++L   ME+  V+PD  +YNIL
Sbjct: 686 DHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNIL 745

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF---------GTLIY-------GLCLELR 202
           I GC     ++ A+     MV    +P   T+         G L Y       G+   + 
Sbjct: 746 IDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIE 805

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
           +D   +L E +++ + + P    ++SLI G C  G L  A  + + M    +  +  IY+
Sbjct: 806 LDITWQLLERMVK-HGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYT 864

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
            LI          +  + +  M E G +P   +Y  L+ G C E DFE   ++  ++ + 
Sbjct: 865 LLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLEL 924

Query: 323 GCKANPISYNVILGGLCKDG 342
           G   + +++ ++  GL K G
Sbjct: 925 GYNHDEVAWKILNDGLLKAG 944



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 135/323 (41%), Gaps = 18/323 (5%)

Query: 32  PNDTEAHPLKPFRYN---------LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK 82
           P+ T AH    FR           L  ++ +  + G     D    +LH L         
Sbjct: 50  PSVTAAHVADLFRAESTAPEPATALAFFEWLARRDGFRHTADSHAALLHLLSRRRAPAQY 109

Query: 83  EIIFCNVIGFYGRA---RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           E +  +++     A   R+   A+Q      S  + ++ K +N  L         + M  
Sbjct: 110 ERLVVSMLNCSDTAEDMRVSADAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGR 169

Query: 140 LF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           ++ Q+++  + PD  +YN +I        L  A + F  +++  L+P   T   L+ G C
Sbjct: 170 VYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYC 229

Query: 199 L--ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
              ELR    L L   +M +   + +   +  LI+GLC    +  AL +   M RD    
Sbjct: 230 RTGELRKACWLFL---MMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSP 286

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +   ++ LIS L K+GR  +   +   M + G  P+ +TYNA+I G+ K      A  I 
Sbjct: 287 NVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIK 346

Query: 317 DEMGDKGCKANPISYNVILGGLC 339
           + M   GC  +  +YN ++ GLC
Sbjct: 347 ELMEKNGCHPDDWTYNTLIYGLC 369



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 1/171 (0%)

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
           +V+ ++V+  L P  VT+ T+I   C E  +  A +    ++    ++P+     +L+ G
Sbjct: 169 RVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEG-GLEPETFTCNALVLG 227

Query: 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
            C  GEL  A  +   M     + +   Y+ LI  L +A    E   +   MK  GC PN
Sbjct: 228 YCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPN 287

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              +  LISG CK      A  + D M   G   + ++YN ++ G  K G+
Sbjct: 288 VRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGR 338



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 1/100 (1%)

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           V  ++V+D +  D   Y+++I +  K G         + + E G +P + T NAL+ G+C
Sbjct: 170 VYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYC 229

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
           +  +   A  +   M   GC+ N  SY +++ GLC + KC
Sbjct: 230 RTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLC-EAKC 268



 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 13/136 (9%)

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           +L   ++   +   D +V A  I+ +   G   LAL  K              Y+  + +
Sbjct: 111 RLVVSMLNCSDTAEDMRVSADAIQAIRRTGSARLALSPK-------------CYNFALRS 157

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L +         +  ++ + G  P++VTYN +I  +CKE D   A      + + G +  
Sbjct: 158 LARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPE 217

Query: 328 PISYNVILGGLCKDGK 343
             + N ++ G C+ G+
Sbjct: 218 TFTCNALVLGYCRTGE 233


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 159/306 (51%), Gaps = 5/306 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + F +N+ +Y++++  L R   F +   +L +++ ++ ++P  + +  VI  +   + LE
Sbjct: 136 RGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNS-LMPDVVSYNTVIRGFCEGKELE 194

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
           +ALQ+ +EM       ++  +  L++     GK+D    L + M+ K +  D   Y  LI
Sbjct: 195 KALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLI 254

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G      L+    +FDE+++R   P  +T+ TLI G C   R+ EA ++ E +M    V
Sbjct: 255 RGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMME-RGV 313

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +P+   +  LI GLC VG+   AL +   M++   E +   Y+ +I+ L K     +   
Sbjct: 314 RPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALE 373

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP--ISYNVILGG 337
           I++ MK+R  +P+++TYN+L+ G C + D + A  +L  M       +P  IS+N ++ G
Sbjct: 374 IVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHG 433

Query: 338 LCKDGK 343
           LCK  +
Sbjct: 434 LCKGNR 439



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 151/336 (44%), Gaps = 40/336 (11%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           ++L+ + ++I    +A   DE   +L ++KH   +    I++ ++I  +     L+R   
Sbjct: 210 WSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKG-LEADLIVYTSLIRGFCDCGELDRGKA 268

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCV 163
           +FDE+           +NTL+      G+L    E+F+ +ME+ V P+  +Y  LI G  
Sbjct: 269 LFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLC 328

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              + ++A ++ + M+++  +P +VT+  +I  LC +  V +AL++ E +M+    +PD 
Sbjct: 329 GVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVE-LMKKRRTRPDN 387

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS--------------------- 262
             + SL+ GLCA G+L  A  +   M++D    D  + S                     
Sbjct: 388 ITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIY 447

Query: 263 ----------------SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
                            L+++  K+G  N+   + K++      PNS TY  +I GFCK 
Sbjct: 448 DLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKT 507

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
                A  +L +M       +   YN +L  LCK G
Sbjct: 508 GMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKG 543



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 1/190 (0%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           S + L+   V  R+   A  V   M+KR     +  +  L+ GLC  L   +A+ L  + 
Sbjct: 109 SLSGLLECFVQMRKTGFAHGVLALMLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLRE- 167

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           MR  ++ PD   + ++I+G C   EL  AL +  EM           +  LI A  KAG+
Sbjct: 168 MRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGK 227

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +E   +LKEMK +G + + + Y +LI GFC   + +    + DE+ ++G     I+YN 
Sbjct: 228 MDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNT 287

Query: 334 ILGGLCKDGK 343
           ++ G CK G+
Sbjct: 288 LIRGFCKLGR 297



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 131/322 (40%), Gaps = 42/322 (13%)

Query: 41  KPFRYNLLHYDLIITKL-GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           +  R N+  Y  +I  L G  K  + +Q +   L+ D    P  + +  +I    +  L+
Sbjct: 311 RGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEE--PNVVTYNIIINKLCKDSLV 368

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK---YVSPDACSYN 156
             AL++ + M     +     +N+LL      G LD   +L  +M K   Y  PD  S+N
Sbjct: 369 ADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFN 428

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            LIHG     RL  A  ++D +V++     +VT   L+        V++A++L + I   
Sbjct: 429 ALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISN- 487

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVK------------------------------ 246
             + P+   + ++I G C  G L++A G+                               
Sbjct: 488 SKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQ 547

Query: 247 -----EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
                EEM RD    D   ++ +I    KAG      ++L  M   G  P+  TY+ LI+
Sbjct: 548 AWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLIN 607

Query: 302 GFCKEEDFEAAFTILDEMGDKG 323
            F K    + A +  D+M D G
Sbjct: 608 RFLKLGYLDEAISFFDKMIDSG 629


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 131/264 (49%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  +I    +     +A++ FD+  +   Q TV  + T++N     G+      L
Sbjct: 163 PDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGL 222

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ ME+    P+  +YNILI      + + +A  +F  M  +R+ P + T+ +LI GLC 
Sbjct: 223 FKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCN 282

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R  EA  L  + M   N+ P+   F  L+  +C  G++S A GV + M    +E D  
Sbjct: 283 FRRWKEASALLNE-MTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVV 341

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YSSL+          E   +   M  +GCKP++ +YN LI G+CK +  + A  + +EM
Sbjct: 342 TYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEM 401

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             +G   + ++YN ++ GLC+ G+
Sbjct: 402 IHQGLTPDNVNYNTLIHGLCQLGR 425



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 149/329 (45%), Gaps = 38/329 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+++I  L + K+ +E   I   +K   RI P    + ++I      R  + A  +
Sbjct: 234 NVVTYNILIDSLCKDKLVNEALDIFSYMKA-KRISPDIFTYNSLIQGLCNFRRWKEASAL 292

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-------------------- 145
            +EM+S N+   +  FN L++     GK+   + +F+ M                     
Sbjct: 293 LNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSL 352

Query: 146 ----------------KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
                           K   PDA SYNILI G   ++R+++A ++F+EM+ + L P  V 
Sbjct: 353 RMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVN 412

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           + TLI+GLC   R+ EA  L +++    N+ PD   ++ L+ G C  G L  A  +   M
Sbjct: 413 YNTLIHGLCQLGRLREAQDLFKNMHSNGNL-PDLFTYSMLLDGFCKEGYLGKAFRLFRVM 471

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
               ++ D  +Y+ LI A+ K G   +   +  E+  +G  PN   Y  +I+  CKE   
Sbjct: 472 QSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLL 531

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGL 338
           + A      M   GC  +  SYNVI+ G 
Sbjct: 532 DEALEAFRNMEGDGCPPDEFSYNVIIRGF 560



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 121/253 (47%), Gaps = 2/253 (0%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY- 147
           +I  +   + ++ A  +F +M    +Q     FNTL+N     GK  +  E F   E   
Sbjct: 136 LIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASG 195

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
             P   +Y  +I+G         A  +F +M +   QP +VT+  LI  LC +  V+EAL
Sbjct: 196 CQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEAL 255

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            +    M+   + PD   + SLI+GLC       A  +  EM    I  +   ++ L+ A
Sbjct: 256 DIFS-YMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDA 314

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           + K G+ +E   + K M E G +P+ VTY++L+ G+    +   A  + D M  KGCK +
Sbjct: 315 ICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPD 374

Query: 328 PISYNVILGGLCK 340
             SYN+++ G CK
Sbjct: 375 AFSYNILIKGYCK 387



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 1/196 (0%)

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           +SPD  + +ILI      +R++ A+ VF +M+K  LQP  VTF TLI GLC   +  +A+
Sbjct: 126 LSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAV 185

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           +  +D       +P    + ++I GLC +GE + A G+ ++M     + +   Y+ LI +
Sbjct: 186 EFFDDF-EASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDS 244

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L K    NE   I   MK +   P+  TYN+LI G C    ++ A  +L+EM       N
Sbjct: 245 LCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPN 304

Query: 328 PISYNVILGGLCKDGK 343
             ++NV++  +CK+GK
Sbjct: 305 IFTFNVLVDAICKEGK 320



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 144/321 (44%), Gaps = 26/321 (8%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKL-------GRAKMFDEMQQILHQLKHDTRIVPKEII 85
           +D EA   +P  Y    Y  II  L         A +F +M++   Q        P  + 
Sbjct: 189 DDFEASGCQPTVYT---YTTIINGLCKIGETTAAAGLFKKMEEAGCQ--------PNVVT 237

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145
           +  +I    + +L+  AL +F  M +  +   +  +N+L+     C    R KE   ++ 
Sbjct: 238 YNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQG--LC-NFRRWKEASALLN 294

Query: 146 KYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
           +  S    P+  ++N+L+       ++ +A  VF  M +  ++P +VT+ +L+YG  L +
Sbjct: 295 EMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRM 354

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
            + EA KL  D M     KPD   +  LIKG C    +  A  +  EM+   +  D   Y
Sbjct: 355 EIVEARKLF-DAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNY 413

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           ++LI  L + GR  E   + K M   G  P+  TY+ L+ GFCKE     AF +   M  
Sbjct: 414 NTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQS 473

Query: 322 KGCKANPISYNVILGGLCKDG 342
              K +   YN+++  +CK G
Sbjct: 474 TYLKPDIAMYNILIDAMCKFG 494



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 88/176 (50%)

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
           R ++DA   F+ M+ R   P ++ F  L+  +    +   A+      M +  + PD   
Sbjct: 73  RNIDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYT 132

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
            + LI     +  + LA  V  +M++  ++ DA  +++LI+ L K G+  +      + +
Sbjct: 133 LSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFE 192

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             GC+P   TY  +I+G CK  +  AA  +  +M + GC+ N ++YN+++  LCKD
Sbjct: 193 ASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKD 248


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 143/293 (48%), Gaps = 3/293 (1%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS 110
           + ++  L +  M  E   ++  + H   + P  + +  ++  +     ++ A+++FD M 
Sbjct: 284 NTVVDALCKEGMVAEAHDVVDMMIHRG-VEPNVVTYNALMDGHCLRNEVDVAVKVFDTMV 342

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLE 169
             +    V  +NTL+N       +D+   LF+ M +  ++P+  +YN LIHG     RL+
Sbjct: 343 HKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQ 402

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           DA  +F EMV R   P LVT+ TL   LC    +D+A+ L + I    N  PD Q++ ++
Sbjct: 403 DAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAI-EGSNWDPDIQIYTTI 461

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           + G+C  GEL  A  +   +    ++ +   Y+ +I  L K G   E   +  EM + GC
Sbjct: 462 LDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGC 521

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            PN  TYN +  GF +  +      +L+EM  +G   +  +  +++G L  DG
Sbjct: 522 SPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG 574



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 129/295 (43%), Gaps = 35/295 (11%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMKE 139
           P  + F  ++    + +     L +  +M SF +   V     ++N      ++D     
Sbjct: 68  PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSA 127

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L +I++    PDA ++  LI G  V  ++ +A  +FD+M+    QP +VT+GTLI GLC 
Sbjct: 128 LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 187

Query: 200 ELRVDEALKL-------------------------KEDIMRVYNV---------KPDGQV 225
                 A++L                            +   +N+          P+   
Sbjct: 188 VGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVT 247

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + SLI GLC + E      +  EMV  KI  D    ++++ AL K G   E   ++  M 
Sbjct: 248 YNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMI 307

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            RG +PN VTYNAL+ G C   + + A  + D M  K C AN ISYN ++ G CK
Sbjct: 308 HRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCK 362



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 146/299 (48%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ +I  L +   +  +  +++++  D++I+P       V+    +  ++  A  +
Sbjct: 244 NIVTYNSLIHGLCKLCEWKHVTTLMNEMV-DSKIMPDVFTLNTVVDALCKEGMVAEAHDV 302

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            D M    V+  V  +N L++      ++D   ++F  M  K    +  SYN LI+G   
Sbjct: 303 VDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCK 362

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            + ++ A  +F+EM ++ L P  VT+ TLI+GLC   R+ +A+ L  +++    + PD  
Sbjct: 363 IQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQI-PDLV 421

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +L   LC    L  A+ + + +     + D  IY++++  + +AG   +   +   +
Sbjct: 422 TYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNL 481

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G +PN  TYN +I G CK+     A  +  EM   GC  N  +YN+I  G  ++ +
Sbjct: 482 SSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNE 540



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 123/245 (50%), Gaps = 2/245 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           L+ AL  F+ M       +   FN LL           +  L + M+ + + PD  +  I
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I+      R++ A+    +++K   QP   TF TLI GLC+E ++ EAL L  D M   
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLF-DKMIGE 169

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             +P+   + +LI GLC VG  S A+ +   M +   + +  ++S+LI +L K  +  E 
Sbjct: 170 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEA 229

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             I  EM  +G  PN VTYN+LI G CK  +++   T+++EM D     +  + N ++  
Sbjct: 230 FNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDA 289

Query: 338 LCKDG 342
           LCK+G
Sbjct: 290 LCKEG 294



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 107/220 (48%), Gaps = 2/220 (0%)

Query: 122 NTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           NT  +  L    LD     F +++ K   P    +N L+     ++       +  +M  
Sbjct: 39  NTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDS 98

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
             + P + T   +I  LC   RVD A      I+++ + +PD   F +LI+GLC  G++ 
Sbjct: 99  FGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGH-QPDATTFTTLIRGLCVEGKIG 157

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            AL + ++M+ +  + +   Y +LI+ L K G  +    +L+ M++  C+PN V ++ LI
Sbjct: 158 EALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLI 217

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
              CK+     AF I  EM  KG   N ++YN ++ GLCK
Sbjct: 218 DSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCK 257


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 142/264 (53%), Gaps = 6/264 (2%)

Query: 85  IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM 144
           ++  VI  + +A  +++A ++ DEM    V+M V   +TL+      G++D   E F+ M
Sbjct: 1   MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM 60

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR-----LQPTLVTFGTLIYGLCL 199
            +  SP+  +YN +++G   + R+++  ++FD+M KR       +P ++++ T+I  LC 
Sbjct: 61  GEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCK 120

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             RVD+A +  +  MR     P+   ++SLI GLC V  +  A  +  ++  + +   A 
Sbjct: 121 AQRVDKAYEYFKR-MRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAM 179

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+++++   + G+ +E   +L  MKE+G   N + +NA++    K ++ E A    + +
Sbjct: 180 YYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERL 239

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
              G K N ++YNV + GLCK GK
Sbjct: 240 LKSGKKPNVVTYNVAVHGLCKAGK 263



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 148/298 (49%), Gaps = 25/298 (8%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y++ +  L +A   DE  +IL ++  ++++ P  I + ++I  + +A  +++A  +
Sbjct: 247 NVVTYNVAVHGLCKAGKVDEAYRILLEMV-ESKVTPDVITYSSIIDGFCKAGRMDKADDV 305

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHG 161
           F  M           F TLL+      +  + +E F++ E  V+    P   +YN+L+  
Sbjct: 306 FTRMMVHECIPHPVTFMTLLH---GFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDC 362

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              +  +E A +++ +M +++ QP   T+  LI  LC   RVDEA +   D+M   NV P
Sbjct: 363 VCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFL-DVMEADNVVP 421

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +G +  +L++ LC  GE+  A  V + +V                 + KAG  +E   ++
Sbjct: 422 NGAICHALVEVLCKQGEVDEACSVLDNVVE----------------ICKAGEPDEAVEVI 465

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           ++M  +G +P+  TY A++   C  +  ++A    ++M  +GC    ++Y +++G  C
Sbjct: 466 EQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGEAC 523



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 151/349 (43%), Gaps = 57/349 (16%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L +    DE   +L QLK +  +VP+ + +  V+  + R       L++
Sbjct: 142 NVVTYSSLIDGLCKVDRVDEAYSLLMQLKGED-MVPRAMYYNAVVNGFKRQGKPSECLEL 200

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
              M      + +  FN +L+      + ++  + F+ +++    P+  +YN+ +HG   
Sbjct: 201 LLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCK 260

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD-------------------- 204
           + ++++A+++  EMV+ ++ P ++T+ ++I G C   R+D                    
Sbjct: 261 AGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVT 320

Query: 205 ---------------EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
                          EA ++ ED++    + P  Q +  L+  +C    +  AL +  +M
Sbjct: 321 FMTLLHGFSEHKKSREAFRVHEDMVNAGFI-PGLQTYNVLMDCVCGADSVESALEIYHKM 379

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
            R K + DA  Y+ LI  L +A R +E    L  M+     PN    +AL+   CK+ + 
Sbjct: 380 KRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEV 439

Query: 310 EAAFTILD-------------------EMGDKGCKANPISYNVILGGLC 339
           + A ++LD                   +M  KG + +  +Y  +L  LC
Sbjct: 440 DEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLC 488



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 46  NLLHYDLIITKLGRA-------KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           N++ Y+ ++  L +A       ++FD+M++  ++  H     P  I +  VI    +A+ 
Sbjct: 67  NVITYNTVVNGLCKANRIDEGLELFDDMEK-RYEASHGCE--PDVISYSTVIDALCKAQR 123

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE----LFQIMEKYVSPDACS 154
           +++A + F  M +      V  +++L++      K+DR+ E    L Q+  + + P A  
Sbjct: 124 VDKAYEYFKRMRAVGCAPNVVTYSSLIDGLC---KVDRVDEAYSLLMQLKGEDMVPRAMY 180

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YN +++G     +  +  ++   M ++     ++ F  +++ L      ++A +  E ++
Sbjct: 181 YNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLL 240

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           +    KP+   +   + GLC  G++  A  +  EMV  K+  D   YSS+I    KAGR 
Sbjct: 241 K-SGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRM 299

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           ++   +   M    C P+ VT+  L+ GF + +    AF + ++M + G      +YNV+
Sbjct: 300 DKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVL 359

Query: 335 LGGLC 339
           +  +C
Sbjct: 360 MDCVC 364


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 132/254 (51%), Gaps = 3/254 (1%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VS 149
           GF    R  E A  +F EM       ++  F  LL       + + +    Q ME Y +S
Sbjct: 45  GFLHSIRF-EDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGIS 103

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
            D  S+ ILIH      RL  A  V  +M+K   +P++VTFG+L++G CL  R+ +A  L
Sbjct: 104 HDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSL 163

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
              +M     +P+  V+ +LI GLC  GEL++AL +  EM +  +  D   Y++L++ L 
Sbjct: 164 V-ILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLC 222

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
            +GR ++   +L++M +R   P+ VT+ ALI  F K+ + + A  +  EM       N +
Sbjct: 223 YSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNV 282

Query: 330 SYNVILGGLCKDGK 343
           +YN I+ GLC  G+
Sbjct: 283 TYNSIINGLCMHGR 296



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 145/318 (45%), Gaps = 16/318 (5%)

Query: 27  NPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF 86
           +  P P+  +   L     NL  Y+ +I        +   +  L+ + HD         F
Sbjct: 64  HSQPLPSIVDFTRLLTATANLRRYETVI--------YFSQKMELYGISHDL------YSF 109

Query: 87  CNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK 146
             +I  + R   L  AL +  +M     + ++  F +LL+      ++     L  +M K
Sbjct: 110 TILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVK 169

Query: 147 Y-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
               P+   YN LI G   +  L  A ++ +EM K+ L   +VT+ TL+ GLC   R  +
Sbjct: 170 SGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSD 229

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           A ++  D+M+  ++ PD   F +LI      G L  A  + +EM++  ++ +   Y+S+I
Sbjct: 230 AARMLRDMMK-RSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSII 288

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
           + L   GR  +       M  +GC PN VTYN LISGFCK    +    +   M  +G  
Sbjct: 289 NGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFN 348

Query: 326 ANPISYNVILGGLCKDGK 343
           A+  +YN ++ G C+ GK
Sbjct: 349 ADIFTYNTLIHGYCQVGK 366



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 2/242 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           A +M  +M   ++   V  F  L++  +  G LD  +EL+ ++++  V P+  +YN +I+
Sbjct: 230 AARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIIN 289

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G  +  RL DA K FD M  +   P +VT+ TLI G C    VDE +KL +  M      
Sbjct: 290 GLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQR-MSCEGFN 348

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
            D   + +LI G C VG+L +AL +   MV  ++  D   +  L+  L   G        
Sbjct: 349 ADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVK 408

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             +M+E       V YN +I G CK +  E A+ +   +  +G K +  +Y +++ GLCK
Sbjct: 409 FDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCK 468

Query: 341 DG 342
           +G
Sbjct: 469 NG 470



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 140/299 (46%), Gaps = 9/299 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +LLH   ++ ++G     D    ++  +K      P  +++  +I    +   L  AL++
Sbjct: 146 SLLHGFCLVNRIG-----DAFSLVILMVKSGYE--PNVVVYNTLIDGLCKNGELNIALEL 198

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
            +EM    +   V  +NTLL      G+  D  + L  +M++ ++PD  ++  LI   V 
Sbjct: 199 LNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVK 258

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++A +++ EM++  + P  VT+ ++I GLC+  R+ +A K   D+M      P+  
Sbjct: 259 QGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKK-TFDLMASKGCFPNVV 317

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G C    +   + + + M  +    D   Y++LI    + G+      I   M
Sbjct: 318 TYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWM 377

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             R   P+ +T+  L+ G C   + E+A    D+M +       ++YN+++ GLCK  K
Sbjct: 378 VSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADK 436


>gi|357167657|ref|XP_003581270.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Brachypodium distachyon]
          Length = 560

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 143/293 (48%), Gaps = 36/293 (12%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS 110
           ++++  L R K     +++L +L+ D   +P  + + +VI  Y ++  +E A+ ++++M 
Sbjct: 267 NILVGGLCRVKEVSRGREVLRRLQRDGVCMPNVVTYTSVISGYCKSGRMEDAMAVYNDM- 325

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLED 170
                             + CG                +P+A +YN+LI+G   +  +  
Sbjct: 326 ------------------IGCG---------------TTPNAVTYNVLINGYGKAGNMGS 352

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           A  V+ +M+ RR  P +VTF TLI G C   ++D+A++   + M  Y ++P+   F+ +I
Sbjct: 353 AVAVYQQMILRRCPPDVVTFSTLIDGYCRCGQLDDAMRTWTE-MSQYQIQPNAHTFSIII 411

Query: 231 KGLCAVGELSLALG-VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
              C     + AL  +KE  +R  I   A I + +I  L K G+ +E   IL EM+ +GC
Sbjct: 412 LSFCKQNRSAEALRFLKELNMRTDIAPRAFICNPVIDVLCKGGKVDEANLILMEMEGKGC 471

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +P+  TY  LI G C +     A T  ++M D GC  + I+ N  +G L K G
Sbjct: 472 RPDKYTYTILIIGHCMKGRISEAITFFNKMVDTGCSPDSITVNSFIGCLLKAG 524



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 132/299 (44%), Gaps = 8/299 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I+ L ++    +  ++  Q+   +   P       + G    A  L+ A  +  + 
Sbjct: 124 YRYVISMLCQSSRHTDALKLFDQMTDQSGHFPNARFLSFLAGSCANAGFLDAAAALLSKA 183

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDACSYNILIHGCVVSRR 167
             F   +    +N L+N  + CG++     LF+  I     SPD  S+N+ I G      
Sbjct: 184 PQFGCCVEAYAYNKLMNSFIGCGRVQDAVALFEGWIQGGAYSPDVWSFNVAIKGVCQVGD 243

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN---VKPDGQ 224
           ++ A ++ + M +    P  VT   L+ GLC   RV E  + +E + R+       P+  
Sbjct: 244 VQKALELVERMAEFGCSPDTVTNNILVGGLC---RVKEVSRGREVLRRLQRDGVCMPNVV 300

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + S+I G C  G +  A+ V  +M+      +A  Y+ LI+   KAG      A+ ++M
Sbjct: 301 TYTSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQM 360

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             R C P+ VT++ LI G+C+    + A     EM     + N  ++++I+   CK  +
Sbjct: 361 ILRRCPPDVVTFSTLIDGYCRCGQLDDAMRTWTEMSQYQIQPNAHTFSIIILSFCKQNR 419



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 119/248 (47%), Gaps = 4/248 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYN 156
           +++AL++ + M+ F         N L+       ++ R +E+ + +++     P+  +Y 
Sbjct: 244 VQKALELVERMAEFGCSPDTVTNNILVGGLCRVKEVSRGREVLRRLQRDGVCMPNVVTYT 303

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            +I G   S R+EDA  V+++M+     P  VT+  LI G      +  A+ + +  M +
Sbjct: 304 SVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQ-MIL 362

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
               PD   F++LI G C  G+L  A+    EM + +I+ +A  +S +I +  K  R  E
Sbjct: 363 RRCPPDVVTFSTLIDGYCRCGQLDDAMRTWTEMSQYQIQPNAHTFSIIILSFCKQNRSAE 422

Query: 277 FPAILKEMKERG-CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
               LKE+  R    P +   N +I   CK    + A  IL EM  KGC+ +  +Y +++
Sbjct: 423 ALRFLKELNMRTDIAPRAFICNPVIDVLCKGGKVDEANLILMEMEGKGCRPDKYTYTILI 482

Query: 336 GGLCKDGK 343
            G C  G+
Sbjct: 483 IGHCMKGR 490



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 98/233 (42%), Gaps = 37/233 (15%)

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR-----------LQPTLVTFGTL--- 193
           + P A SY  +I     S R  DA K+FD+M  +            L  +    G L   
Sbjct: 117 IPPSAHSYRYVISMLCQSSRHTDALKLFDQMTDQSGHFPNARFLSFLAGSCANAGFLDAA 176

Query: 194 --------IYGLCLEL--------------RVDEALKLKEDIMRVYNVKPDGQVFASLIK 231
                    +G C+E               RV +A+ L E  ++     PD   F   IK
Sbjct: 177 AALLSKAPQFGCCVEAYAYNKLMNSFIGCGRVQDAVALFEGWIQGGAYSPDVWSFNVAIK 236

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG-CK 290
           G+C VG++  AL + E M       D    + L+  L +    +    +L+ ++  G C 
Sbjct: 237 GVCQVGDVQKALELVERMAEFGCSPDTVTNNILVGGLCRVKEVSRGREVLRRLQRDGVCM 296

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           PN VTY ++ISG+CK    E A  + ++M   G   N ++YNV++ G  K G 
Sbjct: 297 PNVVTYTSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLINGYGKAGN 349


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/251 (35%), Positives = 130/251 (51%), Gaps = 4/251 (1%)

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF--QIMEKYVSPD 151
            +  ++E A  ++ +M +  +Q ++  FNTL+N     GK+ R  EL   QI +  +SPD
Sbjct: 174 AKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKV-REAELILSQIFQYDLSPD 232

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +Y  LI G   +R L+ A+ VFD MVK    P  VT+ TLI GLC E RVDEAL + E
Sbjct: 233 VFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLE 292

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           +++    ++P    +   I  LCA+     A+ +   M +     +   Y++LIS L + 
Sbjct: 293 EMIE-KGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRL 351

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G+      +  +M + G  PN+VTYNALI+  C    F  A  I   M   G  AN  +Y
Sbjct: 352 GKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTY 411

Query: 332 NVILGGLCKDG 342
           N I+ GLC  G
Sbjct: 412 NEIIKGLCLGG 422



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 135/264 (51%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    +  +I    R   LE A+ ++ +M    +      +N L+N     G+     ++
Sbjct: 336 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKI 395

Query: 141 FQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F  ME + S  +  +YN +I G  +   +E A  +F++M+K    PT+VT+ TLI G   
Sbjct: 396 FHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLT 455

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  V+ A +L  D+M+    +PD   +  L+ G    G+L  A    +EMV   +  +  
Sbjct: 456 KGNVNNAARLL-DLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPV 514

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI    K G+ +   ++LK M+E GC PN  +YNA+I+G  KE  F  A  I D+M
Sbjct: 515 SYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKM 574

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
            ++G   N I+Y  ++ GLC++G+
Sbjct: 575 VEQGLLPNVITYTTLIDGLCRNGR 598



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 150/331 (45%), Gaps = 36/331 (10%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y+ +I +L     F    +I H ++    +   +  +  +I        +E+A+ +
Sbjct: 372 NTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQT-YNEIIKGLCLGGDIEKAMVL 430

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F++M       TV  +NTL+N  LT G ++    L  +M E    PD  +YN L+ G   
Sbjct: 431 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 490

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL--------------- 209
             +LE A   F EMV+  L P  V++  LI G   + +VD AL L               
Sbjct: 491 WGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVES 550

Query: 210 ---------KE----------DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
                    KE          D M    + P+   + +LI GLC  G    A  +  +M 
Sbjct: 551 YNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDME 610

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
           + K   +   YSSLI  L + G+ +E   +LKEM+ +G  P+ VT+ +LI GF      +
Sbjct: 611 KRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRID 670

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            AF +L  M D GCK N  +Y+V+L GL K+
Sbjct: 671 HAFLLLRRMVDMGCKPNYRTYSVLLKGLQKE 701



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 131/277 (47%), Gaps = 2/277 (0%)

Query: 68  QILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127
            +L++L  D    P + I   +I        + R     +E+S      ++   NTLL  
Sbjct: 113 SMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQ 172

Query: 128 KLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
                 ++  + L+ Q++   + P   ++N LI+      ++ +A  +  ++ +  L P 
Sbjct: 173 LAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPD 232

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
           + T+ +LI G C    +D A  + + +++     P+   +++LI GLC  G +  AL + 
Sbjct: 233 VFTYTSLILGHCRNRNLDLAFGVFDRMVK-EGCDPNSVTYSTLINGLCNEGRVDEALDML 291

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           EEM+   IE     Y+  I+AL     + E   ++  MK+RGC+PN  TY ALISG  + 
Sbjct: 292 EEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRL 351

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              E A  +  +M  +G   N ++YN ++  LC  G+
Sbjct: 352 GKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGR 388


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 151/315 (47%), Gaps = 19/315 (6%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  +   Y  +IT L  A   ++   +  ++K    + P    +  +I  + +A L+E
Sbjct: 451 KGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKM-VGVTPDVYTYTILIDSFCKAGLIE 509

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
           +A  +F+EM S     TV  +  L++  L   ++ +  ++F  M +    P+  +Y  L+
Sbjct: 510 QAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALV 569

Query: 160 HGCVVSRRLEDAWKVFDEMV----------------KRRLQPTLVTFGTLIYGLCLELRV 203
            G   +  +  A++V+ +++                +  L P +VT+G L+ GLC   +V
Sbjct: 570 DGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKV 629

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
           D A +L  D M     +P+  V+ +LI G C  G++  A  V  +M +         Y+S
Sbjct: 630 DHAHELL-DAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTS 688

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LI  +FK GR +    +L +M +  C PN VTY A+I G C+  + E A  +L  M +KG
Sbjct: 689 LIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG 748

Query: 324 CKANPISYNVILGGL 338
           C  N ++Y  ++ GL
Sbjct: 749 CSPNVVTYTALIDGL 763



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 136/297 (45%), Gaps = 17/297 (5%)

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
           FD+  Q++ ++      VP    +  VI F   A  +E+A  +F EM    V   V  + 
Sbjct: 438 FDKAFQLIKEMMRKG-FVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYT 496

Query: 123 TLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
            L++     G +++ + LF+ M     SP   +Y  LIH  + ++++  A  +F  MV  
Sbjct: 497 ILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDA 556

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV---------------YNVKPDGQVF 226
             +P  VT+G L+ GLC    + +A ++   ++                 + + P+   +
Sbjct: 557 GCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTY 616

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
            +L+ GLC   ++  A  + + M+    E +  +Y +LI    KAG+ +    +  +M +
Sbjct: 617 GALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTK 676

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            G  P+  TY +LI    K+   + A  +L +M    C  N ++Y  ++ GLC+ G+
Sbjct: 677 CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGE 733



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 133/299 (44%), Gaps = 13/299 (4%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           +I+ L  A  FDE    LH+++ ++  +P  + +  ++  + + + L    ++ + M + 
Sbjct: 282 MISGLMEASYFDEAMSFLHRMRCNS-CIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTE 340

Query: 113 NVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
                   FN+L++    C + D     K L ++      P    YNI I       +L 
Sbjct: 341 GCNPNPSLFNSLVHS--YCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLP 398

Query: 170 D------AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
                  A K++ EM+        V        LC   + D+A +L +++MR   V PD 
Sbjct: 399 SPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFV-PDT 457

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             ++ +I  LC   ++  A  + +EM    +  D   Y+ LI +  KAG   +   + +E
Sbjct: 458 STYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEE 517

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           M+  GC P  VTY ALI  + K +    A  I   M D GC+ N ++Y  ++ GLCK G
Sbjct: 518 MRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAG 576



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 114/257 (44%), Gaps = 8/257 (3%)

Query: 88  NVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEK 146
           + +GF GRAR  ER L+   E+   + ++  +  N L+      G  +  ++EL ++ + 
Sbjct: 147 DALGFDGRARDAERLLR---EIGEEDREVLGRLLNVLVRRCCRGGMWNEALEELGRLKDF 203

Query: 147 YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA 206
              P   +YN L+     + +++  ++V  EM +        T G   + LC E R  +A
Sbjct: 204 GYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA 263

Query: 207 LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266
           L    D++   + K D  +   +I GL        A+     M  +    +   Y +L+S
Sbjct: 264 L----DMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLS 319

Query: 267 ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326
              K  +      I+  M   GC PN   +N+L+  +C E+D+  A+ +L+ M   GC  
Sbjct: 320 GFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPP 379

Query: 327 NPISYNVILGGLCKDGK 343
             + YN+ +G +C   K
Sbjct: 380 GYVVYNIFIGSICGQEK 396


>gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa]
 gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 142/290 (48%), Gaps = 7/290 (2%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQMFDEMSS 111
           ++   G +KM  E  Q+   ++ +       +  C V+     + RL +   +++ +M  
Sbjct: 142 LVIVYGNSKMTHEAIQVFEHMRVNG--FRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVK 199

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLED 170
             V   +  +N LL+     G +++ +++   ME K V PD  +YN LI          +
Sbjct: 200 LGVVANIHVYNVLLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYE 259

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           A  V D M    + P + T+ +LIYG C E R+ EA++L  DI    +V P+   + SLI
Sbjct: 260 ALSVQDRMEMAGISPDIFTYNSLIYGFCREGRMREAVQLFRDIK---DVTPNHVTYTSLI 316

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
            G C V +L  AL +KE M    +      Y+S++  L + GR  +   +L EM ER  +
Sbjct: 317 DGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIE 376

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           P++VT N LI+ +CK  D  +A  + D+M   G K +  +Y  ++ G CK
Sbjct: 377 PDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCK 426



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 149/295 (50%), Gaps = 3/295 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y++++    ++   ++ +++L +++    + P    +  +I  Y +  +   AL +
Sbjct: 205 NIHVYNVLLHACCKSGDVEKAEKVLSEMELKC-VFPDLFTYNTLISLYCKKGMHYEALSV 263

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
            D M    +   +  +N+L+      G++    +LF+ + K V+P+  +Y  LI G    
Sbjct: 264 QDRMEMAGISPDIFTYNSLIYGFCREGRMREAVQLFRDI-KDVTPNHVTYTSLIDGYCRV 322

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             L++A ++ + M ++ L PT++T+ +++  LC   R+ +A  L  + M    ++PD   
Sbjct: 323 NDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNE-MSERKIEPDNVT 381

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
             +LI   C +G++  AL VK++MV   +++D   Y +LI    KA   ++   +L  M 
Sbjct: 382 CNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMM 441

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + G  P+  TY+ L+  +CK+++ EA   + DE+  +G   +   Y  ++   CK
Sbjct: 442 DAGFSPSYCTYSWLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVYRALIRRFCK 496



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 140/291 (48%), Gaps = 19/291 (6%)

Query: 61  KMFDEMQQILHQLK--HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM--SSF--NV 114
           K F   Q +L  L   HD   V   ++   VI  YG +++   A+Q+F+ M  + F  ++
Sbjct: 113 KDFLSTQSVLSSLVKIHDDPDVNSHVLSWLVI-VYGNSKMTHEAIQVFEHMRVNGFRPHL 171

Query: 115 QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWK 173
                  N+L   +LT    D + ++++ M K  V  +   YN+L+H C  S  +E A K
Sbjct: 172 HACTVLLNSLAKDRLT----DTVWKIYKKMVKLGVVANIHVYNVLLHACCKSGDVEKAEK 227

Query: 174 VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGL 233
           V  EM  + + P L T+ TLI   C +    EAL + +D M +  + PD   + SLI G 
Sbjct: 228 VLSEMELKCVFPDLFTYNTLISLYCKKGMHYEALSV-QDRMEMAGISPDIFTYNSLIYGF 286

Query: 234 CAVGELSLALGVKEEMVRD--KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           C  G +  A+    ++ RD   +  +   Y+SLI    +    +E   + + M E+G  P
Sbjct: 287 CREGRMREAV----QLFRDIKDVTPNHVTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYP 342

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             +TYN+++   C+      A  +L+EM ++  + + ++ N ++   CK G
Sbjct: 343 TVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVTCNTLINAYCKIG 393



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 5/278 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y+ +I    R     E  Q+   +K    + P  + + ++I  Y R   L+ AL++
Sbjct: 275 DIFTYNSLIYGFCREGRMREAVQLFRDIKD---VTPNHVTYTSLIDGYCRVNDLDEALRL 331

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
            + MS   +  TV  +N++L      G+L D    L ++ E+ + PD  + N LI+    
Sbjct: 332 KEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVTCNTLINAYCK 391

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +  A KV D+MV   L+    T+  LI+G C    +D+A +L   +M      P   
Sbjct: 392 IGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDA-GFSPSYC 450

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++ L+   C        + + +E+VR  + +D  +Y +LI    K  + +    +L  M
Sbjct: 451 TYSWLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVYRALIRRFCKIEKIDCAQRVLGLM 510

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           K++G   +SV Y +L  G+ K         ILDEM  K
Sbjct: 511 KDKGIFGDSVVYTSLAYGYWKVGKVNVTSDILDEMYKK 548



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 1/139 (0%)

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           EA+++ E  MRV   +P       L+  L           + ++MV+  +  +  +Y+ L
Sbjct: 154 EAIQVFEH-MRVNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVKLGVVANIHVYNVL 212

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           + A  K+G   +   +L EM+ +   P+  TYN LIS +CK+     A ++ D M   G 
Sbjct: 213 LHACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEMAGI 272

Query: 325 KANPISYNVILGGLCKDGK 343
             +  +YN ++ G C++G+
Sbjct: 273 SPDIFTYNSLIYGFCREGR 291


>gi|224088774|ref|XP_002308534.1| predicted protein [Populus trichocarpa]
 gi|222854510|gb|EEE92057.1| predicted protein [Populus trichocarpa]
          Length = 567

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 183/400 (45%), Gaps = 67/400 (16%)

Query: 4   SSIRLACLPRLQKDPKLALQLF---KNPNPNPNDTE--------------AHPLKPFRYN 46
           S++ +  +   Q +P  AL  F    N NPNPN+                +H L P   N
Sbjct: 60  SNLVIEVIKEQQPNPYQALFFFNWASNLNPNPNNYSHNHRCYVAIIDLLLSHSLFPIAKN 119

Query: 47  LLH-----YDLIITKLGRAKMFD--------------EMQQ------------------- 68
           LL       DL+++KL RA  +               E+QQ                   
Sbjct: 120 LLEKHGTFSDLLVSKLIRAYGYSGDTKSAIFWFHKVKEIQQGKCLFSWNAILGVLVKVNQ 179

Query: 69  ------ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
                    Q+ +D  + P    +  +I  + +  +++ A ++FDEM      +T    N
Sbjct: 180 INVAKSFFDQIVNDAVVKPDASTYTTMIRGFCKVGMIDNARKVFDEMICEPNLITC---N 236

Query: 123 TLLNPKLTCGKLDRMKE-LFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           TL+N     G ++  +  L ++ME K   PD  +Y+ LI G      L +A K  D M+ 
Sbjct: 237 TLINGYCKKGDMENARIFLCRMMESKDCLPDTVTYSTLIDGYCKKGELNEARKWMDGMLI 296

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           R   P L T+  +IYGLCL   VDEA +L    MR+  VK +     S++KGL   G+  
Sbjct: 297 RGCNPNLWTYNAIIYGLCLRGNVDEARRLLTK-MRLNGVKENVATHLSILKGLSVAGKSE 355

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A+G   EM+R  +++DA  +  +I+A  K  + +E  ++LKEM+ +G   +  ++NA++
Sbjct: 356 EAIGYFSEMIRKGMKLDAKEHEVVITAYCKMRKPDEAISLLKEMQAKGISRSVGSFNAVL 415

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
               +  + + A  +L ++ + GC  N +SY+ ++ GLC+
Sbjct: 416 RILVEIGELDKAVLLLKQVKNMGCLPNLVSYSTVICGLCR 455



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 108/265 (40%), Gaps = 36/265 (13%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+  + +I    +    +  +  L ++      +P  + +  +I  Y +   L  A + 
Sbjct: 231 NLITCNTLINGYCKKGDMENARIFLCRMMESKDCLPDTVTYSTLIDGYCKKGELNEARKW 290

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            D M        +  +N ++      G +D  + L   M    V  +  ++  ++ G  V
Sbjct: 291 MDGMLIRGCNPNLWTYNAIIYGLCLRGNVDEARRLLTKMRLNGVKENVATHLSILKGLSV 350

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED------------ 212
           + + E+A   F EM+++ ++        +I   C   + DEA+ L ++            
Sbjct: 351 AGKSEEAIGYFSEMIRKGMKLDAKEHEVVITAYCKMRKPDEAISLLKEMQAKGISRSVGS 410

Query: 213 ---IMRVY--------------NVK-----PDGQVFASLIKGLC-AVGELSLALGVKEEM 249
              ++R+                VK     P+   ++++I GLC + G +    G+ ++M
Sbjct: 411 FNAVLRILVEIGELDKAVLLLKQVKNMGCLPNLVSYSTVICGLCRSHGRMQEVAGLVDDM 470

Query: 250 VRDKIEMDAGIYSSLISALFKAGRK 274
           ++D  EMDA +YS L+    +AG +
Sbjct: 471 LQDGFEMDATLYSCLVGGFCEAGNE 495


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 136/249 (54%), Gaps = 2/249 (0%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDAC 153
           +A  +E+   +F++M SF     V+ ++ L++     G+      +FQ M ++  + DA 
Sbjct: 537 KAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDAR 596

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN ++ G   S +++ A++V +EM  + + PT+ T+G+++ GL    R+DEA  L E+ 
Sbjct: 597 AYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEE- 655

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
            +   ++ +  +++SLI G   VG +  A  + EEM++  +  +   ++SL+ AL K   
Sbjct: 656 AKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEE 715

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +E     + MKE  C PN+ TY+ LI+G C+ + +  AF    EM  +G   N ++Y  
Sbjct: 716 IDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTT 775

Query: 334 ILGGLCKDG 342
           ++ GL K G
Sbjct: 776 MISGLAKVG 784



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 156/331 (47%), Gaps = 38/331 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NLL  ++++ +L +A   +E  +I      +    P  + +C++I   G+   ++ A ++
Sbjct: 419 NLLSVNIMVDRLCKANQLEEAHRIFES-ASERGCNPNSVTYCSLIDGLGKKGKIDDAYRL 477

Query: 106 FDEMSSFN--------VQMTVKFFN-----------------------TLLNPKLTC--- 131
           F++M              +   FF                        TLLN  + C   
Sbjct: 478 FEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFK 537

Query: 132 -GKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
            G++++ + +F+ M+ +   PD  SY+ILIHG   + +  +   +F  M ++        
Sbjct: 538 AGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARA 597

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           +  ++ GLC   +VD+A ++ E+ M+V +V P    + S++ GL  +  L  A  + EE 
Sbjct: 598 YNAVVDGLCKSGKVDKAYEVLEE-MKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEA 656

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
               IE++  +YSSLI    K GR +E   IL+EM ++G  PN  T+N+L+    K E+ 
Sbjct: 657 KSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEI 716

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + A      M +  C  N  +Y++++ GLC+
Sbjct: 717 DEALICFQSMKEMKCSPNTYTYSILINGLCR 747



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 136/289 (47%), Gaps = 9/289 (3%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  ++  Y ++I  L +A    E   I   +      +        V G     ++ ++A
Sbjct: 556 FLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKV-DKA 614

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME----KYVSPDACSYNIL 158
            ++ +EM   +V  TV  + ++++      K+DR+ E + + E    K +  +   Y+ L
Sbjct: 615 YEVLEEMKVKHVHPTVATYGSIVD---GLAKIDRLDEAYMLFEEAKSKGIELNVILYSSL 671

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G     R+++A+ + +EM+K+ L P + T+ +L+  L     +DEAL   +  M+   
Sbjct: 672 IDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQS-MKEMK 730

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
             P+   ++ LI GLC V + + A    +EM +  +  +   Y+++IS L K G   +  
Sbjct: 731 CSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAY 790

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           ++ +  K  G  P+S ++NALI G         A+ + +E   +GC+ N
Sbjct: 791 SLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRGCRLN 839



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 142/299 (47%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y++II  L  A   +E  +I  +++    + P  +    ++    +A  LE A ++
Sbjct: 384 NISTYNIIIDMLCMAGRVNEAYKIRDEMEL-AGLFPNLLSVNIMVDRLCKANQLEEAHRI 442

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           F+  S          + +L++     GK+D    LF+ +++     +   Y  LI    +
Sbjct: 443 FESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFM 502

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R ED  K++ EM++R  +P L    T +  +     V++   + ED M+ +   PD +
Sbjct: 503 HGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFED-MKSFGFLPDVR 561

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++ LI GL   G+      + + M +    +DA  Y++++  L K+G+ ++   +L+EM
Sbjct: 562 SYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEM 621

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           K +   P   TY +++ G  K +  + A+ + +E   KG + N I Y+ ++ G  K G+
Sbjct: 622 KVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGR 680



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 150/360 (41%), Gaps = 71/360 (19%)

Query: 13  RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYN----LLHYDL---------------- 52
           R  K+P LA   F   +     + + PL P  YN     L +DL                
Sbjct: 83  RSLKNPSLAAPFFLLASA----SSSQPLPPDAYNAVLPFLSHDLAALEKVLEEMSHLGYG 138

Query: 53  --------IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
                   ++  L R++  ++  +++  ++H  +  P    +  +IG    AR  ERAL+
Sbjct: 139 LPNPACAALVATLVRSRRLEDAFRVIGAMRH-LKFRPPFSAYTVLIGALAEARQPERALE 197

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCV 163
           +  +M     +++V  F TL+      G+++    L  ++    + PD   YN+ I    
Sbjct: 198 LLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFG 257

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            +  ++ AWK F E+                                    + + ++PD 
Sbjct: 258 KAGSVDMAWKFFHEL------------------------------------KAHGLRPDD 281

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + S++  LC  G L  A  +  +M  ++    A  Y+++I     A R ++   +L+ 
Sbjct: 282 VSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLER 341

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           ++ERGC P+ V++N++++   K+   + A T+ D M  K  K N  +YN+I+  LC  G+
Sbjct: 342 LRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVM-KKDAKPNISTYNIIIDMLCMAGR 400


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 146/302 (48%), Gaps = 18/302 (5%)

Query: 43  FRYN-LLHYDLIITKLGRA----KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           F YN L+ Y   + K GR+    K+FD M +  H+        P    +  ++  Y    
Sbjct: 309 FTYNTLMGY---LCKNGRSMEARKIFDSMVKRGHK--------PNSATYGTLLHGYATEG 357

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYN 156
            L +   + D M    +Q     FN L+      GK+D    LF  M +  ++PD  +Y 
Sbjct: 358 SLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYG 417

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           I++    +  +++DA   F  ++   L P  V F  LI+GLC   + D+A +L  +++  
Sbjct: 418 IVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIG- 476

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             + P+   F +L+  LC  G ++ A  + + MVR  ++ D   Y++LI      G+ +E
Sbjct: 477 RGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDE 536

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +L+ M   G KPN VTYN +I+G+CK    E AF++  +M  KG     ++Y+ IL 
Sbjct: 537 AAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQ 596

Query: 337 GL 338
           GL
Sbjct: 597 GL 598



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 105/195 (53%), Gaps = 2/195 (1%)

Query: 150 PDACSYNILIHGCVV-SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           PD  SYN +I+G +   R+L+ A+ +FD+M+ + L P +VT+ ++I  L     +D+A  
Sbjct: 200 PDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAV 259

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           +   +++     P+     SL+ G C+ G+ + A+GV + M RD +E D   Y++L+  L
Sbjct: 260 VLVRMVK-NGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYL 318

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K GR  E   I   M +RG KPNS TY  L+ G+  E        +LD M   G + + 
Sbjct: 319 CKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDH 378

Query: 329 ISYNVILGGLCKDGK 343
             +N+++G   K GK
Sbjct: 379 YIFNILIGTYTKHGK 393



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 129/264 (48%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    +  ++G+  +      A ++FD M     +     + TLL+   T G L +M  L
Sbjct: 306 PDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHL 365

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
             +M +  + PD   +NILI       +++DA  +F +M ++ L P  VT+G ++  LC+
Sbjct: 366 LDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCM 425

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             +VD+A+     ++    + PD  VF +LI GLCA  +   A  +  EM+   I  +  
Sbjct: 426 VGKVDDAMAQFGRLIS-EGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNI 484

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            +++L++ L K G       I   M     + + +TYN LI G+C     + A  +L+ M
Sbjct: 485 FFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGM 544

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
              G K N ++YN ++ G CK+G+
Sbjct: 545 VLDGVKPNEVTYNTMINGYCKNGR 568



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 128/266 (48%), Gaps = 2/266 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  I F  ++    +  ++ RA  +FD M   +VQ  V  +NTL++     GK+D   
Sbjct: 479 ICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAA 538

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           +L + M    V P+  +YN +I+G   + R+EDA+ +F +M  + + P +VT+ T++ GL
Sbjct: 539 KLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGL 598

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
               R   A +L   +++   +K D   +  ++ GLC       AL + + +      ++
Sbjct: 599 FQARRTAAAKELYLWMIK-SGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLE 657

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              ++ +I AL K GR +E   +   +  RG  PN VTY  ++    ++   E    +  
Sbjct: 658 NRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFL 717

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
            +   GC AN    N ++G L + G+
Sbjct: 718 SLEKNGCTANSRMLNALVGKLLQKGE 743



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 6/212 (2%)

Query: 138 KELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           + +  +    V P+  +Y+++I  C     L+ A+     +++       +TF  L+  L
Sbjct: 77  RRMVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKAL 136

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV-----RD 252
           C + R  EA+ +    M V    P+   +  L+KGLC       AL +   M+     R 
Sbjct: 137 CDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRG 196

Query: 253 KIEMDAGIYSSLISALFKAGRK-NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
               D   Y+++I+ L + GR+ +    +  +M ++G  P+ VTYN++IS   K    + 
Sbjct: 197 GYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDK 256

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           A  +L  M   G   N I++N +L G C  GK
Sbjct: 257 AAVVLVRMVKNGAMPNRITHNSLLHGYCSSGK 288


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 155/303 (51%), Gaps = 5/303 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV-PKEIIFCNVIGFYGRARLLER 101
           F+ N + Y  +I   G  K+ D    I    K D R+  P  +++  +I    + +L+  
Sbjct: 160 FQLNQVSYATLIN--GVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSE 217

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIH 160
           A  +F EM+   +   V  +NTL+      GKL + +  L +++ K ++P+  +YNIL+ 
Sbjct: 218 AYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVD 277

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                 ++++A  V   M+K  ++P ++T+ TL+ G  L   V +A  +  + M +  V 
Sbjct: 278 ALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHV-FNAMSLMGVT 336

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   +  LI G C    +  AL + +EM +  +      YSSLI  L K+GR +    +
Sbjct: 337 PDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDL 396

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + EM++RG   + +TY++LI G CK    + A  + ++M D+  + N  ++ ++L GLCK
Sbjct: 397 IDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCK 456

Query: 341 DGK 343
            G+
Sbjct: 457 GGR 459



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 150/301 (49%), Gaps = 9/301 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL--LERAL 103
           +++ Y+ II  + + ++  E   +  ++    + +  +++  N +  YG   +  L+ A+
Sbjct: 198 DVVMYNTIIDAMCKYQLVSEAYGLFSEMA--VKGISADVVTYNTL-IYGFCIVGKLKEAI 254

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
            + +EM    +   V  +N L++     GK+   K +  +M K  V PD  +Y+ L+ G 
Sbjct: 255 GLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGY 314

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
            +   ++ A  VF+ M    + P + T+  LI G C    VDEAL L ++ M   N+ P 
Sbjct: 315 FLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKE-MHQKNMVPG 373

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIE-MDAGIYSSLISALFKAGRKNEFPAIL 281
              ++SLI GLC  G +S    + +EM RD+ +  D   YSSLI  L K G  +   A+ 
Sbjct: 374 IVTYSSLIDGLCKSGRISYVWDLIDEM-RDRGQPADVITYSSLIDGLCKNGHLDRAIALF 432

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            +MK++  +PN  T+  L+ G CK    + A  +  ++  KG   N  +YNV++ G CK 
Sbjct: 433 NKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQ 492

Query: 342 G 342
           G
Sbjct: 493 G 493



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 117/221 (52%), Gaps = 2/221 (0%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           ++TL++      ++ + + +F  M    V+PD  +Y ILI+G   ++ +++A  +F EM 
Sbjct: 307 YSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMH 366

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           ++ + P +VT+ +LI GLC   R+     L ++ MR      D   ++SLI GLC  G L
Sbjct: 367 QKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDE-MRDRGQPADVITYSSLIDGLCKNGHL 425

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A+ +  +M   +I  +   ++ L+  L K GR  +   + +++  +G   N  TYN +
Sbjct: 426 DRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVM 485

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           I+G CK+   E A T+L +M D GC  N  ++  I+  L K
Sbjct: 486 INGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFK 526



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 120/244 (49%), Gaps = 8/244 (3%)

Query: 107 DEMSSFNVQMTVKF------FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
           D +S FN  + ++       FN +L+             L   +E K + PD  + NILI
Sbjct: 42  DAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILI 101

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +      ++   + V  +++KR   P  VT  TLI GLCL+ +V +AL   + ++     
Sbjct: 102 NCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLL-AQGF 160

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           + +   +A+LI G+C +G+   A+    ++     + D  +Y+++I A+ K    +E   
Sbjct: 161 QLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYG 220

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +  EM  +G   + VTYN LI GFC     + A  +L+EM  K    N  +YN+++  LC
Sbjct: 221 LFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALC 280

Query: 340 KDGK 343
           K+GK
Sbjct: 281 KEGK 284



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 135/285 (47%), Gaps = 3/285 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LK    N+  Y++++  L +     E + +L  +     + P  I +  ++  Y     +
Sbjct: 262 LKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKAC-VKPDVITYSTLMDGYFLVYEV 320

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           ++A  +F+ MS   V   V  +  L+N       +D    LF+ M +K + P   +Y+ L
Sbjct: 321 KKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSL 380

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   S R+   W + DEM  R     ++T+ +LI GLC    +D A+ L    M+   
Sbjct: 381 IDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNK-MKDQE 439

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           ++P+   F  L+ GLC  G L  A  V ++++     ++   Y+ +I+   K G   E  
Sbjct: 440 IRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEAL 499

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
            +L +M++ GC PN+ T+  +I    K+++ + A  +L +M  +G
Sbjct: 500 TMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 544


>gi|302763305|ref|XP_002965074.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
 gi|300167307|gb|EFJ33912.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
          Length = 484

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 146/297 (49%), Gaps = 6/297 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y+ +I  L +    D    +  +L HD  + P    +  ++    +A  LE A+++
Sbjct: 147 NVATYNTVINGLCKFGKIDWAVHLFTRLPHDL-VDPDGFTYSTLVHGLCQAERLEAAIKV 205

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG-CV 163
           +D M   N       +N + +      ++D   E+ + M ++   P   +YN +I+G C 
Sbjct: 206 YDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRRCKPSVVTYNCIINGVCQ 265

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              R+E+A+++F +MV     P  VT+GT+I GL     V   L+L + + +   + PDG
Sbjct: 266 YKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKA-GLSPDG 324

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG--RKNEFPAIL 281
             + SLI     V +L  A  + ++  R+ +  D  +Y++LIS   +A   R +E   + 
Sbjct: 325 YAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLISGYCRARKPRVDEALLLF 384

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           + MK+R   PN +TYN ++ G CK   F+ A+ I  EM    C  N +++ V+  G+
Sbjct: 385 QNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTMGM 441



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 143/305 (46%), Gaps = 44/305 (14%)

Query: 80  VPKEIIFCNVI--GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           +P ++   NV+  G+    R+  RAL  F +M     +  V  +NT++N     GK+D  
Sbjct: 110 IPPDVTAYNVVLKGYCDLGRV-GRALIKFGKMGK-TCKPNVATYNTVINGLCKFGKIDWA 167

Query: 138 KELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFD-------------------- 176
             LF ++    V PD  +Y+ L+HG   + RLE A KV+D                    
Sbjct: 168 VHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKVYDMMLEANYDGDAGAYNAMADG 227

Query: 177 ---------------EMVKRRLQPTLVTFGTLIYGLC-LELRVDEALKLKEDIMRVYNVK 220
                           M++RR +P++VT+  +I G+C  + R++EA +L + ++   +  
Sbjct: 228 FCKERRVDEALEVLKTMIQRRCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGS-DCP 286

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   + ++I GL  + E+   L + + M +  +  D   Y SLI A  K  + +E  +I
Sbjct: 287 PNAVTYGTMILGLSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSI 346

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEED--FEAAFTILDEMGDKGCKANPISYNVILGGL 338
           L++       P+   Y  LISG+C+      + A  +   M D+    N I+YN++L GL
Sbjct: 347 LQDAARNHVGPDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGL 406

Query: 339 CKDGK 343
           CK G+
Sbjct: 407 CKTGR 411



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 129/300 (43%), Gaps = 40/300 (13%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQIL-HQLKHDTRIVPKEIIFCNVIGFYGRARLLER 101
           +R+++  Y  ++  L RA+   E  +    +L    R  P    F  +I  +   R   R
Sbjct: 40  YRHDVYCYTRLLHHLVRARRTREAVRFFKRELCAHCR--PSLYSFTIIIQCFCNVRNPGR 97

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161
           A +    M S  +   V  +N +L      G++ R    F  M K   P+  +YN +I+G
Sbjct: 98  AWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRALIKFGKMGKTCKPNVATYNTVING 157

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                +++ A  +F  +    + P   T+ TL++GLC   R++ A+K+  D+M   N   
Sbjct: 158 LCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKV-YDMMLEANYDG 216

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + ++  G C           KE  V + +E                        +L
Sbjct: 217 DAGAYNAMADGFC-----------KERRVDEALE------------------------VL 241

Query: 282 KEMKERGCKPNSVTYNALISGFCKEED-FEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           K M +R CKP+ VTYN +I+G C+ ++  E A+ +  +M    C  N ++Y  ++ GL K
Sbjct: 242 KTMIQRRCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSK 301



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 102/241 (42%), Gaps = 18/241 (7%)

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL--------FQIMEKYVSPDACSYNILIH 160
           M+SFN           L P+L    + R+  L        +   ++    D   Y  L+H
Sbjct: 1   MASFNA--------AFLEPRLVGSVIRRVPSLALARKFFDWSSKQEGYRHDVYCYTRLLH 52

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
             V +RR  +A + F   +    +P+L +F  +I   C       A +     MR   + 
Sbjct: 53  HLVRARRTREAVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYL-GYMRSLGIP 111

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   +  ++KG C +G +  AL +K   +    + +   Y+++I+ L K G+ +    +
Sbjct: 112 PDVTAYNVVLKGYCDLGRVGRAL-IKFGKMGKTCKPNVATYNTVINGLCKFGKIDWAVHL 170

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
              +      P+  TY+ L+ G C+ E  EAA  + D M +     +  +YN +  G CK
Sbjct: 171 FTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKVYDMMLEANYDGDAGAYNAMADGFCK 230

Query: 341 D 341
           +
Sbjct: 231 E 231



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 112/243 (46%), Gaps = 6/243 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF-CNVIGFYGRARLLERALQMFDE 108
           Y+ +     + +  DE  ++L  +    R  P  + + C + G       +E A ++F +
Sbjct: 221 YNAMADGFCKERRVDEALEVLKTMIQ-RRCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQ 279

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRR 167
           M   +       + T++       ++ R  ELF+ M K  +SPD  +Y+ LI+  V  R+
Sbjct: 280 MVGSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRK 339

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL--ELRVDEALKLKEDIMRVYNVKPDGQV 225
           L++A  +  +  +  + P +  + TLI G C   + RVDEAL L ++ M+   V P+   
Sbjct: 340 LDEAKSILQDAARNHVGPDVYMYTTLISGYCRARKPRVDEALLLFQN-MKDRRVWPNVIT 398

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           +  +++GLC  G    A  + +EM + K   +   +  +   +    + ++F  I  +M 
Sbjct: 399 YNIVLRGLCKTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTMGMIHCRKTDKFERIFMDMV 458

Query: 286 ERG 288
            +G
Sbjct: 459 YKG 461



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 93/184 (50%), Gaps = 10/184 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR--IVPKEIIFCNVIGFYGRARLLERAL 103
           N + Y  +I  LG +K++ E+Q+ L   K  ++  + P    + ++I  + + R L+ A 
Sbjct: 288 NAVTYGTMI--LGLSKIY-EVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAK 344

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGK--LDRMKELFQIM-EKYVSPDACSYNILIH 160
            +  + +  +V   V  + TL++      K  +D    LFQ M ++ V P+  +YNI++ 
Sbjct: 345 SILQDAARNHVGPDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLR 404

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G   + R ++A+++F EM K +  P  +TF  +  G+    + D+  ++  D+  VY  +
Sbjct: 405 GLCKTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTMGMIHCRKTDKFERIFMDM--VYKGR 462

Query: 221 PDGQ 224
             G+
Sbjct: 463 WQGE 466



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L  M+  G  P+   YN ++ G+C       A     +MG K CK N  +YN ++ GLCK
Sbjct: 102 LGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRALIKFGKMG-KTCKPNVATYNTVINGLCK 160

Query: 341 DGK 343
            GK
Sbjct: 161 FGK 163



 Score = 41.6 bits (96), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 38/87 (43%)

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           D   Y+ L+  L +A R  E     K      C+P+  ++  +I  FC   +   A+  L
Sbjct: 43  DVYCYTRLLHHLVRARRTREAVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYL 102

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
             M   G   +  +YNV+L G C  G+
Sbjct: 103 GYMRSLGIPPDVTAYNVVLKGYCDLGR 129


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 124/256 (48%), Gaps = 3/256 (1%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKY 147
           V GF    R+ E AL+   E+S          FN+L+N     G ++   ++   M EK 
Sbjct: 235 VNGFCKEGRV-EEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKG 293

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
             PD  +YN LI G       E A ++  +M+ R   P  VT+ TLI  LC E  ++ A 
Sbjct: 294 FDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAAT 353

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            L   I+    + PD   F +LI+GLC      +A+ + EEM     + D   YS LI +
Sbjct: 354 DLAR-ILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDS 412

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L    R  E   +LKEM+  GC  N+V YN LI G CK    E A  I D+M   G   +
Sbjct: 413 LCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRS 472

Query: 328 PISYNVILGGLCKDGK 343
            ++YN ++ GLCK+ +
Sbjct: 473 SVTYNTLIDGLCKNKR 488



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 154/322 (47%), Gaps = 14/322 (4%)

Query: 25  FKNPN--PNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK 82
           FK P     P+ T  HPL P        + ++ +L ++  FD +  +L QLK    I P 
Sbjct: 38  FKFPTLCTTPSSTTHHPLPP-------NETLLLQLTQSSSFDSITTLLKQLKSSGSI-PN 89

Query: 83  EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF- 141
              F  +I  +     +E  L++ +    F  +    F+N  LN  +   KL  ++ L  
Sbjct: 90  ATTFATLIQSFTNFHEIENLLKILENELGF--KPDTNFYNIALNALVEDNKLKLVEMLHS 147

Query: 142 QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
           +++ + +  D  ++N+LI     + +L  A  + +EM    L+P  +TF TL+ G   E 
Sbjct: 148 KMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEG 207

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
            ++ ALK+K+ ++  Y           L+ G C  G +  AL    E+  +    D   +
Sbjct: 208 DLNGALKMKKQMLG-YGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTF 266

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           +SL++   + G  N+   I+  M E+G  P+  TYN+LISG CK  +FE A  IL +M  
Sbjct: 267 NSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMIL 326

Query: 322 KGCKANPISYNVILGGLCKDGK 343
           + C  N ++YN ++  LCK+ +
Sbjct: 327 RECSPNTVTYNTLISALCKENE 348



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 128/246 (52%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
            E+A+++  +M           +NTL++      +++   +L +I+  K + PD C++N 
Sbjct: 314 FEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNT 373

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G  +S+  + A ++F+EM  +  +P   T+  LI  LC E R+ EAL L ++ M   
Sbjct: 374 LIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKE-MESS 432

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
               +  V+ +LI GLC    +  A  + ++M    +   +  Y++LI  L K  R  E 
Sbjct: 433 GCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEA 492

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++ +M   G KP+  TYN+L++ FC+  D E A  I+  M   GC+ +  +Y  ++GG
Sbjct: 493 SQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGG 552

Query: 338 LCKDGK 343
           LC+ G+
Sbjct: 553 LCRAGR 558



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 147/301 (48%), Gaps = 9/301 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y+ +I+ L +     E    L ++     ++P    F  +I     ++  + A++M
Sbjct: 332 NTVTYNTLISALCKENEI-EAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEM 390

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP----DACSYNILIHG 161
           F+EM +   +   +F  ++L   L   +  R+KE   ++++  S     +A  YN LI G
Sbjct: 391 FEEMKNKGCKPD-EFTYSILIDSLCYER--RLKEALMLLKEMESSGCARNAVVYNTLIDG 447

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              SRR+EDA ++FD+M    +  + VT+ TLI GLC   RV+EA +L  D M +  +KP
Sbjct: 448 LCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLM-DQMIMEGLKP 506

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + SL+   C VG++  A  + + M  +  E D   Y +LI  L +AGR +    +L
Sbjct: 507 DKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLL 566

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           + ++ +G       YN +I      +  +    +  EM +K    + +++ ++  GLC  
Sbjct: 567 RSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLCNG 626

Query: 342 G 342
           G
Sbjct: 627 G 627



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 139/299 (46%), Gaps = 3/299 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  ++  Y+ +I+ + +   F++  +IL Q+       P  + +  +I    +   +E
Sbjct: 292 KGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMIL-RECSPNTVTYNTLISALCKENEIE 350

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
            A  +   + S  +   V  FNTL+         D   E+F+ M+ K   PD  +Y+ILI
Sbjct: 351 AATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILI 410

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
                 RRL++A  +  EM         V + TLI GLC   R+++A ++  D M +  V
Sbjct: 411 DSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIF-DQMELLGV 469

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
                 + +LI GLC    +  A  + ++M+ + ++ D   Y+SL++   + G   +   
Sbjct: 470 SRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGD 529

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           I++ M   GC+P+  TY  LI G C+    + A  +L  +  KG    P +YN ++  L
Sbjct: 530 IVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQAL 588



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 121/293 (41%), Gaps = 39/293 (13%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++ +I  L  +K  D   ++  ++K+     P E  +  +I      R L+ AL +  EM
Sbjct: 371 FNTLIQGLCLSKNQDIAMEMFEEMKNKG-CKPDEFTYSILIDSLCYERRLKEALMLLKEM 429

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
            S         +NTL++      +++  +E+F  ME   VS  + +YN LI G   ++R+
Sbjct: 430 ESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRV 489

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E+A ++ D+M+   L+P   T+ +L+   C    +++A  + +  M     +PD   + +
Sbjct: 490 EEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQ-TMASNGCEPDIFTYGT 548

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER- 287
           LI GLC  G + +A  +   +    I +    Y+ +I ALF   R  E   + +EM E+ 
Sbjct: 549 LIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKS 608

Query: 288 -----------------------------------GCKPNSVTYNALISGFCK 305
                                              G  P   ++  L  G C 
Sbjct: 609 DPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPEFPSFGFLAEGLCS 661



 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 102/236 (43%), Gaps = 49/236 (20%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I  L + K  +E  Q++ Q+  +  + P +  + +++ ++ R   +E+A  +   M
Sbjct: 476 YNTLIDGLCKNKRVEEASQLMDQMIMEG-LKPDKFTYNSLLTYFCRVGDIEKAGDIVQTM 534

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLD--------------------------------RM 137
           +S   +  +  + TL+      G++D                                R 
Sbjct: 535 ASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRT 594

Query: 138 KE---LF-QIMEKYVSPDACSYNILIHG-CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           KE   LF ++MEK   PDA ++ I+  G C     +++A     EM+++ + P   +FG 
Sbjct: 595 KEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPEFPSFGF 654

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYN-VKPDGQVF---ASLIKGLCAVGELSLALG 244
           L  GLC       +L +++ ++ + N V    Q+     S+I+G   + + + AL 
Sbjct: 655 LAEGLC-------SLSMEDTLIELINMVMEKAQMSERETSMIRGFLKIRKFNDALA 703


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 133/257 (51%), Gaps = 2/257 (0%)

Query: 88  NVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY 147
           NV+    + +  +     + E+       ++ FFN L++     G++   + +F  + K+
Sbjct: 106 NVLEHLMKXKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKW 165

Query: 148 -VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA 206
            + P   S+N L++G +    L++ +++ + M    +QP + T+  LI GLC E R+DEA
Sbjct: 166 GLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEA 225

Query: 207 LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266
             L  +++    + P+G  F +LI G C  G L LA+ +  +M+      D   Y++LI 
Sbjct: 226 NGLFGEMLD-NGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIY 284

Query: 267 ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326
            L K G   +   +L EM  +G KP+ +TY  LI G CKE D E AF + + M  +  + 
Sbjct: 285 GLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRL 344

Query: 327 NPISYNVILGGLCKDGK 343
           + + Y  ++ GLC++G+
Sbjct: 345 DDVVYTALIFGLCQEGR 361



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 132/244 (54%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y +   L+   ++ + M +  VQ  V  ++ L+N      ++D    L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++  + P+  ++  LI G   + RL+ A  ++ +M+ +   P +VT+ TLIYGLC 
Sbjct: 229 FGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L +++ R   +KPD   + +LI G C  G+L  A  ++E M+++ I +D  
Sbjct: 289 KGDLKQARYLLDEMSR-KGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           +Y++LI  L + GR  +   +L+EM   G KP+  TY  +++ FCK+ D + A  +L EM
Sbjct: 348 VYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREM 407

Query: 320 GDKG 323
              G
Sbjct: 408 QRNG 411



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/267 (31%), Positives = 130/267 (48%), Gaps = 9/267 (3%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ + ++ +V  FNTL+N  +  G LD 
Sbjct: 133 PASLYFFNILMHRFCKEGEMRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M    V PD  +Y++LI+G     R+++A  +F EM+   L P  VTF TLI 
Sbjct: 190 GFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   R+D A+ +   ++      PD   + +LI GLC  G+L  A  + +EM R  ++
Sbjct: 250 GHCKNGRLDLAMDIYRQMLN-QGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLK 308

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI    K G       + + M +   + + V Y ALI G C+E     A  +
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKM 368

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
           L EM   G K +  +Y +I+   CK G
Sbjct: 369 LREMLRVGLKPDDETYTMIMNEFCKKG 395



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 2/198 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           ++ A  +F EM    +      F TL++     G+LD   +++ Q++ +  SPD  +YN 
Sbjct: 222 MDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNT 281

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G      L+ A  + DEM ++ L+P  +T+ TLI G C E  ++ A +L+E +++  
Sbjct: 282 LIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIK-E 340

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           +++ D  V+ +LI GLC  G    A  +  EM+R  ++ D   Y+ +++   K G   + 
Sbjct: 341 SIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKA 400

Query: 278 PAILKEMKERGCKPNSVT 295
             +L+EM+  G  P  VT
Sbjct: 401 SELLREMQRNGRVPCVVT 418


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/251 (35%), Positives = 130/251 (51%), Gaps = 4/251 (1%)

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF--QIMEKYVSPD 151
            +  ++E A  ++ +M +  +Q ++  FNTL+N     GK+ R  EL   QI +  +SPD
Sbjct: 216 AKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKV-REAELILSQIFQYDLSPD 274

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +Y  LI G   +R L+ A+ VFD MVK    P  VT+ TLI GLC E RVDEAL + E
Sbjct: 275 VFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLE 334

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           +++    ++P    +   I  LCA+     A+ +   M +     +   Y++LIS L + 
Sbjct: 335 EMIE-KGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRL 393

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G+      +  +M + G  PN+VTYNALI+  C    F  A  I   M   G  AN  +Y
Sbjct: 394 GKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTY 453

Query: 332 NVILGGLCKDG 342
           N I+ GLC  G
Sbjct: 454 NEIIKGLCLGG 464



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 150/331 (45%), Gaps = 36/331 (10%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y+ +I +L     F    +I H ++    +   +  +  +I        +E+A+ +
Sbjct: 414 NTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQT-YNEIIKGLCLGGDIEKAMVL 472

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F++M       TV  +NTL+N  LT G ++    L  +M E    PD  +YN L+ G   
Sbjct: 473 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 532

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE------------- 211
             +LE A   F EMV+  L P  V++ TLI G   + +VD AL L E             
Sbjct: 533 WGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVES 592

Query: 212 ---------------------DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
                                D M    + P+   + +LI GLC  G    A  +  +M 
Sbjct: 593 YNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDME 652

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
           + K   +   YSSLI  L + G+ +E   +LKEM+ +G  P+ VT+ +LI GF      +
Sbjct: 653 KRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRID 712

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            AF +L  M D GCK N  +Y+V+L GL K+
Sbjct: 713 HAFLLLRRMVDVGCKPNYRTYSVLLKGLQKE 743



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 135/264 (51%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    +  +I    R   LE A+ ++ +M    +      +N L+N     G+     ++
Sbjct: 378 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKI 437

Query: 141 FQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F  ME + S  +  +YN +I G  +   +E A  +F++M+K    PT+VT+ TLI G   
Sbjct: 438 FHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLT 497

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  V+ A +L  D+M+    +PD   +  L+ G    G+L  A    +EMV   +  +  
Sbjct: 498 KGNVNNAARLL-DLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPV 556

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI    K G+ +   ++L+ M+E GC PN  +YNA+I+G  KE  F  A  I D+M
Sbjct: 557 SYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKM 616

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
            ++G   N I+Y  ++ GLC++G+
Sbjct: 617 AEQGLLPNVITYTTLIDGLCRNGR 640



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 131/277 (47%), Gaps = 2/277 (0%)

Query: 68  QILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127
            +L++L  D    P + I   +I        + R     +E+S      ++   NTLL  
Sbjct: 155 SMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQ 214

Query: 128 KLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
                 ++  + L+ Q++   + P   ++N LI+      ++ +A  +  ++ +  L P 
Sbjct: 215 LAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPD 274

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
           + T+ +LI G C    +D A  + + +++     P+   +++LI GLC  G +  AL + 
Sbjct: 275 VFTYTSLILGHCRNRNLDLAFGVFDRMVK-EGCDPNSVTYSTLINGLCNEGRVDEALDML 333

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           EEM+   IE     Y+  I+AL     + E   ++  MK+RGC+PN  TY ALISG  + 
Sbjct: 334 EEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRL 393

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              E A  +  +M  +G   N ++YN ++  LC  G+
Sbjct: 394 GKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGR 430



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 128/292 (43%), Gaps = 15/292 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           NL  Y  +I  L +    DE + +L +++    + P E+ F ++I GF    R+ + A  
Sbjct: 659 NLYTYSSLIYGLCQEGKADEAEILLKEMERKG-LAPDEVTFTSLIDGFVVLGRI-DHAFL 716

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           +   M     +   + ++ LL            KE   + EK        Y+   H   V
Sbjct: 717 LLRRMVDVGCKPNYRTYSVLLK--------GLQKECLLLEEKVAVQHEAVYSFSPHEKDV 768

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +   E    +   M +   +PTL T+ TL+ GLC + R  EA +L +D M+     PD +
Sbjct: 769 N--FEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKD-MKERGFCPDRE 825

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++ SL+   C   E+  AL +   +     ++   IY +LI AL KAG+  E  A+   M
Sbjct: 826 IYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNM 885

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
            E+    + + +  L+ G  KE + +    +L  M  K    N  +Y VILG
Sbjct: 886 LEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTY-VILG 936


>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hederifolia]
          Length = 431

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 138/273 (50%), Gaps = 39/273 (14%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G L+   R+K    ++   V PD  +Y++L
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKS--AMLASGVQPDVYTYSVL 218

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE------- 211
           I+G     +++DA ++FDEM+ + L P  VTF TLI G C   RVD A+++ +       
Sbjct: 219 INGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCL 278

Query: 212 ---------------------------DIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
                                      D M +  +KPD   + +LI G C  G+L  A  
Sbjct: 279 LPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGCCKEGDLDTAFE 338

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
            ++ M+++ I +D   Y++LIS L + GR  +   +L+EM   G KP+  TY  +I+ FC
Sbjct: 339 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDDRTYTMIINEFC 398

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           K+ D      +L EM   G   + ++YNV++ G
Sbjct: 399 KKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 128/239 (53%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   SYN L++G + 
Sbjct: 130 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L + +++   M+   +QP + T+  LI GLC E ++D+A +L ++ M V  + P+G 
Sbjct: 190 LGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDE-MLVKGLIPNGV 248

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEM 308

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G KP+  TY  LI G CKE D + AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 309 SMKGLKPDKFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGR 367



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 49/103 (47%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G      ++   + + G +P+ V+YN L+
Sbjct: 125 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D    F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 185 NGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 227


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 147/300 (49%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-IVPKEIIFCNVIGFYGRARLLERALQ 104
           + L Y  I+ +L + K  D+    + ++   TR I P   I+  V+    +   +E A  
Sbjct: 8   DALTYGPIVERLCKTKRIDDALATVEEMA--TRGIKPDAFIYNFVLSGLCQEEKVEEARL 65

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
           +F++M    +   V  +NTL+N      +++   ELF+ M  K   P   SYN LI G  
Sbjct: 66  LFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFC 125

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
             + L  A  VFD+MV+    P +VT+ TLI GL    +V  A ++ + +++   V P+ 
Sbjct: 126 KKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVK-KGVTPNV 184

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             ++ LI G C V  +  A  + E+MV   I      Y+ L+++L +A +  +   + + 
Sbjct: 185 ATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRG 244

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M +R C P  VTYN L+   C  +  + A  +  EM  KGC  + I+Y+ +  GL + GK
Sbjct: 245 MAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGK 304



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 134/260 (51%), Gaps = 2/260 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++    + + ++ AL   +EM++  ++     +N +L+      K++  + L
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ M K  ++P+  +YN LI+G   + R+E A+++F EM  +   PT V++ TLI G C 
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCK 126

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  +  A  + + ++R  N  P+   + +LI GL   G++  A  V + MV+  +  +  
Sbjct: 127 KKDLVAAKDVFDKMVRS-NCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVA 185

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YS LI    K  R +E   +L++M  +G  P  VTYN L++  C+ +  E AF +   M
Sbjct: 186 TYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGM 245

Query: 320 GDKGCKANPISYNVILGGLC 339
             + C    ++YN +L  LC
Sbjct: 246 AQRRCHPTVVTYNTLLRALC 265



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 1/163 (0%)

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           R   P  +T+G ++  LC   R+D+AL   E+ M    +KPD  ++  ++ GLC   ++ 
Sbjct: 3   RYAPPDALTYGPIVERLCKTKRIDDALATVEE-MATRGIKPDAFIYNFVLSGLCQEEKVE 61

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  + E+MV+ +I  +   Y++LI+ L KA R      + KEM  +G  P  V+YN LI
Sbjct: 62  EARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLI 121

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            GFCK++D  AA  + D+M    C  N ++Y  ++ GL K GK
Sbjct: 122 DGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGK 164



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 107/234 (45%), Gaps = 34/234 (14%)

Query: 144 MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
           M +Y  PDA +Y  ++     ++R++DA    +EM  R ++P    +  ++ GLC E +V
Sbjct: 1   MARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKV 60

Query: 204 DEALKLKEDIMR--------VYNV--------------------------KPDGQVFASL 229
           +EA  L E +++         YN                            P    + +L
Sbjct: 61  EEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTL 120

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           I G C   +L  A  V ++MVR     +   Y++LI  L K+G+      +L  M ++G 
Sbjct: 121 IDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGV 180

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            PN  TY+ LI GFCK    + A  +L++M  +G     ++YN++L  LC+  K
Sbjct: 181 TPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADK 234



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 133/280 (47%), Gaps = 5/280 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +++ L + +  +E + +  ++    RI P  + +  +I    +A  +E A ++F EM
Sbjct: 47  YNFVLSGLCQEEKVEEARLLFEKMVKQ-RINPNVVTYNTLINGLCKAWRIETAYELFKEM 105

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
           +      T   +NTL++       L   K++F +++     P+  +Y  LI G   S ++
Sbjct: 106 AGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKV 165

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A +V D MVK+ + P + T+  LI G C   RVDEA KL E  M    + P    +  
Sbjct: 166 QAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQ-MVTQGIAPTVVTYNI 224

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+  LC   +L  A  +   M + +       Y++L+ AL    + +    +  EM  +G
Sbjct: 225 LLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKG 284

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
           C P+++TY+ L  G  +      A  ++++M  K  K NP
Sbjct: 285 CPPDAITYDTLAWGLTRAGKVHEAQELMEKM--KLTKRNP 322



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 88/180 (48%), Gaps = 3/180 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L ++       ++L  +     + P    +  +I  + + R ++ A ++
Sbjct: 148 NVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKG-VTPNVATYSCLIDGFCKVRRVDEAHKL 206

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            ++M +  +  TV  +N LLN      KL+   +LF+ M ++   P   +YN L+     
Sbjct: 207 LEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCH 266

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            ++L+ A +++ EM+ +   P  +T+ TL +GL    +V EA +L E  M++    P G+
Sbjct: 267 HKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEK-MKLTKRNPFGR 325


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 170/374 (45%), Gaps = 48/374 (12%)

Query: 7   RLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEM 66
           RL    R Q DP+ AL++  +         A   + F  +   Y+ I+ KLG A  FD M
Sbjct: 58  RLLAALREQSDPEAALRMLNS---------ALAREDFAPSSAVYEEIVQKLGTAGAFDLM 108

Query: 67  QQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD---EMSSFNVQMTVKFFNT 123
           + ++ +++ +   V + ++  + +  Y R R  + A+ +     +  +F VQ     FN 
Sbjct: 109 EGLVREMRREGHQV-RAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNH 167

Query: 124 LLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR 182
           LLN  +   KL  ++ ++  M  + + PD  + N LI     + ++  A  + +EM    
Sbjct: 168 LLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHG 227

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIM----------------------RVYNV- 219
           + P   TF TL+ G   E  ++ AL++K  +M                      RV +  
Sbjct: 228 VAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDAL 287

Query: 220 -----------KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
                      +PD   + + + GLC  G +S AL V + M+++  + D   Y+++I+ L
Sbjct: 288 GYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCL 347

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K G  +E   I+ +M +RGC P++ T+N LI     +   E A  +  E+  KG   + 
Sbjct: 348 SKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDV 407

Query: 329 ISYNVILGGLCKDG 342
            ++N+++  LCK G
Sbjct: 408 YTFNILINALCKVG 421



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 150/333 (45%), Gaps = 38/333 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y+ +I  L +    DE + I++Q+  D   +P    F  +I        LE AL +
Sbjct: 336 DVFTYNTVINCLSKNGELDEAKGIVNQMV-DRGCLPDTTTFNTLIVALSSQNRLEEALDL 394

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI-HGCV 163
             E++   +   V  FN L+N     G       LF+ M+    +PD  +YNILI H C 
Sbjct: 395 ARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCS 454

Query: 164 VSR----------------------------------RLEDAWKVFDEMVKRRLQPTLVT 189
           + +                                  R+E+A +VFD+M  + +  + VT
Sbjct: 455 MGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVT 514

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           F TLI GLC   R+D+A +L E +++   ++P+   + S++   C  G +  A  + E M
Sbjct: 515 FNTLIDGLCKAKRIDDATELIEQMVK-EGLQPNNITYNSILTHYCKQGNIKKAADILETM 573

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
             +  E+D   Y +LI+ L KAGR      +L+ M+ +G +P    YN +I    +  + 
Sbjct: 574 TANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNL 633

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             A  +  EM + G   + ++Y ++   LC+ G
Sbjct: 634 RDALNLFREMTEVGEPPDALTYKIVFRSLCRGG 666



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 112/221 (50%), Gaps = 2/221 (0%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +NT ++     G +    ++  +M ++   PD  +YN +I+    +  L++A  + ++MV
Sbjct: 305 YNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMV 364

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
            R   P   TF TLI  L  + R++EAL L  ++  V  + PD   F  LI  LC VG+ 
Sbjct: 365 DRGCLPDTTTFNTLIVALSSQNRLEEALDLARELT-VKGLSPDVYTFNILINALCKVGDP 423

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
            L + + EEM       D   Y+ LI  L   G+      +L EM+  GC  ++VTYN +
Sbjct: 424 HLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTI 483

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           I   CK+   E A  + D+M  +G   + +++N ++ GLCK
Sbjct: 484 IDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCK 524



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 128/264 (48%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P ++ +   +    +   +  AL++ D M        V  +NT++N     G+LD  K +
Sbjct: 300 PDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGI 359

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
             Q++++   PD  ++N LI       RLE+A  +  E+  + L P + TF  LI  LC 
Sbjct: 360 VNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCK 419

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
                  ++L E+ M+     PD   +  LI  LC++G+L  AL +  EM  +       
Sbjct: 420 VGDPHLGIRLFEE-MKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTV 478

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+++I AL K  R  E   +  +M  +G   ++VT+N LI G CK +  + A  ++++M
Sbjct: 479 TYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQM 538

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             +G + N I+YN IL   CK G 
Sbjct: 539 VKEGLQPNNITYNSILTHYCKQGN 562



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 2/197 (1%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           +P +  Y  ++     +   +    +  EM +   Q   V   + +       R D+A+ 
Sbjct: 86  APSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSFVESYARLRRFDDAVD 145

Query: 209 LKEDIMR--VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266
           L  + +    + V+ D  VF  L+  L    +L L   V  EM    I+ D    ++LI 
Sbjct: 146 LVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIK 205

Query: 267 ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326
           AL +A +      +L+EM   G  P+  T+  L+ GF +E   EAA  +  +M + GC  
Sbjct: 206 ALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSP 265

Query: 327 NPISYNVILGGLCKDGK 343
             ++ NV++ G CK G+
Sbjct: 266 TGVTVNVLINGYCKMGR 282


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 131/259 (50%), Gaps = 1/259 (0%)

Query: 85  IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM 144
           I+  +I    +AR    AL++   M++     +V  + TL++     G LD  + L Q M
Sbjct: 12  IYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKM 71

Query: 145 -EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
            +   +P+  +Y  LI G   +RR  DA +    M++   +P LVT+ +LI+GLC+  R+
Sbjct: 72  ADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRM 131

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
           D+A  + +++M      PD   + + I GLC  G+L   L + EEM R  I  D   + S
Sbjct: 132 DDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCS 191

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +IS L KA R ++   + K M ERGC P+S+TY+ ++    +    +    +L+ M   G
Sbjct: 192 IISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSG 251

Query: 324 CKANPISYNVILGGLCKDG 342
             A   +Y  ++  L + G
Sbjct: 252 HYALSATYAPLIHALIRAG 270



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 147/329 (44%), Gaps = 14/329 (4%)

Query: 16  KDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 75
           + P+ AL+L      N  D           +++ Y  +I  L ++   D  Q +L ++  
Sbjct: 24  RKPRHALELLHVMAANGYDA----------SVVTYTTLIDGLCKSGDLDAAQALLQKMA- 72

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           D    P  + +  +I    +AR    A+Q    M     +  +  +N+L++      ++D
Sbjct: 73  DAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMD 132

Query: 136 RMKELFQ--IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
               + Q  ++E    PD  +YN  I G   + +L+   ++ +EM +  + P +VTF ++
Sbjct: 133 DAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSI 192

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I GLC   R+D+A ++ + ++    V PD   ++ ++  L     L     V E MV+  
Sbjct: 193 ISGLCKANRIDDAFQVFKGMLERGCV-PDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSG 251

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
               +  Y+ LI AL +AG         ++  E GC     T+NA I   C+   F  A 
Sbjct: 252 HYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAK 311

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDG 342
            IL  M + G   N +SYN ++ GLCK G
Sbjct: 312 NILLGMIESGSLPNLLSYNFVIDGLCKSG 340



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 144/303 (47%), Gaps = 8/303 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y+ +I  L  A   D+   +L +L  ++  +P  + +   I    +A  L++ L+M
Sbjct: 114 DLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEM 173

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
            +EM    +   V  F ++++      ++D   ++F+ ++E+   PD+ +Y+I++     
Sbjct: 174 LEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSR 233

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + RL+   +V + MVK        T+  LI+ L     ++ A    E  M    V    +
Sbjct: 234 ANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVM---E 290

Query: 225 VFA--SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
           V+   + I  LC  G+  LA  +   M+      +   Y+ +I  L K+G  ++   + +
Sbjct: 291 VYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSR 350

Query: 283 EMKERGC-KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG-CKANPISYNVILGGLCK 340
           +M + GC KP+ + +N LISGFCK      A  +L EM  K  C  + ++YN ++ G  K
Sbjct: 351 KMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSK 410

Query: 341 DGK 343
            G 
Sbjct: 411 FGS 413



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 2/167 (1%)

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M  R  +     + TLI GLC   +   AL+L   +M           + +LI GLC  G
Sbjct: 1   MASRHFRLDAAIYNTLIAGLCKARKPRHALELLH-VMAANGYDASVVTYTTLIDGLCKSG 59

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           +L  A  + ++M       +   Y++LI  L KA R ++    +K M   GC+P+ VTYN
Sbjct: 60  DLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYN 119

Query: 298 ALISGFCKEEDFEAAFTILDE-MGDKGCKANPISYNVILGGLCKDGK 343
           +LI G C     + A  +L E M + G   + ++YN  + GLCK GK
Sbjct: 120 SLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGK 166



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 122/311 (39%), Gaps = 73/311 (23%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+  I+ L +A   D+  ++L ++     I P  + FC++I    +A  ++ A Q+
Sbjct: 150 DVVTYNTFISGLCKAGKLDKGLEMLEEMDRGG-ISPDVVTFCSIISGLCKANRIDDAFQV 208

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHGCVV 164
           F  M           ++ +L+      +LD ++E+ + M K      + +Y  LIH  + 
Sbjct: 209 FKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIR 268

Query: 165 SRRLEDAWKVFDE-----------------------------------MVKRRLQPTLVT 189
           +  +E A   +++                                   M++    P L++
Sbjct: 269 AGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLS 328

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           +  +I GLC    VD+A KL   ++     KPD   F +LI G C  G LS A       
Sbjct: 329 YNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQA------- 381

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG-CKPNSVTYNALISGFCKEED 308
                                         +LKEMK +  C P+ VTYN +I G  K   
Sbjct: 382 ----------------------------QQLLKEMKAKNICVPDVVTYNTMIDGQSKFGS 413

Query: 309 FEAAFTILDEM 319
            + A  +L+EM
Sbjct: 414 LKQAKLLLEEM 424


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 163/362 (45%), Gaps = 48/362 (13%)

Query: 17  DPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD 76
           D  LAL L +  +           +  + ++  Y  II  L R    D    +  ++  +
Sbjct: 185 DTSLALDLLRKMDE----------RNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM--E 232

Query: 77  TRIVPKEIIFCN-VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           T+ +   ++  N ++G   +A      +Q+  +M+S  +   V  FN L++  +  GKL 
Sbjct: 233 TKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQ 292

Query: 136 RMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
              EL+ +++ K +SP+  +YN L+ G  +  RL +A  + D MV+    P +VTF +LI
Sbjct: 293 EANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLI 352

Query: 195 YGLCLELRVDEALKLKEDI----------------------------------MRVYNVK 220
            G C   RVDE +KL   I                                  M    V 
Sbjct: 353 KGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVL 412

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   +  L+ GLC  G+L  AL + E++ + K+ +D  +Y+ +I  + K G+  +   +
Sbjct: 413 PDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNL 472

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
              +  +G KPN +TY  +ISG CK+     A  +L +M + G + N  +YN ++    +
Sbjct: 473 FCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLR 532

Query: 341 DG 342
           DG
Sbjct: 533 DG 534



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 148/300 (49%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEII-FCNVIGFYGRARLLERALQ 104
           N++ Y+ I+   G  K  D    +    K D R V  ++  +  +I    R   ++ A+ 
Sbjct: 169 NVVTYNSIVN--GICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAIS 226

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
           +F EM +  ++ ++  +N+L+      GK +   +L + M  + + P+  ++N+LI   V
Sbjct: 227 LFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFV 286

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              +L++A +++ EM+ + + P  +T+ +L+ G C++ R+ EA  +  D+M   N  PD 
Sbjct: 287 KEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNML-DLMVRNNCSPDI 345

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             F SLIKG C V  +   + +  ++ +  +  +   YS L+    ++G+      + +E
Sbjct: 346 VTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQE 405

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M   G  P+ +TY  L+ G C     E A  I +++       + + Y +I+ G+CK GK
Sbjct: 406 MVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGK 465



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 132/264 (50%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + + +++    ++     AL +  +M   NV+  V  ++T+++     G +D    L
Sbjct: 168 PNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISL 227

Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ ME K +     +YN L+ G   + +  D  ++  +M  R++ P ++TF  LI     
Sbjct: 228 FKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVK 287

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E ++ EA +L ++ M    + P+   + SL+ G C    LS A  + + MVR+    D  
Sbjct: 288 EGKLQEANELYKE-MITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIV 346

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            ++SLI    K  R +E   + +++ +RG   N+VTY+ L+ GFC+    E A  +  EM
Sbjct: 347 TFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEM 406

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
              G   + ++Y ++L GLC +GK
Sbjct: 407 VSLGVLPDVMTYGILLDGLCDNGK 430



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 105/200 (52%), Gaps = 1/200 (0%)

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L ++M+    PD  ++N LI+G  +  ++ +A  +   MV+   QP +VT+ +++ G+C 
Sbjct: 123 LGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICK 182

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
                 AL L    M   NVK D   ++++I  LC  G +  A+ + +EM    I+    
Sbjct: 183 SGDTSLALDLLRK-MDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLV 241

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+SL+  L KAG+ N+   +LK+M  R   PN +T+N LI  F KE   + A  +  EM
Sbjct: 242 TYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEM 301

Query: 320 GDKGCKANPISYNVILGGLC 339
             KG   N I+YN ++ G C
Sbjct: 302 ITKGISPNTITYNSLMDGYC 321



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 107/230 (46%), Gaps = 34/230 (14%)

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC------LEL 201
           +S     Y   +   +V  + +DA  +F EM++ R  P+LV F     G+       L L
Sbjct: 26  ISDGRVCYGERLRSGIVDIKEDDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVL 85

Query: 202 RVDEALKLKEDIMRVYNV----------------------------KPDGQVFASLIKGL 233
              + ++L      +Y +                            +PD   F +LI GL
Sbjct: 86  DFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGL 145

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           C   ++S A+ +   MV +  + +   Y+S+++ + K+G  +    +L++M ER  K + 
Sbjct: 146 CLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADV 205

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            TY+ +I   C++   +AA ++  EM  KG K++ ++YN ++GGLCK GK
Sbjct: 206 FTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGK 255


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 152/304 (50%), Gaps = 4/304 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR--IVPKEIIFCNVIGFYGRARLLE 100
           +R NLL  + ++  L R      +      LK   +  +VP    F  +I  Y     ++
Sbjct: 171 YRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVK 230

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
            AL   ++MS F        +NT+L+  L    L   ++L   M+ K +SP+  +YN+L+
Sbjct: 231 DALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLV 290

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G      L++A KV + M +  L PT+ T+  L+ G C + ++DEA ++++++ ++ NV
Sbjct: 291 CGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKM-NV 349

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   + +LI G     + S    + EEM +  ++ +A  Y+ ++  + K G   E   
Sbjct: 350 LPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATT 409

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
            L +M+E G  P+ VTYN LI  +CK      AF ++DEM  KG K +  + N IL  LC
Sbjct: 410 TLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLC 469

Query: 340 KDGK 343
            + K
Sbjct: 470 VEKK 473



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 149/306 (48%), Gaps = 7/306 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + N + Y++I+  + +     E    L +++ +  + P  + +  +IG Y +A  + 
Sbjct: 382 KGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENG-LSPDCVTYNTLIGAYCKAGKMG 440

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYNIL 158
           +A +M DEM+S  +++     NT+L+      KLD    L     K  Y+  D  SY IL
Sbjct: 441 KAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYI-LDEVSYGIL 499

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL-KLKEDIMRVY 217
           I G     + + A  ++DEM +R++ P+ +T+ ++I GLC   +VD+A+ KL E  M   
Sbjct: 500 ILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNE--MLEN 557

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + PD   +  +I G C  G +  A     EM+ +  + D    + L+  L + G   + 
Sbjct: 558 GLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKA 617

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +   +  +G   + VTYN +IS  CKE  FE A+ +L EM  K    +  +Y VI+  
Sbjct: 618 LKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAA 677

Query: 338 LCKDGK 343
           L   G+
Sbjct: 678 LTDAGR 683



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 148/297 (49%), Gaps = 3/297 (1%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           + Y+ I+  L + ++  E + +L  +K    + P +  +  ++  Y R  LL+ A ++ +
Sbjct: 249 VSYNTILDALLKRRLLQEARDLLLDMK-SKGLSPNKHTYNMLVCGYCRLGLLKEATKVIE 307

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSR 166
            M+  N+  TV  +N L+N     GK+D    +   MEK  V PD  +YN LI GC   R
Sbjct: 308 IMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWR 367

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
              + + + +EM K+ ++   VT+  ++  +C +  + EA     D M    + PD   +
Sbjct: 368 DSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATT-TLDKMEENGLSPDCVTY 426

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
            +LI   C  G++  A  + +EM    +++D    ++++  L    + +E   +L    +
Sbjct: 427 NTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASK 486

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           RG   + V+Y  LI G+ K+E  + A  + DEM ++    + I+YN ++GGLC+  K
Sbjct: 487 RGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRK 543



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 141/284 (49%), Gaps = 10/284 (3%)

Query: 67  QQILHQL-KHDTRIVP---KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
           Q  LH+L  H TR +P   KE++  + IG Y +      A Q+F++M   N +  +   N
Sbjct: 121 QHELHKLILHPTRDLPEPSKELLDTS-IGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCN 179

Query: 123 TLLNPKLTCGKLDRMKELFQIMEKY----VSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
           TL+N  +       +    Q+++      V P+  S+NILI+G  +  +++DA    ++M
Sbjct: 180 TLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKM 239

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
            +    P  V++ T++  L     + EA  L  D M+   + P+   +  L+ G C +G 
Sbjct: 240 SEFGCVPDTVSYNTILDALLKRRLLQEARDLLLD-MKSKGLSPNKHTYNMLVCGYCRLGL 298

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           L  A  V E M R+ +      Y+ L++     G+ +E   I  EM++    P+ VTYN 
Sbjct: 299 LKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNT 358

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           LI G  +  D    +++++EM  KG K N ++YN+IL  +CK G
Sbjct: 359 LIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKG 402



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 130/279 (46%), Gaps = 26/279 (9%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKY 147
           ++G++   +  +RAL ++DEM    +  +   +N+++       K+D+ + +L +++E  
Sbjct: 500 ILGYFKDEKG-DRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENG 558

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + PD  +YNI+IHG  +   +E A++  +EM++   +P + T   L+ GLC E  +++AL
Sbjct: 559 LVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKAL 618

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           KL   ++       D   + ++I  LC  G+   A  +  EM   K+  D   Y  +I+A
Sbjct: 619 KLFNTLVS-KGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAA 677

Query: 268 LFKAGRKNEFPAILKEMKERGCKPN-----------------------SVTYNALISGFC 304
           L  AGR  E      +M E G   +                       S+ Y+  I+  C
Sbjct: 678 LTDAGRIKEAEEFTLKMVESGIVHDQNLKLGKGQNVLTSEVSEHFDFKSIAYSDQINELC 737

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +  ++ A  +  E+  +G   N  +Y  ++ GL K  K
Sbjct: 738 NQHKYKDAMHLFVEVTKEGVALNKYTYLNLMEGLIKRRK 776


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 146/301 (48%), Gaps = 5/301 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+  I+ L +A   D+  ++L ++     I P  + FC++I    +A  ++ A Q+
Sbjct: 186 DVVTYNTFISGLCKAGKLDKGLEMLEEMDRGG-IPPDVVTFCSIISGLCKANRIDDAFQV 244

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF---QIMEKYVSPDACSYNILIHGC 162
           F  M           ++ +L+      +LD + E+    Q M+     +  ++N  I   
Sbjct: 245 FKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGAL 304

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             S +   A  +   M++    P L+++  +I GLC    VD+A KL   ++     KPD
Sbjct: 305 CRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPD 364

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM-DAGIYSSLISALFKAGRKNEFPAIL 281
              F +LI G C  G LS A  +  EM    I + D   Y++LI    K G   +   +L
Sbjct: 365 VIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLL 424

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           +EM+  GCKPN VTY ALI+G+ K   +E A ++ DEM  KGC  + I+YN +L    K 
Sbjct: 425 QEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKA 484

Query: 342 G 342
           G
Sbjct: 485 G 485



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 38/247 (15%)

Query: 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           D ++ + +++     PD  +YN LIHG  ++ R++DA  V  E+V+    P  +T+ TL+
Sbjct: 63  DAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLV 122

Query: 195 YGLCLELRVDEALKL-KEDIMR--VYNVK------------------------------- 220
              C   R+D+A  L +E I+R  V N+                                
Sbjct: 123 IWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIESG 182

Query: 221 --PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
             PD   + + I GLC  G+L   L + EEM R  I  D   + S+IS L KA R ++  
Sbjct: 183 RIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAF 242

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG--DKGCKANPISYNVILG 336
            + K M ERGC P+S+TY+ ++    +    +    +L+ M     GC     ++N  +G
Sbjct: 243 QVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIG 302

Query: 337 GLCKDGK 343
            LC+ GK
Sbjct: 303 ALCRSGK 309



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 143/327 (43%), Gaps = 42/327 (12%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           II+ L +A   D+  Q+   +  +   VP  + +  ++    RA  L+   ++ + M + 
Sbjct: 228 IISGLCKANRIDDAFQVFKGML-ERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAM 286

Query: 113 NVQ--MTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
                M V   N  +      GK    K  L  ++E    P+  SYN +I G   S  ++
Sbjct: 287 KAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVD 346

Query: 170 DAWKVFDEMVKRRL-QPTLVTFGTLIYGLCLELRVDEALKLKEDI---------MRVYNV 219
           DAWK+  +M+     +P ++ F TLI G C   R+ +A +L  ++         +  YN 
Sbjct: 347 DAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNT 406

Query: 220 KPDGQ--------------------------VFASLIKGLCAVGELSLALGVKEEMVRDK 253
             DGQ                           +A+LI G    G    A  + +EM    
Sbjct: 407 LIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKG 466

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG--CKPNSVTYNALISGFCKEEDFEA 311
              D   Y++++SA  KAG  ++   + +++K +   C P+++TY  LI G+C+ ED E 
Sbjct: 467 CFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQ 526

Query: 312 AFTILDEMGDKGCKANPISYNVILGGL 338
             T+L EM  +G   +  +YNV++  L
Sbjct: 527 GLTLLQEMTARGWSCDSYTYNVLIAKL 553



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 148/305 (48%), Gaps = 10/305 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y+ +I  L  A   D+   +L +L  +    P  I +  ++ +  R R L++A  +
Sbjct: 79  DLVTYNSLIHGLCMANRMDDAGLVLQELVRNG-FAPNHITYSTLVIWNCRRRRLDQARGL 137

Query: 106 FDEM----SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161
             EM    S  N+ + +         +    + +  ++  +++E    PD  +YN  I G
Sbjct: 138 IREMILRGSVCNLVVYIDCIFGFCEARCQSSRYE-CRDGDEMIESGRIPDVVTYNTFISG 196

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              + +L+   ++ +EM +  + P +VTF ++I GLC   R+D+A ++ + ++    V P
Sbjct: 197 LCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCV-P 255

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEM--VRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           D   ++ ++  L     L     V E M  ++    M+   +++ I AL ++G+      
Sbjct: 256 DSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKN 315

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC-KANPISYNVILGGL 338
           IL  M E G  PN ++YN +I G CK  + + A+ +  +M D GC K + I +N ++ G 
Sbjct: 316 ILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGF 375

Query: 339 CKDGK 343
           CK G+
Sbjct: 376 CKAGR 380



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 135/285 (47%), Gaps = 10/285 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NLL Y+ +I  L ++   D+  ++  ++       P  I F  +I  + +A  L +A Q+
Sbjct: 328 NLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQL 387

Query: 106 FDEMSSFNVQM-TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV 163
             EM + N+ +  V  +NTL++ +   G L + K L Q M+     P+  +Y  LI+G  
Sbjct: 388 LIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYA 447

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM-RVYNVKPD 222
                E+A  +FDEM  +   P ++T+ T++        + +A  + + +  +     PD
Sbjct: 448 KHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPD 507

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP---- 278
              +  LI G C   +    L + +EM       D+  Y+ LI+ L       E P    
Sbjct: 508 AITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLIAKL---AETEEVPSKAL 564

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           A+ ++M ++ C P++  +N+L+  F +  D  +A +++ EM +KG
Sbjct: 565 AVYQQMLDQDCVPSASIFNSLVRLFLRTGDVNSARSMVQEMNEKG 609



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 60/116 (51%)

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI GLC  G+L  A  + ++M       +   Y++LI  L KA R ++    +K M
Sbjct: 12  TYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRM 71

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
              GC+P+ VTYN+LI G C     + A  +L E+   G   N I+Y+ ++   C+
Sbjct: 72  LRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIWNCR 127



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 32/57 (56%)

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           M   G   + VTY  LI G CK  D +AA  +L +M D GC  N ++Y  ++ GLCK
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCK 57


>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           micromera]
          Length = 431

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 133/271 (49%), Gaps = 35/271 (12%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIH 160
           A  +FD ++ + ++ +V  +NTL+N  +  G LD    L   M    V PD  +Y++LI+
Sbjct: 161 AXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLIN 220

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR----- 215
           G     +++DA ++FDEM+ + L P  VTF TLI G C   RVD A+++ + ++      
Sbjct: 221 GLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP 280

Query: 216 ---VYN--------------------------VKPDGQVFASLIKGLCAVGELSLALGVK 246
               YN                          +KPD   + +LI G C  G L  A   +
Sbjct: 281 DLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGNLBTAFEHR 340

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
             M+ + I +D   Y++LIS L + GR  +   +L+ M   G KP++ TY  +I+ FCK+
Sbjct: 341 XRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTYTMIINEFCKK 400

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            D      +L EM   G   + ++YNV++ G
Sbjct: 401 GDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 123/228 (53%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G +     +F  + K+ + P   SYN L++G +    L++ +++ 
Sbjct: 141 SLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 200

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
             M    +QP + T+  LI GLC E ++D+A +L ++ M V  + P+   F +LI G C 
Sbjct: 201 SAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFDE-MLVKGLVPNXVTFTTLIDGHCK 259

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y+ LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 260 NGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKIT 319

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE + + AF     M ++  + + ++Y  ++ GLC++G+
Sbjct: 320 YTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGR 367



 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  +E++          ++ L+    K G      ++   + + G +P+ V+YN L+
Sbjct: 125 LVWGFYKEILECGYPXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLM 184

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 185 NGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLINGLCKEXK 227


>gi|356495305|ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
           mitochondrial-like [Glycine max]
          Length = 618

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 154/330 (46%), Gaps = 17/330 (5%)

Query: 15  QKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 74
           QK    AL+ F+  +  PN         F ++   Y  +I KL   + FD ++Q+L ++ 
Sbjct: 46  QKSASEALEYFRWASTVPN---------FVHSQSTYRALIHKLCTFRRFDTVKQLLDEMP 96

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           H     P + IF  +I   GRAR+    +++ D +  F+   ++K FN++L+  L    +
Sbjct: 97  HSLGAPPGDDIFITIIRGLGRARMTRTVIKVLDLVYKFHGSPSLKIFNSILDV-LVKEDI 155

Query: 135 DRMKELFQ--IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           D  +E ++  +M   V  D  ++ IL+ G  ++ R+ + +K+   +  R + P  V + T
Sbjct: 156 DMAREFYRKSMMASGVEGDDYTFGILMKGLCLTNRIGEGFKLLQLIKSRGVAPNTVVYNT 215

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           L++ LC   +V  A  L  ++       P+   F  LI G C  G    AL + E+    
Sbjct: 216 LLHALCRNGKVGRARNLMNEME-----DPNDVTFNILISGYCKEGNSVQALVLLEKSFSM 270

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
               D    + ++  L  AGR  E   +L+ ++  G   + V YN LI GFC     +  
Sbjct: 271 GFVPDVVSVTKVLEILCNAGRTMEAAEVLERVESMGGLLDVVAYNTLIKGFCGAGKVKVG 330

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDG 342
              L +M +KGC  N  +YNV++ G  + G
Sbjct: 331 LHFLKQMENKGCLPNVDTYNVLISGFSESG 360



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 130/294 (44%), Gaps = 44/294 (14%)

Query: 85  IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM 144
           I CN        R +E A ++ + + S    + V  +NTL+      GK+       + M
Sbjct: 285 ILCNA------GRTMEAA-EVLERVESMGGLLDVVAYNTLIKGFCGAGKVKVGLHFLKQM 337

Query: 145 E-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
           E K   P+  +YN+LI G   S  L+ A  +F++M    ++   VTF TLI GLC E R+
Sbjct: 338 ENKGCLPNVDTYNVLISGFSESGMLDLALDLFNDMKTDGIKWNFVTFDTLIRGLCSEERI 397

Query: 204 DEALKLKEDIMRVYNVKPDGQV--FASLIKGL---------------------------- 233
           ++   + E +M        G +  + S+I GL                            
Sbjct: 398 EDGFSILE-LMEESKEGSRGHISPYNSIIYGLLKKNGFDESAEFLTKMGNLFPRAVDRSL 456

Query: 234 -----CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
                C  G +  A  V ++M+ +       +Y+ L+    K G   E   ++ EM    
Sbjct: 457 MILEHCKKGAIEDAKRVYDQMIDEGGIPSILVYNCLVHGFSKQGNVREAVELMNEMIANN 516

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           C P   T+NA+I+GFC++   E+A  +++++  +GC  N  +Y+ ++  LC++G
Sbjct: 517 CFPIPSTFNAVITGFCRQGKVESALKLVEDITARGCVPNTETYSPLIDVLCRNG 570



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 110/245 (44%), Gaps = 8/245 (3%)

Query: 102 ALQMFDEMSSF-NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PDACSYNIL 158
           AL+ F   S+  N   +   +  L++   T  + D +K+L   M   +   P    +  +
Sbjct: 52  ALEYFRWASTVPNFVHSQSTYRALIHKLCTFRRFDTVKQLLDEMPHSLGAPPGDDIFITI 111

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   +R      KV D + K    P+L  F +++  L  E  +D A +     M    
Sbjct: 112 IRGLGRARMTRTVIKVLDLVYKFHGSPSLKIFNSILDVLVKE-DIDMAREFYRKSMMASG 170

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V+ D   F  L+KGLC    +     + + +    +  +  +Y++L+ AL + G+     
Sbjct: 171 VEGDDYTFGILMKGLCLTNRIGEGFKLLQLIKSRGVAPNTVVYNTLLHALCRNGKVGRAR 230

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            ++ EM++    PN VT+N LISG+CKE +   A  +L++    G   + +S   +L  L
Sbjct: 231 NLMNEMED----PNDVTFNILISGYCKEGNSVQALVLLEKSFSMGFVPDVVSVTKVLEIL 286

Query: 339 CKDGK 343
           C  G+
Sbjct: 287 CNAGR 291



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 133/281 (47%), Gaps = 16/281 (5%)

Query: 70  LHQLKH--DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127
           LH LK   +   +P    +  +I  +  + +L+ AL +F++M +  ++     F+TL+  
Sbjct: 331 LHFLKQMENKGCLPNVDTYNVLISGFSESGMLDLALDLFNDMKTDGIKWNFVTFDTLIRG 390

Query: 128 KLTCGKLDRMKELFQIMEK-------YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
             +  +++    + ++ME+       ++SP    YN +I+G +     +++ +   +M  
Sbjct: 391 LCSEERIEDGFSILELMEESKEGSRGHISP----YNSIIYGLLKKNGFDESAEFLTKM-- 444

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
             L P  V    +I   C +  +++A ++ + ++    + P   V+  L+ G    G + 
Sbjct: 445 GNLFPRAVDRSLMILEHCKKGAIEDAKRVYDQMIDEGGI-PSILVYNCLVHGFSKQGNVR 503

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A+ +  EM+ +        ++++I+   + G+      +++++  RGC PN+ TY+ LI
Sbjct: 504 EAVELMNEMIANNCFPIPSTFNAVITGFCRQGKVESALKLVEDITARGCVPNTETYSPLI 563

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
              C+  D + A  +  +M DKG   +   +N +L  L ++
Sbjct: 564 DVLCRNGDLQKAMQVFMQMVDKGILPDLFIWNSLLLSLSQE 604


>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           herrerae]
          Length = 395

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 132/240 (55%), Gaps = 2/240 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y R   L+   ++ + M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 156 PSVVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEL 215

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++K + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TL YGLC 
Sbjct: 216 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCK 275

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G++  A   ++ M+++ I +D  
Sbjct: 276 KGDLKQAHDLIDE-MSMKGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDV 334

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           +Y++LIS L + GR  +   +L+EM   G KPN  TY  +I+ FCK+ D      +L EM
Sbjct: 335 VYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXGTYTMIINEFCKKGDVWTGSKLLKEM 394



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 135/264 (51%), Gaps = 3/264 (1%)

Query: 81  PKEIIFCNVIGF-YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F N++   + +   +  A  +FD ++ + ++ +V  FNTL+N  +  G LD    
Sbjct: 120 PASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 179

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L   M    V PD  +Y++LI+G     +++DA ++FDEM+ + L P  VTF TLI G C
Sbjct: 180 LKNAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHC 239

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              RVD A+++ + ++   ++ PD   + +L  GLC  G+L  A  + +EM    ++ D 
Sbjct: 240 KNGRVDLAMEIYKQMLS-QSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDK 298

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y++LI    K G         K M +   + + V Y ALISG C+E     A  +L E
Sbjct: 299 ITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLRE 358

Query: 319 MGDKGCKANPISYNVILGGLCKDG 342
           M   G K N  +Y +I+   CK G
Sbjct: 359 MLSVGLKPNXGTYTMIINEFCKKG 382



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 124/228 (54%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G +   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 122 SLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLK 181

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E ++D+A +L ++++    + P+G  F +LI G C 
Sbjct: 182 NAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDK-GLVPNGVTFTTLIDGHCK 240

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++L   L K G   +   ++ EM  +G KP+ +T
Sbjct: 241 NGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKIT 300

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + + Y  ++ GLC++G+
Sbjct: 301 YTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGR 348



 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 51/103 (49%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  +E++          ++ L+    K G      ++   + + G +P+ V++N L+
Sbjct: 106 LVWGFYKEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLM 165

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 166 NGYIRLGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESK 208


>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 418

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 135/251 (53%), Gaps = 2/251 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y +   L+   ++ + M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++  + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 289 KGDLKQAQDLIDE-MSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP   TY  +I+ FCK+ D      +L EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407

Query: 320 GDKGCKANPIS 330
              GC  + ++
Sbjct: 408 QRDGCMPSVVT 418



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 128/228 (56%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++  +  G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E ++D+A +L ++++    + P+G  F +LI G C 
Sbjct: 195 NAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD-NGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 254 NGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGR 361



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 87/267 (32%), Positives = 136/267 (50%), Gaps = 9/267 (3%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ ++++ +V  FNTL+N  +  G LD 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M+   V PD  +Y++LI+G     +++DA ++FDEM+   L P  VTF TLI 
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   RVD A+++ + ++   ++ PD   + +LI GLC  G+L  A  + +EM    ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI    K G         K M +   + + V Y ALISG C+E     A  +
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
           L EM   G K    +Y +I+   CK G
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE +          ++ L+ +  K G      ++   + +   +P+ V++N L+
Sbjct: 119 LVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ K  D +  F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 136/264 (51%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    F  +I  Y +   +E+A +++ EM+   +  +V  F  L+    +  ++    +L
Sbjct: 461 PTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKL 520

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++E+ + P   +YN++I G   +  ++ A+++ ++M+   L P   T+  LI GLC 
Sbjct: 521 FDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCS 580

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             RV  A    +D+ +  N+K +   +++L+ G C  G L+ AL    EM++  I MD  
Sbjct: 581 TGRVSAAKDFIDDLHK-KNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLV 639

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            ++ LI    K         +LK+M ++G +P+SV Y ++I  + KE  F+ +   LD M
Sbjct: 640 CHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLM 699

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             + C  N ++Y   + GLCK G+
Sbjct: 700 VTEKCFPNVVTYTAFMNGLCKVGE 723



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 119/265 (44%), Gaps = 37/265 (13%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           +P   ++  +I    +   L++A  ++  M S N+ +    ++ L++     G LD  + 
Sbjct: 355 LPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAES 414

Query: 140 LF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            F +++E  +      YN LI+G      L  A  ++ +M+   L+PT  TF TLI G C
Sbjct: 415 YFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYC 474

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
            +L+V++A KL  + M    + P    F +LI GLC+  E++                  
Sbjct: 475 KDLQVEKAFKLYRE-MNEKEIAPSVYTFTALIYGLCSTNEMA------------------ 515

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
                            E   +  EM ER  KP  VTYN +I G+CK  + + AF +L++
Sbjct: 516 -----------------EASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLED 558

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M   G   +  +Y  ++ GLC  G+
Sbjct: 559 MLHNGLVPDTYTYRPLISGLCSTGR 583



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 119/256 (46%), Gaps = 10/256 (3%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY--- 147
           G+ G+ RL E AL    EM    + M +     L++  +   K   MK LF +++K    
Sbjct: 612 GYCGQGRLTE-ALSASCEMIQRGINMDLVCHAVLIDGAM---KQQDMKRLFGLLKKMYDQ 667

Query: 148 -VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA 206
            + PD+  Y  +I         + + +  D MV  +  P +VT+   + GLC    +D A
Sbjct: 668 GLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRA 727

Query: 207 LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266
             L E ++   N+ P+   +   +  L   G +  A  +  EM++  +  +   Y+ LI 
Sbjct: 728 GHLFEKMLTA-NISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLKGLLA-NTATYNILIR 785

Query: 267 ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326
              K GR  E   +L EM E G  P+ +TY+ +I   C+  D  AA  + D M  KG + 
Sbjct: 786 GFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTMLRKGVEP 845

Query: 327 NPISYNVILGGLCKDG 342
           + +++N+++ G C +G
Sbjct: 846 DSVAFNLLIYGCCVNG 861



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 143/343 (41%), Gaps = 27/343 (7%)

Query: 17  DPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL--- 73
           D KLAL+ F     + N           +    + +++  L + K+F     +LH L   
Sbjct: 75  DSKLALRFFNFLGLHKN---------MNHTTTSFAILVHALVQNKLFWPANSLLHTLLLR 125

Query: 74  KHDTRIV-------PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQM------TVKF 120
             D + V        K+  F + +GF        +  ++FD +    + +       V+ 
Sbjct: 126 GSDPKFVFEKFLESHKQCKFSSTLGFDFLVHSYLQNTRVFDAVVVLRLMLGNTLLPEVRT 185

Query: 121 FNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
            + +LN  L   K   + E+F + +   V PD  + + +I      +    A +    M 
Sbjct: 186 LSAILNGLLRIRKFILVWEVFDESVNAGVKPDPYTCSAVIRSLCELKDFCRAKEKILWME 245

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
             R   ++VT+  LI+GLC    V EAL++++  +R   +K D   + +L+ G C V + 
Sbjct: 246 SNRFDLSIVTYNVLIHGLCKGGGVLEALEVRKS-LREKGLKEDVVTYCTLVLGFCRVQQF 304

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
              + +  EMV           S L+  L K G  +    ++ ++   G  PN   YNAL
Sbjct: 305 DDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNAL 364

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           I+  CK ED + A  +   M       N ++Y++++   CK G
Sbjct: 365 INALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRG 407



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 2/180 (1%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P+  +Y   ++G      ++ A  +F++M+   + P  VT+G  +  L  E  + EA  L
Sbjct: 706 PNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDL 765

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
             ++++   +  +   +  LI+G C +G L  A  V  EM  + I  D   YS++I    
Sbjct: 766 HHEMLK--GLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHC 823

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           ++G       +   M  +G +P+SV +N LI G C     + AF + ++M  +G K   I
Sbjct: 824 RSGDVGAAVELWDTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPRQI 883



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 77/154 (50%), Gaps = 11/154 (7%)

Query: 121 FNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +N L+      G+L +  K L ++ E  + PD  +Y+ +I+    S  +  A +++D M+
Sbjct: 780 YNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTML 839

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP---------DGQVFASLI 230
           ++ ++P  V F  LIYG C+   +D+A +L+ D++    +KP         D  V   L+
Sbjct: 840 RKGVEPDSVAFNLLIYGCCVNGALDKAFELRNDMLS-RGLKPRQILQLQKRDLGVCNFLM 898

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
            G C  GE+  AL +   M+   +++   ++  L
Sbjct: 899 HGGCVTGEVDTALRLYHSMLTRAVKLSLEMWKCL 932


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 134/279 (48%), Gaps = 3/279 (1%)

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
            D+     H++ H     P    F  ++    + +     L +  +M SF +   V    
Sbjct: 37  LDDALSSFHRMLH-MHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLT 95

Query: 123 TLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
            ++N      ++D  +  L +I++    PD  ++  L+ G  V  ++ +A  VFD+MV  
Sbjct: 96  IVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGE 155

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
             QP +VT+GTL+ GLC + ++ EAL L  + M    + PD   + SLI  LC + E   
Sbjct: 156 GFQPNVVTYGTLMNGLCKDRQLTEALNLFSE-MIAKGISPDIFTYNSLIHALCNLCEWKH 214

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
              +  EMV+ KI  +    + ++ AL K G+  E   ++  M + G +P+ VTY AL+ 
Sbjct: 215 VTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMD 274

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           G C   + + A  + D M   GC  N +SYN ++ G CK
Sbjct: 275 GHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCK 313



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 123/245 (50%), Gaps = 2/245 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
           ++ A+++FD M        V  +NTL+N      ++D+   LF+ M  + + P+  +Y+ 
Sbjct: 282 MDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYST 341

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LIHG     RL+DA  +F+EMV     P LVT+  L+  LC   R+ EA+ L + I    
Sbjct: 342 LIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAI-EGS 400

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N+ PD QV+   I G+C  G+L  A  +   +    ++ D   ++ +I  L K G  +E 
Sbjct: 401 NLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEA 460

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + +EM E GC  N  TYN +  G  +      A  +L+EM  +G  A+  +  +++  
Sbjct: 461 SKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKM 520

Query: 338 LCKDG 342
           L  DG
Sbjct: 521 LSDDG 525



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 126/244 (51%), Gaps = 2/244 (0%)

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
            AL +FD+M     Q  V  + TL+N      +L     LF +++ K +SPD  +YN LI
Sbjct: 144 EALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLI 203

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           H        +    + +EMVK ++ P +V+   ++  LC E +V EA  +  D+M    V
Sbjct: 204 HALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVV-DMMIQGGV 262

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +PD   +A+L+ G C   E+  A+ V + MVR+    +   Y++LI+   K  R ++   
Sbjct: 263 EPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMY 322

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + +EM  +   PN++TY+ LI G C     + A  + +EM   G   N ++Y+++L  LC
Sbjct: 323 LFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLC 382

Query: 340 KDGK 343
           K+ +
Sbjct: 383 KNHR 386



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 144/337 (42%), Gaps = 38/337 (11%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ N++ Y  ++  L + +   E   +  ++     I P    + ++I         +  
Sbjct: 157 FQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKG-ISPDIFTYNSLIHALCNLCEWKHV 215

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG 161
             + +EM    +   V   N +++     GK+    ++  +M +  V PD  +Y  L+ G
Sbjct: 216 TTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDG 275

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
             +   +++A KVFD MV+      +V++ TLI G C   R+D+A+ L E++ R   + P
Sbjct: 276 HCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCR-QELIP 334

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVR------------------------------ 251
           +   +++LI GLC VG L  A+ +  EMV                               
Sbjct: 335 NTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALL 394

Query: 252 -----DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
                  ++ D  +Y+  I  + +AG       +   +  RG +P+  T+N +I G CK 
Sbjct: 395 KAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKR 454

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              + A  +  EM + GC  N  +YN I  GL ++ K
Sbjct: 455 GLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNK 491



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 110/238 (46%), Gaps = 10/238 (4%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
           F   S  N Q     FNTL          D +    +++  +  P    +  L+      
Sbjct: 19  FLSSSQNNFQSKSLHFNTLD---------DALSSFHRMLHMHPPPPIFEFAKLLTSIAKM 69

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
           +       +  +M    + P + T   +I   C   RVD AL +   I+++ + +PD   
Sbjct: 70  KHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGH-QPDTAT 128

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F +L++GLC VG++  AL V ++MV +  + +   Y +L++ L K  +  E   +  EM 
Sbjct: 129 FTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMI 188

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +G  P+  TYN+LI   C   +++   T+L+EM       N +S N+++  LCK+GK
Sbjct: 189 AKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGK 246



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 103/239 (43%), Gaps = 3/239 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ +I    + +  D+   +  ++     ++P  + +  +I        L+ A+ +
Sbjct: 300 NVVSYNTLINGYCKIQRIDKAMYLFEEMCRQ-ELIPNTMTYSTLIHGLCHVGRLQDAIAL 358

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           F+EM +      +  ++ LL+      +L     L + +E   + PD   YNI I G   
Sbjct: 359 FNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCR 418

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  LE A  +F  +  R LQP + T   +I GLC    +DEA KL  + M       +G 
Sbjct: 419 AGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFRE-MDENGCLRNGC 477

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
            + ++ +GL    + S A+ + EEM+      D    + L+  L   G       IL E
Sbjct: 478 TYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKMLSDDGLDQSVKQILCE 536


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 155/307 (50%), Gaps = 16/307 (5%)

Query: 39  PLKPFRYNLLHYDLIITKLGR----AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYG 94
           P     Y++L + L   KLGR     +M DEM++            P  + +  ++  + 
Sbjct: 345 PPDVHTYSILMHGL--CKLGRFGSAVRMLDEMEE--------KGCAPNIVTYSTLLHSFC 394

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDAC 153
           R  + + A  M D+M +    M  + +N ++      GKLD+   L Q M+ +   PD C
Sbjct: 395 RNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDIC 454

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN +I+    +  +E+A  +F  +++  +    +T+ TLI+ L    R  E L+L  ++
Sbjct: 455 TYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEM 514

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           + ++  + D   +  LIK LC  G +  ++ + EEMV   I+ +   Y+ LI+ L KAG+
Sbjct: 515 L-LHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGK 573

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             +   + KEM  +G  P+ VTYN LI+G CK     AA  +L+++ ++    + ++YN+
Sbjct: 574 VRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNI 633

Query: 334 ILGGLCK 340
           ++   CK
Sbjct: 634 LISWHCK 640



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 141/300 (47%), Gaps = 41/300 (13%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           +P  + +  ++    R R  + A  M   +   NV M     NT++   LT GKL R  E
Sbjct: 279 MPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVVM----LNTVIRGCLTEGKLARATE 334

Query: 140 LFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL----- 193
           L+++M  K   PD  +Y+IL+HG     R   A ++ DEM ++   P +VT+ TL     
Sbjct: 335 LYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFC 394

Query: 194 ------------------------------IYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
                                         IY LC + ++D+A +L ++ M+    KPD 
Sbjct: 395 RNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQE-MKSQGCKPDI 453

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + ++I  LC    +  A  +   ++ + +  +   Y++LI AL + GR  E   +  E
Sbjct: 454 CTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASE 513

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M   GC+ + ++YN LI   CKE + + +  +L+EM  KG K N  SYN+++  LCK GK
Sbjct: 514 MLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGK 573



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 138/295 (46%), Gaps = 7/295 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+++++ L RA    +   +  ++  D R+ P    F        R      AL +   M
Sbjct: 145 YNVVLSTLARADCHADALLLYRRMLRD-RVPPTTFTFGVAARALCRLGRAGDALALLRGM 203

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
           +          + T+++  +  G +     L  +++    + D  ++N L+ G     R+
Sbjct: 204 ARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRV 263

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A ++ D M+ +   P++VT+G L+ GLC   + DEA  +   +  V  V     +  +
Sbjct: 264 REAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVV-----MLNT 318

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I+G    G+L+ A  + E M       D   YS L+  L K GR      +L EM+E+G
Sbjct: 319 VIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKG 378

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C PN VTY+ L+  FC+   ++ A  +LD+M  KG   N   YN I+  LCKDGK
Sbjct: 379 CAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGK 433



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 144/291 (49%), Gaps = 3/291 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  ++    R  M+D+ + +L Q+      +  +  +  +I    +   L++A ++
Sbjct: 382 NIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQG-YNGIIYALCKDGKLDQATRL 440

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
             EM S   +  +  +NT++        ++  + +F+ ++E+ V  +  +YN LIH  + 
Sbjct: 441 VQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLR 500

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R ++  ++  EM+    Q  ++++  LI  LC E  VD ++ L E+ M    +KP+  
Sbjct: 501 NGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEE-MVTKGIKPNNF 559

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LI  LC  G++  AL + +EM+   +  D   Y++LI+ L K G  +    +L+++
Sbjct: 560 SYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKL 619

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
                 P+ VTYN LIS  CK    + A  +LD+    G   N  ++ +++
Sbjct: 620 PNENVHPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPNERTWGMMV 670



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 121/267 (45%), Gaps = 3/267 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  N   Y+ II  L +    D+  +++ ++K      P    +  +I       L+E
Sbjct: 412 KGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQG-CKPDICTYNTMIYHLCNNDLME 470

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILI 159
            A  +F  +    V      +NTL++  L  G+  + ++   +++      D  SYN LI
Sbjct: 471 EAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLI 530

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
                   ++ +  + +EMV + ++P   ++  LI  LC   +V +AL+L ++++    +
Sbjct: 531 KALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLN-QGL 589

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   + +LI GLC VG    AL + E++  + +  D   Y+ LIS   K    ++   
Sbjct: 590 TPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAM 649

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKE 306
           +L +    G  PN  T+  ++  F ++
Sbjct: 650 LLDKAISGGIVPNERTWGMMVQNFVRQ 676



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 66/138 (47%)

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           AL L + + R + V P  + +  ++  L      + AL +   M+RD++      +    
Sbjct: 125 ALHLLDQMPRRFAVSPSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAA 184

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
            AL + GR  +  A+L+ M   GC P++V Y  +I     +     A  +LDEM   GC 
Sbjct: 185 RALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCA 244

Query: 326 ANPISYNVILGGLCKDGK 343
           A+  ++N ++ GLC  G+
Sbjct: 245 ADVNTFNDLVLGLCGLGR 262


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 153/310 (49%), Gaps = 13/310 (4%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKM-FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           LKP   NL+ Y+ +I   G+  + F+   +I  ++  +  + P  I F +++   GR  L
Sbjct: 251 LKP---NLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNG-VQPDRITFNSLLAVCGRGGL 306

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME----KYVSPDACS 154
            E A  +F EM    ++  +  +NTLL+     G++D     FQIM     K++ P+  +
Sbjct: 307 WEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLA---FQIMSEMPRKHIMPNVVT 363

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           Y+ +I G   + RL++A  +F+EM    +    V++ TL+       R +EAL + ++ M
Sbjct: 364 YSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKE-M 422

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
               +K D   + +L+ G    G+      V EEM  ++I  +   YS+LI    K G  
Sbjct: 423 ESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLY 482

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            E   + +E K+ G K + V Y+ALI   CK    E+A + LDEM  +G + N ++YN I
Sbjct: 483 QEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSI 542

Query: 335 LGGLCKDGKC 344
           +    + G  
Sbjct: 543 IDAFGRSGSA 552



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 141/297 (47%), Gaps = 4/297 (1%)

Query: 50  YDLIITKLG-RAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDE 108
           Y  ++ +LG R +    ++     ++ + R   +  +   +I   GR   +E A  +F+ 
Sbjct: 151 YTFLLRELGNRGEWAKAIRCFEFAVRREQRRNEQGKLASAMISILGRLGQVELAKNVFET 210

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSR- 166
             +     TV  F+ L++     G  D   ++F+ M+   + P+  +YN +I  C     
Sbjct: 211 ALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGV 270

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
               A ++FDEM++  +QP  +TF +L+  +C    + EA +     M    ++ D   +
Sbjct: 271 DFNRAAEIFDEMLRNGVQPDRITFNSLL-AVCGRGGLWEAARNLFSEMLYRGIEQDIFTY 329

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
            +L+  +C  G++ LA  +  EM R  I  +   YS++I    KAGR +E   +  EMK 
Sbjct: 330 NTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKF 389

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
                + V+YN L+S + K   FE A  +  EM   G K + ++YN +LGG  K GK
Sbjct: 390 ASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGK 446



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 130/311 (41%), Gaps = 32/311 (10%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           P K    N++ Y  +I    +A   DE   + +++K  + I    + +  ++  Y +   
Sbjct: 353 PRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFAS-IGLDRVSYNTLLSIYAKLGR 411

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
            E AL +  EM S  ++     +N LL      GK + +K +F+ M+ + + P+  +Y+ 
Sbjct: 412 FEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYST 471

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI         ++A +VF E  K  L+  +V +  LI  LC    V+ A+   +++ +  
Sbjct: 472 LIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTK-E 530

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEE------------MVRDKIEMDAG------ 259
            ++P+   + S+I      G     +    E            +V D  E + G      
Sbjct: 531 GIRPNVVTYNSIIDAFGRSGSAECVIDPPYETNVSKMSSSSLKVVEDATESEVGDKEDNQ 590

Query: 260 ---IYSSLISALFKAGRKNE--------FPAILKEMKERGCKPNSVTYNALISGFCKEED 308
              I+  L +      +K            A+  +M E   KPN VT++A+++   +   
Sbjct: 591 IIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHKMHELDIKPNVVTFSAILNACSRCNS 650

Query: 309 FEAAFTILDEM 319
           FE A  +L+E+
Sbjct: 651 FEDASMLLEEL 661


>gi|410109927|gb|AFV61043.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           javanica]
          Length = 431

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 136/258 (52%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    +  ++  Y R   L+   ++   M +  VQ  V  ++ L+N       +D   EL
Sbjct: 175 PXVXSYNTLMNGYIRLGXLDEGFRLKSAMXASGVQPDVYTYSVLINGLXKESXMDDXNEL 234

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K + P++ ++  LI G   + R++ A +++ +M+ + L P  +T+ TL YGLC 
Sbjct: 235 FDEMLXKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLXPDFITYNTLXYGLCK 294

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  +++A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 295 KGDLNQAHGLIDE-MSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIXLDDV 353

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP+  TY  +I+ FCK+ D       L EM
Sbjct: 354 AYTALISGLCQEGRSXDAEKMLREMLSVGLKPDXGTYTMIINEFCKKGDVWKGXKXLKEM 413

Query: 320 GDKGCKANPISYNVILGG 337
              G     ++YNV++ G
Sbjct: 414 QRNGHVPXVVTYNVLMNG 431



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 124/242 (51%), Gaps = 2/242 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIH 160
           A  +FD ++ + ++  V  +NTL+N  +  G LD    L   M    V PD  +Y++LI+
Sbjct: 161 AQSVFDAITKWGLRPXVXSYNTLMNGYIRLGXLDEGFRLKSAMXASGVQPDVYTYSVLIN 220

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G      ++D  ++FDEM+ + L P  VTF TLI G C   RVD A+++ + ++    + 
Sbjct: 221 GLXKESXMDDXNELFDEMLXKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QXLX 279

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   + +L  GLC  G+L+ A G+ +EM    ++ D   Y++LI    K G  +     
Sbjct: 280 PDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEH 339

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            K M +     + V Y ALISG C+E     A  +L EM   G K +  +Y +I+   CK
Sbjct: 340 RKRMIQENIXLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDXGTYTMIINEFCK 399

Query: 341 DG 342
            G
Sbjct: 400 KG 401



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 126/250 (50%), Gaps = 2/250 (0%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDAC 153
           + R  +     ++E+       ++ FFN L++     G +   + +F  + K+ + P   
Sbjct: 119 KLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPXVX 178

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           SYN L++G +    L++ +++   M    +QP + T+  LI GL  E  +D+  +L ++ 
Sbjct: 179 SYNTLMNGYIRLGXLDEGFRLKSAMXASGVQPDVYTYSVLINGLXKESXMDDXNELFDE- 237

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M    + P+   F +LI G C  G + LA+ + ++M+   +  D   Y++L   L K G 
Sbjct: 238 MLXKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLXPDFITYNTLXYGLCKKGD 297

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            N+   ++ EM  +G KP+  TY  LI G CKE D +AAF     M  +    + ++Y  
Sbjct: 298 LNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIXLDDVAYTA 357

Query: 334 ILGGLCKDGK 343
           ++ GLC++G+
Sbjct: 358 LISGLCQEGR 367


>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           viburnoides]
          Length = 431

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 135/258 (52%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++  Y R   L+   ++   M +  VQ  V  ++ L+N      K D   EL
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANEL 234

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K + P+   +  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 235 FDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 294

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M    +KPD   + +LI G C  G+L  A    + M+++   +D  
Sbjct: 295 KGDLKQAHHLIDE-MSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXV 353

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L   GR  +   +L+EM   G KP++ TY  +I+ FCK+ D      +L EM
Sbjct: 354 XYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEM 413

Query: 320 GDKGCKANPISYNVILGG 337
              G   + ++YNV++ G
Sbjct: 414 QRDGHVPSVVTYNVLMNG 431



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 125/239 (52%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   SYN L++G + 
Sbjct: 130 YEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++ +++   M+   +QP + T+  LI G C E + D+A +L ++ M V  + P+  
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDE-MLVKGLVPNXV 248

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM
Sbjct: 249 XFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 308

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G KP+ +TY  LI G CKE D + AF     M  +  + + + Y  ++ GLC +G+
Sbjct: 309 SXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGR 367



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 128/244 (52%), Gaps = 6/244 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS--AMLASGVQPDVYTYSVL 218

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G     + +DA ++FDEM+ + L P  V F TLI G C   RVD A+++ + ++   +
Sbjct: 219 INGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLS-QS 277

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   + +LI GLC  G+L  A  + +EM    ++ D   Y++LI    K G  +   
Sbjct: 278 LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAF 337

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
              K M +   + + V Y ALISG C E     A  +L EM   G K +  +Y +I+   
Sbjct: 338 EHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEF 397

Query: 339 CKDG 342
           CK G
Sbjct: 398 CKKG 401



 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 49/103 (47%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G      ++   + + G +P+ V+YN L+
Sbjct: 125 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLM 184

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ G CK+ K
Sbjct: 185 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESK 227


>gi|255660942|gb|ACU25640.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 484

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 175/338 (51%), Gaps = 16/338 (4%)

Query: 18  PKLALQLFKNPNPNPNDTEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQ 68
           P +  +L  N   +  ++E H L+ FR+    NL  ++      II  LGRA   +  + 
Sbjct: 8   PSIDHELVYNVLHSAKNSE-HALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARC 66

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           IL  +     +   E ++  +I  YG+A +++ +++MF +M    V+ T+K ++ L    
Sbjct: 67  ILLDMPKKG-LEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVERTIKSYDALFKVI 125

Query: 129 LTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
           L  G+    K  F +++ + + P   ++N+++ G  +S ++E A + F++M  R + P +
Sbjct: 126 LRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMMWGFFLSGKVETANRFFEDMKSREIMPDV 185

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           VT+ T++ G C   +++EA K   + M+  N++P    + +LIKG  +V  +  AL + E
Sbjct: 186 VTYNTMVNGYCRVKKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVE 244

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCK 305
           EM    ++ +A  YS+L+  L  A + +E  +ILKEM E+   P  NS+ +  LISG CK
Sbjct: 245 EMKGFGMKPNAITYSTLLPGLCNAEKMSEARSILKEMVEKYIAPTDNSI-FMRLISGQCK 303

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             D +AA  +L  M           Y V++   CK G+
Sbjct: 304 AGDLDAAANVLKAMIRLSVPTEAGHYGVLIENYCKAGE 341



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 129/261 (49%), Gaps = 11/261 (4%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVS 149
           GF+   ++ E A + F++M S  +   V  +NT++N      K++  ++ F  M+ + + 
Sbjct: 159 GFFLSGKV-ETANRFFEDMKSREIMPDVVTYNTMVNGYCRVKKMEEAEKYFVEMKGRNIE 217

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P   +Y  LI G V   R++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA  +
Sbjct: 218 PTVVTYTTLIKGYVSVDRVDDALRLVEEMKGFGMKPNAITYSTLLPGLCNAEKMSEARSI 277

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            ++++  Y    D  +F  LI G C  G+L  A  V + M+R  +  +AG Y  LI    
Sbjct: 278 LKEMVEKYIAPTDNSIFMRLISGQCKAGDLDAAANVLKAMIRLSVPTEAGHYGVLIENYC 337

Query: 270 KAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEMGD 321
           KAG  ++   +L ++ E+    +P S        YN LI   C       A  ++ ++  
Sbjct: 338 KAGEYDKAIKLLDKVIEKDIILRPQSTLHMESSAYNPLIEYLCNNGQTAKAEALVRQLMK 397

Query: 322 KGCKANPISYNVILGGLCKDG 342
            G + +P + N ++ G  ++G
Sbjct: 398 LGVQ-DPTALNTLIRGHSQEG 417



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 132/289 (45%), Gaps = 45/289 (15%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I+P  + +  ++  Y R + +E A + F EM   N++ TV  + TL+   ++  ++D   
Sbjct: 181 IMPDVVTYNTMVNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDAL 240

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT-FGTLIYG 196
            L + M+ + + P+A +Y+ L+ G   + ++ +A  +  EMV++ + PT  + F  LI G
Sbjct: 241 RLVEEMKGFGMKPNAITYSTLLPGLCNAEKMSEARSILKEMVEKYIAPTDNSIFMRLISG 300

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI-- 254
            C    +D A  + + ++R+ +V  +   +  LI+  C  GE   A+ + ++++   I  
Sbjct: 301 QCKAGDLDAAANVLKAMIRL-SVPTEAGHYGVLIENYCKAGEYDKAIKLLDKVIEKDIIL 359

Query: 255 ------EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK-----------------P 291
                  M++  Y+ LI  L   G+  +  A+++++ + G +                 P
Sbjct: 360 RPQSTLHMESSAYNPLIEYLCNNGQTAKAEALVRQLMKLGVQDPTALNTLIRGHSQEGSP 419

Query: 292 NSV-----------------TYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +S                  +Y++L+  + K+ +   A   LD M + G
Sbjct: 420 DSAFELLKIMLRRKVDSEQSSYDSLVQSYLKKNEPADAKAALDSMIENG 468


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/207 (34%), Positives = 110/207 (53%), Gaps = 1/207 (0%)

Query: 137 MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           M+ L + +EK   PD  +Y ILI        +  A K+ DEM  R  +P +VT+  L+ G
Sbjct: 1   MEVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNG 60

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           +C E R+DEA+K     M  Y  +P+      +++ +C+ G    A  +  EMVR     
Sbjct: 61  MCKEGRLDEAIKFLNS-MPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSP 119

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
               ++ LI+ L + G       IL++M   GC PNS++YN L+ GFCKE+  + A   L
Sbjct: 120 SVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYL 179

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
           + M  +GC  + ++YN +L  LCKDGK
Sbjct: 180 EIMVSRGCYPDIVTYNTMLTALCKDGK 206



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 126/244 (51%), Gaps = 2/244 (0%)

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILI 159
           +A+++ DEM S   +  V  +N L+N     G+LD   +    M  Y S P+  ++NI++
Sbjct: 34  QAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIIL 93

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
                + R  DA K+  EMV++   P++VTF  LI  LC +  +  A+ + E  M  +  
Sbjct: 94  RSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEK-MPTHGC 152

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   +  L+ G C   ++  A+   E MV      D   Y+++++AL K G+ +    
Sbjct: 153 TPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVE 212

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +L ++  +GC P  +TYN +I G  K    + A  +L EM  KG K + I+Y+ ++ GL 
Sbjct: 213 LLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLS 272

Query: 340 KDGK 343
           ++GK
Sbjct: 273 REGK 276



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 149/300 (49%), Gaps = 7/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERAL 103
           +++ Y++++  + +    DE  + L+ +          +I  N+I        R ++ A 
Sbjct: 50  DVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGS--QPNVITHNIILRSMCSTGRWMD-AE 106

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
           ++  EM       +V  FN L+N     G L R  ++ + M  +  +P++ SYN L+HG 
Sbjct: 107 KLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGF 166

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
              ++++ A +  + MV R   P +VT+ T++  LC + +VD A++L    +      P 
Sbjct: 167 CKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQ-LSSKGCSPV 225

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + ++I GL  VG+   A+ +  EM    ++ D   YSSLI+ L + G+  E      
Sbjct: 226 LITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFH 285

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +++  G KPN+ TYN+++ G CK +  + A   L  M  KGCK   +SY +++ G+  +G
Sbjct: 286 DVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEG 345



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 140/279 (50%), Gaps = 3/279 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ +++I+  +     + + +++L ++       P  + F  +I F  R  LL RA+ +
Sbjct: 85  NVITHNIILRSMCSTGRWMDAEKLLTEMVRKG-CSPSVVTFNILINFLCRKGLLGRAIDI 143

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            ++M +         +N LL+      K+DR  +  +IM  +   PD  +YN ++     
Sbjct: 144 LEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCK 203

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +++ A ++ +++  +   P L+T+ T+I GL    + D+A++L  + MR   +KPD  
Sbjct: 204 DGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHE-MRGKGLKPDVI 262

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++SLI GL   G++  A+    ++    ++ +A  Y+S++  L KA + +     L  M
Sbjct: 263 TYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYM 322

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
             +GCKP  V+Y  LI G   E   + A  +L+E+  +G
Sbjct: 323 ISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRG 361


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 130/264 (49%), Gaps = 13/264 (4%)

Query: 84  IIFCNVI----GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           ++ CN++       GR    ER        ++     TV  +NT++N     G+++  + 
Sbjct: 187 VVPCNILIKRLCSDGRVSDAERVF------AALGPSATVVTYNTMVNGYCRAGRIEDARR 240

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L   M     PD  ++N LI    V  R+ DA  VFD+M+ R   P++VT+  L+   C 
Sbjct: 241 LINGMP--FPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCK 298

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E    +A+ L ++ MR    +PD   +  LI  +C  G++  AL +   +     + DA 
Sbjct: 299 ESGYRQAMALLDE-MRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAV 357

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+ ++ +L  + R  E   +L EM    C P+ VT+N +++  C++   + A  ++D M
Sbjct: 358 TYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHM 417

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
            + GC A+ ++Y+ IL GLC  G+
Sbjct: 418 SEHGCVADIVTYSSILDGLCDVGR 441



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 155/343 (45%), Gaps = 43/343 (12%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           +H  KP   + + Y  ++  L  ++ + E++++L ++  +    P E+ F  ++    + 
Sbjct: 349 SHGCKP---DAVTYTPVLKSLCGSERWKEVEELLAEMTSN-NCAPDEVTFNTIVTSLCQQ 404

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSY 155
            L++RA+++ D MS       +  ++++L+     G++D   EL   ++ Y   PD  +Y
Sbjct: 405 GLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAY 464

Query: 156 NILIHGCVVSRRLEDA-----------------------------------WKVFDEMVK 180
             ++ G   + + E A                                    +V ++M +
Sbjct: 465 TTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSE 524

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
               P +VT+  +I GLC E  +D+A++L  D+      KPD   F +L+KGLC V    
Sbjct: 525 NGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSC-GCKPDIVTFNTLLKGLCGVDRWE 583

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  +   M+R     D   ++++I++L + G   +    LK M E GC PNS TY+ ++
Sbjct: 584 DAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVV 643

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               K    +AA  +L  M +     + I+YN ++  L K GK
Sbjct: 644 DALLKAGKAQAALELLSGMTNG--TPDLITYNTVISNLTKAGK 684



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 128/245 (52%), Gaps = 8/245 (3%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACS 154
           ++ AL +   + S   +     +  +L  K  CG  +R KE+ +++ +  S    PD  +
Sbjct: 337 VDEALNILSNLPSHGCKPDAVTYTPVL--KSLCGS-ERWKEVEELLAEMTSNNCAPDEVT 393

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           +N ++        ++ A +V D M +      +VT+ +++ GLC   RVD+A++L    +
Sbjct: 394 FNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSR-L 452

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           + Y  KPD   + +++KGLC+  +   A  +  EM+      D   +++++++L + G  
Sbjct: 453 KSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLV 512

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +    ++++M E GC P+ VTYN +I G C E   + A  +L ++   GCK + +++N +
Sbjct: 513 DRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTL 572

Query: 335 LGGLC 339
           L GLC
Sbjct: 573 LKGLC 577



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 139/301 (46%), Gaps = 12/301 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
            ++ Y+ ++    RA   ++ +++++ +       P    F  +I     R R+ + AL 
Sbjct: 218 TVVTYNTMVNGYCRAGRIEDARRLINGMP----FPPDTFTFNPLIRALCVRGRIPD-ALA 272

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTC---GKLDRMKELFQIMEKYVSPDACSYNILIHG 161
           +FD+M       +V  ++ LL+   TC   G    M  L ++  K   PD  +YN+LI+ 
Sbjct: 273 VFDDMLHRGCSPSVVTYSILLD--ATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINA 330

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 +++A  +   +     +P  VT+  ++  LC   R  E  +L  + M   N  P
Sbjct: 331 MCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAE-MTSNNCAP 389

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   F +++  LC  G +  A+ V + M       D   YSS++  L   GR ++   +L
Sbjct: 390 DEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELL 449

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             +K  GCKP+++ Y  ++ G C  E +E A  ++ EM    C  + +++N ++  LC+ 
Sbjct: 450 SRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQK 509

Query: 342 G 342
           G
Sbjct: 510 G 510



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 150/330 (45%), Gaps = 36/330 (10%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  I+  L      D+  ++L +LK      P  I +  V+         ERA ++
Sbjct: 425 DIVTYSSILDGLCDVGRVDDAVELLSRLKS-YGCKPDTIAYTTVLKGLCSTEQWERAEEL 483

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVV 164
             EM   +       FNT++      G +DR ++ + Q+ E   SPD  +YN +I G   
Sbjct: 484 MAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCN 543

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              ++DA ++  ++     +P +VTF TL+ GLC   R ++A +L  ++MR  N  PD  
Sbjct: 544 ESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMR-SNCPPDEL 602

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRD------------------------KIEMDAGI 260
            F ++I  LC  G L+ A+   + M  +                         +E+ +G+
Sbjct: 603 TFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGM 662

Query: 261 ---------YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
                    Y+++IS L KAG+  E   +L+ M   G  P++ TY +L  G C+E+  + 
Sbjct: 663 TNGTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDR 722

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKD 341
           A  +L  + D G   +   YN +L G C+D
Sbjct: 723 AVRMLRRVQDTGLSPDTTFYNDVLLGFCRD 752



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 100/211 (47%), Gaps = 10/211 (4%)

Query: 132 GKLDRMKELFQIMEKYVS---PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
           G++D    LF  M        P     NILI       R+ DA +VF  +       T+V
Sbjct: 164 GEIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSDAERVFAALGP---SATVV 220

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           T+ T++ G C   R+++A +L    +      PD   F  LI+ LC  G +  AL V ++
Sbjct: 221 TYNTMVNGYCRAGRIEDARRL----INGMPFPPDTFTFNPLIRALCVRGRIPDALAVFDD 276

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M+          YS L+ A  K     +  A+L EM+ +GC+P+ VTYN LI+  C E D
Sbjct: 277 MLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGD 336

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLC 339
            + A  IL  +   GCK + ++Y  +L  LC
Sbjct: 337 VDEALNILSNLPSHGCKPDAVTYTPVLKSLC 367



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 140/299 (46%), Gaps = 5/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +++ Y+++I  +      DE   IL  L  H  +  P  + +  V+     +   +   +
Sbjct: 320 DIVTYNVLINAMCNEGDVDEALNILSNLPSHGCK--PDAVTYTPVLKSLCGSERWKEVEE 377

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV 163
           +  EM+S N       FNT++      G +DR  E+   M ++    D  +Y+ ++ G  
Sbjct: 378 LLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLC 437

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              R++DA ++   +     +P  + + T++ GLC   + + A +L  +++   +  PD 
Sbjct: 438 DVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEML-CSDCPPDE 496

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             F +++  LC  G +  A+ V E+M  +    D   Y+ +I  L      ++   +L +
Sbjct: 497 VTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSD 556

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++  GCKP+ VT+N L+ G C  + +E A  ++  M    C  + +++N ++  LC+ G
Sbjct: 557 LQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKG 615



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/330 (19%), Positives = 138/330 (41%), Gaps = 34/330 (10%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           + + Y  ++  L   + ++  ++++ ++   +   P E+ F  V+    +  L++RA+++
Sbjct: 460 DTIAYTTVLKGLCSTEQWERAEELMAEMLC-SDCPPDEVTFNTVVASLCQKGLVDRAIRV 518

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            ++MS       +  +N +++       +D   EL   ++     PD  ++N L+ G   
Sbjct: 519 VEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCG 578

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE------------------------ 200
             R EDA ++   M++    P  +TF T+I  LC +                        
Sbjct: 579 VDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSST 638

Query: 201 --------LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
                   L+  +A    E +  + N  PD   + ++I  L   G++  AL +   MV +
Sbjct: 639 YSIVVDALLKAGKAQAALELLSGMTNGTPDLITYNTVISNLTKAGKMEEALDLLRVMVSN 698

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
            +  D   Y SL   + +    +    +L+ +++ G  P++  YN ++ GFC++   + A
Sbjct: 699 GLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLA 758

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDG 342
                 M   GC  +  +Y ++L  L   G
Sbjct: 759 IDCFAHMVSSGCMPDESTYVILLEALAYGG 788



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 103/243 (42%), Gaps = 3/243 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ ++ ++  L     +++ +Q++  +   +   P E+ F  VI    +  LL +A++ 
Sbjct: 565 DIVTFNTLLKGLCGVDRWEDAEQLMANMMR-SNCPPDELTFNTVITSLCQKGLLTQAIET 623

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
              M+          ++ +++  L  GK     EL   M    +PD  +YN +I     +
Sbjct: 624 LKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNG-TPDLITYNTVISNLTKA 682

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            ++E+A  +   MV   L P   T+ +L YG+C E   D A+++   +     + PD   
Sbjct: 683 GKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDT-GLSPDTTF 741

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           +  ++ G C      LA+     MV      D   Y  L+ AL   G  +E   +L  + 
Sbjct: 742 YNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLC 801

Query: 286 ERG 288
             G
Sbjct: 802 SLG 804


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/251 (35%), Positives = 130/251 (51%), Gaps = 4/251 (1%)

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF--QIMEKYVSPD 151
            +  ++E A  ++ +M +  +Q ++  FNTL+N     GK+ R  EL   QI +  +SPD
Sbjct: 174 AKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKV-REAELILSQIFQYDLSPD 232

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +Y  LI G   +R L+ A+ VFD MVK    P  VT+ TLI GLC E RVDEAL + E
Sbjct: 233 VFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLE 292

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           +++    ++P    +   I  LCA+     A+ +   M +     +   Y++LIS L + 
Sbjct: 293 EMIE-KGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRL 351

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G+      +  +M + G  PN+VTYNALI+  C    F  A  I   M   G  AN  +Y
Sbjct: 352 GKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTY 411

Query: 332 NVILGGLCKDG 342
           N I+ GLC  G
Sbjct: 412 NEIIKGLCLGG 422



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 135/264 (51%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    +  +I    R   LE A+ ++ +M    +      +N L+N     G+     ++
Sbjct: 336 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKI 395

Query: 141 FQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F  ME + S  +  +YN +I G  +   +E A  +F++M+K    PT+VT+ TLI G   
Sbjct: 396 FHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLT 455

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  V+ A +L  D+M+    +PD   +  L+ G    G+L  A    +EMV   +  +  
Sbjct: 456 KGNVNNAARLL-DLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPV 514

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI    K G+ +   ++LK M+E GC PN  +YNA+I+G  KE  F  A  I D+M
Sbjct: 515 SYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKM 574

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
            ++G   N I+Y  ++ GLC++G+
Sbjct: 575 VEQGLLPNVITYTTLIDGLCRNGR 598



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 129/271 (47%), Gaps = 20/271 (7%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  +I  + +   ++ AL +   M        V+ +N ++N      K +R  E 
Sbjct: 511 PNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVIN---GLSKENRFSEA 567

Query: 141 FQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
            +I +K V     P+  +Y  LI G   + R + A+K+F +M KR+  P L T+ +LIYG
Sbjct: 568 EKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYG 627

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC E + DEA ++ E        +P    +++L+ GLC  G    A    E++V+D  E 
Sbjct: 628 LCQEGKADEAERMSE-----IGCEPTLDTYSTLVSGLCRKGRFYEA----EQLVKDMKER 678

Query: 257 ----DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
               D  IY SL+ A  K    +    I   ++ +G + +   Y ALI   CK    E A
Sbjct: 679 GFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEA 738

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             + D M +K   A+ I + V++ GL K+G+
Sbjct: 739 QALFDNMLEKEWNADEIVWTVLVDGLLKEGE 769



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 131/277 (47%), Gaps = 2/277 (0%)

Query: 68  QILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127
            +L++L  D    P + I   +I        + R     +E+S      ++   NTLL  
Sbjct: 113 SMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQ 172

Query: 128 KLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
                 ++  + L+ Q++   + P   ++N LI+      ++ +A  +  ++ +  L P 
Sbjct: 173 LAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPD 232

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
           + T+ +LI G C    +D A  + + +++     P+   +++LI GLC  G +  AL + 
Sbjct: 233 VFTYTSLILGHCRNRNLDLAFGVFDRMVK-EGCDPNSVTYSTLINGLCNEGRVDEALDML 291

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           EEM+   IE     Y+  I+AL     + E   ++  MK+RGC+PN  TY ALISG  + 
Sbjct: 292 EEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRL 351

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              E A  +  +M  +G   N ++YN ++  LC  G+
Sbjct: 352 GKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGR 388


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 148/300 (49%), Gaps = 3/300 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R N++ Y +II +L +  + DE   +  ++     I P  + +  ++  +     L RA+
Sbjct: 195 RPNVVIYSMIIDRLCKDTLVDEAYDLYTEMV-GKGISPDVVTYSILVSGFCIVGQLNRAI 253

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
            + +EM   N+   +  +  L++     GK+   + +  +M K  V+ D   Y+ L+ G 
Sbjct: 254 DLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGY 313

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
            +   + +A +VF  M +  + P +  +  +I GLC   RVDEAL L E+I +  N+ PD
Sbjct: 314 CLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQ-KNMVPD 372

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + SLI  LC  G +S    + +EM+      D   Y++LI AL K G  +   A+  
Sbjct: 373 TVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFN 432

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +MK++  +PN  T+  L+ G CK    + A     ++  KG   N  +Y V++ GLCK+G
Sbjct: 433 KMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEG 492



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 156/302 (51%), Gaps = 3/302 (0%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           FR + + Y ++I  + +        ++L +++  + I P  +I+  +I    +  L++ A
Sbjct: 159 FRLSGISYGILINGVCKIGETRAAIRLLRRIERWS-IRPNVVIYSMIIDRLCKDTLVDEA 217

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
             ++ EM    +   V  ++ L++     G+L+R  +L  +++ + ++PD  +Y IL+  
Sbjct: 218 YDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDA 277

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                ++++A  V   MVK  +   +V + TL+ G CL   V+ A ++   + ++  V P
Sbjct: 278 LCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQM-GVTP 336

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   ++ +I GLC +  +  AL + EE+ +  +  D   Y+SLI  L K+GR +    + 
Sbjct: 337 DVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLF 396

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM +RG  P+ +TYN LI   CK    + A  + ++M D+  + N  ++ ++L GLCK 
Sbjct: 397 DEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKV 456

Query: 342 GK 343
           G+
Sbjct: 457 GR 458



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 120/241 (49%), Gaps = 2/241 (0%)

Query: 84  IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ- 142
           +++  ++  Y     +  A ++F  M+   V   V  ++ ++N      ++D    LF+ 
Sbjct: 304 VVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEE 363

Query: 143 IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR 202
           I +K + PD  +Y  LI     S R+   W +FDEM+ R   P ++T+  LI  LC    
Sbjct: 364 IHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGH 423

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
           +D A+ L    M+   ++P+   F  L+ GLC VG L  AL   ++++     ++   Y+
Sbjct: 424 LDRAIALFNK-MKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYT 482

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
            +I+ L K G  +E  A+   M++ GC  ++VT+  +I  F  +++ + A  ++ EM  +
Sbjct: 483 VMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIAR 542

Query: 323 G 323
           G
Sbjct: 543 G 543



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 99/217 (45%), Gaps = 1/217 (0%)

Query: 127 PKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
           P LT    D + +   +   + +P    +N ++   V  +R   A  ++ +M    ++P 
Sbjct: 33  PPLTHNADDAVSQFNHMFHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPD 92

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
             T   +I   C   +V  A      I+++   +P+     +L+KGLC  G++  AL   
Sbjct: 93  YFTLNIIINCFCHFGQVVLAFSGVSKILKL-GYQPNTITLNTLMKGLCLEGKVKEALRFH 151

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           ++++     +    Y  LI+ + K G       +L+ ++    +PN V Y+ +I   CK+
Sbjct: 152 DKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKD 211

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              + A+ +  EM  KG   + ++Y++++ G C  G+
Sbjct: 212 TLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQ 248


>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 418

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 128/228 (56%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++  +  G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E ++D+A +L ++++    + P+G  F +LI G C 
Sbjct: 195 NAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD-NGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 254 NGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGR 361



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 135/282 (47%), Gaps = 42/282 (14%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ ++++ +V  FNTL+N  +  G LD 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M+   V PD  +Y++LI+G     +++DA ++FDEM+   L P  VTF TLI 
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKE----------------------------------DIMRVYNVKP 221
           G C   RVD A+++ +                                  D M +  +KP
Sbjct: 250 GHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKP 309

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +LI G C  G+L  A   ++ M+++ I +D   Y++LIS L + GR  +   +L
Sbjct: 310 DKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKML 369

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +EM   G KP   TY  +I+ FCK+ D      +L EM   G
Sbjct: 370 REMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 104/198 (52%), Gaps = 2/198 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           ++ A ++FDEM    +      F TL++     G++D   E++ Q++ + +S D  +YN 
Sbjct: 222 MDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNT 281

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G      L+ A  + DEM  + L+P  +T+ TLI G C E  ++ A + ++ +++  
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKE- 340

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N++ D   + +LI GLC  G    A  +  EM+   ++ + G Y+ +I+   K G     
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400

Query: 278 PAILKEMKERGCKPNSVT 295
             +LKEM+  G  P+ VT
Sbjct: 401 SKLLKEMQRDGYMPSVVT 418



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE +          ++ L+ +  K G      ++   + +   +P+ V++N L+
Sbjct: 119 LVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ K  D +  F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221


>gi|296089012|emb|CBI38715.3| unnamed protein product [Vitis vinifera]
          Length = 429

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 152/306 (49%), Gaps = 15/306 (4%)

Query: 15  QKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 74
           Q DP LA ++F   +  PN         F+++   + ++I KLG A+ F  MQ +L +LK
Sbjct: 69  QSDPLLAKEIFDLASLQPN---------FKHSYSSFHILILKLGWARQFSLMQDLLMRLK 119

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
            +   +   + F ++I  YG A L ++AL+ F  M  F+ +   K  N LL   ++    
Sbjct: 120 SEQYSINPSL-FSDIIEIYGEANLPDQALKTFHSMLQFHSKPLPKHLNRLLQLLVSHRNY 178

Query: 135 DRMK-ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
            R   +LF+   +Y VSPD  SYNIL+     +  L  A+ +F++M KR + P + ++  
Sbjct: 179 IRPAFDLFKSAHRYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRI 238

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           L+ GLC + +V+ A+ L ED++    V PD   + +   GLC  G    A    EEM+  
Sbjct: 239 LMQGLCRKSQVNRAVDLLEDMLNKGYV-PDALSYTTF--GLCDQGLYDEAKNYVEEMLSK 295

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
              +   ++ +LI+     G+  E   +L+EM   G  P++ T+ A+I   C+ +     
Sbjct: 296 GFSLHFSVFHALINGFCNVGKLEEACEVLREMLRHGEAPHTETWVAIIPRICEVDKLVRM 355

Query: 313 FTILDE 318
             I DE
Sbjct: 356 ENIFDE 361



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 34/64 (53%)

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + K     G  P++ +YN L+S FC   D   A+T+ ++M  +    +  SY +++ GLC
Sbjct: 185 LFKSAHRYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRILMQGLC 244

Query: 340 KDGK 343
           +  +
Sbjct: 245 RKSQ 248



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 8/162 (4%)

Query: 183 LQPTLVTFGTLIYGLCLELRV-DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV-GELS 240
           + P+L +    IYG   E  + D+ALK    +++ ++ KP  +    L++ L +    + 
Sbjct: 125 INPSLFSDIIEIYG---EANLPDQALKTFHSMLQ-FHSKPLPKHLNRLLQLLVSHRNYIR 180

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  + +   R  +  D   Y+ L+SA    G  +    +  +M +R   P+  +Y  L+
Sbjct: 181 PAFDLFKSAHRYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRILM 240

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            G C++     A  +L++M +KG   + +SY     GLC  G
Sbjct: 241 QGLCRKSQVNRAVDLLEDMLNKGYVPDALSYTTF--GLCDQG 280


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 153/301 (50%), Gaps = 16/301 (5%)

Query: 45  YNLLHYDLIITKLGR----AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           YN+L + L   KLGR     +M DEM++            P  + +  ++  + R  + +
Sbjct: 354 YNILMHGL--CKLGRCGSAVRMLDEMEE--------KGCAPNIVTYSTLLHSFCRNGMWD 403

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
            A  M D+MS+    M  + +N ++      GKLD    L Q M+ +   PD C+YN +I
Sbjct: 404 DARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTII 463

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +    + ++++A  +F  +++  +    +T+ TLI+ L    R  E L+L  + M ++  
Sbjct: 464 YHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANE-MVLHGC 522

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
             D   +  LIK LC  G +  ++ + EEM+   I+ +   Y+ LI+ L KAG+  +   
Sbjct: 523 PLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALE 582

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + KEM  +G  P+ VTYN LI+G CK     AA  +L+++ ++    + ++YN+++   C
Sbjct: 583 LSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHC 642

Query: 340 K 340
           K
Sbjct: 643 K 643



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 134/285 (47%), Gaps = 41/285 (14%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDAC 153
           R R  + A  M   +   NV M     NT++   L  GKL R  EL+++M  K   PD  
Sbjct: 297 RTRQADEAYAMLGRVPEVNVVM----LNTVIRGCLAEGKLARATELYEMMGSKGCPPDVH 352

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL-------------------- 193
           +YNIL+HG     R   A ++ DEM ++   P +VT+ TL                    
Sbjct: 353 TYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQM 412

Query: 194 ---------------IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
                          IY L  + ++DEA++L ++ M+    KPD   + ++I  LC   +
Sbjct: 413 SAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQE-MKSQGCKPDICTYNTIIYHLCNNDQ 471

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           +  A  +   ++ + +  +   Y++LI AL  +GR  E   +  EM   GC  + V+YN 
Sbjct: 472 MDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNG 531

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           LI   CKE + + +  +L+EM  KG K N  SYN+++  LCK GK
Sbjct: 532 LIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGK 576



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 140/290 (48%), Gaps = 13/290 (4%)

Query: 56  KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL--LERALQMFDEMSSFN 113
           KL RA    EM          ++  P ++   N++  +G  +L     A++M DEM    
Sbjct: 331 KLARATELYEMM--------GSKGCPPDVHTYNIL-MHGLCKLGRCGSAVRMLDEMEEKG 381

Query: 114 VQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAW 172
               +  ++TLL+     G  D  + +  Q+  K  S ++  YN +I+      +L++A 
Sbjct: 382 CAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAM 441

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
           ++  EM  +  +P + T+ T+IY LC   ++DEA  +  +++    V  +G  + +LI  
Sbjct: 442 RLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLE-EGVVANGITYNTLIHA 500

Query: 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
           L   G     L +  EMV     +D   Y+ LI AL K G  +    +L+EM  +G KPN
Sbjct: 501 LLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPN 560

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + +YN LI+  CK      A  +  EM ++G   + ++YN ++ GLCK G
Sbjct: 561 NFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVG 610



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 146/291 (50%), Gaps = 3/291 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  ++    R  M+D+ + +L Q+      +  +  +  +I   G+   L+ A+++
Sbjct: 385 NIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQG-YNGIIYALGKDGKLDEAMRL 443

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             EM S   +  +  +NT++       ++D  + +F  ++E+ V  +  +YN LIH  + 
Sbjct: 444 VQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLH 503

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S R ++  ++ +EMV       +V++  LI  LC E  VD ++ L E++M    +KP+  
Sbjct: 504 SGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMM-TKGIKPNNF 562

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LI  LC  G++  AL + +EM+   +  D   Y++LI+ L K G  +    +L+++
Sbjct: 563 SYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKL 622

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
                 P+ VTYN LIS  CK    + A  +LD+    G   N  ++ +++
Sbjct: 623 PNENVHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPNERTWGMMV 673



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 37/242 (15%)

Query: 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           LD+M   F      V+P   SYN ++     +    DA  ++  M++ R+ PT  TFG  
Sbjct: 132 LDQMPRRFA-----VTPSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVA 186

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
              LC   R  +AL L   + R +   PD  ++ ++I  L A G ++ A  + +EM+   
Sbjct: 187 ARALCRLGRARDALALLRGMAR-HGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMG 245

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
              D   ++ ++  L   G   E   ++  M   GC P+ VTY  L+ G C+    + A+
Sbjct: 246 CAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAY 305

Query: 314 TIL-------------------------------DEMGDKGCKANPISYNVILGGLCKDG 342
            +L                               + MG KGC  +  +YN+++ GLCK G
Sbjct: 306 AMLGRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLG 365

Query: 343 KC 344
           +C
Sbjct: 366 RC 367



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 2/171 (1%)

Query: 171 AWKVFDEMVKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           A  + D+M +R  + P+  ++  ++  L       +AL L   ++R   V P    F   
Sbjct: 128 ALHLLDQMPRRFAVTPSFRSYNAVLSTLARADCHADALLLYRRMLR-DRVPPTTFTFGVA 186

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
            + LC +G    AL +   M R     DA +Y ++I AL   G   E   +L EM   GC
Sbjct: 187 ARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGC 246

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             +  T+N ++ G C       A  ++D M   GC  + ++Y  +L GLC+
Sbjct: 247 AADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCR 297



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 67/138 (48%)

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           AL L + + R + V P  + + +++  L      + AL +   M+RD++      +    
Sbjct: 128 ALHLLDQMPRRFAVTPSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAA 187

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
            AL + GR  +  A+L+ M   GC P++V Y  +I     +     A T+LDEM   GC 
Sbjct: 188 RALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCA 247

Query: 326 ANPISYNVILGGLCKDGK 343
           A+  ++N ++ GLC  G 
Sbjct: 248 ADVNTFNDVVLGLCGLGH 265


>gi|414877568|tpg|DAA54699.1| TPA: hypothetical protein ZEAMMB73_211194, partial [Zea mays]
          Length = 709

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 146/295 (49%), Gaps = 2/295 (0%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           +D ++  L R ++ D  ++++ +L     I      F +++  Y RA  L  A+++   M
Sbjct: 131 FDEMLALLSRTRLHDPARRVV-RLMIRRGIRRGTRQFAHLMLSYSRAGKLRSAMRVLQLM 189

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
                   +   N  +N  +  G++D+  E  + M +  V PD  +YN LI G   +RR+
Sbjct: 190 QKDGCAPDICICNVAVNVLVVAGRVDKALEFAERMRRVGVDPDVVTYNCLIKGLCGARRI 249

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A ++   M++    P  +++ T++  LC E RV E   L E +     + PD   +  
Sbjct: 250 VEALEMIGSMLQNGCPPDKISYFTVMSFLCKEKRVAEVWNLLERMRNDAGIFPDQITYNM 309

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI GL   G    AL    E    +  +D   YS+++ +    GR +E   I+ EM  +G
Sbjct: 310 LIHGLAKHGHADEALTFLRESEGKRFRVDQVGYSAIVHSFCLNGRMSEAKEIIGEMISKG 369

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C+P+ VTY+A++ GFC+  + + A  ++  M   GCK N +++  +L GLCK GK
Sbjct: 370 CRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGK 424



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 130/263 (49%), Gaps = 12/263 (4%)

Query: 87  CNVIGFYGRARLLERALQMFDEMSSFNVQM-TVKFFNTLLNPKLTCGKLDRMKELFQIME 145
           C + G  G  R++E AL+M   M         + +F  +      C K  R+ E++ ++E
Sbjct: 238 CLIKGLCGARRIVE-ALEMIGSMLQNGCPPDKISYFTVM---SFLC-KEKRVAEVWNLLE 292

Query: 146 KY-----VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
           +      + PD  +YN+LIHG       ++A     E   +R +   V +  +++  CL 
Sbjct: 293 RMRNDAGIFPDQITYNMLIHGLAKHGHADEALTFLRESEGKRFRVDQVGYSAIVHSFCLN 352

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            R+ EA ++  +++     +PD   +++++ G C +GEL  A  + + M ++  + +   
Sbjct: 353 GRMSEAKEIIGEMIS-KGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVT 411

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
           +++L++ L K G+ +E   +L + +E    P+ +TY+ ++ GF +E     +  ++ +M 
Sbjct: 412 HTALLNGLCKVGKSSEAWELLNKSEEEWWTPSGITYSVIMHGFRREGKLVESCDVVMQML 471

Query: 321 DKGCKANPISYNVILGGLCKDGK 343
            KG     +  N+++  LCK+ K
Sbjct: 472 QKGFFPTAVEINLLIHALCKEQK 494



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 136/310 (43%), Gaps = 17/310 (5%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K FR + + Y  I+          E ++I+ ++       P  + +  V+  + R   L+
Sbjct: 333 KRFRVDQVGYSAIVHSFCLNGRMSEAKEIIGEMISKG-CRPDVVTYSAVVDGFCRIGELD 391

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
           +A +M   M     +        LLN     GK     EL  +  E++ +P   +Y++++
Sbjct: 392 QARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSGITYSVIM 451

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED------I 213
           HG     +L ++  V  +M+++   PT V    LI+ LC E +   A    E        
Sbjct: 452 HGFRREGKLVESCDVVMQMLQKGFFPTAVEINLLIHALCKEQKPARAKDFMEQCQSKGCF 511

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           + V N       F ++I G    G+L  AL + ++M       D   Y+ ++ AL + G+
Sbjct: 512 INVVN-------FTTVIHGFSRQGDLESALSLLDDMYLTNRHPDVVTYTVVVDALGRKGK 564

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E  A++++M  RG  P  VTY  +I  +C++   E    +LD+M  K  +    +YN 
Sbjct: 565 MKEATALVEKMLNRGLLPTPVTYRTVIHRYCEKGAVEDLLNLLDKMLTK--QGFSSAYNQ 622

Query: 334 ILGGLCKDGK 343
           ++  LC  GK
Sbjct: 623 VIEKLCAFGK 632



 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 3/106 (2%)

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           ++++A  + ++M+ R L PT VT+ T+I+  C +  V++ L L + ++     +     +
Sbjct: 564 KMKEATALVEKMLNRGLLPTPVTYRTVIHRYCEKGAVEDLLNLLDKML---TKQGFSSAY 620

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
             +I+ LCA G+LS A  +  +++R   + DA     L+ +    G
Sbjct: 621 NQVIEKLCAFGKLSEAYNLLSKVLRSASKRDAQTCHILMDSFLNRG 666


>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia salsoloides]
          Length = 410

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 134/244 (54%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y R   L+   ++   M +  V+  V  ++ L+N      K+D   EL
Sbjct: 161 PSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGANEL 220

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++K + P+  ++  LI G   + R++ A +++ +M+ + L   L+T+ TLIYGLC 
Sbjct: 221 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCK 280

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ MR+  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 281 KGDLKQAQNLIDE-MRMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDV 339

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           +Y++LIS L + GR  +   +L+EM   G KP++ TY  +I+ FCK+ D      +L EM
Sbjct: 340 VYTTLISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEM 399

Query: 320 GDKG 323
              G
Sbjct: 400 QRDG 403



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 125/228 (54%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 127 SLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLK 186

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
             M    ++P + T+  LI GLC E ++D A +L ++++    + P+G  F +LI G C 
Sbjct: 187 SAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLD-KGLVPNGVTFTTLIDGHCK 245

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM+ +G KP+ +T
Sbjct: 246 NGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKIT 305

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + + Y  ++ GLC++G+
Sbjct: 306 YTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGR 353



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 133/264 (50%), Gaps = 3/264 (1%)

Query: 81  PKEIIFCNVIGF-YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F N++   + +   +  A  +FD ++ + ++ +V  FNTL+N  +  G LD    
Sbjct: 125 PASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 184

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L   M    V PD  +Y++LI+G     +++ A ++FDEM+ + L P  VTF TLI G C
Sbjct: 185 LKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHC 244

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              RVD A+++ + ++   ++  D   + +LI GLC  G+L  A  + +EM    ++ D 
Sbjct: 245 KNGRVDLAMEIYKQMLS-QSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDK 303

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y++LI    K G         K M +   + + V Y  LISG C+E     A  +L E
Sbjct: 304 ITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLRE 363

Query: 319 MGDKGCKANPISYNVILGGLCKDG 342
           M   G K +  +Y +I+   CK G
Sbjct: 364 MLSVGLKPDTGTYTMIINEFCKKG 387



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 113/222 (50%), Gaps = 2/222 (0%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           H + + P    +  +I    +   ++ A ++FDEM    +      F TL++     G++
Sbjct: 190 HASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRV 249

Query: 135 DRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           D   E++ Q++ + +S D  +YN LI+G      L+ A  + DEM  + L+P  +T+ TL
Sbjct: 250 DLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTL 309

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G C E  ++ A + ++ +++  N++ D  V+ +LI GLC  G    A  +  EM+   
Sbjct: 310 IDGCCKEGDLETAFEHRKRMIQE-NIRLDDVVYTTLISGLCQEGRSVDAEKMLREMLSVG 368

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
           ++ D G Y+ +I+   K G       +LKEM+  G  P+ VT
Sbjct: 369 LKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 410



 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  +E++          ++ L+    K G      ++   + + G +P+ V++N L+
Sbjct: 111 LVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLM 170

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 171 NGYIRLGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESK 213


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 138/269 (51%), Gaps = 2/269 (0%)

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           +T   P E+ +  V+    ++     A+++  +M   N+++    ++ +++     G LD
Sbjct: 221 ETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLD 280

Query: 136 RMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
               LF  ME K    D  +YN LI G   + R +D  K+  +M+KR++ P +VTF  LI
Sbjct: 281 NAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLI 340

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
                E ++ EA +L +++M+   + P+   + SLI G C    L  A+ + + M+    
Sbjct: 341 DSFVKEGKLREADQLLKEMMQ-RGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGC 399

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           + D   ++ LI+   KA R ++   + +EM  RG   N+VTYN L+ GFC+    E A  
Sbjct: 400 DPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKK 459

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  EM  +  + + +SY ++L GLC +G+
Sbjct: 460 LFQEMVSRRVRPDIVSYKILLDGLCDNGE 488



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 136/262 (51%), Gaps = 4/262 (1%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMK 138
           P  +IF  ++ G     R+ E AL++ D M     + T+   NTL+N     GK+ D + 
Sbjct: 156 PDTVIFNTLLNGLCLECRVSE-ALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVV 214

Query: 139 ELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            + +++E    P+  +Y  +++    S +   A ++  +M +R ++   V +  +I GLC
Sbjct: 215 LIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLC 274

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
            +  +D A  L  + M +   K D   + +LI G C  G       +  +M++ KI  + 
Sbjct: 275 KDGSLDNAFNLFNE-MEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNV 333

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             +S LI +  K G+  E   +LKEM +RG  PN++TYN+LI GFCKE   E A  ++D 
Sbjct: 334 VTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDL 393

Query: 319 MGDKGCKANPISYNVILGGLCK 340
           M  KGC  + +++N+++ G CK
Sbjct: 394 MISKGCDPDIMTFNILINGYCK 415



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 158/300 (52%), Gaps = 9/300 (3%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           +K F+ +++ Y+ +I     A  +D+  ++L  +    +I P  + F  +I  + +   L
Sbjct: 291 IKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK-RKISPNVVTFSVLIDSFVKEGKL 349

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSY 155
             A Q+  EM    +      +N+L++    C K +R++E  Q+++  +S    PD  ++
Sbjct: 350 READQLLKEMMQRGIAPNTITYNSLIDG--FC-KENRLEEAIQMVDLMISKGCDPDIMTF 406

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           NILI+G   + R++D  ++F EM  R +    VT+ TL+ G C   +++ A KL ++ M 
Sbjct: 407 NILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQE-MV 465

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
              V+PD   +  L+ GLC  GEL  AL +  ++ + K+E+D GIY  +I  +  A + +
Sbjct: 466 SRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVD 525

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +   +   +  +G K ++  YN +IS  C+++    A  +  +M ++G   + ++YN+++
Sbjct: 526 DAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILI 585



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 159/367 (43%), Gaps = 37/367 (10%)

Query: 12  PRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILH 71
           PRL +   L + L   PN      E         NL + D + + L   K  D +     
Sbjct: 19  PRLLETGTLRIALINCPNELLFCCERGFSTFSDRNLSYRDKLSSGLVGIKADDAVDLFRD 78

Query: 72  QLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131
            ++  +R +P  I F  +     + +  E  L +  +M S  +  ++   + ++N    C
Sbjct: 79  MIQ--SRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRC 136

Query: 132 GKLD-RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
            KL      + +IM+    PD   +N L++G  +  R+ +A ++ D MV+   +PTL+T 
Sbjct: 137 RKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITL 196

Query: 191 GTLIYGLCLELRVDEALKLKEDI----------------------------------MRV 216
            TL+ GLCL  +V +A+ L + +                                  M  
Sbjct: 197 NTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEE 256

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
            N+K D   ++ +I GLC  G L  A  +  EM     + D   Y++LI     AGR ++
Sbjct: 257 RNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDD 316

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +L++M +R   PN VT++ LI  F KE     A  +L EM  +G   N I+YN ++ 
Sbjct: 317 GAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLID 376

Query: 337 GLCKDGK 343
           G CK+ +
Sbjct: 377 GFCKENR 383



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 149/294 (50%), Gaps = 3/294 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ + ++I    +     E  Q+L ++     I P  I + ++I  + +   LE A+QM
Sbjct: 332 NVVTFSVLIDSFVKEGKLREADQLLKEMMQ-RGIAPNTITYNSLIDGFCKENRLEEAIQM 390

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            D M S      +  FN L+N      ++D   ELF+ M  + V  +  +YN L+ G   
Sbjct: 391 VDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQ 450

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S +LE A K+F EMV RR++P +V++  L+ GLC    +++AL++   I +   ++ D  
Sbjct: 451 SGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEK-SKMELDIG 509

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++  +I G+C   ++  A  +   +    +++DA  Y+ +IS L +    ++   + ++M
Sbjct: 510 IYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKM 569

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            E G  P+ +TYN LI     ++D   A  +++EM   G  A+  +  +++  L
Sbjct: 570 TEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINML 623



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 123/246 (50%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNI 157
           L+ A  +F+EM     +  +  +NTL+      G+ D   +L + ++++ +SP+  ++++
Sbjct: 279 LDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSV 338

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI   V   +L +A ++  EM++R + P  +T+ +LI G C E R++EA+++  D+M   
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMV-DLMISK 397

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
              PD   F  LI G C    +   L +  EM    +  +   Y++L+    ++G+    
Sbjct: 398 GCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVA 457

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + +EM  R  +P+ V+Y  L+ G C   + E A  I  ++     + +   Y +I+ G
Sbjct: 458 KKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHG 517

Query: 338 LCKDGK 343
           +C   K
Sbjct: 518 MCNASK 523



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 147/302 (48%), Gaps = 5/302 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLL 99
           +  + + + Y +II  L +    D    + +++  + +    +II  N +IG +  A   
Sbjct: 257 RNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEM--EIKGFKADIITYNTLIGGFCNAGRW 314

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNIL 158
           +   ++  +M    +   V  F+ L++  +  GKL    +L  ++M++ ++P+  +YN L
Sbjct: 315 DDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSL 374

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G     RLE+A ++ D M+ +   P ++TF  LI G C   R+D+ L+L  + M +  
Sbjct: 375 IDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFRE-MSLRG 433

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V  +   + +L++G C  G+L +A  + +EMV  ++  D   Y  L+  L   G   +  
Sbjct: 434 VIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKAL 493

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            I  ++++   + +   Y  +I G C     + A+ +   +  KG K +  +YN+++  L
Sbjct: 494 EIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISEL 553

Query: 339 CK 340
           C+
Sbjct: 554 CR 555


>gi|357124808|ref|XP_003564089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Brachypodium distachyon]
          Length = 502

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 123/213 (57%), Gaps = 4/213 (1%)

Query: 135 DRMKELFQIMEKYV-SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR---LQPTLVTF 190
           D + +L     KY+ +P+ C YNILI   V +   E A++V DEM +     ++P LVT+
Sbjct: 170 DLIADLRDPRNKYLPTPNTCVYNILIKHYVKNGDSETAFRVLDEMREYTCGDVRPNLVTY 229

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
            TLI GLC   ++ EA +L E+++   ++ PD   +  +I G C +G++  A  +   M 
Sbjct: 230 STLIGGLCRAGKMKEAFELFEEMIEKDHIVPDQLTYNVIINGFCRLGQVDKARTIFGFMR 289

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
           +++ E +A  Y++L++   + G       + +EMK  G +P++V+Y ALI   C+    +
Sbjct: 290 KNECEPNAFNYATLMNGHSRKGELENLRMVFEEMKSAGVEPDAVSYTALIGCLCRHGSVD 349

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               ++ EM +KGCKA+ ++YN+++ GLCKD +
Sbjct: 350 EGIDLVREMREKGCKADVVTYNLLIEGLCKDKR 382



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 132/282 (46%), Gaps = 4/282 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R NL+ Y  +I  L RA    E  ++  ++     IVP ++ +  +I  + R   +++A 
Sbjct: 223 RPNLVTYSTLIGGLCRAGKMKEAFELFEEMIEKDHIVPDQLTYNVIINGFCRLGQVDKAR 282

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
            +F  M     +     + TL+N     G+L+ ++ +F+ M+   V PDA SY  LI GC
Sbjct: 283 TIFGFMRKNECEPNAFNYATLMNGHSRKGELENLRMVFEEMKSAGVEPDAVSYTALI-GC 341

Query: 163 VVSR-RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
           +     +++   +  EM ++  +  +VT+  LI GLC + R+ EA+ L    + +  V+ 
Sbjct: 342 LCRHGSVDEGIDLVREMREKGCKADVVTYNLLIEGLCKDKRMVEAMDLLRS-LPLEGVQL 400

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   +  ++  LC+ G++  A+G+   M+           + L+  L   GR  +    L
Sbjct: 401 NVASYRIVMNSLCSCGDMEKAVGLLGLMLGRGFLPHYAASNDLLIGLCGVGRVADATVAL 460

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
             +   G KP++  +  L+   C++     +  +LD +  +G
Sbjct: 461 YGLASVGFKPDTSCWGKLVEAVCRDRKLRRSVELLDVLITEG 502



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 139/302 (46%), Gaps = 5/302 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT--RIVPKEIIFCNVIGFYGRARLLERAL 103
           N   Y+++I    +    +   ++L +++  T   + P  + +  +IG   RA  ++ A 
Sbjct: 187 NTCVYNILIKHYVKNGDSETAFRVLDEMREYTCGDVRPNLVTYSTLIGGLCRAGKMKEAF 246

Query: 104 QMFDEMSSFNVQMTVKF-FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
           ++F+EM   +  +  +  +N ++N     G++D+ + +F  M K    P+A +Y  L++G
Sbjct: 247 ELFEEMIEKDHIVPDQLTYNVIINGFCRLGQVDKARTIFGFMRKNECEPNAFNYATLMNG 306

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 LE+   VF+EM    ++P  V++  LI  LC    VDE + L  + MR    K 
Sbjct: 307 HSRKGELENLRMVFEEMKSAGVEPDAVSYTALIGCLCRHGSVDEGIDLVRE-MREKGCKA 365

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   +  LI+GLC    +  A+ +   +  + ++++   Y  ++++L   G   +   +L
Sbjct: 366 DVVTYNLLIEGLCKDKRMVEAMDLLRSLPLEGVQLNVASYRIVMNSLCSCGDMEKAVGLL 425

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             M  RG  P+    N L+ G C       A   L  +   G K +   +  ++  +C+D
Sbjct: 426 GLMLGRGFLPHYAASNDLLIGLCGVGRVADATVALYGLASVGFKPDTSCWGKLVEAVCRD 485

Query: 342 GK 343
            K
Sbjct: 486 RK 487


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 167/362 (46%), Gaps = 49/362 (13%)

Query: 21  ALQLFKNPNPNPN------DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 74
           ++ L K+P  +P+         + P+KP     L  D++++    +KM  E  ++   +K
Sbjct: 85  SMLLPKSPFSSPSHLYTLFSLSSTPMKP-----LFSDMLLSICSESKMVSESAELYMLMK 139

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
            D  ++P        +      +  E  LQ+F E+    ++     +   +   +  G L
Sbjct: 140 KDG-VLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDL 198

Query: 135 DRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
            R  EL   M++  VSP    YN++I G    +R++DA K+FDEM+ RR+ P  +T+ TL
Sbjct: 199 KRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTL 258

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV----------------- 236
           I G C   +++EA  ++E  M+V NV+P    F SL+ GLC                   
Sbjct: 259 IDGYCKVGQLEEAFNIRER-MKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYG 317

Query: 237 ------------------GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
                             G +  ++ + EE VR  +++     S L++AL K G   +  
Sbjct: 318 FVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAE 377

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +LK+  E G  P  V +N +++G+C+  D   A+T +++M   G + N ++YN ++   
Sbjct: 378 EVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKF 437

Query: 339 CK 340
           C+
Sbjct: 438 CE 439



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 148/297 (49%), Gaps = 9/297 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+++I  L + K   + +++  ++  D R+ P  I +  +I  Y +   LE A  + + M
Sbjct: 220 YNVVIGGLCKEKRMKDAEKLFDEML-DRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERM 278

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
              NV+ T+  FN+LLN       ++  + + + ME Y   PD  +Y  L  G +    +
Sbjct: 279 KVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNV 338

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY---NVKPDGQV 225
           + +  + +E V++ +Q    T   L+  LC E  +++A    E++++ +    + P G  
Sbjct: 339 DASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKA----EEVLKKFLENGLAPVGVF 394

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F +++ G C VG+++ A    E+M    +  +   Y+SL+    +     E    +K+M 
Sbjct: 395 FNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMV 454

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           E+G  PN  TYN LI G+ +   F+  F IL+EM  KG K N ISY  ++  LCKD 
Sbjct: 455 EKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDA 511



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 152/314 (48%), Gaps = 13/314 (4%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           + E   LKP   N++ Y  +I  L +     E + IL  + H   +VP   I+  +I   
Sbjct: 487 EMEKKGLKP---NVISYGCLINCLCKDANILEAEVILGDMVHRG-VVPNAQIYNMLIDGS 542

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDA 152
             A  L+ A + FDEM +  +  T+  +N L+N     GK+   + L  +I  K +S D 
Sbjct: 543 CIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDV 602

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN LI G   +  ++ A ++++ M K  ++PTL T+  LI G        E L L E 
Sbjct: 603 ITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCG-----KEGLVLVEK 657

Query: 213 I---MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
           I   M   N+ PD  ++ +LI      G++  A  +   M    I+ D   Y+ LI   F
Sbjct: 658 IYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHF 717

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           K GR ++   ++ +MK RG  P + TY+ LI G CK +DF+ A+    EM + G   +  
Sbjct: 718 KEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTPSVS 777

Query: 330 SYNVILGGLCKDGK 343
             + ++ GL ++G+
Sbjct: 778 ICDNLITGLREEGR 791



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 132/265 (49%), Gaps = 2/265 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           + P  + F  ++  Y +   + +A    ++M +  ++     +N+L+        ++  +
Sbjct: 388 LAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAE 447

Query: 139 ELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           +  + M EK V P+  +YN LI G   S   +  +++ +EM K+ L+P ++++G LI  L
Sbjct: 448 KCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCL 507

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C +  + EA  +  D++    V P+ Q++  LI G C  G+L  A    +EMV  +I   
Sbjct: 508 CKDANILEAEVILGDMVH-RGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPT 566

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+ LI+ L K G+  E   +  E+  +G   + +TYN+LISG+    + + A  + +
Sbjct: 567 LVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYE 626

Query: 318 EMGDKGCKANPISYNVILGGLCKDG 342
            M   G K    +Y+ ++ G  K+G
Sbjct: 627 TMKKSGIKPTLNTYHRLIAGCGKEG 651



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 142/299 (47%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            ++ ++ ++  L RA+M +E Q++L +++     VP    +  +   + +   ++ ++ +
Sbjct: 286 TIITFNSLLNGLCRAQMMEEAQRVLEEMEV-YGFVPDRFTYTTLFDGHLKCGNVDASITL 344

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
            +E     VQ+     + LLN     G +++ +E+ +  +E  ++P    +N +++G   
Sbjct: 345 SEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQ 404

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +  A+   ++M    L+P  VT+ +L+   C    ++EA K  + ++    V P+ +
Sbjct: 405 VGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVE-KGVLPNVE 463

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G            + EEM +  ++ +   Y  LI+ L K     E   IL +M
Sbjct: 464 TYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDM 523

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             RG  PN+  YN LI G C     + AF   DEM  +      ++YN+++ GLCK GK
Sbjct: 524 VHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGK 582



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 124/248 (50%), Gaps = 2/248 (0%)

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACS 154
           ++++  + +++  M    V  +V   N  L   ++  + +   +LF +I+E  + PD   
Sbjct: 125 SKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFM 184

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           Y   I   V    L+ A ++   M +  + P +  +  +I GLC E R+ +A KL ++++
Sbjct: 185 YGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEML 244

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
               V P+   + +LI G C VG+L  A  ++E M  + +E     ++SL++ L +A   
Sbjct: 245 D-RRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMM 303

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            E   +L+EM+  G  P+  TY  L  G  K  + +A+ T+ +E   KG +    + +++
Sbjct: 304 EEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSIL 363

Query: 335 LGGLCKDG 342
           L  LCK+G
Sbjct: 364 LNALCKEG 371



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 105/222 (47%), Gaps = 3/222 (1%)

Query: 119 KFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
           +   ++L PK        +  LF +    + P     ++L+  C  S+ + ++ +++  M
Sbjct: 81  RLIRSMLLPKSPFSSPSHLYTLFSLSSTPMKP--LFSDMLLSICSESKMVSESAELYMLM 138

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
            K  + P++ +    +  L    R ++ L+L  +I+    ++PD  ++   I+    +G+
Sbjct: 139 KKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVE-SGLRPDQFMYGKAIQAAVKLGD 197

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           L  A+ +   M R  +     +Y+ +I  L K  R  +   +  EM +R   PN +TYN 
Sbjct: 198 LKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNT 257

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           LI G+CK    E AF I + M  +  +   I++N +L GLC+
Sbjct: 258 LIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCR 299



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 2/155 (1%)

Query: 190 FGTLIYGLCLELR-VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           F  ++  +C E + V E+ +L   +M+   V P        ++ L +       L +  E
Sbjct: 114 FSDMLLSICSESKMVSESAELYM-LMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSE 172

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           +V   +  D  +Y   I A  K G       ++  MK  G  P    YN +I G CKE+ 
Sbjct: 173 IVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKR 232

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + A  + DEM D+    N I+YN ++ G CK G+
Sbjct: 233 MKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQ 267


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 127/243 (52%), Gaps = 1/243 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           AL  F +++   +   V  FNTLL+      ++     LF Q+ E    P+  ++  L++
Sbjct: 133 ALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMN 192

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     R+ +A  + D M++  LQPT +T+GT++ G+C +     AL L   +  V ++ 
Sbjct: 193 GLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHII 252

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+  +++++I  LC  G  S A  +  EM    I  D   Y+S+I     +GR ++   +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L+EM ER   P+ VTYNALI+ F KE  F  A  + DEM  +G   N I+Y+ ++ G CK
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 341 DGK 343
             +
Sbjct: 373 QNR 375



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 156/310 (50%), Gaps = 14/310 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L  Y+ +I     +  + + +Q+L ++  + +I P  + +  +I  + +      A ++
Sbjct: 289 DLFTYNSMIVGFCSSGRWSDAEQLLQEML-ERKISPDVVTYNALINAFVKEGKFFEAEEL 347

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           +DEM    +      ++++++      +LD  + +F +M  K  SP+  ++N LI G   
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCG 407

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           ++R++D  ++  EM +  L     T+ TLI+G  L   ++ AL L ++++    + PD  
Sbjct: 408 AKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMIS-SGLCPDIV 466

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG-----------IYSSLISALFKAGR 273
              +L+ GLC  G+L  AL + + M + K ++DA             Y+ LIS L   G+
Sbjct: 467 TCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGK 526

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   + +EM  RG  P+++TY+++I G CK+   + A  + D MG K    N +++  
Sbjct: 527 FLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTT 586

Query: 334 ILGGLCKDGK 343
           ++ G CK G+
Sbjct: 587 LINGYCKAGR 596



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 149/309 (48%), Gaps = 12/309 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I    +   F E +++  ++     I+P  I + ++I  + +   L+ A  M
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEML-PRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVV 164
           F  M++      +  FNTL++      ++D  M+ L ++ E  +  D  +YN LIHG  +
Sbjct: 383 FYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYL 442

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-------KEDIMRVY 217
              L  A  +  EM+   L P +VT  TL+ GLC   ++ +AL++       K+D+   +
Sbjct: 443 VGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASH 502

Query: 218 ---NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
               V+PD Q +  LI GL   G+   A  + EEM    I  D   YSS+I  L K  R 
Sbjct: 503 PFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRL 562

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +E   +   M  +   PN VT+  LI+G+CK    +    +  EMG +G  AN I+Y  +
Sbjct: 563 DEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITL 622

Query: 335 LGGLCKDGK 343
           + G  K G 
Sbjct: 623 ICGFRKVGN 631



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 144/287 (50%), Gaps = 16/287 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           NL+ ++ +I     AK  D+  ++LH++  +T +V     +  +I GFY    L   AL 
Sbjct: 394 NLITFNTLIDGYCGAKRIDDGMELLHEMT-ETGLVADTTTYNTLIHGFYLVGDL-NAALD 451

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY------------VSPDA 152
           +  EM S  +   +   +TLL+     GKL    E+F++M+K             V PD 
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YNILI G +   +  +A ++++EM  R + P  +T+ ++I GLC + R+DEA ++  D
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF-D 570

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M   +  P+   F +LI G C  G +   L +  EM R  I  +A  Y +LI    K G
Sbjct: 571 SMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVG 630

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             N    I +EM   G  P+++T   +++G   +E+ + A  +L+++
Sbjct: 631 NINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 135/290 (46%), Gaps = 39/290 (13%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVS 149
           GF+   + LE A+ +F +M       +V  F  L+   +   + D +  L+Q ME K + 
Sbjct: 53  GFH-EIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIR 111

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
            D  S+ ILI       +L  A   F ++ K  L P +VTF TL++GLC+E RV EAL L
Sbjct: 112 CDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNL 171

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE-------------- 255
              +      +P+   F +L+ GLC  G +  A+ + + M+ D ++              
Sbjct: 172 FHQMFET-TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMC 230

Query: 256 ----------------------MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
                                  +  IYS++I +L K GR ++   +  EM+E+G  P+ 
Sbjct: 231 KKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDL 290

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            TYN++I GFC    +  A  +L EM ++    + ++YN ++    K+GK
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGK 340


>gi|297803426|ref|XP_002869597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315433|gb|EFH45856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 538

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 140/295 (47%), Gaps = 7/295 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERALQMFD 107
           +D +       K F        Q+K D   +P  +  CN       G+ R+ + AL+ + 
Sbjct: 171 FDSLFKTFAHLKKFRNATDTFMQMK-DYGFLPT-VESCNAYMSSLLGQGRV-DIALRFYR 227

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSR 166
           EM    +       N +++     GKLD+  EL Q ME+        SYN LI G     
Sbjct: 228 EMRRCKISPNTYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATHVSYNTLIAGHCEKG 287

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
            L  A K+ + M K  LQP +VTF TLI+G C  +++ EA K+  + M+  N+ P+   +
Sbjct: 288 LLSSALKLKNMMGKNGLQPNVVTFNTLIHGFCRAVKLQEASKVFGE-MKALNLPPNTVTY 346

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
            +LI G    G+  +A    E+MV + I+ D   Y++LI  L K  +  +    +KE+ +
Sbjct: 347 NTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNTLILGLCKQAKTRKAAQFVKELDK 406

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
               PNS T++ALI G C   + +  F +   M   GC  N  ++N+++   CK+
Sbjct: 407 ENLVPNSSTFSALIMGQCVRRNADRGFELYKSMIRSGCHPNEQTFNILISAFCKN 461



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 151/340 (44%), Gaps = 41/340 (12%)

Query: 11  LPRLQKDPKLALQLF---KNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQ 67
           L ++QKD  L+ + F   K  NP  +  E H +                           
Sbjct: 88  LLKIQKDYLLSFEFFNWAKTRNPASHSLETHAI--------------------------- 120

Query: 68  QILHQLKHDTRIVPKEIIFCNVI---GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124
            +LH L  + +    E I  +V+   G    A++ +  L  + E  S     T + F++L
Sbjct: 121 -VLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSYRECDS-----TPRVFDSL 174

Query: 125 LNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
                   K     + F  M+ Y   P   S N  +   +   R++ A + + EM + ++
Sbjct: 175 FKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKI 234

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P   T   ++ G C   ++D+ ++L +D+ R+   +     + +LI G C  G LS AL
Sbjct: 235 SPNTYTLNMVMSGYCRSGKLDKGIELLQDMERL-GFRATHVSYNTLIAGHCEKGLLSSAL 293

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            +K  M ++ ++ +   +++LI    +A +  E   +  EMK     PN+VTYN LI+G+
Sbjct: 294 KLKNMMGKNGLQPNVVTFNTLIHGFCRAVKLQEASKVFGEMKALNLPPNTVTYNTLINGY 353

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ++ D E AF   ++M   G + + ++YN ++ GLCK  K
Sbjct: 354 SQQGDHEMAFRFYEDMVCNGIQRDILTYNTLILGLCKQAK 393



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 138/305 (45%), Gaps = 41/305 (13%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           + P  Y L   +++++   R+   D+  ++L  ++         + +  +I  +    LL
Sbjct: 234 ISPNTYTL---NMVMSGYCRSGKLDKGIELLQDMER-LGFRATHVSYNTLIAGHCEKGLL 289

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
             AL++ + M    +Q  V  FNTL++      KL    ++F  M+   + P+  +YN L
Sbjct: 290 SSALKLKNMMGKNGLQPNVVTFNTLIHGFCRAVKLQEASKVFGEMKALNLPPNTVTYNTL 349

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G       E A++ +++MV   +Q  ++T+ TLI GLC + +  +A +  +++ +  N
Sbjct: 350 INGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNTLILGLCKQAKTRKAAQFVKELDK-EN 408

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + P+   F++LI G C               VR   +    +Y S+I +           
Sbjct: 409 LVPNSSTFSALIMGQC---------------VRRNADRGFELYKSMIRS----------- 442

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
                    GC PN  T+N LIS FCK EDF+ A  +L EM  +    +  + + +  GL
Sbjct: 443 ---------GCHPNEQTFNILISAFCKNEDFDGAAQVLREMVRRSIPLDSRTVHQVCNGL 493

Query: 339 CKDGK 343
              GK
Sbjct: 494 NHQGK 498


>gi|83744090|gb|ABC42331.1| PPR protein [Oryza sativa Indica Group]
          Length = 506

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 150/300 (50%), Gaps = 3/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-IVPKEIIFCNVIGFYGRARLLERALQ 104
           N+  + +I+  L       E  ++LH +  D    +P  + +  V     +    ++A  
Sbjct: 160 NVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVTDGLLKGGDPDKAYA 219

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV 163
            + EM    +   V  +++++        +D+  E+   M K  V+P+  +Y  L+HG  
Sbjct: 220 TYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFC 279

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            S +L +A K  ++M    ++P +VT+ + +  LC   R  EA K+   +++   +KPD 
Sbjct: 280 SSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVK-RGLKPDI 338

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             ++SL+ G    G L    G+ + MV+  ++ D  ++++LI A  K G+ +E   +  +
Sbjct: 339 TTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSK 398

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M+ +G KPN VTYN LI+G+CK    E A  +  EM   G   N I+YN++L GL + G+
Sbjct: 399 MRHQGLKPNCVTYNTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTGR 458



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 125/297 (42%), Gaps = 50/297 (16%)

Query: 95  RARL----LERALQMFDEMSSFNVQMTVKFFNTLL------NPKLTCGKLDRMKELFQIM 144
           RAR+     E AL +FDE+    +   ++  N  L      NP     + +RM      M
Sbjct: 26  RARVGSGGAEDALDVFDELLRRGIGAPIRSLNGALADVARDNPAAAVSRFNRMARAGASM 85

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
              V+P   +Y ILI  C  + RL+  +     +VK+  +   + F  L+ GLC + R D
Sbjct: 86  ---VTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTD 142

Query: 205 EALKL------------------------------KEDIMRVYNVKPDGQ-------VFA 227
           +A+ +                              +E +  ++ +  DG         ++
Sbjct: 143 DAMDIVLRGMTELGCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYS 202

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           ++  GL   G+   A     EM+  +I  +   YSS+I+AL K    ++   +   M + 
Sbjct: 203 TVTDGLLKGGDPDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKN 262

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
           G  PN  TY +L+ GFC       A   L++M   G + N ++Y+  +  LCK+G+C
Sbjct: 263 GVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRC 319



 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 1/101 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P   +F  +I    +   ++ A+ +F +M    ++     +NTL+N      +++    L
Sbjct: 371 PDHYVFNTLIYASAKQGKVDEAMLVFSKMRHQGLKPNCVTYNTLINGYCKITRMENALAL 430

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           FQ M    VSP+  +YNI++ G   + R   A + + +++K
Sbjct: 431 FQEMVSNGVSPNFITYNIMLQGLFRTGRTGTAKEFYVQIIK 471


>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           origanoides]
          Length = 431

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 139/258 (53%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +    ++  Y R   L+   ++   M +  VQ  V  ++ L+N      K+D   E 
Sbjct: 175 PSVVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEX 234

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCK 294

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L +D M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 295 KGDLKQAHDLIDD-MSMKGLKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDDV 353

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           +Y++LIS L + GR  +   +L+EM     KP++ TY  +I+ FCK+ D      +L EM
Sbjct: 354 VYTALISGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFCKKGDVWKGSKLLKEM 413

Query: 320 GDKGCKANPISYNVILGG 337
              G   + ++YNV++ G
Sbjct: 414 QRDGHAPSVVTYNVLMNG 431



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 133/256 (51%), Gaps = 2/256 (0%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY- 147
           V+ +  + +  +     ++E+       ++ FFN L++     G +   + +F  + K+ 
Sbjct: 113 VLEYLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 172

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   S N L++G +    L++ +++   M+   +QP + T+  LI GLC E ++D+A 
Sbjct: 173 LRPSVVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTYSVLINGLCKESKMDDAN 232

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           +  ++ M V  + P+G  F +LI G C  G + LA  + ++M+   +  D   Y++LI  
Sbjct: 233 EXFDE-MLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYG 291

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L K G   +   ++ +M  +G KP+ +TY  LI G CKE D ++AF     M  +  + +
Sbjct: 292 LCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLD 351

Query: 328 PISYNVILGGLCKDGK 343
            + Y  ++ GLC++G+
Sbjct: 352 DVVYTALISGLCQEGR 367



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 125/242 (51%), Gaps = 2/242 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIH 160
           A  +FD ++ + ++ +V   NTL+N  +  G LD    L  +M    V PD  +Y++LI+
Sbjct: 161 AQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTYSVLIN 220

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     +++DA + FDEM+ + L P  VTF TLI G C   RVD A ++ + ++   ++ 
Sbjct: 221 GLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLS-QSLL 279

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   + +LI GLC  G+L  A  + ++M    ++ D   Y++LI    K G  +     
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDSAFEH 339

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            K M +   + + V Y ALISG C+E     A  +L EM     K +  +Y +I+   CK
Sbjct: 340 RKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFCK 399

Query: 341 DG 342
            G
Sbjct: 400 KG 401


>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
 gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
          Length = 394

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 131/269 (48%), Gaps = 16/269 (5%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + F ++I          +ALQ+F +M    V+     +  ++       KLD   
Sbjct: 10  ITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAA 69

Query: 139 ELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
             F Q+++    PD  +Y +L+H    + + E   ++F+EM+ +   P LVT+ T++ G 
Sbjct: 70  SYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGY 129

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C   R+D+AL L    ++     P G ++++LI GLC           + E  R+  EM 
Sbjct: 130 CKAGRIDQALSLMRR-LKGTGRSPSGSLYSTLIDGLCKHD--------RHEEARELFEMA 180

Query: 258 AG------IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
           AG      +Y+S IS L KAG+ +E  A+  +M E GC P+ V+YN +I   CK+     
Sbjct: 181 AGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSE 240

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCK 340
           A  ++D+  ++ C        V++ GLCK
Sbjct: 241 AKELMDQAMERKCMPGVPVCTVLVDGLCK 269



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 152/321 (47%), Gaps = 6/321 (1%)

Query: 6   IRLACLPRLQKDPKLALQLFKNPNPNPNDT--EAHPLKPFRYNLLHYDLIITKLGRAKMF 63
           ++  CLP       L   LFK           E    K     L+ Y  ++    +A   
Sbjct: 76  VQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRI 135

Query: 64  DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT 123
           D+   ++ +LK   R  P   ++  +I    +    E A ++F EM++ +VQ  V  + +
Sbjct: 136 DQALSLMRRLKGTGR-SPSGSLYSTLIDGLCKHDRHEEARELF-EMAAGDVQ-DVIVYTS 192

Query: 124 LLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR 182
            ++     GKLD  K +  +++E   +PD  SYN++I+      R+ +A ++ D+ ++R+
Sbjct: 193 FISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERK 252

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
             P +     L+ GLC   RV+EA  + E ++   +  P    ++++I GLC    L  A
Sbjct: 253 CMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDA 312

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
             V ++M R     D   Y+++I A  K GR +E   + + M ERGC  + V YN LI G
Sbjct: 313 YIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRG 372

Query: 303 FCKEEDFEAAFTILDEMGDKG 323
           +C+    + A  +++EM  +G
Sbjct: 373 YCRAAKVDEAIAMIEEMAGRG 393



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 145/295 (49%), Gaps = 4/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y +++  L +A  +++  QI  ++       P+ + +  V+  Y +A  +++AL +   +
Sbjct: 87  YTVLVHSLFKACKWEQGHQIFEEMLSKGH-SPELVTYATVVNGYCKAGRIDQALSLMRRL 145

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
                  +   ++TL++      + +  +ELF++    V  D   Y   I G   + +L+
Sbjct: 146 KGTGRSPSGSLYSTLIDGLCKHDRHEEARELFEMAAGDVQ-DVIVYTSFISGLCKAGKLD 204

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           +A  V  +M++    P  V++  +IY LC + RV EA +L +  M      P   V   L
Sbjct: 205 EAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAME-RKCMPGVPVCTVL 263

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGI-YSSLISALFKAGRKNEFPAILKEMKERG 288
           + GLC    +  A  + E M+       + + YS++I  L KA R ++   +L++M+  G
Sbjct: 264 VDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQKMRRAG 323

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C P+ VTY A+I  FCK    + A  +   M ++GC ++ ++YN+++ G C+  K
Sbjct: 324 CVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRGYCRAAK 378



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 90/167 (53%), Gaps = 1/167 (0%)

Query: 174 VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGL 233
           +  EM    + PT+VTFG+LI  LC     ++AL++   ++ +  VKPD  ++  +I  L
Sbjct: 1   LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDM-KVKPDAFLYTVVIGHL 59

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           C + +L LA    E+MV+     D   Y+ L+ +LFKA +  +   I +EM  +G  P  
Sbjct: 60  CKINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPEL 119

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           VTY  +++G+CK    + A +++  +   G   +   Y+ ++ GLCK
Sbjct: 120 VTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCK 166



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 66/130 (50%)

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M+   + P    F SLI+ LC +   + AL +  +M+  K++ DA +Y+ +I  L K  +
Sbjct: 5   MKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINK 64

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +   +  ++M + GC P+ VTY  L+    K   +E    I +EM  KG     ++Y  
Sbjct: 65  LDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYAT 124

Query: 334 ILGGLCKDGK 343
           ++ G CK G+
Sbjct: 125 VVNGYCKAGR 134



 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 31/64 (48%)

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +L EMK  G  P  VT+ +LI   C+      A  I  +M D   K +   Y V++G LC
Sbjct: 1   LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLC 60

Query: 340 KDGK 343
           K  K
Sbjct: 61  KINK 64


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 155/303 (51%), Gaps = 4/303 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  R N++ Y +++        F +M    + +K D  IV   ++F  +I  Y +  +++
Sbjct: 250 KGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDG-IVANCLVFTILIDAYAKRGMMD 308

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILI 159
            A+ +  EM    +   V  ++TL++     G+L D + +  Q++   V P+   Y+ LI
Sbjct: 309 EAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLI 368

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRL-QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
            G      L  A ++  EM+   + +P +  F ++++ +C E RV +A  +  D+++   
Sbjct: 369 QGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIF-DLVKDIG 427

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
            + D  +F +LI G C VGE+  A  V + M+   I  D   Y++L++  FK+GR ++  
Sbjct: 428 ERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGL 487

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            + +EM ++  KP +VTYN ++ G  +     AA  +L EM   G   +  +YN+IL GL
Sbjct: 488 NLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGL 547

Query: 339 CKD 341
           C++
Sbjct: 548 CRN 550



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 158/375 (42%), Gaps = 74/375 (19%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + F  +++ ++ II  L +A+  D  + +L Q+  D  + P ++ + ++I  Y      E
Sbjct: 145 QGFVPDVVTHNSIINALCKARAVDNAELLLRQMV-DNGVPPNKVTYTSMIHGYSTLGRWE 203

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
            A +MF EM+   +   +  +N+ ++     G+     E+F  M  K   P+  +Y IL+
Sbjct: 204 EATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILL 263

Query: 160 HG-------------------------CVVSRRLEDAWK----------VFDEMVKRRLQ 184
           HG                         C+V   L DA+           +  EM  + L 
Sbjct: 264 HGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLS 323

Query: 185 PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
           P + T+ TLI  LC   R+ +A+  K + M    V+P+  V+ SLI+G C  G+L  A  
Sbjct: 324 PDVFTYSTLISALCRMGRLADAVD-KFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKE 382

Query: 245 VKEEMVRDKIE--------------------MDAG----------------IYSSLISAL 268
           +  EM+ + I                     MDA                 ++++LI   
Sbjct: 383 LVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGY 442

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
              G   +  ++L  M   G  P++ TYN L++G+ K    +    +  EM DK  K   
Sbjct: 443 CLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTT 502

Query: 329 ISYNVILGGLCKDGK 343
           ++YN+IL GL + G+
Sbjct: 503 VTYNIILDGLFRAGR 517



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 133/296 (44%), Gaps = 5/296 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERALQMFD 107
           Y +++ +L       +   +L  +  +  +   +++  N +  GF+   ++  +A  ++ 
Sbjct: 82  YAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKI-GKACNLYH 140

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSR 166
           EM        V   N+++N       +D  + L  Q+++  V P+  +Y  +IHG     
Sbjct: 141 EMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLG 200

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           R E+A K+F EM  R L P +V++ + +  LC   R  EA ++    M     +P+   +
Sbjct: 201 RWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYS-MAAKGHRPNIVTY 259

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
             L+ G    G  +  +     M  D I  +  +++ LI A  K G  +E   IL EM+ 
Sbjct: 260 GILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQG 319

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +G  P+  TY+ LIS  C+      A    ++M   G + N + Y+ ++ G C  G
Sbjct: 320 QGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHG 375



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 122/271 (45%), Gaps = 8/271 (2%)

Query: 78  RIVPKEII-FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-- 134
           R+ P  I  +  V+    RAR  E  L  F  +    ++      NT+L   L C K   
Sbjct: 2   RVAPPTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKC-LCCTKRTD 60

Query: 135 DRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR--LQPTLVTFG 191
           D +K L + M E    PDA SY I++       R + A  +   M K      P +VT+ 
Sbjct: 61  DAVKVLLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYN 120

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           T+I+G   E ++ +A  L  ++M+   V PD     S+I  LC    +  A  +  +MV 
Sbjct: 121 TVIHGFFKEGKIGKACNLYHEMMQQGFV-PDVVTHNSIINALCKARAVDNAELLLRQMVD 179

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
           + +  +   Y+S+I      GR  E   + +EM  RG  P+ V++N+ +   CK    + 
Sbjct: 180 NGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKE 239

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           A  I   M  KG + N ++Y ++L G   +G
Sbjct: 240 AAEIFYSMAAKGHRPNIVTYGILLHGYATEG 270



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 107/227 (47%), Gaps = 8/227 (3%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNI 157
           A  +FD +     +  +  FNTL++     G+   M + F +++  +S    PD  +YN 
Sbjct: 416 AHHIFDLVKDIGERSDIIMFNTLIDGYCLVGE---MGKAFSVLDAMISAGIGPDTFTYNT 472

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L++G   S R++D   +F EM  ++++PT VT+  ++ GL    R   A K+  +++   
Sbjct: 473 LVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGC- 531

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
                   +  ++KGLC       A+ + +++    ++ +    +++I++++   R+ E 
Sbjct: 532 GTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEA 591

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
             +   + + G  PN+ TY  +I    KE   E A  +   M   GC
Sbjct: 592 KDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSGC 638



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 134/335 (40%), Gaps = 39/335 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N L + ++I    +  M DE   IL +++    + P    +  +I    R   L  A+  
Sbjct: 290 NCLVFTILIDAYAKRGMMDEAMLILSEMQGQG-LSPDVFTYSTLISALCRMGRLADAVDK 348

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYV-SPDACSYNILIHGCV 163
           F++M    VQ     +++L+    T G L + KEL +++M   +  P+   +N ++H   
Sbjct: 349 FNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSIC 408

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              R+ DA  +FD +     +  ++ F TLI G CL   + +A  +  D M    + PD 
Sbjct: 409 KEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVL-DAMISAGIGPDT 467

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +L+ G    G +   L +  EM   KI+     Y+ ++  LF+AGR      +L E
Sbjct: 468 FTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHE 527

Query: 284 MKERGC-----------------------------------KPNSVTYNALISGFCKEED 308
           M   G                                    K N  T N +I+     + 
Sbjct: 528 MIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQR 587

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            E A  +   + D G   N  +Y +++  L K+G 
Sbjct: 588 REEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGS 622



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 94/196 (47%), Gaps = 2/196 (1%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P   +Y ++++GC  +RR E     F  +++  L+       T++  LC   R D+A+K+
Sbjct: 6   PTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKV 65

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK--IEMDAGIYSSLISA 267
               M      PD   +A ++K LC       AL +   M +++     D   Y+++I  
Sbjct: 66  LLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHG 125

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
            FK G+  +   +  EM ++G  P+ VT+N++I+  CK    + A  +L +M D G   N
Sbjct: 126 FFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPN 185

Query: 328 PISYNVILGGLCKDGK 343
            ++Y  ++ G    G+
Sbjct: 186 KVTYTSMIHGYSTLGR 201



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 99/204 (48%), Gaps = 2/204 (0%)

Query: 142 QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVF-DEMVKRRLQPTLVTFGTLIYGLCLE 200
           +++   +  D  + N ++     ++R +DA KV    M +    P   ++  ++  LC +
Sbjct: 33  RLLRTGLKADKTAANTVLKCLCCTKRTDDAVKVLLRRMTELGCVPDAFSYAIVLKRLCDD 92

Query: 201 LRVDEALKLKEDIMRVYNV-KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
            R  +AL L   + +   V  PD   + ++I G    G++  A  +  EM++     D  
Sbjct: 93  NRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVV 152

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            ++S+I+AL KA   +    +L++M + G  PN VTY ++I G+     +E A  +  EM
Sbjct: 153 THNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREM 212

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             +G   + +S+N  +  LCK G+
Sbjct: 213 TGRGLIPDIVSWNSFMDSLCKHGR 236



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 6/148 (4%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH--DTRIVPKEIIFCNVIGFYGRARL 98
           K  +   + Y++I+  L RA      Q++LH++     T  +P   I   ++    R   
Sbjct: 496 KKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNI---ILKGLCRNNC 552

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNI 157
            + A+ MF ++ + NV+  +   NT++N   T  + +  K+LF  I +  + P+A +Y I
Sbjct: 553 TDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGI 612

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
           +I   +    +E+A  +F  M K    P
Sbjct: 613 MIRNLLKEGSVEEADNMFSSMEKSGCAP 640


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 142/311 (45%), Gaps = 19/311 (6%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L  A   D    +  ++K +  +VP    +  +I  + +  LL++A + FDEM
Sbjct: 483 YSKVIGLLCNASKVDNAFLLFEEMKSN-HVVPDVFTYTILIDSFCKVGLLQQARKWFDEM 541

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
                   V  +  L++  L   K+    ELF++M  +   P+  +Y  LI G   S ++
Sbjct: 542 VRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQI 601

Query: 169 EDAWKVFDEMVKRR----------------LQPTLVTFGTLIYGLCLELRVDEALKLKED 212
           E A +++  M                      P + T+G L+ GLC   +V EA  L  D
Sbjct: 602 EKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLL-D 660

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           +M V   +P+  V+ +LI G C VG+L  A  V  +M       +   YSSLI  LFK  
Sbjct: 661 VMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDK 720

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           R +    +L  M E  C PN + Y  +I G CK    + A+ ++  M +KGC  N ++Y 
Sbjct: 721 RLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYT 780

Query: 333 VILGGLCKDGK 343
            ++ G  K GK
Sbjct: 781 AMIDGFGKAGK 791



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 138/313 (44%), Gaps = 15/313 (4%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---RIVPKEIIFCNVIGFYGRAR 97
           + F+ + + Y  +I+ L  A +F+E    L +++  +    +V   I+ C  +    R R
Sbjct: 293 EEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCL----RKR 348

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYN 156
            L R  ++   M +     + + FN+L++     G      +L + M +    P    YN
Sbjct: 349 QLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYN 408

Query: 157 ILIHGCVVSRRL------EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           ILI G   + +L      E A K + EM+   +    V    L   LC   + ++A  + 
Sbjct: 409 ILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSII 468

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
            ++M    + PD   ++ +I  LC   ++  A  + EEM  + +  D   Y+ LI +  K
Sbjct: 469 REMMSKGFI-PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCK 527

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            G   +      EM   GC PN VTY ALI  + K     +A  + + M  +GC  N ++
Sbjct: 528 VGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVT 587

Query: 331 YNVILGGLCKDGK 343
           Y  ++ G CK G+
Sbjct: 588 YTALIDGHCKSGQ 600



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 134/291 (46%), Gaps = 19/291 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I    +A+      ++   +  +   +P  + +  +I  + ++  +E+A Q+
Sbjct: 549 NVVTYTALIHAYLKARKMSSANELFEMMLSEG-CIPNVVTYTALIDGHCKSGQIEKACQI 607

Query: 106 FDEMSSF----NVQMTVKF------------FNTLLNPKLTCGKLDRMKELFQIME-KYV 148
           +  M       +V M  K             +  L++      K+   ++L  +M  +  
Sbjct: 608 YARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGC 667

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
            P+   Y+ LI G     +L++A  VF +M +R   P + T+ +LI  L  + R+D ALK
Sbjct: 668 EPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALK 727

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           +   ++   +  P+  ++  +I GLC VG+   A  +   M       +   Y+++I   
Sbjct: 728 VLSRMLE-NSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGF 786

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            KAG+ ++   ++++M  +GC PN VTY  LI+  C     + A  +LDEM
Sbjct: 787 GKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEM 837



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 103/252 (40%), Gaps = 41/252 (16%)

Query: 129 LTCGKLDRMKELF--QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
           L CG  DR+ E F  +I ++         N+LI  C  +     A +    +     +P+
Sbjct: 172 LGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPS 231

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
            +T+  L+       R+D A  +  + M       DG      +  LC  G    AL + 
Sbjct: 232 RLTYNALVRVFLEADRLDTAYLVHRE-MSDSGFNMDGYTLGCFVHLLCKAGRWREALALI 290

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY---------- 296
           E   +++ ++D  IY+ +IS L +A    E    L  M+   C PN VTY          
Sbjct: 291 E---KEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRK 347

Query: 297 -------------------------NALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
                                    N+LI  +C+  D+  A+ +L +MGD GC+   + Y
Sbjct: 348 RQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVY 407

Query: 332 NVILGGLCKDGK 343
           N+++GG+C + K
Sbjct: 408 NILIGGICGNEK 419



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 123/275 (44%), Gaps = 7/275 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y  +I +L + K  D   ++L ++  ++   P  II+  +I    +    + A ++
Sbjct: 705 NVYTYSSLIDRLFKDKRLDLALKVLSRMLENS-CAPNVIIYTEMIDGLCKVGKTDEAYRL 763

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
              M        V  +  +++     GK+D+  EL  Q+  K  +P+  +Y +LI+ C  
Sbjct: 764 MSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCA 823

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  L+DA ++ DEM +      +  +  +I G   E  +  +L L ++I     V P   
Sbjct: 824 AGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFII--SLGLLDEIAENVAV-PIIP 880

Query: 225 VFASLIKGLCAVGELSLALGVKEEM--VRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
            +  LI   C  G L LAL + +EM         D  +YSSLI +L  A + ++   +  
Sbjct: 881 AYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYA 940

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           +M +RG  P    +  L+ G  +   +E A  + D
Sbjct: 941 DMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSD 975



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 88/179 (49%), Gaps = 8/179 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEII-FCNVIGFYGRARLLERALQ 104
           N + Y ++I     A + D+  Q+L ++K      PK +  +  VI  + R  ++  +L 
Sbjct: 810 NFVTYRVLINHCCAAGLLDDAHQLLDEMKQ--TYWPKHMAGYRKVIEGFNREFII--SLG 865

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK---YVSPDACSYNILIHG 161
           + DE++       +  +  L++     G+L+   EL + M     Y + D   Y+ LI  
Sbjct: 866 LLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIES 925

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
             ++ +++ A++++ +M+KR   P L  F  L+ GL    R +EAL+L + I ++ +V 
Sbjct: 926 LSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSDCICQMVHVS 984


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 142/311 (45%), Gaps = 19/311 (6%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L  A   D    +  ++K +  +VP    +  +I  + +  LL++A + FDEM
Sbjct: 483 YSKVIGLLCNASKVDNAFLLFEEMKSN-HVVPDVFTYTILIDSFCKVGLLQQARKWFDEM 541

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
                   V  +  L++  L   K+    ELF++M  +   P+  +Y  LI G   S ++
Sbjct: 542 VRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQI 601

Query: 169 EDAWKVFDEMVKRR----------------LQPTLVTFGTLIYGLCLELRVDEALKLKED 212
           E A +++  M                      P + T+G L+ GLC   +V EA  L  D
Sbjct: 602 EKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLL-D 660

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           +M V   +P+  V+ +LI G C VG+L  A  V  +M       +   YSSLI  LFK  
Sbjct: 661 VMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDK 720

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           R +    +L  M E  C PN + Y  +I G CK    + A+ ++  M +KGC  N ++Y 
Sbjct: 721 RLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYT 780

Query: 333 VILGGLCKDGK 343
            ++ G  K GK
Sbjct: 781 AMIDGFGKAGK 791



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 138/313 (44%), Gaps = 15/313 (4%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---RIVPKEIIFCNVIGFYGRAR 97
           + F+ + + Y  +I+ L  A +F+E    L +++  +    +V   I+ C  +    R R
Sbjct: 293 EEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCL----RKR 348

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYN 156
            L R  ++   M +     + + FN+L++     G      +L + M +    P    YN
Sbjct: 349 QLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYN 408

Query: 157 ILIHGCVVSRRL------EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           ILI G   + +L      E A K + EM+   +    V    L   LC   + ++A  + 
Sbjct: 409 ILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSII 468

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
            ++M    + PD   ++ +I  LC   ++  A  + EEM  + +  D   Y+ LI +  K
Sbjct: 469 REMMSKGFI-PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCK 527

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            G   +      EM   GC PN VTY ALI  + K     +A  + + M  +GC  N ++
Sbjct: 528 VGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVT 587

Query: 331 YNVILGGLCKDGK 343
           Y  ++ G CK G+
Sbjct: 588 YTALIDGHCKSGQ 600



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 141/313 (45%), Gaps = 19/313 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I    +A+      ++   +  +   +P  + +  +I  + ++  +E+A Q+
Sbjct: 549 NVVTYTALIHAYLKARKMSSANELFEMMLSEG-CIPNVVTYTALIDGHCKSGQIEKACQI 607

Query: 106 FDEMSSF----NVQMTVKF------------FNTLLNPKLTCGKLDRMKELFQIME-KYV 148
           +  M       +V M  K             +  L++      K+   ++L  +M  +  
Sbjct: 608 YARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGC 667

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
            P+   Y+ LI G     +L++A  VF +M +R   P + T+ +LI  L  + R+D ALK
Sbjct: 668 EPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALK 727

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           +   ++   +  P+  ++  +I GLC VG+   A  +   M       +   Y+++I   
Sbjct: 728 VLSRMLE-NSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGF 786

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            KAG+ ++   ++++M  +GC PN VTY  LI+  C     + A  +LDEM       + 
Sbjct: 787 GKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHM 846

Query: 329 ISYNVILGGLCKD 341
             Y  ++ G  ++
Sbjct: 847 AGYRKVIEGFNRE 859



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 103/252 (40%), Gaps = 41/252 (16%)

Query: 129 LTCGKLDRMKELF--QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
           L CG  DR+ E F  +I ++         N+LI  C  +     A +    +     +P+
Sbjct: 172 LGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPS 231

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
            +T+  L+       R+D A  +  + M       DG      +  LC  G    AL + 
Sbjct: 232 RLTYNALVRVFLEADRLDTAYLVHRE-MSDSGFNMDGYTLGCFVHLLCKAGRWREALALI 290

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY---------- 296
           E   +++ ++D  IY+ +IS L +A    E    L  M+   C PN VTY          
Sbjct: 291 E---KEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRK 347

Query: 297 -------------------------NALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
                                    N+LI  +C+  D+  A+ +L +MGD GC+   + Y
Sbjct: 348 RQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVY 407

Query: 332 NVILGGLCKDGK 343
           N+++GG+C + K
Sbjct: 408 NILIGGICGNEK 419



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 123/275 (44%), Gaps = 7/275 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y  +I +L + K  D   ++L ++  ++   P  II+  +I    +    + A ++
Sbjct: 705 NVYTYSSLIDRLFKDKRLDLALKVLSRMLENS-CAPNVIIYTEMIDGLCKVGKTDEAYRL 763

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
              M        V  +  +++     GK+D+  EL  Q+  K  +P+  +Y +LI+ C  
Sbjct: 764 MSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCA 823

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  L+DA ++ DEM +      +  +  +I G   E  +  +L L ++I     V P   
Sbjct: 824 AGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFII--SLGLLDEIAENVAV-PIIP 880

Query: 225 VFASLIKGLCAVGELSLALGVKEEM--VRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
            +  LI   C  G L LAL + +EM         D  +YSSLI +L  A + ++   +  
Sbjct: 881 AYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYA 940

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           +M +RG  P    +  L+ G  +   +E A  + D
Sbjct: 941 DMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSD 975



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEII-FCNVIGFYGRARLLERALQ 104
           N + Y ++I     A + D+  Q+L ++K      PK +  +  VI  + R  ++  +L 
Sbjct: 810 NFVTYRVLINHCCAAGLLDDAHQLLDEMKQT--YWPKHMAGYRKVIEGFNREFII--SLG 865

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK---YVSPDACSYNILIHG 161
           + DE++       +  +  L++     G+L+   EL + M     Y + D   Y+ LI  
Sbjct: 866 LLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIES 925

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
             ++ +++ A++++ +M+KR   P L  F  L+ GL    R +EAL+L + I
Sbjct: 926 LSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSDCI 977


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 145/312 (46%), Gaps = 20/312 (6%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L  A   ++  Q+  ++K +  I P    +  ++  + +  L+E+A   FDEM
Sbjct: 125 YSKVIGYLCNASKVEKAFQLFQEMKRNG-ITPDVYTYTTLLDRFCKVGLIEQARNWFDEM 183

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
                   V  +  L++  L   KL R  E+F++M      P+  +Y  LI G   +   
Sbjct: 184 QQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGET 243

Query: 169 EDAWKVFDEMVKRRL-----------------QPTLVTFGTLIYGLCLELRVDEALKLKE 211
           E A +++  M   ++                 +P +VT+G L+ GLC   +V EA  L E
Sbjct: 244 EKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLE 303

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
             M +   +P+  ++ +LI G C VG+L  A  V  +M+      +   YSSLI  LFK 
Sbjct: 304 -TMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKD 362

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
            R +    +L +M E  C PN V Y  ++ G CK    + A+ ++  M +KGC  N ++Y
Sbjct: 363 KRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTY 422

Query: 332 NVILGGLCKDGK 343
             ++ G  K G+
Sbjct: 423 TAMIDGFGKAGR 434



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 137/281 (48%), Gaps = 17/281 (6%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           +P    +  VIG+   A  +E+A Q+F EM    +   V  + TLL+     G +++ + 
Sbjct: 119 IPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARN 178

Query: 140 LFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            F  M++   +P+  +Y  LIH  + +R+L  A ++F+ M+     P +VT+  LI G C
Sbjct: 179 WFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHC 238

Query: 199 LELRVDEAL----KLKEDIMRVYNV------------KPDGQVFASLIKGLCAVGELSLA 242
                ++A     ++K D + + +V            +P+   + +L+ GLC   ++  A
Sbjct: 239 KAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEA 298

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
             + E M  +  E +  IY +LI    K G+ +E   +  +M   GC PN  TY++LI  
Sbjct: 299 RDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDK 358

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             K++  + A  +L +M +  C  N + Y  ++ GLCK GK
Sbjct: 359 LFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGK 399



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 128/291 (43%), Gaps = 26/291 (8%)

Query: 47  LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMF 106
           L+H  L   KL RA    EM             VP  + +  +I  + +A   E+A Q++
Sbjct: 198 LIHAYLKTRKLSRANEIFEMML-------SNGCVPNIVTYTALIDGHCKAGETEKACQIY 250

Query: 107 DEMSSFNVQM-----------------TVKFFNTLLNPKLTCGKLDRMKELFQIME-KYV 148
             M +  V +                  V  +  L++      K+   ++L + M  +  
Sbjct: 251 ARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGC 310

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
            P+   Y+ LI G     +L++A +VF +M+     P + T+ +LI  L  + R+D ALK
Sbjct: 311 EPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALK 370

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           +   ++   +  P+  ++  ++ GLC VG+   A  +   M       +   Y+++I   
Sbjct: 371 VLTKMLE-NSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGF 429

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            KAGR +    +L+ M  +GC PN +TY  LI+  C     + A  +L+EM
Sbjct: 430 GKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEM 480



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 7/200 (3%)

Query: 150 PDACSYNILIHGCVVSRRLED------AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
           P    YNILI G   +  L        A + ++EM++  +    V        LC   + 
Sbjct: 44  PGYVVYNILIGGICSTEDLPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKF 103

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
           ++A  +  ++M      PD   ++ +I  LC   ++  A  + +EM R+ I  D   Y++
Sbjct: 104 EKAYNVIREMMS-KGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTT 162

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           L+    K G   +      EM++ GC PN VTY ALI  + K      A  I + M   G
Sbjct: 163 LLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNG 222

Query: 324 CKANPISYNVILGGLCKDGK 343
           C  N ++Y  ++ G CK G+
Sbjct: 223 CVPNIVTYTALIDGHCKAGE 242



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 119/286 (41%), Gaps = 13/286 (4%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
            H   P   N+  Y  +I KL + K  D   ++L ++  ++   P  +I+  ++    + 
Sbjct: 342 GHGCSP---NVYTYSSLIDKLFKDKRLDLALKVLTKMLENS-CAPNVVIYTEMVDGLCKV 397

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSY 155
              + A ++   M        V  +  +++     G++DR  EL Q+M  K  +P+  +Y
Sbjct: 398 GKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITY 457

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL--KLKEDI 213
            +LI+ C  +  L+DA K+ +EM +      +  +  +I G   E      L  +L ED 
Sbjct: 458 RVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHEFVASLGLLAELSED- 516

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
                  P   V+  LI      G L +AL + EE+           Y SLI +L  A +
Sbjct: 517 ----GSVPILPVYKLLIDNFIKAGRLEMALELHEELSSFSAAYQ-NTYVSLIESLTLACK 571

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            ++   +  +M  RG  P       LI G  +   +E A  + D +
Sbjct: 572 VDKAFKLYSDMTRRGFVPELSMLVCLIKGLLRVGKWEEALQLSDSI 617



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 120/290 (41%), Gaps = 8/290 (2%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ-LKHDTRIVPKEIIFCNVIGFYG 94
           E   L+    N + YD +I    +    DE Q++  + L H     P    + ++I    
Sbjct: 303 ETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCS--PNVYTYSSLIDKLF 360

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDAC 153
           + + L+ AL++  +M   +    V  +  +++     GK D    L  +ME K   P+  
Sbjct: 361 KDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVV 420

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +Y  +I G   + R++   ++   M  +   P  +T+  LI   C    +D+A KL E++
Sbjct: 421 TYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEM 480

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
            + Y  K  G ++  +I+G     E   +LG+  E+  D       +Y  LI    KAGR
Sbjct: 481 KQTYWPKHIG-MYRKVIEGFSH--EFVASLGLLAELSEDGSVPILPVYKLLIDNFIKAGR 537

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
             E    L E           TY +LI         + AF +  +M  +G
Sbjct: 538 L-EMALELHEELSSFSAAYQNTYVSLIESLTLACKVDKAFKLYSDMTRRG 586



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 87/183 (47%), Gaps = 7/183 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI-IFCNVIGFYGRARLLERALQ 104
           N + Y ++I     A + D+  ++L ++K      PK I ++  VI   G +     +L 
Sbjct: 453 NFITYRVLINHCCAAGLLDDAHKLLEEMKQTYW--PKHIGMYRKVIE--GFSHEFVASLG 508

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           +  E+S       +  +  L++  +  G+L+   EL + +  + +    +Y  LI    +
Sbjct: 509 LLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEELSSFSAAYQNTYVSLIESLTL 568

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--MRVYNVKPD 222
           + +++ A+K++ +M +R   P L     LI GL    + +EAL+L + I  M ++ V+ +
Sbjct: 569 ACKVDKAFKLYSDMTRRGFVPELSMLVCLIKGLLRVGKWEEALQLSDSICQMDIHWVQQE 628

Query: 223 GQV 225
             V
Sbjct: 629 QTV 631



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 34/56 (60%)

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           M   GC P+ + +N+L+  +C+  D+  A+ +L +M   G +   + YN+++GG+C
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGIC 57


>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 950

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 158/335 (47%), Gaps = 52/335 (15%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS 110
           DLII KL +   F+   ++L +LK+    +  E  F  +I  Y  A + E+A++ F  M 
Sbjct: 97  DLIIGKLIKENAFELYWKVLQELKNSAIKISSEA-FSVLIEAYSEAGMDEKAVESFSLMR 155

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMKELF--------QIMEKYVSPDACSYNILIHGC 162
            F+ +  +  FN +L+  +        KE F        Q+++  ++PD  +Y ILIHG 
Sbjct: 156 DFDCKPDLFAFNLILHFLVR-------KEAFLLALAVYNQMLKCNLNPDVVTYGILIHGL 208

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             + + +DA  +FDEM  R + P  + +  ++ GLC   ++ +A +L    MR      D
Sbjct: 209 CKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSK-MRASGCNRD 267

Query: 223 GQVFASLIKGLCAVGELSLA-------------LGV----------------------KE 247
              +  L+ G C  G L  A             LGV                       +
Sbjct: 268 LITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQ 327

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           +M+R+ I+ D  +Y+ +I  L + GR  E   +L EM ERG +P+++ YNALI GFC   
Sbjct: 328 KMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMG 387

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             + A ++  E+    C  N  +Y++++ G+CK+G
Sbjct: 388 YLDEAESLRLEISKHDCFPNNHTYSILICGMCKNG 422



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 131/259 (50%), Gaps = 10/259 (3%)

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
           +FDEM         D  I+P +II+  V+    +A+ +  A ++F +M +      +  +
Sbjct: 220 LFDEMT--------DRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITY 271

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           N LLN     G LD    L Q++ K         Y  LI+G   +RR E+A   + +M++
Sbjct: 272 NVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLR 331

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
             ++P ++ +  +I GL  E RV EAL L  + M    ++PD   + +LIKG C +G L 
Sbjct: 332 ENIKPDVMLYTIMIRGLSQEGRVTEALTLLGE-MTERGLRPDTICYNALIKGFCDMGYLD 390

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  ++ E+ +     +   YS LI  + K G  N+   I KEM++ GC P+ VT+N+LI
Sbjct: 391 EAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLI 450

Query: 301 SGFCKEEDFEAAFTILDEM 319
           +G CK    E A  +  +M
Sbjct: 451 NGLCKANRLEEARLLFYQM 469



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 143/299 (47%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L  ++LI+  L R + F     + +Q+     + P  + +  +I    +    + AL +
Sbjct: 162 DLFAFNLILHFLVRKEAFLLALAVYNQMLK-CNLNPDVVTYGILIHGLCKTCKTQDALVL 220

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           FDEM+   +      ++ +L+      K+   + LF  M     + D  +YN+L++G   
Sbjct: 221 FDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCK 280

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S  L+DA+ +   + K      ++ +G LI GL    R +EA    + ++R  N+KPD  
Sbjct: 281 SGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLR-ENIKPDVM 339

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++  +I+GL   G ++ AL +  EM    +  D   Y++LI      G  +E  ++  E+
Sbjct: 340 LYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEI 399

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +  C PN+ TY+ LI G CK      A  I  EM   GC  + +++N ++ GLCK  +
Sbjct: 400 SKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANR 458



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 144/313 (46%), Gaps = 24/313 (7%)

Query: 47  LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQM 105
           ++ Y  +I  L RA+ ++E      ++  +  I P  +++  +I G     R+ E AL +
Sbjct: 303 VIGYGCLINGLFRARRYEEAHMWYQKMLREN-IKPDVMLYTIMIRGLSQEGRVTE-ALTL 360

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIHGCVV 164
             EM+   ++     +N L+      G LD  + L  +I +    P+  +Y+ILI G   
Sbjct: 361 LGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCK 420

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA----------------LK 208
           +  +  A  +F EM K    P++VTF +LI GLC   R++EA                L+
Sbjct: 421 NGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSLFLR 480

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           L +   +V+++         +++ LC  G +  A  +  ++V   +  D   Y+ LI+  
Sbjct: 481 LSQGTDKVFDIAS----LQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGF 536

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K G  N    + KEM+ +G  P+SVTY  LI G  +    E A  I ++M  KGC    
Sbjct: 537 CKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPES 596

Query: 329 ISYNVILGGLCKD 341
            +Y  I+   C++
Sbjct: 597 STYKTIMTWSCRE 609



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 3/242 (1%)

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYN 156
           ++ +A ++  ++    V   ++ +N L+N     G ++   +LF+ M+ K   PD+ +Y 
Sbjct: 506 MILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYG 565

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            LI G   + R EDA ++F++MVK+   P   T+ T++   C E  +  AL +    +R 
Sbjct: 566 TLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMKYLRD 625

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           +    D +V   ++       EL  A+    EM       D   Y+  +  L +A R  E
Sbjct: 626 FRGWEDEKV--RVVAESFDNEELQTAIRRLLEMDIKSKNFDLAPYTIFLIGLVQAKRDCE 683

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
             AI   +K+     +S +   LI   C  E+ + A  +     ++G +  P   N +L 
Sbjct: 684 AFAIFSVLKDFKMNISSASCVMLIGRLCMVENLDMAMDVFLFTLERGFRLMPPICNQLLC 743

Query: 337 GL 338
            L
Sbjct: 744 NL 745



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 4/117 (3%)

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I  L       L   V +E+    I++ +  +S LI A  +AG   +       M++  
Sbjct: 99  IIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSLMRDFD 158

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP--ISYNVILGGLCKDGK 343
           CKP+   +N ++    ++E F  A  + ++M    C  NP  ++Y +++ GLCK  K
Sbjct: 159 CKPDLFAFNLILHFLVRKEAFLLALAVYNQM--LKCNLNPDVVTYGILIHGLCKTCK 213


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 132/244 (54%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y +  +L+   ++ + M +   Q  V  ++ L+N      K+D   EL
Sbjct: 169 PSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHEL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++EK + P+  ++  LI G   + +L+ A +++ +++ + L P L+T+ TLIYG C 
Sbjct: 229 FDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +   L ++ M +  +KPD   + +LI G C  G+L  A   +++M+ + I +D  
Sbjct: 289 KGDLKQTRDLIDE-MSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           +Y++LIS L K GR  +   +L+EM   G KP+S TY  +++ FCK  D      +L EM
Sbjct: 348 VYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEM 407

Query: 320 GDKG 323
              G
Sbjct: 408 QRDG 411



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 127/228 (55%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M     QP + T+  LI GLC E ++DEA +L ++++    + P+G  F +LI G C 
Sbjct: 195 NAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEK-GLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G+L LA+ + ++++   +  D   Y++LI    K G   +   ++ EM  +G KP+ +T
Sbjct: 254 NGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF    +M ++  + + + Y  ++ GLCK+G+
Sbjct: 314 YTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGR 361



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 135/267 (50%), Gaps = 9/267 (3%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ + ++ +V  FNTL+N  +  G LD 
Sbjct: 133 PASLYFFNILMHRFCKEGEIRL---AQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M      PD  +Y++LI+G     ++++A ++FDEM+++ L P  VTF TLI 
Sbjct: 190 GFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   ++D A+++ + I+    + PD   + +LI G C  G+L     + +EM    ++
Sbjct: 250 GHCKNGKLDLAMEIYKQILS-QGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLK 308

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI    K G         K+M E   + + V Y ALISG CKE     A  +
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKM 368

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
           L EM   G K +  +Y +++   CK+G
Sbjct: 369 LREMLSVGLKPDSGTYTIVMNEFCKNG 395



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 2/222 (0%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           H +   P    +  +I    +   ++ A ++FDEM    +      F TL++     GKL
Sbjct: 198 HASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKL 257

Query: 135 DRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           D   E++ QI+ + +SPD  +YN LI+G      L+    + DEM  + L+P  +T+ TL
Sbjct: 258 DLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTL 317

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G C E  ++ A + ++ ++   N++ D  V+ +LI GLC  G    A  +  EM+   
Sbjct: 318 IDGSCKEGDLETAFEYRKKMIEE-NIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVG 376

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
           ++ D+G Y+ +++   K G  N    +LKEM+  G  P+ VT
Sbjct: 377 LKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDGHVPSVVT 418


>gi|15237345|ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16420, mitochondrial; Flags: Precursor
 gi|9759124|dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332004907|gb|AED92290.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 535

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 168/340 (49%), Gaps = 12/340 (3%)

Query: 7   RLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEM 66
           RL  +   Q++  LALQ+F          ++HP   F +N   Y  I+ KL RA+ FD +
Sbjct: 51  RLVSMITQQQNIDLALQIFLYAG------KSHP--GFTHNYDTYHSILFKLSRARAFDPV 102

Query: 67  QQILHQLKHD-TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125
           + ++  L++    I   E +F +++  YG A   E ++++F  +  F V+ +V+  NTLL
Sbjct: 103 ESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLL 162

Query: 126 NPKLTCGKLDRMKELFQIMEKY--VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
           N  +   + D +  +F+  ++   ++P+  + N+L+        +E A+KV DE+    L
Sbjct: 163 NVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGL 222

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P LVT+ T++ G      ++ A ++ E+++      PD   +  L+ G C +G  S A 
Sbjct: 223 VPNLVTYTTILGGYVARGDMESAKRVLEEMLD-RGWYPDATTYTVLMDGYCKLGRFSEAA 281

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            V ++M +++IE +   Y  +I AL K  +  E   +  EM ER   P+S     +I   
Sbjct: 282 TVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDAL 341

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C++   + A  +  +M    C  +    + ++  LCK+G+
Sbjct: 342 CEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGR 381



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 147/312 (47%), Gaps = 7/312 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           N  E+  + P   N+   +L++  L +    +   ++L ++     +VP  + +  ++G 
Sbjct: 180 NSKESFGITP---NIFTCNLLVKALCKKNDIESAYKVLDEIP-SMGLVPNLVTYTTILGG 235

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPD 151
           Y     +E A ++ +EM           +  L++     G+      +   MEK  + P+
Sbjct: 236 YVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPN 295

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +Y ++I      ++  +A  +FDEM++R   P       +I  LC + +VDEA  L  
Sbjct: 296 EVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWR 355

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            +++  N  PD  + ++LI  LC  G ++ A  + +E  +  I      Y++LI+ + + 
Sbjct: 356 KMLK-NNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSIP-SLLTYNTLIAGMCEK 413

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G   E   +  +M ER CKPN+ TYN LI G  K  + +    +L+EM + GC  N  ++
Sbjct: 414 GELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTF 473

Query: 332 NVILGGLCKDGK 343
            ++  GL K GK
Sbjct: 474 LILFEGLQKLGK 485



 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 6/161 (3%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           +P   +   +I +  +   +  A ++FDE    ++  ++  +NTL+      G+L     
Sbjct: 363 MPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSIP-SLLTYNTLIAGMCEKGELTEAGR 421

Query: 140 LFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L+  M E+   P+A +YN+LI G   +  +++  +V +EM++    P   TF  L  GL 
Sbjct: 422 LWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQ 481

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
              + ++A+K+    M V N K D + +   +K     GEL
Sbjct: 482 KLGKEEDAMKIVS--MAVMNGKVDKESWELFLKKF--AGEL 518


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 134/269 (49%), Gaps = 13/269 (4%)

Query: 87  CN-VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145
           CN VIG + R    + A+ ++ +M    + + +  FN L+     C KL      F  + 
Sbjct: 109 CNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLT 168

Query: 146 KY-VSPDACSYNILIHGCVVSRRLEDAW----------KVFDEMVKRRLQPTLVTFGTLI 194
           K    PD  ++N L+HG  +  R+ +A            +FD+MV+  L P ++TF TLI
Sbjct: 169 KLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLI 228

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
            GLCLE RV EA  L    M    +  D   + +++ G+C +G+   AL +  +M    I
Sbjct: 229 NGLCLEGRVLEAAALVNK-MVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHI 287

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           + D  IYS++I  L K G  ++   +  EM E+G  PN  TYN +I GFC    +  A  
Sbjct: 288 KPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQR 347

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +L +M ++    + +++N ++    K+GK
Sbjct: 348 LLRDMIEREINPDVLTFNALISASVKEGK 376



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 159/366 (43%), Gaps = 58/366 (15%)

Query: 17  DPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD 76
           D K AL L           E   +KP   +++ Y  II +L +     + Q +  ++  +
Sbjct: 271 DTKSALNLLSK-------MEETHIKP---DVVIYSAIIDRLCKDGHHSDAQYLFSEML-E 319

Query: 77  TRIVPKEIIF-CNVIGF--YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133
             I P    + C + GF  +GR    +R L+   +M    +   V  FN L++  +  GK
Sbjct: 320 KGIAPNVFTYNCMIDGFCSFGRWSDAQRLLR---DMIEREINPDVLTFNALISASVKEGK 376

Query: 134 LDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           L   ++L  +++ + + PD  +YN +I+G     R +DA  +FD M      P +VTF T
Sbjct: 377 LFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNT 432

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR- 251
           +I   C   RVDE ++L  +I R   +  +   + +LI G C V  L+ A  + +EM+  
Sbjct: 433 IIDVYCRAKRVDEGMQLLREISR-RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISH 491

Query: 252 ----------------------------------DKIEMDAGIYSSLISALFKAGRKNEF 277
                                              KI++D   Y+ +I  + K  + +E 
Sbjct: 492 GVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEA 551

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +   +   G +P+  TYN +ISGFC +     A  +  +M D G + +  +YN ++ G
Sbjct: 552 WDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRG 611

Query: 338 LCKDGK 343
             K G+
Sbjct: 612 CLKAGE 617



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 141/293 (48%), Gaps = 9/293 (3%)

Query: 52  LIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111
           LI   +   K+F E +++  ++ H   I P  + + ++I  + +    + A  MFD M+S
Sbjct: 367 LISASVKEGKLF-EAEKLCDEMLHRC-IFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS 424

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVVSRRLED 170
            +V      FNT+++      ++D  M+ L +I  + +  +  +YN LIHG      L  
Sbjct: 425 PDVVT----FNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNA 480

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           A  +F EM+   + P  +T   L+YG C   +++EAL+L E ++++  +  D   +  +I
Sbjct: 481 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFE-VIQMSKIDLDTVAYNIII 539

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
            G+C   ++  A  +   +    +E D   Y+ +IS        ++   +  +MK+ G +
Sbjct: 540 HGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHE 599

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           P++ TYN LI G  K  + + +  ++ EM   G   +  +  ++   L  DG+
Sbjct: 600 PDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMV-ADLITDGR 651



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 138/314 (43%), Gaps = 52/314 (16%)

Query: 74  KHDTRIVPKEIIFCNV-IGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132
           K + R +P  I   N+ I  +     L  +L  F +++    Q  V  FNTLL+      
Sbjct: 131 KMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLED 190

Query: 133 KLDRMKELF-----------QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
           ++     LF           Q++E  ++P   ++N LI+G  +  R+ +A  + ++MV +
Sbjct: 191 RISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGK 250

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS------------- 228
            L   +VT+GT++ G+C       AL L    M   ++KPD  ++++             
Sbjct: 251 GLHIDVVTYGTIVNGMCKMGDTKSALNLLSK-MEETHIKPDVVIYSAIIDRLCKDGHHSD 309

Query: 229 ----------------------LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266
                                 +I G C+ G  S A  +  +M+  +I  D   +++LIS
Sbjct: 310 AQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALIS 369

Query: 267 ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326
           A  K G+  E   +  EM  R   P++VTYN++I GFCK   F+ A  + D M       
Sbjct: 370 ASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SP 425

Query: 327 NPISYNVILGGLCK 340
           + +++N I+   C+
Sbjct: 426 DVVTFNTIIDVYCR 439


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 157/299 (52%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y  ++  L +    D    +L +++   +I    +I+  +I    + + ++ A  +
Sbjct: 219 DLVTYGAVVNGLCKRGDIDLALSLLKKMEKG-KIEADVVIYNTIIDGLCKYKHIDDAFAL 277

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           F++M +  ++  V  +N+L++     G+  D  + L  ++E+ ++P+  +++ LI   V 
Sbjct: 278 FNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVK 337

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L +A K++DEM+KR + P + T+ +LI G C+  R+DEA  + E +M   +  P+  
Sbjct: 338 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE-LMISKDCFPNVV 396

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LIKG C    +   + +  EM +  +  +   Y++LI  LF+AG  +    I K+M
Sbjct: 397 TYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM 456

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  P+ +TY+ L+ G CK    E A  + + +     + +  +YN+++ G+CK GK
Sbjct: 457 VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGK 515



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 157/311 (50%), Gaps = 6/311 (1%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           N  E   ++P   ++  Y+ +I+ L     + +  ++L  +  + +I P  + F  +I  
Sbjct: 279 NKMETKGIRP---DVFTYNSLISCLCNYGRWSDASRLLSNMI-ERKINPNVVTFSALIDA 334

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPD 151
           + +   L  A +++DEM   ++   +  +++L+N      +LD  K +F++M  K   P+
Sbjct: 335 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 394

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +YN LI G   ++R+E+  ++F EM +R L    VT+ TLI GL      D A K+ +
Sbjct: 395 VVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 454

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
             M    V PD   ++ L+ GLC  G+L  AL V E + + K+E D   Y+ +I  + KA
Sbjct: 455 K-MVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKA 513

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G+  +   +   +  +G KPN + Y  +ISGFC++   E A  +  EM + G   +   Y
Sbjct: 514 GKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCY 573

Query: 332 NVILGGLCKDG 342
           N ++    +DG
Sbjct: 574 NTLIRARLRDG 584



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 133/266 (50%), Gaps = 4/266 (1%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F  +I G +   +  E A+ + D+M     Q  +  +  ++N     G +D    
Sbjct: 183 PDTVTFNTLIHGLFLHNKASE-AVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALS 241

Query: 140 LFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L + MEK  +  D   YN +I G    + ++DA+ +F++M  + ++P + T+ +LI  LC
Sbjct: 242 LLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLC 301

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              R  +A +L  +++    + P+   F++LI      G+L  A  + +EM++  I+ D 
Sbjct: 302 NYGRWSDASRLLSNMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             YSSLI+      R +E   + + M  + C PN VTYN LI GFCK +  E    +  E
Sbjct: 361 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFRE 420

Query: 319 MGDKGCKANPISYNVILGGLCKDGKC 344
           M  +G   N ++YN ++ GL + G C
Sbjct: 421 MSQRGLVGNTVTYNTLIQGLFQAGDC 446



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 129/246 (52%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           L+ A+ +F EM       ++  FN LL+      K D +  L + M+   +S D  SYNI
Sbjct: 61  LDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+      +L  A  V  +M+K   +P +VT  +L+ G C   R+ +A+ L + ++ + 
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM- 179

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             KPD   F +LI GL    + S A+ + ++MV+   + D   Y ++++ L K G  +  
Sbjct: 180 GYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLA 239

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            ++LK+M++   + + V YN +I G CK +  + AF + ++M  KG + +  +YN ++  
Sbjct: 240 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISC 299

Query: 338 LCKDGK 343
           LC  G+
Sbjct: 300 LCNYGR 305



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 118/246 (47%), Gaps = 39/246 (15%)

Query: 132 GKLDRMKELFQIMEKYVSPDACSYNI---LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
            +L +   LF +   Y S  A SY+    L    +++ +L+DA  +F EMV+ R  P++V
Sbjct: 24  AQLRKASPLFSLRGVYFS--AASYDYREKLSRNALLNLKLDDAIGLFGEMVQSRPLPSIV 81

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRV--------YNV--------------------- 219
            F  L+  +    + D  + L E +  +        YN+                     
Sbjct: 82  EFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKM 141

Query: 220 -----KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
                +PD    +SL+ G C    +S A+ + ++MV    + D   +++LI  LF   + 
Sbjct: 142 MKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKA 201

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +E  A++ +M +RGC+P+ VTY A+++G CK  D + A ++L +M     +A+ + YN I
Sbjct: 202 SEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTI 261

Query: 335 LGGLCK 340
           + GLCK
Sbjct: 262 IDGLCK 267


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 148/304 (48%), Gaps = 6/304 (1%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           E H +KP   +++ Y+ II  L + K+  +   +  ++     I P  + +  +I  +  
Sbjct: 189 EGHSVKP---DVVMYNTIINSLCKNKLLGDACDVYSEMIVKG-ISPDVVTYTTLIHGFCI 244

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACS 154
              L+ A  + +EM   N+   V  FN L++     GK+   K L  +M K  + PD  +
Sbjct: 245 MGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFT 304

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YN LI G  +   ++ A  VF  M +R + P +  +  +I GLC    VDEA+ L E+ M
Sbjct: 305 YNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEE-M 363

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           +  N+ PD   + SLI GLC    L  A+ + + M    I+ D   Y+ L+  L K+GR 
Sbjct: 364 KHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRL 423

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            +   I + +  +G   N   Y  LI+  CK   F+ A  +  +M DKGC  + +++++I
Sbjct: 424 EDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDII 483

Query: 335 LGGL 338
           +  L
Sbjct: 484 IRAL 487



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 131/252 (51%), Gaps = 7/252 (2%)

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL--DRMKELFQIMEKYVSPD 151
           G  + + R L+   ++   +V+  V  +NT++N  L   KL  D      +++ K +SPD
Sbjct: 176 GETKAVARLLR---KLEGHSVKPDVVMYNTIIN-SLCKNKLLGDACDVYSEMIVKGISPD 231

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +Y  LIHG  +   L++A+ + +EM  + + P + TF  LI  L  E ++ EA K+  
Sbjct: 232 VVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEA-KILL 290

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            +M    +KPD   + SLI G   V E+  A  V   M +  +  D   Y+++I+ L K 
Sbjct: 291 AVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKT 350

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
              +E  ++ +EMK +   P+ VTYN+LI G CK    E A  +   M ++G + +  SY
Sbjct: 351 KMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSY 410

Query: 332 NVILGGLCKDGK 343
            ++L GLCK G+
Sbjct: 411 TILLDGLCKSGR 422



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 143/303 (47%), Gaps = 7/303 (2%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ + + Y  +I  L +      + ++L +L+  + + P  +++  +I    + +LL  A
Sbjct: 158 FQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHS-VKPDVVMYNTIINSLCKNKLLGDA 216

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHG 161
             ++ EM    +   V  + TL++     G L     L   M+ K ++P+ C++NILI  
Sbjct: 217 CDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDA 276

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--MRVYNV 219
                ++++A  +   M+K  ++P + T+ +LI G  L   VDE    K     M    V
Sbjct: 277 LSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFL---VDEVKHAKYVFYSMAQRGV 333

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD Q + ++I GLC    +  A+ + EEM    +  D   Y+SLI  L K        A
Sbjct: 334 TPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIA 393

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + K MKE+G +P+  +Y  L+ G CK    E A  I   +  KG   N  +Y V++  LC
Sbjct: 394 LCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLC 453

Query: 340 KDG 342
           K G
Sbjct: 454 KAG 456



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 8/242 (3%)

Query: 109 MSSFNVQMTVK------FFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHG 161
           ++SFN+ + ++       FN +L+  +       +  LF+  E   ++PD C+ +ILI+ 
Sbjct: 42  VASFNLMLLMRPPPPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINC 101

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 +  A+ VF  ++KR   P  +T  TLI GLC    + +AL    D +     + 
Sbjct: 102 FCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYF-HDQLVAQGFQL 160

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +LI GLC  GE      +  ++    ++ D  +Y+++I++L K     +   + 
Sbjct: 161 DQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVY 220

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM  +G  P+ VTY  LI GFC     + AF++L+EM  K    N  ++N+++  L K+
Sbjct: 221 SEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKE 280

Query: 342 GK 343
           GK
Sbjct: 281 GK 282


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 142/311 (45%), Gaps = 19/311 (6%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L  A   D    +  ++K +  +VP    +  +I  + +  LL++A + FDEM
Sbjct: 483 YSKVIGLLCNASKVDNAFLLFEEMKSN-HVVPDVFTYTILIDSFCKVGLLQQARKWFDEM 541

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
                   V  +  L++  L   K+    ELF++M  +   P+  +Y  LI G   S ++
Sbjct: 542 VRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQI 601

Query: 169 EDAWKVFDEMVKRR----------------LQPTLVTFGTLIYGLCLELRVDEALKLKED 212
           E A +++  M                      P + T+G L+ GLC   +V EA  L  D
Sbjct: 602 EKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLL-D 660

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           +M V   +P+  V+ +LI G C VG+L  A  V  +M       +   YSSLI  LFK  
Sbjct: 661 VMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDK 720

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           R +    +L  M E  C PN + Y  +I G CK    + A+ ++  M +KGC  N ++Y 
Sbjct: 721 RLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYT 780

Query: 333 VILGGLCKDGK 343
            ++ G  K GK
Sbjct: 781 AMIDGFGKAGK 791



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 138/313 (44%), Gaps = 15/313 (4%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---RIVPKEIIFCNVIGFYGRAR 97
           + F+ + + Y  +I+ L  A +F+E    L +++  +    +V   I+ C  +    R R
Sbjct: 293 EEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCL----RKR 348

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYN 156
            L R  ++   M +     + + FN+L++     G      +L + M +    P    YN
Sbjct: 349 QLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYN 408

Query: 157 ILIHGCVVSRRL------EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           ILI G   + +L      E A K + EM+   +    V    L   LC   + ++A  + 
Sbjct: 409 ILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSII 468

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
            ++M    + PD   ++ +I  LC   ++  A  + EEM  + +  D   Y+ LI +  K
Sbjct: 469 REMMSKGFI-PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCK 527

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            G   +      EM   GC PN VTY ALI  + K     +A  + + M  +GC  N ++
Sbjct: 528 VGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVT 587

Query: 331 YNVILGGLCKDGK 343
           Y  ++ G CK G+
Sbjct: 588 YTALIDGHCKSGQ 600



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 134/291 (46%), Gaps = 19/291 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I    +A+      ++   +  +   +P  + +  +I  + ++  +E+A Q+
Sbjct: 549 NVVTYTALIHAYLKARKMSSANELFEMMLSEG-CIPNVVTYTALIDGHCKSGQIEKACQI 607

Query: 106 FDEMSSF----NVQMTVKF------------FNTLLNPKLTCGKLDRMKELFQIME-KYV 148
           +  M       +V M  K             +  L++      K+   ++L  +M  +  
Sbjct: 608 YARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGC 667

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
            P+   Y+ LI G     +L++A  VF +M +R   P + T+ +LI  L  + R+D ALK
Sbjct: 668 EPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALK 727

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           +   ++   +  P+  ++  +I GLC VG+   A  +   M       +   Y+++I   
Sbjct: 728 VLSRMLE-NSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGF 786

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            KAG+ ++   ++++M  +GC PN VTY  LI+  C     + A  +LDEM
Sbjct: 787 GKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEM 837



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 103/252 (40%), Gaps = 41/252 (16%)

Query: 129 LTCGKLDRMKELF--QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
           L CG  DR+ E F  +I ++         N+LI  C  +     A +    +     +P+
Sbjct: 172 LGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPS 231

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
            +T+  L+       R+D A  +  + M       DG      +  LC  G    AL + 
Sbjct: 232 RLTYNALVRVFLEADRLDTAYLVHRE-MSDSGFNMDGYTLGCFVHLLCKAGRWREALALI 290

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY---------- 296
           E   +++ ++D  IY+ +IS L +A    E    L  M+   C PN VTY          
Sbjct: 291 E---KEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRK 347

Query: 297 -------------------------NALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
                                    N+LI  +C+  D+  A+ +L +MGD GC+   + Y
Sbjct: 348 RQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVY 407

Query: 332 NVILGGLCKDGK 343
           N+++GG+C + K
Sbjct: 408 NILIGGICGNEK 419



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 117/263 (44%), Gaps = 7/263 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y  +I +L + K  D   ++L ++  ++   P  II+  +I    +    + A ++
Sbjct: 705 NVYTYSSLIDRLFKDKRLDLALKVLSRMLENS-CAPNVIIYTEMIDGLCKVGKTDEAYRL 763

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
              M        V  +  +++     GK+D+  EL  Q+  K  +P+  +Y +LI+ C  
Sbjct: 764 MSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCA 823

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  L+DA ++ DEM +      +  +  +I G   E  +  +L L ++I     V P   
Sbjct: 824 AGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFII--SLGLLDEIAENVAV-PIIP 880

Query: 225 VFASLIKGLCAVGELSLALGVKEEM--VRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
            +  LI   C  G L LAL + + M         D  +YSSLI +L  A + ++   +  
Sbjct: 881 AYRILIDSFCKAGRLELALELHKXMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYA 940

Query: 283 EMKERGCKPNSVTYNALISGFCK 305
           +M +RG  P    +  L+ G  +
Sbjct: 941 DMIKRGGIPELSIFFYLVKGLIR 963


>gi|359496216|ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial [Vitis vinifera]
          Length = 383

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 155/311 (49%), Gaps = 5/311 (1%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           ++  L  FR     Y+  + +L  AK F  +++IL + K   + + +E     +I  YG+
Sbjct: 48  KSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQKK-YKDISREGFAVRLISLYGK 106

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PDAC 153
           + + + A ++FDEM     + +V  FN LL   +   K D+++  F  +   +S  PD  
Sbjct: 107 SGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVHSKKFDKVEGFFSELPSKLSVEPDLV 166

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           SYNI+I G      ++ A  + DEM K+ L+P L+TF TL+ G     R  +  K+    
Sbjct: 167 SYNIVIKGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGEKI-WGR 225

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSL-ALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           M   N+ PD + + + + GL +  +  L  +G+ EEM    I+ D   +++LI      G
Sbjct: 226 MEKKNILPDIRSYNAKLVGLVSSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCNDG 285

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           + +E      +M+E  C P+ +T+  L+  +C++  F+ AF +  E+ ++ C  + +   
Sbjct: 286 KVDEATNWYGKMRENDCSPDKLTFATLVPLYCEKGSFDQAFELCKEIFNRKCLVDEVLLQ 345

Query: 333 VILGGLCKDGK 343
             + GL K GK
Sbjct: 346 NAVDGLVKGGK 356



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 124/252 (49%), Gaps = 3/252 (1%)

Query: 95  RARLLERALQMFDEMSSFN-VQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC 153
           R R L+R +Q F + S  +  +     +   +    +  +   ++E+ +  +KY      
Sbjct: 35  RERNLKRLVQKFKKSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQKKYKDISRE 94

Query: 154 SYNI-LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            + + LI     S   + A+KVFDEM  ++ + ++++F  L+       + D+      +
Sbjct: 95  GFAVRLISLYGKSGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVHSKKFDKVEGFFSE 154

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           +    +V+PD   +  +IKGLC +G +  A+G+ +EM +  +E D   +++L++  + +G
Sbjct: 155 LPSKLSVEPDLVSYNIVIKGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSG 214

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGF-CKEEDFEAAFTILDEMGDKGCKANPISY 331
           R  +   I   M+++   P+  +YNA + G    E+       +++EM  KG K +  S+
Sbjct: 215 RFLDGEKIWGRMEKKNILPDIRSYNAKLVGLVSSEKRMLEGIGLVEEMQTKGIKPDGYSF 274

Query: 332 NVILGGLCKDGK 343
           N ++ G C DGK
Sbjct: 275 NALIKGFCNDGK 286


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 130/239 (54%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   SYN L++G + 
Sbjct: 124 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 183

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++ +++   M+   +QP + T+  LI GLC E ++D+A +L ++ M V  + P+G 
Sbjct: 184 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDE-MLVKGLVPNGV 242

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 302

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G KP+ +TY  LI G CKE D ++AF     M  +  + + ++Y  +  GLC++G+
Sbjct: 303 SVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGR 361



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 131/244 (53%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++  Y R   L+   ++   M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 169 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M V  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 289 KGDLKQAHHLIDE-MSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++L S L + GR  +   +L+EM   G KP++ TY  +I+ FCK+ D      +L EM
Sbjct: 348 AYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEM 407

Query: 320 GDKG 323
              G
Sbjct: 408 QRDG 411



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 130/244 (53%), Gaps = 6/244 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 155 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS--AMLASGVQPDVYTYSVL 212

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G     +++DA ++FDEM+ + L P  VTF TLI G C   RVD A+++ + ++   +
Sbjct: 213 INGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QS 271

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   + +LI GLC  G+L  A  + +EM    ++ D   Y++LI    K G  +   
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAF 331

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
              K M +   + + V Y AL SG C+E     A  +L EM   G K +  +Y +I+   
Sbjct: 332 EHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEF 391

Query: 339 CKDG 342
           CK G
Sbjct: 392 CKKG 395



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 105/198 (53%), Gaps = 2/198 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           ++ A ++FDEM    +      F TL++     G++D   E++ Q++ + +SPD  +YN 
Sbjct: 222 MDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 281

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G      L+ A  + DEM  + L+P  +T+ TLI G C E  +D A + ++ +++  
Sbjct: 282 LIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQE- 340

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N++ D   + +L  GLC  G    A  +  EM+   ++ DA  Y+ +I+   K G   + 
Sbjct: 341 NIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKG 400

Query: 278 PAILKEMKERGCKPNSVT 295
             +LKEM+  G  P+ VT
Sbjct: 401 SKLLKEMQRDGHVPSVVT 418



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G      ++   + + G +P+ V+YN L+
Sbjct: 119 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 221


>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           rugosa]
          Length = 414

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 135/258 (52%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  ++  Y R   L+   ++   M +  VQ  V  ++ L+N      K D   EL
Sbjct: 158 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANEL 217

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +++ K + P+   +  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 218 FDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 277

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M    +KPD   + +LI G C  G+L  A    + M+++   +D  
Sbjct: 278 KGDLKQAHHLIDE-MSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEV 336

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L   GR  +   +L+EM   G KP++ TY  +I+ FCK+ D      +L EM
Sbjct: 337 XYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEM 396

Query: 320 GDKGCKANPISYNVILGG 337
              G   + ++YNV++ G
Sbjct: 397 QRDGHVPSVVTYNVLMNG 414



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 126/239 (52%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   SYN L++G + 
Sbjct: 113 YEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIR 172

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++ +++   M+   +QP + T+  LI G C E + D+A +L ++ M V  + P+  
Sbjct: 173 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDE-MLVKGLVPNXV 231

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM
Sbjct: 232 XFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 291

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G KP+ +TY  LI G CKE D ++AF     M  +  + + + Y  ++ GLC +G+
Sbjct: 292 SXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGR 350



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 128/244 (52%), Gaps = 6/244 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNIL 158
           A  +FD ++ + ++ +V  +NTL+N  +  G LD   R+K    ++   V PD  +Y++L
Sbjct: 144 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS--AMLASGVQPDVYTYSVL 201

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G     + +DA ++FDEM+ + L P  V F TLI G C   RVD A+++ + ++   +
Sbjct: 202 INGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLS-QS 260

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   + +LI GLC  G+L  A  + +EM    ++ D   Y++LI    K G  +   
Sbjct: 261 LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAF 320

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
              K M +   + + V Y ALISG C E     A  +L EM   G K +  +Y +I+   
Sbjct: 321 EHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEF 380

Query: 339 CKDG 342
           CK G
Sbjct: 381 CKKG 384



 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 49/103 (47%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G      ++   + + G +P+ V+YN L+
Sbjct: 108 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLM 167

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ G CK+ K
Sbjct: 168 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESK 210


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 127/243 (52%), Gaps = 1/243 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           AL  F +++   +   V  FNTLL+      ++     LF Q+ E    P+  ++  L++
Sbjct: 133 ALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMN 192

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     R+ +A  + D M++  LQPT +T+GT++ G+C +     AL L   +  V ++ 
Sbjct: 193 GLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHII 252

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+  +++++I  LC  G  S A  +  EM    I  D   Y+S+I     +GR ++   +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L+EM ER   P+ VTYNALI+ F KE  F  A  + DEM  +G   N I+Y+ ++ G CK
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 341 DGK 343
             +
Sbjct: 373 QNR 375



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 156/310 (50%), Gaps = 14/310 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L  Y+ +I     +  + + +Q+L ++  + +I P  + +  +I  + +      A ++
Sbjct: 289 DLFTYNSMIVGFCSSGRWSDAEQLLQEML-ERKISPDVVTYNALINAFVKEGKFFEAEEL 347

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           +DEM    +      ++++++      +LD  + +F +M  K  SP+  ++N LI G   
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCG 407

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           ++R++D  ++  EM +  L     T+ TLI+G  L   ++ AL L ++++    + PD  
Sbjct: 408 AKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMIS-SGLCPDIV 466

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG-----------IYSSLISALFKAGR 273
              +L+ GLC  G+L  AL + + M + K ++DA             Y+ LIS L   G+
Sbjct: 467 TCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGK 526

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   + +EM  RG  P+++TY+++I G CK+   + A  + D MG K    N +++  
Sbjct: 527 FLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTT 586

Query: 334 ILGGLCKDGK 343
           ++ G CK G+
Sbjct: 587 LINGYCKAGR 596



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 149/309 (48%), Gaps = 12/309 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I    +   F E +++  ++     I+P  I + ++I  + +   L+ A  M
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEML-PRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVV 164
           F  M++      +  FNTL++      ++D  M+ L ++ E  +  D  +YN LIHG  +
Sbjct: 383 FYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYL 442

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-------KEDIMRVY 217
              L  A  +  EM+   L P +VT  TL+ GLC   ++ +AL++       K+D+   +
Sbjct: 443 VGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASH 502

Query: 218 ---NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
               V+PD Q +  LI GL   G+   A  + EEM    I  D   YSS+I  L K  R 
Sbjct: 503 PFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRL 562

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +E   +   M  +   PN VT+  LI+G+CK    +    +  EMG +G  AN I+Y  +
Sbjct: 563 DEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITL 622

Query: 335 LGGLCKDGK 343
           + G  K G 
Sbjct: 623 ICGFRKVGN 631



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 144/287 (50%), Gaps = 16/287 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           NL+ ++ +I     AK  D+  ++LH++  +T +V     +  +I GFY    L   AL 
Sbjct: 394 NLITFNTLIDGYCGAKRIDDGMELLHEMT-ETGLVADTTTYNTLIHGFYLVGDL-NAALD 451

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY------------VSPDA 152
           +  EM S  +   +   +TLL+     GKL    E+F++M+K             V PD 
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YNILI G +   +  +A ++++EM  R + P  +T+ ++I GLC + R+DEA ++  D
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF-D 570

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M   +  P+   F +LI G C  G +   L +  EM R  I  +A  Y +LI    K G
Sbjct: 571 SMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVG 630

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             N    I +EM   G  P+++T   +++G   +E+ + A  +L+++
Sbjct: 631 NINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 135/290 (46%), Gaps = 39/290 (13%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVS 149
           GF+   + LE A+ +F +M       +V  F  L+   +   + D +  L+Q ME K + 
Sbjct: 53  GFH-EIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIR 111

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
            D  S+ ILI       +L  A   F ++ K  L P +VTF TL++GLC+E RV EAL L
Sbjct: 112 CDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNL 171

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE-------------- 255
              +      +P+   F +L+ GLC  G +  A+ + + M+ D ++              
Sbjct: 172 FHQMFET-TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMC 230

Query: 256 ----------------------MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
                                  +  IYS++I +L K GR ++   +  EM+E+G  P+ 
Sbjct: 231 KKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDL 290

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            TYN++I GFC    +  A  +L EM ++    + ++YN ++    K+GK
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGK 340


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 159/321 (49%), Gaps = 22/321 (6%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEII-FCNVIGFYGRARLL 99
           + FR N + Y ++I  L +        Q+L ++  D ++V   ++ +  +I    + +L+
Sbjct: 147 RGFRLNEVSYGILINGLCKMGETRAALQVLRKI--DGKLVNTNVVMYSTIIDSLCKEKLV 204

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNIL 158
             A +++ +M    V   V  F+ L+      G+      LF  M    ++PD C++NIL
Sbjct: 205 TEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNIL 264

Query: 159 IHG--------------CVVSR---RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
           +                 V+ +   ++  A  VF+ + KRR+ P + ++  +I  LC   
Sbjct: 265 VDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIK 324

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
            VDEAL L  + MR   + PD   ++SLI GLC    +S A  + ++M       D   Y
Sbjct: 325 MVDEALSLFNE-MRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQPADVITY 383

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           +S + AL K  + ++  A++K++K++G +PN  TYN LI G CKE  FE A  I  ++  
Sbjct: 384 TSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDLLI 443

Query: 322 KGCKANPISYNVILGGLCKDG 342
           KG K    +YN+++ GLC +G
Sbjct: 444 KGYKVTVWTYNIMINGLCLEG 464



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 149/314 (47%), Gaps = 20/314 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  II  L + K+  E  ++  Q+    ++ P  + F  +I  +      + A  +
Sbjct: 187 NVVMYSTIIDSLCKEKLVTEAYELYSQMI-VKKVSPDVVTFSALIYGFCMVGQFKEAFGL 245

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCG-----------------KLDRMKELFQIM-EKY 147
           F EM   N+   V  FN L++     G                 ++++ K +F I+ ++ 
Sbjct: 246 FHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRR 305

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           V+PD  SY I+I      + +++A  +F+EM  + + P  VT+ +LI GLC   R+  A 
Sbjct: 306 VTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAW 365

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           +L  D M       D   + S +  LC   ++  A+ + +++    I+ +   Y+ LI  
Sbjct: 366 ELL-DQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDG 424

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L K GR      I +++  +G K    TYN +I+G C E  F+ A T+L++M D GC  +
Sbjct: 425 LCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPD 484

Query: 328 PISYNVILGGLCKD 341
            ++Y  I+  L K+
Sbjct: 485 VVTYETIIRALFKN 498



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 129/259 (49%), Gaps = 17/259 (6%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           ALQ+  ++    V   V  ++T+++       +    EL+ Q++ K VSPD  +++ LI+
Sbjct: 172 ALQVLRKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIY 231

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE-----ALKLKE---- 211
           G  +  + ++A+ +F EMV   + P + TF  L+  LC E    E     A+ +KE    
Sbjct: 232 GFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQV 291

Query: 212 -------DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
                  +I+    V PD   +  +IK LC +  +  AL +  EM    I  D   YSSL
Sbjct: 292 NKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSL 351

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           I  L K+ R +    +L +M  RG   + +TY + +   CK    + A  ++ ++ D+G 
Sbjct: 352 IDGLCKSERISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGI 411

Query: 325 KANPISYNVILGGLCKDGK 343
           + N  +YN+++ GLCK+G+
Sbjct: 412 QPNINTYNILIDGLCKEGR 430



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 100/191 (52%), Gaps = 2/191 (1%)

Query: 134 LDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           +D    LF  M  K ++PD  +Y+ LI G   S R+  AW++ D+M  R     ++T+ +
Sbjct: 326 VDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQPADVITYTS 385

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
            ++ LC   +VD+A+ L + I +   ++P+   +  LI GLC  G    A  + ++++  
Sbjct: 386 FLHALCKNHQVDKAVALVKKI-KDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDLLIK 444

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
             ++    Y+ +I+ L   G  +E   +L++M++ GC P+ VTY  +I    K ++   A
Sbjct: 445 GYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPDVVTYETIIRALFKNDENHKA 504

Query: 313 FTILDEMGDKG 323
             +L EM  +G
Sbjct: 505 EKLLREMIARG 515



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 108/239 (45%), Gaps = 4/239 (1%)

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSR 166
            +MS F++  T+ + ++  N        D +   ++++    SP    +N ++   V S 
Sbjct: 2   SQMSQFSLFRTLHYSHSKFNSN-HVDVHDAISSFYRMLRMNPSPSIIEFNKILGSLVKSN 60

Query: 167 R--LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
                 A  ++  +    + P++VTF T+I   C    +D A  +   I+++    PD  
Sbjct: 61  NNNYPIAISLYHRLQLNAITPSIVTFNTVINCYCHLGEMDFAFSVLAKILKM-GYHPDTI 119

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
              +LIKGLC  G++  AL   + ++     ++   Y  LI+ L K G       +L+++
Sbjct: 120 TLTTLIKGLCLNGKVHEALHFHDHVIARGFRLNEVSYGILINGLCKMGETRAALQVLRKI 179

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +    N V Y+ +I   CKE+    A+ +  +M  K    + ++++ ++ G C  G+
Sbjct: 180 DGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQ 238


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 129/255 (50%), Gaps = 2/255 (0%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKY 147
           +I  + +A  ++ A Q+FD M S      V  +N ++    + GKL+   E+  ++++  
Sbjct: 137 MISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDG 196

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
             P   +Y ILI   ++  R+ +A ++FDE+V R L+P L T+  +I G+C E   D AL
Sbjct: 197 CKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRAL 256

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
                 +      PD   +  L++             + ++MV    E +   +S LIS+
Sbjct: 257 DFVRH-LSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISS 315

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
             + GR  E   +L+ MKE+G  P+S +Y+ LIS FCKE   + A   L++M   GC  +
Sbjct: 316 FCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPD 375

Query: 328 PISYNVILGGLCKDG 342
            ++YN IL  LCK G
Sbjct: 376 IVNYNTILATLCKFG 390



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 167/323 (51%), Gaps = 20/323 (6%)

Query: 25  FKNPN-PNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE 83
           F+ P+ PN ++ +AH +K           ++ +  RA   +E    L  +   ++    +
Sbjct: 50  FRQPHFPNLDNRDAHLMK-----------LLNRSCRAGKHNESLYFLESVV--SKGFKPD 96

Query: 84  IIFCN--VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
           ++ C   + GF+  +R L++A+++ + + ++     V  +N +++      ++D   ++F
Sbjct: 97  VVLCTKLIKGFFN-SRNLKKAMRVMEILETYG-DPDVYSYNAMISGFSKANQIDSANQVF 154

Query: 142 QIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
             M  +  SPD  +YNI+I       +LE A++V DE++K   +P+++T+  LI    LE
Sbjct: 155 DRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILE 214

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            R++EAL+L ++++    ++PD   + ++I+G+C  G    AL     +       D   
Sbjct: 215 GRINEALELFDELVS-RGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVS 273

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
           Y+ L+ +     R  +   ++K+M   GC+PN VT++ LIS FC+E     A  +L+ M 
Sbjct: 274 YNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMK 333

Query: 321 DKGCKANPISYNVILGGLCKDGK 343
           +KG   +  SY+ ++   CK+G+
Sbjct: 334 EKGLTPDSYSYDPLISAFCKEGR 356



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 149/307 (48%), Gaps = 11/307 (3%)

Query: 41  KPFRYNLLHYDLIITKL-GRAKM---FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           + F  +++ Y+++I  L  R K+   F+ M ++L      + I    +I   ++   GR 
Sbjct: 160 RGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILE--GR- 216

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSY 155
             +  AL++FDE+ S  ++  +  +N ++      G  DR  +  + +  +  +PD  SY
Sbjct: 217 --INEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSY 274

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           NIL+   +   R ED  ++  +MV    +P +VT   LI   C E RV EA+ + E +M+
Sbjct: 275 NILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLE-VMK 333

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
              + PD   +  LI   C  G L LA+   E+MV D    D   Y+++++ L K G  +
Sbjct: 334 EKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCAD 393

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
               + +++ E GC P    YN + S      +   A  ++ EM  KG   + I+YN ++
Sbjct: 394 LALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLI 453

Query: 336 GGLCKDG 342
             LC+DG
Sbjct: 454 SCLCRDG 460



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 141/305 (46%), Gaps = 7/305 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARL 98
           +  R +L  Y+ II  + +  M D     +  L    R    +++  N++   F  ++R 
Sbjct: 230 RGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLS--ARGCNPDVVSYNILLRSFLNKSRW 287

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
            E   ++  +M     +  V   + L++     G++     + ++M EK ++PD+ SY+ 
Sbjct: 288 -EDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDP 346

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI       RL+ A +  ++MV     P +V + T++  LC     D AL + E +  V 
Sbjct: 347 LISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEV- 405

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
              P  + + ++   L + G    AL +  EM+R  I+ D   Y+SLIS L + G  +E 
Sbjct: 406 GCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEA 465

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +L +M+    +P  +++N ++ G CK         +L  M +KGC  N  SY +++ G
Sbjct: 466 IGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIEG 525

Query: 338 LCKDG 342
           +   G
Sbjct: 526 IAYAG 530


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 161/334 (48%), Gaps = 38/334 (11%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  R N++ Y  II  + + K+ ++   +  ++    RI P  + + ++I  +     L+
Sbjct: 192 KLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMV-SKRISPDVVTYSSLISGFCVVGKLK 250

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            A+ +F+ M S N+   V  F+ L++     GK+   K +  +M +K V  D  +YN L+
Sbjct: 251 YAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLM 310

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G  + +++  A  +F+ M +R + P + ++  +I G C    VDEA+KL E+ M    +
Sbjct: 311 DGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEE-MHCKQI 369

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEM------------------------------ 249
            P+   + SL+ GLC  G  S AL + +EM                              
Sbjct: 370 FPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIV 429

Query: 250 ----VRDK-IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
               +++K I+ D   Y+ LI+ L K GR ++   + +++  +G  PN  TY +LI+GFC
Sbjct: 430 LLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFC 489

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +  F+    +L +M D GC  N I+Y +++  L
Sbjct: 490 NKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSL 523



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 162/303 (53%), Gaps = 5/303 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV-PKEIIFCNVIGFYGRARLLER 101
           F+ + + Y  +I  L R        Q+L ++  D ++V P  +++  +I    + +L+  
Sbjct: 159 FQLDQVSYGTLINGLCRVGETKAAVQLLRRV--DGKLVRPNVVMYSTIIDSMCKDKLVND 216

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           A  ++ EM S  +   V  +++L++     GKL    +LF +++   ++P+  +++ILI 
Sbjct: 217 AFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILID 276

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     ++ +A  V   M+K+ ++  +VT+ +L+ G CL  +V++A  L  ++M    V 
Sbjct: 277 GFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSL-FNVMAQRGVT 335

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   ++ +I G C +  +  A+ + EEM   +I  +   Y+SL+  L K+GR +    +
Sbjct: 336 PDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALEL 395

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + EM +RG   N +TYN+++   CK    + A  +L ++ +KG + +  +Y V++ GLCK
Sbjct: 396 VDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCK 455

Query: 341 DGK 343
            G+
Sbjct: 456 VGR 458



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 139/307 (45%), Gaps = 35/307 (11%)

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           + ++L H    +P  I F  ++G   +A+  + AL +  +M    ++      N L+N  
Sbjct: 44  LFNRLLHKNNPIPPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCF 103

Query: 129 LTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
              G +     +F +I++K   PDA ++ ILI G  +   +  A    D++V +  Q   
Sbjct: 104 SQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQ 163

Query: 188 VTFGTLIYGLC----------LELRVDEAL------------------KLKEDIMRVY-- 217
           V++GTLI GLC          L  RVD  L                  KL  D   +Y  
Sbjct: 164 VSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCE 223

Query: 218 ----NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
                + PD   ++SLI G C VG+L  A+ +   M+ D I  +   +S LI    K G+
Sbjct: 224 MVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGK 283

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   +L  M ++  K + VTYN+L+ G+C  +    A ++ + M  +G   +  SY++
Sbjct: 284 VREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSI 343

Query: 334 ILGGLCK 340
           ++ G CK
Sbjct: 344 MINGFCK 350



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 139/281 (49%), Gaps = 35/281 (12%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
            I P    F  +I  + +   +  A  +   M   NV++ V  +N+L++      ++++ 
Sbjct: 263 NINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKA 322

Query: 138 KELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           K LF +M ++ V+PD  SY+I+I+G    + +++A K+F+EM  +++ P +VT+ +L+ G
Sbjct: 323 KSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDG 382

Query: 197 LCLELRVDEALKLKEDI--------MRVYN--------------------------VKPD 222
           LC   R   AL+L +++        +  YN                          ++PD
Sbjct: 383 LCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPD 442

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              +  LI GLC VG L  A  V E+++      +   Y+SLI+     G  +E  A+L 
Sbjct: 443 IFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLS 502

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +MK+ GC PN++TY  LI    ++++ + A  +L EM  +G
Sbjct: 503 KMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREMIARG 543



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 1/194 (0%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P A  +  ++   + +++ + A  +  +M    ++P  +T   L+        +  +  +
Sbjct: 56  PPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSV 115

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
              I++     PD   F  LIKGLC  GE+  AL   +++V    ++D   Y +LI+ L 
Sbjct: 116 FAKILK-KGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLC 174

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           + G       +L+ +  +  +PN V Y+ +I   CK++    AF +  EM  K    + +
Sbjct: 175 RVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVV 234

Query: 330 SYNVILGGLCKDGK 343
           +Y+ ++ G C  GK
Sbjct: 235 TYSSLISGFCVVGK 248


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 170/375 (45%), Gaps = 54/375 (14%)

Query: 13  RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ 72
           R    P LA+Q F        D   H +  + + L   D+++    + +     + +LH 
Sbjct: 2   RRSSRPDLAIQFFDWAGEQ--DGYKHDVHSYNHLL---DILVKSGHQFRTGKVYKDLLH- 55

Query: 73  LKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132
               +   P  + F  +I    +A    RAL+    +  F+V   V  FN L++     G
Sbjct: 56  ----SGCSPNLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDG 111

Query: 133 KLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR--RLQPTLVT 189
             D+  +LF+ ME   V+PD  +YN +I G   S  LE A ++ +EM++R  +  P +VT
Sbjct: 112 NPDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVT 171

Query: 190 FGTLI-YGLCLELRVDEALKLKE-------------------------------DIMRVY 217
           + TLI  G+C +  V+EAL++ +                               +I++  
Sbjct: 172 YNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM 231

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           +  PD   F +L+ G C  G L  AL V EEM R+ I  D   Y+ L++ L + G+    
Sbjct: 232 SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVA 291

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS------- 330
             +L+E+  +G  P+ + Y +L+ G CK  + E A  ++ EM  +   A  +S       
Sbjct: 292 FYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPL 351

Query: 331 --YNVILGGLCKDGK 343
             YN++LGGL KDG 
Sbjct: 352 FTYNIVLGGLIKDGS 366



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 162/368 (44%), Gaps = 51/368 (13%)

Query: 24  LFKNPNPNPNDTEAHPLKPFRYN--LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVP 81
           LFK+ NP+        ++  R N  +  Y+ +I+ L ++   ++ +++L ++        
Sbjct: 107 LFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSA 166

Query: 82  KEIIFCNVIGFYG--RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
            +I+  N +   G  +   +E AL++ D M        V  +N++++     G++    E
Sbjct: 167 PDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAE 226

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           + + M    SPD  ++N L+ G   +  L  A +V +EM +  + P ++T+  L+ GLC 
Sbjct: 227 ILKTMS--CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCR 284

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI--EM- 256
             +V  A  L E+I+R   + PD   + SL+ GLC  GE+  A  + +EM   +I  EM 
Sbjct: 285 VGQVQVAFYLLEEIVRQGYI-PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMV 343

Query: 257 -----------------------------------------DAGIYSSLISALFKAGRKN 275
                                                    D   Y++LI  L KA R  
Sbjct: 344 SINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVR 403

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E   +  EM   GC PN VT  +++ G C+    + A++++ EM  K    N + Y  ++
Sbjct: 404 EACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLI 463

Query: 336 GGLCKDGK 343
            GLCK  +
Sbjct: 464 DGLCKSDR 471



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 141/308 (45%), Gaps = 15/308 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ II  L  A    E  +IL  +       P  + F  ++  + +A +L RAL++
Sbjct: 204 DVITYNSIIHALCVAGRVVEAAEILKTMS----CSPDLVTFNTLLDGFCKAGMLPRALEV 259

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
            +EM   N+   V  +  L+N     G++     L + I+ +   PD  +Y  L+ G   
Sbjct: 260 LEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCK 319

Query: 165 SRRLEDAWK---------VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           S  +E+A K         +  EMV   + P L T+  ++ GL  +  + +A+ L  D++ 
Sbjct: 320 SGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVA 379

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
              V PD   + +LI GLC    +  A  + +EM       +     S++  L + GR +
Sbjct: 380 RGYV-PDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVD 438

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +  +++ EM  +   PN V Y +LI G CK +  + A  +LD M  +G   +  +Y  ++
Sbjct: 439 DAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLI 498

Query: 336 GGLCKDGK 343
             +   G+
Sbjct: 499 VSMIHGGR 506



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 130/286 (45%), Gaps = 20/286 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR--IVPKEIIFCNVIGFYGRARLLERAL 103
           +++ Y +++  L R     ++Q   + L+   R   +P  I + +++    ++  +E A 
Sbjct: 271 DVITYTILVNGLCRVG---QVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAH 327

Query: 104 QMFDEMS---------SFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDA 152
           ++  EMS         S N+   +  +N +L   +  G + +   L    +   YV PD 
Sbjct: 328 KLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYV-PDV 386

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN LI G   + R+ +A  + DEM      P  VT G++++GLC   RVD+A  L  +
Sbjct: 387 VTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVE 446

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           + R  +  P+  V+ SLI GLC    +  A  V + M    + +D   Y  LI ++   G
Sbjct: 447 MSRKRHA-PNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGG 505

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
           R  E  A+  EM  RG  P+  T   L         FE  +T L+E
Sbjct: 506 RVAEAMAMYDEMVARGFLPDGSTSKTLEEAAMSNSVFE--WTNLEE 549



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 131/288 (45%), Gaps = 12/288 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ ++ ++    +A M     ++L ++  +  I+P  I +  ++    R   ++ A  +
Sbjct: 236 DLVTFNTLLDGFCKAGMLPRALEVLEEMCREN-ILPDVITYTILVNGLCRVGQVQVAFYL 294

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF------QIMEKYVS----PDACSY 155
            +E+        V  + +L++     G+++   +L       +I+ + VS    P   +Y
Sbjct: 295 LEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTY 354

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           NI++ G +    +  A  +  ++V R   P +VT+ TLI GLC   RV EA  L ++ M 
Sbjct: 355 NIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADE-MA 413

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
                P+     S++ GLC VG +  A  +  EM R +   +  +Y+SLI  L K+ R +
Sbjct: 414 SLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMD 473

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +   +L  M+ +G   +   Y  LI           A  + DEM  +G
Sbjct: 474 DACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARG 521


>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 418

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 129/228 (56%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++  +  G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E ++D+A +L ++++    + P+G  F +LI G C 
Sbjct: 195 NAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD-NGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 254 NGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF    +M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGR 361



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 132/244 (54%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y +   L+   ++ + M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++  + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   +++M+++ I +D  
Sbjct: 289 KGDLKQAQDLIDE-MSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP   TY  +I+ FCK+ D      +L EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407

Query: 320 GDKG 323
              G
Sbjct: 408 QRDG 411



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/267 (32%), Positives = 137/267 (51%), Gaps = 9/267 (3%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ ++++ +V  FNTL+N  +  G LD 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M+   V PD  +Y++LI+G     +++DA ++FDEM+   L P  VTF TLI 
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   RVD A+++ + ++   ++ PD   + +LI GLC  G+L  A  + +EM    ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI    K G         K+M +   + + V Y ALISG C+E     A  +
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
           L EM   G K    +Y +I+   CK G
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 2/198 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           ++ A ++FDEM    +      F TL++     G++D   E++ Q++ + +SPD  +YN 
Sbjct: 222 MDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 281

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G      L+ A  + DEM  + L+P  +T+ TLI G C E  ++ A + ++ +++  
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKE- 340

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N++ D   + +LI GLC  G    A  +  EM+   ++ + G Y+ +I+   K G     
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400

Query: 278 PAILKEMKERGCKPNSVT 295
             +LKEM+  G  P+ VT
Sbjct: 401 SKLLKEMQRDGYMPSVVT 418



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE +          ++ L+ +  K G      ++   + +   +P+ V++N L+
Sbjct: 119 LVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ K  D +  F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221


>gi|356560497|ref|XP_003548528.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Glycine max]
          Length = 490

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 169/336 (50%), Gaps = 16/336 (4%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L R + D K AL +F+  +  P+         FR++   YD+++  LGR K+ ++++ +L
Sbjct: 82  LWRYKDDWKSALGVFRWASSRPS---------FRHSSESYDMMVDILGRMKVMEKLRDLL 132

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130
            +++ +  +V    +   +  F G  + ++ A+++FD++ +  ++   +  N LL+    
Sbjct: 133 EEMR-EGGLVNMNTVAKAMRRFVGAGQWVD-AVRIFDDLQALGLEKNTESMNLLLDTLCK 190

Query: 131 CGKLDRMKELFQIMEKYVSPDACSYNILIHG-CVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
              + + +E+F  ++++++P+A ++NI IHG C + R  E  W +  EM      P +++
Sbjct: 191 EKFVQQAREIFLELKQHIAPNAHTFNIFIHGWCKICRVDEAHWTI-QEMKGYGFHPCVIS 249

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           + TLI   C E       +L  D M+      +   + S++  L    +   AL V E M
Sbjct: 250 YSTLIQCYCQEGNFSRVYELL-DEMQAQGCSANVITYTSIMCALGKAKKFEEALKVPERM 308

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILK-EMKERGCKPNSVTYNALISGFCKEED 308
                  D   ++SLI  L +AGR ++   + K EM + G  PN+ TYN++IS FC    
Sbjct: 309 RSSGCRPDTLFFNSLIHTLGRAGRLDDAADVFKVEMPKAGVSPNTSTYNSMISMFCYHAQ 368

Query: 309 FEAAFTILDEMGDK-GCKANPISYNVILGGLCKDGK 343
            + A  IL EM +  GCK +  +Y+ ++    + GK
Sbjct: 369 EKRALEILKEMENSGGCKPDAQTYHPLIKSCFRSGK 404



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 111/249 (44%), Gaps = 16/249 (6%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  I +  +I  Y +     R  ++ DEM +      V  + +++      GK  + +E 
Sbjct: 245 PCVISYSTLIQCYCQEGNFSRVYELLDEMQAQGCSANVITYTSIM---CALGKAKKFEEA 301

Query: 141 FQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFD-EMVKRRLQPTLVTFGTLIY 195
            ++ E+  S    PD   +N LIH    + RL+DA  VF  EM K  + P   T+ ++I 
Sbjct: 302 LKVPERMRSSGCRPDTLFFNSLIHTLGRAGRLDDAADVFKVEMPKAGVSPNTSTYNSMIS 361

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI- 254
             C   +   AL++ +++      KPD Q +  LIK     G++    GV  E++ D I 
Sbjct: 362 MFCYHAQEKRALEILKEMENSGGCKPDAQTYHPLIKSCFRSGKID---GVLSEILNDMIN 418

Query: 255 ----EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
                +D   Y+ LI  L +  R N   ++ +EM ++   P   T   L+    ++  ++
Sbjct: 419 KQHLSLDLSTYTLLIHGLCREDRCNWAFSLFEEMIDQDIIPRYRTCRLLLDEVKQKNMYQ 478

Query: 311 AAFTILDEM 319
           AA  I D M
Sbjct: 479 AAEKIEDLM 487


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 169/343 (49%), Gaps = 45/343 (13%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + +    + ++  L + K +++ +++LH        VP E+ +  V+  Y +    E
Sbjct: 448 KGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRG-FVPDEVSYGTVMAAYFKEYNPE 506

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE----LFQIMEKYVSPDACSYN 156
            AL+++D+M    +  ++  +NTL+  K  C +++R+KE    L +++EK + PD  +YN
Sbjct: 507 PALRLWDQMIERKLIPSISTYNTLI--KGLC-RMERLKEAIDKLNELVEKGLVPDETTYN 563

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           I+IH       LE+A++  ++MV+   +P +VT  TL+ GLCL  ++D+ALKL E  +  
Sbjct: 564 IIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVE- 622

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
              K D   + +LI+ +C VG++  AL   ++M    ++ DA  Y+ ++SAL +AGR  E
Sbjct: 623 KGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEE 682

Query: 277 FPAILKEMKERG----------CKPNSV--------------------------TYNALI 300
              +L ++ + G           KP+S                           TY   +
Sbjct: 683 AHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERL 742

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G C     + A  +LDEM  KG   +  +Y  ++ GL K  K
Sbjct: 743 NGLCTGGQLKEAKAVLDEMMQKGMPVDSSTYITLMEGLIKRQK 785



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 125/264 (47%), Gaps = 1/264 (0%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           R+ P    F  ++  +     L  AL     M  F +      +NTLLN     G L   
Sbjct: 203 RLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEA 262

Query: 138 KELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           + L   M++  ++P   +YN L+        ++ A KV + M     +P L T+  L  G
Sbjct: 263 RALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVG 322

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC   +VDEA +LK+++ R+    PD   + +L+         S AL + EEM    ++ 
Sbjct: 323 LCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKP 382

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
               ++ ++ +L K G+  E    L+++ E G  P+ +TYN LI  +CK  +   AFT++
Sbjct: 383 TLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLM 442

Query: 317 DEMGDKGCKANPISYNVILGGLCK 340
           DEM  KG K +  + N +L  LCK
Sbjct: 443 DEMVGKGLKMDTFTLNTVLYNLCK 466



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 149/305 (48%), Gaps = 5/305 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  +  L+ +++++  L +    +E    L ++  +  + P  I +  +I  Y +A  + 
Sbjct: 378 KGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEG-LAPDVITYNTLIDAYCKAGNVA 436

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
           +A  + DEM    ++M     NT+L       + +  +EL     ++   PD  SY  ++
Sbjct: 437 KAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVM 496

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL-KLKEDIMRVYN 218
                    E A +++D+M++R+L P++ T+ TLI GLC   R+ EA+ KL E + +   
Sbjct: 497 AAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEK--G 554

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   +  +I   C  G+L  A     +MV +  + D    ++L++ L   G+ ++  
Sbjct: 555 LVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKAL 614

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            + +   E+G K + +TYN LI   CK  D + A    D+M  KG + +  +YNV+L  L
Sbjct: 615 KLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSAL 674

Query: 339 CKDGK 343
            + G+
Sbjct: 675 SEAGR 679



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 148/302 (49%), Gaps = 2/302 (0%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  +L  Y+++   L +A   DE  ++  +++  +  +P  + +  ++    + R    A
Sbjct: 309 FEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDA 368

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHG 161
           L++ +EM    V+ T+   N ++      GKL+  + +L +I E+ ++PD  +YN LI  
Sbjct: 369 LRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDA 428

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              +  +  A+ + DEMV + L+    T  T++Y LC   R ++A +L     +   V P
Sbjct: 429 YCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFV-P 487

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +++           AL + ++M+  K+      Y++LI  L +  R  E    L
Sbjct: 488 DEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKL 547

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            E+ E+G  P+  TYN +I  +CKE D E AF   ++M +   K + ++ N ++ GLC  
Sbjct: 548 NELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLH 607

Query: 342 GK 343
           GK
Sbjct: 608 GK 609



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 130/304 (42%), Gaps = 45/304 (14%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSF-NVQMTVKFFNTLLNP------KLTCGK 133
           P   +    +  Y R RL   A Q+   +     V+ +++  N +L+        L    
Sbjct: 133 PTSPLADAALSAYARLRLPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQAS 192

Query: 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           LD  + L ++    + P+  ++N+L+H       L DA      M    L P  VT+ TL
Sbjct: 193 LDVFRSLIELR---LHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTL 249

Query: 194 IYGLCLELRVDEA----LKLKED------------------------------IMRVYNV 219
           +   C +  + EA     ++K D                               M  Y  
Sbjct: 250 LNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGF 309

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM-DAGIYSSLISALFKAGRKNEFP 278
           +PD + +  L  GLC  G++  A  +K+EM R    + D   Y++L+ A FK    ++  
Sbjct: 310 EPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDAL 369

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +L+EM+++G KP  VT+N ++   CKE   E A   L+++ ++G   + I+YN ++   
Sbjct: 370 RLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAY 429

Query: 339 CKDG 342
           CK G
Sbjct: 430 CKAG 433



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 112/266 (42%), Gaps = 37/266 (13%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I  L R +   E    L++L  +  +VP E  +  +I  Y +   LE A +  ++M
Sbjct: 527 YNTLIKGLCRMERLKEAIDKLNELV-EKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKM 585

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRL 168
              + +  V   NTL+N     GKLD+  +LF+  +EK    D  +YN LI        +
Sbjct: 586 VENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDV 645

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL------------------- 209
           + A   FD+M  + LQP   T+  ++  L    R +EA  +                   
Sbjct: 646 DTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLL 705

Query: 210 -----KEDIMRVYNVKPDGQ-----------VFASLIKGLCAVGELSLALGVKEEMVRDK 253
                 E  ++ +  KP+ +            +   + GLC  G+L  A  V +EM++  
Sbjct: 706 KPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQKG 765

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPA 279
           + +D+  Y +L+  L K  ++    A
Sbjct: 766 MPVDSSTYITLMEGLIKRQKRQTHAA 791



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 62/125 (49%)

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + P+   F  L+   C+ G L+ AL     M    +  DA  Y++L++A  + G   E  
Sbjct: 204 LHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEAR 263

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           A+L  MK  G  P   TYN L+S F +    + A  +++ M   G + +  +YNV+  GL
Sbjct: 264 ALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGL 323

Query: 339 CKDGK 343
           C+ GK
Sbjct: 324 CQAGK 328


>gi|302776342|ref|XP_002971343.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
 gi|300161325|gb|EFJ27941.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
          Length = 584

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 148/293 (50%), Gaps = 5/293 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDE- 108
           Y ++I    +    D   ++L +++ + RI P  +I+ +++    R+     A +  DE 
Sbjct: 169 YGVLIDGYCKELRMDRALELLREMRVERRIQPDVVIYNSIVDGLCRSNRFLEAWKFLDET 228

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRR 167
           M       TV  + +L+       K+     ++  M E+ + P   SY+++I G   + R
Sbjct: 229 MVLQGCSPTVVTYTSLIRGACKAKKMKLAVRIWNAMLERKIQPTIVSYSVIIDGLSKAGR 288

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           + DA++V  EM     +  +V + TLI GLC    +D+A  L   IM+     P+ + +A
Sbjct: 289 VYDAYRVVREMETLGCELNVVIYTTLIDGLCKSGFLDDAYALYR-IMKRSGAFPNQRTYA 347

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +LI   C       ALG+ +  +RD   +D  +Y++++S L +  R ++  A+ +EM+  
Sbjct: 348 TLIDTFCRNDRTETALGLFDH-IRDYCPLDVAMYTAVVSGLCRERRLDDARALFREMRLA 406

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK-GCKANPISYNVILGGLC 339
           G   ++  YN L+ G  + E  E AF IL+E+GD  GC AN ++YN ++ G C
Sbjct: 407 GVSADTHAYNVLLHGAFRSERPEEAFRILEELGDDPGCVANLLTYNTVIAGCC 459



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 146/293 (49%), Gaps = 7/293 (2%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           +I  L ++    +  + L +L  D  I P  + F  +I  + + R++ERA ++F EM   
Sbjct: 101 LIDALSKSTRLADAARAL-ELMRDAGIHPDVVTFTVMIRGFCKNRMMERAWEIFQEMIKS 159

Query: 113 N-VQMTVKFFNTLLNPKLTCGKLDRMKELFQIM--EKYVSPDACSYNILIHGCVVSRRLE 169
           N  Q     +  L++      ++DR  EL + M  E+ + PD   YN ++ G   S R  
Sbjct: 160 NRCQPDCFLYGVLIDGYCKELRMDRALELLREMRVERRIQPDVVIYNSIVDGLCRSNRFL 219

Query: 170 DAWKVFDE-MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           +AWK  DE MV +   PT+VT+ +LI G C   ++  A+++   ++    ++P    ++ 
Sbjct: 220 EAWKFLDETMVLQGCSPTVVTYTSLIRGACKAKKMKLAVRIWNAMLE-RKIQPTIVSYSV 278

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I GL   G +  A  V  EM     E++  IY++LI  L K+G  ++  A+ + MK  G
Sbjct: 279 IIDGLSKAGRVYDAYRVVREMETLGCELNVVIYTTLIDGLCKSGFLDDAYALYRIMKRSG 338

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             PN  TY  LI  FC+ +  E A  + D + D  C  +   Y  ++ GLC++
Sbjct: 339 AFPNQRTYATLIDTFCRNDRTETALGLFDHIRDY-CPLDVAMYTAVVSGLCRE 390



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 131/278 (47%), Gaps = 3/278 (1%)

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           IL  + H     P +  F ++I    ++  L  A +  + M    +   V  F  ++   
Sbjct: 81  ILATMLHSGTPPPNQHAFASLIDALSKSTRLADAARALELMRDAGIHPDVVTFTVMIRGF 140

Query: 129 LTCGKLDRMKELFQIMEKY--VSPDACSYNILIHGCVVSRRLEDAWKVFDEM-VKRRLQP 185
                ++R  E+FQ M K     PD   Y +LI G     R++ A ++  EM V+RR+QP
Sbjct: 141 CKNRMMERAWEIFQEMIKSNRCQPDCFLYGVLIDGYCKELRMDRALELLREMRVERRIQP 200

Query: 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
            +V + +++ GLC   R  EA K  ++ M +    P    + SLI+G C   ++ LA+ +
Sbjct: 201 DVVIYNSIVDGLCRSNRFLEAWKFLDETMVLQGCSPTVVTYTSLIRGACKAKKMKLAVRI 260

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
              M+  KI+     YS +I  L KAGR  +   +++EM+  GC+ N V Y  LI G CK
Sbjct: 261 WNAMLERKIQPTIVSYSVIIDGLSKAGRVYDAYRVVREMETLGCELNVVIYTTLIDGLCK 320

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               + A+ +   M   G   N  +Y  ++   C++ +
Sbjct: 321 SGFLDDAYALYRIMKRSGAFPNQRTYATLIDTFCRNDR 358



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 117/241 (48%), Gaps = 10/241 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L ++   D+    L+++   +   P +  +  +I  + R    E AL +
Sbjct: 307 NVVIYTTLIDGLCKSGFLDDAYA-LYRIMKRSGAFPNQRTYATLIDTFCRNDRTETALGL 365

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           FD +  +   + V  +  +++      +LD  + LF+ M    VS D  +YN+L+HG   
Sbjct: 366 FDHIRDY-CPLDVAMYTAVVSGLCRERRLDDARALFREMRLAGVSADTHAYNVLLHGAFR 424

Query: 165 SRRLEDAWKVFDEMVKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
           S R E+A+++ +E+         L+T+ T+I G CLE      + L  + MR   + PD 
Sbjct: 425 SERPEEAFRILEELGDDPGCVANLLTYNTVIAGCCLE----SGMVLFYE-MRQRGIAPDF 479

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             +++LI  L   GE+  A  + EEM+   +   +G+   +++ L  + R+ +  A + E
Sbjct: 480 ATYSALIDRLLGSGEIGRAFDLCEEMLASGLSPPSGVLGRVVARLCWS-RRGDLAAKVIE 538

Query: 284 M 284
           M
Sbjct: 539 M 539


>gi|255660784|gb|ACU25561.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 418

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 128/228 (56%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++  +  G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E ++D+A +L ++++    V P+G  F +LI G C 
Sbjct: 195 NAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLV-PNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 254 NGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGR 361



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 131/244 (53%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y +   L+   ++ + M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++  + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FDEMLDNXLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 289 KGDLKQAQDLIDE-MSMKGLKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP   TY  +I+ FCK+ D      +L EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407

Query: 320 GDKG 323
              G
Sbjct: 408 QRDG 411



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/267 (32%), Positives = 136/267 (50%), Gaps = 9/267 (3%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ ++++ +V  FNTL+N  +  G LD 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M+   V PD  +Y++LI+G     +++DA ++FDEM+   L P  VTF TLI 
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   RVD A+++ + ++   ++ PD   + +LI GLC  G+L  A  + +EM    ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI    K G         K M +   + + V Y ALISG C+E     A  +
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
           L EM   G K    +Y +I+   CK G
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 105/198 (53%), Gaps = 2/198 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           ++ A ++FDEM    +      F TL++     G++D   E++ Q++ + +SPD  +YN 
Sbjct: 222 MDDANELFDEMLDNXLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 281

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G      L+ A  + DEM  + L+P  +T+ TLI G C E  ++ A K ++ +++  
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKE- 340

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N++ D   + +LI GLC  G    A  +  EM+   ++ + G Y+ +I+   K G     
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400

Query: 278 PAILKEMKERGCKPNSVT 295
             +LKEM+  G  P+ VT
Sbjct: 401 SKLLKEMQRDGYMPSVVT 418



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE +          ++ L+ +  K G      ++   + +   +P+ V++N L+
Sbjct: 119 LVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ K  D +  F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 128/239 (53%), Gaps = 2/239 (0%)

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
           + ++M +  +   V  F+T+++     GK+    E+  +M ++ V PD  +Y  L+ G  
Sbjct: 253 LLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHC 312

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
           +   +++A KVFD MV++   P ++++ TLI G C   ++D+A+ L E++ R   + PD 
Sbjct: 313 LQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWI-PDT 371

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
           + + +L+ GLC VG L  A+ +  EMV      D   YS L+ +L K     E  A+LK 
Sbjct: 372 KTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKA 431

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++     P+   YN +I G C+  + EAA  +   +  KG   +  +YN+++ GLCK G
Sbjct: 432 IEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRG 490



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 127/265 (47%), Gaps = 2/265 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           + P  + +  ++  +     ++ A+++FD M        V  + TL+N      K+D+  
Sbjct: 297 VEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAM 356

Query: 139 ELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            LF+ M  K   PD  +YN L+HG     RL+DA  +F EMV R   P LVT+  L+  L
Sbjct: 357 YLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSL 416

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C    ++EA+ L + I    N+ PD QV+  +I G+C  GEL  A  +   +    +   
Sbjct: 417 CKNCHLEEAMALLKAI-EASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPS 475

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+ +I  L K G  NE   +  EM    C P+  TYN +  GF +  +   A  +L+
Sbjct: 476 VWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLE 535

Query: 318 EMGDKGCKANPISYNVILGGLCKDG 342
           EM  +G  A+  +  +++  L  DG
Sbjct: 536 EMLARGFSADVSTTTLLVEMLSDDG 560



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 131/298 (43%), Gaps = 41/298 (13%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++    + +     L +  +M SF V   V   N L+N   +   L+R+   
Sbjct: 54  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILIN---SFCHLNRVGFA 110

Query: 141 FQIMEKYV----SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           F ++ K +     PD  ++  LI G  V  ++ +A  +FD+M+    QP +VT+GTLI G
Sbjct: 111 FSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLING 170

Query: 197 LCLELRVDEALKL-------------------------KEDIMRVYN---------VKPD 222
           LC       A++L                            +   +N         + PD
Sbjct: 171 LCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPD 230

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + SL+  LC + E      +  +MV  KI  D  I+S+++ AL K G+  E   I+ 
Sbjct: 231 IFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVD 290

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            M +RG +P+ VTY  L+ G C + + + A  + D M  KG   + ISY  ++ G CK
Sbjct: 291 MMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCK 348



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 147/302 (48%), Gaps = 3/302 (0%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ N++ Y  +I  L +        ++L  ++      P  +I+ ++I    + R +  A
Sbjct: 157 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN-CQPDVVIYTSIIDSLCKDRQVTEA 215

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
             +F +M    +   +  + +L++      +   +  L  Q++   + PD   ++ ++  
Sbjct: 216 FNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDA 275

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                ++ +A ++ D M++R ++P +VT+ TL+ G CL+  +DEA+K+  D+M      P
Sbjct: 276 LCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVF-DMMVRKGFAP 334

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +LI G C + ++  A+ + EEM R +   D   Y++L+  L   GR  +  A+ 
Sbjct: 335 DVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALF 394

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM  RG  P+ VTY+ L+   CK    E A  +L  +       +   YN+I+ G+C+ 
Sbjct: 395 HEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRA 454

Query: 342 GK 343
           G+
Sbjct: 455 GE 456



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 139/299 (46%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y  ++  L     +  +  +L+Q+  +++I+P  +IF  V+    +   +  A ++
Sbjct: 230 DIFTYTSLVHALCNLCEWKHVTTLLNQMV-NSKILPDVVIFSTVVDALCKEGKVTEAHEI 288

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            D M    V+  V  + TL++      ++D   ++F +M  K  +PD  SY  LI+G   
Sbjct: 289 VDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCK 348

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +++ A  +F+EM ++   P   T+ TL++GLC   R+ +A+ L  + M      PD  
Sbjct: 349 IHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHE-MVARGQMPDLV 407

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++ L+  LC    L  A+ + + +    +  D  +Y+ +I  + +AG       +   +
Sbjct: 408 TYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNL 467

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G  P+  TYN +I G CK      A  +  EM    C  +  +YN I  G  ++ +
Sbjct: 468 SSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNE 526



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 1/174 (0%)

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           L+DA   F+ ++     P++V F  L+  +         L L    M  + V P+     
Sbjct: 37  LDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQ-MDSFGVPPNVYTLN 95

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            LI   C +  +  A  V  ++++   + D   +++LI  L   G+  E   +  +M + 
Sbjct: 96  ILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDE 155

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           G +PN VTY  LI+G CK  +  AA  +L  M    C+ + + Y  I+  LCKD
Sbjct: 156 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKD 209



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 9/145 (6%)

Query: 203 VDEALKLKEDIMRVYNVKPDGQV--FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
           +D+AL       R+ ++ P   +  FA L+  +  +   S  L +  +M  D   +   +
Sbjct: 37  LDDALS---SFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQM--DSFGVPPNV 91

Query: 261 YS--SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
           Y+   LI++     R     ++L ++ + G +P+  T+  LI G C E     A  + D+
Sbjct: 92  YTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDK 151

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M D+G + N ++Y  ++ GLCK G 
Sbjct: 152 MIDEGFQPNVVTYGTLINGLCKVGN 176


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 159/363 (43%), Gaps = 71/363 (19%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y L+I KLG    F  + ++L Q+K D   V KE +F  ++ +YG+A L  +A ++  +M
Sbjct: 97  YYLLIDKLGNVGEFKMIDKLLKQMK-DEGCVFKESLFILIMRYYGKAGLPGQATRLLLDM 155

Query: 110 ----------SSFNVQM--------------------------TVKFFNTLLNPKLTCGK 133
                      S+NV +                          TV  F  ++       +
Sbjct: 156 WGVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNE 215

Query: 134 LDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           +D    L + M K+   P++  Y +LIH    + R+ +A K+ +EM     +P + TF  
Sbjct: 216 VDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFND 275

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG-------- 244
           +I+GLC   R+ EA KL  D M + +   D  +   L+ GLC +G++  A          
Sbjct: 276 VIHGLCKAGRIHEAAKL-HDRMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIPNP 334

Query: 245 ------------------------VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
                                   + + MV    E DA  ++ +I  L K G        
Sbjct: 335 NTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEF 394

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L EM ++G +PN +TY  LI GFCK+  FE A  +++ M  KG   N + YN ++G LCK
Sbjct: 395 LDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCK 454

Query: 341 DGK 343
           DGK
Sbjct: 455 DGK 457



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 157/367 (42%), Gaps = 50/367 (13%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L R+ K  +    L K PNPN             YN L    +++  GR   F+E + +L
Sbjct: 315 LCRMGKVDEARAMLSKIPNPNT----------VLYNTLINGYVVS--GR---FEEAKDLL 359

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130
           ++        P    F  +I    +   L  AL+  DEM     +  V  +  L++    
Sbjct: 360 YKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCK 419

Query: 131 CGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
            G  +   ++   M  K +S +   YN LI       +++DA +++ EM  +  +P + T
Sbjct: 420 QGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYT 479

Query: 190 FGTLIYGLCLELRVDEALKLKEDI----------------------------------MR 215
           F +LIYGLC   +++EAL L  D+                                  MR
Sbjct: 480 FNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMR 539

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
                 D   +  LIK LC  G     LG+ E+M  ++I       + LI++  + G+ N
Sbjct: 540 FRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVN 599

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +    L++M +RG  P+ VTYN+LI+G CK   F+ A  + + +  KG   + ++YN ++
Sbjct: 600 DALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLI 659

Query: 336 GGLCKDG 342
              C +G
Sbjct: 660 SRYCYEG 666



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 125/265 (47%), Gaps = 5/265 (1%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           VP  II+  +I        +  A+++ +EM     +  V+ FN +++     G++    +
Sbjct: 232 VPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAK 291

Query: 140 LF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L  +++ +  + DA     L+HG     ++++A      M+ +   P  V + TLI G  
Sbjct: 292 LHDRMLLRDFTADALIQGYLMHGLCRMGKVDEA----RAMLSKIPNPNTVLYNTLINGYV 347

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
           +  R +EA  L    M +   +PD   F  +I GLC  G L  AL   +EMV+   E + 
Sbjct: 348 VSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNV 407

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y+ LI    K G   E   ++  M  +G   N+V YN LI   CK+   + A  +  E
Sbjct: 408 ITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGE 467

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M  KGCK +  ++N ++ GLCK+ K
Sbjct: 468 MSSKGCKPDIYTFNSLIYGLCKNDK 492



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 140/303 (46%), Gaps = 9/303 (2%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D   H   P   N + Y ++I  L      +E  ++L ++       P    F +VI   
Sbjct: 225 DMTKHGCVP---NSIIYQMLIHALSENNRVNEAMKLLEEM-FLMGCEPDVQTFNDVIHGL 280

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC 153
            +A  +  A ++ D M   +          L++     GK+D  + +   + K  +P+  
Sbjct: 281 CKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEARAM---LSKIPNPNTV 337

Query: 154 SYNILIHGCVVSRRLEDAWKV-FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            YN LI+G VVS R E+A  + +  MV    +P   TF  +I GLC +  +  AL+  ++
Sbjct: 338 LYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDE 397

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           +++    +P+   +  LI G C  G    A  V   M    + ++   Y+ LI AL K G
Sbjct: 398 MVK-KGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDG 456

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           +  +   +  EM  +GCKP+  T+N+LI G CK +  E A  +  +M  +G  AN ++YN
Sbjct: 457 KIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYN 516

Query: 333 VIL 335
            ++
Sbjct: 517 TLI 519



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 127/295 (43%), Gaps = 71/295 (24%)

Query: 120 FFNTLLNPKLTCGKLDRMKELF--QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
            +NTL+N  +  G+ +  K+L    ++     PDA ++NI+I G      L  A +  DE
Sbjct: 338 LYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDE 397

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK--------------------------- 210
           MVK+  +P ++T+  LI G C +   +EA K+                            
Sbjct: 398 MVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGK 457

Query: 211 -EDIMRVYN------VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
            +D +++Y        KPD   F SLI GLC   ++  ALG+  +M+ + +  +   Y++
Sbjct: 458 IQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNT 517

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK----------------EE 307
           LI A  +     +   ++ EM+ RGC  +++TYN LI   CK                EE
Sbjct: 518 LIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEE 577

Query: 308 DFEA-------------------AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            F +                   A   L +M  +G   + ++YN ++ GLCK G+
Sbjct: 578 IFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGR 632



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 143/302 (47%), Gaps = 3/302 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  N++ Y ++I    +   F+E  ++++ +      +      C +IG   +   ++
Sbjct: 401 KGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNC-LIGALCKDGKIQ 459

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILI 159
            ALQM+ EMSS   +  +  FN+L+       K++    L++ ++ + V  +  +YN LI
Sbjct: 460 DALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLI 519

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           H  +    ++ A K+  EM  R      +T+  LI  LC     ++ L L E  M    +
Sbjct: 520 HAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQ-MFGEEI 578

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P       LI   C  G+++ AL    +M++  +  D   Y+SLI+ L K GR  E   
Sbjct: 579 FPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALN 638

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +   ++ +G  P++VTYN LIS +C E  F  A  +L +    G   N I++++++    
Sbjct: 639 LFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEITWSILINYFV 698

Query: 340 KD 341
           K+
Sbjct: 699 KN 700


>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
          Length = 477

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 165/341 (48%), Gaps = 11/341 (3%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRA 60
           K   S ++A L + ++D + A+ +F       +   A     FR++   + L+I++L  A
Sbjct: 11  KQIGSAQVAQLIKAERDIQKAIVIF-------DSATAEYTNGFRHSHQTFSLMISRLVSA 63

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
             F   +++L ++K +   + ++I F ++   YGR      A+++F +M  +  + + K 
Sbjct: 64  NHFRLAEELLCRMKEEKCNITEDI-FLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKS 122

Query: 121 FNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG-CVVSRRLEDAWKVFDEM 178
           + T+    +   +L      ++ M E  + P   S N+LI   C  S  ++ A ++F EM
Sbjct: 123 YITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREM 182

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
             R   P   T+GTLI GLC   ++ EA +L ++ M      P    + SLI GLC   +
Sbjct: 183 PNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKE-METKACSPTVVTYXSLIHGLCQSKD 241

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           L  A+ + EEM    I+ +   YSSL+    K+G  +    +L  M  R   PN +TY+ 
Sbjct: 242 LDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYST 301

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           L+ G CKE   + A  ILD M  +G + +   Y  I+ G C
Sbjct: 302 LVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFC 342



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 128/280 (45%), Gaps = 45/280 (16%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           ++ AL++F EM +         + TL+      GK+   KELF+ ME K  SP   +Y  
Sbjct: 172 MDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMETKACSPTVVTYXS 231

Query: 158 LIHGCVVSRRLEDAWKVFDEM-----------------------------------VKRR 182
           LIHG   S+ L+ A ++ +EM                                   V RR
Sbjct: 232 LIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRR 291

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
             P ++T+ TL++GLC E ++ EA+++  D M++  ++PD  ++  +I G C + +   A
Sbjct: 292 HLPNMITYSTLVHGLCKEGKLQEAVEIL-DRMKLQGLRPDAGLYGKIISGFCDICKFHEA 350

Query: 243 LGVKEEMV-------RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
               +EMV       R    +   I++ ++  L        F   L  M+ RG   ++ T
Sbjct: 351 ANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYL-SMRTRGISIDAKT 409

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +++L++ FC + D   A  ++DEM   GC  +  ++N ++
Sbjct: 410 FDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPDEXTWNAVV 449



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 2/174 (1%)

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           DA +VF +M +   +P+  ++ T+   L  E ++  AL+     MR   + P       L
Sbjct: 103 DAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYR-YMREMGIPPSVASLNVL 161

Query: 230 IKGLCA-VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           IK LC   G +  AL +  EM        +  Y +LI  L + G+  E   + KEM+ + 
Sbjct: 162 IKALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMETKA 221

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           C P  VTY +LI G C+ +D ++A  +L+EM  KG K N  +Y+ ++ G CK G
Sbjct: 222 CSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSG 275



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 122/293 (41%), Gaps = 58/293 (19%)

Query: 21  ALQLFKN-PNPNPNDTEAHPLKPFRYNLLHYDLI-ITKLGRAK-MFDEMQQILHQLKHDT 77
           AL++F+  PN         P   + Y  L   L  + K+G AK +F EM+          
Sbjct: 175 ALRIFREMPN------RGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMET--------K 220

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
              P  + + ++I    +++ L+ A+++ +EM+S  ++  V  +++L++     G   R 
Sbjct: 221 ACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRA 280

Query: 138 KELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
            EL  +M  +   P+  +Y+ L+HG     +L++A ++ D M  + L+P    +G +I G
Sbjct: 281 LELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISG 340

Query: 197 LCLELRVDEALKLKEDI----------------------------------------MRV 216
            C   +  EA    +++                                        MR 
Sbjct: 341 FCDICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRT 400

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
             +  D + F SL+   C  G+L  A  + +EMV D    D   +++++ A +
Sbjct: 401 RGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPDEXTWNAVVCAFW 453



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 52/119 (43%)

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
           Q F+ +I  L +     LA  +   M  +K  +   I+ S+  A  +  +  +   + ++
Sbjct: 51  QTFSLMISRLVSANHFRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDAVRVFRK 110

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           MKE  C+P+  +Y  + +    E   + A      M + G   +  S NV++  LCK+ 
Sbjct: 111 MKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNS 169


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 131/264 (49%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  +I +  +     +A+++FD+M +   +  V  + T++N     G+      L
Sbjct: 166 PTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGL 225

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
            + ME+    P+  +Y+ +I      RR+ +A  +F  M  + + P + T+ +LI GLC 
Sbjct: 226 LKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCN 285

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             +  EA  L  + MR  N+ PD   F  L+  +C  G++S A GV + M    +E D  
Sbjct: 286 FSQWKEASALLNE-MRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVV 344

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YSSL+          E   +   M  +GCKP+  +YN LI+G+CK +  + A  + +EM
Sbjct: 345 TYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEM 404

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             +G   N +SYN ++ GLC+ G 
Sbjct: 405 IHQGLTPNNVSYNTLIHGLCQLGS 428



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 139/288 (48%), Gaps = 5/288 (1%)

Query: 54  ITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFN 113
           I K+G  + +D +  +  Q++    + P       +I  +   + ++ A  +  ++    
Sbjct: 107 IVKMG--QYYDTVISLTKQMEL-AGLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLG 163

Query: 114 VQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAW 172
           +Q T+  F TL+N     GK  +  ELF  M  +   PD  +Y  +I+G         A 
Sbjct: 164 LQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAA 223

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
            +  +M +   QP +VT+ T+I     + RV+EAL +    M+V  + PD   + SLI+G
Sbjct: 224 GLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFS-YMKVKGISPDIFTYNSLIQG 282

Query: 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
           LC   +   A  +  EM    I  D   ++ L+  + K G+ +E   +LK M E G +P+
Sbjct: 283 LCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPD 342

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            VTY++L+ G+    +   A  + D M  KGCK +  SYN+++ G CK
Sbjct: 343 VVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCK 390



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 133/245 (54%), Gaps = 9/245 (3%)

Query: 107 DEMSSFNVQMTVK------FFNTLLNPKLTCGKL-DRMKELFQIME-KYVSPDACSYNIL 158
           D ++SFN  +  K       F  LL+  +  G+  D +  L + ME   +SP+  + +IL
Sbjct: 80  DALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSIL 139

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+     +R++ A+ V  +++K  LQPT+VTF TLI  LC   +  +A++L +D M    
Sbjct: 140 INCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDD-MVARG 198

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
            +PD   + ++I GLC +GE + A G+ ++M     + +   YS++I +  K  R NE  
Sbjct: 199 CRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEAL 258

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            I   MK +G  P+  TYN+LI G C    ++ A  +L+EM       + +++NV++  +
Sbjct: 259 DIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTI 318

Query: 339 CKDGK 343
           CK+GK
Sbjct: 319 CKEGK 323



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 140/298 (46%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  II    + +  +E   I   +K    I P    + ++I         + A  +
Sbjct: 237 NVVTYSTIIDSHRKDRRVNEALDIFSYMKVKG-ISPDIFTYNSLIQGLCNFSQWKEASAL 295

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            +EM S N+   +  FN L++     GK+   + + + M E  V PD  +Y+ L++G  +
Sbjct: 296 LNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSL 355

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              + +A K+FD M+ +  +P + ++  LI G C   R+DEA +L  +++    + P+  
Sbjct: 356 RSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIH-QGLTPNNV 414

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI GLC +G L  A  + + M  +    +   YS L+    K G   +   + + M
Sbjct: 415 SYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAM 474

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +    KPN V YN LI   CK  +   A  +  E+  KG + N   Y  I+ GLCK+G
Sbjct: 475 QSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEG 532



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 147/284 (51%), Gaps = 5/284 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           +++ +++++  + +     E Q +L  +  +  + P  + + +++ G+  R+ ++E A +
Sbjct: 307 DIVTFNVLVDTICKEGKVSEAQGVLKTMT-EMGVEPDVVTYSSLMYGYSLRSEVVE-ARK 364

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCV 163
           +FD M +   +  V  +N L+N      ++D  K+LF +++ + ++P+  SYN LIHG  
Sbjct: 365 LFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLC 424

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
               L +A  +F  M      P L T+  L+ G C +    +A +L   +   Y+ KP+ 
Sbjct: 425 QLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYS-KPNL 483

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
            ++  LI  +C  G L  A  +  E+    ++ +A IY+++I+ L K G  +E     + 
Sbjct: 484 VMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRN 543

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           M+E GC P+ ++YN +I GF   +D   A  ++ EM DKG  A+
Sbjct: 544 MEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIAD 587



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 146/294 (49%), Gaps = 3/294 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y+ +I  L     + E   +L++++    I+P  + F  ++    +   +  A  +
Sbjct: 272 DIFTYNSLIQGLCNFSQWKEASALLNEMR-SLNIMPDIVTFNVLVDTICKEGKVSEAQGV 330

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
              M+   V+  V  +++L+       ++   ++LF  M  K   PD  SYNILI+G   
Sbjct: 331 LKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCK 390

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            +R+++A ++F+EM+ + L P  V++ TLI+GLC    + EA  L +++    N+ P+  
Sbjct: 391 VKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNL-PNLF 449

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++ L+ G C  G    A  +   M     + +  +Y+ LI A+ K+G   +   +  E+
Sbjct: 450 TYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSEL 509

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             +G +PN+  Y  +I+G CKE   + A      M + GC  + ISYNVI+ G 
Sbjct: 510 FVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGF 563



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 2/263 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  +I  + + R +  AL +F  M    +   +  +N+L+       +      L
Sbjct: 236 PNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASAL 295

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
              M    + PD  ++N+L+       ++ +A  V   M +  ++P +VT+ +L+YG  L
Sbjct: 296 LNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSL 355

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
              V EA KL  D M     KPD   +  LI G C V  +  A  +  EM+   +  +  
Sbjct: 356 RSEVVEARKLF-DAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNV 414

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI  L + G   E   + K M   G  PN  TY+ L+ GFCK+  F  AF +   M
Sbjct: 415 SYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAM 474

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
                K N + YN+++  +CK G
Sbjct: 475 QSTYSKPNLVMYNILIDAMCKSG 497


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 155/307 (50%), Gaps = 8/307 (2%)

Query: 39  PLKPFRYNLLHYDLIITKL-GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           P++P  Y    Y+ +I  L GR +  + +  +   L+   R VP  + +  ++    +  
Sbjct: 27  PVEPDAYT---YNTLIRGLCGRGRTANALAVLDEMLRR--RCVPDVVTYTILLEATCKRS 81

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYN 156
             ++A+++ DEM        +  +N ++N     G++D   E  + +  Y   P+  SYN
Sbjct: 82  GYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYN 141

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           I++ G   + R EDA ++  EM ++   P +VTF  LI  LC +  V+ AL++ E I + 
Sbjct: 142 IVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPK- 200

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           Y   P+   +  L+   C   ++  A+   + MV      D   Y++L++AL ++G  + 
Sbjct: 201 YGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDV 260

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +L ++K++GC P  ++YN +I G  K    + A  +L+EM  KG + + I+Y+ I  
Sbjct: 261 AVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAA 320

Query: 337 GLCKDGK 343
           GLC++ +
Sbjct: 321 GLCREDR 327



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 133/258 (51%), Gaps = 10/258 (3%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK---LDRMKELFQIME 145
           V G+ G  +L + A ++  EM    V+     +NTL+  +  CG+    + +  L +++ 
Sbjct: 7   VAGYCGAGQL-DAARRLVAEMP---VEPDAYTYNTLI--RGLCGRGRTANALAVLDEMLR 60

Query: 146 KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
           +   PD  +Y IL+         + A K+ DEM  +   P +VT+  ++ G+C E RVD+
Sbjct: 61  RRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDD 120

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           A++  +++   Y  +P+   +  ++KGLC       A  +  EM +     +   ++ LI
Sbjct: 121 AIEFLKNLPS-YGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLI 179

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
           S L + G       +L+++ + GC PNS++YN L+  FCK++  + A   LD M  +GC 
Sbjct: 180 SFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCY 239

Query: 326 ANPISYNVILGGLCKDGK 343
            + +SYN +L  LC+ G+
Sbjct: 240 PDIVSYNTLLTALCRSGE 257



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 141/298 (47%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y++++  + +    D+  + L  L       P  + +  V+     A   E A ++
Sbjct: 101 DIVTYNVVVNGICQEGRVDDAIEFLKNLPS-YGCEPNTVSYNIVLKGLCTAERWEDAEEL 159

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
             EM        V  FN L++     G ++   E+ + + KY  +P++ SYN L+H    
Sbjct: 160 MGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCK 219

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            ++++ A    D MV R   P +V++ TL+  LC    VD A++L    ++     P   
Sbjct: 220 QKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQ-LKDKGCAPVLI 278

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + ++I GL   G+   AL +  EMV   ++ D   YS++ + L +  R  +      ++
Sbjct: 279 SYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKV 338

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++ G +PN+V YNA+I G CK  +  +A  +   M   GC  N  +Y +++ GL  +G
Sbjct: 339 QDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEG 396



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 102/189 (53%), Gaps = 4/189 (2%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN ++ G   + +L+ A ++  EM    ++P   T+ TLI GLC   R   AL + +++
Sbjct: 2   AYNAMVAGYCGAGQLDAARRLVAEM---PVEPDAYTYNTLIRGLCGRGRTANALAVLDEM 58

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           +R   V PD   +  L++  C       A+ + +EM       D   Y+ +++ + + GR
Sbjct: 59  LRRRCV-PDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGR 117

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            ++    LK +   GC+PN+V+YN ++ G C  E +E A  ++ EMG KGC  N +++N+
Sbjct: 118 VDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNM 177

Query: 334 ILGGLCKDG 342
           ++  LC+ G
Sbjct: 178 LISFLCRKG 186



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 4/152 (2%)

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           + +  ++ G C   ++D A +L  ++     V+PD   + +LI+GLC  G  + AL V +
Sbjct: 1   MAYNAMVAGYCGAGQLDAARRLVAEM----PVEPDAYTYNTLIRGLCGRGRTANALAVLD 56

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           EM+R +   D   Y+ L+ A  K     +   +L EM+++GC P+ VTYN +++G C+E 
Sbjct: 57  EMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEG 116

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
             + A   L  +   GC+ N +SYN++L GLC
Sbjct: 117 RVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLC 148



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 3/119 (2%)

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +++ G C  G+L  A  +  EM    +E DA  Y++LI  L   GR     A+L EM
Sbjct: 2   AYNAMVAGYCGAGQLDAARRLVAEM---PVEPDAYTYNTLIRGLCGRGRTANALAVLDEM 58

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             R C P+ VTY  L+   CK   ++ A  +LDEM DKGC  + ++YNV++ G+C++G+
Sbjct: 59  LRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGR 117



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 124/244 (50%), Gaps = 3/244 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ ++++I+ L R  + +   ++L Q+       P  + +  ++  + + + +++A+  
Sbjct: 171 NVVTFNMLISFLCRKGLVEPALEVLEQIPK-YGCTPNSLSYNPLLHAFCKQKKMDKAMAF 229

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            D M S      +  +NTLL      G++D   EL  Q+ +K  +P   SYN +I G   
Sbjct: 230 LDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTK 289

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + + ++A ++ +EMV + LQP ++T+ T+  GLC E R+++A++    +  +  ++P+  
Sbjct: 290 AGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDM-GIRPNTV 348

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++ ++I GLC   E   A+ +   M+ +    +   Y+ LI  L   G   E   +L E+
Sbjct: 349 LYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDEL 408

Query: 285 KERG 288
             R 
Sbjct: 409 CSRA 412


>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 789

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 160/335 (47%), Gaps = 17/335 (5%)

Query: 13  RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYN---LLHYDLIITKLGRAKMFDEMQQI 69
           R Q D ++AL  F   +           + +RY+   L++Y L+   L + K+    +++
Sbjct: 171 RSQADERVALNFFYWAD-----------RQWRYSHHPLVYYTLLDV-LSKTKLCQGARRV 218

Query: 70  LHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL 129
           L  +      +  E   C ++  Y RA  L  AL++   M    V+  +   NT +   +
Sbjct: 219 LRLMTRRGIELSPEAFGCVMVS-YSRAGKLRNALRVLTLMQKAGVEPNLSICNTTIYVLV 277

Query: 130 TCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
              KL++     + M+   + PD  +YN LI G     R+EDA ++   +  +   P  V
Sbjct: 278 KGCKLEKALRFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKV 337

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           ++ T++  LC E ++++   L E +++  N+ PD   + +LI  L   G    AL   +E
Sbjct: 338 SYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKHGHADDALAFLKE 397

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
                  +D   YS+++ +  + GR +E  +++ +M  R C P+ VTY A++ GFC+   
Sbjct: 398 AEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIVDGFCRLGR 457

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + A  +L +M   GCK N +SY  +L GLC  GK
Sbjct: 458 IDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGK 492



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 140/308 (45%), Gaps = 15/308 (4%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  + + Y  I+    +    DE + ++  + +     P  + +  ++  + R   ++
Sbjct: 401 KGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDM-YSRSCNPDVVTYTAIVDGFCRLGRID 459

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILI 159
            A +M  +M     +     +  LLN     GK    +E+  + E+ + +P+A +Y +++
Sbjct: 460 EAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGVVM 519

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR---V 216
           HG     +L +A  +  EMV++   PT V    LI  LC   +V EA K  E+ +     
Sbjct: 520 HGFRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCA 579

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
            NV      F ++I G C +G++  AL V E+M       DA  Y++L  AL K GR +E
Sbjct: 580 INVVN----FTTVIHGFCQIGDMEAALSVLEDMYLSNKHPDAVTYTALFDALGKKGRLDE 635

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS--YNVI 334
              ++ +M  +G  P  VT+ ++I  +C+    +    +LD M     K  P    YN +
Sbjct: 636 AAELIVKMLSKGLDPTPVTFRSVIHRYCQWGRVDDMLNLLDRM----VKRKPFRTIYNHV 691

Query: 335 LGGLCKDG 342
           +  LC  G
Sbjct: 692 IEKLCDFG 699



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 136/295 (46%), Gaps = 2/295 (0%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  ++  L + K  ++++ ++ ++  D+ ++P ++ +  +I    +    + AL    E 
Sbjct: 339 YYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEA 398

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIHGCVVSRRL 168
                 +    ++ +++     G++D  K L   +  +  +PD  +Y  ++ G     R+
Sbjct: 399 EDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIVDGFCRLGRI 458

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           ++A K+  +M K   +P  V++  L+ GLC   +  EA ++  ++   +   P+   +  
Sbjct: 459 DEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMI-NVSEEHWWTPNAITYGV 517

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           ++ G    G+LS A  +  EMV           + LI +L +  +  E    L+E   +G
Sbjct: 518 VMHGFRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKG 577

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C  N V +  +I GFC+  D EAA ++L++M       + ++Y  +   L K G+
Sbjct: 578 CAINVVNFTTVIHGFCQIGDMEAALSVLEDMYLSNKHPDAVTYTALFDALGKKGR 632



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 133/290 (45%), Gaps = 10/290 (3%)

Query: 56  KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ 115
           KL +A  F E  Q+       T I P  + + ++I  Y     +E AL++   + S    
Sbjct: 281 KLEKALRFLERMQV-------TGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCP 333

Query: 116 MTVKFFNTLLNPKLTCGKLDRMKELFQIM--EKYVSPDACSYNILIHGCVVSRRLEDAWK 173
                + T++       K++++K L + M  +  + PD  +YN LIH        +DA  
Sbjct: 334 PDKVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKHGHADDALA 393

Query: 174 VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGL 233
              E   +      V +  +++  C + R+DEA  L  D M   +  PD   + +++ G 
Sbjct: 394 FLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVID-MYSRSCNPDVVTYTAIVDGF 452

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           C +G +  A  + ++M +   + +   Y++L++ L  +G+  E   ++   +E    PN+
Sbjct: 453 CRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNA 512

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +TY  ++ GF +E     A  +  EM +KG    P+  N+++  LC++ K
Sbjct: 513 ITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQK 562



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 8/180 (4%)

Query: 116 MTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS---PDACSYNILIHGCVVSRRLEDAW 172
           + V  F T+++     G ++    + + M  Y+S   PDA +Y  L        RL++A 
Sbjct: 580 INVVNFTTVIHGFCQIGDMEAALSVLEDM--YLSNKHPDAVTYTALFDALGKKGRLDEAA 637

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
           ++  +M+ + L PT VTF ++I+  C   RVD+ L L +   R+   KP   ++  +I+ 
Sbjct: 638 ELIVKMLSKGLDPTPVTFRSVIHRYCQWGRVDDMLNLLD---RMVKRKPFRTIYNHVIEK 694

Query: 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
           LC  G L  A  +  +++R   ++DA     L+ +  K G       +  +M  R   P+
Sbjct: 695 LCDFGNLEEAEKLLGKVLRTASKLDANTCHVLMESCLKKGVALSAYKVACQMFRRNLTPD 754


>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
           [Vitis vinifera]
 gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 164/341 (48%), Gaps = 11/341 (3%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRA 60
           K   S ++A L + ++D + A+ +F       +   A     FR++   + L+I++L  A
Sbjct: 11  KQIGSAQVAQLIKAERDIQKAIVIF-------DSATAEYTNGFRHSHQTFSLMISRLVSA 63

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
             F   +++L ++K + +    E IF ++   YGR      A+++F +M  +  + + K 
Sbjct: 64  NHFRLAEELLCRMKEE-KCNITEDIFLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKS 122

Query: 121 FNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG-CVVSRRLEDAWKVFDEM 178
           + T+    +   +L      ++ M E  + P   S N+LI   C  S  ++ A ++F EM
Sbjct: 123 YITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREM 182

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
             R   P   T+GTLI GLC   ++ EA +L ++ M      P    + SLI GLC   +
Sbjct: 183 PNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKE-METKACSPTVVTYTSLIHGLCQSKD 241

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           L  A+ + EEM    I+ +   YSSL+    K+G  +    +L  M  R   PN +TY+ 
Sbjct: 242 LDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYST 301

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           L+ G CKE   + A  ILD M  +G + +   Y  I+ G C
Sbjct: 302 LVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFC 342



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 130/280 (46%), Gaps = 45/280 (16%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           ++ AL++F EM +         + TL+N     GK+   KELF+ ME K  SP   +Y  
Sbjct: 172 MDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKACSPTVVTYTS 231

Query: 158 LIHGCVVSRRLEDAWKVFDEM-----------------------------------VKRR 182
           LIHG   S+ L+ A ++ +EM                                   V RR
Sbjct: 232 LIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRR 291

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
             P ++T+ TL++GLC E ++ EA+++  D M++  ++PD  ++  +I G C + +   A
Sbjct: 292 HLPNMITYSTLVHGLCKEGKLQEAVEIL-DRMKLQGLRPDAGLYGKIISGFCDICKFHEA 350

Query: 243 LGVKEEMV-------RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
               +EMV       R    +   I++ ++  L        F   L  M+ RG   ++ T
Sbjct: 351 ANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYL-SMRTRGISIDAKT 409

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +++L++ FC + D   A  ++DEM   GC  + +++N ++
Sbjct: 410 FDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPDEVTWNAVV 449



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 2/174 (1%)

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           DA +VF +M +   +P+  ++ T+   L  E ++  AL+     MR   + P       L
Sbjct: 103 DAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYR-YMREMGIPPSVASLNVL 161

Query: 230 IKGLCA-VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           IK LC   G +  AL +  EM       D+  Y +LI+ L + G+  E   + KEM+ + 
Sbjct: 162 IKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKA 221

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           C P  VTY +LI G C+ +D ++A  +L+EM  KG K N  +Y+ ++ G CK G
Sbjct: 222 CSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSG 275



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/295 (19%), Positives = 114/295 (38%), Gaps = 77/295 (26%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L R     E +++  +++      P  + + ++I    +++ L+ A+++ +EM
Sbjct: 194 YGTLINGLCRLGKIGEAKELFKEMETKA-CSPTVVTYTSLIHGLCQSKDLDSAIRLLEEM 252

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
           +S  ++  V  +++L++     G   R  EL  +M  +   P+  +Y+ L+HG     +L
Sbjct: 253 ASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKL 312

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--------------- 213
           ++A ++ D M  + L+P    +G +I G C   +  EA    +++               
Sbjct: 313 QEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLH 372

Query: 214 -------------------------MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
                                    MR   +  D + F SL+   C  G+L  A  + +E
Sbjct: 373 VRIHNIVVQGLCTEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVDE 432

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
           MV D                                   GC P+ VT+NA++  F
Sbjct: 433 MVLD-----------------------------------GCIPDEVTWNAVVCAF 452



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 52/119 (43%)

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
           Q F+ +I  L +     LA  +   M  +K  +   I+ S+  A  +  +  +   + ++
Sbjct: 51  QTFSLMISRLVSANHFRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDAVRVFRK 110

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           MKE  C+P+  +Y  + +    E   + A      M + G   +  S NV++  LCK+ 
Sbjct: 111 MKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNS 169


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 154/336 (45%), Gaps = 42/336 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I  L  +K  DE  ++  +LK      P  + +  VI    +A  +E  L+ 
Sbjct: 107 DVISYTTVIKGLADSKRIDEACELFEELK-TAGCSPNVVAYTAVIDGLLKAGRIEDGLKN 165

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           F+EMS  +   T   +  +++       L D  K   Q+++K   PD  +Y  LI G   
Sbjct: 166 FEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSK 225

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--MRVYNVKPD 222
           + ++++A K+ D M+ +  +PT VT+G++++G C    ++EA   KE I  MR    +P 
Sbjct: 226 ASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEA---KEVIAQMRERGCEPG 282

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
             +F SL+    + G    A  V  EM       D  +Y+SLI  LF  GR  E   +  
Sbjct: 283 LFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFD 342

Query: 283 EMKERGCKPNSVT-----------------------------------YNALISGFCKEE 307
            M E+GC P+++T                                   YN+L+ G+ K E
Sbjct: 343 SMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLE 402

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             + AF + D M   G K N +++NV++ GL KDGK
Sbjct: 403 RVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGK 438



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 144/299 (48%), Gaps = 8/299 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +LL Y L     GRA   +E  Q+L ++       P  I++ ++I        +  A  +
Sbjct: 288 SLLSYYL---SKGRA---EEAYQVLTEMTA-RGCAPDVILYTSLIDLLFSTGRVPEARHV 340

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           FD M           + T++      G ++   E+ ++M K  V PD  +YN L+ G V 
Sbjct: 341 FDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVK 400

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R++ A+ V+D MV   ++P  VTF  L++GL  + + D A  L ++++    V P   
Sbjct: 401 LERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLV 460

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LI GL   G +S A    +EM+   I  +   Y+SLI +L KAGR  E   ++++M
Sbjct: 461 SYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDM 520

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + G  P+   Y+ALI+G       + A+ +  EM  +GC  N ++Y V+  G    G+
Sbjct: 521 VKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGR 579



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 92/191 (48%), Gaps = 5/191 (2%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P   SYN +I G     ++++A+K F+ M+    +P ++ F TLI+G C   +     KL
Sbjct: 5   PTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKL 64

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
               ++ +  +PD  ++ S+I G C  G+L          V  K  +D   Y+++I  L 
Sbjct: 65  LNQALKRF--RPDVFLYTSVIHGYCKAGDLDTGY---FRAVTPKASLDVISYTTVIKGLA 119

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
            + R +E   + +E+K  GC PN V Y A+I G  K    E      +EM    C     
Sbjct: 120 DSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRT 179

Query: 330 SYNVILGGLCK 340
           +Y V++ GLCK
Sbjct: 180 TYTVVIDGLCK 190



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 141/305 (46%), Gaps = 19/305 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA-------RL 98
            ++ Y+ +I+ L      DE  +  + +  D    P  I F  +I  + +A       +L
Sbjct: 6   TIVSYNTVISGLASIDKMDEAYKFFNSMI-DNGCEPDVIAFTTLIHGFCKAGQPQVGHKL 64

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL 158
           L +AL+ F        +  V  + ++++     G LD     F+ +    S D  SY  +
Sbjct: 65  LNQALKRF--------RPDVFLYTSVIHGYCKAGDLD--TGYFRAVTPKASLDVISYTTV 114

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   S+R+++A ++F+E+      P +V +  +I GL    R+++ LK  E+ M   +
Sbjct: 115 IKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEE-MSGSS 173

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
             P    +  +I GLC    L  A  V E+MV+     D   Y++LI    KA + +E  
Sbjct: 174 CVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEAR 233

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +L  M  +G +P +VTY +++ GFCK +    A  ++ +M ++GC+     +  +L   
Sbjct: 234 KLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYY 293

Query: 339 CKDGK 343
              G+
Sbjct: 294 LSKGR 298



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 132/279 (47%), Gaps = 7/279 (2%)

Query: 68  QILHQLKHDT--RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125
           Q+ H+L +    R  P   ++ +VI  Y +A  L+     +    +    + V  + T++
Sbjct: 59  QVGHKLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTG---YFRAVTPKASLDVISYTTVI 115

Query: 126 NPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ 184
                  ++D   ELF+ ++    SP+  +Y  +I G + + R+ED  K F+EM      
Sbjct: 116 KGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCV 175

Query: 185 PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
           PT  T+  +I GLC    + +A K+ E +++   V PD   + +LI G     ++  A  
Sbjct: 176 PTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCV-PDTITYTTLIDGFSKASKMDEARK 234

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           + + M+    E  A  Y S++    K    NE   ++ +M+ERGC+P    + +L+S + 
Sbjct: 235 LLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYL 294

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +   E A+ +L EM  +GC  + I Y  ++  L   G+
Sbjct: 295 SKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGR 333



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 115/260 (44%), Gaps = 4/260 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  VI        ++ A + F+ M     +  V  F TL++     G+     +L
Sbjct: 5   PTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKL 64

Query: 141 FQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
                K   PD   Y  +IHG   +  L+  +      V  +    ++++ T+I GL   
Sbjct: 65  LNQALKRFRPDVFLYTSVIHGYCKAGDLDTGYF---RAVTPKASLDVISYTTVIKGLADS 121

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            R+DEA +L E+ ++     P+   + ++I GL   G +   L   EEM           
Sbjct: 122 KRIDEACELFEE-LKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTT 180

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
           Y+ +I  L KA    +   + ++M ++GC P+++TY  LI GF K    + A  +LD M 
Sbjct: 181 YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVML 240

Query: 321 DKGCKANPISYNVILGGLCK 340
            KG +   ++Y  I+ G CK
Sbjct: 241 TKGPEPTAVTYGSIVHGFCK 260



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 4/162 (2%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           A  +KP   N + +++++  L +    D    +  ++     + P  + +  +I   G+A
Sbjct: 416 ASGIKP---NAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKA 472

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSY 155
             +  A   F EM    +      + +L+      G++   K+L + M K  V+PD  +Y
Sbjct: 473 GRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAY 532

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           + LI G + S  ++ AW VF EM+KR   P  VT+  L  G 
Sbjct: 533 SALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGF 574



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 33/56 (58%)

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           GC+P  V+YN +ISG    +  + A+   + M D GC+ + I++  ++ G CK G+
Sbjct: 2   GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQ 57


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 131/258 (50%), Gaps = 2/258 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +IF  +I    R    E A  +  EM        V   N+L+    + GK+D+++++
Sbjct: 108 PDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKI 167

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +M  K + PD  SY+I I+G     ++++A ++FDEM  R + P  VT+ TLI  LC 
Sbjct: 168 FHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQ 227

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
            LR  +A  L    M    + PD   +++L+ G C  G L   L + +EM R  ++ D  
Sbjct: 228 ALRPRDAQVLFRK-MCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLV 286

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           +Y+ +I+ + ++ +  +   +L  +   G KP+  TY AL+ G C+E     A  +  +M
Sbjct: 287 VYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKM 346

Query: 320 GDKGCKANPISYNVILGG 337
            + GC     SYNV+L G
Sbjct: 347 EEDGCMPGSCSYNVLLQG 364



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 129/251 (51%), Gaps = 5/251 (1%)

Query: 83  EIIFCNVI--GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           +++ CN +  G+  + ++ ++  ++F  M S  ++  V  ++  +N      K+D   EL
Sbjct: 144 DVVTCNSLMRGYCSQGKI-DKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMEL 202

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F  M  + V P+A +YN LI     + R  DA  +F +M    L P ++ + TL+ G C 
Sbjct: 203 FDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCK 262

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  +DE L L +++ R   VKPD  V+  +I G+C   ++  A  V   ++ + ++ D  
Sbjct: 263 QGNLDEMLVLFQEMQRRL-VKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVH 321

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++L+  L + G   E   + ++M+E GC P S +YN L+ G  +  D      ++ EM
Sbjct: 322 TYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHEM 381

Query: 320 GDKGCKANPIS 330
            D+G  A+ ++
Sbjct: 382 ADRGFYADAVT 392



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 124/253 (49%), Gaps = 5/253 (1%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVS 149
           G++G    L+ AL  F+ M   N Q  +  FN LL+  +   K + +  LF+ ME + + 
Sbjct: 16  GYFGN---LDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIK 72

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
            + C+ +ILI+       ++  + VF + +KR  +P +V F TLI G+C   + + A  L
Sbjct: 73  YNVCTLSILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGL 132

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            ++ M +    PD     SL++G C+ G++     +   MV   ++ D   YS  I+   
Sbjct: 133 LKE-MGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYC 191

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           K  + +E   +  EM  RG  PN+VTYN LI   C+      A  +  +M   G   + +
Sbjct: 192 KVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDIL 251

Query: 330 SYNVILGGLCKDG 342
           +Y+ +L G CK G
Sbjct: 252 AYSTLLDGFCKQG 264



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 14/244 (5%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP  Y+   Y + I    + +  DE  ++  ++ H   +VP  + +  +I    +A   
Sbjct: 176 LKPDVYS---YSIFINGYCKVEKIDEAMELFDEMSHRG-VVPNAVTYNTLIKALCQALRP 231

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNIL 158
             A  +F +M +  +   +  ++TLL+     G LD M  LFQ M+ + V PD   Y I+
Sbjct: 232 RDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTII 291

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G   SR+++DA +V   ++   L+P + T+  L+ GLC E  + EAL+L    M    
Sbjct: 292 INGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRK-MEEDG 350

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG--RKNE 276
             P    +  L++G     + S  + +  EM       D G Y+  ++  F       N+
Sbjct: 351 CMPGSCSYNVLLQGCLQHNDTSTVVQLIHEMA------DRGFYADAVTRTFLKDFLPGND 404

Query: 277 FPAI 280
            PAI
Sbjct: 405 SPAI 408


>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 418

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 128/228 (56%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++  +  G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E ++D+A +L ++++    + P+G  F +LI G C 
Sbjct: 195 NAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD-NGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 254 NGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGR 361



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 131/244 (53%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y +   L+   ++ + M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++  + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 289 KGDLKQAQDLIDE-MSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP   TY  +I+ FCK+ D      +L EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407

Query: 320 GDKG 323
              G
Sbjct: 408 QRDG 411



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 87/267 (32%), Positives = 136/267 (50%), Gaps = 9/267 (3%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ ++++ +V  FNTL+N  +  G LD 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M+   V PD  +Y++LI+G     +++DA ++FDEM+   L P  VTF TLI 
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   RVD A+++ + ++   ++ PD   + +LI GLC  G+L  A  + +EM    ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI    K G         K M +   + + V Y ALISG C+E     A  +
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
           L EM   G K    +Y +I+   CK G
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 2/198 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           ++ A ++FDEM    +      F TL++     G++D   E++ Q++ + +SPD  +YN 
Sbjct: 222 MDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 281

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G      L+ A  + DEM  + L+P  +T+ TLI G C E  ++ A + ++ +++  
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKE- 340

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N++ D   + +LI GLC  G    A  +  EM+   ++ + G Y+ +I+   K G     
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400

Query: 278 PAILKEMKERGCKPNSVT 295
             +LKEM+  G  P+ VT
Sbjct: 401 SKLLKEMQRDGYMPSVVT 418



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE +          ++ L+ +  K G      ++   + +   +P+ V++N L+
Sbjct: 119 LVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ K  D +  F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221


>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 528

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 128/253 (50%), Gaps = 3/253 (1%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY- 147
           +I   G+ R  +   Q+ D M + NV+++++ F+ L+   +  G        F  ME Y 
Sbjct: 148 MIDLAGKVRNFDLGWQVIDLMKARNVEISIETFSILIRRYVRAGLASEAVHAFNRMEDYN 207

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
             PD  +++ILI      RR  +A   FD + K + +P ++ +  L+ G C    + EA 
Sbjct: 208 CKPDKIAFSILISILCRKRRATEAQSFFDSL-KDKFEPDVIVYTNLVRGWCRAGNIPEAE 266

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           ++  + M+V    P+   +  +I  LC  G+++ A  V  EM+    E ++  +++L+  
Sbjct: 267 RVFTE-MKVAGCMPNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRV 325

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
             KAGR  +   +  +MK  GC P++VTYN LI   CK+ + + A  +L+ M  KGC  N
Sbjct: 326 HVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPN 385

Query: 328 PISYNVILGGLCK 340
             ++N + G + K
Sbjct: 386 ASTFNGLFGSIAK 398



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 137/296 (46%), Gaps = 5/296 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           + ++I+ L R +   E Q     LK   +  P  I++ N++  + RA  +  A ++F EM
Sbjct: 215 FSILISILCRKRRATEAQSFFDSLK--DKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEM 272

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
                   V  +  +++    CG++ R  ++F ++++    P++ ++N L+   V + R 
Sbjct: 273 KVAGCMPNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRT 332

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E   +V+++M +    P  VT+  LI   C +  +DEALK+   +++     P+   F  
Sbjct: 333 EKVLQVYNQMKRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVK-KGCSPNASTFNG 391

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L   +  + +++ A  +  +M   K + +   Y+ L+         +    + KEM E  
Sbjct: 392 LFGSIAKLRDVNGAHRLYAKMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDD 451

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC-KANPISYNVILGGLCKDGK 343
            +PN  TY  LI+ +C    +  A+    EM ++ C K +   Y  +L  L K G+
Sbjct: 452 VEPNVNTYCVLIAMYCGMGHWNNAYKFFREMVEEKCLKPSLPVYEKVLQQLRKAGQ 507



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 87/189 (46%), Gaps = 2/189 (1%)

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YN +I      R  +  W+V D M  R ++ ++ TF  LI          EA+    + M
Sbjct: 145 YNEMIDLAGKVRNFDLGWQVIDLMKARNVEISIETFSILIRRYVRAGLASEAVH-AFNRM 203

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
             YN KPD   F+ LI  LC     + A    + + +DK E D  +Y++L+    +AG  
Sbjct: 204 EDYNCKPDKIAFSILISILCRKRRATEAQSFFDSL-KDKFEPDVIVYTNLVRGWCRAGNI 262

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            E   +  EMK  GC PN  TY  +I   C+      A  +  EM D GC+ N I++N +
Sbjct: 263 PEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNL 322

Query: 335 LGGLCKDGK 343
           L    K G+
Sbjct: 323 LRVHVKAGR 331



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 2/189 (1%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +++ILI   V +    +A   F+ M     +P  + F  LI  LC + R  EA    + +
Sbjct: 179 TFSILIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQSFFDSL 238

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
              +  +PD  V+ +L++G C  G +  A  V  EM       +   Y+ +I AL + G+
Sbjct: 239 KDKF--EPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQ 296

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
                 +  EM + GC+PNS+T+N L+    K    E    + ++M   GC  + ++YN 
Sbjct: 297 ITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNF 356

Query: 334 ILGGLCKDG 342
           ++   CKDG
Sbjct: 357 LIESHCKDG 365



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 138/356 (38%), Gaps = 44/356 (12%)

Query: 21  ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
           AL  F      P  T  HP +P       Y+ +I   G+ + FD   Q++  +K     +
Sbjct: 125 ALSFFNWATSRPGFTH-HP-EP-------YNEMIDLAGKVRNFDLGWQVIDLMKARNVEI 175

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
             E  F  +I  Y RA L   A+  F+ M  +N +     F+ L++      +    +  
Sbjct: 176 SIET-FSILIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQSF 234

Query: 141 FQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL- 199
           F  ++    PD   Y  L+ G   +  + +A +VF EM      P + T+  +I  LC  
Sbjct: 235 FDSLKDKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRC 294

Query: 200 ---------------------------ELRVDEALKLKEDIMRVYN------VKPDGQVF 226
                                       LRV       E +++VYN        PD   +
Sbjct: 295 GQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTY 354

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
             LI+  C  G L  AL V   MV+     +A  ++ L  ++ K    N    +  +MKE
Sbjct: 355 NFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMKE 414

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             CK N+VTYN L+  F   +  +    +  EM +   + N  +Y V++   C  G
Sbjct: 415 LKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYCVLIAMYCGMG 470



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 112/245 (45%), Gaps = 4/245 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y ++I  L R         +  ++  D    P  I F N++  + +A   E+ LQ+
Sbjct: 280 NVYTYTIVIDALCRCGQITRAHDVFAEML-DVGCEPNSITFNNLLRVHVKAGRTEKVLQV 338

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVV 164
           +++M           +N L+      G LD  +K L  +++K  SP+A ++N L      
Sbjct: 339 YNQMKRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAK 398

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            R +  A +++ +M + + +   VT+  L+         D  LKLK++ M   +V+P+  
Sbjct: 399 LRDVNGAHRLYAKMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKE-MDEDDVEPNVN 457

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDK-IEMDAGIYSSLISALFKAGRKNEFPAILKE 283
            +  LI   C +G  + A     EMV +K ++    +Y  ++  L KAG+  +   ++  
Sbjct: 458 TYCVLIAMYCGMGHWNNAYKFFREMVEEKCLKPSLPVYEKVLQQLRKAGQLKKHEELVAV 517

Query: 284 MKERG 288
           M +RG
Sbjct: 518 MVDRG 522


>gi|15231886|ref|NP_188076.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274210|sp|Q9LUD6.1|PP230_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g14580, mitochondrial; Flags: Precursor
 gi|9294380|dbj|BAB02390.1| unnamed protein product [Arabidopsis thaliana]
 gi|119935972|gb|ABM06049.1| At3g14580 [Arabidopsis thaliana]
 gi|332642020|gb|AEE75541.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 405

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 139/276 (50%), Gaps = 3/276 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR-ARLLERALQMFDE 108
           Y L+I K G+AKM+DE+++++  +K + R    E  F N++  YG  A  + RA+++   
Sbjct: 98  YALMINKFGQAKMYDEIEEVMRTIKLEKRCRFSEEFFYNLMRIYGNLAGRINRAIEILFG 157

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRR 167
           M  F    + K FN +LN  ++    D + ++F    K  V  DAC  NILI G   S  
Sbjct: 158 MPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACCLNILIKGLCESGN 217

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           LE A ++ DE  +++ +P ++TF  LI G C + + +EA KL E  M    ++PD   F 
Sbjct: 218 LEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLER-MEKERIEPDTITFN 276

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            LI GL   G +   + + E M     E + G Y  ++  L    R  E   ++ +M   
Sbjct: 277 ILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLEAKEMMSQMISW 336

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           G +P+ ++Y  ++ G C+ +       +L +M + G
Sbjct: 337 GMRPSFLSYKKMVLGLCETKSVVEMDWVLRQMVNHG 372



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%)

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           +E+DA   + LI  L ++G       +L E  ++  +PN +T++ LI GFC +  FE AF
Sbjct: 198 VEIDACCLNILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAF 257

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +L+ M  +  + + I++N+++ GL K G+
Sbjct: 258 KLLERMEKERIEPDTITFNILISGLRKKGR 287



 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 42/83 (50%)

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
           ++ +++ L  A   +E   I     + G + ++   N LI G C+  + EAA  +LDE  
Sbjct: 170 FNFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACCLNILIKGLCESGNLEAALQLLDEFP 229

Query: 321 DKGCKANPISYNVILGGLCKDGK 343
            +  + N ++++ ++ G C  GK
Sbjct: 230 QQKSRPNVMTFSPLIRGFCNKGK 252


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 126/263 (47%), Gaps = 1/263 (0%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMK 138
           +P  + F  ++      R  E  +    +M  F +   +  F  L++    C +L   + 
Sbjct: 62  LPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILIHCFCRCSRLSLALS 121

Query: 139 ELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            L ++M+    P   ++  L+HG  +  R+ DA+ +   MVK   +P +V + TLI  LC
Sbjct: 122 ILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLIDCLC 181

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
               V+ AL+L  ++ +   +  D   + +L+ GLC  GE   A  +  +M + +I  D 
Sbjct: 182 KNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDV 241

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             +++LI A  K G  +E   + K+M +    PN+VTYN+LI+G C       A    D 
Sbjct: 242 FTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDL 301

Query: 319 MGDKGCKANPISYNVILGGLCKD 341
           M  KGC  N ++YN ++ G CK 
Sbjct: 302 MASKGCFPNVVTYNTLINGFCKS 324



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 132/264 (50%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +   +++  + +    + A+ + D M+   ++  V  +NT++N       L+   E+
Sbjct: 683 PSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEI 742

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F  MEK  +  DA +YN LI G   S R  DA ++  +MVKR++ P ++ F  LI     
Sbjct: 743 FYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVK 802

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E  + EA  L ++++R  +V P+   + SLI G C  G L  A  + + MV      D  
Sbjct: 803 EGNLLEAKNLYKEMIR-RSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVV 861

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI+   K+ R  +   +  EM  +G   ++ TYN LI G+C+      A  + + M
Sbjct: 862 TYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRM 921

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
            D G   + ++YN++L  LC +GK
Sbjct: 922 VDCGVPPDIVTYNILLDCLCNNGK 945



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 142/299 (47%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ +  ++T + +   FD +  + H+++ +  I      F  +I  + R      AL +
Sbjct: 614 SIVDFTRVLTAIAKMNKFDIVIYLFHKME-NLGISHDLYSFTILIHCFCRCSRFSLALAL 672

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
             +M     Q ++    +LLN      +      L   M E  + P+   YN +I+G   
Sbjct: 673 LGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCK 732

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +R L +A ++F  M K+ +    VT+ TLI GLC   R  +A +L  D+++   + P+  
Sbjct: 733 NRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVK-RKIDPNVI 791

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI      G L  A  + +EM+R  +  +   Y+SLI+     GR  +   +   M
Sbjct: 792 FFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLM 851

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +GC P+ VTYN LI+GFCK +  E    +  EM  +G   +  +YN ++ G C+ GK
Sbjct: 852 VSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGK 910



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 150/298 (50%), Gaps = 3/298 (1%)

Query: 46   NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            N++ Y+ +I  L + +  +   +I + ++    IV   + +  +I     +     A ++
Sbjct: 719  NVVIYNTVINGLCKNRDLNNALEIFYGMEKKG-IVADAVTYNTLISGLCNSGRWTDAARL 777

Query: 106  FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
              +M    +   V FF  L++  +  G L   K L+ +++ + V P+  +YN LI+G  +
Sbjct: 778  LRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCI 837

Query: 165  SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              RL DA  +FD MV +   P +VT+ TLI G C   RV++ +KL  + M    +  D  
Sbjct: 838  QGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCE-MTHQGLVGDAF 896

Query: 225  VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
             + +LI G C  G+L++A  V   MV   +  D   Y+ L+  L   G+  +   +++++
Sbjct: 897  TYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDL 956

Query: 285  KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            ++     + +TYN +I G C+ +  + A+ +   +  KG K + I+Y  ++ GLC++G
Sbjct: 957  QKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNG 1014



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 129/268 (48%), Gaps = 2/268 (0%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD- 135
           +R +P  + F  V+    +    +  + +F +M +  +   +  F  L++    C +   
Sbjct: 609 SRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCSRFSL 668

Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
            +  L ++M+    P   +   L++G     R ++A  + D M +  L+P +V + T+I 
Sbjct: 669 ALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVIN 728

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           GLC    ++ AL++    M    +  D   + +LI GLC  G  + A  +  +MV+ KI+
Sbjct: 729 GLCKNRDLNNALEIFYG-MEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKID 787

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            +   +++LI    K G   E   + KEM  R   PN +TYN+LI+GFC +     A  +
Sbjct: 788 PNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHM 847

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
            D M  KGC  + ++YN ++ G CK  +
Sbjct: 848 FDLMVSKGCFPDVVTYNTLITGFCKSKR 875



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 129/264 (48%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKE 139
           P  +I+  VI    + R L  AL++F  M    +      +NTL++     G+  D  + 
Sbjct: 718 PNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARL 777

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L  ++++ + P+   +  LI   V    L +A  ++ EM++R + P ++T+ +LI G C+
Sbjct: 778 LRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCI 837

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           + R+ +A K   D+M      PD   + +LI G C    +   + +  EM    +  DA 
Sbjct: 838 QGRLGDA-KHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAF 896

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI    +AG+ N    +   M + G  P+ VTYN L+   C     E A  +++++
Sbjct: 897 TYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDL 956

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
                  + I+YN+I+ G+C++ K
Sbjct: 957 QKNQMDVDIITYNIIIQGMCRNDK 980



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 144/298 (48%), Gaps = 2/298 (0%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ +I  L +    +   ++L++++   R+    + +  ++     +    +A ++
Sbjct: 169 NVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARI 228

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             +M+   +   V  F  L++  +  G LD  +EL+ Q+++  + P+  +YN LI+G  +
Sbjct: 229 LRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCM 288

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             RL  A K FD M  +   P +VT+ TLI G C   RV++ +KL + + R   +  D  
Sbjct: 289 HGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYR-EGLVGDTF 347

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G C VG+L +A  +   MV   +  D   +  L+  L   G          +M
Sbjct: 348 TYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDM 407

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +        V YN +I G CK +  E A+ +   +  +G K +  +Y +++ GLCK+G
Sbjct: 408 RSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNG 465



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 126/266 (47%), Gaps = 5/266 (1%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F +++ GF  R R+ + A  +   M     +  V  +NTL++     G ++   E
Sbjct: 133 PSIVTFGSLLHGFCLRNRIHD-AFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALE 191

Query: 140 LFQIMEK--YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           L   MEK   ++ D  +YN L+ G   S     A ++  +M KRR+ P + TF  LI   
Sbjct: 192 LLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAF 251

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
             +  +DEA +L + +++  ++ P+   + SLI GLC  G L  A    + M       +
Sbjct: 252 VKQGNLDEAQELYKQMLQS-SIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPN 310

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y++LI+   K+ R  +   + + M   G   ++ TYN LI G+C+      A  I  
Sbjct: 311 VVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFS 370

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
            M   G   + I++ ++L GLC +G+
Sbjct: 371 WMVSCGVTPDIITHCILLHGLCVNGE 396



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 136/287 (47%), Gaps = 11/287 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y+ ++T L  +  + +  +IL  +    RI P    F  +I  + +   L+ A ++
Sbjct: 205 DLVTYNTLLTGLCYSGEWRQAARILRDMT-KRRINPDVFTFTALIDAFVKQGNLDEAQEL 263

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           + +M   ++      +N+L+N     G+L   K+ F +M  K   P+  +YN LI+G   
Sbjct: 264 YKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCK 323

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI---MRVYNVKP 221
           SRR+ED  K+F  M +  L     T+ TLI+G C   +V + L++ +DI   M    V P
Sbjct: 324 SRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYC---QVGK-LRVAKDIFSWMVSCGVTP 379

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D      L+ GLC  GE+  A+    +M   +  +    Y+ +I  L KA +  E   + 
Sbjct: 380 DIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELF 439

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG--CKA 326
             +   G KP++ TY  +I G CK      A  +   M + G  C+A
Sbjct: 440 CRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDGIICQA 486



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 115/244 (47%), Gaps = 3/244 (1%)

Query: 102 ALQMFDEMSS-FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
           AL++ +EM     +   +  +NTLL      G+  +   + + M K  ++PD  ++  LI
Sbjct: 189 ALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALI 248

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
              V    L++A +++ +M++  + P  VT+ +LI GLC+  R+  A K   D+M     
Sbjct: 249 DAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKK-TFDLMASKGC 307

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   + +LI G C    +   + + + M R+ +  D   Y++LI    + G+      
Sbjct: 308 FPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKD 367

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           I   M   G  P+ +T+  L+ G C   +  +A    ++M         ++YN+++ GLC
Sbjct: 368 IFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLC 427

Query: 340 KDGK 343
           K  K
Sbjct: 428 KADK 431



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 2/184 (1%)

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G + S R EDA  +F EMV+ +  P++V F  L+  +   LR  E +      M ++ + 
Sbjct: 39  GFLHSIRFEDALDLFLEMVQSQPLPSVVDFTRLLTAIA-NLRRYETVIYFSQQMELFGIS 97

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
            D   F  LI   C    LSLAL +  +M++   +     + SL+       R ++  ++
Sbjct: 98  HDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSL 157

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG-CKANPISYNVILGGLC 339
           +  M + G +PN V YN LI   CK  D   A  +L+EM  KG   A+ ++YN +L GLC
Sbjct: 158 VASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLC 217

Query: 340 KDGK 343
             G+
Sbjct: 218 YSGE 221



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 126/284 (44%), Gaps = 38/284 (13%)

Query: 50   YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
            Y+ +I+ L  +  + +  ++L  +    +I P  I F  +I  + +   L  A  ++ EM
Sbjct: 758  YNTLISGLCNSGRWTDAARLLRDMV-KRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEM 816

Query: 110  SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
               +V   +  +N+L+N     G+L   K +F +M  K   PD  +YN LI G   S+R+
Sbjct: 817  IRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRV 876

Query: 169  EDAWKVFDEMVKRRLQPTLVTFGTLIYG-------------------------------- 196
            ED  K+F EM  + L     T+ TLI+G                                
Sbjct: 877  EDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNIL 936

Query: 197  ---LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
               LC   ++++AL + ED+ +   +  D   +  +I+G+C   ++  A  +   + R  
Sbjct: 937  LDCLCNNGKIEKALVMVEDLQK-NQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKG 995

Query: 254  IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
            +++DA  Y ++IS L + G + E   +   MKE G  P+   Y+
Sbjct: 996  VKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPSERIYD 1039



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 88/172 (51%), Gaps = 6/172 (3%)

Query: 46   NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            +++ Y+ +IT   ++K  ++  ++  ++ H   +V     +  +I  Y +A  L  A ++
Sbjct: 859  DVVTYNTLITGFCKSKRVEDGMKLFCEMTHQG-LVGDAFTYNTLIHGYCQAGKLNVAQKV 917

Query: 106  FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVV 164
            F+ M    V   +  +N LL+     GK+++   + + ++K  +  D  +YNI+I G   
Sbjct: 918  FNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCR 977

Query: 165  SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL----KED 212
            + ++++AW +F  + ++ ++   + + T+I GLC      EA KL    KED
Sbjct: 978  NDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKED 1029


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 153/301 (50%), Gaps = 3/301 (0%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           +K  + NL  Y+ II  L ++   D+ +++L ++ +   IVP  +++  +I  + +   +
Sbjct: 38  MKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQG-IVPDTVVYTTLIDGFCKLGNI 96

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           + A ++FDEM    +      +  ++     CGK+    ++F  M  + V PD  +Y  L
Sbjct: 97  QAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTL 156

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   S  +E A+ + ++MV+  L P +VT+  L  GLC   +VD A +L  + M    
Sbjct: 157 IDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHE-MCGKG 215

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           ++ +   + SL+ GLC  G +  A+ + EEM    +  D   +++L+ A  K G   +  
Sbjct: 216 LQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAH 275

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +L+EM +RG +P  +T+N L++GFC     E    +L  M +KG   N  +YN ++   
Sbjct: 276 ELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQY 335

Query: 339 C 339
           C
Sbjct: 336 C 336



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 109/195 (55%), Gaps = 1/195 (0%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           +PD  SY+ +I+G  +   L+   K+  EM  + L+P L T+ ++I  LC   +VD+A +
Sbjct: 7   APDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAER 66

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           +  +++    + PD  V+ +LI G C +G +  A  + +EM + +I  D   Y+++I  L
Sbjct: 67  VLREMIN-QGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGL 125

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            + G+  E   +  +M  RG +P+ VTY  LI G+CK  + E AF++ ++M   G   N 
Sbjct: 126 CRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNV 185

Query: 329 ISYNVILGGLCKDGK 343
           ++Y  +  GLCK G+
Sbjct: 186 VTYTALADGLCKLGQ 200



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 134/265 (50%), Gaps = 2/265 (0%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
            P  + +  VI  Y     L++ L++  EM    ++  +  +N+++      GK+D  + 
Sbjct: 7   APDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAER 66

Query: 140 LF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           +  +++ + + PD   Y  LI G      ++ A+K+FDEM K+R+ P  + +  +I GLC
Sbjct: 67  VLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLC 126

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              ++ EA K+    M    V+PD   + +LI G C  GE+  A  +  +MV+  +  + 
Sbjct: 127 RCGKMMEADKVFNK-MFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNV 185

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y++L   L K G+ +    +L EM  +G + N  TYN+L++G CK  +   A  +++E
Sbjct: 186 VTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEE 245

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M   G   + I++  ++   CK G+
Sbjct: 246 MEVAGMYPDTITFTTLMDAYCKTGE 270



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 125/267 (46%), Gaps = 2/267 (0%)

Query: 70  LHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL 129
           LH     + + P  + +  +     +   ++ A ++  EM    +Q+ +  +N+L+N   
Sbjct: 172 LHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLC 231

Query: 130 TCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
             G + +  +L + ME   + PD  ++  L+     +  +  A ++  EM+ R LQPT++
Sbjct: 232 KSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVI 291

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           TF  L+ G C+   +++  +L   ++    + P+   + SL+K  C    +     + + 
Sbjct: 292 TFNVLMNGFCMSGMLEDGERLLAWMLE-KGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKG 350

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M    +  D+  Y+ LI    KA    E   + KEM E+G    + +YN++I GF K++ 
Sbjct: 351 MCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKK 410

Query: 309 FEAAFTILDEMGDKGCKANPISYNVIL 335
              A  + +EM  +G  A+   YN+ +
Sbjct: 411 ISEARELFEEMRREGMAADAEIYNLFV 437



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 127/274 (46%), Gaps = 3/274 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +   L +    D   ++LH++     +      + +++    ++  + +A+++
Sbjct: 184 NVVTYTALADGLCKLGQVDTANELLHEM-CGKGLQLNICTYNSLVNGLCKSGNIRQAVKL 242

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            +EM    +      F TL++     G++ +  EL  +++++ + P   ++N+L++G  +
Sbjct: 243 MEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCM 302

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S  LED  ++   M+++ + P   T+ +L+   C+   +    ++ +  M    V PD  
Sbjct: 303 SGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKG-MCARGVMPDSN 361

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LIKG C    +  A  + +EM      + A  Y+S+I   FK  + +E   + +EM
Sbjct: 362 TYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEM 421

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
           +  G   ++  YN  +     E + E A  + DE
Sbjct: 422 RREGMAADAEIYNLFVDISYGEGNMETALELCDE 455



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%)

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           MK RG  P+ V+Y+ +I+G+C   + +    ++ EM  KG K N  +YN I+  LCK GK
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 155/299 (51%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y  ++  L +    D    +L +++   +I    +I+  +I    + + ++ AL +
Sbjct: 222 DLVTYGTVVNGLCKRGDIDLALSLLKKMEKG-KIEADVVIYNTIIDGLCKYKHMDDALNL 280

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           F EM +  ++  V  +++L++     G+  D  + L  ++E+ ++P+  +++ LI   V 
Sbjct: 281 FTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 340

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L +A K++DEM+KR + P + T+ +LI G C+  R+DEA  + E +M   +  P+  
Sbjct: 341 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE-LMISKDCFPNVV 399

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +++LIKG C    +   + +  EM +  +  +   Y++LI   F+A   +    + K+M
Sbjct: 400 TYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 459

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  PN +TYN L+ G CK      A  + + +     + +  +YN+++ G+CK GK
Sbjct: 460 VSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK 518



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 134/264 (50%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  V+    +   ++ AL +  +M    ++  V  +NT+++       +D    L
Sbjct: 221 PDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNL 280

Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F  M+ K + PD  +Y+ LI       R  DA ++  +M++R++ P +VTF  LI     
Sbjct: 281 FTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 340

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E ++ EA KL +++++  ++ PD   ++SLI G C    L  A  + E M+      +  
Sbjct: 341 EGKLVEAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVV 399

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YS+LI    KA R  E   + +EM +RG   N+VTY  LI GF +  D + A  +  +M
Sbjct: 400 TYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 459

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
              G   N ++YN++L GLCK+GK
Sbjct: 460 VSVGVHPNILTYNILLDGLCKNGK 483



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 156/303 (51%), Gaps = 3/303 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  R ++  Y  +I+ L     + +  ++L  +  + +I P  + F  +I  + +   L 
Sbjct: 287 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMI-ERKINPNVVTFSALIDAFVKEGKLV 345

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            A +++DEM   ++   +  +++L+N      +LD  K +F++M  K   P+  +Y+ LI
Sbjct: 346 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLI 405

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G   ++R+E+  ++F EM +R L    VT+ TLI+G       D A  + + ++ V  V
Sbjct: 406 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSV-GV 464

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   +  L+ GLC  G+L+ A+ V E + R  +E D   Y+ +I  + KAG+  +   
Sbjct: 465 HPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWE 524

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +   +  +G  PN + YN +ISGFC++   E A ++L +M + G   N  +YN ++    
Sbjct: 525 LFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARL 584

Query: 340 KDG 342
           +DG
Sbjct: 585 RDG 587



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 128/266 (48%), Gaps = 4/266 (1%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P    F  +I G +   +  E A+ + D+M     Q  +  + T++N     G +D    
Sbjct: 186 PDTFTFTTLIHGLFLHNKASE-AVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALS 244

Query: 140 LFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L + MEK  +  D   YN +I G    + ++DA  +F EM  + ++P + T+ +LI  LC
Sbjct: 245 LLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLC 304

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              R  +A +L  D++    + P+   F++LI      G+L  A  + +EM++  I+ D 
Sbjct: 305 NYGRWSDASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 363

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             YSSLI+      R +E   + + M  + C PN VTY+ LI GFCK +  E    +  E
Sbjct: 364 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFRE 423

Query: 319 MGDKGCKANPISYNVILGGLCKDGKC 344
           M  +G   N ++Y  ++ G  +   C
Sbjct: 424 MSQRGLVGNTVTYTTLIHGFFQARDC 449



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 139/268 (51%), Gaps = 2/268 (0%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD- 135
           +R  P  + F  ++    +    E  + + ++M +  +   +  ++  +N      +L  
Sbjct: 77  SRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSL 136

Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
            +  L ++M+    PD  + + L++G   S+R+ DA  + D+MV+   +P   TF TLI+
Sbjct: 137 ALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIH 196

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           GL L  +  EA+ L + +++    +PD   + +++ GLC  G++ LAL + ++M + KIE
Sbjct: 197 GLFLHNKASEAVALVDQMVQ-RGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE 255

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D  IY+++I  L K    ++   +  EM  +G +P+  TY++LIS  C    +  A  +
Sbjct: 256 ADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 315

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
           L +M ++    N ++++ ++    K+GK
Sbjct: 316 LSDMIERKINPNVVTFSALIDAFVKEGK 343



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 2/209 (0%)

Query: 133 KLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           K+D   +LF  M K    P    +N L+       + E    + ++M    +   L T+ 
Sbjct: 63  KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
             I   C   ++  AL +   +M++   +PD    +SL+ G C    +S A+ + ++MV 
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKL-GYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE 181

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
              + D   +++LI  LF   + +E  A++ +M +RGC+P+ VTY  +++G CK  D + 
Sbjct: 182 MGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDL 241

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCK 340
           A ++L +M     +A+ + YN I+ GLCK
Sbjct: 242 ALSLLKKMEKGKIEADVVIYNTIIDGLCK 270


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 156/305 (51%), Gaps = 6/305 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP   NL+ ++ ++  + +A   ++ +++  ++  +  + P  + +  ++G Y +A   
Sbjct: 216 LKP---NLVTFNSMVNGMCKAGKMEDARKVFDEMMREG-LAPDGVSYNTLVGGYCKAGCS 271

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNIL 158
             AL +F EM+   +   V  F +L++     G L+    L  Q+ E+ +  +  ++  L
Sbjct: 272 HEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTAL 331

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G      L+DA      M + R++P++V +  LI G C+  R+DEA +L  + M    
Sbjct: 332 IDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHE-MEAKG 390

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           +KPD   ++++I   C   +   A  + ++M+   +  DA  YSSLI  L +  R ++  
Sbjct: 391 LKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAH 450

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            + K M + G +P+  TY +LI G CKE + E A ++ D+M   G   + ++Y+V++ GL
Sbjct: 451 VLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGL 510

Query: 339 CKDGK 343
            K  +
Sbjct: 511 SKSAR 515



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 156/299 (52%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y+++I  L       E   IL  ++      P  + +  ++  + RA  ++ A ++
Sbjct: 149 NVYTYNILIRALCGRGHRKEALSILRDMR-GAGCGPNVVTYNTLVAAFFRAGEVDGAERL 207

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
              M    ++  +  FN+++N     GK++  +++F ++M + ++PD  SYN L+ G   
Sbjct: 208 VGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCK 267

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +    +A  VF EM ++ + P +VTF +LI+ +C    ++ A+ L    MR   ++ +  
Sbjct: 268 AGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQ-MRERGLQMNEV 326

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G L  AL     M + +I+     Y++LI+     GR +E   +L EM
Sbjct: 327 TFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEM 386

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + +G KP+ VTY+ +IS +CK  D  +AF +  +M +KG   + I+Y+ ++  LC++ +
Sbjct: 387 EAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKR 445



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 130/251 (51%), Gaps = 12/251 (4%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----VSPDACS 154
           L  A + FD M S  V   V  +N L+  +  CG+  R KE   I+         P+  +
Sbjct: 131 LTSARRFFDSMLSDGVAPNVYTYNILI--RALCGRGHR-KEALSILRDMRGAGCGPNVVT 187

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YN L+     +  ++ A ++   M+   L+P LVTF +++ G+C   ++++A K+ +++M
Sbjct: 188 YNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMM 247

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           R   + PDG  + +L+ G C  G    AL V  EM +  I  D   ++SLI  + KAG  
Sbjct: 248 R-EGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNL 306

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP--ISYN 332
                ++++M+ERG + N VT+ ALI GFCK+   + A  +L   G + C+  P  + YN
Sbjct: 307 EWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDA--LLAVRGMRQCRIKPSVVCYN 364

Query: 333 VILGGLCKDGK 343
            ++ G C  G+
Sbjct: 365 ALINGYCMVGR 375



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 133/278 (47%), Gaps = 17/278 (6%)

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
            E+ F  +I  + +   L+ AL     M    ++ +V  +N L+N     G++D  +EL 
Sbjct: 324 NEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELL 383

Query: 142 QIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
             ME K + PD  +Y+ +I     +     A+++  +M+++ + P  +T+ +LI  LC E
Sbjct: 384 HEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEE 443

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            R+ +A  L ++++++  ++PD   + SLI G C  G +  AL + ++MV+  +  D   
Sbjct: 444 KRLSDAHVLFKNMIKL-GLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVT 502

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN---------------ALISGFCK 305
           YS LI+ L K+ R  E   +L ++      P +  Y+               AL+ GFC 
Sbjct: 503 YSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCM 562

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +     A  +   M D+    +   Y+V++ G C+ G 
Sbjct: 563 KGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGN 600



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 136/335 (40%), Gaps = 74/335 (22%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL-TCGKLDR 136
           RI P  + +  +I  Y     ++ A ++  EM +  ++  V  ++T+++     C     
Sbjct: 355 RIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSA 414

Query: 137 MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
            +   Q++EK V PDA +Y+ LI      +RL DA  +F  M+K  LQP   T+ +LI G
Sbjct: 415 FELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDG 474

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFA----------------------------- 227
            C E  V+ AL L + +++   V PD   ++                             
Sbjct: 475 HCKEGNVERALSLHDKMVKA-GVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIP 533

Query: 228 ---------------------SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266
                                +L+KG C  G ++ A  V + M+     +D  +YS LI 
Sbjct: 534 ANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIH 593

Query: 267 ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF-------------------CKEE 307
              +AG   +  +  K+M +RG  PNS +  +LI G                    C   
Sbjct: 594 GHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNCCSLA 653

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           D EA+  ++D   ++G   N  +   +L G+ KDG
Sbjct: 654 DAEASKALIDLNLNEG---NVDAVLDVLHGMAKDG 685



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 139/317 (43%), Gaps = 31/317 (9%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGR----AKMFDEMQQILHQLKHDTRIVPKEIIFCN 88
           ++ EA  LKP   +++ Y  II+   +       F+  QQ+L +      ++P  I + +
Sbjct: 384 HEMEAKGLKP---DVVTYSTIISAYCKNCDTHSAFELNQQMLEK-----GVLPDAITYSS 435

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY- 147
           +I      + L  A  +F  M    +Q     + +L++     G ++R   L   M K  
Sbjct: 436 LIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAG 495

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY------------ 195
           V PD  +Y++LI+G   S R  +A ++  ++      P    +  L++            
Sbjct: 496 VLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLA 555

Query: 196 ---GLCLELRVDEALKLKEDIM-RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
              G C++  ++EA K+ + ++ R +N+  DG V++ LI G C  G +  AL   ++M++
Sbjct: 556 LLKGFCMKGLMNEADKVYQSMLDRNWNL--DGSVYSVLIHGHCRAGNVMKALSFHKQMLQ 613

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
                ++    SLI  LF+ G   E   +++++       ++    ALI     E + +A
Sbjct: 614 RGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNCCSLADAEASKALIDLNLNEGNVDA 673

Query: 312 AFTILDEMGDKGCKANP 328
              +L  M   G   +P
Sbjct: 674 VLDVLHGMAKDGLLPSP 690


>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 418

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 128/228 (56%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++  +  G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E ++D+A +L ++++    + P+G  F +LI G C 
Sbjct: 195 NAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMID-NGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 254 NGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGR 361



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 135/282 (47%), Gaps = 42/282 (14%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ ++++ +V  FNTL+N  +  G LD 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M+   V PD  +Y++LI+G     +++DA ++FDEM+   L P  VTF TLI 
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKE----------------------------------DIMRVYNVKP 221
           G C   RVD A+++ +                                  D M +  +KP
Sbjct: 250 GHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKP 309

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +LI G C  G+L  A   ++ M+++ I +D   Y++LIS L + GR  +   +L
Sbjct: 310 DKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKML 369

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +EM   G KP   TY  +I+ FCK+ D      +L EM   G
Sbjct: 370 REMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 2/198 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           ++ A ++FDEM    +      F TL++     G++D   E++ Q++ + +SPD  +YN 
Sbjct: 222 MDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 281

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G      L+ A  + DEM  + L+P  +T+ TLI G C E  ++ A + ++ +++  
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKE- 340

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N++ D   + +LI GLC  G    A  +  EM+   ++ + G Y+ +I+   K G     
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400

Query: 278 PAILKEMKERGCKPNSVT 295
             +LKEM+  G  P+ VT
Sbjct: 401 SKLLKEMQRDGYMPSVVT 418



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE +          ++ L+ +  K G      ++   + +   +P+ V++N L+
Sbjct: 119 LVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ K  D +  F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221


>gi|413944087|gb|AFW76736.1| hypothetical protein ZEAMMB73_938811 [Zea mays]
          Length = 496

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 115/197 (58%), Gaps = 3/197 (1%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR---LQPTLVTFGTLIYGLCLELRVDEA 206
           P+ C YNIL+   V +  LE A+KV DEM +     ++P LVT+ TLI GLC   ++ EA
Sbjct: 180 PNTCVYNILVKHYVKNGELETAFKVLDEMREYTCADVKPNLVTYSTLIGGLCRGGKMKEA 239

Query: 207 LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266
            +L E+++    + PD  ++  +I G C  G++  A  +   M +++ E +   Y++LI+
Sbjct: 240 FELFEEMIEKDRIVPDQLLYNVIIDGFCRQGQVDKARAIFGFMRKNECEPNTFNYATLIN 299

Query: 267 ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326
              K        ++ +EM+  G +P++V+Y ALI   C+    +    ++ EM +KGC+A
Sbjct: 300 GHCKKADIEAARSVFEEMRNSGVEPDAVSYTALIGCLCRHGSVDEGIGLVLEMKEKGCRA 359

Query: 327 NPISYNVILGGLCKDGK 343
           + ++YN+++ GLCKDG+
Sbjct: 360 DVVTYNLVIEGLCKDGR 376



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 139/304 (45%), Gaps = 5/304 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT--RIVPKEIIFCNVIGFYGRARLLER 101
           R N   Y++++    +    +   ++L +++  T   + P  + +  +IG   R   ++ 
Sbjct: 179 RPNTCVYNILVKHYVKNGELETAFKVLDEMREYTCADVKPNLVTYSTLIGGLCRGGKMKE 238

Query: 102 ALQMFDEMSSFNVQMTVKF-FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
           A ++F+EM   +  +  +  +N +++     G++D+ + +F  M K    P+  +Y  LI
Sbjct: 239 AFELFEEMIEKDRIVPDQLLYNVIIDGFCRQGQVDKARAIFGFMRKNECEPNTFNYATLI 298

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +G      +E A  VF+EM    ++P  V++  LI  LC    VDE + L  + M+    
Sbjct: 299 NGHCKKADIEAARSVFEEMRNSGVEPDAVSYTALIGCLCRHGSVDEGIGLVLE-MKEKGC 357

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           + D   +  +I+GLC  G    A+G+ E +  + ++++   Y  L++ L   G  +    
Sbjct: 358 RADVVTYNLVIEGLCKDGRTVEAMGLLESVPLEGVKLNVASYRILMNCLCSRGEMDRAVG 417

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +L  M  RG  P+    N L+ G C       A   L  + D G    P  +  ++  +C
Sbjct: 418 LLGLMLGRGFLPHYAASNNLLIGLCDAGRIADATMALYGLADAGFMPEPRCWERLVESVC 477

Query: 340 KDGK 343
           ++ K
Sbjct: 478 RERK 481


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 155/305 (50%), Gaps = 5/305 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  N++  + +I  L +A    E  ++L  +  +  +V   I +  +I    +   ++
Sbjct: 495 KGFVPNIVTSNALIHGLCKAGNMQETLKLLRDML-ERGLVFDRITYNTLISGCCKEGKVK 553

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYNIL 158
              ++ +EM    +Q  +  FN LL+      K+D    L+   +K  YV P+  +Y ++
Sbjct: 554 EGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYV-PNVYTYGVM 612

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   + ++E+   + +E+V ++L+   V + +LI   C+   ++ A +L++D M+   
Sbjct: 613 IDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDD-MKSRG 671

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V      ++SL+ GLC +G +  A  + +EM ++ +  +   Y+++I    K G+ N+  
Sbjct: 672 VLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVN 731

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +L+EM      PN  TY  +I GFCK    + A  +L+EM +KG   + ++YN    GL
Sbjct: 732 IVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGL 791

Query: 339 CKDGK 343
           CK+GK
Sbjct: 792 CKEGK 796



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 145/303 (47%), Gaps = 41/303 (13%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD--- 135
           I+P   +F  +I  + +    + A+ +F +M    V   V  +N +++     G+LD   
Sbjct: 252 IIPDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAY 311

Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
           R KE  +++++ VSP   +Y++ I+G +   ++++A  V  EM +    P  V + TLI 
Sbjct: 312 RFKE--KMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLID 369

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C    + EALK+++D++    + P+     SLI+G C   ++  A  V EEM+   + 
Sbjct: 370 GYCKMGNISEALKIRDDMLS-KGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLP 428

Query: 256 MDAGIYS-----------------------------------SLISALFKAGRKNEFPAI 280
           ++ G +S                                   +L+S L KAG++ E   +
Sbjct: 429 INQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVEL 488

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
              +  +G  PN VT NALI G CK  + +    +L +M ++G   + I+YN ++ G CK
Sbjct: 489 WCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCK 548

Query: 341 DGK 343
           +GK
Sbjct: 549 EGK 551



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 135/287 (47%), Gaps = 17/287 (5%)

Query: 69  ILHQLKHDTRIVPKEIIFCNVI-----GFYGR---ARLLERALQMFDEMSSFNVQMTVKF 120
           ++H L  +  + P  ++   +I      FY R   +R  E A  M D    F   + VK 
Sbjct: 126 LIHLLVGNDLLSPARLLLIRLIDGKVPAFYARNFESRHFEIAQIMADFNLVFEPVIGVKI 185

Query: 121 FNTLLNPKLTCGK---LDRMKELFQIMEK---YVSPDACSYNILIHGCVVSRRLEDAWKV 174
            + L++   T  K        ++F ++ K   + S   C++  L+   V +  L+ +++V
Sbjct: 186 ADLLVHVYSTQFKHLGFGFAADVFSLLAKKGLFPSLKTCTF--LLSSLVKANELKKSYEV 243

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
           +D +    + P +  F T+I   C   R D+A+ L    M    V P+   + ++I GLC
Sbjct: 244 YDFICLGGIIPDVHLFSTMINAFCKGHREDDAIGLFSK-MEKLGVAPNVVTYNNIIHGLC 302

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
             G L  A   KE+MV++K+      YS  I+ L K  + +E   +LKEM E G  PN V
Sbjct: 303 KSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEV 362

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            YN LI G+CK  +   A  I D+M  KG   N ++ N ++ G CK 
Sbjct: 363 VYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKS 409



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 121/242 (50%), Gaps = 2/242 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           AL    EM   N++       TL++     GK     EL+ +++ K   P+  + N LIH
Sbjct: 450 ALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIH 509

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G   +  +++  K+  +M++R L    +T+ TLI G C E +V E  +LKE++++   ++
Sbjct: 510 GLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVK-KGIQ 568

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   F  L+ GLC   ++  A  +  E  ++    +   Y  +I    KA +  E   +
Sbjct: 569 PDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENL 628

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L E+  +  + NSV YN+LI  +C   +  AAF + D+M  +G   +  +Y+ ++ GLC 
Sbjct: 629 LNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCN 688

Query: 341 DG 342
            G
Sbjct: 689 IG 690



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 5/174 (2%)

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE--DIMRVYNVKPDGQVFAS 228
           A  VF  + K+ L P+L T   L+  L   ++ +E  K  E  D + +  + PD  +F++
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSL---VKANELKKSYEVYDFICLGGIIPDVHLFST 261

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I   C       A+G+  +M +  +  +   Y+++I  L K+GR +E     ++M +  
Sbjct: 262 MINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEK 321

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             P+ +TY+  I+G  K E  + A  +L EM + G   N + YN ++ G CK G
Sbjct: 322 VSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMG 375



 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 40/80 (50%)

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           L+S+L KA    +   +   +   G  P+   ++ +I+ FCK    + A  +  +M   G
Sbjct: 227 LLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDDAIGLFSKMEKLG 286

Query: 324 CKANPISYNVILGGLCKDGK 343
              N ++YN I+ GLCK G+
Sbjct: 287 VAPNVVTYNNIIHGLCKSGR 306


>gi|218184750|gb|EEC67177.1| hypothetical protein OsI_34045 [Oryza sativa Indica Group]
          Length = 755

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 158/308 (51%), Gaps = 10/308 (3%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +  + N++ Y +++  L +  MF E+  +L ++ ++  +    I +  +I  Y +   +E
Sbjct: 332 QGLQLNIVTYSVLLNALFKKGMFCEIDNLLGEI-YNIGLDMDVIAYSILIHGYCKLGEIE 390

Query: 101 RALQMFDEMSSFNVQM--TVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL 158
           +ALQ+ + M S    M  ++  F+ LL        ++    L  +  KY   D   YN++
Sbjct: 391 KALQVCNAMCSSQRVMPTSLNHFSILLGLCKKGLLVEARWYLENVARKYQPTDVVFYNVV 450

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G      + +A +++D++    + PT+VT  +L+YG C   ++ + L+L E   R   
Sbjct: 451 IDGYAKLGDIVNAVRLYDQITVAGMHPTIVTCNSLLYGYC---KIGD-LQLAESYFRAIQ 506

Query: 219 VK---PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
           +    P    + +L+  L   GE++  L + +EMV  +I+ +A  YS ++  L K  R +
Sbjct: 507 LSGLLPTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVVVKGLCKQLRFD 566

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E   +LK+M  +G   + +TYN LI GFC+ E+ + AF I D M  +G    P++YN+++
Sbjct: 567 EAINVLKDMDSKGINADPITYNTLIQGFCESENVQMAFHIHDIMLCRGLVPTPVTYNLLI 626

Query: 336 GGLCKDGK 343
             LC  GK
Sbjct: 627 NVLCLKGK 634



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 128/229 (55%), Gaps = 10/229 (4%)

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP-KLTCGKLDRMKELFQIMEK-YVSP 150
           Y RA+++  AL +  +MSS N+Q++V  +++LL+  ++T   L    ELF+ ME   VSP
Sbjct: 179 YARAQMVHDALYVLSKMSSLNMQISVFTYDSLLHGLRMTNVAL----ELFEEMESCGVSP 234

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
              S++I+I+G      +E+A  +F+ + K  ++  +VT+ +LI G  L     E  K+ 
Sbjct: 235 SEYSHSIIINGLC---SMEEALDLFERVTKEGMELEIVTYNSLINGYRLLGLTKEIPKII 291

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
           + +MR   V+PD   +  LI G C  G++   + V+++++   ++++   YS L++ALFK
Sbjct: 292 Q-MMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVLDQGLQLNIVTYSVLLNALFK 350

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            G   E   +L E+   G   + + Y+ LI G+CK  + E A  + + M
Sbjct: 351 KGMFCEIDNLLGEIYNIGLDMDVIAYSILIHGYCKLGEIEKALQVCNAM 399



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 105/192 (54%), Gaps = 7/192 (3%)

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           + C ++ L +    ++ + DA  V  +M    +Q ++ T+ +L++GL +    + AL+L 
Sbjct: 168 NGCVWDALANSYARAQMVHDALYVLSKMSSLNMQISVFTYDSLLHGLRM---TNVALELF 224

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
           E+ M    V P     + +I GLC++ E   AL + E + ++ +E++   Y+SLI+    
Sbjct: 225 EE-MESCGVSPSEYSHSIIINGLCSMEE---ALDLFERVTKEGMELEIVTYNSLINGYRL 280

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            G   E P I++ M+ +G +P+ VTY  LI+G C+  D E    +  ++ D+G + N ++
Sbjct: 281 LGLTKEIPKIIQMMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVLDQGLQLNIVT 340

Query: 331 YNVILGGLCKDG 342
           Y+V+L  L K G
Sbjct: 341 YSVLLNALFKKG 352



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 149/375 (39%), Gaps = 89/375 (23%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           +  F Y+ L + L +T +   ++F+EM+           + P E  + + I   G   + 
Sbjct: 202 ISVFTYDSLLHGLRMTNVA-LELFEEMES--------CGVSPSE--YSHSIIINGLCSM- 249

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNIL 158
           E AL +F+ ++   +++ +  +N+L+N     G    + ++ Q+M  + V PD  +Y IL
Sbjct: 250 EEALDLFERVTKEGMELEIVTYNSLINGYRLLGLTKEIPKIIQMMRGQGVEPDLVTYTIL 309

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   S  +E+  KV  +++ + LQ  +VT+  L+  L    +     ++   +  +YN
Sbjct: 310 IAGHCESGDVEEGMKVRKDVLDQGLQLNIVTYSVLLNAL---FKKGMFCEIDNLLGEIYN 366

Query: 219 VKPDGQVFAS--LIKGLCAVGELSLALGV------------------------------- 245
           +  D  V A   LI G C +GE+  AL V                               
Sbjct: 367 IGLDMDVIAYSILIHGYCKLGEIEKALQVCNAMCSSQRVMPTSLNHFSILLGLCKKGLLV 426

Query: 246 -----KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
                 E + R     D   Y+ +I    K G       +  ++   G  P  VT N+L+
Sbjct: 427 EARWYLENVARKYQPTDVVFYNVVIDGYAKLGDIVNAVRLYDQITVAGMHPTIVTCNSLL 486

Query: 301 SGFCKEEDFEAA-----------------------------------FTILDEMGDKGCK 325
            G+CK  D + A                                    ++ DEM  K  K
Sbjct: 487 YGYCKIGDLQLAESYFRAIQLSGLLPTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIK 546

Query: 326 ANPISYNVILGGLCK 340
           AN ++Y+V++ GLCK
Sbjct: 547 ANAVTYSVVVKGLCK 561



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 127/300 (42%), Gaps = 38/300 (12%)

Query: 81  PKEIIFCNV-IGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P +++F NV I  Y +   +  A++++D+++   +  T+   N+LL      G L   + 
Sbjct: 441 PTDVVFYNVVIDGYAKLGDIVNAVRLYDQITVAGMHPTIVTCNSLLYGYCKIGDLQLAES 500

Query: 140 LFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            F+ ++   + P A +Y  L+     +  +     +FDEMV +R++   VT+  ++ GLC
Sbjct: 501 YFRAIQLSGLLPTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVVVKGLC 560

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
            +LR DEA+ + +D M    +  D   + +LI+G C    + +A  + + M+   +    
Sbjct: 561 KQLRFDEAINVLKD-MDSKGINADPITYNTLIQGFCESENVQMAFHIHDIMLCRGLVPTP 619

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI------------------ 300
             Y+ LI+ L   G+  +   +L+ ++E G K     Y  LI                  
Sbjct: 620 VTYNLLINVLCLKGKVIQAEILLESLRENGIKLRKFAYTTLIKAQCAKGMPINAVLLVGK 679

Query: 301 -----------------SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
                            +  CK +  + AF  +  M   G   +   Y V+   L K+ +
Sbjct: 680 LLDAGFEASIEDFSAAINRLCKRQFAKEAFMFVPIMLSVGIYPDTQIYCVLGRALQKNSE 739



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 8/225 (3%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           ++P  + +  ++     A  +   L +FDEM +  ++     ++ ++  K  C +L R  
Sbjct: 510 LLPTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVVV--KGLCKQL-RFD 566

Query: 139 ELFQIME----KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           E   +++    K ++ D  +YN LI G   S  ++ A+ + D M+ R L PT VT+  LI
Sbjct: 567 EAINVLKDMDSKGINADPITYNTLIQGFCESENVQMAFHIHDIMLCRGLVPTPVTYNLLI 626

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
             LCL+ +V +A  L E  +R   +K     + +LIK  CA G    A+ +  +++    
Sbjct: 627 NVLCLKGKVIQAEILLES-LRENGIKLRKFAYTTLIKAQCAKGMPINAVLLVGKLLDAGF 685

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
           E     +S+ I+ L K     E    +  M   G  P++  Y  L
Sbjct: 686 EASIEDFSAAINRLCKRQFAKEAFMFVPIMLSVGIYPDTQIYCVL 730


>gi|255660914|gb|ACU25626.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 481

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 167/321 (52%), Gaps = 15/321 (4%)

Query: 35  TEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVPKEII 85
           T  H L+ FR+    NL  +D      II  LGRA   +  + IL  +     +   E +
Sbjct: 24  TSEHALQFFRWVERSNLFEHDRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDM 82

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIM 144
           +  +I  YG+A +++ ++++F +M    V+ T+K ++ L    +  G+    K  F +++
Sbjct: 83  WVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKML 142

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
            + + P   ++N++I G  +S +++ A + F++M  R + P +VT+ T+I G     ++D
Sbjct: 143 SEGIEPTRHTFNVMIWGFFLSGKMDTAMRFFEDMKSREISPDVVTYNTMINGCYRVKKMD 202

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  YS+L
Sbjct: 203 EAEKYFVE-MKGKNIEPTVVTYTTLIKGYVSVDQVHDALRLVEEMKGYGIKPNAITYSTL 261

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           +  L  AG+ +E  +ILKEM ++   P  NS+ +  LIS  C+  + +AA  +L  M   
Sbjct: 262 LPGLCNAGKMSEAQSILKEMVDKYIAPKDNSI-FMRLISSQCEAGNLDAAADVLKAMIRL 320

Query: 323 GCKANPISYNVILGGLCKDGK 343
                   Y V++   CK G+
Sbjct: 321 SVPTEAGHYGVLIENFCKAGQ 341



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 135/297 (45%), Gaps = 18/297 (6%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D ++  + P   +++ Y+ +I    R K  DE ++   ++K    I P  + +  +I  Y
Sbjct: 175 DMKSREISP---DVVTYNTMINGCYRVKKMDEAEKYFVEMK-GKNIEPTVVTYTTLIKGY 230

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSP-D 151
                +  AL++ +EM  + ++     ++TLL      GK+   + +  ++++KY++P D
Sbjct: 231 VSVDQVHDALRLVEEMKGYGIKPNAITYSTLLPGLCNAGKMSEAQSILKEMVDKYIAPKD 290

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-- 209
              +  LI     +  L+ A  V   M++  +      +G LI   C   + D A+KL  
Sbjct: 291 NSIFMRLISSQCEAGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKAGQHDRAVKLLD 350

Query: 210 ----KEDIMR---VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
               K+ I+R     +++P    +  +I+ LC+ G+ + A  +  ++++  ++ D    +
Sbjct: 351 KLIEKDIILRPQSTLHMEPSA--YNPMIEYLCSNGQTAKAEALVRQLLKLGVQ-DTTALN 407

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           +LI    + G  +    +LK M  R        Y+AL+  + K+ +   A   LD M
Sbjct: 408 TLIRGYAQEGSPDSAFELLKIMLRRKVDSEKSAYDALVQSYLKKNEPADAKAALDSM 464


>gi|302756087|ref|XP_002961467.1| hypothetical protein SELMODRAFT_77006 [Selaginella moellendorffii]
 gi|300170126|gb|EFJ36727.1| hypothetical protein SELMODRAFT_77006 [Selaginella moellendorffii]
          Length = 500

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 146/293 (49%), Gaps = 7/293 (2%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           +I  L ++    +  + L +L  D  I P  + F  +I  + + R++ERA ++F EM   
Sbjct: 17  LIDALSKSNRLGDAARAL-ELMCDAGIHPDVVTFTALIRGFCKNRMVERAWEIFQEMIKS 75

Query: 113 N-VQMTVKFFNTLLNPKLTCGKLDRMKELFQIM--EKYVSPDACSYNILIHGCVVSRRLE 169
           N  Q     +  L++      ++DR  EL + M  E+ + PD   YN ++ G   S R  
Sbjct: 76  NRCQPDCFLYGVLIDGYCKELRMDRALELLREMRVERRIQPDVVIYNSIVDGLCRSNRFL 135

Query: 170 DAWKVFDE-MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           +AWK  DE MV++   PT+VT+ +LI G C   ++  A+ +   ++    ++P    ++ 
Sbjct: 136 EAWKFLDETMVRQGCSPTVVTYTSLIRGACKAKKMKLAMTIWNAMLE-RKIQPTIVSYSV 194

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I GL   G +  A  V  EM     E++  IY++LI  L K+G  ++  A+ + MK  G
Sbjct: 195 IIDGLSKAGRVYDAYRVVREMETLGCELNVVIYTTLIDGLCKSGFLDDAYALYRIMKRSG 254

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             PN  TY  LI  FC+ +  E A  + D + D  C  +   Y  ++ GLC++
Sbjct: 255 AFPNQRTYATLIDTFCRNDRTETALGLFDHIRDY-CPLDVAMYTAVVSGLCRE 306



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 147/293 (50%), Gaps = 5/293 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDE- 108
           Y ++I    +    D   ++L +++ + RI P  +I+ +++    R+     A +  DE 
Sbjct: 85  YGVLIDGYCKELRMDRALELLREMRVERRIQPDVVIYNSIVDGLCRSNRFLEAWKFLDET 144

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRR 167
           M       TV  + +L+       K+     ++  M E+ + P   SY+++I G   + R
Sbjct: 145 MVRQGCSPTVVTYTSLIRGACKAKKMKLAMTIWNAMLERKIQPTIVSYSVIIDGLSKAGR 204

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           + DA++V  EM     +  +V + TLI GLC    +D+A  L   IM+     P+ + +A
Sbjct: 205 VYDAYRVVREMETLGCELNVVIYTTLIDGLCKSGFLDDAYALYR-IMKRSGAFPNQRTYA 263

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +LI   C       ALG+ +  +RD   +D  +Y++++S L +  R ++  A+ +EM+  
Sbjct: 264 TLIDTFCRNDRTETALGLFDH-IRDYCPLDVAMYTAVVSGLCRERRLDDARALFREMRLA 322

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK-GCKANPISYNVILGGLC 339
           G   ++  YN L+ G  +    E AF IL+E+GD  GC AN ++YN ++ G C
Sbjct: 323 GVSADTHAYNVLLHGAFRSGRSEEAFRILEELGDDPGCVANLLTYNTVIAGCC 375



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 126/266 (47%), Gaps = 3/266 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P +  F ++I    ++  L  A +  + M    +   V  F  L+        ++R  E+
Sbjct: 9   PNQHAFASLIDALSKSNRLGDAARALELMCDAGIHPDVVTFTALIRGFCKNRMVERAWEI 68

Query: 141 FQIMEKY--VSPDACSYNILIHGCVVSRRLEDAWKVFDEM-VKRRLQPTLVTFGTLIYGL 197
           FQ M K     PD   Y +LI G     R++ A ++  EM V+RR+QP +V + +++ GL
Sbjct: 69  FQEMIKSNRCQPDCFLYGVLIDGYCKELRMDRALELLREMRVERRIQPDVVIYNSIVDGL 128

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C   R  EA K  ++ M      P    + SLI+G C   ++ LA+ +   M+  KI+  
Sbjct: 129 CRSNRFLEAWKFLDETMVRQGCSPTVVTYTSLIRGACKAKKMKLAMTIWNAMLERKIQPT 188

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              YS +I  L KAGR  +   +++EM+  GC+ N V Y  LI G CK    + A+ +  
Sbjct: 189 IVSYSVIIDGLSKAGRVYDAYRVVREMETLGCELNVVIYTTLIDGLCKSGFLDDAYALYR 248

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
            M   G   N  +Y  ++   C++ +
Sbjct: 249 IMKRSGAFPNQRTYATLIDTFCRNDR 274



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 117/241 (48%), Gaps = 10/241 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L ++   D+    L+++   +   P +  +  +I  + R    E AL +
Sbjct: 223 NVVIYTTLIDGLCKSGFLDDAYA-LYRIMKRSGAFPNQRTYATLIDTFCRNDRTETALGL 281

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           FD +  +   + V  +  +++      +LD  + LF+ M    VS D  +YN+L+HG   
Sbjct: 282 FDHIRDY-CPLDVAMYTAVVSGLCRERRLDDARALFREMRLAGVSADTHAYNVLLHGAFR 340

Query: 165 SRRLEDAWKVFDEMVKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
           S R E+A+++ +E+         L+T+ T+I G CLE      + L  + MR   + PD 
Sbjct: 341 SGRSEEAFRILEELGDDPGCVANLLTYNTVIAGCCLE----SGMVLFYE-MRQRGIAPDF 395

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             +++LI  L   GE+  A  + EEM+   +   +G+   +++ L  + R+ +  A L E
Sbjct: 396 ATYSALIDRLLGSGEIRRAFDLCEEMLASGLSPPSGVLGRVVARLCWS-RRGDLAAKLIE 454

Query: 284 M 284
           M
Sbjct: 455 M 455



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 103/261 (39%), Gaps = 37/261 (14%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           +I P  + +  +I    +A  +  A ++  EM +   ++ V  + TL++     G LD  
Sbjct: 184 KIQPTIVSYSVIIDGLSKAGRVYDAYRVVREMETLGCELNVVIYTTLIDGLCKSGFLDDA 243

Query: 138 KELFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT-FGTLIY 195
             L++IM++  + P+  +Y  LI     + R E A  +FD +  R   P  V  +  ++ 
Sbjct: 244 YALYRIMKRSGAFPNQRTYATLIDTFCRNDRTETALGLFDHI--RDYCPLDVAMYTAVVS 301

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD--- 252
           GLC E R+D+A  L  + MR+  V  D   +  L+ G    G    A  + EE+  D   
Sbjct: 302 GLCRERRLDDARALFRE-MRLAGVSADTHAYNVLLHGAFRSGRSEEAFRILEELGDDPGC 360

Query: 253 -----------------------------KIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
                                         I  D   YS+LI  L  +G       + +E
Sbjct: 361 VANLLTYNTVIAGCCLESGMVLFYEMRQRGIAPDFATYSALIDRLLGSGEIRRAFDLCEE 420

Query: 284 MKERGCKPNSVTYNALISGFC 304
           M   G  P S     +++  C
Sbjct: 421 MLASGLSPPSGVLGRVVARLC 441



 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 70/190 (36%), Gaps = 40/190 (21%)

Query: 64  DEMQQILHQLKHDTRIVPKEI-IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
           D  +  L    H     P ++ ++  V+    R R L+ A  +F EM    V      +N
Sbjct: 273 DRTETALGLFDHIRDYCPLDVAMYTAVVSGLCRERRLDDARALFREMRLAGVSADTHAYN 332

Query: 123 TLLNPKLTCGKLDRMKELFQIME------------------------------------K 146
            LL+     G   R +E F+I+E                                    +
Sbjct: 333 VLLHGAFRSG---RSEEAFRILEELGDDPGCVANLLTYNTVIAGCCLESGMVLFYEMRQR 389

Query: 147 YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA 206
            ++PD  +Y+ LI   + S  +  A+ + +EM+   L P     G ++  LC   R D A
Sbjct: 390 GIAPDFATYSALIDRLLGSGEIRRAFDLCEEMLASGLSPPSGVLGRVVARLCWSRRGDLA 449

Query: 207 LKLKEDIMRV 216
            KL E  M V
Sbjct: 450 AKLIEMAMAV 459


>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 783

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 158/335 (47%), Gaps = 52/335 (15%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS 110
           DLII KL +   F+   ++L +LK+    +  E  F  +I  Y  A + E+A++ F  M 
Sbjct: 97  DLIIGKLIKENAFELYWKVLQELKNSAIKISSE-AFSVLIEAYSEAGMDEKAVESFGLMR 155

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMKELF--------QIMEKYVSPDACSYNILIHGC 162
            F+ +  +  FN +L+  +        KE F        Q+++  ++PD  +Y ILIHG 
Sbjct: 156 DFDCKPDLFAFNLILHFLVR-------KEAFLLALAVYNQMLKCNLNPDVVTYGILIHGL 208

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             + + +DA  +FDEM  R + P  + +  ++ GLC   ++ +A +L    MR      D
Sbjct: 209 CKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSK-MRASGCNRD 267

Query: 223 GQVFASLIKGLCAVGELSLA-------------LGV----------------------KE 247
              +  L+ G C  G L  A             LGV                       +
Sbjct: 268 LITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQ 327

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           +M+R+ I+ D  +Y+ +I  L + GR  E   +L EM ERG +P+++ YNALI GFC   
Sbjct: 328 KMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMG 387

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             + A ++  E+    C  N  +Y++++ G+CK+G
Sbjct: 388 YLDEAESLRLEISKHDCFPNNHTYSILICGMCKNG 422



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 131/259 (50%), Gaps = 10/259 (3%)

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
           +FDEM         D  I+P +II+  V+    +A+ +  A ++F +M +      +  +
Sbjct: 220 LFDEMT--------DRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITY 271

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           N LLN     G LD    L Q++ K         Y  LI+G   +RR E+A   + +M++
Sbjct: 272 NVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLR 331

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
             ++P ++ +  +I GL  E RV EAL L  + M    ++PD   + +LIKG C +G L 
Sbjct: 332 ENIKPDVMLYTIMIRGLSQEGRVTEALTLLGE-MTERGLRPDTICYNALIKGFCDMGYLD 390

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  ++ E+ +     +   YS LI  + K G  N+   I KEM++ GC P+ VT+N+LI
Sbjct: 391 EAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLI 450

Query: 301 SGFCKEEDFEAAFTILDEM 319
           +G CK    E A  +  +M
Sbjct: 451 NGLCKANRLEEARLLFYQM 469



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 121/245 (49%), Gaps = 2/245 (0%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
           + AL +FDEM+   +      ++ +L+      K+   + LF  M     + D  +YN+L
Sbjct: 215 QDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVL 274

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           ++G   S  L+DA+ +   + K      ++ +G LI GL    R +EA    + ++R  N
Sbjct: 275 LNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLR-EN 333

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           +KPD  ++  +I+GL   G ++ AL +  EM    +  D   Y++LI      G  +E  
Sbjct: 334 IKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAE 393

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           ++  E+ +  C PN+ TY+ LI G CK      A  I  EM   GC  + +++N ++ GL
Sbjct: 394 SLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGL 453

Query: 339 CKDGK 343
           CK  +
Sbjct: 454 CKANR 458



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 144/313 (46%), Gaps = 24/313 (7%)

Query: 47  LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQM 105
           ++ Y  +I  L RA+ ++E      ++  +  I P  +++  +I G     R+ E AL +
Sbjct: 303 VIGYGCLINGLFRARRYEEAHMWYQKMLREN-IKPDVMLYTIMIRGLSQEGRVTE-ALTL 360

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIHGCVV 164
             EM+   ++     +N L+      G LD  + L  +I +    P+  +Y+ILI G   
Sbjct: 361 LGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCK 420

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA----------------LK 208
           +  +  A  +F EM K    P++VTF +LI GLC   R++EA                L+
Sbjct: 421 NGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSLFLR 480

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           L +   +V+++         +++ LC  G +  A  +  ++V   +  D   Y+ LI+  
Sbjct: 481 LSQGTDKVFDIAS----LQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGF 536

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K G  N    + KEM+ +G  P+SVTY  LI G  +    E A  I ++M  KGC    
Sbjct: 537 CKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPES 596

Query: 329 ISYNVILGGLCKD 341
            +Y  I+   C++
Sbjct: 597 STYKTIMTWSCRE 609



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 3/242 (1%)

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYN 156
           ++ +A ++  ++    V   ++ +N L+N     G ++   +LF+ M+ K   PD+ +Y 
Sbjct: 506 MILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYG 565

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            LI G   + R EDA ++F++MVK+   P   T+ T++   C E  +  AL +    +R 
Sbjct: 566 TLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMKYLRD 625

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           +    D +V   ++       EL  A+    EM       D   Y+  +  L +A R  E
Sbjct: 626 FRGWEDEKV--RVVAESFDNEELQTAIRRLLEMDIKSKNFDLAPYTIFLIGLVQAKRDCE 683

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
             AI   +K+     +S +   LI   C  E+ + A  +     ++G +  P   N +L 
Sbjct: 684 AFAIFSVLKDFKMNISSASCVMLIGRLCMVENLDMAMDVFLFTLERGFRLMPPICNQLLC 743

Query: 337 GL 338
            L
Sbjct: 744 NL 745



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 73/188 (38%), Gaps = 36/188 (19%)

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           +++I   +     E  WKV  E+    ++ +   F  LI     E  +DE       +MR
Sbjct: 97  DLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYS-EAGMDEKAVESFGLMR 155

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
            ++ KPD   F  ++  L       LAL V  +M++  +                     
Sbjct: 156 DFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNL--------------------- 194

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
                          P+ VTY  LI G CK    + A  + DEM D+G   N I Y+++L
Sbjct: 195 --------------NPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVL 240

Query: 336 GGLCKDGK 343
            GLC+  K
Sbjct: 241 SGLCQAKK 248


>gi|356495784|ref|XP_003516753.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 558

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 17/338 (5%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRA 60
           +P+S +    L R   D   AL  FK          A  L  +R++   Y+L++  LG+ 
Sbjct: 124 QPSSGLVSQVLNRFSNDWVPALGFFK---------WAKSLTGYRHSPELYNLMVDILGKC 174

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           + FD M +++ ++      V  E +   V+    RAR  E A++ F  M  F V+     
Sbjct: 175 RSFDSMSELVEEMARLEGYVTLETM-TKVMRRLARARKHEDAIEAFGRMEKFGVKKDTAA 233

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
            N L++  +    ++   ++    +  +   + S+N+L+HG   +R  ++A K  ++M +
Sbjct: 234 LNVLIDALVKGDSVEHAHKVVLEFKGSIPLSSRSFNVLMHGWCRARDFDNARKAMEDMKE 293

Query: 181 RRLQPTLVTFGTLI--YGLCLELR-VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
              +P + ++   I  YG   + R VD+ L    + MR     P+   + S++  L   G
Sbjct: 294 HGFEPDVFSYTNFIEAYGHERDFRKVDQVL----EEMRENGCPPNAVTYTSVMLHLGKAG 349

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           +L  AL V E+M  D    D   YSS+I  L KAGR  +   + ++M ++G   + VTYN
Sbjct: 350 QLRKALEVYEKMKSDGCVADTPFYSSMIFILGKAGRLKDACDVFEDMPKQGVVRDVVTYN 409

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           ++IS  C     E A  +L EM D  CK N  +Y+ +L
Sbjct: 410 SMISTACAHSREETALRLLKEMEDGSCKPNVGTYHRLL 447



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 41/206 (19%), Positives = 84/206 (40%), Gaps = 37/206 (17%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y  ++  LG+A    +  ++  ++K D   V     + ++I   G+A  L+ A  +
Sbjct: 334 NAVTYTSVMLHLGKAGQLRKALEVYEKMKSDG-CVADTPFYSSMIFILGKAGRLKDACDV 392

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-------------------- 145
           F++M    V   V  +N++++      + +    L + ME                    
Sbjct: 393 FEDMPKQGVVRDVVTYNSMISTACAHSREETALRLLKEMEDGSCKPNVGTYHRLLKMCCK 452

Query: 146 ----------------KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
                             +SPD  +Y++L++    S ++EDA+   +EMV R   P   T
Sbjct: 453 KKRMKVLKFLLDHMFKNNISPDLATYSLLVNALRKSGKVEDAYSFLEEMVLRGFTPKPST 512

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMR 215
              L   L  +  ++E ++++E + R
Sbjct: 513 LKKLAGELESKSMLEEKVRVEEWMDR 538


>gi|147788269|emb|CAN69960.1| hypothetical protein VITISV_032887 [Vitis vinifera]
          Length = 472

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 119/213 (55%), Gaps = 3/213 (1%)

Query: 130 TCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR-RLQPTL 187
           + G+ +   EL + +  K+  PD+ +YN +I     +R L   +   DE+    +L+P L
Sbjct: 180 SAGREEHAIELVKELSLKHSPPDSFTYNFIIRHLCKTRALSTVYNFIDELQNSFQLKPDL 239

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           VT+  LI  +C    + EA +L E ++     KPD  V+ +++KG C + + S A+GV +
Sbjct: 240 VTYTILIDNVCNGKNLREATRLLE-VLGEAGFKPDCYVYNTIMKGYCILDKGSEAIGVYK 298

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           +M  + +E D   Y++LI  L K+GR  E    L  M E G  P++VTY +L++G C+E 
Sbjct: 299 KMKEEGVEPDLVTYNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGLCREG 358

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +   A  +L+EM  KGC  N  +YN +L GLCK
Sbjct: 359 NALGALALLEEMEAKGCSPNSCTYNTLLHGLCK 391



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 105/230 (45%), Gaps = 6/230 (2%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP   +L+ Y ++I  +   K   E  ++L  L  +    P   ++  ++  Y      
Sbjct: 235 LKP---DLVTYTILIDNVCNGKNLREATRLLEVLG-EAGFKPDCYVYNTIMKGYCILDKG 290

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNIL 158
             A+ ++ +M    V+  +  +NTL+      G++   ++   IM +    PDA +Y  L
Sbjct: 291 SEAIGVYKKMKEEGVEPDLVTYNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSL 350

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           ++G         A  + +EM  +   P   T+ TL++GLC    ++  ++L   +M+   
Sbjct: 351 MNGLCREGNALGALALLEEMEAKGCSPNSCTYNTLLHGLCKLRMLERGIELY-GVMKSGG 409

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           +K +   +A+ ++ LC  G ++ A    + +V  K   D   YS+L ++L
Sbjct: 410 MKLEKASYATFVRALCKEGRVAEAYEAFDYVVESKSFDDVTAYSTLENSL 459



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 5/211 (2%)

Query: 134 LDRMKELFQIMEKYVSP-DACSYNILIHGCVVSRRLEDAWKVFDEMVKRR--LQPTLVTF 190
           LD  K    I     +P D   +N L+        + D+      M+K +    P   T+
Sbjct: 75  LDAKKLFASITTTSTTPLDLRFHNALLQSYSSISTVNDSISFLRHMIKSQPSFSPERSTY 134

Query: 191 GTLIYGLCLELRVD-EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
             L+   C     D  A+    ++M  +   PD       ++ LC+ G    A+ + +E+
Sbjct: 135 HILLSQSCKSPNSDLSAVHQTLNLMVTHGFPPDRVTTDIAVRSLCSAGREEHAIELVKEL 194

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER-GCKPNSVTYNALISGFCKEED 308
                  D+  Y+ +I  L K    +     + E++     KP+ VTY  LI   C  ++
Sbjct: 195 SLKHSPPDSFTYNFIIRHLCKTRALSTVYNFIDELQNSFQLKPDLVTYTILIDNVCNGKN 254

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLC 339
              A  +L+ +G+ G K +   YN I+ G C
Sbjct: 255 LREATRLLEVLGEAGFKPDCYVYNTIMKGYC 285


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 155/304 (50%), Gaps = 2/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  + + Y  +I  L ++       Q+L +++    + P  I++  +I  + + +L+ 
Sbjct: 152 KRFHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVI 211

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
            A  ++ EM    +   V  FN+L+      G+L     L   M    V+P+  ++NILI
Sbjct: 212 DAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILI 271

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G      ++ A  V   M+K+ ++P +VT+ +L+ G  L   V++A K   + + +  V
Sbjct: 272 DGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKA-KHVFNTISLRGV 330

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   ++ +I GLC    +  A+ + +EM    +  +   YSSLI  L K+GR ++   
Sbjct: 331 TPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWD 390

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           ++ E+  RG   N +TYN+L++G CK    + A  +L +M D+G + +  +Y  ++ GLC
Sbjct: 391 LIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLC 450

Query: 340 KDGK 343
           K+G+
Sbjct: 451 KNGR 454



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 123/247 (49%), Gaps = 3/247 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY--VSPDACSYN 156
           ++ AL   D +      +    + TL+N     G+     +L + +E    V PD   Y 
Sbjct: 139 VKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYT 198

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            +I      + + DA+ ++ EM+ +++ P +VTF +LIYG C+  ++ EA+ L  + M +
Sbjct: 199 AIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNE-MSL 257

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
            NV P+   F  LI GLC  GE+  A  V   M++  +E +   Y+SL+   F     N+
Sbjct: 258 NNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNK 317

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +   +  RG  PN  +Y+ +I+G CK +  + A  +  EM  K    N ++Y+ ++ 
Sbjct: 318 AKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLID 377

Query: 337 GLCKDGK 343
           GLCK G+
Sbjct: 378 GLCKSGR 384



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 144/302 (47%), Gaps = 37/302 (12%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           +I P  + F ++I  +     L+ A+ + +EMS  NV   V  FN L++     G++ + 
Sbjct: 224 KIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKA 283

Query: 138 KELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
             +  +M K  V P+  +Y  L+ G  + + +  A  VF+ +  R + P + ++  +I G
Sbjct: 284 TSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMING 343

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC    VDEA+KL ++ M + N+ P+   ++SLI GLC  G +S    + +E+       
Sbjct: 344 LCKNKMVDEAVKLFKE-MHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPA 402

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL----------------- 299
           +   Y+SL++ L K  + ++  A+L +MK+ G +P+  TY  L                 
Sbjct: 403 NIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIY 462

Query: 300 ------------------ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
                             I+G CKE  F+ A ++L +M D GC  + ++Y  ++  L K+
Sbjct: 463 QDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKN 522

Query: 342 GK 343
            K
Sbjct: 523 NK 524



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 126/240 (52%), Gaps = 2/240 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + + +++  Y   + + +A  +F+ +S   V   V  ++ ++N       +D   +L
Sbjct: 297 PNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKL 356

Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ M  K ++P+  +Y+ LI G   S R+ D W + DE+  R     ++T+ +L+ GLC 
Sbjct: 357 FKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCK 416

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             +VD+A+ L    M+   ++PD   + +L+ GLC  G L  A  + ++++     ++  
Sbjct: 417 NHQVDKAIALLTK-MKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIR 475

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           +Y+ +I+ L K G  +E  ++L +M++ GC P++VTY  LIS   K      A  +L EM
Sbjct: 476 MYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREM 535



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 125/275 (45%), Gaps = 11/275 (4%)

Query: 67  QQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126
             ILH   H     P    F  ++    +    + A+    +M    +Q  +  FN L+N
Sbjct: 41  NHILHMNNH----TPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILIN 96

Query: 127 PKLTCGKLDRMKELFQIMEKYV----SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR 182
                  L ++   F ++ K +     PD  + N L+ G  ++ ++++A    D ++++R
Sbjct: 97  ---CFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKR 153

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
                V++GTLI GLC       AL+L   I  +  V+PD  ++ ++I   C    +  A
Sbjct: 154 FHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDA 213

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
             +  EM+  KI  +   ++SLI      G+  E   +L EM      PN  T+N LI G
Sbjct: 214 YDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDG 273

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            CKE + + A ++L  M  +G + N ++Y  ++ G
Sbjct: 274 LCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDG 308



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 66/141 (46%)

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
           +D+A+     I+ + N  P    F  ++  L  +    +A+   ++M    I+ +   ++
Sbjct: 33  LDDAVSSFNHILHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFN 92

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
            LI+      + N   +++ ++ + G +P++VT N L+ G C     + A    D +  K
Sbjct: 93  ILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRK 152

Query: 323 GCKANPISYNVILGGLCKDGK 343
               + +SY  ++ GLCK G+
Sbjct: 153 RFHLDQVSYGTLINGLCKSGE 173


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 118/206 (57%), Gaps = 3/206 (1%)

Query: 139 ELFQIMEKYVS--PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           ++F +M K V+  P++ SY+ILIHG     RLE+A+ + D+M ++  QP+  T+  LI  
Sbjct: 251 KVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKA 310

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC    +D+A  L ++++     KP+   +  LI GLC  G++  A GV  +MV+D+I  
Sbjct: 311 LCDRGLIDKAFNLFDEMIP-RGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFP 369

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
               Y++LI+   K GR      +L  M++R CKPN  T+N L+ G C+      A  +L
Sbjct: 370 SVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLL 429

Query: 317 DEMGDKGCKANPISYNVILGGLCKDG 342
             M D G   + +SYNV++ GLC++G
Sbjct: 430 KRMLDNGLSPDIVSYNVLIDGLCREG 455



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 138/284 (48%), Gaps = 9/284 (3%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           K+FD M +       +    P  + +  +I        LE A  + D+M     Q + + 
Sbjct: 251 KVFDVMSK-------EVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRT 303

Query: 121 FNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +  L+      G +D+   LF +++ +   P+  +Y +LI G     ++E+A  V  +MV
Sbjct: 304 YTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMV 363

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           K R+ P+++T+  LI G C + RV  A +L   +M     KP+ + F  L++GLC VG+ 
Sbjct: 364 KDRIFPSVITYNALINGYCKDGRVVPAFELLT-VMEKRACKPNVRTFNELMEGLCRVGKP 422

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A+ + + M+ + +  D   Y+ LI  L + G  N    +L  M     +P+ +T+ A+
Sbjct: 423 YKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAI 482

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I+ FCK+   + A   L  M  KG   + ++   ++ G+CK GK
Sbjct: 483 INAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGK 526



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 139/299 (46%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y ++I  L R    +E   +  ++  D RI P  I +  +I  Y +   +  A ++
Sbjct: 335 NVHTYTVLIDGLCRDGKIEEANGVCRKMVKD-RIFPSVITYNALINGYCKDGRVVPAFEL 393

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
              M     +  V+ FN L+      GK  +   L + +++  +SPD  SYN+LI G   
Sbjct: 394 LTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCR 453

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +  A+K+   M    ++P  +TF  +I   C + + D A      ++R   +  D  
Sbjct: 454 EGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLR-KGISLDEV 512

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
              +LI G+C VG+   AL + E +V+ +I       + ++  L K  +  E  A+L ++
Sbjct: 513 TGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKI 572

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + G  P+ VTY  L+ G  +  D   +F IL+ M   GC  N   Y +I+ GLC+ G+
Sbjct: 573 NKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGR 631



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 96/177 (54%), Gaps = 2/177 (1%)

Query: 168 LEDAWKVFDEMVKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           L DA KVFD M K     P  V++  LI+GLC   R++EA  LK D M     +P  + +
Sbjct: 246 LRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLK-DQMGEKGCQPSTRTY 304

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
             LIK LC  G +  A  + +EM+    + +   Y+ LI  L + G+  E   + ++M +
Sbjct: 305 TVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVK 364

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               P+ +TYNALI+G+CK+     AF +L  M  + CK N  ++N ++ GLC+ GK
Sbjct: 365 DRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGK 421



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 79/152 (51%)

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           +L+ G C  L + +ALK+ + + +     P+   ++ LI GLC VG L  A G+K++M  
Sbjct: 235 SLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGE 294

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
              +     Y+ LI AL   G  ++   +  EM  RGCKPN  TY  LI G C++   E 
Sbjct: 295 KGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEE 354

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           A  +  +M       + I+YN ++ G CKDG+
Sbjct: 355 ANGVCRKMVKDRIFPSVITYNALINGYCKDGR 386



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 118/272 (43%), Gaps = 4/272 (1%)

Query: 70  LHQLKH--DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127
           +H LK   D  + P  + +  +I    R   +  A ++   M+ F+++     F  ++N 
Sbjct: 426 VHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINA 485

Query: 128 KLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
               GK D       +M  K +S D  +   LI G     +  DA  + + +VK R+  T
Sbjct: 486 FCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTT 545

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
             +   ++  L    +V E L +   I ++  + P    + +L+ GL   G+++ +  + 
Sbjct: 546 PHSLNVILDMLSKGCKVKEELAMLGKINKL-GLVPSVVTYTTLVDGLIRSGDITGSFRIL 604

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           E M       +   Y+ +I+ L + GR  E   +L  M++ G  PN VTY  ++ G+   
Sbjct: 605 ELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNN 664

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
              + A   +  M ++G + N   Y+ +L G 
Sbjct: 665 GKLDRALETVRAMVERGYELNDRIYSSLLQGF 696


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 117/206 (56%), Gaps = 4/206 (1%)

Query: 137 MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           + E   +  +    + CS+NIL+   + + RL+DA + FDEM      P +VT+GT+++G
Sbjct: 240 LDEAIALFRELPDKNVCSHNILLKALLSAGRLKDACQHFDEMSS---PPDVVTYGTMVHG 296

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
            C+   ++ A+KL  D M    ++ +  V+ S+I  LC  G++S AL V E+M    + +
Sbjct: 297 YCVRGELENAVKLL-DEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVAL 355

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           DA +++++IS     G       + +EM++RG   + VT+ ALI+G C+  + + A  +L
Sbjct: 356 DAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVL 415

Query: 317 DEMGDKGCKANPISYNVILGGLCKDG 342
            EM DKG   + ++Y V++ G CK G
Sbjct: 416 QEMVDKGLDVDVVTYTVLIDGYCKRG 441



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 134/260 (51%), Gaps = 2/260 (0%)

Query: 85  IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM 144
           ++ +VI        +  AL++ ++M+   V +    F T+++   + G L   + LF+ M
Sbjct: 324 VYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEM 383

Query: 145 EKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
           +K  ++ D  ++  LI+G   +  L++A +V  EMV + L   +VT+  LI G C    +
Sbjct: 384 QKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNM 443

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
            EA ++  + M    V P+   + +L  GLC  G++  A  +  EM    +E++   Y+S
Sbjct: 444 VEAFRVHNE-MVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNS 502

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LI+ L K G   +   I+ EM+  G + +  TY  LI   CK  +F+ A  +L EM DKG
Sbjct: 503 LINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKG 562

Query: 324 CKANPISYNVILGGLCKDGK 343
            K +  +YNV++ G C  G+
Sbjct: 563 IKPSIATYNVLMNGFCMSGR 582



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 128/279 (45%), Gaps = 42/279 (15%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL 158
           L+ A+ +F E+   NV       N LL   L+ G+L    + F  M     PD  +Y  +
Sbjct: 240 LDEAIALFRELPDKNVCS----HNILLKALLSAGRLKDACQHFDEMSS--PPDVVTYGTM 293

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           +HG  V   LE+A K+ DEM  + L+     + ++I  LC + +V +AL++ ED M ++ 
Sbjct: 294 VHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLED-MTMHG 352

Query: 219 VKPDGQVFAS-----------------------------------LIKGLCAVGELSLAL 243
           V  D  VF +                                   LI GLC  GEL  A 
Sbjct: 353 VALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEAD 412

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            V +EMV   +++D   Y+ LI    K G   E   +  EM  R   PN VTY AL  G 
Sbjct: 413 RVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGL 472

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           CK+ D  AA  +L EM +KG + N  +YN ++ GLCK G
Sbjct: 473 CKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFG 511



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 128/259 (49%), Gaps = 2/259 (0%)

Query: 84  IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQI 143
           ++F  VI  +     L  A ++F+EM    +         L+N     G+L     + Q 
Sbjct: 358 VVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQE 417

Query: 144 M-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR 202
           M +K +  D  +Y +LI G      + +A++V +EMV RR+ P +VT+  L  GLC +  
Sbjct: 418 MVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGD 477

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
           V  A +L  ++     ++ +   + SLI GLC  G L  A+ +  EM       D   Y+
Sbjct: 478 VRAANELLHEMCN-KGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYT 536

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           +LI  L K+G  +    +L+EM ++G KP+  TYN L++GFC     E    +L+ M +K
Sbjct: 537 TLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEK 596

Query: 323 GCKANPISYNVILGGLCKD 341
             + N ++YN ++   C D
Sbjct: 597 NVRPNVVTYNSLMKQYCID 615



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 114/225 (50%), Gaps = 8/225 (3%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNI 157
           LE+A+++  EM +   +  V  + TL++     G+ DR   + Q +++K + P   +YN+
Sbjct: 513 LEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNV 572

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI---M 214
           L++G  +S R+E   K+ + M+++ ++P +VT+ +L+   C    +D+ +K   +I   M
Sbjct: 573 LMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYC----IDKNMKSTTEIYKGM 628

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
               V P+   +  LIKG C    +  AL   +EM+   + + A  YS+LI  L K  + 
Sbjct: 629 HSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKF 688

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           +E      +M+  G       Y+  +     E++ E+  T+ DE+
Sbjct: 689 SEARVFFDKMRNEGLTAEPDVYSFYMDISFNEDNLESTITLCDEL 733



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 119/259 (45%), Gaps = 2/259 (0%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           R+ P  + +  +     +   +  A ++  EM +  +++ V  +N+L+N     G L++ 
Sbjct: 457 RVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQA 516

Query: 138 KELFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
             +   ME      D  +Y  LI     S   + A  +  EM+ + ++P++ T+  L+ G
Sbjct: 517 MRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNG 576

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
            C+  RV+   KL E ++   NV+P+   + SL+K  C    +     + + M   ++  
Sbjct: 577 FCMSGRVEGGKKLLEWMLE-KNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAP 635

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +   Y+ LI    KA    E     +EM E+G +  + +Y+ALI    K++ F  A    
Sbjct: 636 NENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFF 695

Query: 317 DEMGDKGCKANPISYNVIL 335
           D+M ++G  A P  Y+  +
Sbjct: 696 DKMRNEGLTAEPDVYSFYM 714


>gi|255660918|gb|ACU25628.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 484

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 165/318 (51%), Gaps = 15/318 (4%)

Query: 35  TEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVPKEII 85
           T  H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +   E +
Sbjct: 24  TSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDM 82

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIM 144
           +  +I  YG+A +++ ++++F +M    V+ T K ++TL    L  G+    K  F +++
Sbjct: 83  WVLMIDSYGKAGIVQESVKLFQKMEELGVERTTKSYDTLFKVILRRGRFMMAKRYFNKML 142

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
            + + P   ++N++I G  +S ++E A + FD+M  R + P ++T+ T+I G     ++D
Sbjct: 143 SEGIEPTRHTFNVMIWGFFLSGKVETANRFFDDMKSREISPDVITYNTMINGYYRVKKMD 202

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  YS+L
Sbjct: 203 EAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTL 261

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           +  L  A + +E  ++LKEM ++   P  NS+ +  LISG CK  + +AA  +L  M   
Sbjct: 262 LPGLCNAEKMSEARSVLKEMVDKYIAPTDNSI-FMRLISGQCKTGNLDAAADVLKAMIRL 320

Query: 323 GCKANPISYNVILGGLCK 340
                   Y V++   CK
Sbjct: 321 SVPTEAGHYGVLIENFCK 338



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 129/263 (49%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + FD+M S  +   V  +NT++N      K+D  ++ F  M+ + 
Sbjct: 157 IWGFFLSGKV-ETANRFFDDMKSREISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGRN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   +++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + ++++  Y    D  +F  LI G C  G L  A  V + M+R  +  +AG Y  LI  
Sbjct: 276 SVLKEMVDKYIAPTDNSIFMRLISGQCKTGNLDAAADVLKAMIRLSVPTEAGHYGVLIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             KA + ++   +L ++ E+    +P S        YN +I   C       A  ++ ++
Sbjct: 336 FCKADQHDKAVKLLDKLIEKDIILRPQSTLHMEPSAYNPMIEYLCNNGQTAKAEALVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +P + N ++ G  ++G
Sbjct: 396 LKLGVQ-DPTALNTLVRGHSQEG 417



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 131/303 (43%), Gaps = 53/303 (17%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           + FD+M+           I P  I +  +I  Y R + ++ A + F EM   N++ TV  
Sbjct: 171 RFFDDMKS--------REISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVT 222

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           + TL+   ++  ++D    L + M+ Y + P+A +Y+ L+ G   + ++ +A  V  EMV
Sbjct: 223 YTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSVLKEMV 282

Query: 180 KRRLQPTLVT-FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
            + + PT  + F  LI G C    +D A  + + ++R+ +V  +   +  LI+  C   +
Sbjct: 283 DKYIAPTDNSIFMRLISGQCKTGNLDAAADVLKAMIRL-SVPTEAGHYGVLIENFCKADQ 341

Query: 239 LSLALGVKEEMVRDKI--------EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
              A+ + ++++   I         M+   Y+ +I  L   G+  +  A+++++ + G +
Sbjct: 342 HDKAVKLLDKLIEKDIILRPQSTLHMEPSAYNPMIEYLCNNGQTAKAEALVRQLLKLGVQ 401

Query: 291 -----------------PNSV-----------------TYNALISGFCKEEDFEAAFTIL 316
                            P+S                   Y++L+  + K+ +   A   L
Sbjct: 402 DPTALNTLVRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYDSLVQSYLKKNEPADAKXAL 461

Query: 317 DEM 319
           D M
Sbjct: 462 DSM 464



 Score = 37.7 bits (86), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 55/116 (47%)

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I+ L    +L+ A  +  +M +  +E D  ++  +I +  KAG   E   + ++M+E G
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWVLMIDSYGKAGIVQESVKLFQKMEELG 110

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
            +  + +Y+ L     +   F  A    ++M  +G +    ++NV++ G    GK 
Sbjct: 111 VERTTKSYDTLFKVILRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKV 166


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/211 (35%), Positives = 114/211 (54%), Gaps = 1/211 (0%)

Query: 132 GKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           G  + M  + ++  K VSPD  SYN LI+G   +++L++A  +  EM      P  VT  
Sbjct: 159 GVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCT 218

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           TL+ GLC + R+DEA++L E  M+      D  ++ +LI G C  G L     + +EM+ 
Sbjct: 219 TLMDGLCKDGRMDEAMELLE-AMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLG 277

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
             I  +   YS L+  L + G+  E   +L  M E G  P+ VTY  LI G CK+     
Sbjct: 278 KGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATH 337

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           A  +L+ M +KG + + ++YNV+L GLCK+G
Sbjct: 338 AMDLLNLMVEKGEEPSNVTYNVLLSGLCKEG 368



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 146/306 (47%), Gaps = 5/306 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K    +++ Y+ +I  L +AK   E   +L +++      P  +    ++    +   ++
Sbjct: 173 KSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA-AGCFPNSVTCTTLMDGLCKDGRMD 231

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
            A+++ + M        V  + TL++     G LDR KELF +++ K +S +  +Y+ L+
Sbjct: 232 EAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLV 291

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           HG     + ++A  V + M +  + P +VT+  LI GLC + R   A+ L  ++M     
Sbjct: 292 HGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLL-NLMVEKGE 350

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +P    +  L+ GLC  G +  A  +   M+    + D   Y++L+  L   G+ +E   
Sbjct: 351 EPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALK 410

Query: 280 ILKEM--KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           +   M   E   +PN  T+N LI G CKE     A  I  +M  KG   N ++YN++LGG
Sbjct: 411 LFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGG 470

Query: 338 LCKDGK 343
             K GK
Sbjct: 471 CLKAGK 476



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 151/323 (46%), Gaps = 29/323 (8%)

Query: 36  EAHPLKPFRYNLLHYDLIIT------KLGRAK-MFDEMQQILHQLKHDTRIVPKEIIFCN 88
           EA   K F  +++ Y  +I+       L R K +FDEM                + I  N
Sbjct: 238 EAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEML--------------GKGISAN 283

Query: 89  VIGF----YGRARL--LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ 142
           V+ +    +G  RL   + A  + + M+   +   V  +  L++     G+     +L  
Sbjct: 284 VVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLN 343

Query: 143 IM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
           +M EK   P   +YN+L+ G      + DA+K+   M+++  +  +VT+ TL+ GLC + 
Sbjct: 344 LMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKG 403

Query: 202 RVDEALKLKEDIMRVYN-VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
           +VDEALKL   +    N ++P+   F  LI GLC  G L+ A+ +  +MV+     +   
Sbjct: 404 KVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVT 463

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
           Y+ L+    KAG+  E   + K++ + G  PNS TY+ LI GFCK      A  +  EM 
Sbjct: 464 YNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMR 523

Query: 321 DKGCKANPISYNVILGGLCKDGK 343
             G       YN ++  LCK+G 
Sbjct: 524 THGLNPALFDYNTLMASLCKEGS 546



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 124/252 (49%), Gaps = 8/252 (3%)

Query: 93  YGRARLLERALQMFDEMSSF-NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPD 151
           YG A  + R +   D + SF ++   ++ F     P+L  G +        ++++  + +
Sbjct: 90  YGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGVVGL------VLKRGFTVN 143

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
               NI++ G   +  + +A  +  EM ++ + P +V++ TLI GLC   ++ EA+ L  
Sbjct: 144 VFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLL 203

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           + M      P+     +L+ GLC  G +  A+ + E M +   + D  +Y +LIS     
Sbjct: 204 E-MEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNN 262

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G  +    +  EM  +G   N VTY+ L+ G C+   ++ A T+L+ M + G   + ++Y
Sbjct: 263 GNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTY 322

Query: 332 NVILGGLCKDGK 343
             ++ GLCKDG+
Sbjct: 323 TGLIDGLCKDGR 334



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 156/325 (48%), Gaps = 14/325 (4%)

Query: 25  FKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKL---GRAKMFDEMQQILHQLKHDTRIVP 81
           +K  N   N    H + P   +++ Y  +I  L   GRA    ++  ++ +   +    P
Sbjct: 300 WKEANTVLNAMAEHGIHP---DVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEE----P 352

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
             + +  ++    +  L+  A ++   M     +  V  +NTL+      GK+D   +LF
Sbjct: 353 SNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLF 412

Query: 142 QIM---EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
             M   E  + P+  ++N+LI G     RL  A K+  +MVK+     LVT+  L+ G  
Sbjct: 413 NSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCL 472

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              ++ EA++L + ++ +  V P+   ++ LI G C +  L++A G+  EM    +    
Sbjct: 473 KAGKIKEAMELWKQVLDLGFV-PNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPAL 531

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y++L+++L K G   +  ++ +EM    C+P+ +++N +I G  K  DF+    +  +
Sbjct: 532 FDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMK 591

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M + G + + ++++ ++  L K G+
Sbjct: 592 MVEMGLRPDALTFSTLINRLSKLGE 616



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 123/256 (48%), Gaps = 3/256 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ Y++++    +A    E  ++  Q+  D   VP    +  +I  + + R+L  A  +
Sbjct: 460 NLVTYNMLLGGCLKAGKIKEAMELWKQVL-DLGFVPNSFTYSILIDGFCKMRMLNIAKGL 518

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F EM +  +   +  +NTL+      G L++ K LFQ M      PD  S+N +I G + 
Sbjct: 519 FCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLK 578

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +   +   ++  +MV+  L+P  +TF TLI  L     +DEA K   + M      PD  
Sbjct: 579 AGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEA-KSALERMVASGFTPDAL 637

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           V+ SL+KGL + G+ +  + +  +M      +D  I S++++ L  + ++ +   +L   
Sbjct: 638 VYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVMELLPTF 697

Query: 285 KERGCKPNSVTYNALI 300
            +   +  S++ N L+
Sbjct: 698 FQGTSEGASISCNELL 713



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 123/250 (49%), Gaps = 10/250 (4%)

Query: 99  LERALQMFDEM--SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC--- 153
           ++ AL++F+ M  +   ++  V  FN L+     C K  R+ +  +I  K V   +C   
Sbjct: 405 VDEALKLFNSMFDNENCLEPNVFTFNMLIGG--LC-KEGRLTKAVKIHRKMVKKGSCGNL 461

Query: 154 -SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN+L+ GC+ + ++++A +++ +++     P   T+  LI G C ++R+    K    
Sbjct: 462 VTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFC-KMRMLNIAKGLFC 520

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            MR + + P    + +L+  LC  G L  A  + +EM     E D   ++++I    KAG
Sbjct: 521 EMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAG 580

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
                  +  +M E G +P+++T++ LI+   K  + + A + L+ M   G   + + Y+
Sbjct: 581 DFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYD 640

Query: 333 VILGGLCKDG 342
            +L GL   G
Sbjct: 641 SLLKGLSSKG 650



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 124/297 (41%), Gaps = 36/297 (12%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           + +++ Y+ ++  L      DE  ++ + +  ++  + P    F  +IG   +   L +A
Sbjct: 386 KADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKA 445

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
           +++  +M        +  +N LL   L  GK+    EL+ Q+++    P++ +Y+ILI G
Sbjct: 446 VKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDG 505

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI-------- 213
               R L  A  +F EM    L P L  + TL+  LC E  +++A  L +++        
Sbjct: 506 FCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPD 565

Query: 214 --------------------------MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
                                     M    ++PD   F++LI  L  +GEL  A    E
Sbjct: 566 IISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALE 625

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
            MV      DA +Y SL+  L   G   E   +L +M  +G   +    + +++  C
Sbjct: 626 RMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLC 682



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 1/179 (0%)

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + +  +A  +F   +   L P+  T   L+  L        A  +   +  V +V P   
Sbjct: 52  NSQFTEAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHV-DVLPSFG 110

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
             ++LI+      +  L  GV   +++    ++  I + ++  L + G   E   +++EM
Sbjct: 111 SLSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREM 170

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +   P+ V+YN LI+G CK +  + A  +L EM   GC  N ++   ++ GLCKDG+
Sbjct: 171 GRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGR 229


>gi|125580078|gb|EAZ21224.1| hypothetical protein OsJ_36877 [Oryza sativa Japonica Group]
          Length = 726

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 143/296 (48%), Gaps = 13/296 (4%)

Query: 61  KMFDEMQQILHQLK-HD-TRIVPKEII----------FCNVIGFYGRARLLERALQMFDE 108
           ++FDEM  +L   + HD  R V + +I          F  ++  Y RA  L  A+++   
Sbjct: 128 EVFDEMLSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHL 187

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRR 167
           M        +   N  +N  +  G++D+  E  + M +  V PD  +YN LI G   +RR
Sbjct: 188 MQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARR 247

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           + DA ++   M++    P  +++ T++  LC E RV+E   L + +     + PD   + 
Sbjct: 248 VVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYN 307

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            LI GL   G    AL    E    +  +D   YS+++ +    GR  E   I+ EM  +
Sbjct: 308 VLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISK 367

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           GC+P+ VTY+ ++ GFC+  + + A  ++  M    CK N +++  +L GLCK GK
Sbjct: 368 GCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGK 423



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 111/213 (52%), Gaps = 3/213 (1%)

Query: 133 KLDRMKELFQIMEKYVS--PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           +++ ++ L Q M       PD  +YN+LIHG       ++A +   E   +R +   V +
Sbjct: 282 RVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGY 341

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
             +++  CL  R+ EA ++  +++     +PD   +++++ G C +GEL  A  + + M 
Sbjct: 342 SAIVHSFCLNGRMAEAKEIVGEMIS-KGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMY 400

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
           ++  + +   +++L++ L K G+ +E   +L + +E    P+ +TY+ ++ GF +E   +
Sbjct: 401 KNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLK 460

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +  ++ +M  KG     +  N+++  LCKD K
Sbjct: 461 ESCDVVVQMLQKGFFPTTVEINLLIHALCKDRK 493



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 139/310 (44%), Gaps = 17/310 (5%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K FR + + Y  I+          E ++I+ ++       P  + +  V+  + R   L+
Sbjct: 332 KRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKG-CQPDVVTYSTVVDGFCRIGELD 390

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
           +A +M   M   + +        LLN     GK     EL  +  E++ +P   +Y++++
Sbjct: 391 QARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVM 450

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED------I 213
           HG     +L+++  V  +M+++   PT V    LI+ LC + +  EA    E        
Sbjct: 451 HGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQCQSKGCT 510

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           + V N       F ++I G    G+L  AL + ++M       D   Y+ ++ AL K GR
Sbjct: 511 INVVN-------FTTVIHGFSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALGKKGR 563

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   ++++M  RG  P  VTY  +I  +C++ + E    +L++M  +  +    +YN 
Sbjct: 564 LKEATGLVEKMLNRGVLPTPVTYRTVIHRYCEKGNLEDLLNLLEKMLAR--QEMKSAYNQ 621

Query: 334 ILGGLCKDGK 343
           ++  LC  GK
Sbjct: 622 VVEKLCAFGK 631


>gi|413942671|gb|AFW75320.1| hypothetical protein ZEAMMB73_530230 [Zea mays]
          Length = 542

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 136/267 (50%), Gaps = 6/267 (2%)

Query: 80  VPKEIIFCNVI--GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           +   ++ CN++  G  G   L   AL++ DEM  + +   V  + T+L      G L+  
Sbjct: 196 ITPNLVSCNILLKGLVGIGDL-NSALKVLDEMIGWGIVPDVVTYTTVLTAYCAKGDLEGA 254

Query: 138 KELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           ++LF  I+     PDA  Y +LI G    R+L+DA ++ DEM    +QP  VT+  +I  
Sbjct: 255 QQLFDDIIASGRRPDATMYTVLIDGYCHHRKLQDAARIMDEMGAAGVQPNEVTYSVVIEA 314

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
            C E +  EA  L  +++    V PD  + A ++  LC  G+   A  +  +MV+  +  
Sbjct: 315 CCKERKSTEARDLTREMLGAGYV-PDTPLCAKVVDVLCQDGKAGEANEMWRQMVKKSVPP 373

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           D  + S+LI  L K G   E   +  E+ ERG  P+ +TYN+LI G C+  + + A  + 
Sbjct: 374 DNTVVSTLIYWLCKKGMVQEARKLFDEL-ERGFLPSLLTYNSLIIGLCENGELQEAGRVW 432

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
           D+M ++  + N ++Y  ++ G CK GK
Sbjct: 433 DDMVERRYEPNAMTYEALIKGFCKIGK 459



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 123/281 (43%), Gaps = 38/281 (13%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRM 137
           IVP  + +  V+  Y     LE A Q+FD++ +   +     +  L++      KL D  
Sbjct: 231 IVPDVVTYTTVLTAYCAKGDLEGAQQLFDDIIASGRRPDATMYTVLIDGYCHHRKLQDAA 290

Query: 138 KELFQIMEKYVSPDACSYNILIHGCVVSRRLEDA-------------------WKVFD-- 176
           + + ++    V P+  +Y+++I  C   R+  +A                    KV D  
Sbjct: 291 RIMDEMGAAGVQPNEVTYSVVIEACCKERKSTEARDLTREMLGAGYVPDTPLCAKVVDVL 350

Query: 177 --------------EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
                         +MVK+ + P      TLIY LC +  V EA KL +++ R +   P 
Sbjct: 351 CQDGKAGEANEMWRQMVKKSVPPDNTVVSTLIYWLCKKGMVQEARKLFDELERGF--LPS 408

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + SLI GLC  GEL  A  V ++MV  + E +A  Y +LI    K G+ NE  A+ K
Sbjct: 409 LLTYNSLIIGLCENGELQEAGRVWDDMVERRYEPNAMTYEALIKGFCKIGKSNEGYALFK 468

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           EM  RGC P+   Y AL+    K    +   TI++    +G
Sbjct: 469 EMMSRGCTPSKFLYQALVDSLSKPSHDDTVCTIVEAAALRG 509



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 132/318 (41%), Gaps = 4/318 (1%)

Query: 30  PNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI-IFCN 88
           P    T   P++P+   L    L    LG A     +  + H L H    +P  + +F  
Sbjct: 40  PESGYTVTPPVQPWPRRLTARSLSRLLLGAATPELAVLALRHALFHAAHPLPPSLPVFAA 99

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV 148
            +     A     A  +   +S         F +    P L   +      LF  +  + 
Sbjct: 100 ALSRLSHADAGAAARHLPPVLSLLRASRLPAFSDRPFLPLLRALRPLPSLRLFLSLPSFN 159

Query: 149 S-PDACSYNILIHGCVVSRRLEDAWKVFDEM-VKRRLQPTLVTFGTLIYGLCLELRVDEA 206
           S P   S+N L+H  V +RRL  A  +F     K  + P LV+   L+ GL     ++ A
Sbjct: 160 SRPSTRSFNALLHSLVSARRLRLAAALFRAAPTKLYITPNLVSCNILLKGLVGIGDLNSA 219

Query: 207 LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266
           LK+ ++++  + + PD   + +++   CA G+L  A  + ++++      DA +Y+ LI 
Sbjct: 220 LKVLDEMIG-WGIVPDVVTYTTVLTAYCAKGDLEGAQQLFDDIIASGRRPDATMYTVLID 278

Query: 267 ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326
                 +  +   I+ EM   G +PN VTY+ +I   CKE     A  +  EM   G   
Sbjct: 279 GYCHHRKLQDAARIMDEMGAAGVQPNEVTYSVVIEACCKERKSTEARDLTREMLGAGYVP 338

Query: 327 NPISYNVILGGLCKDGKC 344
           +      ++  LC+DGK 
Sbjct: 339 DTPLCAKVVDVLCQDGKA 356


>gi|357146655|ref|XP_003574066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g13630-like [Brachypodium distachyon]
          Length = 795

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 144/265 (54%), Gaps = 8/265 (3%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL-NPKLTCGKLDRMKE 139
           P  I++  +   Y RA+++  AL +  +M+S N+Q++V  +++LL   ++T    D   E
Sbjct: 133 PSSIMWDALANSYARAQMIHDALYVLSKMNSLNMQISVSTYDSLLYGLRMT----DMALE 188

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK-RRLQPTLVTFGTLIYGL 197
           LF+ ME Y +S    S++I+I G     ++ +A     E  K  R +P  ++F  L+  L
Sbjct: 189 LFEEMEAYGISKSEYSHSIIIDGLCKQDKVGEALSFLQEARKGERFKPLGMSFNVLMSAL 248

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C    +  A K    +M  Y + PD   +++LI GLC +G L  A+ + E +  + ++++
Sbjct: 249 CNWGFIQPA-KSFLCLMLKYGLNPDRYTYSTLIHGLCKIGFLDEAVDLFERVTEEGMKLE 307

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+SLI+     G   E P I++ M+ +G +P+ VTY  LI+G C+  D E    I +
Sbjct: 308 TVTYNSLINGYRLLGLTREVPKIIQFMRYQGIEPDIVTYTILIAGHCESGDVEEGMKIRN 367

Query: 318 EMGDKGCKANPISYNVILGGLCKDG 342
           ++ D+G + N ++Y+V+L  L K G
Sbjct: 368 DILDQGLQLNIVTYSVLLNALFKKG 392



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 148/308 (48%), Gaps = 20/308 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQIL---HQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           N++ Y +++  L +  +  E + +L   H +  D  I+   I+    I  Y +   +ERA
Sbjct: 377 NIVTYSVLLNALFKKGLVHEAENLLGEIHSIGLDMDIIAYSIL----IHGYCKLGEIERA 432

Query: 103 LQMFDEM--SSFNVQMTVKFFNTLLNPKLTCGK---LDRMKELFQIMEKYVSPDACSYNI 157
           L++ D M  S   V  ++   + L+     C K   ++    L  +  KY   D   YN+
Sbjct: 433 LEVCDVMCCSQKVVPTSLNHLSILVG---LCKKGLLVEARWYLENVAVKYQPGDVVLYNV 489

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL--ELRVDEALKLKEDIMR 215
           +I G      + +A  ++D++V   + PT+VT  +++YG C   +L+  E+       ++
Sbjct: 490 VIDGYAKIGDISNAVGLYDQIVIAGMFPTIVTCNSILYGYCKCGDLQAAESYFRA---IQ 546

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
           + ++ P    + +L+  L   G+++  L +  EMV   I+ +A  YS +I  L K  R +
Sbjct: 547 ISSLLPTMVTYTTLMDALSEAGKVNTMLSILYEMVEKGIKPNAITYSVVIKGLCKELRFH 606

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +    L  M   G   + VTYN LI GFC+ +D + AF I D M   G    P++YN ++
Sbjct: 607 DAIHFLDNMHGEGVNADPVTYNTLIQGFCEVQDIQMAFHIHDRMVYCGIVPTPVTYNFLI 666

Query: 336 GGLCKDGK 343
             LC  G+
Sbjct: 667 NVLCLKGQ 674



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 123/262 (46%), Gaps = 3/262 (1%)

Query: 81  PKEIIFCNV-IGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P +++  NV I  Y +   +  A+ ++D++    +  T+   N++L     CG L   + 
Sbjct: 481 PGDVVLYNVVIDGYAKIGDISNAVGLYDQIVIAGMFPTIVTCNSILYGYCKCGDLQAAES 540

Query: 140 LFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            F+ ++   + P   +Y  L+     + ++     +  EMV++ ++P  +T+  +I GLC
Sbjct: 541 YFRAIQISSLLPTMVTYTTLMDALSEAGKVNTMLSILYEMVEKGIKPNAITYSVVIKGLC 600

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
            ELR  +A+   ++ M    V  D   + +LI+G C V ++ +A  + + MV   I    
Sbjct: 601 KELRFHDAIHFLDN-MHGEGVNADPVTYNTLIQGFCEVQDIQMAFHIHDRMVYCGIVPTP 659

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y+ LI+ L   G+  +   +L+ ++ERG +     Y  LI   C +     A ++  +
Sbjct: 660 VTYNFLINVLCLKGQVIQAEYLLESLRERGIELRKFAYTTLIKAECAKGMPYEAISLFGK 719

Query: 319 MGDKGCKANPISYNVILGGLCK 340
           + D G +     ++  +  LCK
Sbjct: 720 LLDDGFETTVKDFSAAINRLCK 741



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 132/332 (39%), Gaps = 71/332 (21%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    +  +I    +   L+ A+ +F+ ++   +++    +N+L+N     G    + ++
Sbjct: 271 PDRYTYSTLIHGLCKIGFLDEAVDLFERVTEEGMKLETVTYNSLINGYRLLGLTREVPKI 330

Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL------ 193
            Q M  + + PD  +Y ILI G   S  +E+  K+ ++++ + LQ  +VT+  L      
Sbjct: 331 IQFMRYQGIEPDIVTYTILIAGHCESGDVEEGMKIRNDILDQGLQLNIVTYSVLLNALFK 390

Query: 194 -----------------------------IYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
                                        I+G C    ++ AL++ + +     V P   
Sbjct: 391 KGLVHEAENLLGEIHSIGLDMDIIAYSILIHGYCKLGEIERALEVCDVMCCSQKVVPTSL 450

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
              S++ GLC  G L  A    E +       D  +Y+ +I    K G  +    +  ++
Sbjct: 451 NHLSILVGLCKKGLLVEARWYLENVAVKYQPGDVVLYNVVIDGYAKIGDISNAVGLYDQI 510

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAA-------------------------------- 312
              G  P  VT N+++ G+CK  D +AA                                
Sbjct: 511 VIAGMFPTIVTCNSILYGYCKCGDLQAAESYFRAIQISSLLPTMVTYTTLMDALSEAGKV 570

Query: 313 ---FTILDEMGDKGCKANPISYNVILGGLCKD 341
               +IL EM +KG K N I+Y+V++ GLCK+
Sbjct: 571 NTMLSILYEMVEKGIKPNAITYSVVIKGLCKE 602



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 116/259 (44%), Gaps = 3/259 (1%)

Query: 84  IIFCNVIGF-YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LF 141
           I+ CN I + Y +   L+ A   F  +   ++  T+  + TL++     GK++ M   L+
Sbjct: 519 IVTCNSILYGYCKCGDLQAAESYFRAIQISSLLPTMVTYTTLMDALSEAGKVNTMLSILY 578

Query: 142 QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
           +++EK + P+A +Y+++I G     R  DA    D M    +    VT+ TLI G C   
Sbjct: 579 EMVEKGIKPNAITYSVVIKGLCKELRFHDAIHFLDNMHGEGVNADPVTYNTLIQGFCEVQ 638

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
            +  A  +  D M    + P    +  LI  LC  G++  A  + E +    IE+    Y
Sbjct: 639 DIQMAFHI-HDRMVYCGIVPTPVTYNFLINVLCLKGQVIQAEYLLESLRERGIELRKFAY 697

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           ++LI A    G   E  ++  ++ + G +     ++A I+  CK +  + A   +  M  
Sbjct: 698 TTLIKAECAKGMPYEAISLFGKLLDDGFETTVKDFSAAINRLCKRKFAKEAVMFIPFMLS 757

Query: 322 KGCKANPISYNVILGGLCK 340
            G   +   Y V++  L K
Sbjct: 758 AGVFPDTQVYYVLVRALQK 776


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 146/306 (47%), Gaps = 4/306 (1%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           PLK  R N + Y  +I  L   +  DE   +  ++K D    P    +  +I     +  
Sbjct: 280 PLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDD-CYPTVRTYTVLIKALCGSER 338

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
              AL +  EM    ++  +  +  L++   +  KL++ +EL  Q++EK + P+  +YN 
Sbjct: 339 KSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNA 398

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G      +EDA  V + M  R L+P   T+  LI G C +  V +A+ +   ++   
Sbjct: 399 LINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYC-KRNVHKAMGVLNKMLE-R 456

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            V PD   + SLI G C  G    A  +   M    +  D   Y+S+I +L K+ R  E 
Sbjct: 457 KVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEA 516

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +   ++++   PN V Y ALI G+CK      A  +L++M  K C  N +++N ++ G
Sbjct: 517 CDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHG 576

Query: 338 LCKDGK 343
           LC DGK
Sbjct: 577 LCTDGK 582



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 123/237 (51%), Gaps = 2/237 (0%)

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVS 165
           DE      ++ +  +NTLLN     G +D MK+++ +++E  V P+  +YN +++G    
Sbjct: 172 DESFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKV 231

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             +E+A +    +V+  L P   T+ +LI G C    +D A K+ ++ M +   + +   
Sbjct: 232 GNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKE-MPLKGCRRNEVA 290

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           +  LI GLC    +  A+ +  +M  D        Y+ LI AL  + RK+E   ++KEM+
Sbjct: 291 YTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEME 350

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           E+G KPN  TY  LI   C +   E A  +L +M +KG   N I+YN ++ G CK G
Sbjct: 351 EKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 150/316 (47%), Gaps = 21/316 (6%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I    R+  FD   ++L  L +D  +VP    + ++I    +++ +E A  +
Sbjct: 461 DVVTYNSLIDGQCRSGNFDSAYRLL-SLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDL 519

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           FD +   +V   V  +  L++     GK++    + + ++ K   P++ ++N LIHG   
Sbjct: 520 FDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCT 579

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L++A  + ++MVK  LQPT+ T   LI+ L  +   D A +  + ++     KPD  
Sbjct: 580 DGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSS-GTKPDAH 638

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + + I+  C  G L  A  +  +M  + +  D   YSSLI      GR N    +LK M
Sbjct: 639 TYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRM 698

Query: 285 KERGCKPNSVTYNALIS---------------GFCKEE---DFEAAFTILDEMGDKGCKA 326
            + GC+P+  T+ +LI                G C      +F+    +L++M + G   
Sbjct: 699 HDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTP 758

Query: 327 NPISYNVILGGLCKDG 342
           N  SY  ++ G+C+ G
Sbjct: 759 NAKSYEKLMLGICEIG 774



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 145/293 (49%), Gaps = 4/293 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ +I    +  M ++   ++ +L     + P    +  +I  Y + R + +A+ +
Sbjct: 392 NVITYNALINGYCKRGMIEDALDVV-ELMESRNLRPNTRTYNELIKGYCK-RNVHKAMGV 449

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            ++M    V   V  +N+L++ +   G  D    L  +M ++ + PD  +Y  +I     
Sbjct: 450 LNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCK 509

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S+R+E+A  +FD + ++ + P +V +  LI G C   +V+EA  + E ++   N  P+  
Sbjct: 510 SKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLS-KNCLPNSL 568

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI GLC  G+L  A  ++E+MV+  ++      + LI  L K G  +      ++M
Sbjct: 569 TFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQM 628

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
              G KP++ TY   I  +C+E   + A  ++ +M + G   +  +Y+ ++ G
Sbjct: 629 LSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKG 681



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 150/310 (48%), Gaps = 5/310 (1%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           + E   +KP   N+  Y ++I  L      ++ +++L Q+  +  ++P  I +  +I  Y
Sbjct: 348 EMEEKGIKP---NIHTYTVLIDSLCSQCKLEKARELLGQML-EKGLMPNVITYNALINGY 403

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC 153
            +  ++E AL + + M S N++   + +N L+           M  L +++E+ V PD  
Sbjct: 404 CKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAMGVLNKMLERKVLPDVV 463

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN LI G   S   + A+++   M  R L P   T+ ++I  LC   RV+EA  L  D 
Sbjct: 464 TYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLF-DS 522

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           +   +V P+  ++ +LI G C  G+++ A  + E+M+      ++  +++LI  L   G+
Sbjct: 523 LEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGK 582

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   + ++M +   +P   T   LI    K+ DF+ A+    +M   G K +  +Y  
Sbjct: 583 LKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTT 642

Query: 334 ILGGLCKDGK 343
            +   C++G+
Sbjct: 643 FIQTYCREGR 652



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 1/189 (0%)

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YN L++       +++  +V+ EM++ ++ P + T+  ++ G C    V+EA +    I+
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIV 245

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
               + PD   + SLI G C   +L  A  V +EM       +   Y+ LI  L    R 
Sbjct: 246 EA-GLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRI 304

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +E   +  +MK+  C P   TY  LI   C  E    A  ++ EM +KG K N  +Y V+
Sbjct: 305 DEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVL 364

Query: 335 LGGLCKDGK 343
           +  LC   K
Sbjct: 365 IDSLCSQCK 373



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 115/299 (38%), Gaps = 66/299 (22%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
            + A + F +M S   +     + T +      G+L   +++   M E  VSPD  +Y+ 
Sbjct: 618 FDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSS 677

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY---------------GLCLE-- 200
           LI G     R   A+ V   M     +P+  TF +LI                G+C+   
Sbjct: 678 LIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSN 737

Query: 201 -LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
            +  D  ++L E ++  + V P+ + +  L+ G+C +G L +A     E V D ++   G
Sbjct: 738 MMEFDIVVELLEKMVE-HGVTPNAKSYEKLMLGICEIGNLRVA-----EKVFDHMQQKEG 791

Query: 260 IYSS-----------------------------------------LISALFKAGRKNEFP 278
           I  S                                         LI  L+K G K    
Sbjct: 792 ISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGT 851

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           ++ + + + G   + + +  +I G  K+   EA + + + M   GC  +  +Y++++ G
Sbjct: 852 SVFQNLLQCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQTYSLLIEG 910



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 112/263 (42%), Gaps = 29/263 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF-----YGRARLLE 100
           +L  Y  +I   G     +    +L ++ HDT   P +  F ++I       YG+ +  E
Sbjct: 671 DLFTYSSLIKGYGDLGRTNSAFVVLKRM-HDTGCEPSQHTFLSLIKHLLEMKYGKVKGGE 729

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIH 160
             + +   M  F++ + +                     L +++E  V+P+A SY  L+ 
Sbjct: 730 PGVCVMSNMMEFDIVVEL---------------------LEKMVEHGVTPNAKSYEKLML 768

Query: 161 GCVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           G      L  A KVFD M ++  + P+ + F  L+   C   + +EA K+ +D++ V ++
Sbjct: 769 GICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHL 828

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P  +    LI  L   GE      V + +++     D   +  +I  + K G    F  
Sbjct: 829 -PQLESCKILICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVEAFYE 887

Query: 280 ILKEMKERGCKPNSVTYNALISG 302
           +   M++ GC  +S TY+ LI G
Sbjct: 888 LFNVMEKNGCTFSSQTYSLLIEG 910


>gi|77557056|gb|ABA99852.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 726

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 143/296 (48%), Gaps = 13/296 (4%)

Query: 61  KMFDEMQQILHQLK-HD-TRIVPKEII----------FCNVIGFYGRARLLERALQMFDE 108
           ++FDEM  +L   + HD  R V + +I          F  ++  Y RA  L  A+++   
Sbjct: 128 EVFDEMLSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHL 187

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRR 167
           M        +   N  +N  +  G++D+  E  + M +  V PD  +YN LI G   +RR
Sbjct: 188 MQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARR 247

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           + DA ++   M++    P  +++ T++  LC E RV+E   L + +     + PD   + 
Sbjct: 248 VVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYN 307

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            LI GL   G    AL    E    +  +D   YS+++ +    GR  E   I+ EM  +
Sbjct: 308 VLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISK 367

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           GC+P+ VTY+ ++ GFC+  + + A  ++  M    CK N +++  +L GLCK GK
Sbjct: 368 GCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGK 423



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 111/213 (52%), Gaps = 3/213 (1%)

Query: 133 KLDRMKELFQIMEKYVS--PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           +++ ++ L Q M       PD  +YN+LIHG       ++A +   E   +R +   V +
Sbjct: 282 RVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGY 341

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
             +++  CL  R+ EA ++  +++     +PD   +++++ G C +GEL  A  + + M 
Sbjct: 342 SAIVHSFCLNGRMAEAKEIVGEMIS-KGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMY 400

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
           ++  + +   +++L++ L K G+ +E   +L + +E    P+ +TY+ ++ GF +E   +
Sbjct: 401 KNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLK 460

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +  ++ +M  KG     +  N+++  LCKD K
Sbjct: 461 ESCDVVVQMLQKGFFPTTVEINLLIHALCKDRK 493



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 139/310 (44%), Gaps = 17/310 (5%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K FR + + Y  I+          E ++I+ ++       P  + +  V+  + R   L+
Sbjct: 332 KRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKG-CQPDVVTYSTVVDGFCRIGELD 390

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
           +A +M   M   + +        LLN     GK     EL  +  E++ +P   +Y++++
Sbjct: 391 QARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVM 450

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED------I 213
           HG     +L+++  V  +M+++   PT V    LI+ LC + +  EA    E        
Sbjct: 451 HGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQCQSKGCT 510

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           + V N       F ++I G    G+L  AL + ++M       D   Y+ ++ AL K GR
Sbjct: 511 INVVN-------FTTVIHGFSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALGKKGR 563

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   ++++M  RG  P  VTY  +I  +C++ + E    +L++M  +  +    +YN 
Sbjct: 564 LKEATGLVEKMLNRGVLPTPVTYRTVIHRYCEKGNLEDLLNLLEKMLAR--QEMKSAYNQ 621

Query: 334 ILGGLCKDGK 343
           ++  LC  GK
Sbjct: 622 VVEKLCAFGK 631


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 160/347 (46%), Gaps = 51/347 (14%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI------GF 92
           PL   + N   Y ++I  L  AK   +   +   +K D    P    F  +I      G 
Sbjct: 245 PLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDG-CSPNVRAFTFLISGLCKSGR 303

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPD 151
            G ARLL      FD M    V  +V  +N ++      G+++   ++ ++MEK    PD
Sbjct: 304 VGDARLL------FDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPD 357

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +YN LI+G +  ++ E+A ++ +  VK    PT+VTF  LI G C+  + D+AL++K 
Sbjct: 358 DWTYNTLIYG-LCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKN 416

Query: 212 DIMRVYNVKPDGQVFA-----------------------------------SLIKGLCAV 236
            +M     K D QVF                                    S+I G C  
Sbjct: 417 KMMSS-KCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKS 475

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           G++ +AL V + M RD  + +A  Y+SL+  L K  + ++  A+L +M++ G  PN +TY
Sbjct: 476 GKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITY 535

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             L+ G C E DF+ AF + + M   G K +  +Y V+   LCK G+
Sbjct: 536 TTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGR 582



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 155/342 (45%), Gaps = 48/342 (14%)

Query: 38  HPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           HP   + YN L Y L   K       +E +++L+    +    P  + F N+I  Y  A 
Sbjct: 355 HP-DDWTYNTLIYGLCDQKT------EEAEELLNNAVKEG-FTPTVVTFTNLINGYCMAE 406

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT--------------------------- 130
             + AL+M ++M S   ++ ++ F  L+N  +                            
Sbjct: 407 KFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYT 466

Query: 131 --------CGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
                    GK+D   E+ ++ME+    P+A +YN L++G V  ++L  A  +  +M K 
Sbjct: 467 SIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKD 526

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
            + P ++T+ TL+ G C E   D A +L E +M    +KPD   +A L   LC  G    
Sbjct: 527 GIIPNVITYTTLLQGQCDEHDFDNAFRLFE-MMEQNGLKPDEHAYAVLTDALCKAGRAEE 585

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           A      +VR  + +    Y++LI    KAG  +    +++ M + GC P+S TY+ L+ 
Sbjct: 586 AYSF---IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLH 642

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             CK++    A  ILD+M  +G K    +Y +++  + ++GK
Sbjct: 643 ALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGK 684



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 136/312 (43%), Gaps = 19/312 (6%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           ++Y  +I    +A   D    ++ ++  D    P    +  ++    + + L  AL + D
Sbjct: 600 VYYTTLIDGFSKAGNTDFAATLIERMI-DEGCTPDSYTYSVLLHALCKQKRLNEALPILD 658

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSR 166
           +MS   ++ T+  +  L++  L  GK D  K ++  M      P A +Y + I+      
Sbjct: 659 QMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEG 718

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           RLEDA  +  +M +  + P +VT+  LI G      +D A    + ++   + +P+   +
Sbjct: 719 RLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGA-SCEPNYWTY 777

Query: 227 ASLIK----------------GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
             L+K                G+  + EL +   + E MV+  +      YSSLI+   K
Sbjct: 778 CLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCK 837

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
           AGR  E   +L  M  +G  PN   Y  LI   C  + FE A + +  M + G +    S
Sbjct: 838 AGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLES 897

Query: 331 YNVILGGLCKDG 342
           Y +++ GLC +G
Sbjct: 898 YRLLVVGLCNEG 909



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 118/260 (45%), Gaps = 18/260 (6%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
           + A +M++EM+S   + +   +   +N     G+L+  ++L   ME+  V+PD  +YNIL
Sbjct: 686 DHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNIL 745

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF---------GTLIY-------GLCLELR 202
           I GC     ++ A+     MV    +P   T+         G L Y       G+   + 
Sbjct: 746 IDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIE 805

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
           +D   +L E +++ + + P    ++SLI G C  G L  A  + + M    +  +  IY+
Sbjct: 806 LDITWQLLERMVK-HGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYT 864

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
            LI          +  + +  M E G +P   +Y  L+ G C E DFE   ++  ++ + 
Sbjct: 865 LLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLEL 924

Query: 323 GCKANPISYNVILGGLCKDG 342
           G   + +++ ++  GL K G
Sbjct: 925 GYNHDEVAWKILNDGLLKAG 944



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 136/323 (42%), Gaps = 18/323 (5%)

Query: 32  PNDTEAHPLKPFRYN---------LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK 82
           P+ T AH    FR +         L  ++ +  + G     D    +LH L         
Sbjct: 50  PSVTAAHVADLFRADSTAPEPATALAFFEWLARRDGFRHTADSHAALLHLLSRRRAPAQY 109

Query: 83  EIIFCNVIGFYGRA---RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           E +  +++     A   R+   A+Q      S  + ++ K +N  L         + M  
Sbjct: 110 ERLVVSMLNCSDTAEDMRVSADAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGR 169

Query: 140 LF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           ++ Q+++  + PD  +YN +I        L  A + F  +++  L+P   T   L+ G C
Sbjct: 170 VYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYC 229

Query: 199 L--ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
              ELR    L L   +M +   + +   +  LI+GLC    +  AL +   M RD    
Sbjct: 230 RTGELRKACWLFL---MMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSP 286

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +   ++ LIS L K+GR  +   +   M + G  P+ +TYNA+I G+ K      A  I 
Sbjct: 287 NVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIK 346

Query: 317 DEMGDKGCKANPISYNVILGGLC 339
           + M   GC  +  +YN ++ GLC
Sbjct: 347 ELMEKNGCHPDDWTYNTLIYGLC 369



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 1/171 (0%)

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
           +V+ ++V+  L P  VT+ T+I   C E  +  A +    ++    ++P+     +L+ G
Sbjct: 169 RVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEG-GLEPETFTCNALVLG 227

Query: 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
            C  GEL  A  +   M     + +   Y+ LI  L  A    +   +   MK  GC PN
Sbjct: 228 YCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPN 287

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              +  LISG CK      A  + D M   G   + ++YN ++ G  K G+
Sbjct: 288 VRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGR 338



 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 13/136 (9%)

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           +L   ++   +   D +V A  I+ +   G   LAL  K              Y+  + +
Sbjct: 111 RLVVSMLNCSDTAEDMRVSADAIQAIRRTGSARLALSPK-------------CYNFALRS 157

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L +         +  ++ + G  P++VTYN +I  +CKE D   A      + + G +  
Sbjct: 158 LARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPE 217

Query: 328 PISYNVILGGLCKDGK 343
             + N ++ G C+ G+
Sbjct: 218 TFTCNALVLGYCRTGE 233


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 108/193 (55%), Gaps = 1/193 (0%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PD  SYN +I+G    +RLE A  +  EM     +P   T+  L+ GLC E RV+EA++L
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
             ++ R   ++ D  V+++LI G C+ G L     + +EM+   I  +  +YS LI+   
Sbjct: 68  LGEMKR-KGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFC 126

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           K G   E  A+L  M ERG +P+  TY  +I G CK+     A  + D M +KG + + +
Sbjct: 127 KKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTV 186

Query: 330 SYNVILGGLCKDG 342
           +YNV++ GLCK+G
Sbjct: 187 TYNVLINGLCKEG 199



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 152/300 (50%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ II  L + K  ++   +L +++  +   P    +C ++    +   +E A+++
Sbjct: 9   DIVSYNTIINGLCKEKRLEKAVDLLVEME-GSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             EM    +++ V  ++TL++   + G LDR K LF +++EK +SP+   Y+ LI+G   
Sbjct: 68  LGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCK 127

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
                +A  V   M +R +QP + T+  +I GLC + R  +AL L  D+M     +P   
Sbjct: 128 KGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLF-DLMTEKGEEPSTV 186

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LI GLC  G +  A  + E M+     ++   Y++LI  L   G+ +E   +   +
Sbjct: 187 TYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSL 246

Query: 285 KERG--CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            E G   +P+ +T+N +I G CKE   + A  I D M ++G   N  + ++++G   K G
Sbjct: 247 LEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSG 306



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 2/236 (0%)

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRR 167
           M   N+   +  +NT++N      +L++  +L   ME     P++ +Y IL+ G     R
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           +E+A ++  EM ++ L+  +V + TLI G C +  +D    L ++++    + P+  V++
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLE-KGISPNVVVYS 119

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            LI G C  G    A  V   M    I+ D   Y+ +I  L K GR  +   +   M E+
Sbjct: 120 CLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEK 179

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G +P++VTYN LI+G CKE     AF I + M +KG +   +SYN ++ GLC +GK
Sbjct: 180 GEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGK 235



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 139/288 (48%), Gaps = 11/288 (3%)

Query: 57  LGRAK-MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ 115
           L R K +FDEM +          I P  +++  +I  + +  L   A  +   M+   +Q
Sbjct: 96  LDRGKALFDEMLE--------KGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQ 147

Query: 116 MTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKV 174
             V  +  ++      G+  +  +LF +M EK   P   +YN+LI+G      + DA+K+
Sbjct: 148 PDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKI 207

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN-VKPDGQVFASLIKGL 233
           F+ M+++  +  +V++ TLI GLC   ++DEA+KL   ++   N V+PD   F ++I+GL
Sbjct: 208 FETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGL 267

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           C  G L  A+ + + M+      +      LI    K+G  ++   + K + + G  P+S
Sbjct: 268 CKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSS 327

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            TY+ +I GFCK      A  +   M   G       YN ++  LCK+
Sbjct: 328 TTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKE 375



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 142/308 (46%), Gaps = 9/308 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV-PKEIIFCNVIGFYGRARLL 99
           K  R  ++ Y+ +I  L      DE  ++   L  D   V P  I F  VI    +   L
Sbjct: 214 KGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRL 273

Query: 100 ERALQMFDEM---SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSY 155
           ++A++++D M    SF    T    + L+   +  G +D+  EL++ + K  + P + +Y
Sbjct: 274 DKAVEIYDTMIERGSFGNLFTC---HILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTY 330

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           +++I G      L  A  +F  M    L PTL  + TL+  LC E  +++A +L ++ M+
Sbjct: 331 SVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQE-MK 389

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
             N +PD   F  +I G    G++  A  +  +M +  +  DA  YSS I+ L K G+  
Sbjct: 390 ESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQME 449

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E       M   G  P++  Y++LI GF   ++ E    +L +M D G   +    N IL
Sbjct: 450 EAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVILDLEITNSIL 509

Query: 336 GGLCKDGK 343
             LC   +
Sbjct: 510 TFLCNSAE 517



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 116/256 (45%), Gaps = 3/256 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL    ++I +  ++ + D+  ++  ++ H   +VP    +  +I  + +  +L  A  +
Sbjct: 291 NLFTCHILIGEYIKSGIIDKAMELWKRV-HKLGLVPSSTTYSVMIDGFCKMHMLNFAKGL 349

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F  M    +  T+  +NTL+        L++ + LFQ M E    PD  S+NI+I G + 
Sbjct: 350 FSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLK 409

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  +  A ++ ++M +  L P   T+ + I  L    +++EA K   D M    + PD  
Sbjct: 410 AGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEA-KGAFDSMIASGITPDNH 468

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           V+ SLIKG     E+   + +  +M    + +D  I +S+++ L  +        +L   
Sbjct: 469 VYDSLIKGFGLNDEIEEVINLLRQMADMGVILDLEITNSILTFLCNSAEHLHVMELLPNF 528

Query: 285 KERGCKPNSVTYNALI 300
                   S++ + L+
Sbjct: 529 SSESSGGTSISCDKLL 544


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 138/266 (51%), Gaps = 6/266 (2%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RM 137
           P  I + +++  Y +A  L+ AL +F ++    +  TV  +N L++     G L+   R+
Sbjct: 376 PDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRL 435

Query: 138 KELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           KE  +++E+   PD C+Y IL+ G   +  L  A + FDEM+ + LQP    + T I   
Sbjct: 436 KE--EMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAE 493

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
                + +A +L+E +M +  +  D   +  LI GLC  G L+ A  ++ +MV + ++ D
Sbjct: 494 LTLGAIAKAFRLRE-VMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPD 552

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+ LI A  + G   E     K+M   G  P++VTY   I  +C+  +  +A+    
Sbjct: 553 CITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFR 612

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
           +M ++G + N I+YNV++  LC+ G+
Sbjct: 613 KMLEEGVEPNEITYNVLIHALCRTGR 638



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 136/294 (46%), Gaps = 3/294 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            +L Y+++I    R    +E +++  ++  +   +P    +  ++     A  L  A + 
Sbjct: 412 TVLTYNILIDGYCRLGDLEEARRLKEEMV-EQGCLPDVCTYTILMKGSHNACSLAMAREF 470

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           FDEM S  +Q     +NT +  +LT G + +   L ++M  + +S D  +YNILI G   
Sbjct: 471 FDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCK 530

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  L DA  +  +MV   LQP  +T+  LI+  C    + EA K  +D++    + P   
Sbjct: 531 TGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISD-GLAPSAV 589

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +   I   C  G L  A G   +M+ + +E +   Y+ LI AL + GR         EM
Sbjct: 590 TYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEM 649

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            ERG  PN  TY  LI G CKE ++E A     EM   G   + +++  +  G 
Sbjct: 650 LERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKALFKGF 703



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 118/233 (50%), Gaps = 5/233 (2%)

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS---PDACSYNILIHGCVV 164
           EM    ++ ++  +NTLL+  L  G+ D++  L + ME   S   P+  ++N++I G   
Sbjct: 227 EMLQLGIEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLAR 286

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              LE+A ++ + M +   + +  T+  LI GL  +  V +A  L+ + M    + P   
Sbjct: 287 KGDLEEAAEMVEGM-RLSKKASSFTYNPLITGLLAKGFVKKADDLQLE-MENEGIMPTVV 344

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + ++I GL   G++  A     EM    ++ D   Y+SL++   KAG   E   +  ++
Sbjct: 345 TYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDL 404

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           +  G  P  +TYN LI G+C+  D E A  + +EM ++GC  +  +Y +++ G
Sbjct: 405 RHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKG 457



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 115/243 (47%), Gaps = 5/243 (2%)

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
           L  F EM+S  V   VK  N +L       + D +  +  ++++  + P   +YN L+  
Sbjct: 187 LSAFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDS 246

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQ--PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            +   R +    +  EM  R     P  VT   +I GL  +  ++EA ++ E  MR+ + 
Sbjct: 247 FLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEG-MRL-SK 304

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           K     +  LI GL A G +  A  ++ EM  + I      Y+++I  L ++G+      
Sbjct: 305 KASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQV 364

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
              EM+  G +P+ +TYN+L++G+CK    + A  +  ++   G     ++YN+++ G C
Sbjct: 365 KFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYC 424

Query: 340 KDG 342
           + G
Sbjct: 425 RLG 427



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 36/166 (21%)

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M  + V PD +    +++ L           V  EM++  IE     Y++L+ +  K GR
Sbjct: 193 MASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKEGR 252

Query: 274 KNEFPAILKEMKERG--CKPNSVT----------------------------------YN 297
            ++   +LKEM+ RG  C PN VT                                  YN
Sbjct: 253 NDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKASSFTYN 312

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            LI+G   +   + A  +  EM ++G     ++YN ++ GL + G+
Sbjct: 313 PLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQ 358


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 165/349 (47%), Gaps = 48/349 (13%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-IVPKEIIFCN-VIGFYGRARLLE 100
           F ++   Y +++  LGR    +  +  L  ++  +   V  E  FCN ++  YG A L  
Sbjct: 55  FAHDSRSYFMMLDILGRNGNLNIARNFLFSIERRSNGSVKIEDRFCNTLLRSYGNAGLFN 114

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM--EKYVSPDACSYNIL 158
            A+++F  M S  V  +V  FN+LL   L  G+ +    +F  M     V+PD  ++NIL
Sbjct: 115 EAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFNIL 174

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDIMRVY 217
           I G   +  +++ ++ F EM +   +P +VT+ TL+ GLC   +V  A   +K  + ++ 
Sbjct: 175 IRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMK 234

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR-----------------------DKI 254
           ++ PD   + +L++G C   E+  AL V EEMV                        DKI
Sbjct: 235 DLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKI 294

Query: 255 EM-------------DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           +              D   Y++L++A   AG  +E   + K+MKE   +P+S TY+ LI 
Sbjct: 295 KEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIR 354

Query: 302 GFCKEEDFEAAFTILDEMGDK-------GCKANPISYNVILGGLCKDGK 343
             C+  DFE A  + D++ D+       GC     +YN I   LCK+GK
Sbjct: 355 NLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGK 403



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 141/301 (46%), Gaps = 14/301 (4%)

Query: 52  LIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111
           LI+ K GR  M      +  ++     + P    F  +I  + +  +++   + F EMS 
Sbjct: 140 LILLKRGRTNM---AHSVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSR 196

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY---VSPDACSYNILIHGCVVSRRL 168
           FN +  V  +NTL++     GK+     + + M K    +SPD  +Y  L+ G  + + +
Sbjct: 197 FNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEI 256

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           ++A  VF+EMV R L+P  +T+ TLI GLC   + D+  ++    +      PD   + +
Sbjct: 257 DEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNT 316

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG---RKNEFPAILKE-- 283
           L+   C  G    AL + ++M   K++ D+  YS LI  L + G   R  +    L +  
Sbjct: 317 LMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDED 376

Query: 284 --MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             +++ GC P    YN +    CK      A  +  ++  KG + +P SY  ++ G CK+
Sbjct: 377 ILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKGTQ-DPPSYKTLIIGHCKE 435

Query: 342 G 342
           G
Sbjct: 436 G 436



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 136/319 (42%), Gaps = 24/319 (7%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           +  LKP   N + Y+ +I  L   + FD++++IL         VP    +  ++     A
Sbjct: 268 SRGLKP---NDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDA 324

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--------IMEKYV 148
              + AL+MF +M    VQ     ++ L+      G  +R ++LF         + +   
Sbjct: 325 GNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGC 384

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           +P   +YN +      + +   A +VF +++K+  Q    ++ TLI G C E   +   K
Sbjct: 385 TPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKGTQDP-PSYKTLIIGHCKEGTFEAGYK 443

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           L   ++R   V PD + +  LI G    GE  LA    E M++        ++ S++S L
Sbjct: 444 LLLFMLRRDYV-PDFETYVLLINGFLQKGEPILAYKTLERMLKSSYLPKTSVFHSILSEL 502

Query: 269 FKAGRKNEFPAILKEMKERGCKPN----SVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
            K     E  + +  M +R  + N    + T   L     + +    AF I++ + D G 
Sbjct: 503 LKNDFARESASFVVLMIDRKIRQNINLSTHTMRLLFGSGLRIK----AFQIVELLYDNGY 558

Query: 325 KANPISYNVILGGLCKDGK 343
               +    ++G +C++GK
Sbjct: 559 M---VDMEELIGFICQNGK 574


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 156/333 (46%), Gaps = 38/333 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + +  +I  LG+    D+   +  ++  D   VP  I++ ++I  + +    E   ++
Sbjct: 473 NAVTFSSLIDGLGKCGRVDDAYSLYEKML-DCGHVPGAIVYTSLIRSFFKCGRKEDGHKI 531

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG--- 161
           + EM        +   NT ++     G+ ++ + LF +I      PDA SY+ILIHG   
Sbjct: 532 YKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVK 591

Query: 162 ------------------CVV--------------SRRLEDAWKVFDEMVKRRLQPTLVT 189
                             CV+              S ++  A+++ +EM  +   PT+VT
Sbjct: 592 AGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVT 651

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           +G++I GL    R+DEA  L E+  +   +K +  V++SLI G   VG +  A  + EE+
Sbjct: 652 YGSVIDGLAKIDRLDEAYMLFEE-AKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEEL 710

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           ++  +  +   ++ L+ AL KA   NE     + MK+  C PN +TY+ LI+G C+   F
Sbjct: 711 MQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKF 770

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             AF    EM   G K N I+Y  ++ GL K G
Sbjct: 771 NKAFVFWQEMQKLGLKPNTITYTTMISGLAKAG 803



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 146/295 (49%), Gaps = 4/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I   G A  FDE   +L + K    I P  I +  ++   G+ R +E AL++F+EM
Sbjct: 338 YNTMIMGYGSAGKFDEAYGLLERQKAKGSI-PSVIAYNCILTCLGKKRRVEEALRIFEEM 396

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
               V   V  +N L++     GKL+   E+   ME+  + P+  + NI+I     +++L
Sbjct: 397 KRDAVP-NVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKL 455

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E+A  +F+ M  +   P  VTF +LI GL    RVD+A  L E ++   +V P   V+ S
Sbjct: 456 EEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHV-PGAIVYTS 514

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI+     G       + +EMV      D  + ++ +  +FKAG   +  A+ +E+   G
Sbjct: 515 LIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHG 574

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             P++ +Y+ LI G  K       + +   M ++GC  +  +YN ++ G CK GK
Sbjct: 575 FIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGK 629



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 148/311 (47%), Gaps = 12/311 (3%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           +  AH   P   +   Y ++I  L +A + +E  ++ + +K    ++     +  VI  +
Sbjct: 569 EINAHGFIP---DARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHA-YNAVIDGF 624

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP--- 150
            ++  + +A Q+ +EM       TV  + ++++      K+DR+ E + + E+  S    
Sbjct: 625 CKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVID---GLAKIDRLDEAYMLFEEAKSNGIK 681

Query: 151 -DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
            +   Y+ LI G     R+++A+ + +E++++ L P + T+  L+  L     ++EAL  
Sbjct: 682 LNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALIC 741

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            +  M+     P+   ++ LI GLC V + + A    +EM +  ++ +   Y+++IS L 
Sbjct: 742 FQS-MKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLA 800

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           KAG   E   +    K  G  P+S +YNA+I G         A+ + +E   KGC  +  
Sbjct: 801 KAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTK 860

Query: 330 SYNVILGGLCK 340
           +  V+L  L K
Sbjct: 861 TCVVLLDALHK 871



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 149/333 (44%), Gaps = 37/333 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ I+T LG+ +  +E  +I  ++K D   VP    +  +I    R   L  AL++
Sbjct: 369 SVIAYNCILTCLGKKRRVEEALRIFEEMKRDA--VPNVPTYNILIDMLCREGKLNAALEI 426

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            D+M    +   V   N +++      KL+    +F+ M+ K  +P+A +++ LI G   
Sbjct: 427 RDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGK 486

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV-------- 216
             R++DA+ ++++M+     P  + + +LI       R ++  K+ ++++          
Sbjct: 487 CGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTL 546

Query: 217 --------------------------YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
                                     +   PD + ++ LI GL   G  +    +   M 
Sbjct: 547 INTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMK 606

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
                +D   Y+++I    K+G+ N+   +L+EMK +G  P  VTY ++I G  K +  +
Sbjct: 607 EQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLD 666

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            A+ + +E    G K N + Y+ ++ G  K G+
Sbjct: 667 EAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGR 699



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 145/344 (42%), Gaps = 14/344 (4%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRA 60
           KP   + +  L RL KD   A+  F+               P  YN L     +  + R 
Sbjct: 89  KPLPELVIGVLKRL-KDANTAVNYFQWAEKQTEKVHC----PEAYNSL-----LMVMARN 138

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
             FD +++IL ++   +   P   I   ++    ++R L  A  +   M  F  +     
Sbjct: 139 TEFDHLERILEEMSL-SGFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSA 197

Query: 121 FNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +  L+       + D M  LF Q+ E     +   +  LI       R++ A  + DEM 
Sbjct: 198 YTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMK 257

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
              L   +V +   I       +VD + K   + M+ + + PD   + S+I  LC    L
Sbjct: 258 SNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHE-MKSHGLMPDDVTYTSMIGVLCKANRL 316

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A+ + E++ +++    A  Y+++I     AG+ +E   +L+  K +G  P+ + YN +
Sbjct: 317 DEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCI 376

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           ++   K+   E A  I +EM        P +YN+++  LC++GK
Sbjct: 377 LTCLGKKRRVEEALRIFEEMKRDAVPNVP-TYNILIDMLCREGK 419


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 152/304 (50%), Gaps = 4/304 (1%)

Query: 41  KPFRYNLLHYDLII-TKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           K F  +++ ++++I T  G+ K+ D   ++  +L  D    P  I +  +I  Y     +
Sbjct: 73  KGFSPDVVTHNIMIGTFCGKGKI-DLALKVFEELLKDNNCKPTLITYTILIEAYILEGGI 131

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           + AL++ DEM S  ++     +N +       GK+DR  E  + +  +   PD  +YNIL
Sbjct: 132 DEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNIL 191

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           +   +   + ++  K   E+  R  +P +VT+  LI  LC + +++E++ L + +M+   
Sbjct: 192 LRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVK-VMKEKG 250

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   +  LI   C  G+L +A+   + M+ D    D   Y+++++AL K G  +   
Sbjct: 251 LTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAV 310

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            I  ++ E GC PN  +YN ++S      D   A  ++ +M  KG   + I+YN ++  L
Sbjct: 311 EIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCL 370

Query: 339 CKDG 342
           C+DG
Sbjct: 371 CRDG 374



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 119/231 (51%), Gaps = 4/231 (1%)

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAW 172
           +V +  K      N +     +D+   +  I+EK+  PD  +YN +I G   + R+E A 
Sbjct: 9   DVILCTKLIKGFFNSR----NIDKATRVMGILEKHGKPDVFAYNAVISGFCKANRIESAK 64

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
            V D M ++   P +VT   +I   C + ++D ALK+ E++++  N KP    +  LI+ 
Sbjct: 65  TVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEA 124

Query: 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
               G +  AL + +EM+   +E D   Y+ +   L K G+ +     ++ +  RGCKP+
Sbjct: 125 YILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPD 184

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +TYN L+     +  ++     + E+  +GC+ N ++Y++++  LC+DGK
Sbjct: 185 VITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGK 235



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 135/285 (47%), Gaps = 5/285 (1%)

Query: 60  AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK 119
           ++  D+  +++  L+   +  P    +  VI  + +A  +E A  + D M        V 
Sbjct: 23  SRNIDKATRVMGILEKHGK--PDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVV 80

Query: 120 FFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
             N ++      GK+D   ++F+  + +    P   +Y ILI   ++   +++A K+ DE
Sbjct: 81  THNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDE 140

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M+ R L+P   T+  +  GLC E +VD A +     +     KPD   +  L++ L   G
Sbjct: 141 MLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVR-TLNSRGCKPDVITYNILLRALLNQG 199

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           +         E+     E +   YS LIS+L + G+  E   ++K MKE+G  P++  Y+
Sbjct: 200 KWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYD 259

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            LI+ FC+E   + A   LD M   G   + ++YN I+  LCK+G
Sbjct: 260 PLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNG 304



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 113/211 (53%), Gaps = 8/211 (3%)

Query: 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK-RRLQPTLVTFGT 192
           LDRMK       K  SPD  ++NI+I       +++ A KVF+E++K    +PTL+T+  
Sbjct: 67  LDRMKR------KGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTI 120

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           LI    LE  +DEALKL ++++    ++PD   +  + +GLC  G++  A      +   
Sbjct: 121 LIEAYILEGGIDEALKLLDEMLS-RGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSR 179

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
             + D   Y+ L+ AL   G+ +E    + E+  RGC+PN VTY+ LIS  C++   E +
Sbjct: 180 GCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEES 239

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             ++  M +KG   +   Y+ ++   C++GK
Sbjct: 240 VNLVKVMKEKGLTPDAYCYDPLIAAFCREGK 270



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 118/241 (48%), Gaps = 2/241 (0%)

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGC 162
           +   E+ S   +  V  ++ L++     GK++    L ++M EK ++PDA  Y+ LI   
Sbjct: 206 KWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAF 265

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
               +L+ A +  D M+     P +V + T++  LC     D A+++   +  V    P+
Sbjct: 266 CREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEV-GCPPN 324

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + +++  L + G+   ALG+  +M+   I+ D   Y+SLIS L + G  +E   +L 
Sbjct: 325 VSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLA 384

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +M     +PN V+Y  ++ G CK    + A  +L  M + GC+ N  +Y +++ G+   G
Sbjct: 385 DMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSG 444

Query: 343 K 343
            
Sbjct: 445 S 445



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 78/181 (43%), Gaps = 2/181 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  ++++Y+ I+  L +    D   +I  +L  +    P    +  ++     +    RA
Sbjct: 286 FLPDIVNYNTIMAALCKNGNGDHAVEIFGKL-DEVGCPPNVSSYNTMLSALWSSGDRYRA 344

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
           L M  +M S  +   V  +N+L++     G +D    L   ++     P+  SY  ++ G
Sbjct: 345 LGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLG 404

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              + R++DA +V   M++   QP   T+  LI G+       +A++L   +  +  +  
Sbjct: 405 LCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQAMELANSLYIMNAISE 464

Query: 222 D 222
           D
Sbjct: 465 D 465


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 146/303 (48%), Gaps = 7/303 (2%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           PL+ F  +++ Y  +I  L  A   DE  ++  ++       P   ++  ++     A  
Sbjct: 215 PLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQ-----PDMHMYAALVKGLCNAER 269

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
            E  L M   M     + + + +  +++ +    K    +E+ Q M EK ++P   +   
Sbjct: 270 GEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTA 329

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I+      R+ DA +V + M  R  +P + T+  L+ G C E +V +A+ L    MR  
Sbjct: 330 VINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNK-MRAC 388

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            V PD   +  LI+G C  G +  A  +   M  D +  D   Y++LI+AL K GR ++ 
Sbjct: 389 GVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQA 448

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            ++   ++ RG KPN+VT+N+LI+G CK    + A+  L++M   GC  +  +Y+  +  
Sbjct: 449 CSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEH 508

Query: 338 LCK 340
           LCK
Sbjct: 509 LCK 511



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 140/294 (47%), Gaps = 42/294 (14%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQM-TVKFFNTLLNPKLTCGKLDRMKELFQIM 144
           F +++    R  L   AL++F  M        T   +N ++        L R      +M
Sbjct: 120 FASLLAHLSRFALAPLALRLFAHMHRHAPPAPTAPTYNAVIRSLCRRADLARALRYLSLM 179

Query: 145 EKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
            +    PDA ++N LI G   + +++ A  +FD+M  R     +V++ TLI GLC   R+
Sbjct: 180 VRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRI 239

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV--GELSL-------ALGVK-------- 246
           DEA++L  ++      +PD  ++A+L+KGLC    GE  L        LG +        
Sbjct: 240 DEAVELFGEM-----DQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAA 294

Query: 247 --------------EEMVRDKIEMDAG----IYSSLISALFKAGRKNEFPAILKEMKERG 288
                         EEM+++  E          +++I+A  K GR ++   +L+ MK RG
Sbjct: 295 VVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRG 354

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           CKPN  TYNAL+ GFC E     A T+L++M   G   + ++YN+++ G C DG
Sbjct: 355 CKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDG 408



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 135/302 (44%), Gaps = 3/302 (0%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           +R +   Y  ++    R +   E +++L ++  +  + P  +    VI  Y +   +  A
Sbjct: 285 WRPSTRAYAAVVDFRCRERKAKEAEEMLQEM-FEKGLAPCVVTCTAVINAYCKEGRMSDA 343

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
           L++ + M     +  V  +N L+      GK+ +   L   M    V+PDA +YN+LI G
Sbjct: 344 LRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRG 403

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
             +   +E A+++   M    L     T+  LI  LC + R D+A  L  D +    +KP
Sbjct: 404 QCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLF-DSLETRGIKP 462

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   F SLI GLC  G+  +A    E+MV      D   YSS I  L K     E  + +
Sbjct: 463 NAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFI 522

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM ++  KP++V Y  +I    KE ++        EM   GC  + ++Y   +   C +
Sbjct: 523 GEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIE 582

Query: 342 GK 343
           G+
Sbjct: 583 GR 584



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 167/379 (44%), Gaps = 53/379 (13%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKL-GR 59
           +P +S+ LA L R    P LAL+LF + + +       P          Y+ +I  L  R
Sbjct: 118 RPFASL-LAHLSRFALAP-LALRLFAHMHRHAPPAPTAPT---------YNAVIRSLCRR 166

Query: 60  AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK 119
           A +   ++ +   ++   R  P    F ++I  Y R   ++ A  +FD+M        V 
Sbjct: 167 ADLARALRYLSLMVRSGWR--PDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVV 224

Query: 120 FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDA-------- 171
            + TL+      G++D   ELF  M++   PD   Y  L+ G   + R E+         
Sbjct: 225 SYATLIEGLCEAGRIDEAVELFGEMDQ---PDMHMYAALVKGLCNAERGEEGLLMLRRMK 281

Query: 172 ---WK------------------------VFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
              W+                        +  EM ++ L P +VT   +I   C E R+ 
Sbjct: 282 ELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMS 341

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           +AL++ E +M++   KP+   + +L++G C  G++  A+ +  +M    +  DA  Y+ L
Sbjct: 342 DALRVLE-LMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLL 400

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           I      G       +L+ M+  G   +  TYNALI+  CK+   + A ++ D +  +G 
Sbjct: 401 IRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGI 460

Query: 325 KANPISYNVILGGLCKDGK 343
           K N +++N ++ GLCK GK
Sbjct: 461 KPNAVTFNSLINGLCKSGK 479



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 106/243 (43%), Gaps = 2/243 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           +E A ++   M    +      +N L+N     G+ D+   LF  +E + + P+A ++N 
Sbjct: 410 IESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNS 469

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G   S + + AWK  ++MV     P   T+ + I  LC      E L    ++++  
Sbjct: 470 LINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQ-K 528

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           +VKP    +  +I  L       L      EMV      D   Y++ + A    GR NE 
Sbjct: 529 DVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEA 588

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +L EM + G   +++ YN L+ G       + A +IL +M       N  +Y ++L  
Sbjct: 589 ENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRH 648

Query: 338 LCK 340
           L +
Sbjct: 649 LVR 651



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/350 (20%), Positives = 143/350 (40%), Gaps = 61/350 (17%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTR-IVPKEIIFCNVIGFYGRARLLERALQMFDE 108
           Y+ +I  L +    D+   +   L  +TR I P  + F ++I    ++   + A +  ++
Sbjct: 432 YNALINALCKDGRTDQACSLFDSL--ETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEK 489

Query: 109 MSSFNVQMTVKFFNTLLNPKLTC---GKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
           M S         +++ +  +  C   G  + +  + ++++K V P   +Y I+IH  +  
Sbjct: 490 MVSAGCTPDTYTYSSFI--EHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKE 547

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
           R      + + EMV     P +VT+ T +   C+E R++EA  +  + M    V  D   
Sbjct: 548 RNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLME-MSKNGVTVDTMA 606

Query: 226 FASLIKGLCAVGELSLALGVKEEM-----------------------------------V 250
           + +L+ G  ++G+   A+ + ++M                                   V
Sbjct: 607 YNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGV 666

Query: 251 RDKIEM-----------------DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
              IE+                 ++G YSS++    + GR  E  +++  MKE     N 
Sbjct: 667 WKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNE 726

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             Y AL++ FCK + +  A+ ++  M   G     +SY  +L GL  +G+
Sbjct: 727 DIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQ 776



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 7/138 (5%)

Query: 213 IMRVYNVKPD------GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM-DAGIYSSLI 265
           ++R++++ P        + FASL+  L       LAL +   M R       A  Y+++I
Sbjct: 101 VLRLHSLSPPPLRPLFDRPFASLLAHLSRFALAPLALRLFAHMHRHAPPAPTAPTYNAVI 160

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
            +L +          L  M   G +P++ T+N+LI G+C+    + A  + D+M  +G  
Sbjct: 161 RSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFA 220

Query: 326 ANPISYNVILGGLCKDGK 343
            + +SY  ++ GLC+ G+
Sbjct: 221 QDVVSYATLIEGLCEAGR 238



 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 105/257 (40%), Gaps = 39/257 (15%)

Query: 3   TSSIRLACLP-RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAK 61
           T+S+R  C+  RL +   + +++ KN                  + + Y+ ++       
Sbjct: 573 TTSMRAYCIEGRLNEAENVLMEMSKNG--------------VTVDTMAYNTLMDGHASIG 618

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE-----------RALQMFDEMS 110
             D    IL Q+      VP +  +  ++    R RL+E           +A+++ D   
Sbjct: 619 QTDHAVSILKQMT-SVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFG 677

Query: 111 SFNVQMTVKF------FNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
            F+V    +F      ++++L      G+ +    L  +M E  +S +   Y  L+    
Sbjct: 678 LFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFC 737

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM--RVYNVKP 221
            S+R  DAW +   M++    P L+++  L+ GL  E + D+A   KE  M  R  +  P
Sbjct: 738 KSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKA---KEIFMNSRWKDYSP 794

Query: 222 DGQVFASLIKGLCAVGE 238
           D  V+  +I GL   G 
Sbjct: 795 DEIVWKVIIDGLIKKGH 811


>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
 gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
          Length = 573

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 154/306 (50%), Gaps = 9/306 (2%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           +R +    + ++  L RA   D + +   +     R+ P +  F  VI    +   L +A
Sbjct: 149 YRPSAFSVNALLAALVRADRVD-LAERAFRAALRRRVSPDKFTFNIVISGLCKTGQLRKA 207

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE----LFQIMEKYVSPDACSYNIL 158
             +  +M  + +  +V  +NTL++     G+  +M      L ++ +  +SP+  ++N+L
Sbjct: 208 GDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEMNQAGISPNVVTFNVL 267

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV-Y 217
           I+G      +  A KVF+EM +  +   +VT+ +L+ GLC E +V++++KL E++  +  
Sbjct: 268 INGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGKVEDSMKLVEEMEELGL 327

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
              P      S++ G C  G +  A G  + M +  ++ +   Y++LI    + G+  E 
Sbjct: 328 ATLP---TLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGYQRLGKMKEA 384

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            A    M  +G  P+  TYN LI+GF    D+ +   +LDEM + G KA+ ++YNV++G 
Sbjct: 385 TAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLLDEMKETGVKADLVTYNVLIGA 444

Query: 338 LCKDGK 343
           LC  G+
Sbjct: 445 LCCKGE 450



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 143/301 (47%), Gaps = 5/301 (1%)

Query: 46  NLLHYDLIIT---KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           +++ Y+ +I    K GRA     +  +L ++ +   I P  + F  +I  Y +   +  A
Sbjct: 222 SVVTYNTLIDGYYKWGRAGKMYHVDMLLKEM-NQAGISPNVVTFNVLINGYCKESNITAA 280

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGC 162
           +++F+EM    +   +  + +L++     GK++   +L + ME+       + N +++G 
Sbjct: 281 IKVFEEMRQHGIPANMVTYTSLVSGLCREGKVEDSMKLVEEMEELGLATLPTLNSVLNGF 340

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
                + +A    D M ++ ++P +VT+ TLI G     ++ EA   K   M    + PD
Sbjct: 341 CKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGYQRLGKMKEATAAK-GAMAGKGISPD 399

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
            + +  LI G     +     G+ +EM    ++ D   Y+ LI AL   G   +   +L 
Sbjct: 400 VKTYNCLITGFTTSTDWRSVSGLLDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLD 459

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           EM E G +P   TYNA+I+GFC++ D + A  I   M     +AN ++ NV L   CK G
Sbjct: 460 EMVEVGLEPKHRTYNAIINGFCEKGDAKGAHDIRIRMEKCKKRANVVTCNVFLKYFCKMG 519

Query: 343 K 343
           K
Sbjct: 520 K 520



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 4/165 (2%)

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
           R +P+  +   L+  L    RVD   +          V PD   F  +I GLC  G+L  
Sbjct: 148 RYRPSAFSVNALLAALVRADRVD-LAERAFRAALRRRVSPDKFTFNIVISGLCKTGQLRK 206

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF---PAILKEMKERGCKPNSVTYNA 298
           A  V ++M    +      Y++LI   +K GR  +      +LKEM + G  PN VT+N 
Sbjct: 207 AGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEMNQAGISPNVVTFNV 266

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           LI+G+CKE +  AA  + +EM   G  AN ++Y  ++ GLC++GK
Sbjct: 267 LINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGK 311



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 130/283 (45%), Gaps = 11/283 (3%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           K+F+EM+Q  H +  +       + + +++    R   +E ++++ +EM    +  T+  
Sbjct: 282 KVFEEMRQ--HGIPANM------VTYTSLVSGLCREGKVEDSMKLVEEMEELGLA-TLPT 332

Query: 121 FNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
            N++LN     G +   +     M +K + P+  +YN LI G     ++++A      M 
Sbjct: 333 LNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGYQRLGKMKEATAAKGAMA 392

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
            + + P + T+  LI G            L ++ M+   VK D   +  LI  LC  GE+
Sbjct: 393 GKGISPDVKTYNCLITGFTTSTDWRSVSGLLDE-MKETGVKADLVTYNVLIGALCCKGEV 451

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A+ + +EMV   +E     Y+++I+   + G       I   M++   + N VT N  
Sbjct: 452 RKAVKLLDEMVEVGLEPKHRTYNAIINGFCEKGDAKGAHDIRIRMEKCKKRANVVTCNVF 511

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +  FCK    + A  +L+EM +KG   N I+Y +I  G+ + G
Sbjct: 512 LKYFCKMGKMDEANVVLNEMLEKGLVPNRITYEIINSGMIEKG 554


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 150/294 (51%), Gaps = 3/294 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y+ +I  L     + E   +L+++     I+P  + F  +I  + +   +  A  +
Sbjct: 296 NIFTYNSLIQGLCNFSRWREASAMLNEMM-SLNIMPNIVTFSLLINIFCKEGNVFEARGV 354

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
              M+   V+  V  +++L+N      ++   ++LF +M  K   PD  SYNILI+G   
Sbjct: 355 LKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCK 414

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           ++R+ +A ++F+EM+ + L P +V++ TLI GLC   R+ EA  L ++++   N+ PD  
Sbjct: 415 AKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNL-PDLC 473

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++ L+ G C  G L+ A  +   M    ++ +  +Y+ LI A+ K+    E   +  E+
Sbjct: 474 TYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSEL 533

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             +G +PN   Y  +I+G CKE   + A      M + GC  N  SYNVI+ G 
Sbjct: 534 FVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGF 587



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 119/228 (52%), Gaps = 2/228 (0%)

Query: 114 VQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAW 172
           +Q+T+  FNTL+N     GK  +  ELF  M  +   PD  +Y  +I+G         A 
Sbjct: 188 LQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAA 247

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
            +F +M +   QP +VT+ T+I  LC + RV+EAL +    M+   + P+   + SLI+G
Sbjct: 248 GLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFS-YMKAKGISPNIFTYNSLIQG 306

Query: 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
           LC       A  +  EM+   I  +   +S LI+   K G   E   +LK M E G +PN
Sbjct: 307 LCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPN 366

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            VTY++L++G+  + +   A  + D M  KGCK +  SYN+++ G CK
Sbjct: 367 VVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCK 414



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 124/244 (50%), Gaps = 2/244 (0%)

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
           +A+++FD+M +   Q  V  + T++N     G+      LF+ M E    PD  +Y+ +I
Sbjct: 210 QAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTII 269

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
                 RR+ +A  +F  M  + + P + T+ +LI GLC   R  EA  +  ++M + N+
Sbjct: 270 DSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSL-NI 328

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   F+ LI   C  G +  A GV + M    +E +   YSSL++         E   
Sbjct: 329 MPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARK 388

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +   M  +GCKP+  +YN LI+G+CK +    A  + +EM  +G   + +SYN ++ GLC
Sbjct: 389 LFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLC 448

Query: 340 KDGK 343
           + G+
Sbjct: 449 QLGR 452



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 129/248 (52%), Gaps = 3/248 (1%)

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIME-KYVSPDACS 154
           R ++ AL  F+ M     +  +  FN LL+  +      D +  L + ME   +SPD  +
Sbjct: 100 RNIDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYT 159

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
            ++LI+     +R++  + V  +++K  LQ T+VTF TLI GLC   +  +A++L +D M
Sbjct: 160 LHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDD-M 218

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
                +PD   + ++I GLC +GE   A G+  +M     + D   YS++I +L K  R 
Sbjct: 219 VARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRV 278

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           NE   I   MK +G  PN  TYN+LI G C    +  A  +L+EM       N ++++++
Sbjct: 279 NEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLL 338

Query: 335 LGGLCKDG 342
           +   CK+G
Sbjct: 339 INIFCKEG 346



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 144/299 (48%), Gaps = 5/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           +++ Y  II  L + +  +E   I   +K    I P    + ++I G    +R  E A  
Sbjct: 261 DVVTYSTIIDSLCKDRRVNEALDIFSYMKAKG-ISPNIFTYNSLIQGLCNFSRWRE-ASA 318

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
           M +EM S N+   +  F+ L+N     G +   + + + M E  V P+  +Y+ L++G  
Sbjct: 319 MLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYS 378

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
           +   + +A K+FD M+ +  +P + ++  LI G C   R+ EA +L  +++    + PD 
Sbjct: 379 LQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIH-QGLTPDI 437

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +LI GLC +G L  A  + + M+ +    D   YS L+    K G   +   + + 
Sbjct: 438 VSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRA 497

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           M+    KPN V YN LI   CK  + + A  +  E+  +G + N   Y  I+ GLCK+G
Sbjct: 498 MQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEG 556



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 120/261 (45%), Gaps = 2/261 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  +I    + R +  AL +F  M +  +   +  +N+L+       +      +
Sbjct: 260 PDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAM 319

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
             ++M   + P+  ++++LI+       + +A  V   M +  ++P +VT+ +L+ G  L
Sbjct: 320 LNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSL 379

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  V EA KL  D+M     KPD   +  LI G C    +  A  +  EM+   +  D  
Sbjct: 380 QAEVVEARKLF-DVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIV 438

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI  L + GR  E   + K M   G  P+  TY+ L+ GFCK+     AF +   M
Sbjct: 439 SYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAM 498

Query: 320 GDKGCKANPISYNVILGGLCK 340
                K N + YN+++  +CK
Sbjct: 499 QSTYLKPNMVMYNILIDAMCK 519



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 35/178 (19%)

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
           R ++DA   F+ M+ R+ +P ++ F  L+  +       +A+      M +  + PD   
Sbjct: 100 RNIDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYT 159

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
                                                 LI+  F+  R +   ++L ++ 
Sbjct: 160 L-----------------------------------HMLINCFFQLQRVDLGFSVLAKII 184

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + G +   VT+N LI+G CK   F  A  + D+M  +G + +  +Y  I+ GLCK G+
Sbjct: 185 KLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGE 242


>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 547

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 163/345 (47%), Gaps = 14/345 (4%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRA 60
           K + S+ +  L RL     +AL  F         T A   K F+YN   Y+ +I  LG+ 
Sbjct: 120 KVSPSLVVEVLKRLSNAGVIALSFF---------TWAEKQKGFKYNTESYNALIEALGKI 170

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           K F  ++ +++++K  +R +  +  F  +   + RAR +E A++ F+ M  F  ++    
Sbjct: 171 KQFKLIRSLVNEMK--SRKLLNKDTFALISRRHARARKVEEAIEAFERMEEFGFKLETSD 228

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           FN LL+       +++  ++F  M+K    PD  SY IL+ G      L    +V+ EM 
Sbjct: 229 FNRLLDTLCKSRHVEKANKVFDKMKKRRFVPDIKSYTILLEGWGKEHNLLRLDEVYLEMK 288

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
               +P +VT+G LI   C   + D A++L  + M   N KP   V+ +LI GL +   L
Sbjct: 289 YDGFEPDVVTYGILISAYCKAKKYDAAIELFHE-MEAKNCKPTPHVYCTLINGLGSEKRL 347

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
           S AL   E         +A  Y+SL+ A   + R ++   ++ EM++    PNS TY+ +
Sbjct: 348 SEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQVIDEMRKHSAGPNSRTYDII 407

Query: 300 ISGFCKEEDFEAAFTILDEMGDK-GCKANPISYNVILGGLCKDGK 343
           +    K      A+    +M ++ GC+    +Y +I+   C + +
Sbjct: 408 LHHLIKARRTNEAYFRFQKMSNEPGCEPTVSTYEIIVRMFCNEDR 452



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 120/261 (45%), Gaps = 8/261 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y +++   G+      + ++  ++K+D    P  + +  +I  Y +A+  + A+++F EM
Sbjct: 264 YTILLEGWGKEHNLLRLDEVYLEMKYDG-FEPDVVTYGILISAYCKAKKYDAAIELFHEM 322

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHGCVVS 165
            + N + T   + TL+N     G   R+ E  +  E++ S    P+A +YN L+     S
Sbjct: 323 EAKNCKPTPHVYCTLIN---GLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWS 379

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            R++DA++V DEM K    P   T+  +++ L    R +EA    + +      +P    
Sbjct: 380 MRIDDAFQVIDEMRKHSAGPNSRTYDIILHHLIKARRTNEAYFRFQKMSNEPGCEPTVST 439

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           +  +++  C    + LA  V ++M    +     +YS LI++L    +  E     +EM 
Sbjct: 440 YEIIVRMFCNEDRVDLAKQVWDQMKAKGVLPGMHMYSDLITSLCHKNKLGEACKYFQEML 499

Query: 286 ERGCKPNSVTYNALISGFCKE 306
           + G +P +  ++ L      E
Sbjct: 500 DAGIRPPAKMFSNLKQALLDE 520


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 148/298 (49%), Gaps = 36/298 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           + + +++++  L RAK  +    +L +L+ D   +P  + + +VI  Y +A  +E AL +
Sbjct: 252 DTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSV 311

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
           +++M                                  +E    P+  +YN+LI+G   +
Sbjct: 312 YNDM----------------------------------LESGTRPNTVTYNVLINGYGKA 337

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             +E A +++ +++ RR  P +VTF +LI G C   ++D+A+++ ++ M  ++++P+   
Sbjct: 338 LDMESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKE-MGQHHIQPNVYT 396

Query: 226 FASLIKGLCAVGELSLALGVKEEM-VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           F+ +I  LC     + ALG   E+ +R  I     IY+ +I  L K G+  E   I+ +M
Sbjct: 397 FSIIIHSLCKQNRSAEALGFLRELNMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDM 456

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +E+GC P+  TY  LI G C +     A T+  +M + GC+ + I+ N  +  + K G
Sbjct: 457 EEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVETGCRPDKITVNSFISCVLKAG 514



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 136/296 (45%), Gaps = 2/296 (0%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +IT L R+    +  ++  Q+   +  +P  + F  V G    A LL+ A+ +  + 
Sbjct: 114 YSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAAVTLLTKA 173

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDACSYNILIHGCVVSRR 167
           S F  ++    +N LLN  +  G+      LF+  I +   SPD  S+N++I G      
Sbjct: 174 SQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKGVCRVGN 233

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
            + A ++ + M +    P  +T   L+ GLC   +V+    L   + R     P+   + 
Sbjct: 234 FQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYT 293

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           S+I G C  G +  AL V  +M+      +   Y+ LI+   KA        + +++  R
Sbjct: 294 SVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILR 353

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            C P+ VT+++LI G+C+    + A  I  EMG    + N  ++++I+  LCK  +
Sbjct: 354 RCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNR 409



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 150/307 (48%), Gaps = 9/307 (2%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           ++P+ YN L  +L+I + GRA+   +   +      D    P    F  VI    R    
Sbjct: 180 IEPYAYNNL-LNLLIAR-GRAQ---DAVALFESWIQDGLYSPDGWSFNVVIKGVCRVGNF 234

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYNI 157
           ++AL++ + M+ F         N L++      +++R  +L + +++     P+  +Y  
Sbjct: 235 QKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTS 294

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I G   + R+EDA  V+++M++   +P  VT+  LI G    L ++ A+++   ++ + 
Sbjct: 295 VISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLI-LR 353

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
              PD   F+SLI G C  G+L  A+ + +EM +  I+ +   +S +I +L K  R  E 
Sbjct: 354 RCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEA 413

Query: 278 PAILKEMKERG-CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              L+E+  R    P +  YN +I   CK    E A  I+ +M +KGC  +  +Y +++ 
Sbjct: 414 LGFLRELNMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILII 473

Query: 337 GLCKDGK 343
           G C  G+
Sbjct: 474 GHCMKGR 480



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 134/271 (49%), Gaps = 9/271 (3%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQM-TVKFFNTLLNPKLTCGKLDRM 137
           + P E  + +VI    R+     AL++FD+M+  +  +    FF+ +       G LD  
Sbjct: 107 VPPSEQSYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAA 166

Query: 138 KELFQIMEKY---VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL-QPTLVTFGTL 193
             L     ++   + P A  YN L++  +   R +DA  +F+  ++  L  P   +F  +
Sbjct: 167 VTLLTKASQFGRRIEPYA--YNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVV 224

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G+C      +AL+L E  M  +   PD      L+ GLC   +++    +   + RD 
Sbjct: 225 IKGVCRVGNFQKALELVER-MTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDG 283

Query: 254 IEM-DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
           + M +   Y+S+IS   KAGR  +  ++  +M E G +PN+VTYN LI+G+ K  D E+A
Sbjct: 284 VCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESA 343

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +  ++  + C  + ++++ ++ G C+ G+
Sbjct: 344 VRMYRQLILRRCPPDVVTFSSLIDGYCRCGQ 374


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 137/292 (46%), Gaps = 14/292 (4%)

Query: 56  KLGRAK----MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111
           KLG A      FDEM         D  + P  + + ++I  Y       +A ++++EM++
Sbjct: 274 KLGNASAAKYYFDEMI--------DKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTA 325

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLED 170
             +      F  +++       +     LF ++ E+ + P   +YN++I G   S  + +
Sbjct: 326 KGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISE 385

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           A+ + DEMV +   P   T+  LI GLC   RV EA +  +D+ + ++ K +   +++L+
Sbjct: 386 AFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHH-KLNNMCYSALV 444

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
            G C  G    A+     MV   + MD   Y+ LI    +         +LKEM   G +
Sbjct: 445 HGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLR 504

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           P++V Y  +I    K  + + AF + D M D+GC  N ++Y  ++ GLCK G
Sbjct: 505 PDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAG 556



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 133/271 (49%), Gaps = 13/271 (4%)

Query: 72  QLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131
           +L  D  ++P+      ++    R R     L +FD++ S NVQ  +  ++ ++      
Sbjct: 85  RLMKDCNLMPEVRTLSALLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCEL 144

Query: 132 GKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
              ++ KE+   ME          YN+LIHG   SRR+ +A ++ + ++++ L+  +VT+
Sbjct: 145 KDFNKAKEMIHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTY 204

Query: 191 GTLIYGLCLELRVDEA-LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
               YG     + +EA L  KE  M    +  +   ++ LI   C  GE+  A+G  ++M
Sbjct: 205 ----YG-----KFNEAELLFKE--MGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKM 253

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
            +  IE     Y+SLI+   K G  +       EM ++G  P  VTY +LISG+C E ++
Sbjct: 254 TKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEW 313

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             AF + +EM  KG   N  ++  I+ GLC+
Sbjct: 314 HKAFKVYNEMTAKGISPNTYTFTAIISGLCR 344



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 142/297 (47%), Gaps = 16/297 (5%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYG--RARLLERALQMFD 107
           Y  ++  L   K F++ ++++H ++ +       I+  NV+  +G  ++R +  AL++ +
Sbjct: 134 YSAVVRSLCELKDFNKAKEMIHWMEFNQ--CKLSIVVYNVL-IHGLCKSRRIWEALEIKN 190

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSR 166
            +    ++  V  +          GK +  + LF+ M EK +  +  +Y+ILI       
Sbjct: 191 CLMQKGLEANVVTYY---------GKFNEAELLFKEMGEKGLCANHITYSILIDSFCRRG 241

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
            +++A    D+M K  ++ T+  + +LI G C +L    A K   D M    + P    +
Sbjct: 242 EMDNAIGFLDKMTKASIEFTVYPYNSLINGYC-KLGNASAAKYYFDEMIDKGLTPTVVTY 300

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
            SLI G C  GE   A  V  EM    I  +   ++++IS L +A    E   +  EMKE
Sbjct: 301 TSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKE 360

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           R   P+ VTYN +I G C+  +   AF +LDEM  KG   +  +Y  ++ GLC  G+
Sbjct: 361 RKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGR 417



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 119/257 (46%), Gaps = 5/257 (1%)

Query: 88  NVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK- 146
           NV+ +YG+      A  +F EM    +      ++ L++     G++D        M K 
Sbjct: 200 NVVTYYGK---FNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKA 256

Query: 147 YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA 206
            +      YN LI+G         A   FDEM+ + L PT+VT+ +LI G C E    +A
Sbjct: 257 SIEFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKA 316

Query: 207 LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266
            K+  + M    + P+   F ++I GLC    ++ A+ +  EM   KI      Y+ +I 
Sbjct: 317 FKVYNE-MTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIE 375

Query: 267 ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326
              ++G  +E   +L EM  +G  P++ TY  LISG C       A   +D++     K 
Sbjct: 376 GHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKL 435

Query: 327 NPISYNVILGGLCKDGK 343
           N + Y+ ++ G CK+G+
Sbjct: 436 NNMCYSALVHGYCKEGR 452



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 2/194 (1%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PDA  Y  +I     +  L++A+ ++D MV     P +VT+  LI GLC    +D+A  L
Sbjct: 505 PDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAELL 564

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            ++ + V +V P+   +   +  L   G +  A+ +   M++  +      Y+ LI    
Sbjct: 565 SKETL-VSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLKGFLATTVS-YNILIRGFC 622

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           + G+  E   +L  M +    P+ +TY+ +I   CK  + + A  +   M DKG K + +
Sbjct: 623 RLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTL 682

Query: 330 SYNVILGGLCKDGK 343
           +Y+ ++ G C  G+
Sbjct: 683 AYSFLVHGCCIAGE 696



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 116/249 (46%), Gaps = 5/249 (2%)

Query: 85  IFCNVIGFYGRARLLE-RAL-QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ 142
           + C  I   G AR  + RAL  +  EM +  ++     +  +++     G L     L+ 
Sbjct: 472 LVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWD 531

Query: 143 IM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
           IM ++   P+  +Y  LI+G   +  ++ A  +  E +   + P  +T+G  +  L    
Sbjct: 532 IMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGG 591

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
            +++A++L   +++ +        +  LI+G C +G++  A  +   M  + I  D   Y
Sbjct: 592 NMEKAVQLHHAMLKGFLATTVS--YNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITY 649

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           S++I    K     E   +   M ++G KP+++ Y+ L+ G C   + E AF + DEM  
Sbjct: 650 STIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFELRDEMIR 709

Query: 322 KGCKANPIS 330
           +G ++N ++
Sbjct: 710 RGMRSNHVT 718



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 101/241 (41%), Gaps = 37/241 (15%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y ++I    R      +  +L ++ H+  + P  +I+ N+I  + +A  L+ A  +
Sbjct: 471 DLVCYAILIDGTAREHDTRALFGLLKEM-HNHGLRPDAVIYTNMIDRHSKAGNLKEAFGL 529

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK--------------------------- 138
           +D M        V  +  L+N     G +D+ +                           
Sbjct: 530 WDIMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTR 589

Query: 139 --------ELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
                   +L   M K       SYNILI G     ++E+A K+   M    + P  +T+
Sbjct: 590 GGNMEKAVQLHHAMLKGFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITY 649

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
            T+IY  C    + EA+KL   ++    +KPD   ++ L+ G C  GEL  A  +++EM+
Sbjct: 650 STIIYEQCKRSNLQEAIKLWHTMLDK-GLKPDTLAYSFLVHGCCIAGELEKAFELRDEMI 708

Query: 251 R 251
           R
Sbjct: 709 R 709


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 159/341 (46%), Gaps = 39/341 (11%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           PL   + N   Y ++I  L  AK   +   +   +K D    P    F  +I    ++  
Sbjct: 130 PLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDG-CSPNVRAFTFLISGLCKSGR 188

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           +  A  +FD M    V  +V  +N ++      G+++   ++ ++MEK    PD  +YN 
Sbjct: 189 VGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNT 248

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G +  ++ E+A ++ +  VK    PT+VTF  LI G C+  + D+AL++K  +M   
Sbjct: 249 LIYG-LCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSS- 306

Query: 218 NVKPDGQVFA-----------------------------------SLIKGLCAVGELSLA 242
             K D QVF                                    S+I G C  G++ +A
Sbjct: 307 KCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIA 366

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
           L V + M RD  + +A  Y+SL+  L K  + ++  A+L +M++ G  PN +TY  L+ G
Sbjct: 367 LEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQG 426

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            C E DF+ AF + + M   G K +  +Y V+   LCK G+
Sbjct: 427 QCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGR 467



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 155/342 (45%), Gaps = 48/342 (14%)

Query: 38  HPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           HP   + YN L Y L   K       +E +++L+    +    P  + F N+I  Y  A 
Sbjct: 240 HP-DDWTYNTLIYGLCDQKT------EEAEELLNNAVKEG-FTPTVVTFTNLINGYCMAE 291

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT--------------------------- 130
             + AL+M ++M S   ++ ++ F  L+N  +                            
Sbjct: 292 KFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYT 351

Query: 131 --------CGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
                    GK+D   E+ ++ME+    P+A +YN L++G V  ++L  A  +  +M K 
Sbjct: 352 SIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKD 411

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
            + P ++T+ TL+ G C E   D A +L E +M    +KPD   +A L   LC  G    
Sbjct: 412 GIIPNVITYTTLLQGQCDEHDFDNAFRLFE-MMEQNGLKPDEHAYAVLTDALCKAGRAEE 470

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           A      +VR  + +    Y++LI    KAG  +    +++ M + GC P+S TY+ L+ 
Sbjct: 471 AYSF---IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLH 527

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             CK++    A  ILD+M  +G K    +Y +++  + ++GK
Sbjct: 528 ALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGK 569



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 136/312 (43%), Gaps = 19/312 (6%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           ++Y  +I    +A   D    ++ ++  D    P    +  ++    + + L  AL + D
Sbjct: 485 VYYTTLIDGFSKAGNTDFAATLIERMI-DEGCTPDSYTYSVLLHALCKQKRLNEALPILD 543

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSR 166
           +MS   ++ T+  +  L++  L  GK D  K ++  M      P A +Y + I+      
Sbjct: 544 QMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEG 603

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           RLEDA  +  +M +  + P +VT+  LI G      +D A    + ++   + +P+   +
Sbjct: 604 RLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGA-SCEPNYWTY 662

Query: 227 ASLIK----------------GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
             L+K                G+  + EL +   + E MV+  +      YSSLI+   K
Sbjct: 663 CLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCK 722

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
           AGR  E   +L  M  +G  PN   Y  LI   C  + FE A + +  M + G +    S
Sbjct: 723 AGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLES 782

Query: 331 YNVILGGLCKDG 342
           Y +++ GLC +G
Sbjct: 783 YRLLVVGLCNEG 794



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 118/260 (45%), Gaps = 18/260 (6%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
           + A +M++EM+S   + +   +   +N     G+L+  ++L   ME+  V+PD  +YNIL
Sbjct: 571 DHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNIL 630

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF---------GTLIY-------GLCLELR 202
           I GC     ++ A+     MV    +P   T+         G L Y       G+   + 
Sbjct: 631 IDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIE 690

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
           +D   +L E +++ + + P    ++SLI G C  G L  A  + + M    +  +  IY+
Sbjct: 691 LDITWQLLERMVK-HGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYT 749

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
            LI          +  + +  M E G +P   +Y  L+ G C E DFE   ++  ++ + 
Sbjct: 750 LLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLEL 809

Query: 323 GCKANPISYNVILGGLCKDG 342
           G   + +++ ++  GL K G
Sbjct: 810 GYNHDEVAWKILNDGLLKAG 829



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 6/246 (2%)

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSY 155
           R+   A+Q      S  + ++ K +N  L         + M  ++ Q+++  + PD  +Y
Sbjct: 12  RVSADAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTY 71

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL--ELRVDEALKLKEDI 213
           N +I        L  A + F  +++  L+P   T   L+ G C   ELR    L L   +
Sbjct: 72  NTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFL---M 128

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M +   + +   +  LI+GLC    +  AL +   M RD    +   ++ LIS L K+GR
Sbjct: 129 MPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGR 188

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             +   +   M + G  P+ +TYNA+I G+ K      A  I + M   GC  +  +YN 
Sbjct: 189 VGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNT 248

Query: 334 ILGGLC 339
           ++ GLC
Sbjct: 249 LIYGLC 254



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 1/171 (0%)

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
           +V+ ++V+  L P  VT+ T+I   C E  +  A +    ++    ++P+     +L+ G
Sbjct: 54  RVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEG-GLEPETFTCNALVLG 112

Query: 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
            C  GEL  A  +   M     + +   Y+ LI  L  A    +   +   MK  GC PN
Sbjct: 113 YCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPN 172

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              +  LISG CK      A  + D M   G   + ++YN ++ G  K G+
Sbjct: 173 VRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGR 223



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 13/131 (9%)

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           ++   +   D +V A  I+ +   G   LAL  K              Y+  + +L +  
Sbjct: 1   MLNCSDTAEDMRVSADAIQAIRRTGSARLALSPK-------------CYNFALRSLARFD 47

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
                  +  ++ + G  P++VTYN +I  +CKE D   A      + + G +    + N
Sbjct: 48  MTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCN 107

Query: 333 VILGGLCKDGK 343
            ++ G C+ G+
Sbjct: 108 ALVLGYCRTGE 118


>gi|15236834|ref|NP_194398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186944|ref|NP_001190849.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213515|sp|Q9SZ10.1|PP338_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g26680, mitochondrial; Flags: Precursor
 gi|4455191|emb|CAB36514.1| putative protein [Arabidopsis thaliana]
 gi|7269520|emb|CAB79523.1| putative protein [Arabidopsis thaliana]
 gi|332659836|gb|AEE85236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332659837|gb|AEE85237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 521

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 144/296 (48%), Gaps = 9/296 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERALQMFD 107
           +D +       K F        Q+K D   +P  +  CN       G+ R+ + AL+ + 
Sbjct: 171 FDSLFKTFAHLKKFRNATDTFMQMK-DYGFLP-TVESCNAYMSSLLGQGRV-DIALRFYR 227

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYNILIHGCVVS 165
           EM    +       N +++     GKLD+  EL Q ME+  + + D  SYN LI G    
Sbjct: 228 EMRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDV-SYNTLIAGHCEK 286

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             L  A K+ + M K  LQP +VTF TLI+G C  +++ EA K+  + M+  NV P+   
Sbjct: 287 GLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGE-MKAVNVAPNTVT 345

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + +LI G    G+  +A    E+MV + I+ D   Y++LI  L K  +  +    +KE+ 
Sbjct: 346 YNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELD 405

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           +    PNS T++ALI G C  ++ +  F +   M   GC  N  ++N+++   C++
Sbjct: 406 KENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRN 461



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 151/340 (44%), Gaps = 41/340 (12%)

Query: 11  LPRLQKDPKLALQLF---KNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQ 67
           L ++QKD  L+L+ F   K  NP  +  E H +                           
Sbjct: 88  LLKIQKDYLLSLEFFNWAKTRNPGSHSLETHAI--------------------------- 120

Query: 68  QILHQLKHDTRIVPKEIIFCNVI---GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124
            +LH L  + +    E I  +V+   G    A++ +  L  + E  S     T + F++L
Sbjct: 121 -VLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSYRECDS-----TPRVFDSL 174

Query: 125 LNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
                   K     + F  M+ Y   P   S N  +   +   R++ A + + EM + ++
Sbjct: 175 FKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKI 234

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P   T   ++ G C   ++D+ ++L +D+ R+   +     + +LI G C  G LS AL
Sbjct: 235 SPNPYTLNMVMSGYCRSGKLDKGIELLQDMERL-GFRATDVSYNTLIAGHCEKGLLSSAL 293

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            +K  M +  ++ +   +++LI    +A +  E   +  EMK     PN+VTYN LI+G+
Sbjct: 294 KLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGY 353

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ++ D E AF   ++M   G + + ++YN ++ GLCK  K
Sbjct: 354 SQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAK 393



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 37/262 (14%)

Query: 83  EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ 142
           ++ +  +I  +    LL  AL++ + M    +Q  V  FNTL++      KL    ++F 
Sbjct: 273 DVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFG 332

Query: 143 IMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
            M+   V+P+  +YN LI+G       E A++ +++MV   +Q  ++T+  LI+GLC + 
Sbjct: 333 EMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQA 392

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
           +  +A +  +++ +  N+ P+   F++LI G C               VR   +    +Y
Sbjct: 393 KTRKAAQFVKELDK-ENLVPNSSTFSALIMGQC---------------VRKNADRGFELY 436

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
            S+I +                    GC PN  T+N L+S FC+ EDF+ A  +L EM  
Sbjct: 437 KSMIRS--------------------GCHPNEQTFNMLVSAFCRNEDFDGASQVLREMVR 476

Query: 322 KGCKANPISYNVILGGLCKDGK 343
           +    +  + + +  GL   GK
Sbjct: 477 RSIPLDSRTVHQVCNGLKHQGK 498


>gi|224111048|ref|XP_002315730.1| predicted protein [Populus trichocarpa]
 gi|222864770|gb|EEF01901.1| predicted protein [Populus trichocarpa]
          Length = 760

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 160/315 (50%), Gaps = 14/315 (4%)

Query: 38  HPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN 88
           H L+ FR+     L+ +D      II  LGR  M +  + I+ +          E +F  
Sbjct: 130 HALQFFRWVERAGLIQHDRETHMKIIQILGRYSMLNHARCIVLEDMPKKGFELDEDMFVL 189

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKY 147
           +I  YG+A +++ +++MF +M    V+ +VK +N L    +  G+    K  F +++++ 
Sbjct: 190 LIDSYGKAGIVQESVKMFSKMKELGVERSVKSYNALFKVIVRKGRYMMAKRFFNKMLDEG 249

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +YN+LI G  +S RL  A + +++M  R + P +VT+ T+I G     R++EA 
Sbjct: 250 IGPTRHTYNVLIWGFFLSMRLRTAVRFYEDMKVRGISPDVVTYNTMINGYYRHKRMEEAE 309

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           KL  + M+  ++ P    + ++IKG  AV  ++  L + EEM    I+ +   Y++L+  
Sbjct: 310 KLFAE-MKAKDIAPTVISYTTMIKGYFAVDRINDGLRLLEEMKSVGIKPNNVTYTTLLPD 368

Query: 268 LFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
           L  AG+  E   ILKEM  R   P  NS+ +  L++  CK  D +AA  +LD M      
Sbjct: 369 LCDAGKMTEAKDILKEMVRRRIAPKDNSI-FLKLLNSQCKAGDLKAAVDVLDGMIKLSIP 427

Query: 326 ANPISYNVILGGLCK 340
           +    Y V++   CK
Sbjct: 428 SEAGHYGVLIENFCK 442



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 126/263 (47%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   RL   A++ +++M    +   V  +NT++N      +++  ++LF  M+ K 
Sbjct: 261 IWGFFLSMRL-RTAVRFYEDMKVRGISPDVVTYNTMINGYYRHKRMEEAEKLFAEMKAKD 319

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           ++P   SY  +I G     R+ D  ++ +EM    ++P  VT+ TL+  LC   ++ EA 
Sbjct: 320 IAPTVISYTTMIKGYFAVDRINDGLRLLEEMKSVGIKPNNVTYTTLLPDLCDAGKMTEAK 379

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + ++++R      D  +F  L+   C  G+L  A+ V + M++  I  +AG Y  LI  
Sbjct: 380 DILKEMVRRRIAPKDNSIFLKLLNSQCKAGDLKAAVDVLDGMIKLSIPSEAGHYGVLIEN 439

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             KA   ++    + ++ E     +P S        YN +I   C       A  +  ++
Sbjct: 440 FCKAEEYDQAVKFVDKLIENDIILRPQSTLEMESGAYNPVIQYLCSHGQTGKAEILFRQL 499

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
             KG + +P+++N ++ G  K+G
Sbjct: 500 LKKGVE-DPLAFNNLICGHAKEG 521



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 139/308 (45%), Gaps = 11/308 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I    R K  +E +++  ++K    I P  I +  +I  Y     +   L++
Sbjct: 288 DVVTYNTMINGYYRHKRMEEAEKLFAEMKAKD-IAPTVISYTTMIKGYFAVDRINDGLRL 346

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSP-DACSYNILIHGCV 163
            +EM S  ++     + TLL      GK+   K++  +++ + ++P D   +  L++   
Sbjct: 347 LEEMKSVGIKPNNVTYTTLLPDLCDAGKMTEAKDILKEMVRRRIAPKDNSIFLKLLNSQC 406

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR-------V 216
            +  L+ A  V D M+K  +      +G LI   C     D+A+K  + ++         
Sbjct: 407 KAGDLKAAVDVLDGMIKLSIPSEAGHYGVLIENFCKAEEYDQAVKFVDKLIENDIILRPQ 466

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             ++ +   +  +I+ LC+ G+   A  +  ++++  +E D   +++LI    K G  + 
Sbjct: 467 STLEMESGAYNPVIQYLCSHGQTGKAEILFRQLLKKGVE-DPLAFNNLICGHAKEGTPDS 525

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              ILK M  +G   ++  Y  LI  + ++ +   A T LD M + G   +   +  ++ 
Sbjct: 526 AFEILKIMGRKGIPRDADAYRLLIESYLRKGEPADAKTALDSMIEDGHLPDSSVFRSVME 585

Query: 337 GLCKDGKC 344
            L +DG+ 
Sbjct: 586 SLYEDGRV 593



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 71/344 (20%), Positives = 137/344 (39%), Gaps = 51/344 (14%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE-IIFCNVIGFYGRARLLERALQ 104
           N + Y  ++  L  A    E + IL ++    RI PK+  IF  ++    +A  L+ A+ 
Sbjct: 358 NNVTYTTLLPDLCDAGKMTEAKDILKEMVR-RRIAPKDNSIFLKLLNSQCKAGDLKAAVD 416

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPD------------A 152
           + D M   ++      +  L+       K +   +  + ++K +  D            +
Sbjct: 417 VLDGMIKLSIPSEAGHYGVLIE---NFCKAEEYDQAVKFVDKLIENDIILRPQSTLEMES 473

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN +I       +   A  +F +++K+ ++  L  F  LI G   E   D A ++ + 
Sbjct: 474 GAYNPVIQYLCSHGQTGKAEILFRQLLKKGVEDPL-AFNNLICGHAKEGTPDSAFEILK- 531

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           IM    +  D   +  LI+     GE + A    + M+ D    D+ ++ S++ +L++ G
Sbjct: 532 IMGRKGIPRDADAYRLLIESYLRKGEPADAKTALDSMIEDGHLPDSSVFRSVMESLYEDG 591

Query: 273 RKNEFPAILKEMKERGCKPN--------------------------------SVTYNALI 300
           R      ++K M E+G K N                                +V +++L+
Sbjct: 592 RVQTASRVMKSMVEKGVKENMDLVAKILEALLMRGHEEEALGRIDLLMSSQCNVNFDSLL 651

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
           S   ++    AA  +LD    + C  +  SY+ +L  L   GK 
Sbjct: 652 SILSEKGKTIAALKLLDFGLQRDCDIDFKSYDKVLDALLAAGKT 695



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/302 (20%), Positives = 135/302 (44%), Gaps = 13/302 (4%)

Query: 49  HYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEII------FCNVIGFYGRARLLER 101
           HY ++I    +A+ +D+  + + +L ++D  + P+  +      +  VI +        +
Sbjct: 432 HYGVLIENFCKAEEYDQAVKFVDKLIENDIILRPQSTLEMESGAYNPVIQYLCSHGQTGK 491

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIH 160
           A  +F ++    V+  + F N L+      G  D   E+ +IM  K +  DA +Y +LI 
Sbjct: 492 AEILFRQLLKKGVEDPLAF-NNLICGHAKEGTPDSAFEILKIMGRKGIPRDADAYRLLIE 550

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
             +      DA    D M++    P    F +++  L  + RV  A ++ + ++    VK
Sbjct: 551 SYLRKGEPADAKTALDSMIEDGHLPDSSVFRSVMESLYEDGRVQTASRVMKSMVE-KGVK 609

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
            +  + A +++ L   G    ALG  + ++  +  ++   + SL+S L + G+      +
Sbjct: 610 ENMDLVAKILEALLMRGHEEEALGRIDLLMSSQCNVN---FDSLLSILSEKGKTIAALKL 666

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L    +R C  +  +Y+ ++           A++IL ++ +KG   +  SY  ++  L +
Sbjct: 667 LDFGLQRDCDIDFKSYDKVLDALLAAGKTLNAYSILCKIMEKGGVTSWRSYEDLIKSLNQ 726

Query: 341 DG 342
           +G
Sbjct: 727 EG 728


>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 418

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 131/244 (53%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y R   L+   ++ + M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 169 PTAVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANEL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++  + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 289 KGDLKQAQDLIDE-MSMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP   TY  +I+ FCK+ D      ++ EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEM 407

Query: 320 GDKG 323
              G
Sbjct: 408 QRDG 411



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 126/228 (55%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G++   + +F  + K+ + P A S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E ++D A +L  +++    + P+G  F +LI G C 
Sbjct: 195 NAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLD-NGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ VT
Sbjct: 254 NGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGR 361



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 134/264 (50%), Gaps = 3/264 (1%)

Query: 81  PKEIIFCNVIGF-YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F N++   + +   ++ A  +FD ++ + ++ T   FNTL+N  +  G LD    
Sbjct: 133 PASLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFR 192

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L   M+   V PD  +Y++LI+G     +++ A ++F+EM+   L P  VTF TLI G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHC 252

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              RVD A+++ + ++   ++ PD   + +LI GLC  G+L  A  + +EM    ++ D 
Sbjct: 253 KNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK 311

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y++LI    K G         K M +   + + V Y ALISG C+E     A  +L E
Sbjct: 312 VTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRE 371

Query: 319 MGDKGCKANPISYNVILGGLCKDG 342
           M   G K    +Y +I+   CK G
Sbjct: 372 MLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 105/198 (53%), Gaps = 2/198 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           ++ A ++F+EM    +      F TL++     G++D   E++ Q++ + +SPD  +YN 
Sbjct: 222 MDYANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 281

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G      L+ A  + DEM  + L+P  VT+ TLI G C E  ++ A + ++ +++  
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKE- 340

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N++ D   + +LI GLC  G    A  +  EM+   ++ + G Y+ +I+   K G     
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400

Query: 278 PAILKEMKERGCKPNSVT 295
             ++KEM+  G  P+ VT
Sbjct: 401 SKLMKEMQRDGYVPSVVT 418


>gi|255660940|gb|ACU25639.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 484

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 174/338 (51%), Gaps = 16/338 (4%)

Query: 18  PKLALQLFKNPNPNPNDTEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQ 68
           P +  +L  N   +  ++E H L+ FR+    NL  ++      II  LGRA   +  + 
Sbjct: 8   PSIDHELVYNVLHSAKNSE-HALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARC 66

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           IL  +     +   E ++  +I  YG+A +++ +++MF +M    V+ T+K ++ L    
Sbjct: 67  ILLDMPKKG-LEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVERTIKSYDALFKVI 125

Query: 129 LTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
           L  G+    K  F +++ + + P   ++N+++ G  +S ++E A + F++M  R + P +
Sbjct: 126 LRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMMWGFFLSGKVETANRFFEDMKSREIMPDV 185

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           VT+ T++ G C   +++EA K   + M+  N++P    + +LIKG  +V  +  AL   E
Sbjct: 186 VTYNTMVNGYCRVKKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDRVDDALRFVE 244

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCK 305
           EM    ++ +A  YS+L+  L  A + +E  +ILKEM ++   P  NS+ +  LISG CK
Sbjct: 245 EMKGFGMKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTDNSI-FMRLISGQCK 303

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             D +AA  +L  M           Y V++   CK G+
Sbjct: 304 AGDLDAAANVLKAMIRLSVPTEAGHYGVLIENYCKAGE 341



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 128/261 (49%), Gaps = 11/261 (4%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVS 149
           GF+   ++ E A + F++M S  +   V  +NT++N      K++  ++ F  M+ + + 
Sbjct: 159 GFFLSGKV-ETANRFFEDMKSREIMPDVVTYNTMVNGYCRVKKMEEAEKYFVEMKGRNIE 217

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P   +Y  LI G V   R++DA +  +EM    ++P  +T+ TL+ GLC   ++ EA  +
Sbjct: 218 PTVVTYTTLIKGYVSVDRVDDALRFVEEMKGFGMKPNAITYSTLLPGLCNAEKMSEARSI 277

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            ++++  Y    D  +F  LI G C  G+L  A  V + M+R  +  +AG Y  LI    
Sbjct: 278 LKEMVDKYIAPTDNSIFMRLISGQCKAGDLDAAANVLKAMIRLSVPTEAGHYGVLIENYC 337

Query: 270 KAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEMGD 321
           KAG  ++   +L ++ E+    +P S        YN LI   C       A  ++ ++  
Sbjct: 338 KAGEYDKAIKLLDKVIEKDIILRPQSTLHMESSAYNPLIEYLCNNGQTAKAEALVRQLMK 397

Query: 322 KGCKANPISYNVILGGLCKDG 342
            G + +P + N ++ G  ++G
Sbjct: 398 LGVQ-DPTALNTLIRGHSQEG 417



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 129/289 (44%), Gaps = 45/289 (15%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I+P  + +  ++  Y R + +E A + F EM   N++ TV  + TL+   ++  ++D   
Sbjct: 181 IMPDVVTYNTMVNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDAL 240

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT-FGTLIYG 196
              + M+ + + P+A +Y+ L+ G   + ++ +A  +  EMV + + PT  + F  LI G
Sbjct: 241 RFVEEMKGFGMKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMRLISG 300

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI-- 254
            C    +D A  + + ++R+ +V  +   +  LI+  C  GE   A+ + ++++   I  
Sbjct: 301 QCKAGDLDAAANVLKAMIRL-SVPTEAGHYGVLIENYCKAGEYDKAIKLLDKVIEKDIIL 359

Query: 255 ------EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK-----------------P 291
                  M++  Y+ LI  L   G+  +  A+++++ + G +                 P
Sbjct: 360 RPQSTLHMESSAYNPLIEYLCNNGQTAKAEALVRQLMKLGVQDPTALNTLIRGHSQEGSP 419

Query: 292 NSV-----------------TYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +S                   Y++L+  + K+ +   A   LD M + G
Sbjct: 420 DSAFELLKIMLRRKVDSEQSAYDSLVQSYLKKNEPADAKAALDSMIENG 468


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 155/311 (49%), Gaps = 5/311 (1%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           ++ +A  LKP   + + Y  +I  L +A    E +++  Q++ + R VP    +  +I  
Sbjct: 7   HELKAQGLKP---DDVSYTSMIWVLCKAGRLGEAEELFAQMEAE-RSVPCAYAYNTMIMG 62

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDA 152
           YG A   E A ++ + +       +V  FN++L       K+D    LF++M+K   P++
Sbjct: 63  YGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNS 122

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YNI+I    +  R+E+A+++ DEM    L P L+T   ++  LC   +++EA K+ E 
Sbjct: 123 STYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFES 182

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
             +     PD   + SLI GL   G++  A  + E+M+      +  +Y+SLI   F  G
Sbjct: 183 ASQ-RGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHG 241

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           RK +   I KE+  RGCKP+    N  +    K  + E    I +++   G   +  SY+
Sbjct: 242 RKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYS 301

Query: 333 VILGGLCKDGK 343
           +++ GL K G+
Sbjct: 302 ILIHGLTKAGQ 312



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 136/249 (54%), Gaps = 2/249 (0%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDAC 153
           +A  +E+   +F+++ S+     V+ ++ L++     G+      +F  M ++  + DA 
Sbjct: 274 KAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDAR 333

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN ++ G   S ++  A+++ +EM ++ +QPT+ T+G ++ GL    R+DEA  L E+ 
Sbjct: 334 AYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEE- 392

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
            +   ++ +  +++SLI G   VG +  A  + EEM++  +  +   ++SL+ AL KA  
Sbjct: 393 AKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEE 452

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            NE     + MKE  C PN+ TY+ LI+G C+ + +  AF    +M  +G   N ++Y  
Sbjct: 453 INEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTT 512

Query: 334 ILGGLCKDG 342
           ++ GL K G
Sbjct: 513 MISGLAKVG 521



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 158/338 (46%), Gaps = 17/338 (5%)

Query: 8   LACLPRLQK-DPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEM 66
           L CL + +K D  L+L      +  PN +              Y++II  L      +E 
Sbjct: 95  LTCLGKKRKVDEALSLFEVMKKDAEPNSST-------------YNIIIDMLCLGGRVEEA 141

Query: 67  QQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126
            +IL +++H + + P  +    ++    +AR LE A ++F+  S          + +L++
Sbjct: 142 YRILDEMEHAS-LFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLID 200

Query: 127 PKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
                G++D    LF+ +++   + +   Y  LI    +  R ED  K+F E+++R  +P
Sbjct: 201 GLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKP 260

Query: 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
            L    T +  +     V++   + EDI R Y   PD + ++ LI GL   G+      +
Sbjct: 261 DLTLLNTYMDCVFKAGEVEKGRMIFEDI-RSYGFLPDVRSYSILIHGLTKAGQARETSNI 319

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
              M +    +DA  Y++++    K+G+ ++   IL+EMKE+  +P   TY A++ G  K
Sbjct: 320 FHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAK 379

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +  + A+ + +E   KG + N + Y+ ++ G  K G+
Sbjct: 380 IDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGR 417



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 126/247 (51%), Gaps = 8/247 (3%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIH 160
           A + F E+ +  ++     + +++      G+L   +ELF  ME   S P A +YN +I 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G   + R EDA+K+ + + +R   P++V+F +++  L  + +VDEAL L E + +  + +
Sbjct: 62  GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK--DAE 119

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   +  +I  LC  G +  A  + +EM    +  +    + ++  L KA +  E   I
Sbjct: 120 PNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKI 179

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY-----NVIL 335
            +   +RGC P+ VTY +LI G  K+   + A+ + ++M D G  ANP+ Y     N  +
Sbjct: 180 FESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFI 239

Query: 336 GGLCKDG 342
            G  +DG
Sbjct: 240 HGRKEDG 246



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 142/296 (47%), Gaps = 4/296 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ ++ I+T LG+ +  DE   +   +K D    P    +  +I        +E A ++
Sbjct: 87  SVVSFNSILTCLGKKRKVDEALSLFEVMKKDAE--PNSSTYNIIIDMLCLGGRVEEAYRI 144

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
            DEM   ++   +   N +++      KL+   ++F+   ++  +PD  +Y  LI G   
Sbjct: 145 LDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGK 204

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             ++++A+++F++M+        V + +LI    +  R ++  K+ ++++R    KPD  
Sbjct: 205 KGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIR-RGCKPDLT 263

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           +  + +  +   GE+     + E++       D   YS LI  L KAG+  E   I   M
Sbjct: 264 LLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAM 323

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           K++G   ++  YNA++ GFCK      A+ IL+EM +K  +    +Y  I+ GL K
Sbjct: 324 KQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAK 379



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 88/185 (47%), Gaps = 3/185 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  I+  L +    DE   +  + K    I    +++ ++I  +G+   ++ A  + +EM
Sbjct: 370 YGAIVDGLAKIDRLDEAYMLFEEAKSKG-IELNVVLYSSLIDGFGKVGRIDEAYLILEEM 428

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
               +   V  +N+LL+  +   +++     FQ M E    P+  +Y+ILI+G    ++ 
Sbjct: 429 MKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKY 488

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
             A+  + +M K+ L P +VT+ T+I GL     + +A  L E   +     PD   F +
Sbjct: 489 NKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERF-KANGGIPDAASFNA 547

Query: 229 LIKGL 233
           LI+G+
Sbjct: 548 LIEGM 552


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 137/284 (48%), Gaps = 18/284 (6%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           T +VP    +  +I  + +A ++++A    DEM     + TV  + TL++  L   K+  
Sbjct: 518 TGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSV 577

Query: 137 MKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM--------------VKR 181
             ELF++M  K   P+  +Y  LI G   S  +E A +++  M              +K 
Sbjct: 578 ANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKN 637

Query: 182 RL--QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
            +  +P +VT+G L+ GLC   +V +A  L E  M V   +P+  V+ +LI G C   +L
Sbjct: 638 NVAEKPNVVTYGALVDGLCKAHKVKDARDLLE-TMFVDGCEPNTIVYDALIDGFCKAAKL 696

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A  V  +MV      +   YSSLI  LFK  R +    +L +M E  C PN V Y  +
Sbjct: 697 DEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEM 756

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I G  K    + A+ ++  M +KGCK N ++Y  ++ G  K GK
Sbjct: 757 IDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGK 800



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 132/312 (42%), Gaps = 19/312 (6%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK----EIIFCNVIGFYGRARL 98
           F  N + Y+ +I+ L  A  F+E    L++++  T  +P      I+ C  +      + 
Sbjct: 304 FVPNTILYNKMISGLCEASFFEEAMDFLNRMR-STSCIPNVQTYRILLCGCLN----KKQ 358

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNI 157
           L R  ++   M +     +   FN+L++            +L + MEK    P    YNI
Sbjct: 359 LGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNI 418

Query: 158 LIHGCVVSR-------RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           LI G + S          E A K ++EM+        V   +    LC   + ++A K+ 
Sbjct: 419 LI-GSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVI 477

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
            ++M    V PD   ++ +I  LC    +  A  + +EM    +  D   Y+ LI    K
Sbjct: 478 HEMMGNGFV-PDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSK 536

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
           AG   +    L EM   GC+P  VTY  LI  + K +    A  + + M  KGC  N I+
Sbjct: 537 AGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVIT 596

Query: 331 YNVILGGLCKDG 342
           Y  ++ G CK G
Sbjct: 597 YTALIDGYCKSG 608



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 112/273 (41%), Gaps = 12/273 (4%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           VP  I++  +I     A   E A+   + M S +    V+ +  LL   L   +L R K 
Sbjct: 305 VPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKR 364

Query: 140 LFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           +  +M  +   P    +N L+H    S     A+K+  +M K   +P  V +  LI  +C
Sbjct: 365 ILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSIC 424

Query: 199 L--ELRVDEALKLKEDIMRVYN-VKPDGQVF-----ASLIKGLCAVGELSLALGVKEEMV 250
              EL      +L E   + YN +   G V       S  + LC  G+   A  V  EM+
Sbjct: 425 SGGELPGPVTFELAE---KAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMM 481

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
            +    D   YS +I  L  A R      + KEMK  G  P+  TY  LI  F K    +
Sbjct: 482 GNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIK 541

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            A   LDEM   GC+   ++Y  ++    K  K
Sbjct: 542 QAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKK 574



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 127/274 (46%), Gaps = 18/274 (6%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSF----NVQMTVKFFNTLLNPK--LTCGKL 134
           P  I +  +I  Y ++  +E+A Q++  M       +V M  K  N +      +T G L
Sbjct: 592 PNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGAL 651

Query: 135 -------DRMKELFQIMEKYV----SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
                   ++K+   ++E        P+   Y+ LI G   + +L++A +VF +MV+   
Sbjct: 652 VDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGY 711

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P + T+ +LI  L  + R+D  LK+   ++   +  P+  ++  +I GL  V +   A 
Sbjct: 712 NPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLE-NSCAPNIVIYTEMIDGLSKVAKTDEAY 770

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            +   M     + +   Y+++I    KAG+ ++   + +EM  +GC PN VTY  LI+  
Sbjct: 771 KLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHC 830

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           C     + A+ +L+EM       +  SY  ++ G
Sbjct: 831 CATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEG 864



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 8/209 (3%)

Query: 137 MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           ++EL ++ +    P   +YN L+   + + +L+ A  V  EM +  L     T G     
Sbjct: 226 LEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQA 285

Query: 197 LCLELRVDEALKL--KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
           LC   +  EAL L  KED +      P+  ++  +I GLC       A+     M     
Sbjct: 286 LCKVGKWREALSLIEKEDFV------PNTILYNKMISGLCEASFFEEAMDFLNRMRSTSC 339

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
             +   Y  L+       +      IL  M   GC P+   +N+L+  +CK +DF  A+ 
Sbjct: 340 IPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYK 399

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +L +M    CK   + YN+++G +C  G+
Sbjct: 400 LLKKMEKCECKPGYVVYNILIGSICSGGE 428



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 128/310 (41%), Gaps = 38/310 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           N + YD +I    +A   DE Q++ H++ +H     P    + ++I    + + L+  L+
Sbjct: 679 NTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYN--PNVYTYSSLIDRLFKDKRLDLVLK 736

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
           +  +M   +    +  +  +++      K D   +L  +M EK   P+  +Y  +I G  
Sbjct: 737 VLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFG 796

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY------ 217
            + +++   ++F EM  +   P  VT+  LI   C    +DEA  L E++ + Y      
Sbjct: 797 KAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVS 856

Query: 218 ---------------------NVKPDGQ-----VFASLIKGLCAVGELSLALGVKEEMVR 251
                                 V+ +G      ++  LI      G L +AL + +E++ 
Sbjct: 857 SYCKVIEGYKREFILSLGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVIS 916

Query: 252 DKIEMDA--GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
             + M A   +Y+SLI +   A +      +  +M   G  P+  T+  L+ G  +   +
Sbjct: 917 ASMSMAAKKNLYTSLIYSFSYASKIGHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRW 976

Query: 310 EAAFTILDEM 319
           E A  + D +
Sbjct: 977 EEALQLSDSL 986



 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI----LKEMKERGCKPNSVTYNALI 300
           V EE +R+    D  +   L++ L +   +N    +    L  +K+ G KP  +TYNAL+
Sbjct: 189 VPEEFLREIRGDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALV 248

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             F + +  + A  +  EM + G   +  +       LCK GK
Sbjct: 249 QVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGK 291


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 141/284 (49%), Gaps = 14/284 (4%)

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
           FDEM+           ++P  I + ++I  Y +A  L++AL +F ++    +  TV  +N
Sbjct: 358 FDEMRA--------KGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYN 409

Query: 123 TLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
            L++     G L+   R+KE  ++ E+   PD C+Y IL++G  + R L      FDEM+
Sbjct: 410 ILIDGYCRLGDLEGARRLKE--EMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEML 467

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
            + L+P    + T I        +  A +L+E++M +  +  D   +  LI GLC  G L
Sbjct: 468 SKGLEPDCFAYNTRISAELTIGAITNAFQLREEMM-LRGISSDTVTYNVLIDGLCKTGSL 526

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A  +  +MV D + +D   Y+ LI A  + GR  E   I   M   G  P+ VTY   
Sbjct: 527 KDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLSPSVVTYTIF 586

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I  +C+  +   A+    +M ++G + N ++YNV++  LC+ G+
Sbjct: 587 IHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGR 630



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 115/234 (49%), Gaps = 2/234 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           FDEM S  ++     +NT ++ +LT G +    +L + +M + +S D  +YN+LI G   
Sbjct: 463 FDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCK 522

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  L+DA+ ++ +MV   L+   VT+  LI+  C   R+ EA  +  D M    + P   
Sbjct: 523 TGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIF-DGMVASGLSPSVV 581

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +   I   C  G L LA G   +M+ + +E +   Y+ L+ AL + GR         EM
Sbjct: 582 TYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAYQHFHEM 641

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            ERG  PN  TY  LI G CKE ++  A  +  EM  KG   +  ++N +  G 
Sbjct: 642 LERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIHPDHCTHNALFKGF 695



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 118/245 (48%), Gaps = 5/245 (2%)

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILI 159
           + L  F EM+   V   VK  N +L       + D M+ ++  +++  V P   +YN L+
Sbjct: 177 QCLSAFQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLL 236

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQ--PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
                + R++ A  +  +M  R     P  VT+  +I GL  +  +++A +L  DIMR+ 
Sbjct: 237 DSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLV-DIMRL- 294

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           + K     +  LI GL A   +  A  +  EM  + I      Y++LI  LFK G     
Sbjct: 295 SKKASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAA 354

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
                EM+ +G  P+ +TYN+LI+G+CK  + + A  +  ++   G     ++YN+++ G
Sbjct: 355 QVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDG 414

Query: 338 LCKDG 342
            C+ G
Sbjct: 415 YCRLG 419



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 116/238 (48%), Gaps = 5/238 (2%)

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS---PDACSYNILIHG 161
           ++ +M    V+ ++  +NTLL+     G++D+   L + ME   +   P+  +YN++I+G
Sbjct: 216 VYSDMLQLGVEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVING 275

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 LE A ++ D M +   + +  T+  LI GL     V++A  L  + M    + P
Sbjct: 276 LARKGELEKAAQLVDIM-RLSKKASAFTYNPLITGLLARDFVEKAGALLLE-MENEGIVP 333

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
               + +LI GL   G    A    +EM    +  D   Y+SLI+   KAG   +   + 
Sbjct: 334 TVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLF 393

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
            ++K  G  P  +TYN LI G+C+  D E A  + +EM ++ C  +  +Y +++ G C
Sbjct: 394 GDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSC 451



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 133/298 (44%), Gaps = 7/298 (2%)

Query: 38  HPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           H + PF   +   + ++  L  A  +D+M+ +   +     + P    +  ++  + +A 
Sbjct: 188 HGVAPF---VKECNCVLRVLRDAARWDDMRAVYSDMLQ-LGVEPSIFTYNTLLDSFCKAG 243

Query: 98  LLERALQMFDEMSSFNVQMTVK--FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSY 155
            +++A+ +  +M +           +N ++N     G+L++  +L  IM       A +Y
Sbjct: 244 RMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVDIMRLSKKASAFTY 303

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N LI G +    +E A  +  EM    + PT+VT+ TLI GL  +    EA ++K D MR
Sbjct: 304 NPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGL-FKTGNAEAAQVKFDEMR 362

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
              + PD   + SLI G C  G L  AL +  ++ R  +      Y+ LI    + G   
Sbjct: 363 AKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLE 422

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
               + +EM E  C P+  TY  L++G C   +        DEM  KG + +  +YN 
Sbjct: 423 GARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNT 480



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 2/103 (1%)

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
           L   +EM R  +       + ++  L  A R ++  A+  +M + G +P+  TYN L+  
Sbjct: 179 LSAFQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLDS 238

Query: 303 FCKEEDFEAAFTILDEMGDK--GCKANPISYNVILGGLCKDGK 343
           FCK    + A  +L +M  +  GC  N ++YNV++ GL + G+
Sbjct: 239 FCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGE 281


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 124/245 (50%), Gaps = 2/245 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           ++RAL   D++ +   Q+    + TL+N     G+   +  L + +E + V PD   Y  
Sbjct: 179 IKRALYFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTT 238

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +IH    ++R+ DA  ++ EM+ + + P + T+ TLIYG C+   + EA  L  + M++ 
Sbjct: 239 IIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNE-MKLK 297

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N+ PD   F  LI  L   G++  A+ + EEM    +  +   Y+SLI  L K       
Sbjct: 298 NINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERA 357

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            A+ K+MKE+G +P+  +Y  L+   CK    E A      +  KG   N  +YNV++ G
Sbjct: 358 IALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMING 417

Query: 338 LCKDG 342
           LCK G
Sbjct: 418 LCKAG 422



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 138/297 (46%), Gaps = 3/297 (1%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
            H+D I++ L + K +  +  +  Q + +  + P       +I  +     +  A  +F 
Sbjct: 94  FHFDNILSSLVKNKHYLTVISLFKQFQSNG-VTPNLCTLNILINCFCHLAHITFAFSVFA 152

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSR 166
            +            NTL+     CG++ R      +++ +    D  SY  LI+G   + 
Sbjct: 153 NILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCKAG 212

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
             +   ++  ++    ++P +V + T+I+ LC   RV +A  L  + M V  + P+   +
Sbjct: 213 ETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSE-MIVKGISPNVFTY 271

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
            +LI G C +G L  A  +  EM    I  D   ++ LI AL K G+ +E  ++ +EMK 
Sbjct: 272 NTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKH 331

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +   PN VTY +LI G CK    E A  +  +M ++G + +  SY ++L  LCK G+
Sbjct: 332 KNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGR 388



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 140/282 (49%), Gaps = 3/282 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ + + Y  +I  L +A     + ++L +L+  + + P  +++  +I    + + +  A
Sbjct: 194 FQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHS-VKPDVVMYTTIIHCLCKNKRVGDA 252

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHG 161
             ++ EM    +   V  +NTL+      G L     L   M+ K ++PD  ++NILI  
Sbjct: 253 CDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDA 312

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                ++++A  +F+EM  + + P +VT+ +LI GLC    ++ A+ L +  M+   ++P
Sbjct: 313 LGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKK-MKEQGIQP 371

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   +  L+  LC  G L  A    + ++     ++   Y+ +I+ L KAG   +   + 
Sbjct: 372 DVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLK 431

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
            +M+ +GC P+++T+  +I    ++++ + A   L EM  +G
Sbjct: 432 SKMEGKGCMPDAITFKTIICALFEKDENDKAEKFLREMIARG 473



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 86/178 (48%), Gaps = 3/178 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LK    ++  ++++I  LG+    DE   +  ++KH   + P  + + ++I    +   L
Sbjct: 296 LKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKN-MFPNIVTYTSLIDGLCKNHHL 354

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNIL 158
           ERA+ +  +M    +Q  V  +  LL+     G+L+  K+ FQ ++ K    +  +YN++
Sbjct: 355 ERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVM 414

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDIMR 215
           I+G   +    D   +  +M  +   P  +TF T+I  L  +   D+A K L+E I R
Sbjct: 415 INGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKFLREMIAR 472


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 146/303 (48%), Gaps = 7/303 (2%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           PL+ F  +++ Y  +I  L  A   DE  ++  ++       P   ++  ++     A  
Sbjct: 37  PLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQ-----PDMHMYAALVKGLCNAER 91

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
            E  L M   M     + + + +  +++ +    K    +E+ Q M EK ++P   +   
Sbjct: 92  GEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTA 151

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I+      R+ DA +V + M  R  +P + T+  L+ G C E +V +A+ L    MR  
Sbjct: 152 VINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNK-MRAC 210

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            V PD   +  LI+G C  G +  A  +   M  D +  D   Y++LI+AL K GR ++ 
Sbjct: 211 GVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQA 270

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            ++   ++ RG KPN+VT+N+LI+G CK    + A+  L++M   GC  +  +Y+  +  
Sbjct: 271 CSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEH 330

Query: 338 LCK 340
           LCK
Sbjct: 331 LCK 333



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 135/302 (44%), Gaps = 3/302 (0%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           +R +   Y  ++    R +   E +++L ++  +  + P  +    VI  Y +   +  A
Sbjct: 107 WRPSTRAYAAVVDFRCRERKAKEAEEMLQEM-FEKGLAPCVVTCTAVINAYCKEGRMSDA 165

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
           L++ + M     +  V  +N L+      GK+ +   L   M    V+PDA +YN+LI G
Sbjct: 166 LRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRG 225

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
             +   +E A+++   M    L     T+  LI  LC + R D+A  L  D +    +KP
Sbjct: 226 QCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLF-DSLETRGIKP 284

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   F SLI GLC  G+  +A    E+MV      D   YSS I  L K     E  + +
Sbjct: 285 NAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFI 344

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM ++  KP++V Y  +I    KE ++        EM   GC  + ++Y   +   C +
Sbjct: 345 GEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIE 404

Query: 342 GK 343
           G+
Sbjct: 405 GR 406



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 120/230 (52%), Gaps = 44/230 (19%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PDA ++N LI G   + +++ A  +FD+M  R     +V++ TLI GLC   R+DEA++L
Sbjct: 8   PDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVEL 67

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAV--GELSL-------ALGVK-------------- 246
             ++      +PD  ++A+L+KGLC    GE  L        LG +              
Sbjct: 68  FGEM-----DQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRC 122

Query: 247 --------EEMVRDKIEMDAG----IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
                   EEM+++  E          +++I+A  K GR ++   +L+ MK RGCKPN  
Sbjct: 123 RERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVW 182

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANP--ISYNVILGGLCKDG 342
           TYNAL+ GFC E     A T+L++M  + C  NP  ++YN+++ G C DG
Sbjct: 183 TYNALVQGFCNEGKVHKAMTLLNKM--RACGVNPDAVTYNLLIRGQCIDG 230



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 133/298 (44%), Gaps = 39/298 (13%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    F ++I  Y R   ++ A  +FD+M        V  + TL+      G++D   EL
Sbjct: 8   PDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVEL 67

Query: 141 FQIMEKYVSPDACSYNILIHGCVVSRRLEDA-----------WK---------------- 173
           F  M++   PD   Y  L+ G   + R E+            W+                
Sbjct: 68  FGEMDQ---PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRE 124

Query: 174 --------VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
                   +  EM ++ L P +VT   +I   C E R+ +AL++ E +M++   KP+   
Sbjct: 125 RKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLE-LMKLRGCKPNVWT 183

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + +L++G C  G++  A+ +  +M    +  DA  Y+ LI      G       +L+ M+
Sbjct: 184 YNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLME 243

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             G   +  TYNALI+  CK+   + A ++ D +  +G K N +++N ++ GLCK GK
Sbjct: 244 GDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGK 301



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 99/221 (44%), Gaps = 2/221 (0%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +N L+N     G+ D+   LF  +E + + P+A ++N LI+G   S + + AWK  ++MV
Sbjct: 254 YNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMV 313

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
                P   T+ + I  LC      E L    ++++  +VKP    +  +I  L      
Sbjct: 314 SAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQ-KDVKPSTVNYTIVIHKLLKERNY 372

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
            L      EMV      D   Y++ + A    GR NE   +L EM + G   +++ YN L
Sbjct: 373 GLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTL 432

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + G       + A +IL +M       N  +Y ++L  L +
Sbjct: 433 MDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVR 473



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 90/201 (44%), Gaps = 40/201 (19%)

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           MV+   +P   TF +LI G C   +VD A  L  D M +     D   +A+LI+GLC  G
Sbjct: 1   MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLF-DKMPLRGFAQDVVSYATLIEGLCEAG 59

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS---- 293
            +  A+ +  EM +  + M    Y++L+  L  A R  E   +L+ MKE G +P++    
Sbjct: 60  RIDEAVELFGEMDQPDMHM----YAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYA 115

Query: 294 -------------------------------VTYNALISGFCKEEDFEAAFTILDEMGDK 322
                                          VT  A+I+ +CKE     A  +L+ M  +
Sbjct: 116 AVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLR 175

Query: 323 GCKANPISYNVILGGLCKDGK 343
           GCK N  +YN ++ G C +GK
Sbjct: 176 GCKPNVWTYNALVQGFCNEGK 196



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 72/348 (20%), Positives = 141/348 (40%), Gaps = 57/348 (16%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTR-IVPKEIIFCNVIGFYGRARLLERALQMFDE 108
           Y+ +I  L +    D+   +   L  +TR I P  + F ++I    ++   + A +  ++
Sbjct: 254 YNALINALCKDGRTDQACSLFDSL--ETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEK 311

Query: 109 MSSFNVQMTVKFFNTLLNPKLTC-GKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRR 167
           M S         +++ +       G  + +  + ++++K V P   +Y I+IH  +  R 
Sbjct: 312 MVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERN 371

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
                + + EMV     P +VT+ T +   C+E R++EA  +  + M    V  D   + 
Sbjct: 372 YGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLME-MSKNGVTVDTMAYN 430

Query: 228 SLIKGLCAVGELSLALGVKEEM-----------------------------------VRD 252
           +L+ G  ++G+   A+ + ++M                                   V  
Sbjct: 431 TLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWK 490

Query: 253 KIEM-----------------DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            IE+                 ++G YSS++    + GR  E  +++  MKE     N   
Sbjct: 491 AIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDI 550

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y AL++ FCK + +  A+ ++  M   G     +SY  +L GL  +G+
Sbjct: 551 YTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQ 598



 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 107/261 (40%), Gaps = 39/261 (14%)

Query: 3   TSSIRLACLP-RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAK 61
           T+S+R  C+  RL +   + +++ KN                  + + Y+ ++       
Sbjct: 395 TTSMRAYCIEGRLNEAENVLMEMSKNG--------------VTVDTMAYNTLMDGHASIG 440

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE-----------RALQMFDEMS 110
             D    IL Q+      VP +  +  ++    R RL+E           +A+++ D   
Sbjct: 441 QTDHAVSILKQMT-SVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFG 499

Query: 111 SFNVQMTVKF------FNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
            F+V    +F      ++++L      G+ +    L  +M E  +S +   Y  L+    
Sbjct: 500 LFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFC 559

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM--RVYNVKP 221
            S+R  DAW +   M++    P L+++  L+ GL  E + D+A   KE  M  R  +  P
Sbjct: 560 KSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKA---KEIFMNSRWKDYSP 616

Query: 222 DGQVFASLIKGLCAVGELSLA 242
           D  V+  +I GL   G   ++
Sbjct: 617 DEIVWKVIIDGLIKKGHSDIS 637


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 155/307 (50%), Gaps = 8/307 (2%)

Query: 39  PLKPFRYNLLHYDLIITKL-GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           P++P  Y    Y+ +I  L GR +  + +  +   L+   R VP  + +  ++    +  
Sbjct: 153 PVEPDAYT---YNTLIRGLCGRGRTANALAVLDEMLRR--RCVPDVVTYTILLEATCKRS 207

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYN 156
             ++A+++ DEM        +  +N ++N     G++D   E  + +  Y   P+  SYN
Sbjct: 208 GYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYN 267

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           I++ G   + R EDA ++  EM ++   P +VTF  LI  LC +  V+ AL++ E I + 
Sbjct: 268 IVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPK- 326

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           Y   P+   +  L+   C   ++  A+   + MV      D   Y++L++AL ++G  + 
Sbjct: 327 YGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDV 386

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +L ++K++GC P  ++YN +I G  K    + A  +L+EM  KG + + I+Y+ I  
Sbjct: 387 AVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAA 446

Query: 337 GLCKDGK 343
           GLC++ +
Sbjct: 447 GLCREDR 453



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 135/266 (50%), Gaps = 9/266 (3%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK---LDRM 137
           P  + +  ++  Y  A  L+ A ++  EM    V+     +NTL+  +  CG+    + +
Sbjct: 124 PDVMAYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLI--RGLCGRGRTANAL 178

Query: 138 KELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
             L +++ +   PD  +Y IL+         + A K+ DEM  +   P +VT+  ++ G+
Sbjct: 179 AVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGI 238

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C E RVD+A++  +++   Y  +P+   +  ++KGLC       A  +  EM +     +
Sbjct: 239 CQEGRVDDAIEFLKNLPS-YGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPN 297

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              ++ LIS L + G       +L+++ + GC PNS++YN L+  FCK++  + A   LD
Sbjct: 298 VVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLD 357

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
            M  +GC  + +SYN +L  LC+ G+
Sbjct: 358 LMVSRGCYPDIVSYNTLLTALCRSGE 383



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 107/208 (51%), Gaps = 12/208 (5%)

Query: 132 GKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           G+LD   E  +++     PDA +   LI     S R  +A +V          P ++ + 
Sbjct: 79  GELD---EALRLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAA-----CGPDVMAYN 130

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
            ++ G C   ++D A +L  ++     V+PD   + +LI+GLC  G  + AL V +EM+R
Sbjct: 131 AMVAGYCGAGQLDAARRLVAEM----PVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLR 186

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
            +   D   Y+ L+ A  K     +   +L EM+++GC P+ VTYN +++G C+E   + 
Sbjct: 187 RRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDD 246

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLC 339
           A   L  +   GC+ N +SYN++L GLC
Sbjct: 247 AIEFLKNLPSYGCEPNTVSYNIVLKGLC 274



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 141/298 (47%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y++++  + +    D+  + L  L       P  + +  V+     A   E A ++
Sbjct: 227 DIVTYNVVVNGICQEGRVDDAIEFLKNLPS-YGCEPNTVSYNIVLKGLCTAERWEDAEEL 285

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
             EM        V  FN L++     G ++   E+ + + KY  +P++ SYN L+H    
Sbjct: 286 MGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCK 345

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            ++++ A    D MV R   P +V++ TL+  LC    VD A++L    ++     P   
Sbjct: 346 QKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQ-LKDKGCAPVLI 404

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + ++I GL   G+   AL +  EMV   ++ D   YS++ + L +  R  +      ++
Sbjct: 405 SYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKV 464

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++ G +PN+V YNA+I G CK  +  +A  +   M   GC  N  +Y +++ GL  +G
Sbjct: 465 QDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEG 522



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 130/279 (46%), Gaps = 38/279 (13%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ ++++I+ L R  + +   ++L Q+       P  + +  ++  + + + +++A+  
Sbjct: 297 NVVTFNMLISFLCRKGLVEPALEVLEQIPK-YGCTPNSLSYNPLLHAFCKQKKMDKAMAF 355

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            D M S      +  +NTLL      G++D   EL  Q+ +K  +P   SYN +I G   
Sbjct: 356 LDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTK 415

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + + ++A ++ +EMV + LQP ++T+ T+  GLC E R+++A++    +  +  ++P+  
Sbjct: 416 AGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDM-GIRPNTV 474

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++ ++I GLC   E   A+ +   M+ +                                
Sbjct: 475 LYNAIILGLCKRRETHSAIDLFAYMIGN-------------------------------- 502

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
              GC PN  TY  LI G   E   + A  +LDE+  +G
Sbjct: 503 ---GCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRG 538


>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
 gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
 gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
          Length = 583

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 139/294 (47%), Gaps = 36/294 (12%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           +++++  L R        ++L +L+ D   +P  + F +VI  Y +A  LE A+ ++++M
Sbjct: 289 HNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDM 348

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
            +  +                                   P+  +YN+LI+G      L 
Sbjct: 349 VASGIM----------------------------------PNTVTYNVLINGYGKVGDLG 374

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
            A +V+ +M + R  P +VTF +LI G C   ++D+AL++  D M  + ++P+   F+ +
Sbjct: 375 SAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSD-MAQHRIQPNVYTFSII 433

Query: 230 IKGLCAVGELSLALGVKEEM-VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           I  LC       A+G+  E+ +R  I   A IY+ +I  L K G+ +E   I K M+E+G
Sbjct: 434 IHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKG 493

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           C+P+  TY  LI G+C +     A     EM + GC  + I+ N  +  L K G
Sbjct: 494 CRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAG 547



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 133/293 (45%), Gaps = 2/293 (0%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           II  L R+    +  Q+  Q+       P       ++     A LL+ +  +  + S F
Sbjct: 150 IIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEF 209

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDACSYNILIHGCVVSRRLED 170
             ++    +N L++  +  G++  +  LF+  I ++  SPD  S+N++I G     +++ 
Sbjct: 210 GCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQK 269

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           A ++ + M +    P  VT   L+ GLC    V    ++   + R     P+   F S+I
Sbjct: 270 ALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVI 329

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
            G C  G+L  A+ V  +MV   I  +   Y+ LI+   K G       + ++M    C 
Sbjct: 330 SGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCP 389

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           P+ VT+++LI G+C+    + A  I  +M     + N  ++++I+  LCK  +
Sbjct: 390 PDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNR 442



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 79/159 (49%), Gaps = 1/159 (0%)

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
           + P+  +   +I  LC   R  +AL+L + +   Y   PD +  + L+        L  +
Sbjct: 140 ITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDAS 199

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL-KEMKERGCKPNSVTYNALIS 301
             +  +       ++A  Y+ L+S+L   GR ++  A+  + +++R   P+  ++N +I 
Sbjct: 200 ATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIK 259

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           G C+    + A  +++ M + GC  + +++N+++ GLC+
Sbjct: 260 GVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCR 298


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 156/333 (46%), Gaps = 38/333 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + +  +I  LG+    D+   +  ++  D   VP  I++ ++I  + +    E   ++
Sbjct: 228 NAVTFSSLIDGLGKCGRVDDAYSLYEKM-LDCGHVPGAIVYTSLIRSFFKCGRKEDGHKI 286

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG--- 161
           + EM        +   NT ++     G+ ++ + LF +I      PDA SY+ILIHG   
Sbjct: 287 YKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVK 346

Query: 162 ------------------CVV--------------SRRLEDAWKVFDEMVKRRLQPTLVT 189
                             CV+              S ++  A+++ +EM  +   PT+VT
Sbjct: 347 AGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVT 406

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           +G++I GL    R+DEA  L E+  +   +K +  V++SLI G   VG +  A  + EE+
Sbjct: 407 YGSVIDGLAKIDRLDEAYMLFEE-AKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEEL 465

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           ++  +  +   ++ L+ AL KA   NE     + MK+  C PN +TY+ LI+G C+   F
Sbjct: 466 MQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKF 525

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             AF    EM   G K N I+Y  ++ GL K G
Sbjct: 526 NKAFVFWQEMQKLGLKPNTITYTTMISGLAKAG 558



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 146/295 (49%), Gaps = 4/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I   G A  FDE   +L + K    I P  I +  ++   G+ R +E AL++F+EM
Sbjct: 93  YNTMIMGYGSAGKFDEAYGLLERQKAKGSI-PSVIAYNCILTCLGKKRRVEEALRIFEEM 151

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
               V   V  +N L++     GKL+   E+   ME+  + P+  + NI+I     +++L
Sbjct: 152 KRDAVP-NVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKL 210

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E+A  +F+ M  +   P  VTF +LI GL    RVD+A  L E ++   +V P   V+ S
Sbjct: 211 EEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHV-PGAIVYTS 269

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI+     G       + +EMV      D  + ++ +  +FKAG   +  A+ +E+   G
Sbjct: 270 LIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHG 329

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             P++ +Y+ LI G  K       + +   M ++GC  +  +YN ++ G CK GK
Sbjct: 330 FIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGK 384



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 144/296 (48%), Gaps = 4/296 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ I+T LG+ +  +E  +I  ++K D   VP    +  +I    R   L  AL++
Sbjct: 124 SVIAYNCILTCLGKKRRVEEALRIFEEMKRDA--VPNVPTYNILIDMLCREGKLNAALEI 181

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            D+M    +   V   N +++      KL+    +F+ M +K  +P+A +++ LI G   
Sbjct: 182 RDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGK 241

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R++DA+ ++++M+     P  + + +LI       R ++  K+ ++++      PD  
Sbjct: 242 CGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHT-GCSPDLT 300

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           +  + +  +   GE      +  E+       DA  YS LI  L KAG  NE   +   M
Sbjct: 301 LINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAM 360

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           KE+GC  ++  YNA+I GFCK      A+ +L+EM  KG     ++Y  ++ GL K
Sbjct: 361 KEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAK 416



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 146/311 (46%), Gaps = 12/311 (3%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           +  AH   P   +   Y ++I  L +A + +E  ++ + +K    ++        + GF 
Sbjct: 324 EINAHGFIP---DARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFC 380

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP--- 150
              ++  +A Q+ +EM       TV  + ++++      K+DR+ E + + E+  S    
Sbjct: 381 KSGKV-NKAYQLLEEMKVKGHPPTVVTYGSVID---GLAKIDRLDEAYMLFEEAKSNGIK 436

Query: 151 -DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
            +   Y+ LI G     R+++A+ + +E++++ L P + T+  L+  L     ++EAL  
Sbjct: 437 LNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALIC 496

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            +  M+     P+   ++ LI GLC V + + A    +EM +  ++ +   Y+++IS L 
Sbjct: 497 FQS-MKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLA 555

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           KAG   E   +    K  G  P+S +YNA+I G         A+ + +E   KGC  +  
Sbjct: 556 KAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTK 615

Query: 330 SYNVILGGLCK 340
           +  V+L  L K
Sbjct: 616 TCVVLLDALHK 626



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 129/260 (49%), Gaps = 13/260 (5%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLN--------PKLTC--GKLDRMKELFQIM 144
           ++R L  A  +   M  F  +     +  L+         P + C   +LD   ELF+ +
Sbjct: 22  KSRKLREAFDIIQTMRKFKFRPAFSAYTILIGKVGLMLLFPWVLCKANRLDEAVELFEQL 81

Query: 145 EKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
           E+    P A +YN +I G   + + ++A+ + +    +   P+++ +  ++  L  + RV
Sbjct: 82  EQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRV 141

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
           +EAL++ E++ R  +  P+   +  LI  LC  G+L+ AL ++++M R  +  +    + 
Sbjct: 142 EEALRIFEEMKR--DAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNI 199

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +I  L KA +  E  +I + M ++ C PN+VT+++LI G  K    + A+++ ++M D G
Sbjct: 200 MIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCG 259

Query: 324 CKANPISYNVILGGLCKDGK 343
                I Y  ++    K G+
Sbjct: 260 HVPGAIVYTSLIRSFFKCGR 279


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 139/293 (47%), Gaps = 5/293 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNV-IGFYGRARLLERALQMFDE 108
           ++ ++T + + K    +  + HQ+  D+  +P  I   ++ I  +     +  A  +  +
Sbjct: 64  FNKLLTSIAKMKHHSTLLSLSHQM--DSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAK 121

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRR 167
           +     Q     F TL+      GK+     LF +++ +   PD  +Y  LI+G      
Sbjct: 122 ILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGN 181

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
              A ++   MV++  QP +  + T+I  LC + +V EA  L  + M    + PD   + 
Sbjct: 182 TSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSE-MVTKGISPDIFTYN 240

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           SLI  LC + E      +  EMV  KI  D   +++++ AL K G+  E   ++ +M +R
Sbjct: 241 SLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQR 300

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           G +PN VTY AL+ G C   + + A  + D M  KGC  N ISYN ++ G CK
Sbjct: 301 GVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCK 353



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 2/245 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           ++ A+++FD M        V  +NTL+N      ++D+   LF ++  + + PD  +Y+ 
Sbjct: 376 MDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYST 435

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LIHG     RL+DA  +F EMV     P LVT+  L+  LC    + EA+ L + I    
Sbjct: 436 LIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAI-EGS 494

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N+ PD QV    I G+C  GEL  A  +   +    ++ D   YS +I+ L + G  +E 
Sbjct: 495 NLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEA 554

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + +EM E GC  N   YN +  GF +  +   A  +L EM  +G  A+  +  + +  
Sbjct: 555 SKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKM 614

Query: 338 LCKDG 342
           L  DG
Sbjct: 615 LSDDG 619



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 124/259 (47%), Gaps = 21/259 (8%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIH 160
           AL +FD+M     +  V  + TL+N     G     ++ L  +++K   P+  +YN +I 
Sbjct: 150 ALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIID 209

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                R++ +A+ +F EMV + + P + T+ +LI+ LC          L  +++    + 
Sbjct: 210 SLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVD-SKIM 268

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   F +++  LC  G+++ A  V ++M++  +E +   Y++L+         +E   +
Sbjct: 269 PDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKV 328

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEE-------------------DFEAAFTILDEMGD 321
              M  +GC PN ++YN LI+G+CK +                   + + A  + D M  
Sbjct: 329 FDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVC 388

Query: 322 KGCKANPISYNVILGGLCK 340
           KGC  N ISYN ++ G CK
Sbjct: 389 KGCMPNVISYNTLINGYCK 407



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 123/246 (50%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           ++ A+  F+ M       +   FN LL           +  L   M+ + + P+  + +I
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHI 101

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+      R+  A+ V  +++K   QP   TF TLI G+C+E ++ EAL L  D M   
Sbjct: 102 LINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLF-DKMIGE 160

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             +PD   + +LI GLC VG  S A+ +   MV+   + +   Y+++I +L K  +  E 
Sbjct: 161 GFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEA 220

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +  EM  +G  P+  TYN+LI   C   +++   T+L+EM D     + +S+N ++  
Sbjct: 221 FNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDA 280

Query: 338 LCKDGK 343
           LCK+GK
Sbjct: 281 LCKEGK 286



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 150/353 (42%), Gaps = 57/353 (16%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y+ +I  L     +  +  +L+++  D++I+P  + F  V+    +   +  A  +
Sbjct: 235 DIFTYNSLIHALCNLCEWKHVATLLNEMV-DSKIMPDVVSFNTVVDALCKEGKVTEAHDV 293

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHG-CV 163
            D+M    V+  V  +  L++      ++D   ++F  M  K   P+  SYN LI+G C 
Sbjct: 294 VDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCK 353

Query: 164 VSR------------------RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
           + R                   +++A KVFD MV +   P ++++ TLI G C   R+D+
Sbjct: 354 IQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDK 413

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR-------------- 251
           A+ L  ++ R   + PD   +++LI GLC V  L  A+ +  EMV               
Sbjct: 414 AMYLFGEMCR-QELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILL 472

Query: 252 ---------------------DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
                                  ++ D  + +  I  + +AG       +   +  +G +
Sbjct: 473 DYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQ 532

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           P+  TY+ +I+G C+    + A  +  EM + GC  N   YN I  G  ++ +
Sbjct: 533 PDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNE 585



 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 47/242 (19%), Positives = 94/242 (38%), Gaps = 42/242 (17%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L   +   +   + H++   ++I P  + +  ++ +  + R L  A+ +   +
Sbjct: 433 YSTLIHGLCHVERLQDAIALFHEMVACSQI-PNLVTYRILLDYLCKNRYLAEAMALLKAI 491

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
              N+   ++  N  ++     G+L+  ++LF  +  K + PD  +Y+I+I+G      L
Sbjct: 492 EGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLL 551

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           ++A K+F EM                         DE                +G ++ +
Sbjct: 552 DEASKLFREM-------------------------DEN-----------GCTLNGCIYNT 575

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           + +G     E S A+ + +EMV      DA   +  +  L   G       IL+     G
Sbjct: 576 ITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDGLDQSLKQILRN----G 631

Query: 289 CK 290
           CK
Sbjct: 632 CK 633


>gi|255561341|ref|XP_002521681.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539072|gb|EEF40668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 458

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 118/208 (56%), Gaps = 2/208 (0%)

Query: 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR-RLQPTLVTFGTL 193
           D +K + ++  K+  PD+ +YN L+      R L + +   DEM     L+P LVT+  L
Sbjct: 172 DAVKLVKELSLKHSKPDSFTYNFLVKCLCKCRALSNVYSFIDEMRSSFDLEPNLVTYTIL 231

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I  +C    + EA++L   I+R    KPD  V+ +++KG C + + S A+ V ++M  + 
Sbjct: 232 IDNVCNSKNLREAMRLL-GILRECGFKPDCFVYNTIMKGYCMLSKGSDAIQVFKKMKEEG 290

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           IE D   Y++LI  L K GR +E    LK M E G  P++VTY +L++G C++ D   A 
Sbjct: 291 IEPDLITYNTLIFGLSKGGRVSEAKRYLKIMVESGHFPDAVTYTSLMNGLCRKGDALGAL 350

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKD 341
            +L++M  KGC  N  +YN +L GLCK+
Sbjct: 351 ALLEDMEMKGCSPNSCTYNTLLYGLCKE 378



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 139/324 (42%), Gaps = 49/324 (15%)

Query: 30  PNPNDTEAHPL------KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL--KHDTRIVP 81
           P+P  +  H +        F    +  D+ +  L  A   D+  +++ +L  KH     P
Sbjct: 131 PDPTLSPVHQILNLMVNNGFMPTQVTVDIAVRALCSAGKEDDAVKLVKELSLKHSK---P 187

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEM-SSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
               +  ++    + R L       DEM SSF+++  +  +  L++       L     L
Sbjct: 188 DSFTYNFLVKCLCKCRALSNVYSFIDEMRSSFDLEPNLVTYTILIDNVCNSKNLREAMRL 247

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
             I+ E    PD   YN ++ G  +  +  DA +VF +M +  ++P L+T+ TLI+GL  
Sbjct: 248 LGILRECGFKPDCFVYNTIMKGYCMLSKGSDAIQVFKKMKEEGIEPDLITYNTLIFGLSK 307

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             RV EA K    IM      PD   + SL+ GLC  G+   ALG               
Sbjct: 308 GGRVSEA-KRYLKIMVESGHFPDAVTYTSLMNGLCRKGD---ALG--------------- 348

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
                  AL          A+L++M+ +GC PNS TYN L+ G CKE   E    + + +
Sbjct: 349 -------AL----------ALLEDMEMKGCSPNSCTYNTLLYGLCKERLLEKGIELYNVI 391

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
            + G   +  SY   +  LC++GK
Sbjct: 392 KEGGMLLDTASYATFVRALCREGK 415


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 154/303 (50%), Gaps = 3/303 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + +++ Y+ ++  L +A  +++   +L  +     IVP  I F  ++  + +   L+
Sbjct: 247 KGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV-SREIVPNVITFNVLLDVFVKEGKLQ 305

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
            A +++ EM +  +   +  +NTL++      +L     +  +M +   SPD  ++  LI
Sbjct: 306 EANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLI 365

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G  + +R++D  KVF  + KR L    VT+  L+ G C   ++  A +L ++ M  + V
Sbjct: 366 KGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE-MVSHGV 424

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   +  L+ GLC  G+L  AL + E++ + K+++   +Y+++I  + K G+  +   
Sbjct: 425 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWN 484

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +   +  +G KPN +TY  +ISG CK+     A  +L +M + G   N  +YN ++    
Sbjct: 485 LFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHL 544

Query: 340 KDG 342
           +DG
Sbjct: 545 RDG 547



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 147/300 (49%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI-IFCNVIGFYGRARLLERALQ 104
           +++ Y+ I+  + R+        +L +++   R V  ++  +  +I    R   ++ A+ 
Sbjct: 182 DVVTYNSIVNGICRSGDTSLALDLLRKMEE--RNVKADVFTYSTIIDSLCRDGCIDAAIS 239

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
           +F EM +  ++ +V  +N+L+      GK +    L + M  + + P+  ++N+L+   V
Sbjct: 240 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 299

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              +L++A +++ EM+ R + P ++T+ TL+ G C++ R+ EA  +  D+M      PD 
Sbjct: 300 KEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML-DLMVRNKCSPDI 358

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             F SLIKG C V  +   + V   + +  +  +A  YS L+    ++G+      + +E
Sbjct: 359 VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE 418

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M   G  P+ +TY  L+ G C     E A  I +++         + Y  I+ G+CK GK
Sbjct: 419 MVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGK 478



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 124/264 (46%), Gaps = 2/264 (0%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD- 135
           +R +P  + F        R +     L    ++    +   +   N ++N    C K   
Sbjct: 72  SRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCF 131

Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
               L ++M+    PD  ++N LI G  +  ++ +A  + D MV+   QP +VT+ +++ 
Sbjct: 132 AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVN 191

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G+C       AL L    M   NVK D   ++++I  LC  G +  A+ + +EM    I+
Sbjct: 192 GICRSGDTSLALDLLRK-MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIK 250

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
                Y+SL+  L KAG+ N+   +LK+M  R   PN +T+N L+  F KE   + A  +
Sbjct: 251 SSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANEL 310

Query: 316 LDEMGDKGCKANPISYNVILGGLC 339
             EM  +G   N I+YN ++ G C
Sbjct: 311 YKEMITRGISPNIITYNTLMDGYC 334



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 131/265 (49%), Gaps = 4/265 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + + +++    R+     AL +  +M   NV+  V  ++T+++     G +D    L
Sbjct: 181 PDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISL 240

Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ ME K +     +YN L+ G   + +  D   +  +MV R + P ++TF  L+     
Sbjct: 241 FKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK 300

Query: 200 ELRVDEALKL-KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
           E ++ EA +L KE I R   + P+   + +L+ G C    LS A  + + MVR+K   D 
Sbjct: 301 EGKLQEANELYKEMITR--GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDI 358

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             ++SLI       R ++   + + + +RG   N+VTY+ L+ GFC+    + A  +  E
Sbjct: 359 VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE 418

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M   G   + ++Y ++L GLC +GK
Sbjct: 419 MVSHGVLPDVMTYGILLDGLCDNGK 443



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 107/216 (49%), Gaps = 36/216 (16%)

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFG------------TLIYGLCLELRVDE----- 205
           +V  + +DA  +F EM++ R  P+LV F              L+   C +L ++      
Sbjct: 54  IVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNI 113

Query: 206 ------------------ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
                             A  +   +M++   +PD   F +LIKGL   G++S A+ + +
Sbjct: 114 YTLNIMINCFCRCCKTCFAYSVLGKVMKL-GYEPDTTTFNTLIKGLFLEGKVSEAVVLVD 172

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
            MV +  + D   Y+S+++ + ++G  +    +L++M+ER  K +  TY+ +I   C++ 
Sbjct: 173 RMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDG 232

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +AA ++  EM  KG K++ ++YN ++ GLCK GK
Sbjct: 233 CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 268



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 96/201 (47%), Gaps = 10/201 (4%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           +V   + +  ++  + ++  ++ A ++F EM S  V   V  +  LL+     GKL++  
Sbjct: 389 LVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKAL 448

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           E+F+ ++K  +      Y  +I G     ++EDAW +F  +  + ++P ++T+  +I GL
Sbjct: 449 EIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGL 508

Query: 198 CLELRVDEA----LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           C +  + EA     K++ED        P+   + +LI+     G+L+ +  + EEM    
Sbjct: 509 CKKGSLSEANILLRKMEED-----GNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 563

Query: 254 IEMDAGIYSSLISALFKAGRK 274
              DA     +I  L  A ++
Sbjct: 564 FSADASSIKMVIDMLLSAMKR 584



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPA---ILKEMKERGCKPNSVTYNALISGFCK 305
           MV  ++  DA  Y+     + + GRK        + KEM +RG  PN++TY++LI GFCK
Sbjct: 687 MVDLELPTDAVHYAHRAGRMRRPGRKMTVVTAEELHKEMIQRGIAPNTITYSSLIDGFCK 746

Query: 306 EEDFEAAFTILDEMGDKG 323
           E   + A  +LD M  KG
Sbjct: 747 ENRLDEANQMLDLMVTKG 764


>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 418

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 137/289 (47%), Gaps = 42/289 (14%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ + ++ +V  FNTL+N  +  G LD 
Sbjct: 133 PASLYFFNILMHNFCKEGEIRL---AQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L  +M+   V PD  ++++LI+G     +++DA ++FDEM+   L P  VTF TLI 
Sbjct: 190 GFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKE----------------------------------DIMRVYNVKP 221
           G C   RVD A+++                                    D M +  +KP
Sbjct: 250 GHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKP 309

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +LI G C  G+L  A   ++ M+++ I +D   Y++LIS L + GR  +   +L
Sbjct: 310 DKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKML 369

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
           +EM   G KP   TY  +I+ FCK+ D      +L EM   G   N ++
Sbjct: 370 REMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRXGYXPNXVT 418



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 123/228 (53%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
             M    +QP + T   LI GLC E ++D+A +L ++++    + P+G  F +LI G C 
Sbjct: 195 SVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLB-NGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ +  +M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 254 NGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + +  +Y  ++ GLC++G+
Sbjct: 314 YTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGR 361


>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
 gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
          Length = 535

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 153/336 (45%), Gaps = 38/336 (11%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNV-IGFYGRARLLERA 102
           R ++   + ++  L +   F  +  +    K    +VP  +  CN+ I    +   +E A
Sbjct: 153 RRSVRSLNTLLNALVQNNRFSSVHLLFKYSKSKFGVVPN-VFTCNILIKALCKKNDVEGA 211

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
            ++FDEM S  +   V  + T+L   ++ G +   K +F ++ +    PDA +Y IL+ G
Sbjct: 212 RKVFDEMPSMGIVPNVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWLPDATTYTILMDG 271

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM------- 214
            V   R  DA KV DEM +  ++P  +T+G +I G C E +  EAL L  D++       
Sbjct: 272 YVKQGRFTDAVKVMDEMEENGVEPNDITYGVIILGYCKERKSGEALNLLNDMLEKKYIPN 331

Query: 215 ---------------RVY------------NVKPDGQVFASLIKGLCAVGELSLALGVKE 247
                          RV             N  PD  + ++LI  LC  G +  A  +  
Sbjct: 332 SALCCKVIDVLCGEGRVKEACKMWEKLLKKNCTPDNAITSTLIHWLCKEGNIWEARKLFN 391

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           E  R  I      Y++LI+ + + G   E   +  +M E+GC PN  TYN LI GF K  
Sbjct: 392 EFERGTIS-SLLTYNTLIAGMCEMGELCEAARLWDDMLEKGCVPNEFTYNMLIKGFLKVG 450

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +    +++EM DKGC  N  +Y +++ GL K GK
Sbjct: 451 KAKEVIKVVEEMLDKGCLLNESTYLILVEGLLKLGK 486



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 160/338 (47%), Gaps = 12/338 (3%)

Query: 7   RLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEM 66
           RL  + R Q++  LALQ+F          + HP   F +N   Y  II +L RA+ F+ +
Sbjct: 54  RLVAMIRRQQNLDLALQIFHYAG------KYHP--AFTHNYDTYHAIIYRLSRARAFEPV 105

Query: 67  QQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126
           + +L +L+ D+ I   E +F  VI  YG A   + AL+ F  + +F V+ +V+  NTLLN
Sbjct: 106 ESLLLELQ-DSGINCSEDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLN 164

Query: 127 PKLTCGKLDRMKELFQIMEKY--VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ 184
             +   +   +  LF+  +    V P+  + NILI        +E A KVFDEM    + 
Sbjct: 165 ALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMPSMGIV 224

Query: 185 PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
           P +VT+ T++ G      +  A ++  ++   +   PD   +  L+ G    G  + A+ 
Sbjct: 225 PNVVTYTTILGGYVSRGDMIGAKRVFGELFD-HGWLPDATTYTILMDGYVKQGRFTDAVK 283

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           V +EM  + +E +   Y  +I    K  +  E   +L +M E+   PNS     +I   C
Sbjct: 284 VMDEMEENGVEPNDITYGVIILGYCKERKSGEALNLLNDMLEKKYIPNSALCCKVIDVLC 343

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            E   + A  + +++  K C  +    + ++  LCK+G
Sbjct: 344 GEGRVKEACKMWEKLLKKNCTPDNAITSTLIHWLCKEG 381


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 154/303 (50%), Gaps = 3/303 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + +++ Y+ ++  L +A  +++   +L  +     IVP  I F  ++  + +   L+
Sbjct: 257 KGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS-REIVPNVITFNVLLDVFVKEGKLQ 315

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
            A +++ EM +  +   +  +NTL++      +L     +  +M +   SPD  ++  LI
Sbjct: 316 EANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLI 375

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G  + +R++D  KVF  + KR L    VT+  L+ G C   ++  A +L ++ M  + V
Sbjct: 376 KGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE-MVSHGV 434

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   +  L+ GLC  G+L  AL + E++ + K+++   +Y+++I  + K G+  +   
Sbjct: 435 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWN 494

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +   +  +G KPN +TY  +ISG CK+     A  +L +M + G   N  +YN ++    
Sbjct: 495 LFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHL 554

Query: 340 KDG 342
           +DG
Sbjct: 555 RDG 557



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 147/300 (49%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEII-FCNVIGFYGRARLLERALQ 104
           +++ Y+ I+  + R+        +L +++   R V  ++  +  +I    R   ++ A+ 
Sbjct: 192 DVVTYNSIVNGICRSGDTSLALDLLRKMEE--RNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
           +F EM +  ++ +V  +N+L+      GK +    L + M  + + P+  ++N+L+   V
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 309

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              +L++A +++ EM+ R + P ++T+ TL+ G C++ R+ EA  +  D+M      PD 
Sbjct: 310 KEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML-DLMVRNKCSPDI 368

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             F SLIKG C V  +   + V   + +  +  +A  YS L+    ++G+      + +E
Sbjct: 369 VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE 428

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M   G  P+ +TY  L+ G C     E A  I +++         + Y  I+ G+CK GK
Sbjct: 429 MVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGK 488



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 124/264 (46%), Gaps = 2/264 (0%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD- 135
           +R +P  + F        R +     L    ++    +   +   N ++N    C K   
Sbjct: 82  SRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCF 141

Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
               L ++M+    PD  ++N LI G  +  ++ +A  + D MV+   QP +VT+ +++ 
Sbjct: 142 AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVN 201

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G+C       AL L    M   NVK D   ++++I  LC  G +  A+ + +EM    I+
Sbjct: 202 GICRSGDTSLALDLLRK-MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIK 260

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
                Y+SL+  L KAG+ N+   +LK+M  R   PN +T+N L+  F KE   + A  +
Sbjct: 261 SSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANEL 320

Query: 316 LDEMGDKGCKANPISYNVILGGLC 339
             EM  +G   N I+YN ++ G C
Sbjct: 321 YKEMITRGISPNIITYNTLMDGYC 344



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 131/265 (49%), Gaps = 4/265 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + + +++    R+     AL +  +M   NV+  V  ++T+++     G +D    L
Sbjct: 191 PDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISL 250

Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ ME K +     +YN L+ G   + +  D   +  +MV R + P ++TF  L+     
Sbjct: 251 FKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK 310

Query: 200 ELRVDEALKL-KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
           E ++ EA +L KE I R   + P+   + +L+ G C    LS A  + + MVR+K   D 
Sbjct: 311 EGKLQEANELYKEMITR--GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDI 368

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             ++SLI       R ++   + + + +RG   N+VTY+ L+ GFC+    + A  +  E
Sbjct: 369 VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE 428

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M   G   + ++Y ++L GLC +GK
Sbjct: 429 MVSHGVLPDVMTYGILLDGLCDNGK 453



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 107/216 (49%), Gaps = 36/216 (16%)

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFG------------TLIYGLCLELRVDE----- 205
           +V  + +DA  +F EM++ R  P+LV F              L+   C +L ++      
Sbjct: 64  IVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNI 123

Query: 206 ------------------ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
                             A  +   +M++   +PD   F +LIKGL   G++S A+ + +
Sbjct: 124 YTLNIMINCFCRCCKTCFAYSVLGKVMKL-GYEPDTTTFNTLIKGLFLEGKVSEAVVLVD 182

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
            MV +  + D   Y+S+++ + ++G  +    +L++M+ER  K +  TY+ +I   C++ 
Sbjct: 183 RMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDG 242

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +AA ++  EM  KG K++ ++YN ++ GLCK GK
Sbjct: 243 CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 96/201 (47%), Gaps = 10/201 (4%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           +V   + +  ++  + ++  ++ A ++F EM S  V   V  +  LL+     GKL++  
Sbjct: 399 LVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKAL 458

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           E+F+ ++K  +      Y  +I G     ++EDAW +F  +  + ++P ++T+  +I GL
Sbjct: 459 EIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGL 518

Query: 198 CLELRVDEA----LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           C +  + EA     K++ED        P+   + +LI+     G+L+ +  + EEM    
Sbjct: 519 CKKGSLSEANILLRKMEED-----GNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 573

Query: 254 IEMDAGIYSSLISALFKAGRK 274
              DA     +I  L  A ++
Sbjct: 574 FSADASSIKMVIDMLLSAMKR 594


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 129/284 (45%), Gaps = 35/284 (12%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDAC 153
           R  +    +  +  M S  VQ  +  +N ++N     G +   + + + + E  +SPD  
Sbjct: 192 RLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTF 251

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL---- 209
           +Y  +I G      L+ A +VF++M K   +P  VT+ TLI GLC   RV+EA  L    
Sbjct: 252 TYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREM 311

Query: 210 ------------------------KEDIMRVY------NVKPDGQVFASLIKGLCAVGEL 239
                                    ED  R++        +P+   + +LI GLC  G L
Sbjct: 312 ILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLL 371

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
            +A+G+   M RD +  +   Y++LI+ L +  R      +L  M   GC PN VTYN +
Sbjct: 372 KVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEM 431

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I G+C   D + A  +++ M  +G  AN ++YN I+ G C  G 
Sbjct: 432 IKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGN 475



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 129/264 (48%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    +  +I     + LL+ A+ +F  MS   V      +N L+N  +   ++     +
Sbjct: 353 PNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVV 412

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
             +M +   SP+  +YN +I G  +    + A  V + M++R     LVT+ T+I G C 
Sbjct: 413 LNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCD 472

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
                 AL++  D+MR    KPD   +  LI G C + ++  A G+  EMV D +  +  
Sbjct: 473 SGNTTSALRIL-DLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEV 531

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI    K  + +   ++L+ MK  GC+PN  TYN LI G  K+ +F  A  +   M
Sbjct: 532 TYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVM 591

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
            ++G   N ++Y  ++ GLCK+G 
Sbjct: 592 IEEGIFPNVVTYTAMIDGLCKNGS 615



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 154/338 (45%), Gaps = 46/338 (13%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NLL Y+ +I  L +     + + I+ ++  ++ + P    + ++I  + R   L+ ALQ+
Sbjct: 214 NLLIYNAVINALCKDGNVADAETIMKKV-FESEMSPDTFTYTSMILGHCRKHDLDSALQV 272

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDA--CSYNILI--- 159
           F++M+    +     ++TL+N     G+++   +L + M  + + P A  C+  I+    
Sbjct: 273 FNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCD 332

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR---- 215
            GC      EDAW++F +M  +  +P + T+  LI GLC+   +  A+ L   + R    
Sbjct: 333 MGCY-----EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVF 387

Query: 216 ----VYNV--------------------------KPDGQVFASLIKGLCAVGELSLALGV 245
                YN                            P+   +  +IKG C +G+   A+ V
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
              M++     +   Y+++I     +G       IL  M++ GCKP+  +Y  LI GFCK
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               E+AF + +EM D G   N ++Y  ++ G CKD K
Sbjct: 508 ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 545



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 115/274 (41%), Gaps = 35/274 (12%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           ++A+ + + M        +  +NT++      G       +  +M +    PD  SY  L
Sbjct: 442 KKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTEL 501

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR--- 215
           I G     ++E A+ +F+EMV   L P  VT+  LI G C + ++D A  L E + R   
Sbjct: 502 ICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 561

Query: 216 -----VYNVK--------------------------PDGQVFASLIKGLCAVGELSLALG 244
                 YNV                           P+   + ++I GLC  G  SLAL 
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           +  +M+      +   YSSLI AL + G+  E   +  E++  G  P+ +TY  +I  + 
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
                E AF  L  M   GC+    +Y V++ GL
Sbjct: 682 MSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL 715



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 140/308 (45%), Gaps = 34/308 (11%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLER-- 101
           R N+  Y+++I  L +   F   +++        +++ +E IF NV+ +      L +  
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEEL-------CKVMIEEGIFPNVVTYTAMIDGLCKNG 614

Query: 102 ----ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYN 156
               AL+MF++M        +  +++L+      GK++  + LF  +E++ + PD  +Y 
Sbjct: 615 STSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYV 674

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            +I   ++S ++E A+     M+K   QPTL T+G LI GL      +E L   + +  +
Sbjct: 675 KMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL-----KNEYLLADQRLAAL 729

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG----IYSSLISALFKAG 272
            +V P+           C+ G  +        M     E+D G    + ++L+S L  AG
Sbjct: 730 PDVVPN-----------CSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAG 778

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           R  E   +L  M  +G  P+   YN+L+    +  + + A  +   M  +GC+ +   Y 
Sbjct: 779 RWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYK 838

Query: 333 VILGGLCK 340
            ++  LC+
Sbjct: 839 ELICALCQ 846



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 70/119 (58%)

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +++L+  L  +G  +  +     M+ + ++ +  IY+++I+AL K G   +   I+K++
Sbjct: 182 AYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKV 241

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            E    P++ TY ++I G C++ D ++A  + ++M  +GC+ N ++Y+ ++ GLC  G+
Sbjct: 242 FESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGR 300



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 108/270 (40%), Gaps = 30/270 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NLL Y  +I  LG+    +E + +  +L+    ++P EI +  +I  Y  +  +E A   
Sbjct: 634 NLLTYSSLIRALGQEGKVEEAENLFAELERHG-LIPDEITYVKMIEAYIMSGKVEHAFNF 692

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PDA---CSYNILIH 160
              M     Q T+  +  L+           +K  + + ++ ++  PD    CS+     
Sbjct: 693 LGRMIKAGCQPTLWTYGVLIKG---------LKNEYLLADQRLAALPDVVPNCSFGYQTT 743

Query: 161 G----CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
                 V+S +L +        V+  L   L T G          R  EA +L   ++  
Sbjct: 744 DQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAG----------RWFEANELLGSMIS- 792

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             + PD + + SL+  L  V  + LA+GV + M     E+    Y  LI AL +  R+ E
Sbjct: 793 QGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKE 852

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKE 306
                + M  R   P+ V    LI G  ++
Sbjct: 853 ARITFENMLMRTWNPDDVVQAVLIDGLLRD 882


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 150/293 (51%), Gaps = 3/293 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL  Y+ +I  L +    +E  ++L  +  +  + P ++ +  +I  +GR   L+ A   
Sbjct: 364 NLFVYNSMINSLCKTGKLEE-AELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYY 422

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           F++M    +  TV  +N+++N +   GK+   + LF ++++K + P   +Y  LI G   
Sbjct: 423 FNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCK 482

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +  A+K++ EM  + + P  VTF  LI GLC   ++ EA KL ++++ +  + P+  
Sbjct: 483 DGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVEL-KILPNEV 541

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LI+G C  G  + A  + +EM++  +  D   Y  LI+ L   GR +E    + ++
Sbjct: 542 TYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDL 601

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +  + + + Y AL+ GFCKE   + A     EM  +G + + +SY V++ G
Sbjct: 602 HHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISG 654



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 152/305 (49%), Gaps = 5/305 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + +L+ Y  ++  L R + F+   +++ ++  +   VP E     +I    +   +E
Sbjct: 289 KGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMI-ELGYVPSEAAVSGLIEGLIKMGSIE 347

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            A ++ +++    V   +  +N+++N     GKL+  + LF +M E+ ++P+  +Y ILI
Sbjct: 348 GAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILI 407

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA-LKLKEDIMRVYN 218
            G     +L+ A+  F++M++  +  T+ ++ ++I   C   ++  A L  KE + +   
Sbjct: 408 DGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDK--G 465

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           +KP    + SLI G C  G +  A  +  EM    I  +   +++LI  L +  +  E  
Sbjct: 466 LKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEAS 525

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +  EM E    PN VTYN LI G C+E +   AF +LDEM  KG   +  +Y  ++ GL
Sbjct: 526 KLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGL 585

Query: 339 CKDGK 343
           C  G+
Sbjct: 586 CSTGR 590



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 133/273 (48%), Gaps = 2/273 (0%)

Query: 72  QLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131
            L  D  ++P+      ++    R R   + L++FD + +  V+     +  ++      
Sbjct: 179 NLMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCEL 238

Query: 132 GKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
              ++ KE+    E    S    +YN+ I+G   S+R+ +A +V   + ++ L+  LVT+
Sbjct: 239 KDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTY 298

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
            TL+ GLC     +  +++ ++++ +  V P     + LI+GL  +G +  A  +  ++ 
Sbjct: 299 CTLVLGLCRIQEFEVGMEMMDEMIELGYV-PSEAAVSGLIEGLIKMGSIEGAFELLNKVG 357

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
           +  +  +  +Y+S+I++L K G+  E   +   M ERG  PN VTY  LI GF +    +
Sbjct: 358 KLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLD 417

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            AF   ++M + G  A   SYN ++   CK GK
Sbjct: 418 VAFYYFNKMIECGISATVYSYNSMINCQCKFGK 450



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 139/295 (47%), Gaps = 19/295 (6%)

Query: 54  ITKLGRA-KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           I K+  A K+FDEM ++        +I+P E+ +  +I  + R     RA ++ DEM   
Sbjct: 518 INKMAEASKLFDEMVEL--------KILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKK 569

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDA 171
            +      +  L+    + G++   KE    +  K+   D   Y  L+ G     R+++A
Sbjct: 570 GLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEA 629

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN---VKPDGQVFAS 228
                EMV R LQ  LV++  LI G      +++  ++  +++R  +   ++PD  ++  
Sbjct: 630 LVARQEMVGRGLQMDLVSYAVLISG-----ALNQNDRILFELLREMHGKGMQPDNVIYTI 684

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G    G L  A      M+ +    ++  Y++L++ LFKAG  NE   + K M    
Sbjct: 685 LIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGE 744

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             PN +TY   +    KE + E A  + + M  +G  AN ++YN+++ G C+ GK
Sbjct: 745 AIPNHITYGCFLDHLTKEGNMENALQLHNAM-LQGSFANTVTYNILIRGYCQIGK 798



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 128/294 (43%), Gaps = 3/294 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L       E ++ ++ L H  + + +      + GF    R+ E AL    EM
Sbjct: 578 YRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKE-ALVARQEM 636

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
               +QM +  +  L++  L        + L ++  K + PD   Y ILI G + S  L+
Sbjct: 637 VGRGLQMDLVSYAVLISGALNQNDRILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLK 696

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
            A++ +  M+     P  VT+  L+ GL     V+EA KL    M V    P+   +   
Sbjct: 697 KAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEA-KLLFKRMLVGEAIPNHITYGCF 755

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           +  L   G +  AL +   M++     +   Y+ LI    + G+  E   +L  M   G 
Sbjct: 756 LDHLTKEGNMENALQLHNAMLQGSFA-NTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGM 814

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            P+ +TY+  I  +CK  + +AA  + + M  +G K + + +N ++   C +G+
Sbjct: 815 VPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGE 868



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 100/205 (48%), Gaps = 1/205 (0%)

Query: 138 KELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           +  F+  +KY    +  +++LI   V ++R+ D   V + M    L P + T   L+  L
Sbjct: 141 ENFFESYKKYKFSSSSGFDMLIQHYVQNKRVMDGVLVVNLMRDYGLLPEVRTLSALLNAL 200

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
               +  + L+L + ++    VKPD  ++  ++K LC + + + A  +  +   +   + 
Sbjct: 201 ARIRKFRQVLELFDTLVNA-GVKPDCYIYTVVVKCLCELKDFNKAKEIINQAEGNGCSLS 259

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+  I+ L K+ R  E   + + + E+G K + VTY  L+ G C+ ++FE    ++D
Sbjct: 260 IVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMMD 319

Query: 318 EMGDKGCKANPISYNVILGGLCKDG 342
           EM + G   +  + + ++ GL K G
Sbjct: 320 EMIELGYVPSEAAVSGLIEGLIKMG 344



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 112/243 (46%), Gaps = 5/243 (2%)

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM--EKYVSPDACSYNILIH 160
            ++  EM    +Q     +  L++  +  G L +  E + IM  E YV P++ +Y  L++
Sbjct: 664 FELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYV-PNSVTYTALVN 722

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G   +  + +A  +F  M+     P  +T+G  +  L  E  ++ AL+L   +++     
Sbjct: 723 GLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQ--GSF 780

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
            +   +  LI+G C +G+   A  + + M+   +  D   YS+ I    K G  +    +
Sbjct: 781 ANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDM 840

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            + M +RG KP+ V +N LI   C   + + A  + ++M  +G K    +Y+ ++  L +
Sbjct: 841 WECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLMVQLAQ 900

Query: 341 DGK 343
             +
Sbjct: 901 RAR 903



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 1/194 (0%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           VP  + +  ++    +A  +  A  +F  M           +   L+     G ++   +
Sbjct: 711 VPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQ 770

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L   M +    +  +YNILI G     + ++A K+ D M+   + P  +T+ T IY  C 
Sbjct: 771 LHNAMLQGSFANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCK 830

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
              VD A+ + E +++   +KPD  VF  LI   C  GEL  AL ++ +M+   ++    
Sbjct: 831 RGNVDAAMDMWECMLQ-RGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQS 889

Query: 260 IYSSLISALFKAGR 273
            Y SL+  L +  R
Sbjct: 890 TYHSLMVQLAQRAR 903



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/109 (22%), Positives = 55/109 (50%), Gaps = 1/109 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
            + A ++ D M    +      ++T +      G +D   ++++ M ++ + PD   +N 
Sbjct: 799 FQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNF 858

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA 206
           LIH C ++  L+ A ++ ++M+ R L+PT  T+ +L+  L    R+ + 
Sbjct: 859 LIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLMVQLAQRARLTQV 907


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 154/303 (50%), Gaps = 3/303 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + +++ Y+ ++  L +A  +++   +L  +     IVP  I F  ++  + +   L+
Sbjct: 257 KGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS-REIVPNVITFNVLLDVFVKEGKLQ 315

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
            A +++ EM +  +   +  +NTL++      +L     +  +M +   SPD  ++  LI
Sbjct: 316 EANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLI 375

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G  + +R++D  KVF  + KR L    VT+  L+ G C   ++  A +L ++ M  + V
Sbjct: 376 KGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE-MVSHGV 434

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   +  L+ GLC  G+L  AL + E++ + K+++   +Y+++I  + K G+  +   
Sbjct: 435 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWN 494

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +   +  +G KPN +TY  +ISG CK+     A  +L +M + G   N  +YN ++    
Sbjct: 495 LFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHL 554

Query: 340 KDG 342
           +DG
Sbjct: 555 RDG 557



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 148/304 (48%), Gaps = 13/304 (4%)

Query: 46  NLLHYDLIITKLGRAK----MFDEMQQILHQLKHDTRIVPKEII-FCNVIGFYGRARLLE 100
           +++ Y+ I+  + R+      FD ++      K + R V  ++  +  +I    R   ++
Sbjct: 192 DMVTYNSIVNGICRSGDTSLAFDMLR------KMEERNVKADVFTYSTIIDSLCRDGCID 245

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            A+ +F EM +  ++ +V  +N+L+      GK +    L + M  + + P+  ++N+L+
Sbjct: 246 AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 305

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
              V   +L++A +++ EM+ R + P ++T+ TL+ G C++ R+ EA  +  D+M     
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML-DLMVRNKC 364

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   F SLIKG C V  +   + V   + +  +  +A  YS L+    ++G+      
Sbjct: 365 SPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEE 424

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + +EM   G  P+ +TY  L+ G C     E A  I +++         + Y  I+ G+C
Sbjct: 425 LFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMC 484

Query: 340 KDGK 343
           K GK
Sbjct: 485 KGGK 488



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 130/265 (49%), Gaps = 4/265 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + + +++    R+     A  M  +M   NV+  V  ++T+++     G +D    L
Sbjct: 191 PDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISL 250

Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ ME K +     +YN L+ G   + +  D   +  +MV R + P ++TF  L+     
Sbjct: 251 FKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK 310

Query: 200 ELRVDEALKL-KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
           E ++ EA +L KE I R   + P+   + +L+ G C    LS A  + + MVR+K   D 
Sbjct: 311 EGKLQEANELYKEMITR--GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDI 368

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             ++SLI       R ++   + + + +RG   N+VTY+ L+ GFC+    + A  +  E
Sbjct: 369 VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE 428

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M   G   + ++Y ++L GLC +GK
Sbjct: 429 MVSHGVLPDVMTYGILLDGLCDNGK 453



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 126/268 (47%), Gaps = 10/268 (3%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD- 135
           +R +P  + F        R +     L    ++    +   +   N ++N    C K   
Sbjct: 82  SRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCF 141

Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
               L ++M+    PD  ++N LI+G  +  ++  A  + D MV+   QP +VT+ +++ 
Sbjct: 142 AYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVN 201

Query: 196 GLC----LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           G+C      L  D   K++E      NVK D   ++++I  LC  G +  A+ + +EM  
Sbjct: 202 GICRSGDTSLAFDMLRKMEE-----RNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMET 256

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
             I+     Y+SL+  L KAG+ N+   +LK+M  R   PN +T+N L+  F KE   + 
Sbjct: 257 KGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQE 316

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLC 339
           A  +  EM  +G   N I+YN ++ G C
Sbjct: 317 ANELYKEMITRGISPNIITYNTLMDGYC 344



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 106/216 (49%), Gaps = 36/216 (16%)

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFG------------TLIYGLCLELRVDE----- 205
           +V  + +DA  +F EM++ R  P LV F              L+   C +L ++      
Sbjct: 64  IVDIKKDDAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNI 123

Query: 206 ------------------ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
                             A  +   +M++   +PD   F +LI GLC  G++S A+ + +
Sbjct: 124 YTLNIMINCFCRCCKTCFAYSVLGKVMKL-GYEPDTTTFNTLINGLCLEGKVSKAVVLVD 182

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
            MV +  + D   Y+S+++ + ++G  +    +L++M+ER  K +  TY+ +I   C++ 
Sbjct: 183 RMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDG 242

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +AA ++  EM  KG K++ ++YN ++ GLCK GK
Sbjct: 243 CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 137/284 (48%), Gaps = 18/284 (6%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           T +VP    +  +I  + +A ++++A    DEM     + TV  + TL++  L   K+  
Sbjct: 518 TGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSV 577

Query: 137 MKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM--------------VKR 181
             ELF++M  K   P+  +Y  LI G   S  +E A +++  M              +K 
Sbjct: 578 ANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKN 637

Query: 182 RL--QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
            +  +P +VT+G L+ GLC   +V +A  L E  M V   +P+  V+ +LI G C   +L
Sbjct: 638 NVAEKPNVVTYGALVDGLCKAHKVKDARDLLE-TMFVDGCEPNTIVYDALIDGFCKAAKL 696

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A  V  +MV      +   YSSLI  LFK  R +    +L +M E  C PN V Y  +
Sbjct: 697 DEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEM 756

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I G  K    + A+ ++  M +KGCK N ++Y  ++ G  K GK
Sbjct: 757 IDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGK 800



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 132/312 (42%), Gaps = 19/312 (6%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK----EIIFCNVIGFYGRARL 98
           F  N + Y+ +I+ L  A  F+E    L++++  T  +P      I+ C  +      + 
Sbjct: 304 FVPNTILYNKMISGLCEASFFEEAMDFLNRMR-STSCIPNVQTYRILLCGCLN----KKQ 358

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNI 157
           L R  ++   M +     +   FN+L++            +L + MEK    P    YNI
Sbjct: 359 LGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNI 418

Query: 158 LIHGCVVSR-------RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           LI G + S          E A K ++EM+        V   +    LC   + ++A K+ 
Sbjct: 419 LI-GSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVI 477

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
            ++M    V PD   ++ +I  LC    +  A  + +EM    +  D   Y+ LI    K
Sbjct: 478 HEMMGNGFV-PDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSK 536

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
           AG   +    L EM   GC+P  VTY  LI  + K +    A  + + M  KGC  N I+
Sbjct: 537 AGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVIT 596

Query: 331 YNVILGGLCKDG 342
           Y  ++ G CK G
Sbjct: 597 YTALIDGYCKSG 608



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 128/274 (46%), Gaps = 18/274 (6%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSF----NVQMTVKFFNTLLNPK--LTCGKL 134
           P  I +  +I  Y ++  +E+A Q++  M       +V M  K  N +      +T G L
Sbjct: 592 PNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGAL 651

Query: 135 -------DRMKELFQIMEKYV----SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
                   ++K+   ++E        P+   Y+ LI G   + +L++A +VF +MV+R  
Sbjct: 652 VDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGY 711

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P + T+ +LI  L  + R+D  LK+   ++   +  P+  ++  +I GL  V +   A 
Sbjct: 712 NPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLE-NSCAPNIVIYTEMIDGLSKVAKTDEAY 770

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            +   M     + +   Y+++I    KAG+ ++   + +EM  +GC PN VTY  LI+  
Sbjct: 771 KLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHC 830

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           C     + A+ +L+EM       +  SY  ++ G
Sbjct: 831 CATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEG 864



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 112/273 (41%), Gaps = 12/273 (4%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           VP  I++  +I     A   E A+   + M S +    V+ +  LL   L   +L R K 
Sbjct: 305 VPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKR 364

Query: 140 LFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           +  +M  +   P    +N L+H    S     A+K+  +M K   +P  V +  LI  +C
Sbjct: 365 ILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSIC 424

Query: 199 L--ELRVDEALKLKEDIMRVYN-VKPDGQVF-----ASLIKGLCAVGELSLALGVKEEMV 250
              EL      +L E   + YN +   G V       S  + LC  G+   A  V  EM+
Sbjct: 425 SGGELPGPVTFELAE---KAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMM 481

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
            +    D   YS +I  L  A R      + KEMK  G  P+  TY  LI  F K    +
Sbjct: 482 GNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIK 541

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            A   LDEM   GC+   ++Y  ++    K  K
Sbjct: 542 QAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKK 574



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 8/209 (3%)

Query: 137 MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           ++EL ++ +    P   +YN L+   + + +L+ A  V  EM +  L     T G     
Sbjct: 226 LEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQA 285

Query: 197 LCLELRVDEALKL--KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
           LC   +  EAL L  KED +      P+  ++  +I GLC       A+     M     
Sbjct: 286 LCKVGKWREALSLIEKEDFV------PNTILYNKMISGLCEASFFEEAMDFLNRMRSTSC 339

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
             +   Y  L+       +      IL  M   GC P+   +N+L+  +CK +DF  A+ 
Sbjct: 340 IPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYK 399

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +L +M    CK   + YN+++G +C  G+
Sbjct: 400 LLKKMEKCECKPGYVVYNILIGSICSGGE 428



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 131/301 (43%), Gaps = 13/301 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + YD +I    +A   DE Q++ H++  +    P    + ++I    + + L+  L++
Sbjct: 679 NTIVYDALIDGFCKAAKLDEAQEVFHKMV-ERGYNPNVYTYSSLIDRLFKDKRLDLVLKV 737

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
             +M   +    +  +  +++      K D   +L  +M EK   P+  +Y  +I G   
Sbjct: 738 LSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGK 797

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + +++   ++F EM  +   P  VT+  LI   C    +DEA  L E++ + Y  K    
Sbjct: 798 AGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSS 857

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  +I+G     E  L+LG+ EE+ ++       +Y  LI    KAGR       L+  
Sbjct: 858 -YCKVIEGY--KREFILSLGLLEEVEKNGSAPTILLYKVLIDNFVKAGR---LEVALELH 911

Query: 285 KERGCKPNSVT-----YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           KE      S+T     Y +LI  F      + AF +  +M   G   +  ++  +L GL 
Sbjct: 912 KEVISASMSMTAKKNLYTSLIYSFSYASKIDHAFELFYDMIRDGVIPDLGTFVHLLMGLI 971

Query: 340 K 340
           +
Sbjct: 972 R 972



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 103/233 (44%), Gaps = 5/233 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L +    DE  +++  ++ +    P  + +  +I  +G+A  +++ L++
Sbjct: 749 NIVIYTEMIDGLSKVAKTDEAYKLMLMME-EKGCKPNVVTYTAMIDGFGKAGKVDKCLEL 807

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILIHGCVV 164
           F EM S         +  L+N     G LD    L + M++   P    SY  +I G   
Sbjct: 808 FREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEG--Y 865

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-KEDIMRVYNVKPDG 223
            R    +  + +E+ K    PT++ +  LI       R++ AL+L KE I    ++    
Sbjct: 866 KREFILSLGLLEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKK 925

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
            ++ SLI       ++  A  +  +M+RD +  D G +  L+  L +  R  E
Sbjct: 926 NLYTSLIYSFSYASKIDHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEE 978



 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI----LKEMKERGCKPNSVTYNALI 300
           V EE +R+    D  +   L++ L +   +N    +    L  +K+ G KP  +TYNAL+
Sbjct: 189 VPEEFLREIRGDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALV 248

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             F + +  + A  +  EM + G   +  +       LCK GK
Sbjct: 249 QVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGK 291


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 167/373 (44%), Gaps = 61/373 (16%)

Query: 10  CLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 69
           C     KD      L +    NP+D        + YN+L Y L   K       DE +++
Sbjct: 241 CKSGRMKDALGIKALMERNGCNPDD--------WTYNILIYGLCGEKP------DEAEEL 286

Query: 70  LHQLKHDTRI---VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126
           L+    D  +    P  I F N+I  Y +A  ++ AL++   M S N ++ ++ +  L+N
Sbjct: 287 LN----DAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLIN 342

Query: 127 ------------------------PKLT-----------CGKLDRMKELFQIME-KYVSP 150
                                   P +             GK+    E+F++ME +   P
Sbjct: 343 VLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRP 402

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           +A +Y+ LI+G +  ++L  A  +  +M +  + P ++T+ TLI G C +   D A +L 
Sbjct: 403 NAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLF 462

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
           E +M    + PD Q +  L   LC  G    A      +VR  + +    Y+SL+    K
Sbjct: 463 E-MMEQNGLTPDEQAYNVLTHALCKSGRAEEAYSF---LVRKGVVLTKVTYTSLVDGFSK 518

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
           AG  +    ++++M   GCK +S TY+ L+   CK++    A +ILD+M   G K N ++
Sbjct: 519 AGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVA 578

Query: 331 YNVILGGLCKDGK 343
           Y +I+  + K+GK
Sbjct: 579 YTIIISEMIKEGK 591



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 156/340 (45%), Gaps = 37/340 (10%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           PL   R N   Y ++I  L   +   E   +L  +  D   +        + G     R+
Sbjct: 152 PLMGCRRNEYSYTILIQGLCETRCVREALVLLVMMVQDGCSLNLHTYTLLIKGLCKEGRI 211

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
              A ++ +EM    V  +V  +N +++     G++     +  +ME+   +PD  +YNI
Sbjct: 212 -HGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNI 270

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM--- 214
           LI+G +   + ++A ++ ++ + R   PT++TF  +I G C   R+D+AL++K  ++   
Sbjct: 271 LIYG-LCGEKPDEAEELLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSN 329

Query: 215 -----RVYNV--------------------------KPDGQVFASLIKGLCAVGELSLAL 243
                + Y V                           P+  ++ S+I G C VG++  AL
Sbjct: 330 CKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAAL 389

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            V   M  +    +A  YSSLI  L +  + ++  A++ +M+E G  P  +TY  LI G 
Sbjct: 390 EVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQ 449

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           CK+ +F+ AF + + M   G   +  +YNV+   LCK G+
Sbjct: 450 CKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGR 489



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 148/314 (47%), Gaps = 9/314 (2%)

Query: 25  FKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI 84
           FK      ++  A+ L P   N++ Y  II    +        ++   ++H+    P   
Sbjct: 350 FKEAKETVSEMFANGLAP---NVVIYTSIIDGYCKVGKVGAALEVFRLMEHEG-CRPNAW 405

Query: 85  IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM 144
            + ++I    + + L +A+ +  +M    +   V  + TL+  +    + D    LF++M
Sbjct: 406 TYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMM 465

Query: 145 EKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
           E+  ++PD  +YN+L H    S R E+A+     +V++ +  T VT+ +L+ G       
Sbjct: 466 EQNGLTPDEQAYNVLTHALCKSGRAEEAYSF---LVRKGVVLTKVTYTSLVDGFSKAGNT 522

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
           D A  L E ++     K D   ++ L++ LC   +L+ AL + ++M    ++ +   Y+ 
Sbjct: 523 DFAAVLIEKMVN-EGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTI 581

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +IS + K G+ +   ++  EM   G KP++ TY   IS +CK    E A  ++ EM   G
Sbjct: 582 IISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDG 641

Query: 324 CKANPISYNVILGG 337
              + ++YNV + G
Sbjct: 642 VAPDVVTYNVFING 655



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 137/314 (43%), Gaps = 26/314 (8%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHD---TRIVPKEIIFCNVIGFYGRARLLERALQMF 106
           Y +++  L + K  +E   IL Q+        IV   II   +I    +    + A  MF
Sbjct: 544 YSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMI----KEGKHDHAKSMF 599

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVVS 165
           +EM S   + +   +   ++     G+++  + L   ME+  V+PD  +YN+ I+GC   
Sbjct: 600 NEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHM 659

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLI----------------YGLCLELRVDEALKL 209
             ++ A+     M+    +P   T+  L+                 G+   + +D   +L
Sbjct: 660 GYMDRAFSTLKRMIDASCEPNYWTYWILLKHFLKMSLVDAHYVDTSGMWNWIELDTVWQL 719

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            E +++ + + P    ++S+I G C    L  A  + + M    I  +  IY+ LI    
Sbjct: 720 LERMVK-HGLNPTAVTYSSIIAGFCKATRLEEACVLFDHMRGKDISPNEEIYTMLIKCCC 778

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL-DEMGDKGCKANP 328
                 +  + + +M E G +P+  +Y+ LI G C E D++ A ++  D +G +    N 
Sbjct: 779 DIKLFGKAVSFVTDMIEFGFQPHLESYHYLIVGLCDEGDYDKAKSLFCDLLGMEDYNHNE 838

Query: 329 ISYNVILGGLCKDG 342
           +++ ++  GL K G
Sbjct: 839 VAWKILNDGLLKAG 852



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 94/192 (48%), Gaps = 6/192 (3%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           SY ILI G   +R + +A  +   MV+      L T+  LI GLC E R+  A ++ E+ 
Sbjct: 162 SYTILIQGLCETRCVREALVLLVMMVQDGCSLNLHTYTLLIKGLCKEGRIHGARRVLEE- 220

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M +  V P    + ++I G C  G +  ALG+K  M R+    D   Y+ LI  L   G 
Sbjct: 221 MPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILIYGL--CGE 278

Query: 274 K-NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           K +E   +L +   RG  P  +T+  +I+G+CK E  + A  +   M    CK +  +Y 
Sbjct: 279 KPDEAEELLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYG 338

Query: 333 VILGGLCKDGKC 344
           V++  L K  KC
Sbjct: 339 VLINVLIK--KC 348



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 129/336 (38%), Gaps = 66/336 (19%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           L   + N++ Y +II+++ +    D  + + +++       P    +   I  Y +   +
Sbjct: 569 LSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGH-KPSATTYTVFISSYCKIGQI 627

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSY 155
           E A  +  EM    V   V  +N  +N    CG +  M   F  +++ +     P+  +Y
Sbjct: 628 EEAEHLIGEMERDGVAPDVVTYNVFING---CGHMGYMDRAFSTLKRMIDASCEPNYWTY 684

Query: 156 NILI----------------HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
            IL+                 G      L+  W++ + MVK  L PT VT+ ++I G C 
Sbjct: 685 WILLKHFLKMSLVDAHYVDTSGMWNWIELDTVWQLLERMVKHGLNPTAVTYSSIIAGFCK 744

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R++EA  L  D MR  ++ P+ +++  LIK  C +     A+    +M+    +    
Sbjct: 745 ATRLEEACVLF-DHMRGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPHLE 803

Query: 260 IYSSLI------------------------------------SALFKAGRKNEFPAILKE 283
            Y  LI                                      L KAG  +    +L  
Sbjct: 804 SYHYLIVGLCDEGDYDKAKSLFCDLLGMEDYNHNEVAWKILNDGLLKAGHVDFCSQLLSA 863

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           M+ R C+ +S TY+ +          EA+ +++ E+
Sbjct: 864 MENRHCQIDSETYSMVTDNI-----HEASGSVVSEL 894



 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +L  M   GC+ N  +Y  LI G C+      A  +L  M   GC  N  +Y +++ GLC
Sbjct: 147 LLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLVMMVQDGCSLNLHTYTLLIKGLC 206

Query: 340 KDGK 343
           K+G+
Sbjct: 207 KEGR 210


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 129/284 (45%), Gaps = 35/284 (12%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDAC 153
           R  +    +  +  M S  VQ  +  +N ++N     G +   + + + + E  +SPD  
Sbjct: 192 RLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTF 251

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL---- 209
           +Y  +I G      L+ A +VF++M K   +P  VT+ TLI GLC   RV+EA  L    
Sbjct: 252 TYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREM 311

Query: 210 ------------------------KEDIMRVY------NVKPDGQVFASLIKGLCAVGEL 239
                                    ED  R++        +P+   + +LI GLC  G L
Sbjct: 312 ILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGIL 371

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
            +A+G+   M RD +  +   Y++LI+ L +  R      +L  M   GC PN VTYN +
Sbjct: 372 KVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEM 431

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I G+C   D + A  +++ M  +G  AN ++YN I+ G C  G 
Sbjct: 432 IKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGN 475



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 129/264 (48%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    +  +I     + +L+ A+ +F  MS   V      +N L+N  +   ++     +
Sbjct: 353 PNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVV 412

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
             +M +   SP+  +YN +I G  +    + A  V + M++R     LVT+ T+I G C 
Sbjct: 413 LNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCD 472

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
                 AL++  D+MR    KPD   +  LI G C + ++  A G+  EMV D +  +  
Sbjct: 473 SGNTTSALRIL-DLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEV 531

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI    K  + +   ++L+ MK  GC+PN  TYN LI G  K+ +F  A  +   M
Sbjct: 532 TYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVM 591

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
            ++G   N ++Y  ++ GLCK+G 
Sbjct: 592 IEEGIFPNVVTYTAMIDGLCKNGS 615



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 154/338 (45%), Gaps = 46/338 (13%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NLL Y+ +I  L +     + + I+ ++  ++ + P    + ++I  + R   L+ ALQ+
Sbjct: 214 NLLIYNAVINALCKDGNVADAETIMKKV-FESEMSPDTFTYTSMILGHCRKHDLDSALQV 272

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDA--CSYNILI--- 159
           F++M+    +     ++TL+N     G+++   +L + M  + + P A  C+  I+    
Sbjct: 273 FNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCD 332

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR---- 215
            GC      EDAW++F +M  +  +P + T+  LI GLC+   +  A+ L   + R    
Sbjct: 333 MGCY-----EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVF 387

Query: 216 ----VYNV--------------------------KPDGQVFASLIKGLCAVGELSLALGV 245
                YN                            P+   +  +IKG C +G+   A+ V
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
              M++     +   Y+++I     +G       IL  M++ GCKP+  +Y  LI GFCK
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               E+AF + +EM D G   N ++Y  ++ G CKD K
Sbjct: 508 ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 545



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 115/274 (41%), Gaps = 35/274 (12%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           ++A+ + + M        +  +NT++      G       +  +M +    PD  SY  L
Sbjct: 442 KKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTEL 501

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR--- 215
           I G     ++E A+ +F+EMV   L P  VT+  LI G C + ++D A  L E + R   
Sbjct: 502 ICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 561

Query: 216 -----VYNVK--------------------------PDGQVFASLIKGLCAVGELSLALG 244
                 YNV                           P+   + ++I GLC  G  SLAL 
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           +  +M+      +   YSSLI AL + G+  E   +  E++  G  P+ +TY  +I  + 
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
                E AF  L  M   GC+    +Y V++ GL
Sbjct: 682 MSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL 715



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 140/308 (45%), Gaps = 34/308 (11%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLER-- 101
           R N+  Y+++I  L +   F   +++        +++ +E IF NV+ +      L +  
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEEL-------CKVMIEEGIFPNVVTYTAMIDGLCKNG 614

Query: 102 ----ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYN 156
               AL+MF++M        +  +++L+      GK++  + LF  +E++ + PD  +Y 
Sbjct: 615 STSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYV 674

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            +I   ++S ++E A+     M+K   QPTL T+G LI GL      +E L   + +  +
Sbjct: 675 KMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL-----KNEYLLADQRLAAL 729

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG----IYSSLISALFKAG 272
            +V P+           C+ G  +        M     E+D G    + ++L+S L  AG
Sbjct: 730 PDVVPN-----------CSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAG 778

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           R  E   +L  M  +G  P+   YN+L+    +  + + A  +   M  +GC+ +   Y 
Sbjct: 779 RWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYK 838

Query: 333 VILGGLCK 340
            ++  LC+
Sbjct: 839 ELICALCQ 846



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 70/119 (58%)

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +++L+  L  +G  +  +     M+ + ++ +  IY+++I+AL K G   +   I+K++
Sbjct: 182 AYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKV 241

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            E    P++ TY ++I G C++ D ++A  + ++M  +GC+ N ++Y+ ++ GLC  G+
Sbjct: 242 FESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGR 300



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 108/270 (40%), Gaps = 30/270 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NLL Y  +I  LG+    +E + +  +L+    ++P EI +  +I  Y  +  +E A   
Sbjct: 634 NLLTYSSLIRALGQEGKVEEAENLFAELERHG-LIPDEITYVKMIEAYIMSGKVEHAFNF 692

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PDA---CSYNILIH 160
              M     Q T+  +  L+           +K  + + ++ ++  PD    CS+     
Sbjct: 693 LGRMIKAGCQPTLWTYGVLIKG---------LKNEYLLADQRLAALPDVVPNCSFGYQTT 743

Query: 161 G----CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
                 V+S +L +        V+  L   L T G          R  EA +L   ++  
Sbjct: 744 DQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAG----------RWFEANELLGSMIS- 792

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             + PD + + SL+  L  V  + LA+GV + M     E+    Y  LI AL +  R+ E
Sbjct: 793 QGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKE 852

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKE 306
                + M  R   P+ V    LI G  ++
Sbjct: 853 ARITFENMLMRTWNPDDVVQAVLIDGLLRD 882


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 129/284 (45%), Gaps = 35/284 (12%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDAC 153
           R  +    +  +  M S  VQ  +  +N ++N     G +   + + + + E  +SPD  
Sbjct: 192 RLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTF 251

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL---- 209
           +Y  +I G      L+ A +VF++M K   +P  VT+ TLI GLC   RV+EA  L    
Sbjct: 252 TYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREM 311

Query: 210 ------------------------KEDIMRVY------NVKPDGQVFASLIKGLCAVGEL 239
                                    ED  R++        +P+   + +LI GLC  G L
Sbjct: 312 ILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLL 371

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
            +A+G+   M RD +  +   Y++LI+ L +  R      +L  M   GC PN VTYN +
Sbjct: 372 KVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEM 431

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I G+C   D + A  +++ M  +G  AN ++YN I+ G C  G 
Sbjct: 432 IKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGN 475



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 129/264 (48%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    +  +I     + LL+ A+ +F  MS   V      +N L+N  +   ++     +
Sbjct: 353 PNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVV 412

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
             +M +   SP+  +YN +I G  +    + A  V + M++R     LVT+ T+I G C 
Sbjct: 413 LNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCD 472

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
                 AL++  D+MR    KPD   +  LI G C + ++  A G+  EMV D +  +  
Sbjct: 473 SGNTTSALRIL-DLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEV 531

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI    K  + +   ++L+ MK  GC+PN  TYN LI G  K+ +F  A  +   M
Sbjct: 532 TYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVM 591

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
            ++G   N ++Y  ++ GLCK+G 
Sbjct: 592 IEEGIFPNVVTYTAMIDGLCKNGS 615



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 154/338 (45%), Gaps = 46/338 (13%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NLL Y+ +I  L +     + + I+ ++  ++ + P    + ++I  + R   L+ ALQ+
Sbjct: 214 NLLIYNAVINALCKDGNVADAETIMKKV-FESEMSPDTFTYTSMILGHCRKHDLDSALQV 272

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDA--CSYNILI--- 159
           F++M+    +     ++TL+N     G+++   +L + M  + + P A  C+  I+    
Sbjct: 273 FNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCD 332

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR---- 215
            GC      EDAW++F +M  +  +P + T+  LI GLC+   +  A+ L   + R    
Sbjct: 333 MGCY-----EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVF 387

Query: 216 ----VYNV--------------------------KPDGQVFASLIKGLCAVGELSLALGV 245
                YN                            P+   +  +IKG C +G+   A+ V
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
              M++     +   Y+++I     +G       IL  M++ GCKP+  +Y  LI GFCK
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               E+AF + +EM D G   N ++Y  ++ G CKD K
Sbjct: 508 ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 545



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 115/274 (41%), Gaps = 35/274 (12%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           ++A+ + + M        +  +NT++      G       +  +M +    PD  SY  L
Sbjct: 442 KKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTEL 501

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR--- 215
           I G     ++E A+ +F+EMV   L P  VT+  LI G C + ++D A  L E + R   
Sbjct: 502 ICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 561

Query: 216 -----VYNVK--------------------------PDGQVFASLIKGLCAVGELSLALG 244
                 YNV                           P+   + ++I GLC  G  SLAL 
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           +  +M+      +   YSSLI AL + G+  E   +  E++  G  P+ +TY  +I  + 
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
                E AF  L  M   GC+    +Y V++ GL
Sbjct: 682 MSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL 715



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 140/308 (45%), Gaps = 34/308 (11%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLER-- 101
           R N+  Y+++I  L +   F   +++        +++ +E IF NV+ +      L +  
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEEL-------CKVMIEEGIFPNVVTYTAMIDGLCKNG 614

Query: 102 ----ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYN 156
               AL+MF++M        +  +++L+      GK++  + LF  +E++ + PD  +Y 
Sbjct: 615 STSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYV 674

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            +I   ++S ++E A+     M+K   QPTL T+G LI GL      +E L   + +  +
Sbjct: 675 KMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL-----KNEYLLADQRLAAL 729

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG----IYSSLISALFKAG 272
            +V P+           C+ G  +        M     E+D G    + ++L+S L  AG
Sbjct: 730 PDVVPN-----------CSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAG 778

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           R  E   +L  M  +G  P+   YN+L+    +  + + A  +   M  +GC+ +   Y 
Sbjct: 779 RWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYK 838

Query: 333 VILGGLCK 340
            ++  LC+
Sbjct: 839 ELICALCQ 846



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 70/119 (58%)

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +++L+  L  +G  +  +     M+ + ++ +  IY+++I+AL K G   +   I+K++
Sbjct: 182 AYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKV 241

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            E    P++ TY ++I G C++ D ++A  + ++M  +GC+ N ++Y+ ++ GLC  G+
Sbjct: 242 FESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGR 300



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 108/270 (40%), Gaps = 30/270 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NLL Y  +I  LG+    +E + +  +L+    ++P EI +  +I  Y  +  +E A   
Sbjct: 634 NLLTYSSLIRALGQEGKVEEAENLFAELERHG-LIPDEITYVKMIEAYIMSGKVEHAFNF 692

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PDA---CSYNILIH 160
              M     Q T+  +  L+           +K  + + ++ ++  PD    CS+     
Sbjct: 693 LGRMIKAGCQPTLWTYGVLIKG---------LKNEYLLADQRLAALPDVVPNCSFGYQTT 743

Query: 161 G----CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
                 V+S +L +        V+  L   L T G          R  EA +L   ++  
Sbjct: 744 DQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAG----------RWFEANELLGSMIS- 792

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             + PD + + SL+  L  V  + LA+GV + M     E+    Y  LI AL +  R+ E
Sbjct: 793 QGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKE 852

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKE 306
                + M  R   P+ V    LI G  ++
Sbjct: 853 ARITFENMLMRTWNPDDVVQAVLIDGLLRD 882


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 148/303 (48%), Gaps = 3/303 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + F  +++ Y+++I  L   +      ++L QL  D   +P  I +  +I        + 
Sbjct: 166 RGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDN-CMPTVITYTILIEATIVEGGIN 224

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
            A+++ +EM +  +   +  +N ++      G ++R  EL   +  K   PD  SYNIL+
Sbjct: 225 EAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILL 284

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
              +   + ++  K+  EM  R  +P  VT+  LI  LC   R+DEA+ + + +M    +
Sbjct: 285 RAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLK-VMIEKEL 343

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   +  LI  LC  G L LA+G+ + M+ +    D   Y+++++AL K G  N+   
Sbjct: 344 TPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALE 403

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           I  +++  GC PN  +YN +IS      D   A  ++  M  KG   + I+YN ++  LC
Sbjct: 404 IFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLC 463

Query: 340 KDG 342
           +DG
Sbjct: 464 RDG 466



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 164/334 (49%), Gaps = 25/334 (7%)

Query: 29  NPNPND-------------TEAHP--LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL 73
           NPNPND              EA P  L+ + +   H   ++ +  +A  F+E    L  L
Sbjct: 35  NPNPNDGFNSRNAPKVGVSAEARPAHLQSYDFRETHLMKLLNRSCKAGKFNESLYFLECL 94

Query: 74  KHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133
            +     P  I+   +I  +   + +E+A ++ + + S + +  V  +N +++      K
Sbjct: 95  VNKG-YTPDVILCTKLIKGFFNFKNIEKASRVMEILES-HTEPDVFAYNAVISGFC---K 149

Query: 134 LDRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
           ++R++   Q++ +  +    PD  +YNI+I      R+L  A KV D+++     PT++T
Sbjct: 150 VNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVIT 209

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           +  LI    +E  ++EA+KL E+ M    + PD   + ++I+G+C  G +  A  +   +
Sbjct: 210 YTILIEATIVEGGINEAMKLLEE-MLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSL 268

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
                + D   Y+ L+ A    G+ +E   ++ EM  RGC+PN VTY+ LIS  C+    
Sbjct: 269 TSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRI 328

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + A ++L  M +K    +  SY+ ++  LCK+G+
Sbjct: 329 DEAISVLKVMIEKELTPDTYSYDPLISALCKEGR 362



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 147/296 (49%), Gaps = 7/296 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERAL 103
           ++  Y+ II  + +  M +   +++  L   ++    ++I  N++   F  + +  +   
Sbjct: 241 DMYTYNAIIRGMCKEGMVERAAELITSLT--SKGCKPDVISYNILLRAFLNQGKW-DEGE 297

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGC 162
           ++  EM S   +     ++ L++     G++D    + ++M EK ++PD  SY+ LI   
Sbjct: 298 KLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISAL 357

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
               RL+ A  + D M+     P +V + T++  LC     ++AL++    +R     P+
Sbjct: 358 CKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNK-LRGMGCPPN 416

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + ++I  L + G+ S ALG+   M+   ++ D   Y+SLIS L + G   E   +L 
Sbjct: 417 VSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLD 476

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           +M++ G +P  ++YN ++ G CK    + A  +  EM +KGC+ N  +Y +++ G+
Sbjct: 477 DMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGI 532



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 3/232 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y ++I+ L R    DE   +L ++  +  + P    +  +I    +   L+ A+ +
Sbjct: 311 NKVTYSILISSLCRFGRIDEAISVL-KVMIEKELTPDTYSYDPLISALCKEGRLDLAIGI 369

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            D M S      +  +NT+L      G  ++  E+F  +      P+  SYN +I     
Sbjct: 370 MDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWS 429

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
                 A  +   M+ + + P  +T+ +LI  LC +  V+EA+ L +D M     +P   
Sbjct: 430 CGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDD-MEQSGFRPTVI 488

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
            +  ++ GLC V  +  A+G+  EM+      +   Y  LI  +  AG + E
Sbjct: 489 SYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTE 540


>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
          Length = 547

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 148/294 (50%), Gaps = 36/294 (12%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           +++++  L RAK  ++  ++L +L+ D   +P  + + +VI  Y +A  +E A+ ++++M
Sbjct: 253 HNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDM 312

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
                                             +E    P+  +YN+LI+G   +  +E
Sbjct: 313 ----------------------------------LESGTRPNTVTYNVLINGYGKALDME 338

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
            A +++ +++ R   P +VTF +LI G C   ++D+A ++ ++ M +++++P+   F+ +
Sbjct: 339 SAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKE-MGLHHIQPNVYTFSII 397

Query: 230 IKGLCAVGELSLALGVKEEM-VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           I  LC     + AL +  E+ +R  I     IY+ +I  L K G+ +E   I+ +MKE+G
Sbjct: 398 IHSLCKQNRSAEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKG 457

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           C P+  TY  LI G C +     A T+  +M + GC+ + I+ N  +  + K G
Sbjct: 458 CHPDKYTYTILIIGHCMKGRIPEAITLFHKMVEAGCRPDNITVNSFVSCVLKAG 511



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 148/307 (48%), Gaps = 9/307 (2%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           ++P+ YN L   LI    GRA+   +   +      D    P    F  VI    R    
Sbjct: 177 IEPYAYNYLLNSLIAH--GRAQ---DAVALFESWIQDGLYSPDVWSFNVVIKGVCRMGNF 231

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYNI 157
           ++AL++ + M+ F         N L++      ++++  E+ + +++     P+A +Y  
Sbjct: 232 QKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTS 291

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I G   + ++EDA  V+++M++   +P  VT+  LI G    L ++ A+++   ++ + 
Sbjct: 292 VISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLI-LR 350

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           +  PD   F+SLI G C  G+L  A  + +EM    I+ +   +S +I +L K  R  E 
Sbjct: 351 HCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEA 410

Query: 278 PAILKEMKERG-CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
             IL+E+  R    P +  YN +I   CK    + A  I+ +M +KGC  +  +Y +++ 
Sbjct: 411 LDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTILII 470

Query: 337 GLCKDGK 343
           G C  G+
Sbjct: 471 GHCMKGR 477



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 135/271 (49%), Gaps = 9/271 (3%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT-VKFFNTLLNPKLTCGKLDRM 137
           + P E  + +VI F  R+     AL++FD+M   +  +    FF+ +       G LD  
Sbjct: 104 VPPSEQSYIHVIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLDAA 163

Query: 138 KELFQIMEKY---VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL-QPTLVTFGTL 193
             L     +    + P A  YN L++  +   R +DA  +F+  ++  L  P + +F  +
Sbjct: 164 STLLTKGSRLGCCIEPYA--YNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVV 221

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G+C      +AL+L E  M  +   PD      L+ GLC   +++    V   + RD 
Sbjct: 222 IKGVCRMGNFQKALELVER-MTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDG 280

Query: 254 IEM-DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
           + M +A  Y+S+IS   KAG+  +  ++  +M E G +PN+VTYN LI+G+ K  D E+A
Sbjct: 281 VCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESA 340

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +  ++  + C  + ++++ ++ G C+ G+
Sbjct: 341 VRMYRQLILRHCPPDVVTFSSLIDGYCRCGQ 371



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 135/296 (45%), Gaps = 2/296 (0%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L R+    +  ++  Q+   +  +P+   F  V G    A LL+ A  +  + 
Sbjct: 111 YIHVIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLDAASTLLTKG 170

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDACSYNILIHGCVVSRR 167
           S     +    +N LLN  +  G+      LF+  I +   SPD  S+N++I G      
Sbjct: 171 SRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRMGN 230

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
            + A ++ + M +    P  +T   L+ GLC   +V++  ++   + R     P+   + 
Sbjct: 231 FQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYT 290

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           S+I G C  G++  A+ V  +M+      +   Y+ LI+   KA        + +++  R
Sbjct: 291 SVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILR 350

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            C P+ VT+++LI G+C+    + A  I  EMG    + N  ++++I+  LCK  +
Sbjct: 351 HCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNR 406


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 133/263 (50%), Gaps = 1/263 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  I +  +I  + +AR  ++A ++ DEM    +      +NT++      G++D     
Sbjct: 31  PDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVH 90

Query: 141 FQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
           ++ M+++ +P   +Y IL+     S R+ DA  + ++M++    P +VT+ TLI G C  
Sbjct: 91  YRDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKL 150

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
             +DEA+ L   ++   +  PD   +  LI G C          + +EMV+   E +   
Sbjct: 151 GNMDEAVVLFNQMLE-NSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFIT 209

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
           Y++L+ +L K+G+  +   + + M  R CKP+  T+N +I  FCK    + A+ +   M 
Sbjct: 210 YNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMT 269

Query: 321 DKGCKANPISYNVILGGLCKDGK 343
           D+GC  +  +YN+++ G C+  +
Sbjct: 270 DRGCLPDIYTYNIMISGACRANR 292



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 139/292 (47%), Gaps = 4/292 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ II  L      D    ++H         P  I +  ++    ++  +  A  + ++M
Sbjct: 71  YNTIIKGLCDNGRVD--SALVHYRDMQRHCAPSVITYTILVDALCKSARISDASLILEDM 128

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
                   V  +NTL+N     G +D    LF Q++E   SPD  +YNILI G     R 
Sbjct: 129 IEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERP 188

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           +D  K+  EMVK   +P  +T+ TL+  L    +  +A  L + ++R  + KP    F  
Sbjct: 189 QDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLR-RDCKPSHFTFNL 247

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I   C VG+L LA  + + M       D   Y+ +IS   +A R ++   +L+ M E G
Sbjct: 248 MIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAG 307

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           C P+ VTYN+++SG CK    + A+ + + + + G   + ++ + ++ GLCK
Sbjct: 308 CPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCK 359



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/195 (34%), Positives = 103/195 (52%), Gaps = 2/195 (1%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           SPD+ +Y+ LI+G   +R  + A+++ DEM KR + P    + T+I GLC   RVD AL 
Sbjct: 30  SPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALV 89

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
              D+ R  +  P    +  L+  LC    +S A  + E+M+      +   Y++LI+  
Sbjct: 90  HYRDMQR--HCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGF 147

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K G  +E   +  +M E  C P+  TYN LI G+CK+E  +    +L EM   GC+ N 
Sbjct: 148 CKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNF 207

Query: 329 ISYNVILGGLCKDGK 343
           I+YN ++  L K GK
Sbjct: 208 ITYNTLMDSLVKSGK 222



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 141/299 (47%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ +I    +    DE   + +Q+  ++   P    +  +I  Y +    +   ++
Sbjct: 136 NVVTYNTLINGFCKLGNMDEAVVLFNQMLENS-CSPDVFTYNILIDGYCKQERPQDGAKL 194

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
             EM  +  +     +NTL++  +  GK      L Q+M  +   P   ++N++I     
Sbjct: 195 LQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCK 254

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L+ A+++F  M  R   P + T+  +I G C   R+D+A +L E +       PD  
Sbjct: 255 VGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEA-GCPPDVV 313

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + S++ GLC   ++  A  V E +      +D    S+LI  L K+ R ++   +L+EM
Sbjct: 314 TYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREM 373

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  G  P+ V Y  LI GFCK +  + +     EM DKGC    I+Y++++  LCK  +
Sbjct: 374 ERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSAR 432



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 98/185 (52%), Gaps = 2/185 (1%)

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N L+   V  ++ ++A+ +F   +     P  +T+ TLI G C      +A +L ++ M 
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDE-ME 60

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
              + P   V+ ++IKGLC  G +  AL    +M R         Y+ L+ AL K+ R +
Sbjct: 61  KRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQR-HCAPSVITYTILVDALCKSARIS 119

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +   IL++M E GC PN VTYN LI+GFCK  + + A  + ++M +  C  +  +YN+++
Sbjct: 120 DASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILI 179

Query: 336 GGLCK 340
            G CK
Sbjct: 180 DGYCK 184



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 106/204 (51%), Gaps = 2/204 (0%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           FN +++     G+LD   ELFQ+M ++   PD  +YNI+I G   + R++DA ++ + M 
Sbjct: 245 FNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMT 304

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           +    P +VT+ +++ GLC   +VDEA ++ E ++R      D    ++LI GLC    L
Sbjct: 305 EAGCPPDVVTYNSIVSGLCKASQVDEAYEVYE-VLRNGGYFLDVVTCSTLIDGLCKSRRL 363

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A  +  EM R+    D   Y+ LI    KA + ++  A   EM ++GC P  +TY+ +
Sbjct: 364 DDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIV 423

Query: 300 ISGFCKEEDFEAAFTILDEMGDKG 323
           I   CK         +L  M ++G
Sbjct: 424 IDKLCKSARVRDGCMLLKTMLERG 447



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 48/82 (58%)

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           + L+SA  +  +  E   + K      C P+S+TY+ LI+GFCK  DF+ A+ +LDEM  
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 322 KGCKANPISYNVILGGLCKDGK 343
           +G   +   YN I+ GLC +G+
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGR 83


>gi|255660898|gb|ACU25618.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 484

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 166/325 (51%), Gaps = 15/325 (4%)

Query: 31  NPNDTEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVP 81
           + + T  H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +  
Sbjct: 20  HSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEW 78

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
            E ++  +I  YG+  +++ +++MF +M    V+ T+K +N L    L  G+    K  F
Sbjct: 79  DEDMWVMMIDSYGKZGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYF 138

Query: 142 -QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
            +++ + + P   ++N++I G  +S ++E A + F++M  R + P +VT+ T+I G    
Sbjct: 139 NKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRV 198

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            +++EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  
Sbjct: 199 KKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAIT 257

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDE 318
           YS+L+  L  A + +E   ILKEM ++   P  NS+ +  LIS  CK  + +AA  +L  
Sbjct: 258 YSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSI-FMRLISSHCKSGNLDAAADVLKA 316

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M           Y V++   CK G+
Sbjct: 317 MXRLSVPTEAGHYGVLIENFCKXGQ 341



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 128/263 (48%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F++M S  +   V  +NT++N      K++  ++ F  M+ + 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   +++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + +++M  Y    D  +F  LI   C  G L  A  V + M R  +  +AG Y  LI  
Sbjct: 276 VILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMXRLSVPTEAGHYGVLIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             K G+ ++   +L ++ E+    +P S        YN +I   C       A T++ ++
Sbjct: 336 FCKXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQAAKAETLVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +P + N ++ G  ++G
Sbjct: 396 LKLGVQ-DPTALNTLIRGHSQEG 417



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 125/290 (43%), Gaps = 55/290 (18%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + +  +I  Y R + +E A + F EM   N++ TV  + TL+   ++  ++D   
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT-------LVT- 189
            L + M+ + + P+A +Y+ L+ G   + ++ +A  +  EM+ + L PT       L++ 
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300

Query: 190 ----------------------------FGTLIYGLCLELRVDEALKL------KEDIMR 215
                                       +G LI   C   + D+A+KL      K+ I+R
Sbjct: 301 HCKSGNLDAAADVLKAMXRLSVPTEAGHYGVLIENFCKXGQYDKAVKLLDKLIEKDIILR 360

Query: 216 ---VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM---DAGIYSSLISALF 269
                +++P    +  +I+ LC  G+ + A    E +VR  +++   D    ++LI    
Sbjct: 361 PQSTLHLEPSA--YNPMIEYLCNNGQAAKA----ETLVRQLLKLGVQDPTALNTLIRGHS 414

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           + G  +    +LK M  R        YN+L+  + K+ +   A   LD M
Sbjct: 415 QEGSPDSAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSM 464


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 147/301 (48%), Gaps = 5/301 (1%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +N+   +++I  L R    D    IL ++     I P    F  +I        ++ A++
Sbjct: 121 HNVYSLNVLINCLCRLNHVDFAVSILGKM-FKLGIHPTASTFNALINGLCNEGKIKEAVE 179

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV 163
           +F+EM     +  V  +NT++N     G      ++F+ ME+    PD  +YN +I    
Sbjct: 180 LFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLC 239

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-KEDIMRVYNVKPD 222
             R + DA +   EM+ R + P + T+  +++G C+  +++EA +L KE + R  +V PD
Sbjct: 240 KDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGR--DVMPD 297

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
                 L+ GLC  G +S A  V E M    +E +   Y++L+         NE   + +
Sbjct: 298 TVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFE 357

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            M  +GC P   +YN LI+GFCK    + A ++L EM  K    + ++Y+ ++ GLC+ G
Sbjct: 358 IMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFG 417

Query: 343 K 343
           +
Sbjct: 418 R 418



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 153/306 (50%), Gaps = 12/306 (3%)

Query: 39  PLKPFRYN-LLHYDLIITKLGRA-KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           P   F YN ++H   I+ +L  A ++F EM      +  D  ++P  +    ++    + 
Sbjct: 260 PPNVFTYNCMVHGFCILGQLNEATRLFKEM------VGRD--VMPDTVTLTILVDGLCKE 311

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSY 155
            ++  A  +F+ M+   V+  +  +N L++       ++  K++F+IM  +  +P   SY
Sbjct: 312 GMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSY 371

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           NILI+G   SRR+++A  +  EM  + L P  VT+ TL+ GLC   R  EAL + ++ M 
Sbjct: 372 NILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKE-MC 430

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
            Y + P+   ++ L+ G C  G L  AL + + M   K+E +   ++ LI  +F AG+  
Sbjct: 431 SYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLE 490

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
               +  ++   G +P   TY  +I G  KE   + A+ +  +M D G   N  SYNV++
Sbjct: 491 VAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMI 550

Query: 336 GGLCKD 341
            G  ++
Sbjct: 551 QGFLQN 556



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 142/299 (47%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ II  L +         +  +++ +    P  + +  +I    + RL+  A++ 
Sbjct: 192 NVISYNTIINGLCKTGNTSMAVDVFKKMEQNG-CKPDVVTYNTIIDSLCKDRLVNDAMEF 250

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             EM    +   V  +N +++     G+L+    LF +++ + V PD  +  IL+ G   
Sbjct: 251 LSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCK 310

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              + +A  VF+ M ++ ++P + T+  L+ G CL+  ++EA K+ E ++R     P   
Sbjct: 311 EGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIR-QGCAPGVH 369

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LI G C    +  A  +  EM    +  D   YS+L+  L + GR  E   I KEM
Sbjct: 370 SYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEM 429

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  PN VTY+ L+ GFCK    + A  +L  M +K  + N + + +++ G+   GK
Sbjct: 430 CSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGK 488



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 151/309 (48%), Gaps = 8/309 (2%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF-CNVIGFYG 94
           E +  KP   +++ Y+ II  L + ++ ++  + L ++  D  I P    + C V GF  
Sbjct: 220 EQNGCKP---DVVTYNTIIDSLCKDRLVNDAMEFLSEML-DRGIPPNVFTYNCMVHGFCI 275

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDAC 153
             +L E A ++F EM   +V         L++     G +   + +F+ M EK V P+  
Sbjct: 276 LGQLNE-ATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNIS 334

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN L+ G  + R + +A KVF+ M+++   P + ++  LI G C   R+DEA  L  + 
Sbjct: 335 TYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAE- 393

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M    + PD   +++L++GLC  G    AL + +EM    +  +   YS L+    K G 
Sbjct: 394 MYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGH 453

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +E   +LK M+E+  +PN V +  LI G       E A  +  ++   G +    +Y V
Sbjct: 454 LDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTV 513

Query: 334 ILGGLCKDG 342
           ++ GL K+G
Sbjct: 514 MIKGLLKEG 522



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 98/209 (46%), Gaps = 1/209 (0%)

Query: 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           D +   ++++     P    +   +      ++      + ++M    +   + +   LI
Sbjct: 71  DALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLI 130

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
             LC    VD A+ +   + ++  + P    F +LI GLC  G++  A+ +  EMVR   
Sbjct: 131 NCLCRLNHVDFAVSILGKMFKL-GIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGH 189

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           E +   Y+++I+ L K G  +    + K+M++ GCKP+ VTYN +I   CK+     A  
Sbjct: 190 EPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAME 249

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
            L EM D+G   N  +YN ++ G C  G+
Sbjct: 250 FLSEMLDRGIPPNVFTYNCMVHGFCILGQ 278



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 1/174 (0%)

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           ++DA   F  MV+   +P++  FG  +     + +    + L    M ++ V  +     
Sbjct: 69  IDDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQ-MDLFGVTHNVYSLN 127

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            LI  LC +  +  A+ +  +M +  I   A  +++LI+ L   G+  E   +  EM  R
Sbjct: 128 VLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRR 187

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           G +PN ++YN +I+G CK  +   A  +  +M   GCK + ++YN I+  LCKD
Sbjct: 188 GHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKD 241


>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 418

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 131/244 (53%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y +   L+   ++ + M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++  + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 289 KGDLKQAQDLXDE-MSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP   TY  +I+ FCK+ D      +L EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407

Query: 320 GDKG 323
              G
Sbjct: 408 QRDG 411



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 126/228 (55%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++  +  G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E ++D+A +L ++++    + P+G  F +LI G C 
Sbjct: 195 NAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD-NGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ +  +M+   +  D   Y++LI  L K G   +   +  EM  +G KP+ +T
Sbjct: 254 NGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGR 361



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/267 (32%), Positives = 134/267 (50%), Gaps = 9/267 (3%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ + ++ +V  FNTL+N  +  G LD 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M+   V PD  +Y++LI+G     +++DA ++FDEM+   L P  VTF TLI 
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   RVD A+++   ++   ++ PD   + +LI GLC  G+L  A  + +EM    ++
Sbjct: 250 GHCKNGRVDLAMEIYXQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLK 308

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI    K G         K M +   + + V Y ALISG C+E     A  +
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKM 368

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
           L EM   G K    +Y +I+   CK G
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 2/198 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           ++ A ++FDEM    +      F TL++     G++D   E++ Q++ + +SPD  +YN 
Sbjct: 222 MDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNT 281

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G      L+ A  + DEM  + L+P  +T+ TLI G C E  ++ A + ++ +++  
Sbjct: 282 LIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKE- 340

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N++ D   + +LI GLC  G    A  +  EM+   ++ + G Y+ +I+   K G     
Sbjct: 341 NIRLDXVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400

Query: 278 PAILKEMKERGCKPNSVT 295
             +LKEM+  G  P+ VT
Sbjct: 401 SKLLKEMQRDGYVPSVVT 418



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 56/115 (48%)

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I+ L  +    L  G  EE +          ++ L+ +  K G      ++   + + G
Sbjct: 107 VIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWG 166

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +P+ V++N L++G+ K  D +  F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 155/331 (46%), Gaps = 38/331 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L +A+M D  + +   +  D  + P    +  +I  Y      +  +QM
Sbjct: 201 NVVTYTTVIDGLCKAQMVDRAKGVFQHMI-DKGVRPNNHTYTCLIHGYLSIGKWKEVVQM 259

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG--- 161
             EMS+  +Q     +  LL+     G+    + +F  ++ K + P+   Y IL+HG   
Sbjct: 260 LQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYAT 319

Query: 162 ------------------------------CVVSRR--LEDAWKVFDEMVKRRLQPTLVT 189
                                         C  +++  +++A  +FD+M ++RL P +VT
Sbjct: 320 EGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVT 379

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           +G LI  LC   RVD+A+ LK + M    + PD  VF+SL+ GLC V +   A  +  E+
Sbjct: 380 YGALIDALCKLGRVDDAV-LKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEV 438

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           +   I +D   +++L+  L + GR  E   ++  M   G +P+ ++YN L+ G C     
Sbjct: 439 LDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRI 498

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + A  +LD +   G K + ++YN +L G CK
Sbjct: 499 DEAAKLLDVIVSIGLKPDKVTYNTLLHGYCK 529



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 149/295 (50%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++++     +  M DE   I  +++   R+ P  + +  +I    +   ++ A+  F++M
Sbjct: 345 FNIMFCAYAKKAMIDEAMHIFDKMRQQ-RLSPNIVTYGALIDALCKLGRVDDAVLKFNQM 403

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
               +   +  F++L+    T  K ++ +ELF +++++ +  D   +N L+       R+
Sbjct: 404 IDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRV 463

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A ++ D M++  ++P ++++ TL+ G CL  R+DEA KL + I+ +  +KPD   + +
Sbjct: 464 MEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSI-GLKPDKVTYNT 522

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ G C    +  A  +  EM+   +  D   Y++++  LF+ GR +E   +   M    
Sbjct: 523 LLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSR 582

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + N  TYN +I+G CK    + AF +   +  K  + +  + N+++G L K G+
Sbjct: 583 TQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGR 637



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 151/302 (50%), Gaps = 3/302 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + N+  Y +++          EM   L  L     + P   IF  +   Y +  +++
Sbjct: 301 KGIKPNVTIYGILLHGYATEGSLSEMHSFL-DLMVGNGVSPDHHIFNIMFCAYAKKAMID 359

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
            A+ +FD+M    +   +  +  L++     G++D     F Q++++ ++PD   ++ L+
Sbjct: 360 EAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLV 419

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +G     + E A ++F E++ + ++   V F TL+  LC E RV EA +L + ++RV  V
Sbjct: 420 YGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRV-GV 478

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +PD   + +L+ G C  G +  A  + + +V   ++ D   Y++L+    KA R ++  +
Sbjct: 479 RPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYS 538

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + +EM  +G  P+ VTYN ++ G  +   F  A  +   M +   + N  +YN+I+ GLC
Sbjct: 539 LFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLC 598

Query: 340 KD 341
           K+
Sbjct: 599 KN 600



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 117/250 (46%), Gaps = 7/250 (2%)

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACS 154
            R++E A ++ D M    V+  V  +NTL++     G++D   +L  ++    + PD  +
Sbjct: 461 GRVME-AQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVT 519

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YN L+HG   +RR++DA+ +F EM+ + L P +VT+ T+++GL    R  EA   KE  +
Sbjct: 520 YNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEA---KELYL 576

Query: 215 RVYNVKPDGQVFAS--LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            + N +    ++    +I GLC    +  A  +   +    +++D    + +I AL K G
Sbjct: 577 SMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGG 636

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           RK +   +   +   G  P+  TY  +     KE   E    +   M + G   N    N
Sbjct: 637 RKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLN 696

Query: 333 VILGGLCKDG 342
            ++  L   G
Sbjct: 697 ALVRWLLHRG 706



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 122/259 (47%), Gaps = 15/259 (5%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNP--KLTCGKLDRMK-ELFQIMEKY----VSPD 151
           L  AL++FDEM +     +V+ FN LL    +  C     +   LF  M +     V+P 
Sbjct: 32  LNDALKLFDEMLTHARPASVRAFNQLLTAVSRARCSSASELVVSLFNRMIRECSIKVAPS 91

Query: 152 ACSYNILIHGCVVSR-RLEDAWKVFDEMVKR--RLQPTLVTFGTLIYGLCLELRVDEALK 208
           + +Y ILI GC     RL+  +  F  ++K   R+  T++ F  L+ GLC   RVDEA  
Sbjct: 92  SFTYTILI-GCFCRMGRLKHGFAAFGLILKTGWRVNDTVI-FSQLLKGLCDAKRVDEATD 149

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD---KIEMDAGIYSSLI 265
           +    M  +   PD   ++ L+KG C       AL +   M  D       +   Y+++I
Sbjct: 150 ILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVI 209

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
             L KA   +    + + M ++G +PN+ TY  LI G+     ++    +L EM   G +
Sbjct: 210 DGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQ 269

Query: 326 ANPISYNVILGGLCKDGKC 344
            +   Y V+L  LCK+G+C
Sbjct: 270 PDCYIYAVLLDYLCKNGRC 288



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 142/356 (39%), Gaps = 54/356 (15%)

Query: 35  TEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-----IVPKEIIFCNV 89
           T A P     +N L     +T + RA+     + ++       R     + P    +  +
Sbjct: 44  THARPASVRAFNQL-----LTAVSRARCSSASELVVSLFNRMIRECSIKVAPSSFTYTIL 98

Query: 90  IGFYGRARLLERALQMFDEM--SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF--QIME 145
           IG + R   L+     F  +  + + V  TV  F+ LL       ++D   ++   ++ E
Sbjct: 99  IGCFCRMGRLKHGFAAFGLILKTGWRVNDTV-IFSQLLKGLCDAKRVDEATDILLRRMPE 157

Query: 146 KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR---RLQPTLVTFGTLIYGLCLELR 202
              +PD  SY+IL+ G    +R E+A ++   M         P +VT+ T+I GLC    
Sbjct: 158 FGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQM 217

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
           VD A  + + ++    V+P+   +  LI G  ++G+    + + +EM    ++ D  IY+
Sbjct: 218 VDRAKGVFQHMID-KGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYA 276

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF------------- 309
            L+  L K GR  E   I   +  +G KPN   Y  L+ G+  E                
Sbjct: 277 VLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGN 336

Query: 310 ----------------------EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
                                 + A  I D+M  +    N ++Y  ++  LCK G+
Sbjct: 337 GVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGR 392


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 155/311 (49%), Gaps = 5/311 (1%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           ++ +A  LKP   + + Y  +I  L +A    E +++  Q++ + R VP    +  +I  
Sbjct: 139 HELKAQGLKP---DDVSYTSMIWVLCKAGRLGEAEELFAQMEAE-RSVPCAYAYNTMIMG 194

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDA 152
           YG A   E A ++ + +       +V  FN++L       K+D    LF++M+K   P++
Sbjct: 195 YGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNS 254

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YNI+I    +  R+E+A+++ DEM    L P L+T   ++  LC   +++EA K+ E 
Sbjct: 255 STYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFES 314

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
             +     PD   + SLI GL   G++  A  + E+M+      +  +Y+SLI   F  G
Sbjct: 315 ASQ-RGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHG 373

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           RK +   + KE+  RGCKP+    N  +    K  + E    I +++   G   +  SY+
Sbjct: 374 RKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYS 433

Query: 333 VILGGLCKDGK 343
           +++ GL K G+
Sbjct: 434 ILIHGLTKAGQ 444



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 136/249 (54%), Gaps = 2/249 (0%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDAC 153
           +A  +E+   +F+++ S+     V+ ++ L++     G+      +F  M ++  + DA 
Sbjct: 406 KAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDAR 465

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN ++ G   S ++  A+++ +EM ++ +QPT+ T+G ++ GL    R+DEA  L E+ 
Sbjct: 466 AYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEE- 524

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
            +   ++ +  +++SLI G   VG +  A  + EEM++  +  +   ++SL+ AL KA  
Sbjct: 525 AKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEE 584

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            NE     + MKE  C PN+ TY+ LI+G C+ + +  AF    +M  +G   N ++Y  
Sbjct: 585 INEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTT 644

Query: 334 ILGGLCKDG 342
           ++ GL K G
Sbjct: 645 MISGLAKVG 653



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 158/338 (46%), Gaps = 17/338 (5%)

Query: 8   LACLPRLQK-DPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEM 66
           L CL + +K D  L+L      +  PN +              Y++II  L      +E 
Sbjct: 227 LTCLGKKRKVDEALSLFEVMKKDAEPNSST-------------YNIIIDMLCLGGRVEEA 273

Query: 67  QQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126
            +IL +++H + + P  +    ++    +AR LE A ++F+  S          + +L++
Sbjct: 274 YRILDEMEHAS-LFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLID 332

Query: 127 PKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
                G++D    LF+ +++   + +   Y  LI    +  R ED  KVF E+++R  +P
Sbjct: 333 GLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKP 392

Query: 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
            L    T +  +     V++   + EDI R Y   PD + ++ LI GL   G+      +
Sbjct: 393 DLTLLNTYMDCVFKAGEVEKGRMIFEDI-RSYGFLPDVRSYSILIHGLTKAGQARETSNI 451

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
              M +    +DA  Y++++    K+G+ ++   IL+EMKE+  +P   TY A++ G  K
Sbjct: 452 FHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAK 511

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +  + A+ + +E   KG + N + Y+ ++ G  K G+
Sbjct: 512 IDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGR 549



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 138/267 (51%), Gaps = 9/267 (3%)

Query: 83  EIIFCNV-IGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
           +I+  NV I  +G+A  ++ A + F E+ +  ++     + +++      G+L   +ELF
Sbjct: 114 DIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELF 173

Query: 142 QIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
             ME   S P A +YN +I G   + R EDA+K+ + + +R   P++V+F +++  L  +
Sbjct: 174 AQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKK 233

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            +VDEAL L E + +  + +P+   +  +I  LC  G +  A  + +EM    +  +   
Sbjct: 234 RKVDEALSLFEVMKK--DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLT 291

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
            + ++  L KA +  E   I +   +RGC P+ VTY +LI G  K+   + A+ + ++M 
Sbjct: 292 VNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKML 351

Query: 321 DKGCKANPISY-----NVILGGLCKDG 342
           D G  ANP+ Y     N  + G  +DG
Sbjct: 352 DAGHNANPVVYTSLIRNFFIHGRKEDG 378



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 142/296 (47%), Gaps = 4/296 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ ++ I+T LG+ +  DE   +   +K D    P    +  +I        +E A ++
Sbjct: 219 SVVSFNSILTCLGKKRKVDEALSLFEVMKKDAE--PNSSTYNIIIDMLCLGGRVEEAYRI 276

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
            DEM   ++   +   N +++      KL+   ++F+   ++  +PD  +Y  LI G   
Sbjct: 277 LDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGK 336

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             ++++A+++F++M+        V + +LI    +  R ++  K+ ++++R    KPD  
Sbjct: 337 KGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIR-RGCKPDLT 395

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           +  + +  +   GE+     + E++       D   YS LI  L KAG+  E   I   M
Sbjct: 396 LLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAM 455

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           K++G   ++  YNA++ GFCK      A+ IL+EM +K  +    +Y  I+ GL K
Sbjct: 456 KQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAK 511



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 134/292 (45%), Gaps = 4/292 (1%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           +   L RA+  D+    +  ++   +  P    +  +IG    AR  ERAL++  +M   
Sbjct: 16  LAAALVRARRLDDAVLAVAVMRR-LKFRPAFSAYTVLIGALAEARRPERALELLRQMQEV 74

Query: 113 NVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDA 171
             ++ V  F TL+      G++ D +  + ++    + PD   YN+ I     +  ++ A
Sbjct: 75  GYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMA 134

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIK 231
            K F E+  + L+P  V++ ++I+ LC   R+ EA +L    M      P    + ++I 
Sbjct: 135 CKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQ-MEAERSVPCAYAYNTMIM 193

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           G  + G    A  + E +           ++S+++ L K  + +E  ++ + MK +  +P
Sbjct: 194 GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMK-KDAEP 252

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           NS TYN +I   C     E A+ ILDEM       N ++ N+++  LCK  K
Sbjct: 253 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARK 304



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 88/185 (47%), Gaps = 3/185 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  I+  L +    DE   +  + K    I    +++ ++I  +G+   ++ A  + +EM
Sbjct: 502 YGAIVDGLAKIDRLDEAYMLFEEAKSKG-IELNVVLYSSLIDGFGKVGRIDEAYLILEEM 560

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
               +   V  +N+LL+  +   +++     FQ M E    P+  +Y+ILI+G    ++ 
Sbjct: 561 MKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKY 620

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
             A+  + +M K+ L P +VT+ T+I GL     + +A  L E   +     PD   F +
Sbjct: 621 NKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERF-KANGGIPDAASFNA 679

Query: 229 LIKGL 233
           LI+G+
Sbjct: 680 LIEGM 684


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 139/293 (47%), Gaps = 5/293 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNV-IGFYGRARLLERALQMFDE 108
           ++ ++T + + K    +  + HQ+  D+  +P  I   ++ I  +     +  A  +  +
Sbjct: 64  FNKLLTSIAKMKHHSTLLSLSHQM--DSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAK 121

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRR 167
           +     Q     F TL+      GK+     LF +++ +   PD  +Y  LI+G      
Sbjct: 122 ILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGN 181

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
              A ++   MV++  QP +  + T+I  LC + +V EA  L  + M    + PD   + 
Sbjct: 182 TSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSE-MVTKGISPDIFTYN 240

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           SLI  LC + E      +  EMV  KI  D   +++++ AL K G+  E   ++ +M +R
Sbjct: 241 SLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQR 300

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           G +PN VTY AL+ G C   + + A  + D M  KGC  N ISYN ++ G CK
Sbjct: 301 GVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCK 353



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 2/245 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           ++ A+++FD M        V  +NTL+N      ++D+   LF ++  + + PD  +Y+ 
Sbjct: 322 MDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYST 381

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LIHG     RL+DA  +F EMV     P LVT+  L+  LC    + EA+ L + I    
Sbjct: 382 LIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAI-EGS 440

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N+ PD QV    I G+C  GEL  A  +   +    ++ D   YS +I+ L + G  +E 
Sbjct: 441 NLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEA 500

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + +EM E GC  N   YN +  GF +  +   A  +L EM  +G  A+  +  + +  
Sbjct: 501 SKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKM 560

Query: 338 LCKDG 342
           L  DG
Sbjct: 561 LSDDG 565



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 130/261 (49%), Gaps = 4/261 (1%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MK 138
           P    F  +I G Y   ++ E AL +FD+M     +  V  + TL+N     G     ++
Sbjct: 129 PDTATFTTLIRGIYVEGKIGE-ALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIR 187

Query: 139 ELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            L  +++K   P+  +YN +I      R++ +A+ +F EMV + + P + T+ +LI+ LC
Sbjct: 188 LLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALC 247

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
                     L  +++    + PD   F +++  LC  G+++ A  V ++M++  +E + 
Sbjct: 248 NLCEWKHVATLLNEMVD-SKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNV 306

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y++L+         +E   +   M  +GC PN ++YN LI+G+CK +  + A  +  E
Sbjct: 307 VTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGE 366

Query: 319 MGDKGCKANPISYNVILGGLC 339
           M  +    + ++Y+ ++ GLC
Sbjct: 367 MCRQELIPDTVTYSTLIHGLC 387



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 122/246 (49%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           ++ A+  F+ M       +   FN LL           +  L   M+ + + P+  + +I
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHI 101

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+      R+  A+ V  +++K   QP   TF TLI G+ +E ++ EAL L  D M   
Sbjct: 102 LINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLF-DKMIGE 160

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             +PD   + +LI GLC VG  S A+ +   MV+   + +   Y+++I +L K  +  E 
Sbjct: 161 GFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEA 220

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +  EM  +G  P+  TYN+LI   C   +++   T+L+EM D     + +S+N ++  
Sbjct: 221 FNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDA 280

Query: 338 LCKDGK 343
           LCK+GK
Sbjct: 281 LCKEGK 286



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 144/299 (48%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y+ +I  L     +  +  +L+++  D++I+P  + F  V+    +   +  A  +
Sbjct: 235 DIFTYNSLIHALCNLCEWKHVATLLNEMV-DSKIMPDVVSFNTVVDALCKEGKVTEAHDV 293

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            D+M    V+  V  +  L++      ++D   ++F  M  K   P+  SYN LI+G   
Sbjct: 294 VDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCK 353

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            +R++ A  +F EM ++ L P  VT+ TLI+GLC   R+ +A+ L  +++    + P+  
Sbjct: 354 IQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQI-PNLV 412

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  L+  LC    L+ A+ + + +    ++ D  + +  I  + +AG       +   +
Sbjct: 413 TYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNL 472

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G +P+  TY+ +I+G C+    + A  +  EM + GC  N   YN I  G  ++ +
Sbjct: 473 SSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNE 531



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 102/239 (42%), Gaps = 3/239 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ +I    + +  D+   +  ++     ++P  + +  +I        L+ A+ +
Sbjct: 340 NVISYNTLINGYCKIQRIDKAMYLFGEMCRQ-ELIPDTVTYSTLIHGLCHVERLQDAIAL 398

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           F EM + +    +  +  LL+       L     L + +E   + PD    NI I G   
Sbjct: 399 FHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCR 458

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  LE A  +F  +  + LQP + T+  +I GLC    +DEA KL  + M       +G 
Sbjct: 459 AGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFRE-MDENGCTLNGC 517

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
           ++ ++ +G     E S A+ + +EMV      DA   +  +  L   G       IL+E
Sbjct: 518 IYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDGLDQSLKQILRE 576


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 148/310 (47%), Gaps = 12/310 (3%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRA--KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYG 94
           A P   F YN++   L  +  G    K+FDEM         D  + P +I +  +I  + 
Sbjct: 190 APPPDAFSYNVVIAGLWRSGKGSDALKVFDEMV--------DRGVAPNQITYNTMIDGHV 241

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDAC 153
           +   LE   ++ D+M     +  V  +N LL+     G++D  + L   M  Y + PD  
Sbjct: 242 KGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGF 301

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +Y+IL  G   +        +F E +K+ +     T   L+ GLC + +V +A ++ E +
Sbjct: 302 TYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEML 361

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           +    + P   ++ +LI G C V +L  A  + E+M    I  D   Y++LI+ L K   
Sbjct: 362 VHT-GLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEM 420

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   ++ EM++ G  P+  T+N LI  + +    E  FT+L +M DKG K+N IS+  
Sbjct: 421 ITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGS 480

Query: 334 ILGGLCKDGK 343
           ++   CK+GK
Sbjct: 481 VVKAFCKNGK 490



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 146/299 (48%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+++++ L RA   DE + ++ ++   + ++P    +  +     R       L +
Sbjct: 264 NVVTYNVLLSGLCRAGRMDETRALMDEMTSYS-MLPDGFTYSILFDGLTRTGDSRTMLSL 322

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F E     V +     + LLN     GK+ + +++ +++    + P    YN LI+G   
Sbjct: 323 FGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQ 382

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            R L+ A+ +F++M  R ++P  +T+  LI GLC    + EA  L  + M    V P  +
Sbjct: 383 VRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVME-MEKSGVDPSVE 441

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI      G+L     V  +M    I+ +   + S++ A  K G+  E  AIL +M
Sbjct: 442 TFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDM 501

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +   PN+  YN++I  + +    E AF ++++M   G  A+  +YN++L GLCK+ +
Sbjct: 502 IHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQ 560



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 137/278 (49%), Gaps = 3/278 (1%)

Query: 67  QQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126
           +Q+L  L H T +VP   I+  +I  Y + R L+ A  +F++M S +++     +N L+N
Sbjct: 355 EQVLEMLVH-TGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALIN 413

Query: 127 PKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
                  +   ++L   MEK  V P   ++N LI     + +LE  + V  +M  + ++ 
Sbjct: 414 GLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKS 473

Query: 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
            +++FG+++   C   ++ EA+ + +D++   +V P+ QV+ S+I      G    A  +
Sbjct: 474 NVISFGSVVKAFCKNGKIPEAVAILDDMIH-KDVVPNAQVYNSIIDAYIESGGTEQAFLL 532

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
            E+M    +      Y+ L+  L K  + +E   ++  +  +G +P+ V+YN +IS  C 
Sbjct: 533 VEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCN 592

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + D + A  +L EM     +    +Y+ +L  L   G+
Sbjct: 593 KGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGSAGR 630



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 136/284 (47%), Gaps = 9/284 (3%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +  R + + Y+ +I  L + +M  E + ++ +++  + + P    F  +I  YGRA  LE
Sbjct: 399 RHIRPDHITYNALINGLCKMEMITEAEDLVMEMEK-SGVDPSVETFNTLIDAYGRAGQLE 457

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILI 159
           +   +  +M    ++  V  F +++      GK+ + +  L  ++ K V P+A  YN +I
Sbjct: 458 KCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSII 517

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
              + S   E A+ + ++M    +  ++ T+  L+ GLC   ++DEA +L  ++     +
Sbjct: 518 DAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTN-QGL 576

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +PD   + ++I   C  G+   AL + +EM +  I      Y  L+SAL  AGR ++   
Sbjct: 577 RPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDMEC 636

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           + + M  +  +P+S  Y       C+ E   A+     EM +KG
Sbjct: 637 LYQHMVHKNVEPSSSIYGTR----CENESKVASLK--KEMSEKG 674



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 71/128 (55%), Gaps = 2/128 (1%)

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM--DAGIYSSLISALFKAGRKN 275
             +PD   +   ++   A G+L  AL +   M R +     DA  Y+ +I+ L+++G+ +
Sbjct: 153 GARPDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGS 212

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +   +  EM +RG  PN +TYN +I G  K  D EA F + D+M   G K N ++YNV+L
Sbjct: 213 DALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLL 272

Query: 336 GGLCKDGK 343
            GLC+ G+
Sbjct: 273 SGLCRAGR 280



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 1/194 (0%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P   S N+L+   +   R  D    F  +V    +P    +   +        +DEAL +
Sbjct: 121 PSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAM 180

Query: 210 KEDIMRVYNVKP-DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
              + R     P D   +  +I GL   G+ S AL V +EMV   +  +   Y+++I   
Sbjct: 181 LRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGH 240

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K G       +  +M + G KPN VTYN L+SG C+    +    ++DEM       + 
Sbjct: 241 VKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDG 300

Query: 329 ISYNVILGGLCKDG 342
            +Y+++  GL + G
Sbjct: 301 FTYSILFDGLTRTG 314


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 149/299 (49%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ ++  L  AK + ++++++ ++       P  + F  +IG+  R  L ER  ++
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEELMDEMVR-VDCAPNIVTFNTLIGYLCRNGLFERVHEV 273

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
             +MS       ++ + T+++     G L+   E+   M  Y + P+   YN ++ G   
Sbjct: 274 LAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCS 333

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R ++A ++  EM ++      VTF  L+   C    VD  ++L E ++  +   PD  
Sbjct: 334 AERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLS-HGCMPDVI 392

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + ++I G C  G +  A+ + + M     + +   Y+ ++  L  AGR  +   ++ +M
Sbjct: 393 TYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQM 452

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ++GC PN VT+N LI+  CK+   E A  +L +M   GC  + ISY+ ++ GL K GK
Sbjct: 453 IQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 511



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 159/312 (50%), Gaps = 8/312 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIG 91
           N   ++ LKP   N++ Y+ ++  L  A+ + E +++L ++ + D  +   ++ F  ++ 
Sbjct: 310 NRMPSYGLKP---NVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPL--DDVTFNILVD 364

Query: 92  FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSP 150
           F+ +  L++R +++ ++M S      V  + T++N     G +D    L + M      P
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKP 424

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           +  SY I++ G   + R  DA ++  +M+++   P  VTF TLI  LC +  V++A++L 
Sbjct: 425 NTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELL 484

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
           +  M V    PD   ++++I GL   G+   AL +   MV   I  +  IYSS+  AL +
Sbjct: 485 KQ-MLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSR 543

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            GR N+   +   +K+   + ++V YNA+IS  CK  + + A      M   GC  N  +
Sbjct: 544 EGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNEST 603

Query: 331 YNVILGGLCKDG 342
           Y +++ GL  +G
Sbjct: 604 YTMLIKGLASEG 615



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 150/299 (50%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ ++ +I  L R  +F+ + ++L Q+  +    P   ++  +I    +   LE A ++
Sbjct: 250 NIVTFNTLIGYLCRNGLFERVHEVLAQMS-EHGCTPDIRMYATIIDGICKEGHLEVANEI 308

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILIHGCVV 164
            + M S+ ++  V  +NT+L    +  +    +EL   M +   P D  ++NIL+     
Sbjct: 309 LNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQ 368

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  ++   ++ ++M+     P ++T+ T+I G C E  +DEA+ L +  M     KP+  
Sbjct: 369 NGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS-MSSCGCKPNTV 427

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  ++KGLC+ G    A  +  +M++     +   +++LI+ L K G   +   +LK+M
Sbjct: 428 SYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM 487

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              GC P+ ++Y+ +I G  K    E A  +L+ M +KG   N I Y+ I   L ++G+
Sbjct: 488 LVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGR 546



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 128/296 (43%), Gaps = 50/296 (16%)

Query: 87  CNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK 146
           C   GF    R+LE        M +    +     N +LN     G +D    L + +  
Sbjct: 157 CRSGGFRNSVRVLE-------AMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAF 209

Query: 147 Y-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC---LELR 202
           +    D  SYN ++ G  +++R  D  ++ DEMV+    P +VTF TLI  LC   L  R
Sbjct: 210 FGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFER 269

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
           V E L      M  +   PD +++A++I G+C  G L +A  +   M    ++ +   Y+
Sbjct: 270 VHEVLAQ----MSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYN 325

Query: 263 SLISALFKAGRKNEFPAILKEMKER----------------------------------- 287
           +++  L  A R  E   +L EM ++                                   
Sbjct: 326 TVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSH 385

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           GC P+ +TY  +I+GFCKE   + A  +L  M   GCK N +SY ++L GLC  G+
Sbjct: 386 GCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGR 441



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 13/201 (6%)

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE------L 201
           V P+A ++  ++ G     R+ DA +V DEM  +   P    +  ++   C        +
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
           RV EA+  K   +   N          ++  +C  G +  A+G+  ++     E D   Y
Sbjct: 167 RVLEAMHAKGCTLDTGNCN-------LVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSY 219

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           ++++  L  A R  +   ++ EM    C PN VT+N LI   C+   FE    +L +M +
Sbjct: 220 NAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE 279

Query: 322 KGCKANPISYNVILGGLCKDG 342
            GC  +   Y  I+ G+CK+G
Sbjct: 280 HGCTPDIRMYATIIDGICKEG 300


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 139/304 (45%), Gaps = 12/304 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   ++++I    R +  D+       +K   R  P    F  ++    +A + E+A ++
Sbjct: 153 NTFSFNILIRSFARTRRADDAVTCFEIMKRK-RCKPDLHTFLILVDCLCKAGMDEKAFEV 211

Query: 106 FDEMSSFNV-----QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
           F EM +         +      TLL  K    ++   +E+F  MEK    PDA +YN +I
Sbjct: 212 FHEMMAMGFVPPDRALHTAMVRTLLKAK----RVKEAREVFGQMEKCGFPPDAIAYNTMI 267

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G   +   ++A KV D M+ +   PT VT+G L+  LC    ++ A +L   +M     
Sbjct: 268 DGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFR-VMAASGF 326

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +P+  ++ SLI G    G +  A  + +EMV      D   ++ +I  L K+G   +   
Sbjct: 327 RPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAK 386

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
             +EM   GCKPN VTY  +I G  K      AF I+  M   GC  + ++Y  +L G C
Sbjct: 387 SFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFC 446

Query: 340 KDGK 343
           K G+
Sbjct: 447 KLGR 450



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 144/303 (47%), Gaps = 4/303 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F++++  Y+ ++  L   K + +   I H+      I P    F  +I  + R R  + A
Sbjct: 115 FQHDVFTYNCLMNLLVAEKNYSQCYAI-HEEMLKAGIAPNTFSFNILIRSFARTRRADDA 173

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYNILIH 160
           +  F+ M     +  +  F  L++     G  ++  E+F  M    +V PD   +  ++ 
Sbjct: 174 VTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVR 233

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
             + ++R+++A +VF +M K    P  + + T+I GL       EALK+ ++++    V 
Sbjct: 234 TLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACV- 292

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P    +  L+  LC  G L  A  +   M       ++ IY+SLI    K+GR  E  ++
Sbjct: 293 PTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSL 352

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             EM E G +P+ +T+  +I G CK  +FE A    +EM   GCK N ++Y  I+ GL K
Sbjct: 353 FDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSK 412

Query: 341 DGK 343
            G+
Sbjct: 413 IGR 415



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 159/375 (42%), Gaps = 76/375 (20%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  + + Y+ +I  L +A    E  ++L  +      VP E+ +  ++    +A  LERA
Sbjct: 256 FPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKA-CVPTEVTYGILVNSLCKAGTLERA 314

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
            ++F  M++   +     + +L++     G++     LF +++E    PD  ++ ++I G
Sbjct: 315 EELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDG 374

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL------------------------ 197
              S   E A K F+EM++   +P +VT+ T+I GL                        
Sbjct: 375 LCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPD 434

Query: 198 -----------CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
                      C   R+DEA +L +++ +  +  P+ Q+++SL+ GLC  G +   L   
Sbjct: 435 SVTYICLLDGFCKLGRLDEAAQLLDELDKCSS-SPNLQLYSSLVNGLCDGGSVEKTLDDL 493

Query: 247 EEMVRDKIE-MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI----- 300
            E  +   E +D G+  S+I  L K GR +E   I + M   GCKP++ TYN LI     
Sbjct: 494 FEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCR 553

Query: 301 --------------------------------SGFCKEEDFEAAFTILDEMGDKGCKANP 328
                                            G CK  + + A  +L+E   +G  A+ 
Sbjct: 554 SRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADV 613

Query: 329 ISYNVILGGLCKDGK 343
           ++Y  +  GLC  G+
Sbjct: 614 VAYTALCTGLCYQGQ 628



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 143/308 (46%), Gaps = 20/308 (6%)

Query: 46  NLLHYDLII---TKLGR-AKMFDEMQQILHQLKHDTRIVPKEIIF-CNVIGFYGRARLLE 100
           N++ Y  II   +K+GR A  F  M+ ++          P  + + C + GF    RL E
Sbjct: 399 NVVTYTTIIQGLSKIGRVANAFRIMKGMIAH-----GCFPDSVTYICLLDGFCKLGRLDE 453

Query: 101 RALQMFDEM----SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYN 156
            A Q+ DE+    SS N+Q+     N L +       LD + E  +   + + P  C   
Sbjct: 454 -AAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCS- 511

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL--ELRVDEALKLKEDIM 214
            +I G   + RL++A ++F  MV    +P   T+  LI GLC   E RV+ A  L  D+ 
Sbjct: 512 -IIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLE 570

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           +V  + PD   +  L  GLC +GE+  A+ + EE        D   Y++L + L   G+ 
Sbjct: 571 KVGYL-PDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQV 629

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +   ++ +EM  +G  P++  Y  +I+G  K +  E A    DEM  KG K    +Y  +
Sbjct: 630 DRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTAL 689

Query: 335 LGGLCKDG 342
           +  LC  G
Sbjct: 690 VQALCHAG 697



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 131/262 (50%), Gaps = 4/262 (1%)

Query: 50  YDLIITKLGRAK--MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           Y+++I  L R++    +    +LH L+     +P  + +  +     +   ++RA++M +
Sbjct: 544 YNILINGLCRSRENRVERAFALLHDLEK-VGYLPDAVTYTPLCIGLCKIGEVDRAVKMLE 602

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSR 166
           E SS      V  +  L       G++DR   LFQ M  +  +PDA +Y  +I+G +  +
Sbjct: 603 EASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVK 662

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           +LEDA K FDEM+ +  +PT+ T+  L+  LC    VDEA    E ++    +     ++
Sbjct: 663 KLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIY 722

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
            +LI G C   ++  AL + E+M+       A   +SL   L ++G+  +   +L+EM  
Sbjct: 723 DALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAA 782

Query: 287 RGCKPNSVTYNALISGFCKEED 308
            G  P++ T+ A++ G  K ++
Sbjct: 783 GGSPPHAATFTAILDGLRKSDE 804


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/211 (35%), Positives = 114/211 (54%), Gaps = 1/211 (0%)

Query: 132 GKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           G  + M  + ++  K VSPD  SYN LI+G   +++L++A  +  EM      P  VT  
Sbjct: 13  GVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCT 72

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           TL+ GLC + R+DEA++L E  M+      D  ++ +LI G C  G L     + +EM+ 
Sbjct: 73  TLMDGLCKDGRMDEAMELLE-AMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLG 131

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
             I  +   YS L+  L + G+  E   +L  M E G  P+ VTY  LI G CK+     
Sbjct: 132 KGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATH 191

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           A  +L+ M +KG + + ++YNV+L GLCK+G
Sbjct: 192 AMDLLNLMVEKGEEPSNVTYNVLLSGLCKEG 222



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 146/306 (47%), Gaps = 5/306 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K    +++ Y+ +I  L +AK   E   +L +++      P  +    ++    +   ++
Sbjct: 27  KSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA-AGCFPNSVTCTTLMDGLCKDGRMD 85

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
            A+++ + M        V  + TL++     G LDR KELF +++ K +S +  +Y+ L+
Sbjct: 86  EAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLV 145

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           HG     + ++A  V + M +  + P +VT+  LI GLC + R   A+ L  ++M     
Sbjct: 146 HGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLL-NLMVEKGE 204

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +P    +  L+ GLC  G +  A  +   M+    + D   Y++L+  L   G+ +E   
Sbjct: 205 EPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALK 264

Query: 280 ILKEM--KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           +   M   E   +PN  T+N LI G CKE     A  I  +M  KG   N ++YN++LGG
Sbjct: 265 LFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGG 324

Query: 338 LCKDGK 343
             K GK
Sbjct: 325 CLKAGK 330



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 149/315 (47%), Gaps = 15/315 (4%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF--- 92
           EA   K F  +++ Y  +I+        D  +++  ++         + I  NV+ +   
Sbjct: 92  EAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEM-------LGKGISANVVTYSCL 144

Query: 93  -YGRARL--LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYV 148
            +G  RL   + A  + + M+   +   V  +  L++     G+     +L  +M EK  
Sbjct: 145 VHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGE 204

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
            P   +YN+L+ G      + DA+K+   M+++  +  +VT+ TL+ GLC + +VDEALK
Sbjct: 205 EPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALK 264

Query: 209 LKEDIMRVYN-VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           L   +    N ++P+   F  LI GLC  G L+ A+ +  +MV+     +   Y+ L+  
Sbjct: 265 LFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGG 324

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
             KAG+  E   + K++ + G  PNS TY+ LI GFCK      A  +  EM   G    
Sbjct: 325 CLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPA 384

Query: 328 PISYNVILGGLCKDG 342
              YN ++  LCK+G
Sbjct: 385 LFDYNTLMASLCKEG 399



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 98/188 (52%), Gaps = 1/188 (0%)

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           NI++ G   +  + +A  +  EM ++ + P +V++ TLI GLC   ++ EA+ L  + M 
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLE-ME 60

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
                P+     +L+ GLC  G +  A+ + E M +   + D  +Y +LIS     G  +
Sbjct: 61  AAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLD 120

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
               +  EM  +G   N VTY+ L+ G C+   ++ A T+L+ M + G   + ++Y  ++
Sbjct: 121 RGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLI 180

Query: 336 GGLCKDGK 343
            GLCKDG+
Sbjct: 181 DGLCKDGR 188



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 156/325 (48%), Gaps = 14/325 (4%)

Query: 25  FKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKL---GRAKMFDEMQQILHQLKHDTRIVP 81
           +K  N   N    H + P   +++ Y  +I  L   GRA    ++  ++ +   +    P
Sbjct: 154 WKEANTVLNAMAEHGIHP---DVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEE----P 206

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
             + +  ++    +  L+  A ++   M     +  V  +NTL+      GK+D   +LF
Sbjct: 207 SNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLF 266

Query: 142 QIM---EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
             M   E  + P+  ++N+LI G     RL  A K+  +MVK+     LVT+  L+ G  
Sbjct: 267 NSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCL 326

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              ++ EA++L + ++ +  V P+   ++ LI G C +  L++A G+  EM    +    
Sbjct: 327 KAGKIKEAMELWKQVLDLGFV-PNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPAL 385

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y++L+++L K G   +  ++ +EM    C+P+ +++N +I G  K  DF+    +  +
Sbjct: 386 FDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMK 445

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M + G + + ++++ ++  L K G+
Sbjct: 446 MVEMGLRPDALTFSTLINRLSKLGE 470



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 123/256 (48%), Gaps = 3/256 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ Y++++    +A    E  ++  Q+  D   VP    +  +I  + + R+L  A  +
Sbjct: 314 NLVTYNMLLGGCLKAGKIKEAMELWKQVL-DLGFVPNSFTYSILIDGFCKMRMLNIAKGL 372

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F EM +  +   +  +NTL+      G L++ K LFQ M      PD  S+N +I G + 
Sbjct: 373 FCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLK 432

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +   +   ++  +MV+  L+P  +TF TLI  L     +DEA K   + M      PD  
Sbjct: 433 AGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEA-KSALERMVASGFTPDAL 491

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           V+ SL+KGL + G+ +  + +  +M      +D  I S++++ L  + ++ +   +L   
Sbjct: 492 VYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVMELLPTF 551

Query: 285 KERGCKPNSVTYNALI 300
            +   +  S++ N L+
Sbjct: 552 FQGTSEGASISCNELL 567



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 125/300 (41%), Gaps = 36/300 (12%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLL 99
           K  + +++ Y+ ++  L      DE  ++ + +  ++  + P    F  +IG   +   L
Sbjct: 237 KGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRL 296

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNIL 158
            +A+++  +M        +  +N LL   L  GK+    EL+ Q+++    P++ +Y+IL
Sbjct: 297 TKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSIL 356

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI----- 213
           I G    R L  A  +F EM    L P L  + TL+  LC E  +++A  L +++     
Sbjct: 357 IDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANC 416

Query: 214 -----------------------------MRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
                                        M    ++PD   F++LI  L  +GEL  A  
Sbjct: 417 EPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKS 476

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
             E MV      DA +Y SL+  L   G   E   +L +M  +G   +    + +++  C
Sbjct: 477 ALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLC 536


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 136/249 (54%), Gaps = 2/249 (0%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDAC 153
           +A  +E+   +F+++ S+     V+ ++ L++     G+      +F  M ++  + DA 
Sbjct: 540 KAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDAR 599

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN ++ G   S ++  A+++ +EM ++ +QPT+ T+G ++ GL    R+DEA  L E+ 
Sbjct: 600 AYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEE- 658

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
            +   ++ +  +++SLI G   VG +  A  + EEM++  +  +   ++SL+ AL KA  
Sbjct: 659 AKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEE 718

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            NE     + MKE  C PN+ TY+ LI+G C+ + +  AF    +M  +G   N ++Y  
Sbjct: 719 INEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTT 778

Query: 334 ILGGLCKDG 342
           ++ GL K G
Sbjct: 779 MISGLAKVG 787



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 158/338 (46%), Gaps = 17/338 (5%)

Query: 8   LACLPRLQK-DPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEM 66
           L CL + +K D  L+L      +  PN +              Y++II  L      +E 
Sbjct: 361 LTCLGKKRKVDEALSLFEVMKKDAEPNSST-------------YNIIIDMLCLGGRVEEA 407

Query: 67  QQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126
            +IL +++H + + P  +    ++    +AR LE A ++F+  S          + +L++
Sbjct: 408 YRILDEMEHAS-LFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLID 466

Query: 127 PKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
                G++D    LF+ +++   + +   Y  LI    +  R ED  K+F E+++R  +P
Sbjct: 467 GLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKP 526

Query: 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
            L    T +  +     V++   + EDI R Y   PD + ++ LI GL   G+      +
Sbjct: 527 DLTLLNTYMDCVFKAGEVEKGRMIFEDI-RSYGFLPDVRSYSILIHGLTKAGQARETSNI 585

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
              M +    +DA  Y++++    K+G+ ++   IL+EMKE+  +P   TY A++ G  K
Sbjct: 586 FHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAK 645

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +  + A+ + +E   KG + N + Y+ ++ G  K G+
Sbjct: 646 IDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGR 683



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 139/296 (46%), Gaps = 9/296 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I  L +A    E   I H +K     +        V GF    ++  +A ++ +EM
Sbjct: 566 YSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKV-HKAYEILEEM 624

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME----KYVSPDACSYNILIHGCVVS 165
               VQ TV  +  +++      K+DR+ E + + E    K +  +   Y+ LI G    
Sbjct: 625 KEKCVQPTVATYGAIVD---GLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKV 681

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            R+++A+ + +EM+K+ L P + T+ +L+  L     ++EAL   +  M+     P+   
Sbjct: 682 GRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQS-MKEMKCPPNTYT 740

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           ++ LI GLC V + + A    ++M +  +  +   Y+++IS L K G   +  ++ +  K
Sbjct: 741 YSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFK 800

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             G  P++ ++NALI G         A+ + +E   +GC+ N  S   +L  L K 
Sbjct: 801 ANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRINIKSCISLLDALNKS 856



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 154/376 (40%), Gaps = 77/376 (20%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLF--------KNPNPNPNDTEAHPLKPFRYNLLHYDL 52
            PT+ + ++ L R  ++P LA   F          P+P P D   H + PF    LH+DL
Sbjct: 72  SPTADVVISVL-RSIRNPSLAAPFFLLASSSSASAPHPLPADAY-HAVLPF----LHHDL 125

Query: 53  ------------------------IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN 88
                                   +   L RA+  D+    +  ++   +  P    +  
Sbjct: 126 AALEKVLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLAVAVMRR-LKFRPAFSAYTV 184

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKY 147
           +IG    AR  ERAL++  +M     ++ V  F TL+      G++ D +  + ++    
Sbjct: 185 LIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSC 244

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + PD   YN+ I     +  ++ AWK F E+                             
Sbjct: 245 LEPDIVLYNVCIDCFGKAGNVDMAWKFFHEL----------------------------- 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
                  +   +KPD   + S+I  LC  G L  A  +  +M  ++    A  Y+++I  
Sbjct: 276 -------KAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMG 328

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
              AGR  +   +L+ ++ERGC P+ V++N++++   K+   + A ++ + M  K  + N
Sbjct: 329 YGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVM-KKDAEPN 387

Query: 328 PISYNVILGGLCKDGK 343
             +YN+I+  LC  G+
Sbjct: 388 SSTYNIIIDMLCLGGR 403


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 154/303 (50%), Gaps = 3/303 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + +++ Y+ ++  L +A  +++   +L  +     IVP  I F  ++  + +   L+
Sbjct: 257 KGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS-REIVPNVITFNVLLDVFVKEGKLQ 315

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
            A +++ EM +  +   +  +NTL++      +L     +  +M +   SPD  ++  LI
Sbjct: 316 EANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLI 375

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G  + +R++D  KVF  + KR L    VT+  L+ G C   ++  A +L ++ M  + V
Sbjct: 376 KGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE-MVSHGV 434

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   +  L+ GLC  G+L  AL + E++ + K+++   +Y+++I  + K G+  +   
Sbjct: 435 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWN 494

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +   +  +G KPN +TY  +ISG CK+     A  +L +M + G   N  +YN ++    
Sbjct: 495 LFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHL 554

Query: 340 KDG 342
           +DG
Sbjct: 555 RDG 557



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 147/300 (49%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEII-FCNVIGFYGRARLLERALQ 104
           +++ Y+ I+  + R+        +L +++   R V  ++  +  +I    R   ++ A+ 
Sbjct: 192 DVVTYNSIVNGICRSGDTSLALDLLRKMEE--RNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
           +F EM +  ++ +V  +N+L+      GK +    L + M  + + P+  ++N+L+   V
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 309

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              +L++A +++ EM+ R + P ++T+ TL+ G C++ R+ EA  +  D+M      PD 
Sbjct: 310 KEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML-DLMVRNKCSPDI 368

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             F SLIKG C V  +   + V   + +  +  +A  YS L+    ++G+      + +E
Sbjct: 369 VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE 428

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M   G  P+ +TY  L+ G C     E A  I +++         + Y  I+ G+CK GK
Sbjct: 429 MVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGK 488



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 124/264 (46%), Gaps = 2/264 (0%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD- 135
           +R +P  + F        R +     L    ++    +   +   N ++N    C K   
Sbjct: 82  SRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCF 141

Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
               L ++M+    PD  ++N LI G  +  ++ +A  + D MV+   QP +VT+ +++ 
Sbjct: 142 AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVN 201

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G+C       AL L    M   NVK D   ++++I  LC  G +  A+ + +EM    I+
Sbjct: 202 GICRSGDTSLALDLLRK-MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIK 260

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
                Y+SL+  L KAG+ N+   +LK+M  R   PN +T+N L+  F KE   + A  +
Sbjct: 261 SSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANEL 320

Query: 316 LDEMGDKGCKANPISYNVILGGLC 339
             EM  +G   N I+YN ++ G C
Sbjct: 321 YKEMITRGISPNIITYNTLMDGYC 344



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 131/265 (49%), Gaps = 4/265 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + + +++    R+     AL +  +M   NV+  V  ++T+++     G +D    L
Sbjct: 191 PDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISL 250

Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ ME K +     +YN L+ G   + +  D   +  +MV R + P ++TF  L+     
Sbjct: 251 FKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK 310

Query: 200 ELRVDEALKL-KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
           E ++ EA +L KE I R   + P+   + +L+ G C    LS A  + + MVR+K   D 
Sbjct: 311 EGKLQEANELYKEMITR--GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDI 368

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             ++SLI       R ++   + + + +RG   N+VTY+ L+ GFC+    + A  +  E
Sbjct: 369 VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE 428

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M   G   + ++Y ++L GLC +GK
Sbjct: 429 MVSHGVLPDVMTYGILLDGLCDNGK 453



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 107/216 (49%), Gaps = 36/216 (16%)

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFG------------TLIYGLCLELRVDE----- 205
           +V  + +DA  +F EM++ R  P+LV F              L+   C +L ++      
Sbjct: 64  IVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNI 123

Query: 206 ------------------ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
                             A  +   +M++   +PD   F +LIKGL   G++S A+ + +
Sbjct: 124 YTLNIMINCFCRCCKTCFAYSVLGKVMKL-GYEPDTTTFNTLIKGLFLEGKVSEAVVLVD 182

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
            MV +  + D   Y+S+++ + ++G  +    +L++M+ER  K +  TY+ +I   C++ 
Sbjct: 183 RMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDG 242

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +AA ++  EM  KG K++ ++YN ++ GLCK GK
Sbjct: 243 CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 168/343 (48%), Gaps = 45/343 (13%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + +    + ++  L + K +++ +++LH        VP E+ +  V+  Y +    E
Sbjct: 448 KGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRG-FVPDEVSYGTVMAAYFKEYNPE 506

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE----LFQIMEKYVSPDACSYN 156
            AL+++D+M    +  ++  +NTL+  K  C +++R+KE    L + +EK + PD  +YN
Sbjct: 507 PALRLWDQMIERKLIPSISTYNTLI--KGLC-RMERLKEAIDKLNEFVEKGLVPDETTYN 563

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           I+IH       LE+A++  ++MV+   +P +VT  TL+ GLCL  ++D+ALKL E  +  
Sbjct: 564 IIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVE- 622

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
              K D   + +LI+ +C VG++  AL   ++M    ++ DA  Y+ ++SAL +AGR  E
Sbjct: 623 KGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEE 682

Query: 277 FPAILKEMKERG----------CKPNSV--------------------------TYNALI 300
              +L ++ + G           KP+S                           TY   +
Sbjct: 683 AHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERL 742

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G C     + A  +LDEM  KG   +  +Y  ++ GL K  K
Sbjct: 743 NGLCTGGQLKEAKAVLDEMMQKGMPVDCSTYITLMEGLIKRQK 785



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 125/264 (47%), Gaps = 1/264 (0%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           R+ P    F  ++  +     L  AL     M  F +      +NTLLN     G L   
Sbjct: 203 RLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEA 262

Query: 138 KELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           + L   M++  ++P   +YN L+        ++ A KV + M     +P L T+  L  G
Sbjct: 263 RALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMG 322

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC   +VDEA +LK+++ R+    PD   + +L+         S AL + EEM    ++ 
Sbjct: 323 LCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKP 382

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
               ++ ++ +L K G+  E    L+++ E G  P+ +TYN LI  +CK  +   AFT++
Sbjct: 383 TLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLM 442

Query: 317 DEMGDKGCKANPISYNVILGGLCK 340
           DEM  KG K +  + N +L  LCK
Sbjct: 443 DEMVGKGLKMDTFTLNTVLYNLCK 466



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 140/296 (47%), Gaps = 5/296 (1%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA--RLLERALQMFDE 108
           D  ++   R ++     Q+LH L+    + P       V+    R+   L + +L +F  
Sbjct: 139 DAALSAYARLRLPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRS 198

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRR 167
           +    +      FN L++   + G L         M+ + +SPDA +YN L++       
Sbjct: 199 LIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGM 258

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           L +A  +   M +  + PT  T+ TL+        + +A K+ E  M  Y  +PD + + 
Sbjct: 259 LGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVES-MTAYGFEPDLRTYN 317

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEM-DAGIYSSLISALFKAGRKNEFPAILKEMKE 286
            L  GLC  G++  A  +K+EM R    + D   Y++L+ A FK    ++   +L+EM++
Sbjct: 318 VLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRD 377

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +G KP  VT+N ++   CKE   E A   L+++ ++G   + I+YN ++   CK G
Sbjct: 378 KGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAG 433



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 149/305 (48%), Gaps = 5/305 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  +  L+ +++++  L +    +E    L ++  +  + P  I +  +I  Y +A  + 
Sbjct: 378 KGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEG-LAPDVITYNTLIDAYCKAGNVA 436

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
           +A  + DEM    ++M     NT+L       + +  +EL     ++   PD  SY  ++
Sbjct: 437 KAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVM 496

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL-KLKEDIMRVYN 218
                    E A +++D+M++R+L P++ T+ TLI GLC   R+ EA+ KL E + +   
Sbjct: 497 AAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEK--G 554

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   +  +I   C  G+L  A     +MV +  + D    ++L++ L   G+ ++  
Sbjct: 555 LVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKAL 614

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            + +   E+G K + +TYN LI   CK  D + A    D+M  KG + +  +YNV+L  L
Sbjct: 615 KLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSAL 674

Query: 339 CKDGK 343
            + G+
Sbjct: 675 SEAGR 679



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 119/271 (43%), Gaps = 12/271 (4%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSF-NVQMTVKFFNTLLNP------KLTCGK 133
           P   +    +  Y R RL   A Q+   +     V+ +++  N +L+        L    
Sbjct: 133 PTSPLADAALSAYARLRLPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQAS 192

Query: 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           LD  + L ++    + P+  ++N+L+H       L DA      M    L P  VT+ TL
Sbjct: 193 LDVFRSLIELR---LHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTL 249

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           +   C +  + EA  L   + R   + P    + +L+     +G +  A  V E M    
Sbjct: 250 LNAHCRKGMLGEARALLARMKR-DGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYG 308

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK-PNSVTYNALISGFCKEEDFEAA 312
            E D   Y+ L   L +AG+ +E   +  EM+  G   P+ VTYN L+    K      A
Sbjct: 309 FEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDA 368

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +L+EM DKG K   +++N+++  LCK+GK
Sbjct: 369 LRLLEEMRDKGVKPTLVTHNIVVKSLCKEGK 399



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 110/266 (41%), Gaps = 37/266 (13%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I  L R +   E    L++   +  +VP E  +  +I  Y +   LE A +  ++M
Sbjct: 527 YNTLIKGLCRMERLKEAIDKLNEFV-EKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKM 585

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRL 168
              + +  V   NTL+N     GKLD+  +LF+  +EK    D  +YN LI        +
Sbjct: 586 VENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDV 645

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL------------------- 209
           + A   FD+M  + LQP   T+  ++  L    R +EA  +                   
Sbjct: 646 DTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLL 705

Query: 210 -----KEDIMRVYNVKPDGQ-----------VFASLIKGLCAVGELSLALGVKEEMVRDK 253
                 E  ++ +  KP+ +            +   + GLC  G+L  A  V +EM++  
Sbjct: 706 KPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQKG 765

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPA 279
           + +D   Y +L+  L K  ++    A
Sbjct: 766 MPVDCSTYITLMEGLIKRQKRQTHAA 791


>gi|413951888|gb|AFW84537.1| hypothetical protein ZEAMMB73_783984 [Zea mays]
          Length = 238

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 113/198 (57%), Gaps = 1/198 (0%)

Query: 143 IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR 202
           +M+    P++  YN LI+G   + ++ DA K++ EM      PT++T+ TLI GLC   +
Sbjct: 1   MMKDGCKPNSHVYNALINGFCRACKISDAVKIYIEMTGNGCCPTIITYNTLIDGLCKAEK 60

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
             EA  L ++++     KPD + + SLI+GLC V ++  AL +  E++   I++D  +++
Sbjct: 61  YQEASSLTKEMLE-RGFKPDIRTYGSLIRGLCRVKKIDAALCIWNEILDAGIQVDVIVHN 119

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
            LI  L  AG+ N+   I  EMKE+ C PN VTYN L+ GF +    + A ++   + D 
Sbjct: 120 ILIHGLCSAGKVNDAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDTAASLWAAILDN 179

Query: 323 GCKANPISYNVILGGLCK 340
           G K + ++YN  + GLC 
Sbjct: 180 GLKPDIVTYNTRIKGLCS 197



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 71/124 (57%)

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           KP+  V+ +LI G C   ++S A+ +  EM  +        Y++LI  L KA +  E  +
Sbjct: 7   KPNSHVYNALINGFCRACKISDAVKIYIEMTGNGCCPTIITYNTLIDGLCKAEKYQEASS 66

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + KEM ERG KP+  TY +LI G C+ +  +AA  I +E+ D G + + I +N+++ GLC
Sbjct: 67  LTKEMLERGFKPDIRTYGSLIRGLCRVKKIDAALCIWNEILDAGIQVDVIVHNILIHGLC 126

Query: 340 KDGK 343
             GK
Sbjct: 127 SAGK 130



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 117/262 (44%), Gaps = 35/262 (13%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P   ++  +I  + RA  +  A++++ EM+      T+  +NT                 
Sbjct: 8   PNSHVYNALINGFCRACKISDAVKIYIEMTGNGCCPTIITYNT----------------- 50

Query: 141 FQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
                            LI G   + + ++A  +  EM++R  +P + T+G+LI GLC  
Sbjct: 51  -----------------LIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYGSLIRGLCRV 93

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            ++D AL +  +I+    ++ D  V   LI GLC+ G+++ A  +  EM       +   
Sbjct: 94  KKIDAALCIWNEILDA-GIQVDVIVHNILIHGLCSAGKVNDAFCIYLEMKEKNCSPNLVT 152

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
           Y++L+   ++ G  +   ++   + + G KP+ VTYN  I G C          +L+E+ 
Sbjct: 153 YNTLMDGFYEIGSIDTAASLWAAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVL 212

Query: 321 DKGCKANPISYNVILGGLCKDG 342
             G   + I++++++  + + G
Sbjct: 213 ATGIMPSVITWSILVRAVIRYG 234



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 1/166 (0%)

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M+K   +P    +  LI G C   ++ +A+K+  + M      P    + +LI GLC   
Sbjct: 1   MMKDGCKPNSHVYNALINGFCRACKISDAVKIYIE-MTGNGCCPTIITYNTLIDGLCKAE 59

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           +   A  + +EM+    + D   Y SLI  L +  + +    I  E+ + G + + + +N
Sbjct: 60  KYQEASSLTKEMLERGFKPDIRTYGSLIRGLCRVKKIDAALCIWNEILDAGIQVDVIVHN 119

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            LI G C       AF I  EM +K C  N ++YN ++ G  + G 
Sbjct: 120 ILIHGLCSAGKVNDAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGS 165


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 152/304 (50%), Gaps = 2/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F   +L ++L+I    +AK  D   ++L ++  +   VP    F  +I    +A  + 
Sbjct: 178 KGFTPTVLMFNLVINGFCKAKDLDSAYKLL-EVMIEKGCVPNVFTFTILITGLCKANRVG 236

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
            A Q+ ++M +      V  ++T++N     G++D   ELFQ+ME+    P+  ++NILI
Sbjct: 237 EAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILI 296

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G   ++R+E+A +++  M +    P ++T+ +LI GLC   +VDEA +L + I      
Sbjct: 297 DGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVS 356

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
             +   +++L  G  A+G ++ A  +   +V      D   Y+SLI    K  R  E   
Sbjct: 357 AANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVE 416

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +++EM  +G  P   T +A++ G  +    E A  + D M  +GC  + + YN+++ G+ 
Sbjct: 417 LVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMA 476

Query: 340 KDGK 343
           +  K
Sbjct: 477 RASK 480



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 134/296 (45%), Gaps = 35/296 (11%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           +P +  +  +I  +  A  L+ A+Q+ +EM S   +       TL+      G++    E
Sbjct: 6   MPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALE 65

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
            F+ M K  +PD  +Y  L+H    + + ++A  +  EM+ R   P  VTF TLI GLC 
Sbjct: 66  HFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCK 125

Query: 200 ELRVDEALKLKEDIMR-------------------VYN----------------VKPDGQ 224
               ++A ++ ED+++                    YN                  P   
Sbjct: 126 FGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVL 185

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           +F  +I G C   +L  A  + E M+      +   ++ LI+ L KA R  E   +L++M
Sbjct: 186 MFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKM 245

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
              GC PN VTY+ +I+G CK+   + A+ +   M  + C  N +++N+++ GLCK
Sbjct: 246 VTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCK 301



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 149/303 (49%), Gaps = 9/303 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  ++  L +A  FDE Q +L ++       P  + F  +I    +    E+A ++
Sbjct: 77  DVMTYTALVHALCKAGKFDEAQGMLREMIARG-CAPDTVTFSTLIDGLCKFGSEEQAFRV 135

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM----KELFQIMEKYVSPDACSYNILIHG 161
            +++    +  +   F T++  +  C K + +    K L  ++ K  +P    +N++I+G
Sbjct: 136 LEDVIQRGMGNSDAAFETII--QRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVING 193

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              ++ L+ A+K+ + M+++   P + TF  LI GLC   RV EA +L E  M      P
Sbjct: 194 FCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEK-MVTGGCSP 252

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   ++++I GLC  G++  A  + + M R     +   ++ LI  L KA R  E   + 
Sbjct: 253 NVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLY 312

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK-ANPISYNVILGGLCK 340
             M+E GC P+ +TYN+LI G CK    + AF +   + + G   AN ++Y+ +  G   
Sbjct: 313 HRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAA 372

Query: 341 DGK 343
            G+
Sbjct: 373 LGR 375



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 107/233 (45%), Gaps = 38/233 (16%)

Query: 144 MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
           M +   P+  +Y ILI G   +  L+ A ++ +EM     +   V   TL+ GLC   RV
Sbjct: 1   MARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRV 60

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
            EAL+    + +  +  PD   + +L+  LC  G+   A G+  EM+      D   +S+
Sbjct: 61  VEALEHFRAMAK--DCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFST 118

Query: 264 LISALFKAGRKNEFPAILKEMKERG---------------CK------------------ 290
           LI  L K G + +   +L+++ +RG               C                   
Sbjct: 119 LIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAK 178

Query: 291 ---PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
              P  + +N +I+GFCK +D ++A+ +L+ M +KGC  N  ++ +++ GLCK
Sbjct: 179 GFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCK 231



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 140/337 (41%), Gaps = 40/337 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ ++++I  L +AK  +E +Q+ H+++ +T   P  I + ++I    ++  ++ A Q+
Sbjct: 288 NVVTHNILIDGLCKAKRIEEARQLYHRMR-ETGCAPDIITYNSLIDGLCKSFQVDEAFQL 346

Query: 106 FDEMSSFNVQMT-VKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI-HGC 162
           F  +    V       ++TL +     G++     +F ++ +K  SPD  +Y  LI   C
Sbjct: 347 FQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYC 406

Query: 163 VVSR----------------------------------RLEDAWKVFDEMVKRRLQPTLV 188
             SR                                    E A ++FD M  R      +
Sbjct: 407 KTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDAL 466

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIM--RVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
            +  ++ G+    + ++AL + E ++  R     P      +L++ LC VG    A  + 
Sbjct: 467 IYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLL 526

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
            +M           Y+ L+S L +  R +E   + + M   G  P   T N +IS  C  
Sbjct: 527 HKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSA 586

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              + A+ ++  M   GC  +  + N ++GG CK G+
Sbjct: 587 AKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGR 623



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           R C PN  TY  LI GF    D + A  +L+EM   G + N + +  ++ GLC  G+
Sbjct: 3   RICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGR 59


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 150/301 (49%), Gaps = 5/301 (1%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +N+   +++I  L R    D    +L ++     I P  I F  +I        ++ A++
Sbjct: 126 HNVYSLNILINCLCRLNHVDFSVSVLGKM-FKLGIHPDAITFNALINGLCNEGKIKEAVE 184

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV 163
           +F+EM     +  V  + T++N     G      ++F+ ME+    P+  +Y+ +I    
Sbjct: 185 LFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLC 244

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-KEDIMRVYNVKPD 222
             R + DA +   EMV+R + P + T+ ++++G C   +++EA +L KE + R  +V P+
Sbjct: 245 KDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGR--DVMPN 302

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              F  L+ GLC  G +S A  V E M    +E D   Y++L+         NE   + +
Sbjct: 303 TVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFE 362

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            M  +GC P + +YN LI+G+CK    + A ++L EM  K    + ++Y+ ++ GLC+ G
Sbjct: 363 IMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLG 422

Query: 343 K 343
           +
Sbjct: 423 R 423



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 147/297 (49%), Gaps = 3/297 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y+ I+         +E  ++  ++     ++P  + F  ++    +  ++  A  +
Sbjct: 267 NVFTYNSIVHGFCNLGQLNEATRLFKEMV-GRDVMPNTVTFTILVDGLCKEGMVSEARLV 325

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F+ M+   V+  +  +N L++       ++  K++F+IM  K  +P A SYNILI+G   
Sbjct: 326 FETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCK 385

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           SRR+++A  +  EM  + L P  VT+ TL+ GLC   R  EAL L ++ M  Y   P+  
Sbjct: 386 SRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKE-MCSYGPHPNLV 444

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  L+ G C  G L  AL + + M   K+E +   Y+ LI  +F AG+      +  ++
Sbjct: 445 TYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKL 504

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
              G +P+  TY  +I G  KE   + A+ +  +M D G   N  SYNV++ G  ++
Sbjct: 505 FGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQN 561



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 142/299 (47%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L +         +  +++ +    P  + +  +I    + RL+  A++ 
Sbjct: 197 NVISYTTVINGLCKTGNTSMAVDVFKKMEQNG-CKPNVVTYSTIIDSLCKDRLVNDAMEF 255

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             EM    +   V  +N++++     G+L+    LF +++ + V P+  ++ IL+ G   
Sbjct: 256 LSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCK 315

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              + +A  VF+ M ++ ++P + T+  L+ G CL+  ++EA K+ E ++R     P   
Sbjct: 316 EGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIR-KGCAPGAH 374

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LI G C    +  A  +  EM    +  D   YS+L+  L + GR  E   + KEM
Sbjct: 375 SYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEM 434

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  PN VTY  L+ GFCK    + A  +L  M +K  + N + Y +++ G+   GK
Sbjct: 435 CSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGK 493



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 146/300 (48%), Gaps = 7/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERAL 103
           N++ Y  II  L + ++ ++  + L ++    R +P  +   N I  GF    +L E A 
Sbjct: 232 NVVTYSTIIDSLCKDRLVNDAMEFLSEMVE--RGIPPNVFTYNSIVHGFCNLGQLNE-AT 288

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGC 162
           ++F EM   +V      F  L++     G +   + +F+ M EK V PD  +YN L+ G 
Sbjct: 289 RLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGY 348

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
            + R + +A KVF+ M+++   P   ++  LI G C   R+DEA  L  + M    + PD
Sbjct: 349 CLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAE-MYHKALNPD 407

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              +++L++GLC +G    AL + +EM       +   Y  L+    K G  +E   +LK
Sbjct: 408 TVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLK 467

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            MKE+  +PN V Y  LI G       E A  +  ++   G + +  +Y V++ GL K+G
Sbjct: 468 SMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEG 527



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 125/245 (51%), Gaps = 2/245 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           ++ AL  F  M   N + +V  F   L       +   +  L   M+ + V+ +  S NI
Sbjct: 74  VDDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNI 133

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+       ++ +  V  +M K  + P  +TF  LI GLC E ++ EA++L  ++++  
Sbjct: 134 LINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRG 193

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           + +P+   + ++I GLC  G  S+A+ V ++M ++  + +   YS++I +L K    N+ 
Sbjct: 194 H-EPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDA 252

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
              L EM ERG  PN  TYN+++ GFC       A  +  EM  +    N +++ +++ G
Sbjct: 253 MEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDG 312

Query: 338 LCKDG 342
           LCK+G
Sbjct: 313 LCKEG 317



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 100/209 (47%), Gaps = 1/209 (0%)

Query: 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           D +   ++++     P    +   +      ++      + ++M   R+   + +   LI
Sbjct: 76  DALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILI 135

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
             LC    VD ++ +   + ++  + PD   F +LI GLC  G++  A+ +  EMV+   
Sbjct: 136 NCLCRLNHVDFSVSVLGKMFKL-GIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGH 194

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           E +   Y+++I+ L K G  +    + K+M++ GCKPN VTY+ +I   CK+     A  
Sbjct: 195 EPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAME 254

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
            L EM ++G   N  +YN I+ G C  G+
Sbjct: 255 FLSEMVERGIPPNVFTYNSIVHGFCNLGQ 283


>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
          Length = 414

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 141/298 (47%), Gaps = 36/298 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           + + +++++  L R        ++L +L+ D   +P  + F +VI  Y +A  LE A+ +
Sbjct: 116 DTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAV 175

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
           +++M +  +                                   P+  +YN+LI+G    
Sbjct: 176 YNDMVASGIM----------------------------------PNTVTYNVLINGYGKV 201

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             L  A +V+ +M + R  P +VTF +LI G C   ++D+AL++  D M  + ++P+   
Sbjct: 202 GDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSD-MAQHRIQPNVYT 260

Query: 226 FASLIKGLCAVGELSLALGVKEEM-VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           F+ +I  LC       A+G+  E+ +R  I   A IY+ +I  L K G+ +E   I K M
Sbjct: 261 FSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGM 320

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +E+GC+P+  TY  LI G+C +     A     EM + GC  + I+ N  +  L K G
Sbjct: 321 EEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAG 378



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 120/250 (48%), Gaps = 2/250 (0%)

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDAC 153
           A LL+ +  +  + S F  ++    +N L++  +  G++  +  LF+  I ++  SPD  
Sbjct: 24  ANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVW 83

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           S+N++I G     +++ A ++ + M +    P  VT   L+ GLC    V    ++   +
Sbjct: 84  SFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRL 143

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
            R     P+   F S+I G C  G+L  A+ V  +MV   I  +   Y+ LI+   K G 
Sbjct: 144 QRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGD 203

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
                 + ++M    C P+ VT+++LI G+C+    + A  I  +M     + N  ++++
Sbjct: 204 LGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSI 263

Query: 334 ILGGLCKDGK 343
           I+  LCK  +
Sbjct: 264 IIHSLCKQNR 273


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 149/302 (49%), Gaps = 3/302 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + N++ Y  ++     A    +M  + + +  D  IVP + +F  ++  Y +  ++ 
Sbjct: 345 KGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDG-IVPNQHVFNILVNGYAKCGMVR 403

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILI 159
            A+ +F++M    +   V  +  +++     G +D  M +   +++K V P+   Y  LI
Sbjct: 404 EAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLI 463

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G      L  A ++  E+  + L P +++F +LI  LC E RV EA ++ + I+R    
Sbjct: 464 QGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRT-GE 522

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           K D  +F SLI G C +G++S A  V + MV   IE D   Y +L++   K GR ++   
Sbjct: 523 KADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLI 582

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + +E+  +G KP + TY  ++ G        AA  +  EM + G      +Y+++L GLC
Sbjct: 583 LFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLC 642

Query: 340 KD 341
           ++
Sbjct: 643 RN 644



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 156/368 (42%), Gaps = 71/368 (19%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQL-------------------------KHDTR-- 78
           N++ Y+ +I  L +A+  D+ Q IL Q+                         K   R  
Sbjct: 245 NVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMF 304

Query: 79  -------IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131
                  ++P  +     + F  +   +E A + FD M +   ++ +  ++TLL+   T 
Sbjct: 305 KEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATA 364

Query: 132 GKLDRMKELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           G L  M  LF +M +  + P+   +NIL++G      + +A  +F++M KR L P ++T+
Sbjct: 365 GCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTY 424

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA-------- 242
             +I+  C    +D+A+  K + M    V+P+  V+  LI+G C  G+L  A        
Sbjct: 425 LAVIHAFCRMGSMDDAMD-KFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIR 483

Query: 243 ---LG------------------------VKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
              LG                        + + ++R   + D  I++SLI      G+ +
Sbjct: 484 NKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMS 543

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E   +   M   G +P+ VTY  L++G CK    +    +  E+  KG K    +Y +IL
Sbjct: 544 EAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIIL 603

Query: 336 GGLCKDGK 343
            GL   G+
Sbjct: 604 DGLFHAGR 611



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 114/252 (45%), Gaps = 5/252 (1%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIM-EKYVSPDA 152
           RAR L+ A   F  +    ++  V   ++LL       + D   + LF  M E    PDA
Sbjct: 115 RARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDVLFHRMPELGCVPDA 174

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRR--LQPTLVTFGTLIYGLCLELRVDEALKLK 210
            SY+ ++       R + A  +    VK+       +V + T+++GL  E +V EA  L 
Sbjct: 175 ISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHGLFKEGKVGEACDLF 234

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
            + M    V P+   + S+I  LC    +  A G+  +MV + ++ D   Y++LI     
Sbjct: 235 HE-MTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYST 293

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            G+  +   + KEM  RG  PN+VT +  ++  CK    E A    D M  KG K N IS
Sbjct: 294 LGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIIS 353

Query: 331 YNVILGGLCKDG 342
           Y+ +L G    G
Sbjct: 354 YSTLLHGYATAG 365



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 111/255 (43%), Gaps = 39/255 (15%)

Query: 126 NPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
            P L     +RM        +   P   +Y+ILI  C  +RRL+ A+  F  ++++ ++ 
Sbjct: 79  GPALAVALFNRMST--GTGPRVALPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKA 136

Query: 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL-- 243
            ++   +L+ GLC   R DEA+ +    M      PD   +++++K +C  G    AL  
Sbjct: 137 DVIVVSSLLRGLCDAKRTDEAVDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDI 196

Query: 244 ---GVKE--------------------------------EMVRDKIEMDAGIYSSLISAL 268
               VK+                                EM +  +  +   Y+S+I AL
Sbjct: 197 LRMAVKQGGGCPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHAL 256

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            KA   ++   IL++M   G +P++VTYN LI G+     ++ A  +  EM  +G   N 
Sbjct: 257 CKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNT 316

Query: 329 ISYNVILGGLCKDGK 343
           ++ +  +  LCK G+
Sbjct: 317 VTCSTFVAFLCKHGR 331



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 118/252 (46%), Gaps = 9/252 (3%)

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PD 151
            R+ E A ++FD +     +  V  F +L++     GK   M E F++ +  VS    PD
Sbjct: 505 GRVFE-AQRIFDMIIRTGEKADVNIFTSLIDGYCLIGK---MSEAFRVHDAMVSVGIEPD 560

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +Y  L++GC  + R++D   +F E++ + ++PT  T+G ++ GL    R   A ++ +
Sbjct: 561 IVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQ 620

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           +++    +      ++ L+ GLC       A+ V +++    ++ D  I + +IS +FKA
Sbjct: 621 EMIE-SGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKA 679

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
            R+ E   +   + + G  P   TY  ++    KE   E A  +   M   G        
Sbjct: 680 RRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSGLSPTSHFI 739

Query: 332 NVILGGLCKDGK 343
           NVI+  L + G+
Sbjct: 740 NVIVRTLLEKGE 751



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 129/288 (44%), Gaps = 6/288 (2%)

Query: 60  AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY---GRARLLERALQMFDEMSSFNVQM 116
           AK  DE   +L     +   VP  I +  V+      GR++     L+M  +        
Sbjct: 151 AKRTDEAVDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGG-GCPC 209

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVF 175
            V  ++T+++     GK+    +LF  M ++ V P+  +YN +IH    +R ++ A  + 
Sbjct: 210 NVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGIL 269

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
            +MV   +QP  VT+ TLI+G     +  +A+++ ++ M    V P+    ++ +  LC 
Sbjct: 270 RQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKE-MTSRGVIPNTVTCSTFVAFLCK 328

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G +  A    + M+    +++   YS+L+     AG   +   +   M   G  PN   
Sbjct: 329 HGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHV 388

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +N L++G+ K      A  I ++M  +G   + ++Y  ++   C+ G 
Sbjct: 389 FNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGS 436


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 131/248 (52%), Gaps = 4/248 (1%)

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDA 152
            + RL +   +++ +M+   V+  +  +N L++     G +++   L   ME K V PD 
Sbjct: 176 AKDRLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDL 235

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN LI          +A  V D M +  ++P +VT+ +LI+G C E R+ EA++L ++
Sbjct: 236 FTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKE 295

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           I    +  P+   + +LI G C + +L  AL ++EEM    +      Y+S++  L + G
Sbjct: 296 IR---DATPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIG 352

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           R  +   +L EM E+  +P++VT N LI+ +CK  D ++A  + + M + G K +  +Y 
Sbjct: 353 RIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYK 412

Query: 333 VILGGLCK 340
            ++ G CK
Sbjct: 413 ALIHGFCK 420



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 141/295 (47%), Gaps = 3/295 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y+++I    ++   ++   +L +++    + P    +  +I  Y +  +   AL +
Sbjct: 199 NIHVYNVLIHACCKSGDVEKADNLLSEMESKC-VFPDLFTYNTLISLYCKKGMHYEALSV 257

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
            D M    ++  +  +N+L++     G++     LF+ +    +P+  +Y  LI G    
Sbjct: 258 QDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRD-ATPNHVTYTTLIDGYCRL 316

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             L+ A ++ +EM  + L PT+VT+ +++  LC   R+ +A KL  + M    ++PD   
Sbjct: 317 NDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNE-MSEKKIEPDNVT 375

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
             +LI   C +G++  AL VK  MV   +++D   Y +LI    K    +    +L  M 
Sbjct: 376 CNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSML 435

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + G  P+  TY+ L+ G+C +++ EA   + DE   KG   +   Y  ++   CK
Sbjct: 436 DAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCK 490



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 131/263 (49%), Gaps = 12/263 (4%)

Query: 85  IFCNVIGFYGRARLLERALQMFDEM--SSF--NVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           +F  ++  Y   ++ + A+Q+F+ M  + F  ++       N+L   +LT    D + ++
Sbjct: 132 VFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLT----DMVWKV 187

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           ++ M +  V  +   YN+LIH C  S  +E A  +  EM  + + P L T+ TLI   C 
Sbjct: 188 YKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCK 247

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +    EAL + +D M    +KPD   + SLI G C  G +  A+ + +E +RD    +  
Sbjct: 248 KGMHYEALSV-QDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKE-IRDATP-NHV 304

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI    +    ++   + +EM+ +G  P  VTYN+++   C+      A  +L+EM
Sbjct: 305 TYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEM 364

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
            +K  + + ++ N ++   CK G
Sbjct: 365 SEKKIEPDNVTCNTLINAYCKIG 387



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 94/192 (48%), Gaps = 10/192 (5%)

Query: 159 IHGCVV------SRRLED-AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
           +H C V        RL D  WKV+ +M +  ++  +  +  LI+  C    V++A  L  
Sbjct: 165 LHACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLS 224

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           + M    V PD   + +LI   C  G    AL V++ M R+ I+ D   Y+SLI    K 
Sbjct: 225 E-MESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKE 283

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           GR  E   + KE+  R   PN VTY  LI G+C+  D + A  + +EM  +G     ++Y
Sbjct: 284 GRMREAMRLFKEI--RDATPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTY 341

Query: 332 NVILGGLCKDGK 343
           N IL  LC+ G+
Sbjct: 342 NSILRKLCEIGR 353



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 133/285 (46%), Gaps = 8/285 (2%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           E   +KP   +++ Y+ +I    +     E  ++  +++  T   P  + +  +I  Y R
Sbjct: 262 EREGIKP---DIVTYNSLIHGFCKEGRMREAMRLFKEIRDAT---PNHVTYTTLIDGYCR 315

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACS 154
              L++AL++ +EM +  +  TV  +N++L      G++ D  K L ++ EK + PD  +
Sbjct: 316 LNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVT 375

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
            N LI+       ++ A KV + MV+  L+    T+  LI+G C    +D A +L   ++
Sbjct: 376 CNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSML 435

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
                 P    ++ L+ G C        L + +E VR  + +D  +Y +LI    K  + 
Sbjct: 436 DA-GFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQV 494

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           +    I   M+E+G   +SV Y +L   + K     AA  +LDEM
Sbjct: 495 DYAKKIFSLMQEKGTLGDSVIYTSLAYAYWKLGKANAASDLLDEM 539



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 1/139 (0%)

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           EA+++ E +M V   +P       L+  L       +   V ++M R  +E +  +Y+ L
Sbjct: 148 EAIQVFEHMM-VNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVL 206

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           I A  K+G   +   +L EM+ +   P+  TYN LIS +CK+     A ++ D M  +G 
Sbjct: 207 IHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGI 266

Query: 325 KANPISYNVILGGLCKDGK 343
           K + ++YN ++ G CK+G+
Sbjct: 267 KPDIVTYNSLIHGFCKEGR 285



 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/93 (21%), Positives = 42/93 (45%)

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           + D  ++++ ++S L+        K E   + + M   G +P+      L++   K+   
Sbjct: 122 LHDDPDINSHVFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLT 181

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +  + +  +M   G +AN   YNV++   CK G
Sbjct: 182 DMVWKVYKKMARIGVEANIHVYNVLIHACCKSG 214


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 156/302 (51%), Gaps = 3/302 (0%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
            R +++ Y  +I  L  A   D+  +++ ++  ++ I P  +++ +++  Y ++   E  
Sbjct: 146 VRADVVTYGTLIRGLCDAAEVDKAVELMGEM-CESGIEPNVVVYSSLLQGYCKSGRWEDV 204

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG 161
            ++F EMS   ++  V  +  L++     GK  +   +  +M  + + P+  +YN+LI+ 
Sbjct: 205 GKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINC 264

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN-VK 220
                 +++A  V  +M ++ + P +VT+ TLI GL   L +DEA+ L E+++R  N VK
Sbjct: 265 MCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVK 324

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   F S+I+GLC +G +  A  V+  M      ++   Y+ LI  L +  +  +   +
Sbjct: 325 PNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMEL 384

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + EM   G +P+S TY+ LI GFCK    + A  +L  M D+G +     Y  +L  +C+
Sbjct: 385 MDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCE 444

Query: 341 DG 342
            G
Sbjct: 445 QG 446



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 121/244 (49%), Gaps = 8/244 (3%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM----EKYVSPDACS 154
           L  A  + D + S    ++   +NT+L      G  DR   L + M         P+A S
Sbjct: 61  LGEATSLLDALPSVRDAVS---YNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVS 117

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           Y +L+      R  + A  +   M    ++  +VT+GTLI GLC    VD+A++L  ++ 
Sbjct: 118 YTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC 177

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
               ++P+  V++SL++G C  G       V  EM    IE D  +Y+ LI +L K G+ 
Sbjct: 178 E-SGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKA 236

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            +   ++  M  RG +PN VTYN LI+  CKE   + A  +L +M +KG   + ++YN +
Sbjct: 237 KKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTL 296

Query: 335 LGGL 338
           + GL
Sbjct: 297 IKGL 300



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 97/196 (49%), Gaps = 4/196 (2%)

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKR---RLQPTLVTFGTLIYGLCLELRVDEAL 207
           DA SYN ++         + A  +   M        +P  V++  L+  LC +   D+A+
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAV 135

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            L    MR   V+ D   + +LI+GLC   E+  A+ +  EM    IE +  +YSSL+  
Sbjct: 136 GLLRS-MRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQG 194

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
             K+GR  +   +  EM E+G +P+ V Y  LI   CK    + A  ++D M  +G + N
Sbjct: 195 YCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPN 254

Query: 328 PISYNVILGGLCKDGK 343
            ++YNV++  +CK+G 
Sbjct: 255 VVTYNVLINCMCKEGS 270



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 141/304 (46%), Gaps = 12/304 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+++I  + +     E   +L ++  +  + P  + +  +I        ++ A+ +
Sbjct: 254 NVVTYNVLINCMCKEGSVKEAIGVLKKMS-EKGVAPDVVTYNTLIKGLSDVLEMDEAMWL 312

Query: 106 FDEMSSFN--VQMTVKFFNTLLNPKLTCGKLDRMKELFQIM----EKYVSPDACSYNILI 159
            +EM      V+  V  FN+++      G   RM++ FQ+     E     +  +YN+LI
Sbjct: 313 LEEMVRGKNIVKPNVVTFNSVIQGLCDIG---RMRQAFQVRAMMEETGCMVNLVTYNLLI 369

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G +   ++  A ++ DEM    L+P   T+  LI G C   +VD A  L    MR   +
Sbjct: 370 GGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLS-TMRDRGI 428

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +P+   +  L+  +C  G +  A  +  EM  +   +D   YS++I    KAG       
Sbjct: 429 EPELFHYIPLLVAMCEQGMMERARNLFNEM-DNNFPLDVVAYSTMIHGACKAGDLKTAKE 487

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +LK + + G  P++VTY+ +I+ F K  D EAA  +L +M   G   +   ++ ++ G  
Sbjct: 488 LLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYS 547

Query: 340 KDGK 343
             G+
Sbjct: 548 TKGE 551



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 125/276 (45%), Gaps = 4/276 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV-PKEIIFCNVIGFYGRARLLERALQ 104
           +++ Y+ +I  L      DE   +L ++     IV P  + F +VI        + +A Q
Sbjct: 289 DVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQ 348

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV 163
           +   M      + +  +N L+   L   K+ +  EL   M    + PD+ +Y+ILI G  
Sbjct: 349 VRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFC 408

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              +++ A  +   M  R ++P L  +  L+  +C +  ++ A  L  ++    N   D 
Sbjct: 409 KMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDN--NFPLDV 466

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             ++++I G C  G+L  A  + + +V + +  DA  YS +I+   K+G       +LK+
Sbjct: 467 VAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQ 526

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           M   G  P+   +++LI G+  + +      ++ EM
Sbjct: 527 MTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREM 562



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 111/241 (46%), Gaps = 5/241 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ Y+L+I  L R     +  +++ ++     + P    +  +I  + +   ++RA  +
Sbjct: 361 NLVTYNLLIGGLLRVHKVRKAMELMDEMT-SLGLEPDSFTYSILIKGFCKMWQVDRAEDL 419

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
              M    ++  +  +  LL      G ++R + LF  M+     D  +Y+ +IHG   +
Sbjct: 420 LSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKA 479

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             L+ A ++   +V   L P  VT+  +I        ++ A  + +  M      PD  V
Sbjct: 480 GDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQ-MTASGFLPDVAV 538

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F SLI+G    GE++  L +  EM+   I +D+ I S+L ++L  +   NE  A+L+ + 
Sbjct: 539 FDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTLSTSLVAS---NEGKALLQSLP 595

Query: 286 E 286
           +
Sbjct: 596 D 596



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 105/240 (43%), Gaps = 3/240 (1%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKY 147
           +IG   R   + +A+++ DEM+S  ++     ++ L+       ++DR ++L   M ++ 
Sbjct: 368 LIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRG 427

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P+   Y  L+        +E A  +F+EM        +V + T+I+G C    +  A 
Sbjct: 428 IEPELFHYIPLLVAMCEQGMMERARNLFNEM-DNNFPLDVVAYSTMIHGACKAGDLKTAK 486

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           +L + I+    + PD   ++ +I      G++  A GV ++M       D  ++ SLI  
Sbjct: 487 ELLKSIVD-EGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQG 545

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
               G  N+   +++EM  +    +S   + L +      + +A    L +   +  K N
Sbjct: 546 YSTKGEINKVLELIREMITKNIALDSKIISTLSTSLVASNEGKALLQSLPDFSAEISKGN 605


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 139/304 (45%), Gaps = 12/304 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   ++++I    R +  D+       +K   R  P    F  ++    +A + E+A ++
Sbjct: 153 NTFSFNILIRSFARTRRADDAVTCFEIMKRK-RCKPDLHTFLILVDCLCKAGMDEKAFEV 211

Query: 106 FDEMSSFNV-----QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
           F EM +         +      TLL  K    ++   +E+F  MEK    PDA +YN +I
Sbjct: 212 FHEMMAMGFVPPDRALHTAMVRTLLKAK----RVKEAREVFGQMEKCGFPPDAIAYNTMI 267

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G   +   ++A KV D M+ +   PT VT+G L+  LC    ++ A +L   +M     
Sbjct: 268 DGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFR-VMAASGF 326

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +P+  ++ SLI G    G +  A  + +EMV      D   ++ +I  L K+G   +   
Sbjct: 327 RPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAK 386

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
             +EM   GCKPN VTY  +I G  K      AF I+  M   GC  + ++Y  +L G C
Sbjct: 387 SFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFC 446

Query: 340 KDGK 343
           K G+
Sbjct: 447 KLGR 450



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 144/303 (47%), Gaps = 4/303 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F++++  Y+ ++  L   K + +   I H+      I P    F  +I  + R R  + A
Sbjct: 115 FQHDVFTYNCLMNLLVAEKNYSQCYAI-HEEMLKAGIAPNTFSFNILIRSFARTRRADDA 173

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYNILIH 160
           +  F+ M     +  +  F  L++     G  ++  E+F  M    +V PD   +  ++ 
Sbjct: 174 VTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVR 233

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
             + ++R+++A +VF +M K    P  + + T+I GL       EALK+ ++++    V 
Sbjct: 234 TLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACV- 292

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P    +  L+  LC  G L  A  +   M       ++ IY+SLI    K+GR  E  ++
Sbjct: 293 PTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSL 352

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             EM E G +P+ +T+  +I G CK  +FE A    +EM   GCK N ++Y  I+ GL K
Sbjct: 353 FDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSK 412

Query: 341 DGK 343
            G+
Sbjct: 413 IGR 415



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 160/375 (42%), Gaps = 76/375 (20%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  + + Y+ +I  L +A    E  ++L  +      VP E+ +  ++    +A  LERA
Sbjct: 256 FPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKA-CVPTEVTYGILVNSLCKAGTLERA 314

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
            ++F  M++   +     + +L++     G++     LF +++E    PD  ++ ++I G
Sbjct: 315 EELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDG 374

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL------------------------ 197
              S   E A K F+EM++   +P +VT+ T+I GL                        
Sbjct: 375 LCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPD 434

Query: 198 -----------CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
                      C   R+DEA +L +++ +  +  P+ Q+++SL+KGLC  G +   L   
Sbjct: 435 SVTYICLLDGFCKLGRLDEAAQLLDELDKCSS-SPNLQLYSSLVKGLCDGGSVENTLDDL 493

Query: 247 EEMVRDKIE-MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI----- 300
            E  +   E +D G+  S+I  L K GR +E   I + M   GCKP++ TYN LI     
Sbjct: 494 FEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCR 553

Query: 301 --------------------------------SGFCKEEDFEAAFTILDEMGDKGCKANP 328
                                            G CK  + + A  +L+E   +G  A+ 
Sbjct: 554 SRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADV 613

Query: 329 ISYNVILGGLCKDGK 343
           ++Y  +  GLC  G+
Sbjct: 614 VAYTALCTGLCYQGQ 628



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 131/263 (49%), Gaps = 6/263 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIV---PKEIIFCNVIGFYGRARLLERALQMF 106
           Y+++I  L R++  +   +    L HD  +V   P  + +  +     +   ++RA++M 
Sbjct: 544 YNILINGLCRSR--ENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKML 601

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVS 165
           +E SS      V  +  L       G++DR   LFQ M  +  +PDA +Y  +I+G +  
Sbjct: 602 EEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKG 661

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
           ++LEDA K FDEM+ +  +PT+ T+  L+  LC    VDEA    E ++    +     +
Sbjct: 662 KKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMI 721

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + +LI G C   ++  AL + E+M+       A   +SL   L ++G+  +   +L+EM 
Sbjct: 722 YDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMA 781

Query: 286 ERGCKPNSVTYNALISGFCKEED 308
             G  P++ T+ A++ G  K ++
Sbjct: 782 AGGSPPHAATFTAILDGLRKSDE 804



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 141/308 (45%), Gaps = 20/308 (6%)

Query: 46  NLLHYDLII---TKLGR-AKMFDEMQQILHQLKHDTRIVPKEIIF-CNVIGFYGRARLLE 100
           N++ Y  II   +K+GR A  F  M+ ++          P  + + C + GF    RL E
Sbjct: 399 NVVTYTTIIQGLSKIGRVANAFRIMKGMIAH-----GCFPDSVTYICLLDGFCKLGRLDE 453

Query: 101 RALQMFDEM----SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYN 156
            A Q+ DE+    SS N+Q+       L +       LD + E  +   + + P  C   
Sbjct: 454 -AAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCS- 511

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL--ELRVDEALKLKEDIM 214
            +I G   + RL++A ++F  MV    +P   T+  LI GLC   E RV+ A  L  D+ 
Sbjct: 512 -IIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLE 570

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
            V  + PD   +  L  GLC +GE+  A+ + EE        D   Y++L + L   G+ 
Sbjct: 571 MVGYL-PDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQV 629

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +   ++ +EM  +G  P++  Y  +I+G  K +  E A    DEM  KG K    +Y  +
Sbjct: 630 DRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTAL 689

Query: 335 LGGLCKDG 342
           +  LC  G
Sbjct: 690 VQALCHAG 697



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 146/351 (41%), Gaps = 63/351 (17%)

Query: 43  FRYNLLHYDLII---TKLGRAK----MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           FR N + Y  +I    K GR K    +FDEM +  ++        P  I    +I    +
Sbjct: 326 FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYR--------PDVITHTVMIDGLCK 377

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PD 151
           +   E+A + F+EM     +  V  + T++       K+ R+   F+IM+  ++    PD
Sbjct: 378 SGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQ---GLSKIGRVANAFRIMKGMIAHGCFPD 434

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK--L 209
           + +Y  L+ G     RL++A ++ DE+ K    P L  + +L+ GLC    V+  L    
Sbjct: 435 SVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLF 494

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
           ++      N+ P   +  S+I GLC  G L  A  + + MV +  + DA  Y+ LI+ L 
Sbjct: 495 EQSKAAAENLDPG--LCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLC 552

Query: 270 KA-------------------------------------GRKNEFPAILKEMKERGCKPN 292
           ++                                     G  +    +L+E   RG   +
Sbjct: 553 RSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNAD 612

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            V Y AL +G C +   + A ++  EM  +G   +  +Y  I+ GL K  K
Sbjct: 613 VVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKK 663


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 150/304 (49%), Gaps = 6/304 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLER 101
            R N   Y+ +I     A M+ E  ++  ++   + ++P  ++ CN  I    R   ++ 
Sbjct: 223 IRPNNKTYNSLIYGYSTAGMWKESVRVFKEMS-SSGLIPC-VVNCNSFIHALCRHNRIKE 280

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIH 160
           A  +FD M     +  +  ++TLL+     G    M  L  +M  K + P+   +NILI+
Sbjct: 281 AKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILIN 340

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                  ++ A  +F++M  + + P  VTF T+I  LC   R+D+AL  K + M    V 
Sbjct: 341 AYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALH-KFNHMVDIGVP 399

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY-SSLISALFKAGRKNEFPA 279
           P   V+  LI+G C  GEL  A  +  EM+   I      Y SS+I+ LFK GR  E   
Sbjct: 400 PSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKD 459

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           I+  M + G +PN VT+N+L+ G+C   + E AF +LD M   G + N   Y  ++ G C
Sbjct: 460 IMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYC 519

Query: 340 KDGK 343
           K+G+
Sbjct: 520 KNGR 523



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 145/304 (47%), Gaps = 4/304 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LK  + N++ Y  ++        F  M  +++ L     IVP    F  +I  Y R  ++
Sbjct: 290 LKGPKPNIISYSTLLHGYAAEGCFANMNSLVN-LMVSKGIVPNHRFFNILINAYARCGMM 348

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNIL 158
           ++A+ +F++M +  +      F T+++     G+LD     F  +++  V P    Y  L
Sbjct: 349 DKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCL 408

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT-FGTLIYGLCLELRVDEALKLKEDIMRVY 217
           I GC     L  A ++  EM+ + + P  V  F ++I  L  E RV E   +  D+M   
Sbjct: 409 IQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIM-DLMVQT 467

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             +P+   F SL++G C VG +  A  + + M    IE +  IY +L+    K GR ++ 
Sbjct: 468 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 527

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + ++M  +G KP SV YN ++ G  +     AA  +  EM + G   +  +Y V+LGG
Sbjct: 528 LTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQTYGVVLGG 587

Query: 338 LCKD 341
           LC++
Sbjct: 588 LCRN 591



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 143/296 (48%), Gaps = 4/296 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++++I    R  M D+   I   ++ +  ++P  + F  VI    R   L+ AL  F+ M
Sbjct: 335 FNILINAYARCGMMDKAMLIFEDMQ-NKGMIPDTVTFATVISSLCRIGRLDDALHKFNHM 393

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSY-NILIHGCVVSRR 167
               V  +   +  L+      G+L + KEL  ++M K + P    Y + +I+      R
Sbjct: 394 VDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGR 453

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           + +   + D MV+   +P +VTF +L+ G CL   ++EA  L  D M    ++P+  ++ 
Sbjct: 454 VAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALL-DAMASIGIEPNCYIYG 512

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +L+ G C  G +  AL V  +M+   ++  + +Y+ ++  LF+A R      +  EM E 
Sbjct: 513 TLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIES 572

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G   +  TY  ++ G C+    + A  +L+++     K + I++N+++  + K G+
Sbjct: 573 GTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGR 628



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 101/211 (47%), Gaps = 8/211 (3%)

Query: 139 ELFQIMEKYVSPDAC-------SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           ELF+ M+++  P A        +YNILI       R E A  VF  +++  L P + ++ 
Sbjct: 102 ELFKRMDRWACPHAAADAPTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYN 161

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           TLI G   E  VD+A +L   ++   +V PD   + SLI GLC   E+  +  V E+MV 
Sbjct: 162 TLIDGFSKEGEVDKAYELFYKMIE-QSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVD 220

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
             I  +   Y+SLI     AG   E   + KEM   G  P  V  N+ I   C+    + 
Sbjct: 221 AGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKE 280

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           A  I D M  KG K N ISY+ +L G   +G
Sbjct: 281 AKDIFDSMVLKGPKPNIISYSTLLHGYAAEG 311



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 135/302 (44%), Gaps = 43/302 (14%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKH--DTRIVPKEIIF-CNVIGFYGRARLLERALQMF 106
           +  +I+ L R    D+    LH+  H  D  + P E ++ C + G      L+ +A ++ 
Sbjct: 370 FATVISSLCRIGRLDDA---LHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELV-KAKELI 425

Query: 107 DEMSSFNVQMT-VKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            EM + ++    VK+F++++N     G++   K++  +M +    P+  ++N L+ G  +
Sbjct: 426 SEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCL 485

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR--------V 216
              +E+A+ + D M    ++P    +GTL+ G C   R+D+AL +  D++         +
Sbjct: 486 VGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVL 545

Query: 217 YNVKPDG--------------------------QVFASLIKGLCAVGELSLALGVKEEMV 250
           YN+   G                          Q +  ++ GLC       A  + E++ 
Sbjct: 546 YNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLF 605

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
              ++ D   ++ +ISA+ K GR+ E   +   +   G  P   TYN +IS   KEE +E
Sbjct: 606 AMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYE 665

Query: 311 AA 312
            A
Sbjct: 666 EA 667



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 133/305 (43%), Gaps = 37/305 (12%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           H     P    +  +I  Y R    E AL +F  +    +   V  +NTL++     G++
Sbjct: 114 HAAADAPTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEV 173

Query: 135 DRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           D+  ELF +++E+ VSPD  +YN LI G   ++ +  + +V ++MV   ++P   T+ +L
Sbjct: 174 DKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSL 233

Query: 194 IYG-----------------------------------LCLELRVDEALKLKEDIMRVYN 218
           IYG                                   LC   R+ EA  +  D M +  
Sbjct: 234 IYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIF-DSMVLKG 292

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
            KP+   +++L+ G  A G  +    +   MV   I  +   ++ LI+A  + G  ++  
Sbjct: 293 PKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAM 352

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            I ++M+ +G  P++VT+  +IS  C+    + A    + M D G   +   Y  ++ G 
Sbjct: 353 LIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGC 412

Query: 339 CKDGK 343
           C  G+
Sbjct: 413 CNHGE 417


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 134/274 (48%), Gaps = 18/274 (6%)

Query: 87  CN-VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145
           CN VIG + R    + A+ ++ +M    + + +  FN L+     C KL      F  + 
Sbjct: 109 CNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLT 168

Query: 146 KY-VSPDACSYNILIHGCVVSRRLEDAWKVF---------------DEMVKRRLQPTLVT 189
           K    PD  ++N L+HG  +  R+ +A  +F               D+MV+  L P ++T
Sbjct: 169 KLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVIT 228

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           F TLI GLCLE RV EA  L    M    +  D   + +++ G+C +G+   AL +  +M
Sbjct: 229 FNTLINGLCLEGRVLEAAALVNK-MVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKM 287

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
               I+ D  IYS++I  L K G  ++   +  EM E+G  PN  TYN +I GFC    +
Sbjct: 288 EETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRW 347

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             A  +L +M ++    + +++N ++    K+GK
Sbjct: 348 SDAQRLLRDMIEREINPDVLTFNALISASVKEGK 381



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 159/366 (43%), Gaps = 58/366 (15%)

Query: 17  DPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD 76
           D K AL L           E   +KP   +++ Y  II +L +     + Q +  ++  +
Sbjct: 276 DTKSALNLLSK-------MEETHIKP---DVVIYSAIIDRLCKDGHHSDAQYLFSEML-E 324

Query: 77  TRIVPKEIIF-CNVIGF--YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133
             I P    + C + GF  +GR    +R L+   +M    +   V  FN L++  +  GK
Sbjct: 325 KGIAPNVFTYNCMIDGFCSFGRWSDAQRLLR---DMIEREINPDVLTFNALISASVKEGK 381

Query: 134 LDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           L   ++L  +++ + + PD  +YN +I+G     R +DA  +FD M      P +VTF T
Sbjct: 382 LFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNT 437

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR- 251
           +I   C   RVDE ++L  +I R   +  +   + +LI G C V  L+ A  + +EM+  
Sbjct: 438 IIDVYCRAKRVDEGMQLLREISR-RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISH 496

Query: 252 ----------------------------------DKIEMDAGIYSSLISALFKAGRKNEF 277
                                              KI++D   Y+ +I  + K  + +E 
Sbjct: 497 GVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEA 556

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +   +   G +P+  TYN +ISGFC +     A  +  +M D G + +  +YN ++ G
Sbjct: 557 WDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRG 616

Query: 338 LCKDGK 343
             K G+
Sbjct: 617 CLKAGE 622



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 141/293 (48%), Gaps = 9/293 (3%)

Query: 52  LIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111
           LI   +   K+F E +++  ++ H   I P  + + ++I  + +    + A  MFD M+S
Sbjct: 372 LISASVKEGKLF-EAEKLCDEMLHRC-IFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS 429

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVVSRRLED 170
            +V      FNT+++      ++D  M+ L +I  + +  +  +YN LIHG      L  
Sbjct: 430 PDVVT----FNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNA 485

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           A  +F EM+   + P  +T   L+YG C   +++EAL+L E ++++  +  D   +  +I
Sbjct: 486 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFE-VIQMSKIDLDTVAYNIII 544

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
            G+C   ++  A  +   +    +E D   Y+ +IS        ++   +  +MK+ G +
Sbjct: 545 HGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHE 604

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           P++ TYN LI G  K  + + +  ++ EM   G   +  +  ++   L  DG+
Sbjct: 605 PDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMV-ADLITDGR 656



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 135/288 (46%), Gaps = 11/288 (3%)

Query: 54  ITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFN 113
           +TKLG          +LH L  + RI     +F    G+      LE A+ +FD+M    
Sbjct: 167 LTKLGFQPDVVTFNTLLHGLCLEDRISEALALF----GYMVETGFLE-AVALFDQMVEIG 221

Query: 114 VQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAW 172
           +   V  FNTL+N     G++     L  +++ K +  D  +Y  +++G       + A 
Sbjct: 222 LTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSAL 281

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
            +  +M +  ++P +V +  +I  LC +    +A  L  +++    + P+   +  +I G
Sbjct: 282 NLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLE-KGIAPNVFTYNCMIDG 340

Query: 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
            C+ G  S A  +  +M+  +I  D   +++LISA  K G+  E   +  EM  R   P+
Sbjct: 341 FCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPD 400

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +VTYN++I GFCK   F+ A  + D M       + +++N I+   C+
Sbjct: 401 TVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCR 444


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 135/282 (47%), Gaps = 7/282 (2%)

Query: 62  MFDEMQQILHQLKHDTR--IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK 119
           MF+E+      L+  T+   VP  I++  +I    +   +  AL++ +EM        V+
Sbjct: 230 MFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQ 289

Query: 120 FFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
            FN +++      K+ D  K + +++ +   PD  +Y  L+HG     +L +A K+  ++
Sbjct: 290 TFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKI 349

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
                 P      TLI G  +  ++ EA     + M  +  +PD   +  L+ GLC  G 
Sbjct: 350 P----CPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGS 405

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           LS A  +  EM R   E +   Y+ L++ L KAG   E   +L EM  RG   NSV YN 
Sbjct: 406 LSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNC 465

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           LI   C++E    A  +L EM  KGCK +  +YN ++ GLCK
Sbjct: 466 LICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCK 507



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 145/306 (47%), Gaps = 8/306 (2%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           L+ F  + + Y  ++  L R    +E ++IL ++       P   I   +I  Y  +  L
Sbjct: 316 LRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP-----CPNNAILNTLINGYVMSGQL 370

Query: 100 ERALQMFDE-MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           + A    +E M +F  Q  +  +N L++     G L   ++L   M +    P+  +Y I
Sbjct: 371 KEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAI 430

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L++G   +  LE+A  V  EM  R L    V +  LI  LC + +V  AL L  + M   
Sbjct: 431 LVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSE-MCTK 489

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             KPD   + SLI GLC V  +  A  +   M+ D    +   Y++LI AL + G   + 
Sbjct: 490 GCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKA 549

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++ +M  RGC  + +TYN LI  FCK  + E    + ++M   G  A+ IS N+++ G
Sbjct: 550 LTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMING 609

Query: 338 LCKDGK 343
           LCK GK
Sbjct: 610 LCKVGK 615



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 154/328 (46%), Gaps = 38/328 (11%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y + I KLG    F  + ++L Q+K +  IV +E IF  ++  YG+A    +A+++  +M
Sbjct: 115 YYVFINKLGAIGKFKLIDKLLMQMKEEG-IVFRESIFMIIMKHYGKAGQPGQAIRLLLDM 173

Query: 110 SS-FNVQMTVKFFNTLLNPKLT--CGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSR 166
            + +  + T K ++ +L   +T  C ++      + ++ K VSP   ++ I++    +  
Sbjct: 174 RAVYLCEPTFKSYDLVLEILVTGNCPQV-ATNVFYDMLSKGVSPTVFTFGIVMKALCMFN 232

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
            ++ A  +  +M K    P  + + TLI+ L  + +V EALKL E+ M V    PD Q F
Sbjct: 233 EVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEE-MFVMGCMPDVQTF 291

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL----- 281
             +I GLC V ++  A  + + M+      D   Y  L+  L + G+ NE   IL     
Sbjct: 292 NDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPC 351

Query: 282 ---------------------------KEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
                                      + M   G +P+  TYN L+ G CKE     A  
Sbjct: 352 PNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARD 411

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDG 342
           +++EM  +GC+ N I+Y +++ GLCK G
Sbjct: 412 LVNEMSRRGCEPNVITYAILVNGLCKAG 439



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 125/263 (47%), Gaps = 2/263 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMKE 139
           P  I +  ++    +A LLE A  +  EMS+  + +    +N L+       K+   +  
Sbjct: 423 PNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNL 482

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L ++  K   PD  +YN LI+G     R+++A+++F  M+        VT+ TLI+ L  
Sbjct: 483 LSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLR 542

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
                +AL L  D M       D   +  LIK  C VG +   L + E+M+ D +  D  
Sbjct: 543 RGAFQKALTLVND-MLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTI 601

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             + +I+ L K G+ +     L++   RG  P+ VTYN++++G CK    + A  + D +
Sbjct: 602 SCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRL 661

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
             +G + +  +YN  +   CK+G
Sbjct: 662 QVEGVRPDAFTYNTFISWQCKEG 684



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 138/314 (43%), Gaps = 46/314 (14%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y +++  L +A + +E   +LH++      +   I  C +I    R   +  AL +
Sbjct: 424 NVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNC-LICALCRKEKVHVALNL 482

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC----SYNILIH- 160
             EM +   +  +  +N+L+       K+DR+ E F++    +   A     +YN LIH 
Sbjct: 483 LSEMCTKGCKPDLFTYNSLI---YGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHA 539

Query: 161 --------------------GCVVSR--------------RLEDAWKVFDEMVKRRLQPT 186
                               GC + +               +E   +++++M+   L   
Sbjct: 540 LLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGAD 599

Query: 187 LVTFGTLIYGLCLELRVDEALK-LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
            ++   +I GLC   +VD A + L++ I R +   PD   + S++ GLC VG +  AL +
Sbjct: 600 TISCNIMINGLCKVGKVDNAFEFLRDAINRGF--VPDIVTYNSVLNGLCKVGRIKEALNL 657

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
            + +  + +  DA  Y++ IS   K G  N+         E G  P+++T+N L+    K
Sbjct: 658 FDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACLFFYRGIENGFVPSNLTWNVLVYTLLK 717

Query: 306 EEDFEAAFTILDEM 319
           + + E  F +LDE+
Sbjct: 718 QSNQENNFFVLDEL 731



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 67/139 (48%)

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           +A++L  D+  VY  +P  + +  +++ L       +A  V  +M+   +      +  +
Sbjct: 165 QAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIV 224

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           + AL      +   ++L++M + GC PNS+ Y  LI    ++     A  +L+EM   GC
Sbjct: 225 MKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGC 284

Query: 325 KANPISYNVILGGLCKDGK 343
             +  ++N ++ GLCK  K
Sbjct: 285 MPDVQTFNDVIHGLCKVNK 303


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 139/264 (52%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +I+  +I    +   +E+A  +F EM  F +      +  L++     G   +  E+
Sbjct: 196 PNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEM 255

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           ++ M+++ V P+  +YN +++      R +DA+KVFDEM +R +   +VT+ TLI GLC 
Sbjct: 256 YEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCR 315

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E++ +EA ++  D M+   + P+   + +LI G C V +L  AL +  ++    +     
Sbjct: 316 EMKANEANEVM-DQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLV 374

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+ L+S   K G  +    ++KEM+ERG KP+ VTY  LI  F + ++ E A  +   M
Sbjct: 375 TYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSM 434

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
            + G   +  +Y+V++ G C  G+
Sbjct: 435 EELGLTPDVHTYSVLIHGFCIKGR 458



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 135/294 (45%), Gaps = 4/294 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y++II    +++  D      +++  D   VP    F N++ F   +    +    F+E 
Sbjct: 97  YEVIINAYVQSQSLDSSIYYFNEMV-DKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNE- 154

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
           S   V + V  F  ++      G++++  +L  ++ E   SP+   Y  LI GC     +
Sbjct: 155 SKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEI 214

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E A  +F EM K  L     T+  LI+GL       +  ++ E  M+ + V P+   +  
Sbjct: 215 EKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEK-MQEHGVFPNLHTYNC 273

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           ++  LC  G    A  V +EM    +  +   Y++LI  L +  + NE   ++ +MK  G
Sbjct: 274 VMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDG 333

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             PN +TYN LI GFC       A ++  ++  +G   + ++YN+++ G CK G
Sbjct: 334 INPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKG 387



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 117/226 (51%), Gaps = 3/226 (1%)

Query: 119 KFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           + +  ++N  +    LD     F ++++K   P +  +N L+   V S      W  F+E
Sbjct: 95  RLYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNE 154

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
             K ++   + +FG +I G C    ++++  L  + +R +   P+  ++ +LI G C  G
Sbjct: 155 -SKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVE-LREFGFSPNVVIYTTLIDGCCKKG 212

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           E+  A  +  EM +  +  +   Y+ LI  LFK G K +   + ++M+E G  PN  TYN
Sbjct: 213 EIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYN 272

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +++  CK+   + AF + DEM ++G   N ++YN ++GGLC++ K
Sbjct: 273 CVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMK 318



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 112/243 (46%), Gaps = 2/243 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           A ++FDEM    V   +  +NTL+       K +   E+  Q+    ++P+  +YN LI 
Sbjct: 287 AFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLID 346

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G    R+L  A  +  ++  R L P+LVT+  L+ G C +     A K+ ++ M    +K
Sbjct: 347 GFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKE-MEERGIK 405

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P    +  LI        +  A+ ++  M    +  D   YS LI      GR NE   +
Sbjct: 406 PSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRL 465

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            K M E+  +PN V YN ++ G+CKE     A  +  EM +K    N  SY  ++  LCK
Sbjct: 466 FKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCK 525

Query: 341 DGK 343
           + K
Sbjct: 526 ERK 528



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 125/277 (45%), Gaps = 1/277 (0%)

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
           F     +LH L        K  ++  +I  Y +++ L+ ++  F+EM           FN
Sbjct: 74  FFTSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFN 133

Query: 123 TLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR 182
            LL   +     ++    F   +  V  D  S+ I+I GC  +  +E ++ +  E+ +  
Sbjct: 134 NLLTFVVGSSSFNQWWCFFNESKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFG 193

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
             P +V + TLI G C +  +++A  L  + M  + +  +   +  LI GL   G     
Sbjct: 194 FSPNVVIYTTLIDGCCKKGEIEKAKDLFFE-MGKFGLVANEWTYTVLIHGLFKNGIKKQG 252

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
             + E+M    +  +   Y+ +++ L K GR  +   +  EM+ERG   N VTYN LI G
Sbjct: 253 FEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGG 312

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
            C+E     A  ++D+M   G   N I+YN ++ G C
Sbjct: 313 LCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFC 349



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 141/298 (47%), Gaps = 19/298 (6%)

Query: 46  NLLHYDLIITKL---GRAK----MFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRAR 97
           NL  Y+ ++ +L   GR K    +FDEM++         R V   I+  N +IG   R  
Sbjct: 267 NLHTYNCVMNQLCKDGRTKDAFKVFDEMRE---------RGVSCNIVTYNTLIGGLCREM 317

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYN 156
               A ++ D+M S  +   +  +NTL++      KL +   L + +  + +SP   +YN
Sbjct: 318 KANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYN 377

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           IL+ G         A KV  EM +R ++P+ VT+  LI        +++A++L+   M  
Sbjct: 378 ILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSS-MEE 436

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             + PD   ++ LI G C  G ++ A  + + MV  K E +  IY++++    K G    
Sbjct: 437 LGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYR 496

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
              + +EM+E+   PN  +Y  +I   CKE   + A  ++++M D G   +    N+I
Sbjct: 497 ALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGPSDSILNLI 554


>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 418

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 141/289 (48%), Gaps = 42/289 (14%)

Query: 81  PKEIIFCNVI--GFY--GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++  GF   G  RL   A  +FD ++ + ++ +V  FNTL+N  +  G L+ 
Sbjct: 133 PASLYFFNILMHGFVKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M+   V PD  +Y++LI+G     +++DA  +FDEM+ + L P  VTF TLI 
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMR--------VYN--------------------------VKP 221
           G C   RVD A+++ + ++          YN                          +KP
Sbjct: 250 GHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKP 309

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +LI G C  G+L  A   ++ M+++ I +D   Y++LIS L + GR  +   +L
Sbjct: 310 DKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKML 369

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
           +EM   G KP   TY  +I+ FCK+ D      +L EM   G K + ++
Sbjct: 370 REMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 126/228 (55%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++  +  G++   + +F  + K+ + P   S+N L++G +    L + +++ 
Sbjct: 135 SLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E ++D+A  L ++++    + P+G  F +LI G C 
Sbjct: 195 NAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDK-GLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 254 NGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGR 361



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 49/103 (47%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE +          ++ L+    K G      ++   + + G +P+ V++N L+
Sbjct: 119 LVWGFYEENLECGYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ K  D    F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 156/301 (51%), Gaps = 3/301 (0%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R +++ Y  +I  L  A   D+  +++ ++  ++ I P  +++ +++  Y ++   E   
Sbjct: 147 RADVVTYGTLIRGLCDAAEVDKAVELMGEMC-ESGIEPNVVVYSSLLQGYCKSGRWEDVG 205

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGC 162
           ++F EMS   ++  V  +  L++     GK  +   +  +M  + + P+  +YN+LI+  
Sbjct: 206 KVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCM 265

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN-VKP 221
                +++A  V  +M ++ + P +VT+ TLI GL   L +DEA+ L E+++R  N VKP
Sbjct: 266 CKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKP 325

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   F S+I+GLC +G +  A  V+  M      ++   Y+ LI  L +  +  +   ++
Sbjct: 326 NVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELM 385

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM   G +P+S TY+ LI GFCK    + A  +L  M D+G +     Y  +L  +C+ 
Sbjct: 386 DEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQ 445

Query: 342 G 342
           G
Sbjct: 446 G 446



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 121/244 (49%), Gaps = 8/244 (3%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM----EKYVSPDACS 154
           L  A  + D + S    ++   +NT+L      G  DR   L + M         P+A S
Sbjct: 61  LGEATSLLDALPSVRDAVS---YNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVS 117

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           Y +L+      R  + A  +   M    ++  +VT+GTLI GLC    VD+A++L  ++ 
Sbjct: 118 YTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC 177

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
               ++P+  V++SL++G C  G       V  EM    IE D  +Y+ LI +L K G+ 
Sbjct: 178 E-SGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKA 236

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            +   ++  M  RG +PN VTYN LI+  CKE   + A  +L +M +KG   + ++YN +
Sbjct: 237 KKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTL 296

Query: 335 LGGL 338
           + GL
Sbjct: 297 IKGL 300



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 97/196 (49%), Gaps = 4/196 (2%)

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMV---KRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           DA SYN ++         + A  +   M        +P  V++  L+  LC +   D+A+
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAV 135

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            L    MR   V+ D   + +LI+GLC   E+  A+ +  EM    IE +  +YSSL+  
Sbjct: 136 GLLRS-MRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQG 194

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
             K+GR  +   +  EM E+G +P+ V Y  LI   CK    + A  ++D M  +G + N
Sbjct: 195 YCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPN 254

Query: 328 PISYNVILGGLCKDGK 343
            ++YNV++  +CK+G 
Sbjct: 255 VVTYNVLINCMCKEGS 270



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 141/304 (46%), Gaps = 12/304 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+++I  + +     E   +L ++  +  + P  + +  +I        ++ A+ +
Sbjct: 254 NVVTYNVLINCMCKEGSVKEAIGVLKKMS-EKGVAPDVVTYNTLIKGLSDVLEMDEAMWL 312

Query: 106 FDEMSSFN--VQMTVKFFNTLLNPKLTCGKLDRMKELFQIM----EKYVSPDACSYNILI 159
            +EM      V+  V  FN+++      G   RM++ FQ+     E     +  +YN+LI
Sbjct: 313 LEEMVRGKNIVKPNVVTFNSVIQGLCDIG---RMRQAFQVRAMMEETGCMVNLVTYNLLI 369

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G +   ++  A ++ DEM    L+P   T+  LI G C   +VD A  L    MR   +
Sbjct: 370 GGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLS-TMRDRGI 428

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +P+   +  L+  +C  G +  A  +  EM  +   +D   YS++I    KAG       
Sbjct: 429 EPELFHYIPLLVAMCEQGMMERARNLFNEM-DNNFPLDVVAYSTMIHGACKAGDLKTAKE 487

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +LK + + G  P++VTY+ +I+ F K  D EAA  +L +M   G   +   ++ ++ G  
Sbjct: 488 LLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYS 547

Query: 340 KDGK 343
             G+
Sbjct: 548 TKGE 551



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 125/276 (45%), Gaps = 4/276 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV-PKEIIFCNVIGFYGRARLLERALQ 104
           +++ Y+ +I  L      DE   +L ++     IV P  + F +VI        + +A Q
Sbjct: 289 DVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQ 348

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV 163
           +   M      + +  +N L+   L   K+ +  EL   M    + PD+ +Y+ILI G  
Sbjct: 349 VRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFC 408

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              +++ A  +   M  R ++P L  +  L+  +C +  ++ A  L  ++    N   D 
Sbjct: 409 KMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDN--NFPLDV 466

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             ++++I G C  G+L  A  + + +V + +  DA  YS +I+   K+G       +LK+
Sbjct: 467 VAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQ 526

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           M   G  P+   +++LI G+  + +      ++ EM
Sbjct: 527 MTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREM 562



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 111/241 (46%), Gaps = 5/241 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ Y+L+I  L R     +  +++ ++     + P    +  +I  + +   ++RA  +
Sbjct: 361 NLVTYNLLIGGLLRVHKVRKAMELMDEMT-SLGLEPDSFTYSILIKGFCKMWQVDRAEDL 419

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
              M    ++  +  +  LL      G ++R + LF  M+     D  +Y+ +IHG   +
Sbjct: 420 LSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKA 479

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             L+ A ++   +V   L P  VT+  +I        ++ A  + +  M      PD  V
Sbjct: 480 GDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQ-MTASGFLPDVAV 538

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F SLI+G    GE++  L +  EM+   I +D+ I S+L ++L  +   NE  A+L+ + 
Sbjct: 539 FDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTLSTSLVAS---NEGKALLQSLP 595

Query: 286 E 286
           +
Sbjct: 596 D 596



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 105/240 (43%), Gaps = 3/240 (1%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKY 147
           +IG   R   + +A+++ DEM+S  ++     ++ L+       ++DR ++L   M ++ 
Sbjct: 368 LIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRG 427

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P+   Y  L+        +E A  +F+EM        +V + T+I+G C    +  A 
Sbjct: 428 IEPELFHYIPLLVAMCEQGMMERARNLFNEM-DNNFPLDVVAYSTMIHGACKAGDLKTAK 486

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           +L + I+    + PD   ++ +I      G++  A GV ++M       D  ++ SLI  
Sbjct: 487 ELLKSIVD-EGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQG 545

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
               G  N+   +++EM  +    +S   + L +      + +A    L +   +  K N
Sbjct: 546 YSTKGEINKVLELIREMITKNIALDSKIISTLSTSLVASNEGKALLQSLPDFSAEISKGN 605


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 126/243 (51%), Gaps = 1/243 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           AL  F +++   +   V  FNTLL+      ++     LF Q+ E    P+  ++  L++
Sbjct: 133 ALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMN 192

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     R+ +A  + D M++  LQPT +T+GT++ G+C       AL L   +  + ++ 
Sbjct: 193 GLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHII 252

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+  +++++I  LC  G  S A  +  EM    I  D   Y+S+I     +GR ++   +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L+EM ER   P+ VTYNALI+ F KE  F  A  + DEM  +G   N I+Y+ ++ G CK
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 341 DGK 343
             +
Sbjct: 373 QNR 375



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 156/310 (50%), Gaps = 14/310 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L  Y+ +I     +  + + +Q+L ++  + +I P  + +  +I  + +      A ++
Sbjct: 289 DLFTYNSMIVGFCSSGRWSDAEQLLQEML-ERKISPDVVTYNALINAFVKEGKFFEAEEL 347

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           +DEM    +      ++++++      +LD  + +F +M  K  SP+  ++N LI G   
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCG 407

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           ++R++D  ++  EM +  L     T+ TLI+G  L   ++ AL L ++++    + PD  
Sbjct: 408 AKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMIS-SGLCPDIV 466

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG-----------IYSSLISALFKAGR 273
              +L+ GLC  G+L  AL + + M + K ++DA             Y+ LIS L   G+
Sbjct: 467 TCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGK 526

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   + +EM  RG  P+++TY+++I G CK+   + A  + D MG K    N +++  
Sbjct: 527 FLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTT 586

Query: 334 ILGGLCKDGK 343
           ++ G CK G+
Sbjct: 587 LINGYCKAGR 596



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 149/309 (48%), Gaps = 12/309 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I    +   F E +++  ++     I+P  I + ++I  + +   L+ A  M
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEML-PRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVV 164
           F  M++      +  FNTL++      ++D  M+ L ++ E  +  D  +YN LIHG  +
Sbjct: 383 FYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYL 442

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-------KEDIMRVY 217
              L  A  +  EM+   L P +VT  TL+ GLC   ++ +AL++       K+D+   +
Sbjct: 443 VGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASH 502

Query: 218 ---NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
               V+PD Q +  LI GL   G+   A  + EEM    I  D   YSS+I  L K  R 
Sbjct: 503 PFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRL 562

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +E   +   M  +   PN VT+  LI+G+CK    +    +  EMG +G  AN I+Y  +
Sbjct: 563 DEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITL 622

Query: 335 LGGLCKDGK 343
           + G  K G 
Sbjct: 623 ICGFRKVGN 631



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 144/287 (50%), Gaps = 16/287 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           NL+ ++ +I     AK  D+  ++LH++  +T +V     +  +I GFY    L   AL 
Sbjct: 394 NLITFNTLIDGYCGAKRIDDGMELLHEMT-ETGLVADTTTYNTLIHGFYLVGDL-NAALD 451

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY------------VSPDA 152
           +  EM S  +   +   +TLL+     GKL    E+F++M+K             V PD 
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YNILI G +   +  +A ++++EM  R + P  +T+ ++I GLC + R+DEA ++  D
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF-D 570

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M   +  P+   F +LI G C  G +   L +  EM R  I  +A  Y +LI    K G
Sbjct: 571 SMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVG 630

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             N    I +EM   G  P+++T   +++G   +E+ + A  +L+++
Sbjct: 631 NINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 135/290 (46%), Gaps = 39/290 (13%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVS 149
           GF+   + LE A+ +F +M       +V  F  L+   +   + D +  L+Q ME K + 
Sbjct: 53  GFH-EIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIR 111

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
            D  S+ ILI       +L  A   F ++ K  L P +VTF TL++GLC+E RV EAL L
Sbjct: 112 CDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNL 171

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE-------------- 255
              +      +P+   F +L+ GLC  G +  A+ + + M+ D ++              
Sbjct: 172 FHQMFET-TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMC 230

Query: 256 ----------------------MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
                                  +  IYS++I +L K GR ++   +  EM+E+G  P+ 
Sbjct: 231 KIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDL 290

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            TYN++I GFC    +  A  +L EM ++    + ++YN ++    K+GK
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGK 340



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 127/276 (46%), Gaps = 4/276 (1%)

Query: 65  EMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124
           E   + HQ+  +T   P  + F  ++    R   +  A+ + D M    +Q T   + T+
Sbjct: 167 EALNLFHQM-FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTI 225

Query: 125 LNPKLTCGKLDRMKELFQIMEK--YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR 182
           ++     G      +L + ME+  ++ P+   Y+ +I       R  DA  +F EM ++ 
Sbjct: 226 VDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKG 285

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
           + P L T+ ++I G C   R  +A +L ++++    + PD   + +LI      G+   A
Sbjct: 286 IFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE-RKISPDVVTYNALINAFVKEGKFFEA 344

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
             + +EM+   I  +   YSS+I    K  R +    +   M  +GC PN +T+N LI G
Sbjct: 345 EELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDG 404

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           +C  +  +    +L EM + G  A+  +YN ++ G 
Sbjct: 405 YCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 139/264 (52%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +I+  +I    +   +E+A  +F EM    +    + +  L+N     G   +  E+
Sbjct: 196 PNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEM 255

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           ++ M E  V P+  +YN +++      R +DA++VFDEM +R +   +VT+ TLI GLC 
Sbjct: 256 YEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCR 315

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E++++EA K+  D M+   + P+   + +LI G C VG+L  AL +  ++    +     
Sbjct: 316 EMKLNEANKVV-DQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLV 374

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+ L+S   + G  +    ++KEM+ERG KP+ VTY  LI  F + ++ E A  +   M
Sbjct: 375 TYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSM 434

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
            + G   +  +Y+V++ G C  G+
Sbjct: 435 EELGLVPDVHTYSVLIHGFCIKGQ 458



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 129/281 (45%), Gaps = 1/281 (0%)

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
           F     +LH L        K  ++  +I  Y +++ L  ++  F+EM           FN
Sbjct: 74  FFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFN 133

Query: 123 TLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR 182
            LL   +     ++    F   +  V  D  S+ ILI GC  +  +E ++ +  E+ +  
Sbjct: 134 YLLTFVVGSSSFNQWWSFFNENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFG 193

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
             P +V + TLI G C +  +++A  L  ++ ++  +  + + +  LI GL   G     
Sbjct: 194 FSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKL-GLVANERTYTVLINGLFKNGVKKQG 252

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
             + E+M  D +  +   Y+ +++ L K GR  +   +  EM+ERG   N VTYN LI G
Sbjct: 253 FEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGG 312

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            C+E     A  ++D+M   G   N I+YN ++ G C  GK
Sbjct: 313 LCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGK 353



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 114/243 (46%), Gaps = 2/243 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           A Q+FDEM    V   +  +NTL+       KL+   ++  Q+    ++P+  +YN LI 
Sbjct: 287 AFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLID 346

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     +L  A  +  ++  R L P+LVT+  L+ G C +     A K+ ++ M    +K
Sbjct: 347 GFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKE-MEERGIK 405

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P    +  LI        +  A+ ++  M    +  D   YS LI      G+ NE   +
Sbjct: 406 PSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRL 465

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            K M E+ C+PN V YN +I G+CKE     A  +L EM +K    N  SY  ++  LCK
Sbjct: 466 FKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCK 525

Query: 341 DGK 343
           + K
Sbjct: 526 ERK 528



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 131/238 (55%), Gaps = 2/238 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           +E++  +  E++ F     V  + TL++     G++++ K+LF  M K  +  +  +Y +
Sbjct: 179 IEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTV 238

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G   +   +  ++++++M +  + P L T+  ++  LC + R  +A ++ ++ MR  
Sbjct: 239 LINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDE-MRER 297

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            V  +   + +LI GLC   +L+ A  V ++M  D I  +   Y++LI      G+  + 
Sbjct: 298 GVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKA 357

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
            ++ +++K RG  P+ VTYN L+SGFC++ D   A  ++ EM ++G K + ++Y +++
Sbjct: 358 LSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILI 415



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 140/287 (48%), Gaps = 19/287 (6%)

Query: 46  NLLHYDLIITKL---GRAK----MFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRAR 97
           NL  Y+ ++ +L   GR K    +FDEM++         R V   I+  N +IG   R  
Sbjct: 267 NLYTYNCVMNQLCKDGRTKDAFQVFDEMRE---------RGVSCNIVTYNTLIGGLCREM 317

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYN 156
            L  A ++ D+M S  +   +  +NTL++     GKL +   L + +  + +SP   +YN
Sbjct: 318 KLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYN 377

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           IL+ G         A K+  EM +R ++P+ VT+  LI        +++A++L+   M  
Sbjct: 378 ILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLS-MEE 436

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             + PD   ++ LI G C  G+++ A  + + MV    E +  IY+++I    K G    
Sbjct: 437 LGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYR 496

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
              +LKEM+E+   PN  +Y  +I   CKE   + A  ++++M D G
Sbjct: 497 ALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSG 543



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 130/258 (50%), Gaps = 6/258 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           N++ Y+ +I  L R    +E  +++ Q+K D  I P  I +  +I GF G  +L  +AL 
Sbjct: 302 NIVTYNTLIGGLCREMKLNEANKVVDQMKSDG-INPNLITYNTLIDGFCGVGKL-GKALS 359

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
           +  ++ S  +  ++  +N L++     G      ++ + ME + + P   +Y ILI    
Sbjct: 360 LCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFA 419

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            S  +E A ++   M +  L P + T+  LI+G C++ +++EA +L + ++   N +P+ 
Sbjct: 420 RSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVE-KNCEPNE 478

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
            ++ ++I G C  G    AL + +EM   ++  +   Y  +I  L K  +  E   ++++
Sbjct: 479 VIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEK 538

Query: 284 MKERGCKPNSVTYNALIS 301
           M + G  P S +  +LIS
Sbjct: 539 MIDSGIDP-STSILSLIS 555


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 135/282 (47%), Gaps = 7/282 (2%)

Query: 62  MFDEMQQILHQLKHDTR--IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK 119
           MF+E+      L+  T+   VP  I++  +I    +   +  AL++ +EM        V+
Sbjct: 230 MFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQ 289

Query: 120 FFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
            FN +++      K+ D  K + +++ +   PD  +Y  L+HG     +L +A K+  ++
Sbjct: 290 TFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKI 349

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
                 P      TLI G  +  ++ EA     + M  +  +PD   +  L+ GLC  G 
Sbjct: 350 P----CPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGS 405

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           LS A  +  EM R   E +   Y+ L++ L KAG   E   +L EM  RG   NSV YN 
Sbjct: 406 LSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNC 465

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           LI   C++E    A  +L EM  KGCK +  +YN ++ GLCK
Sbjct: 466 LICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCK 507



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 145/306 (47%), Gaps = 8/306 (2%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           L+ F  + + Y  ++  L R    +E ++IL ++       P   I   +I  Y  +  L
Sbjct: 316 LRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP-----CPNNAILNTLINGYVMSGQL 370

Query: 100 ERALQMFDE-MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           + A    +E M +F  Q  +  +N L++     G L   ++L   M +    P+  +Y I
Sbjct: 371 KEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAI 430

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L++G   +  LE+A  V  EM  R L    V +  LI  LC + +V  AL L  + M   
Sbjct: 431 LVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSE-MCTK 489

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             KPD   + SLI GLC V  +  A  +   M+ D    +   Y++LI AL + G   + 
Sbjct: 490 GCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKA 549

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++ +M  RGC  + +TYN LI  FCK  + E    + ++M   G  A+ IS N+++ G
Sbjct: 550 LTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMING 609

Query: 338 LCKDGK 343
           LCK GK
Sbjct: 610 LCKVGK 615



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 154/328 (46%), Gaps = 38/328 (11%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y + I KLG    F  + ++L Q+K +  IV +E IF  ++  YG+A    +A+++  +M
Sbjct: 115 YYVFINKLGAIGKFKLIDKLLMQMKEEG-IVFRESIFMIIMKHYGKAGQPGQAIRLLLDM 173

Query: 110 SS-FNVQMTVKFFNTLLNPKLT--CGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSR 166
            + +  + T K ++ +L   +T  C ++      + ++ K VSP   ++ I++    +  
Sbjct: 174 RAVYLCEPTFKSYDLVLEILVTGNCPQV-ATNVFYDMLSKGVSPTVFTFGIVMKALCMFN 232

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
            ++ A  +  +M K    P  + + TLI+ L  + +V EALKL E+ M V    PD Q F
Sbjct: 233 EVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEE-MFVMGCMPDVQTF 291

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL----- 281
             +I GLC V ++  A  + + M+      D   Y  L+  L + G+ NE   IL     
Sbjct: 292 NDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPC 351

Query: 282 ---------------------------KEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
                                      + M   G +P+  TYN L+ G CKE     A  
Sbjct: 352 PNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARD 411

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDG 342
           +++EM  +GC+ N I+Y +++ GLCK G
Sbjct: 412 LVNEMSRRGCEPNVITYAILVNGLCKAG 439



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 125/263 (47%), Gaps = 2/263 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMKE 139
           P  I +  ++    +A LLE A  +  EMS+  + +    +N L+       K+   +  
Sbjct: 423 PNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNL 482

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L ++  K   PD  +YN LI+G     R+++A+++F  M+        VT+ TLI+ L  
Sbjct: 483 LSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLR 542

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
                +AL L  D M       D   +  LIK  C VG +   L + E+M+ D +  D  
Sbjct: 543 RGAFQKALTLVND-MLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTI 601

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             + +I+ L K G+ +     L++   RG  P+ VTYN++++G CK    + A  + D +
Sbjct: 602 SCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRL 661

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
             +G + +  +YN  +   CK+G
Sbjct: 662 QVEGVRPDAFTYNTFISWQCKEG 684



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 139/314 (44%), Gaps = 46/314 (14%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y +++  L +A + +E   +LH++      +   I  C +I    R   +  AL +
Sbjct: 424 NVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNC-LICALCRKEKVHVALNL 482

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC----SYNILIH- 160
             EM +   +  +  +N+L+       K+DR+ E F++    +   A     +YN LIH 
Sbjct: 483 LSEMCTKGCKPDLFTYNSLI---YGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHA 539

Query: 161 --------------------GCVVSR--------------RLEDAWKVFDEMVKRRLQPT 186
                               GC + +               +E   +++++M+   L   
Sbjct: 540 LLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGAD 599

Query: 187 LVTFGTLIYGLCLELRVDEALK-LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
            ++   +I GLC   +VD A + L++ I R +   PD   + S++ GLC VG +  AL +
Sbjct: 600 TISCNIMINGLCKVGKVDNAFEFLRDAINRGF--VPDIVTYNSVLNGLCKVGRIKEALNL 657

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
            + +  + +  DA  Y++ IS   K G  N+  +      E G  P+++T+N L+    K
Sbjct: 658 FDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACSFFYRGIENGFVPSNLTWNVLVYTLLK 717

Query: 306 EEDFEAAFTILDEM 319
           + + E  F +LDE+
Sbjct: 718 QSNQENNFFVLDEL 731



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 67/139 (48%)

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           +A++L  D+  VY  +P  + +  +++ L       +A  V  +M+   +      +  +
Sbjct: 165 QAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIV 224

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           + AL      +   ++L++M + GC PNS+ Y  LI    ++     A  +L+EM   GC
Sbjct: 225 MKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGC 284

Query: 325 KANPISYNVILGGLCKDGK 343
             +  ++N ++ GLCK  K
Sbjct: 285 MPDVQTFNDVIHGLCKVNK 303


>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 123/245 (50%), Gaps = 2/245 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           ++RAL   D++ +   Q+    + TL+N     G+   +  L + +E + V PD   Y  
Sbjct: 147 IKRALHFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTT 206

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +IH    ++ L DA  ++ EM+ + + P + T+ TLI+G C+   + EA  L  + M++ 
Sbjct: 207 IIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNE-MKLK 265

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N+ PD   F  LI  L   G++  A+ + EEM    +  +   Y+SLI  L K       
Sbjct: 266 NINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERA 325

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            A+ K+MKE+G +PN  +Y  L+   CK    E A      +  KG   N  +YNV++ G
Sbjct: 326 IALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMING 385

Query: 338 LCKDG 342
           LCK G
Sbjct: 386 LCKAG 390



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 136/295 (46%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++ I++ L + K +  +  +  Q + +  I P       +I  +     +  A  +F  +
Sbjct: 64  FNNILSSLVKNKRYPTVISLFKQFEPNG-ITPDLCTLSILINCFCHLTHITFAFSVFANI 122

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
                       NTL+     CG++ R      +++ +    D  SY  LI+G   +   
Sbjct: 123 LKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCKAGET 182

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           +   ++  ++    ++P LV + T+I+ LC    + +A  L  + M V  + P+   + +
Sbjct: 183 KAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSE-MIVKGISPNVFTYTT 241

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G C +G L  A  +  EM    I  D   ++ LI AL K G+ +E  ++ +EMK + 
Sbjct: 242 LIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKN 301

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             PN VTY +LI G CK    E A  +  +M ++G + N  SY ++L  LCK G+
Sbjct: 302 MFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKGGR 356



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 119/244 (48%), Gaps = 8/244 (3%)

Query: 107 DEMSSFNVQMTVK------FFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
           D ++SFN  + ++       FN +L+  +   +   +  LF+  E   ++PD C+ +ILI
Sbjct: 44  DAVASFNRMLLMRPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILI 103

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +       +  A+ VF  ++KR   P  +T  TLI GLC    +  AL   + ++     
Sbjct: 104 NCFCHLTHITFAFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVV-AQGF 162

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           + D   + +LI GLC  GE      +  ++    ++ D  +Y+++I  L K     +   
Sbjct: 163 QLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACD 222

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +  EM  +G  PN  TY  LI GFC   + + AF++L+EM  K    +  ++N+++  L 
Sbjct: 223 LYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALA 282

Query: 340 KDGK 343
           K+GK
Sbjct: 283 KEGK 286



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 141/282 (50%), Gaps = 3/282 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ + + Y  +I  L +A     + ++L +L+  + + P  +++  +I    + +LL  A
Sbjct: 162 FQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHS-VKPDLVMYTTIIHCLCKNKLLGDA 220

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHG 161
             ++ EM    +   V  + TL++     G L     L   M+ K ++PD  ++NILI  
Sbjct: 221 CDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDA 280

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                ++++A  +F+EM  + + P +VT+ +LI GLC    ++ A+ L +  M+   ++P
Sbjct: 281 LAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKK-MKEQGIQP 339

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   +  L+  LC  G L  A    + ++     ++   Y+ +I+ L KAG   +   + 
Sbjct: 340 NVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLK 399

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
            +M+ +GC PN++T+  +I    ++++ + A   L EM  +G
Sbjct: 400 SKMEGKGCMPNAITFKTIICALLEKDENDKAEKFLREMIARG 441



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LK    ++  ++++I  L +    DE   +  ++KH   + P  + + ++I    +   L
Sbjct: 264 LKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHK-NMFPNIVTYTSLIDGLCKNHHL 322

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNIL 158
           ERA+ +  +M    +Q  V  +  LL+     G+L+  K+ FQ ++ K    +  +YN++
Sbjct: 323 ERAIALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVM 382

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDIMR 215
           I+G   +    D   +  +M  +   P  +TF T+I  L  +   D+A K L+E I R
Sbjct: 383 INGLCKAGLFGDVMDLKSKMEGKGCMPNAITFKTIICALLEKDENDKAEKFLREMIAR 440


>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 418

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 136/286 (47%), Gaps = 36/286 (12%)

Query: 81  PKEIIFCNVIGF-YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F N++   + +   +  A  +FD ++ + ++ +V  FNTL+N  +  G LD    
Sbjct: 133 PASLYFFNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFR 192

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L  +M+   V PD  +Y++LI+G     +++DA  +FDEM+   L P  VTF TLI G C
Sbjct: 193 LKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 199 LELRVDEALKLKE----------------------------------DIMRVYNVKPDGQ 224
              RVD A+++                                    D M +  +KPD  
Sbjct: 253 KNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G C  G+L  A   ++ M+++ I +D   Y++LIS L + GR  +   +L+EM
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAEKMLREM 372

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
              G KP   TY  +I+ FCK+ D      +L EM   G   N ++
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYLPNVVT 418



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 123/228 (53%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
             M    +QP + T+  LI GLC E ++D+A  L ++++    + P+G  F +LI G C 
Sbjct: 195 SVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLD-NGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ +  +M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 254 NGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++  LC++G+
Sbjct: 314 YTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGR 361



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 54/115 (46%)

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I+ L  +    L  G  EE +          ++ L+    K G      ++   + + G
Sbjct: 107 VIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHNFCKGGEIXLAQSVFDSITKWG 166

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +P+ V++N L++G+ K  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 167 LRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESK 221


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 153/311 (49%), Gaps = 6/311 (1%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           + E   +KP   N++ Y++II    + ++  + + +  ++  D  I P  + + ++I  +
Sbjct: 214 EMEGQVVKP---NIVIYNMIIDSFCKDELTCKARDLYLKIV-DMGIDPDILTYTSLIRGF 269

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDA 152
            R        Q+  EM + N+   V  FN L++     GK+   + +F +M K    PD 
Sbjct: 270 CRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDI 329

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            ++N LI G  +   + +A K+FD + +R + P + ++  LI G C   R+DEA+ L  +
Sbjct: 330 VTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNE 389

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            MR  N+  D  +++SLI GLC  G +S A  +   +  D    +   Y+ LI A  K  
Sbjct: 390 -MRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQ 448

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
             +    + K M  +G  P  +TYN LI+G+CK +    A  +L  M  K    + I+YN
Sbjct: 449 DIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYN 508

Query: 333 VILGGLCKDGK 343
            +  GLCK G+
Sbjct: 509 SLFDGLCKSGR 519



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 146/292 (50%), Gaps = 8/292 (2%)

Query: 54  ITKLGRA-KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           + K+GR+   F  +Q++  Q+     + P  +I+  +I  + +  L  +A  ++ ++   
Sbjct: 199 LCKIGRSIDAFQLLQEMEGQV-----VKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDM 253

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDA 171
            +   +  + +L+      G+   +K+L  +++ K ++P+  ++N+LI       ++ +A
Sbjct: 254 GIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEA 313

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIK 231
             +F+ MVKR  QP +VTF TLI G CL   V EA KL + +     + PD   +  LI 
Sbjct: 314 QGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFE-RGILPDVWSYTILII 372

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           G C    +  A+ +  EM    + +D  +YSSLI  L K+GR +    +   +   G  P
Sbjct: 373 GYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPP 432

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           N +TYN LI  FCK +D +    +   M  KG     ++YN+++ G CK  +
Sbjct: 433 NVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKR 484



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 128/298 (42%), Gaps = 36/298 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++L Y  +I    R   + E++Q++ ++  +  I P    F  +I  + R   +  A  M
Sbjct: 258 DILTYTSLIRGFCRTGQWGEVKQLMCEMV-NKNINPNVYTFNVLIDAFCRKGKMIEAQGM 316

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           F+ M     Q  +  FNTL++     G +   ++LF  + E+ + PD  SY ILI G   
Sbjct: 317 FNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCK 376

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--------MRV 216
            +R+++A  +F+EM  + +   +V + +LI GLC   R+  A +L   I        +  
Sbjct: 377 CKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVIT 436

Query: 217 YNV--------------------------KPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
           YN+                           P    +  LI G C    +  A+ +   M 
Sbjct: 437 YNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQ 496

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
              +  D+  Y+SL   L K+GR ++   + K M   G   +  TYN L+  FCK +D
Sbjct: 497 SKNLAPDSITYNSLFDGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFCKAQD 554



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 119/246 (48%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           +++A+   D +++  + +    + TL+N     G+     +L Q ME + V P+   YN+
Sbjct: 170 VQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNM 229

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I           A  ++ ++V   + P ++T+ +LI G C   +  E  +L  +++   
Sbjct: 230 IIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVN-K 288

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N+ P+   F  LI   C  G++  A G+   MV+   + D   +++LIS     G   E 
Sbjct: 289 NINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEA 348

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +   + ERG  P+  +Y  LI G+CK +  + A ++ +EM  K    + + Y+ ++ G
Sbjct: 349 RKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDG 408

Query: 338 LCKDGK 343
           LCK G+
Sbjct: 409 LCKSGR 414



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 108/236 (45%), Gaps = 21/236 (8%)

Query: 109 MSSFN-VQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRR 167
           +SSFN +   V  FN L+N          M+ L         P    +N +I   V  + 
Sbjct: 59  LSSFNGIDDAVTLFNHLIN----------MQPL---------PSVIQFNTIIGSVVKMKH 99

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
              A  +  +MV + + P++ T    I   C    +  A  +   +++    +P+     
Sbjct: 100 CPVAISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLK-RGYQPNNITLT 158

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +++KGLC  GE+  A+   + +    + +D   Y +LI+ L K GR  +   +L+EM+ +
Sbjct: 159 TVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQ 218

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             KPN V YN +I  FCK+E    A  +  ++ D G   + ++Y  ++ G C+ G+
Sbjct: 219 VVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQ 274


>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 164/352 (46%), Gaps = 36/352 (10%)

Query: 21  ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
           +L L K    + ++  AH  KPF       D ++     +KM DE   +   ++ D   V
Sbjct: 66  SLLLTKTAFSSLSELHAHVSKPF-----FSDNLLWLCSVSKMLDEATDLYSTMRKDG-FV 119

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P       ++     +R  E+ L +F ++     +     +   +   +    LD+  EL
Sbjct: 120 PSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRPDAVAYGKAVQAAVMLKDLDKGFEL 179

Query: 141 FQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
            + M K  + P   +YN+++ G    RR++DA K+FDEM++R + P  VT+ TLI G C 
Sbjct: 180 MKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCK 239

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM---------- 249
              ++EAL  KE  M+  NV+ +   + SL+ GLC  G +  A  V  EM          
Sbjct: 240 VGGIEEALGFKER-MKEQNVECNLVTYNSLLNGLCGSGRVDDAREVLLEMEGSGFLPGGF 298

Query: 250 ---VRD---------------KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
              V D               +I +D   Y  L++ L + GR  +   +L ++ E G  P
Sbjct: 299 LSFVFDDHSNGAGDDGLFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTP 358

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + ++YN L++ +C+E D + A    ++M ++G + N I++N ++   C+ G+
Sbjct: 359 SKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCETGE 410



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 163/321 (50%), Gaps = 5/321 (1%)

Query: 24  LFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE 83
           +F + +    D      K  R +   Y +++  L R    ++ +++L +L  +  + P +
Sbjct: 302 VFDDHSNGAGDDGLFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENG-VTPSK 360

Query: 84  IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQI 143
           I +  ++  Y +   +++A+   ++M    ++     FNT+++     G++D  +   + 
Sbjct: 361 ISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRR 420

Query: 144 M-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR 202
           M EK VSP   +YN LI+G          ++  DEM K  ++P ++++G+LI  LC + +
Sbjct: 421 MVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRK 480

Query: 203 -VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
            +D  + L + I R   V P+ +++  LI+  C++ +L  A    +EM++  I+     Y
Sbjct: 481 LIDAEIVLADMIGR--GVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTY 538

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           ++LI+ L + GR  +   +  +M  +GC P+ +TYN+LISG+ K  + +    + D+M  
Sbjct: 539 NTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAKSVNTQKCLELYDKMKI 598

Query: 322 KGCKANPISYNVILGGLCKDG 342
            G K    +++ ++    K+G
Sbjct: 599 LGIKPTVGTFHPLIYACRKEG 619



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 129/245 (52%), Gaps = 3/245 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           L+ A + FDEM    +  T+  +NTL+N     G++ + ++LF Q+  K  +PD  +YN 
Sbjct: 516 LKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNS 575

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G   S   +   +++D+M    ++PT+ TF  LIY  C +  V    K+ ++++++ 
Sbjct: 576 LISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYA-CRKEGVVTMDKMFQEMLQM- 633

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           ++ PD  V+  +I      G +  A+ + ++MV   ++ D   Y+SLI A  +  R +E 
Sbjct: 634 DLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTYNSLILAYLRDRRVSEI 693

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++ +MK +G  P   TYN LI G C  +DF  A+    EM ++G   N      ++ G
Sbjct: 694 KHLVDDMKAKGLVPKVDTYNILIKGLCDLKDFNGAYFWYREMVERGLLLNVSMCYQLISG 753

Query: 338 LCKDG 342
           L ++G
Sbjct: 754 LREEG 758



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 2/231 (0%)

Query: 114 VQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAW 172
           +++  + +  LLN     G++++ +E L +++E  V+P   SYNIL++       ++ A 
Sbjct: 321 IRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAI 380

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
              ++M +R L+P  +TF T+I   C    VD A      ++    V P  + + SLI G
Sbjct: 381 LTTEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVE-KGVSPTVETYNSLING 439

Query: 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
               G         +EM +  I+ +   Y SLI+ L K  +  +   +L +M  RG  PN
Sbjct: 440 YGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPN 499

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  YN LI   C     + AF   DEM   G  A  ++YN ++ GL ++G+
Sbjct: 500 AEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGR 550



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 109/242 (45%), Gaps = 2/242 (0%)

Query: 47  LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMF 106
           L+ Y+ +I  LGR     + + +  Q+       P  I + ++I  Y ++   ++ L+++
Sbjct: 535 LVTYNTLINGLGRNGRVKKAEDLFLQMAGKG-CNPDVITYNSLISGYAKSVNTQKCLELY 593

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSR 166
           D+M    ++ TV  F+ L+      G +   K   ++++  + PD   YN +I+      
Sbjct: 594 DKMKILGIKPTVGTFHPLIYACRKEGVVTMDKMFQEMLQMDLVPDQFVYNEMIYSYAEDG 653

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
            +  A  +  +MV + +    VT+ +LI     + RV E   L +D M+   + P    +
Sbjct: 654 NVMKAMSLHQQMVDQGVDCDKVTYNSLILAYLRDRRVSEIKHLVDD-MKAKGLVPKVDTY 712

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
             LIKGLC + + + A     EMV   + ++  +   LIS L + G   E   +  E+  
Sbjct: 713 NILIKGLCDLKDFNGAYFWYREMVERGLLLNVSMCYQLISGLREEGMLREAQIVSSELSI 772

Query: 287 RG 288
            G
Sbjct: 773 GG 774


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 134/274 (48%), Gaps = 18/274 (6%)

Query: 87  CN-VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145
           CN VIG + R    + A+ ++ +M    + + +  FN L+     C KL      F  + 
Sbjct: 109 CNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLT 168

Query: 146 KY-VSPDACSYNILIHGCVVSRRLEDAWKVF---------------DEMVKRRLQPTLVT 189
           K    PD  ++N L+HG  +  R+ +A  +F               D+MV+  L P ++T
Sbjct: 169 KLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVIT 228

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           F TLI GLCLE RV EA  L    M    +  D   + +++ G+C +G+   AL +  +M
Sbjct: 229 FNTLINGLCLEGRVLEAAALVNK-MVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKM 287

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
               I+ D  IYS++I  L K G  ++   +  EM E+G  PN  TYN +I GFC    +
Sbjct: 288 EETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRW 347

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             A  +L +M ++    + +++N ++    K+GK
Sbjct: 348 SDAQRLLRDMIEREINPDVLTFNALISASVKEGK 381



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 160/366 (43%), Gaps = 58/366 (15%)

Query: 17  DPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD 76
           D K AL L        +  E   +KP   +++ Y  II +L +     + Q +  ++  +
Sbjct: 276 DTKSALNLL-------SKMEETHIKP---DVVIYSAIIDRLCKDGHHSDAQYLFSEML-E 324

Query: 77  TRIVPKEIIF-CNVIGF--YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133
             I P    + C + GF  +GR    +R L+   +M    +   V  FN L++  +  GK
Sbjct: 325 KGIAPNVFTYNCMIDGFCSFGRWSDAQRLLR---DMIEREINPDVLTFNALISASVKEGK 381

Query: 134 LDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           L   ++L  +++ + + PD  +YN +I+G     R +DA  +FD M      P +VTF T
Sbjct: 382 LFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNT 437

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR- 251
           +I   C   RVDE ++L  +I R   +  +   + +LI G C V  L+ A  + +EM+  
Sbjct: 438 IIDVYCRAKRVDEGMQLLREISR-RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISH 496

Query: 252 ----------------------------------DKIEMDAGIYSSLISALFKAGRKNEF 277
                                              KI++D   Y+ +I  + K  + +E 
Sbjct: 497 GVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEA 556

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +   +   G +P+  TYN +ISGFC +     A  +  +M D G + +  +YN ++ G
Sbjct: 557 WDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRG 616

Query: 338 LCKDGK 343
             K G+
Sbjct: 617 CLKAGE 622



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 126/262 (48%), Gaps = 7/262 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I    +   FD+ + +      D    P  + F  +I  Y RA+ ++  +Q+  E+
Sbjct: 404 YNSMIYGFCKHNRFDDAKHMF-----DLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREI 458

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
           S   +      +NTL++       L+  ++LFQ M  + V PD  + NIL++G   + +L
Sbjct: 459 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 518

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E+A ++F+ +   ++    V +  +I+G+C   +VDEA  L    + ++ V+PD Q +  
Sbjct: 519 EEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCS-LPIHGVEPDVQTYNV 577

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I G C    +S A  +  +M  +  E D   Y++LI    KAG  ++   ++ EM+  G
Sbjct: 578 MISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNG 637

Query: 289 CKPNSVTYNALISGFCKEEDFE 310
              ++ T        C+  D E
Sbjct: 638 FSGDAFTIKMAEEIICRVSDEE 659



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 135/288 (46%), Gaps = 11/288 (3%)

Query: 54  ITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFN 113
           +TKLG          +LH L  + RI     +F    G+      LE A+ +FD+M    
Sbjct: 167 LTKLGFQPDVVTFNTLLHGLCLEDRISEALALF----GYMVETGFLE-AVALFDQMVEIG 221

Query: 114 VQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAW 172
           +   V  FNTL+N     G++     L  +++ K +  D  +Y  +++G       + A 
Sbjct: 222 LTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSAL 281

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
            +  +M +  ++P +V +  +I  LC +    +A  L  +++    + P+   +  +I G
Sbjct: 282 NLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLE-KGIAPNVFTYNCMIDG 340

Query: 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
            C+ G  S A  +  +M+  +I  D   +++LISA  K G+  E   +  EM  R   P+
Sbjct: 341 FCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPD 400

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +VTYN++I GFCK   F+ A  + D M       + +++N I+   C+
Sbjct: 401 TVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCR 444



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 139/290 (47%), Gaps = 8/290 (2%)

Query: 52  LIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111
           LI   +   K+F E +++  ++ H   I P  + + ++I  + +    + A  MFD M+S
Sbjct: 372 LISASVKEGKLF-EAEKLCDEMLHRC-IFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS 429

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVVSRRLED 170
            +V      FNT+++      ++D  M+ L +I  + +  +  +YN LIHG      L  
Sbjct: 430 PDVVT----FNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNA 485

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           A  +F EM+   + P  +T   L+YG C   +++EAL+L E ++++  +  D   +  +I
Sbjct: 486 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFE-VIQMSKIDLDTVAYNIII 544

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
            G+C   ++  A  +   +    +E D   Y+ +IS        ++   +  +MK+ G +
Sbjct: 545 HGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHE 604

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           P++ TYN LI G  K  + + +  ++ EM   G   +  +  +    +C+
Sbjct: 605 PDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMAEEIICR 654


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 149/299 (49%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ ++  L  AK + ++++++ ++       P  + F  +IG+  R  L ER  ++
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEELMDEMVR-VDCAPNIVTFNTLIGYLCRNGLFERVHEV 273

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
             +MS       ++ + T+++     G L+   E+   M  Y + P+   YN ++ G   
Sbjct: 274 LAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCS 333

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R ++A ++  EM ++      VTF  L+   C    VD  ++L E ++  +   PD  
Sbjct: 334 AERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLS-HGCMPDVI 392

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + ++I G C  G +  A+ + + M     + +   Y+ ++  L  AGR  +   ++ +M
Sbjct: 393 TYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQM 452

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ++GC PN VT+N LI+  CK+   E A  +L +M   GC  + ISY+ ++ GL K GK
Sbjct: 453 IQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 511



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 159/312 (50%), Gaps = 8/312 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIG 91
           N   ++ LKP   N++ Y+ ++  L  A+ + E +++L ++ + D  +   ++ F  ++ 
Sbjct: 310 NRMPSYGLKP---NVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPL--DDVTFNILVD 364

Query: 92  FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSP 150
           F+ +  L++R +++ ++M S      V  + T++N     G +D    L + M      P
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKP 424

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           +  SY I++ G   + R  DA ++  +M+++   P  VTF TLI  LC +  V++A++L 
Sbjct: 425 NTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELL 484

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
           +  M V    PD   ++++I GL   G+   AL +   MV   I  +  IYSS+  AL +
Sbjct: 485 KQ-MLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSR 543

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            GR N+   +   +K+   + ++V YNA+IS  CK  + + A      M   GC  N  +
Sbjct: 544 EGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNEST 603

Query: 331 YNVILGGLCKDG 342
           Y +++ GL  +G
Sbjct: 604 YTMLIKGLASEG 615



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 150/299 (50%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ ++ +I  L R  +F+ + ++L Q+  +    P   ++  +I    +   LE A ++
Sbjct: 250 NIVTFNTLIGYLCRNGLFERVHEVLAQMS-EHGCTPDIRMYATIIDGICKEGHLEVANEI 308

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILIHGCVV 164
            + M S+ ++  V  +NT+L    +  +    +EL   M +   P D  ++NIL+     
Sbjct: 309 LNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQ 368

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  ++   ++ ++M+     P ++T+ T+I G C E  +DEA+ L +  M     KP+  
Sbjct: 369 NGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS-MSSCGCKPNTV 427

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  ++KGLC+ G    A  +  +M++     +   +++LI+ L K G   +   +LK+M
Sbjct: 428 SYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM 487

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              GC P+ ++Y+ +I G  K    E A  +L+ M +KG   N I Y+ I   L ++G+
Sbjct: 488 LVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGR 546



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 128/296 (43%), Gaps = 50/296 (16%)

Query: 87  CNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK 146
           C   GF    R+LE        M +    +     N +LN     G +D    L + +  
Sbjct: 157 CRSGGFRNSVRVLE-------AMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAF 209

Query: 147 Y-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC---LELR 202
           +    D  SYN ++ G  +++R  D  ++ DEMV+    P +VTF TLI  LC   L  R
Sbjct: 210 FGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFER 269

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
           V E L      M  +   PD +++A++I G+C  G L +A  +   M    ++ +   Y+
Sbjct: 270 VHEVLAQ----MSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYN 325

Query: 263 SLISALFKAGRKNEFPAILKEMKER----------------------------------- 287
           +++  L  A R  E   +L EM ++                                   
Sbjct: 326 TVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSH 385

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           GC P+ +TY  +I+GFCKE   + A  +L  M   GCK N +SY ++L GLC  G+
Sbjct: 386 GCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGR 441



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 13/201 (6%)

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE------L 201
           V P+A ++  ++ G     R+ DA +V DEM  +   P    +  ++   C        +
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
           RV EA+  K   +   N          ++  +C  G +  A+G+  ++     E D   Y
Sbjct: 167 RVLEAMHAKGCTLDTGNCN-------LVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSY 219

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           ++++  L  A R  +   ++ EM    C PN VT+N LI   C+   FE    +L +M +
Sbjct: 220 NAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE 279

Query: 322 KGCKANPISYNVILGGLCKDG 342
            GC  +   Y  I+ G+CK+G
Sbjct: 280 HGCTPDIRMYATIIDGICKEG 300


>gi|356574874|ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 576

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 155/329 (47%), Gaps = 41/329 (12%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I+   R+  FD   +++ ++K+     P  + +  +IG       L+ AL++ D++
Sbjct: 149 YNAVISGFCRSDRFDAANRVILRMKYRG-FSPDVVTYNILIGSLCARGKLDLALKVMDQL 207

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIHGC----VV 164
              N   TV  +  L+   +  G +D  M+ L ++M + + PD  +YN+++ G     +V
Sbjct: 208 LEDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMMSRGLQPDMYTYNVIVRGMCKRGLV 267

Query: 165 SR----------------------------RLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
            R                            R E   ++  +M+ +  +P +VT+  LI  
Sbjct: 268 DRAFEFVSNLNTTPSLNLYNLLLKGLLNEGRWEAGERLMSDMIVKGCEPNIVTYSVLISS 327

Query: 197 LCLELRVDEALKLKEDIMRVYNVK---PDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           LC + +  EA+    D++RV   K   PD   +  LI   C  G++ LA+G  ++M+   
Sbjct: 328 LCRDGKAGEAV----DVLRVMKEKGLNPDAYCYDPLISAFCKEGKVDLAIGFVDDMISAG 383

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
              D   Y++++ +L K GR +E   I K+++E GC PN+ +YN +        D   A 
Sbjct: 384 WLPDIVNYNTIMGSLCKKGRADEALNIFKKLEEVGCPPNASSYNTMFGALWSSGDKIRAL 443

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDG 342
           T++ EM   G   + I+YN ++  LC+DG
Sbjct: 444 TMILEMLSNGVDPDRITYNSLISSLCRDG 472



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 132/264 (50%), Gaps = 5/264 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMKE 139
           P    +  VI  + R+   + A ++   M        V  +N L+      GKLD  +K 
Sbjct: 144 PDSFAYNAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTYNILIGSLCARGKLDLALKV 203

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           + Q++E   +P   +Y ILI   ++   ++DA ++ DEM+ R LQP + T+  ++ G+C 
Sbjct: 204 MDQLLEDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMMSRGLQPDMYTYNVIVRGMCK 263

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
              VD A +   ++    N  P   ++  L+KGL   G       +  +M+    E +  
Sbjct: 264 RGLVDRAFEFVSNL----NTTPSLNLYNLLLKGLLNEGRWEAGERLMSDMIVKGCEPNIV 319

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YS LIS+L + G+  E   +L+ MKE+G  P++  Y+ LIS FCKE   + A   +D+M
Sbjct: 320 TYSVLISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLISAFCKEGKVDLAIGFVDDM 379

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
              G   + ++YN I+G LCK G+
Sbjct: 380 ISAGWLPDIVNYNTIMGSLCKKGR 403



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 114/223 (51%), Gaps = 2/223 (0%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           ++ L++     GK     ++ ++M EK ++PDA  Y+ LI       +++ A    D+M+
Sbjct: 321 YSVLISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLISAFCKEGKVDLAIGFVDDMI 380

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
                P +V + T++  LC + R DEAL + + +  V    P+   + ++   L + G+ 
Sbjct: 381 SAGWLPDIVNYNTIMGSLCKKGRADEALNIFKKLEEV-GCPPNASSYNTMFGALWSSGDK 439

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             AL +  EM+ + ++ D   Y+SLIS+L + G  +E   +L +M+    +P  ++YN +
Sbjct: 440 IRALTMILEMLSNGVDPDRITYNSLISSLCRDGMVDEAIGLLVDMERTEWQPTVISYNIV 499

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + G CK      A  +L  M D GC+ N  +Y +++ G+   G
Sbjct: 500 LLGLCKAHRIVDAIEVLAVMVDNGCQPNETTYTLLVEGVGYAG 542



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 66/111 (59%), Gaps = 1/111 (0%)

Query: 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
           LC  G+ + AL   E+MV+   + D  + + LI  LF + R  +   +++ +++ G  P+
Sbjct: 87  LCKTGKYTEALYFLEQMVKRGYKPDVILCTKLIKGLFTSKRTEKAVRVMEILEQYG-DPD 145

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           S  YNA+ISGFC+ + F+AA  ++  M  +G   + ++YN+++G LC  GK
Sbjct: 146 SFAYNAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTYNILIGSLCARGK 196


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 150/296 (50%), Gaps = 3/296 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + N+  Y+ +I        +D+  Q+L  +    +I P  + F  +I    +   L 
Sbjct: 294 KGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMIT-RKITPNVVTFSALIDSLVKEGKLT 352

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            A  +++EM +  ++     +N+L+       +LD   ++  +M  K   PD  +YNILI
Sbjct: 353 EAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILI 412

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +G   +++++D  ++F +M  R +    VT+ TLI G C   ++  A K+ ++ M    V
Sbjct: 413 NGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQE-MVSQGV 471

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P    +A L+ GLC  GEL  ALG+ ++M + K+E+D GIY+ +I  +  A + ++  +
Sbjct: 472 HPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWS 531

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +   +  +G K +  +YN ++SG CK      A  +  +M + G + +  +YN ++
Sbjct: 532 LFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLI 587



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 153/331 (46%), Gaps = 38/331 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y  I+ ++ ++        +L +++H  +I P  + +  +I    +   L+ AL  
Sbjct: 229 NQFTYGPILNRMCKSGNTASALDLLRKMEH-RKIKPHVVTYTIIIDNLCKDGRLDDALSF 287

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F EM +  ++  V  +N+L+    + G+ D   +L + M  + ++P+  +++ LI   V 
Sbjct: 288 FSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVK 347

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L +A  +++EM+ R ++P  +T+ +LIYGLC + R+DEA ++  D+M      PD  
Sbjct: 348 EGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMM-DLMVSKGCDPDIW 406

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LI G C   ++   + +  +M    +  D   YS+LI    ++ +      + +EM
Sbjct: 407 TYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEM 466

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG------DKG---------CKANPI 329
             +G  P  +TY  L+ G C   + E A  ILD+M       D G         C AN +
Sbjct: 467 VSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKV 526

Query: 330 --------------------SYNVILGGLCK 340
                               SYN++L GLCK
Sbjct: 527 DDAWSLFCSLPSKGVKRDIQSYNIMLSGLCK 557



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 155/313 (49%), Gaps = 25/313 (7%)

Query: 40  LKPFRYNLLHYDLIIT------KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GF 92
           LK   Y+L   +++I       KLG A  F  M +I  +L ++    P  + F  ++ G 
Sbjct: 118 LKGIAYDLYTLNIMINCFCRRRKLGFA--FSAMGKIF-KLGYE----PNTVTFNTLLNGL 170

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDA 152
               R+ E A+++ D M        +   NT++N    C K DR+ E   ++ + ++ + 
Sbjct: 171 CLEGRVFE-AVELVDCMVLSQHVPDLITLNTIVNG--LCLK-DRVSEAVDLIARMMA-NG 225

Query: 153 CSYNILIHGCVVSR-----RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           C  N   +G +++R         A  +  +M  R+++P +VT+  +I  LC + R+D+AL
Sbjct: 226 CQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDAL 285

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
               + M    +K +   + SLI   C+ G       +  +M+  KI  +   +S+LI +
Sbjct: 286 SFFSE-METKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDS 344

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L K G+  E   +  EM  RG +PN++TYN+LI G C ++  + A  ++D M  KGC  +
Sbjct: 345 LVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPD 404

Query: 328 PISYNVILGGLCK 340
             +YN+++ G CK
Sbjct: 405 IWTYNILINGFCK 417



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 134/282 (47%), Gaps = 21/282 (7%)

Query: 81  PKEIIFCNVIGFYG--------------RARLLE----RALQMFDEMSSFNVQMTVKFFN 122
           P E  FC V GF G              R+ L++     A+ +F  M       TV  FN
Sbjct: 36  PYEFFFC-VQGFSGLTSDRKMSSYKERLRSGLVDIKKDDAVALFQSMLRSRPLPTVIDFN 94

Query: 123 TLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
            L        + D +  L + ME K ++ D  + NI+I+     R+L  A+    ++ K 
Sbjct: 95  RLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKL 154

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
             +P  VTF TL+ GLCLE RV EA++L  D M +    PD     +++ GLC    +S 
Sbjct: 155 GYEPNTVTFNTLLNGLCLEGRVFEAVELV-DCMVLSQHVPDLITLNTIVNGLCLKDRVSE 213

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           A+ +   M+ +  + +   Y  +++ + K+G       +L++M+ R  KP+ VTY  +I 
Sbjct: 214 AVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIID 273

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             CK+   + A +   EM  KG KAN  +YN ++G  C  G+
Sbjct: 274 NLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGR 315



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 122/265 (46%), Gaps = 2/265 (0%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           VP  I    ++        +  A+ +   M +   Q     +  +LN     G      +
Sbjct: 192 VPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALD 251

Query: 140 LFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L + ME + + P   +Y I+I       RL+DA   F EM  + ++  + T+ +LI   C
Sbjct: 252 LLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFC 311

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              R D+  +L  D M    + P+   F++LI  L   G+L+ A  +  EM+   IE + 
Sbjct: 312 SFGRWDDGAQLLRD-MITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNT 370

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y+SLI  L    R +E   ++  M  +GC P+  TYN LI+GFCK +  +    +  +
Sbjct: 371 ITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRK 430

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M  +G  A+ ++Y+ ++ G C+  K
Sbjct: 431 MSLRGMIADTVTYSTLIQGFCQSRK 455



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 139/301 (46%), Gaps = 7/301 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNV-IGFYGRARLLERALQ 104
            ++ ++ +   L R K +D +  +  Q+  + + +  ++   N+ I  + R R L  A  
Sbjct: 89  TVIDFNRLFGLLARTKQYDLVLALCKQM--ELKGIAYDLYTLNIMINCFCRRRKLGFAFS 146

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDACSYNILIHGC 162
              ++     +     FNTLLN     G++    EL    ++ ++V PD  + N +++G 
Sbjct: 147 AMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHV-PDLITLNTIVNGL 205

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
            +  R+ +A  +   M+    QP   T+G ++  +C       AL L    M    +KP 
Sbjct: 206 CLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRK-MEHRKIKPH 264

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              +  +I  LC  G L  AL    EM    I+ +   Y+SLI +    GR ++   +L+
Sbjct: 265 VVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLR 324

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +M  R   PN VT++ALI    KE     A  + +EM  +G + N I+YN ++ GLC D 
Sbjct: 325 DMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDK 384

Query: 343 K 343
           +
Sbjct: 385 R 385



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 2/243 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIH 160
           AL +  +M    ++  V  +  +++     G+LD     F  ME K +  +  +YN LI 
Sbjct: 249 ALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIG 308

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                 R +D  ++  +M+ R++ P +VTF  LI  L  E ++ EA  L  + M    ++
Sbjct: 309 SFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNE-MITRGIE 367

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   + SLI GLC    L  A  + + MV    + D   Y+ LI+   KA + ++   +
Sbjct: 368 PNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRL 427

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            ++M  RG   ++VTY+ LI GFC+      A  +  EM  +G     ++Y ++L GLC 
Sbjct: 428 FRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCD 487

Query: 341 DGK 343
           +G+
Sbjct: 488 NGE 490



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 106/218 (48%), Gaps = 11/218 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y+++I    +AK  D+  ++  ++     ++   + +  +I  + ++R L  A ++
Sbjct: 404 DIWTYNILINGFCKAKQVDDGMRLFRKMSLRG-MIADTVTYSTLIQGFCQSRKLIVAKKV 462

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVV 164
           F EM S  V   +  +  LL+     G+L+    +   M K  +  D   YNI+IHG   
Sbjct: 463 FQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCN 522

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA----LKLKEDIMRVYNVK 220
           + +++DAW +F  +  + ++  + ++  ++ GLC    + EA     K+KED       +
Sbjct: 523 ANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKED-----GYE 577

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
           PDG  + +LI+      +++ ++ + EEM R     DA
Sbjct: 578 PDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDA 615


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 149/299 (49%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ ++  L  AK + ++++++ ++       P  + F  +IG+  R  L ER  ++
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEELMDEMVR-VDCAPNIVTFNTLIGYLCRNGLFERVHEV 273

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
             +MS       ++ + T+++     G L+   E+   M  Y + P+   YN ++ G   
Sbjct: 274 LAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCS 333

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R ++A ++  EM ++      VTF  L+   C    VD  ++L E ++  +   PD  
Sbjct: 334 AERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLS-HGCMPDVI 392

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + ++I G C  G +  A+ + + M     + +   Y+ ++  L  AGR  +   ++ +M
Sbjct: 393 TYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQM 452

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ++GC PN VT+N LI+  CK+   E A  +L +M   GC  + ISY+ ++ GL K GK
Sbjct: 453 IQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 511



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 159/312 (50%), Gaps = 8/312 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIG 91
           N   ++ LKP   N++ Y+ ++  L  A+ + E +++L ++ + D  +   ++ F  ++ 
Sbjct: 310 NRMPSYGLKP---NVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPL--DDVTFNILVD 364

Query: 92  FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSP 150
           F+ +  L++R +++ ++M S      V  + T++N     G +D    L + M      P
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKP 424

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           +  SY I++ G   + R  DA ++  +M+++   P  VTF TLI  LC +  V++A++L 
Sbjct: 425 NTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELL 484

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
           +  M V    PD   ++++I GL   G+   AL +   MV   I  +  IYSS+  AL +
Sbjct: 485 KQ-MLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSR 543

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            GR N+   +   +K+   + ++V YNA+IS  CK  + + A      M   GC  N  +
Sbjct: 544 EGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNEST 603

Query: 331 YNVILGGLCKDG 342
           Y +++ GL  +G
Sbjct: 604 YTMLIKGLASEG 615



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 150/299 (50%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ ++ +I  L R  +F+ + ++L Q+  +    P   ++  +I    +   LE A ++
Sbjct: 250 NIVTFNTLIGYLCRNGLFERVHEVLAQMS-EHGCTPDIRMYATIIDGICKEGHLEVANEI 308

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILIHGCVV 164
            + M S+ ++  V  +NT+L    +  +    +EL   M +   P D  ++NIL+     
Sbjct: 309 LNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQ 368

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  ++   ++ ++M+     P ++T+ T+I G C E  +DEA+ L +  M     KP+  
Sbjct: 369 NGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS-MSSCGCKPNTV 427

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  ++KGLC+ G    A  +  +M++     +   +++LI+ L K G   +   +LK+M
Sbjct: 428 SYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM 487

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              GC P+ ++Y+ +I G  K    E A  +L+ M +KG   N I Y+ I   L ++G+
Sbjct: 488 LVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGR 546



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 128/296 (43%), Gaps = 50/296 (16%)

Query: 87  CNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK 146
           C   GF    R+LE        M +    +     N +LN     G +D    L + +  
Sbjct: 157 CRSGGFRNSVRVLE-------AMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAF 209

Query: 147 Y-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC---LELR 202
           +    D  SYN ++ G  +++R  D  ++ DEMV+    P +VTF TLI  LC   L  R
Sbjct: 210 FGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFER 269

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
           V E L      M  +   PD +++A++I G+C  G L +A  +   M    ++ +   Y+
Sbjct: 270 VHEVLAQ----MSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYN 325

Query: 263 SLISALFKAGRKNEFPAILKEMKER----------------------------------- 287
           +++  L  A R  E   +L EM ++                                   
Sbjct: 326 TVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSH 385

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           GC P+ +TY  +I+GFCKE   + A  +L  M   GCK N +SY ++L GLC  G+
Sbjct: 386 GCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGR 441



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 13/201 (6%)

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE------L 201
           V P+A ++  ++ G     R+ DA +V DEM  +   P    +  ++   C        +
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
           RV EA+  K   +   N          ++  +C  G +  A+G+  ++     E D   Y
Sbjct: 167 RVLEAMHAKGCTLDTGNCN-------LVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSY 219

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           ++++  L  A R  +   ++ EM    C PN VT+N LI   C+   FE    +L +M +
Sbjct: 220 NAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE 279

Query: 322 KGCKANPISYNVILGGLCKDG 342
            GC  +   Y  I+ G+CK+G
Sbjct: 280 HGCTPDIRMYATIIDGICKEG 300


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 149/299 (49%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ ++  L  AK + ++++++ ++       P  + F  +IG+  R  L ER  ++
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEELMDEMVR-VDCAPNIVTFNTLIGYLCRNGLFERVHEV 273

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
             +MS       ++ + T+++     G L+   E+   M  Y + P+   YN ++ G   
Sbjct: 274 LAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCS 333

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R ++A ++  EM ++      VTF  L+   C    VD  ++L E ++  +   PD  
Sbjct: 334 AERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLS-HGCMPDVI 392

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + ++I G C  G +  A+ + + M     + +   Y+ ++  L  AGR  +   ++ +M
Sbjct: 393 TYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQM 452

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ++GC PN VT+N LI+  CK+   E A  +L +M   GC  + ISY+ ++ GL K GK
Sbjct: 453 IQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 511



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 159/312 (50%), Gaps = 8/312 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIG 91
           N   ++ LKP   N++ Y+ ++  L  A+ + E +++L ++ + D  +   ++ F  ++ 
Sbjct: 310 NRMPSYGLKP---NVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPL--DDVTFNILVD 364

Query: 92  FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSP 150
           F+ +  L++R +++ ++M S      V  + T++N     G +D    L + M      P
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKP 424

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           +  SY I++ G   + R  DA ++  +M+++   P  VTF TLI  LC +  V++A++L 
Sbjct: 425 NTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELL 484

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
           +  M V    PD   ++++I GL   G+   AL +   MV   I  +  IYSS+  AL +
Sbjct: 485 KQ-MLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSR 543

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            GR N+   +   +K+   + ++V YNA+IS  CK  + + A      M   GC  N  +
Sbjct: 544 EGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNEST 603

Query: 331 YNVILGGLCKDG 342
           Y +++ GL  +G
Sbjct: 604 YTMLIKGLASEG 615



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 150/299 (50%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ ++ +I  L R  +F+ + ++L Q+  +    P   ++  +I    +   LE A ++
Sbjct: 250 NIVTFNTLIGYLCRNGLFERVHEVLAQMS-EHGCTPDIRMYATIIDGICKEGHLEVANEI 308

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILIHGCVV 164
            + M S+ ++  V  +NT+L    +  +    +EL   M +   P D  ++NIL+     
Sbjct: 309 LNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQ 368

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  ++   ++ ++M+     P ++T+ T+I G C E  +DEA+ L +  M     KP+  
Sbjct: 369 NGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS-MSSCGCKPNTV 427

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  ++KGLC+ G    A  +  +M++     +   +++LI+ L K G   +   +LK+M
Sbjct: 428 SYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM 487

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              GC P+ ++Y+ +I G  K    E A  +L+ M +KG   N I Y+ I   L ++G+
Sbjct: 488 LVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGR 546



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 128/296 (43%), Gaps = 50/296 (16%)

Query: 87  CNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK 146
           C   GF    R+LE        M +    +     N +LN     G +D    L + +  
Sbjct: 157 CRSGGFRNSVRVLE-------AMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAF 209

Query: 147 Y-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC---LELR 202
           +    D  SYN ++ G  +++R  D  ++ DEMV+    P +VTF TLI  LC   L  R
Sbjct: 210 FGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFER 269

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
           V E L      M  +   PD +++A++I G+C  G L +A  +   M    ++ +   Y+
Sbjct: 270 VHEVLAQ----MSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYN 325

Query: 263 SLISALFKAGRKNEFPAILKEMKER----------------------------------- 287
           +++  L  A R  E   +L EM ++                                   
Sbjct: 326 TVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSH 385

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           GC P+ +TY  +I+GFCKE   + A  +L  M   GCK N +SY ++L GLC  G+
Sbjct: 386 GCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGR 441



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 13/201 (6%)

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE------L 201
           V P+A ++  ++ G     R+ DA +V DEM  +   P    +  ++   C        +
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
           RV EA+  K   +   N          ++  +C  G +  A+G+  ++     E D   Y
Sbjct: 167 RVLEAMHAKGCTLDTGNCN-------LVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSY 219

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           ++++  L  A R  +   ++ EM    C PN VT+N LI   C+   FE    +L +M +
Sbjct: 220 NAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE 279

Query: 322 KGCKANPISYNVILGGLCKDG 342
            GC  +   Y  I+ G+CK+G
Sbjct: 280 HGCTPDIRMYATIIDGICKEG 300


>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 418

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 130/244 (53%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y +   L+   ++ + M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 169 PSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++  + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G L  A   ++ M+++ I +D  
Sbjct: 289 KGDLKQAQDLTDE-MSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP   TY  +I+ FCK+ D      +L EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407

Query: 320 GDKG 323
              G
Sbjct: 408 QRDG 411



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 126/228 (55%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++  +  G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E ++D+A +L ++++    + P+G  F +LI G C 
Sbjct: 195 NAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD-NGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   +  EM  +G KP+ +T
Sbjct: 254 NGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE   E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGR 361



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/267 (32%), Positives = 135/267 (50%), Gaps = 9/267 (3%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ + ++ +V  FNTL+N  +  G LD 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M+   V PD  +Y++LI+G     +++DA ++FDEM+   L P  VTF TLI 
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   RVD A+++ + ++   ++ PD   + +LI GLC  G+L  A  + +EM    ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLK 308

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI    K G         K M +   + + V Y ALISG C+E     A  +
Sbjct: 309 PDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
           L EM   G K    +Y +I+   CK G
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 2/198 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           ++ A ++FDEM    +      F TL++     G++D   E++ Q++ + +SPD  +YN 
Sbjct: 222 MDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 281

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G      L+ A  + DEM  + L+P  +T+ TLI G C E  ++ A + ++ +++  
Sbjct: 282 LIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKE- 340

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N++ D   + +LI GLC  G    A  +  EM+   ++ + G Y+ +I+   K G     
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400

Query: 278 PAILKEMKERGCKPNSVT 295
             +LKEM+  G  P+ VT
Sbjct: 401 SKLLKEMQRDGYAPSVVT 418



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 51/103 (49%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE +          ++ L+ +  K G      ++   + + G +P+ V++N L+
Sbjct: 119 LVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ K  + +  F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 147/303 (48%), Gaps = 3/303 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + F  +++ Y+++I  L   +       +L QL  D   +P  I +  +I        + 
Sbjct: 176 RGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDN-CMPTVITYTILIEATIVEGGIN 234

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
            A+++ +EM +  +   +  +N ++      G ++R  EL   +  K   PD  SYNIL+
Sbjct: 235 EAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILL 294

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
              +   + ++  K+  EM  R  +P  VT+  LI  LC   R+DEA+ + + +M    +
Sbjct: 295 RAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLK-VMIEKEL 353

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   +  LI  LC  G L LA+G+ + M+ +    D   Y+++++AL K G  N+   
Sbjct: 354 TPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALE 413

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           I  +++  GC PN  +YN +IS      D   A  ++  M  KG   + I+YN ++  LC
Sbjct: 414 IFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLC 473

Query: 340 KDG 342
           +DG
Sbjct: 474 RDG 476



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 163/333 (48%), Gaps = 23/333 (6%)

Query: 29  NPNPND-------------TEAHP--LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL 73
           NPNPND              EA P  L+ + +   H   ++ +  +A  F+E    L  L
Sbjct: 45  NPNPNDGYNSRNSPKVGVSAEARPAHLQSYDFRETHLMKLLNRSCKAGKFNESLYFLECL 104

Query: 74  KHDTRIVPKEIIFCN--VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131
            +  +    ++I C   + GF+   + +E+A ++ + + S + +  V  +N +++     
Sbjct: 105 VN--KGYTPDVILCTKLIKGFF-NFKNIEKASRVMEILES-HTEPDVFAYNAVISGFCKV 160

Query: 132 GKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
            +++   ++   M+ +   PD  +YNI+I      R+L  A  V D+++     PT++T+
Sbjct: 161 NQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITY 220

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
             LI    +E  ++EA+KL E+ M    + PD   + ++I+G+C  G +  A  +   + 
Sbjct: 221 TILIEATIVEGGINEAMKLLEE-MLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLT 279

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
               E D   Y+ L+ A    G+ +E   ++ EM  RGC+PN VTY+ LIS  C+    +
Sbjct: 280 SKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRID 339

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            A ++L  M +K    +  SY+ ++  LCK+G+
Sbjct: 340 EAISVLKVMIEKELTPDTYSYDPLISALCKEGR 372



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 147/296 (49%), Gaps = 7/296 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERAL 103
           ++  Y+ II  + +  M +   +++  L   ++    ++I  N++   F  + +  +   
Sbjct: 251 DMYTYNAIIRGMCKEGMVERAAELITSLT--SKGCEPDVISYNILLRAFLNQGKW-DEGE 307

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGC 162
           ++  EM S   +     ++ L++     G++D    + ++M EK ++PD  SY+ LI   
Sbjct: 308 KLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISAL 367

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
               RL+ A  + D M+     P +V + T++  LC     ++AL++    +R     P+
Sbjct: 368 CKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNK-LRGMGCPPN 426

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + ++I  L + G+ S ALG+   M+   I+ D   Y+SLIS L + G   E   +L 
Sbjct: 427 VSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLD 486

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           +M++ G +P  ++YN ++ G CK    + A  +  EM +KGC+ N  +Y +++ G+
Sbjct: 487 DMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGI 542



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 3/232 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y ++I+ L R    DE   +L ++  +  + P    +  +I    +   L+ A+ +
Sbjct: 321 NKVTYSILISSLCRFGRIDEAISVL-KVMIEKELTPDTYSYDPLISALCKEGRLDLAIGI 379

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            D M S      +  +NT+L      G  ++  E+F  +      P+  SYN +I     
Sbjct: 380 MDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWS 439

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
                 A  +   M+ + + P  +T+ +LI  LC +  V+EA+ L +D M     +P   
Sbjct: 440 CGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDD-MEQSGFRPTVI 498

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
            +  ++ GLC V  +  A+G+  EM+      +   Y  LI  +  AG + E
Sbjct: 499 SYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTE 550


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 149/301 (49%), Gaps = 4/301 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R ++  Y  +I  LG+A  FDE     H+++ +    P  ++  N+I F G+A  L+ A+
Sbjct: 293 RPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREG-CRPDTVVINNMINFLGKAGRLDDAV 351

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTC-GKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
           ++F+EM +     +V  +NT++        ++  +   F+ M+   +SP   +Y+ILI G
Sbjct: 352 KLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDG 411

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              + R E A  + +EM ++   P    + +LI  L    R D A +L +++        
Sbjct: 412 FCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCG-SS 470

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
             +V+A +IK L   G L  A+ + +EM +     +   Y++L+S L +AG  +E    +
Sbjct: 471 SARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTM 530

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           + M+E GC P+  +YN +++G  K      A  +L  M     K + +SYN +LG +   
Sbjct: 531 RRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHA 590

Query: 342 G 342
           G
Sbjct: 591 G 591



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 137/294 (46%), Gaps = 11/294 (3%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS- 111
           II  LG AKM  +   I +Q+K   +  P    + ++I         E+  ++++EMS+ 
Sbjct: 161 IIRMLGNAKMISKAVAIFYQIK-VRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNE 219

Query: 112 ---FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRR 167
              F   +T   ++ L++     G+ D    L   M +  + P A  Y +LI        
Sbjct: 220 GHCFPDTVT---YSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNN 276

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           +  A  +F+EM  +  +P + T+  LI GL    R DEA     + MR    +PD  V  
Sbjct: 277 VHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHE-MRREGCRPDTVVIN 335

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA-GRKNEFPAILKEMKE 286
           ++I  L   G L  A+ + EEM   +       Y+++I ALF++  R +E  +  + MK 
Sbjct: 336 NMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKG 395

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            G  P+  TY+ LI GFCK    E A  +L+EM +KG    P +Y  ++  L K
Sbjct: 396 SGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 449



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 132/299 (44%), Gaps = 9/299 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I  L     ++++ ++ +++ ++    P  + +  +I  + +    + A+++ +EM
Sbjct: 193 YNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEM 252

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
               +Q T K +  L+        +     LF+ M  +Y  PD  +Y  LI G   + R 
Sbjct: 253 KDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRF 312

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           ++A+  F EM +   +P  V    +I  L    R+D+A+KL E+ M      P    + +
Sbjct: 313 DEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEE-MGTLQCIPSVVTYNT 371

Query: 229 LIKGL----CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           +IK L      + E+S      E M    I      YS LI    K  R  +   +L+EM
Sbjct: 372 IIKALFESKSRISEISSWF---ERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEM 428

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            E+G  P    Y +LI    K + ++ A  +  E+ +    ++   Y V++  L K G+
Sbjct: 429 DEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGR 487



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 90/179 (50%)

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           ++ +  A  +F ++  R+ QPT   + ++I  L  E + ++  +L  ++    +  PD  
Sbjct: 168 AKMISKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTV 227

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +++LI   C +G    A+ +  EM  + ++  A IY+ LI+  FK    +    + +EM
Sbjct: 228 TYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEM 287

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + + C+P+  TY  LI G  K   F+ A+    EM  +GC+ + +  N ++  L K G+
Sbjct: 288 RHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGR 346



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 2/128 (1%)

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI-YSSLISALFKAGRKNE 276
           N + D   + +LI+ L  V +      + +EMVR+ + +   +  S +I  L  A   ++
Sbjct: 114 NYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISK 173

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG-CKANPISYNVIL 335
             AI  ++K R C+P +  YN++I     E  +E    + +EM ++G C  + ++Y+ ++
Sbjct: 174 AVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALI 233

Query: 336 GGLCKDGK 343
              CK G+
Sbjct: 234 SAFCKLGR 241


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 130/273 (47%), Gaps = 10/273 (3%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           ++P  ++F  ++  + +AR L  A  +F  M  F V   +  +N L++ +   G +    
Sbjct: 334 LLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAM 393

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            L   ME   +SPD  +Y ILI+G     RL +A ++F  M   R+ P+ VT+ +LI+G 
Sbjct: 394 GLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGF 453

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C E  +++AL L  + M    V+P+   F++LI G C V  +  A+G+  EM    I  D
Sbjct: 454 CKEYNIEKALDLCSE-MTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPD 512

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y++LI A FK     E   +  +M E G  PN  T+  L+ GF KE     A     
Sbjct: 513 VVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFYL 572

Query: 318 EMGDKGCKAN--------PISYNVILGGLCKDG 342
           E        +         + +  ++ GLC++G
Sbjct: 573 ENNQAATGKSIVQRSCWKYVGFTCLIEGLCQNG 605



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 144/289 (49%), Gaps = 3/289 (1%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           I+  L R + FD +  + +QL     +VP   I+  +     +     +  ++ DEM+S 
Sbjct: 204 ILNGLVRRRRFDSVW-VDYQLMISRGLVPDVHIYSVLFQCCFKQGFPSKKEKLLDEMTSL 262

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDA 171
            V+  V  +   +       K++  +++F++M+ + V P+  +Y+ +I G   +  L  A
Sbjct: 263 GVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQA 322

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIK 231
           + ++ E++   L P +V FGTL+ G C    +  A  L   +++ + V P+  V+  LI 
Sbjct: 323 YGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVK-FGVDPNLYVYNCLIH 381

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           G C  G +  A+G+  EM    +  D   Y+ LI+ L    R  E   + + MK     P
Sbjct: 382 GQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFP 441

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +SVTYN+LI GFCKE + E A  +  EM   G + N I+++ ++ G CK
Sbjct: 442 SSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCK 490



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 135/299 (45%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y + I  L R    +E +++   +K    +VP    +  +I  Y +   L +A  +
Sbjct: 267 NVYIYTIYIRDLCRENKMEEAEKMFELMKIHG-VVPNLYTYSAMIDGYCKTGNLRQAYGL 325

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           + E+    +   V  F TL++      +L   + LF  M K+ V P+   YN LIHG   
Sbjct: 326 YKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCK 385

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S  + +A  +  EM    L P + T+  LI GLC E R+ EA +L +  M+   + P   
Sbjct: 386 SGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQR-MKNERIFPSSV 444

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SLI G C    +  AL +  EM    +E +   +S+LI    K         +  EM
Sbjct: 445 TYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEM 504

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G  P+ VTY  LI    KE + + A  +  +M + G   N  ++  ++ G  K+G+
Sbjct: 505 TIKGIVPDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGR 563



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 1/194 (0%)

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           V P+   Y I I       ++E+A K+F+ M    + P L T+  +I G C    + +A 
Sbjct: 264 VKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAY 323

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            L ++I+ V  + P+  VF +L+ G C   EL  A  +   MV+  ++ +  +Y+ LI  
Sbjct: 324 GLYKEIL-VAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHG 382

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
             K+G   E   +L EM+     P+  TY  LI+G C EE    A  +   M ++    +
Sbjct: 383 QCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPS 442

Query: 328 PISYNVILGGLCKD 341
            ++YN ++ G CK+
Sbjct: 443 SVTYNSLIHGFCKE 456



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 1/194 (0%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           SPD+ +   +++G V  RR +  W  +  M+ R L P +  +  L +  C +       +
Sbjct: 195 SPDSKACLAILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYSVL-FQCCFKQGFPSKKE 253

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
              D M    VKP+  ++   I+ LC   ++  A  + E M    +  +   YS++I   
Sbjct: 254 KLLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGY 313

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K G   +   + KE+      PN V +  L+ GFCK  +  AA ++   M   G   N 
Sbjct: 314 CKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNL 373

Query: 329 ISYNVILGGLCKDG 342
             YN ++ G CK G
Sbjct: 374 YVYNCLIHGQCKSG 387



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 130/285 (45%), Gaps = 13/285 (4%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           ++ E+  L P   ++  Y ++I  L   +   E  ++  ++K++ RI P  + + ++I  
Sbjct: 397 SEMESLNLSP---DVFTYTILINGLCTEERLAEANRLFQRMKNE-RIFPSSVTYNSLIHG 452

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPD 151
           + +   +E+AL +  EM+S  V+  +  F+TL++       +   M   F++  K + PD
Sbjct: 453 FCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPD 512

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +Y  LI        +++A +++ +M++  + P   TF  L+ G   E R+ +A+    
Sbjct: 513 VVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFYL 572

Query: 212 DIMRVYNVKPDGQV-------FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           +  +    K   Q        F  LI+GLC  G +  A     +M    +  D   Y S+
Sbjct: 573 ENNQAATGKSIVQRSCWKYVGFTCLIEGLCQNGYILRASRFFSDMKSGGVTPDIWSYVSM 632

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           + A  +  R  +   +  +M + G  PN +  N L++ F +E  +
Sbjct: 633 LKAHLREKRITDTMMLHCDMIKTGILPN-LMVNQLLAMFYQENGY 676



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 26/201 (12%)

Query: 166 RRLEDAWKVFDEMVKRRLQPT--LVTFGTLIYGL----------CLELRVDEALKLKED- 212
           R  E+A+++F+     RL  T  L +F  +I+ L          CL   + E L+   + 
Sbjct: 86  RSAEEAFRLFETSSISRLSKTTDLQSFSAVIHVLTGAHKYTLARCLIKSLIERLRRYSEP 145

Query: 213 ---IMRVYNVKPDGQ-------VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
                R++N   D Q       VF+ LI     +G    AL V  EM   +   D+    
Sbjct: 146 TNISHRLFNALEDIQSPKFSIGVFSLLIMEFLEMGLFEDALWVSREM---RCSPDSKACL 202

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           ++++ L +  R +      + M  RG  P+   Y+ L     K+        +LDEM   
Sbjct: 203 AILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYSVLFQCCFKQGFPSKKEKLLDEMTSL 262

Query: 323 GCKANPISYNVILGGLCKDGK 343
           G K N   Y + +  LC++ K
Sbjct: 263 GVKPNVYIYTIYIRDLCRENK 283


>gi|255660796|gb|ACU25567.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 418

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 139/269 (51%), Gaps = 13/269 (4%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD- 135
           P  + F N++       G  RL   A  +FD ++ ++++ +V  FNTL+N  +  G LD 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDE 189

Query: 136 --RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
             R+K   Q+    V PD  +Y++LI+G     +++DA  +FDEM+ + L P  VTF TL
Sbjct: 190 GFRLKNAMQV--SGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTL 247

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G C   RVD A+++ + ++   ++ PD   + +LI GLC  G+L  A  + +EM+   
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG 306

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           +  D   Y++LI    K G         K M +   + + V Y ALISG C+E     A 
Sbjct: 307 LXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDG 342
            +L EM + G K    +Y +I+   CK G
Sbjct: 367 KMLREMLNVGLKPEIGTYTMIINEFCKKG 395



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 126/228 (55%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++  +  G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E ++D+A  L ++++    + P+G  F +LI G C 
Sbjct: 195 NAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLD-KGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G  P+ +T
Sbjct: 254 NGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGR 361



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 104/198 (52%), Gaps = 2/198 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           ++ A  +FDEM    +      F TL++     G++D   E++ Q++ + +SPD  +YN 
Sbjct: 222 MDDANXLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 281

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G      L+ A  + DEM+ + L P  +T+ TLI G C E  ++ A + ++ +++  
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKE- 340

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N++ D   + +LI GLC  G    A  +  EM+   ++ + G Y+ +I+   K G     
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINEFCKKGDVWTG 400

Query: 278 PAILKEMKERGCKPNSVT 295
             +LKEM+  G  P+ VT
Sbjct: 401 SKLLKEMQRDGYMPSVVT 418



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE +          ++ L+ +  K G      ++   + +   +P+ V++N L+
Sbjct: 119 LVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ K  D +  F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESK 221


>gi|255660876|gb|ACU25607.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 484

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 167/325 (51%), Gaps = 15/325 (4%)

Query: 31  NPNDTEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVP 81
           + ++T  H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +  
Sbjct: 20  HSSNTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEW 78

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
            E ++  +I  YG+  +++ +++MF +M    V+ T+K +N L    L  G+    K  F
Sbjct: 79  DEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYF 138

Query: 142 -QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
            +++ + + P   ++N++I G  +S ++E A + F++M  R + P +VT+ T+I G    
Sbjct: 139 NKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRV 198

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            +++EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  
Sbjct: 199 KKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGSGIKPNAIT 257

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDE 318
           YS+L+  L  A + +E   ILKEM ++   P  NS+ +  LIS  CK  + +AA  +L  
Sbjct: 258 YSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSI-FMRLISSHCKSGNLDAAADVLKA 316

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M           Y +++   CK G+
Sbjct: 317 MIRLSVPTEAGHYGLLIEKFCKAGQ 341



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 130/263 (49%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F++M S  +   V  +NT++N      K++  ++ F  M+ + 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   +++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGSGIKPNAITYSTLLPGLCNAEKMSEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + +++M  Y    D  +F  LI   C  G L  A  V + M+R  +  +AG Y  LI  
Sbjct: 276 VILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGLLIEK 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             KAG+ ++   +L ++ E+    +P S        YN +I   C       A T++ ++
Sbjct: 336 FCKAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPNAYNPMIEYLCNNGQASKAETLVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +P + N ++ G  ++G
Sbjct: 396 MKLGVQ-DPTALNTLIRGHSQEG 417



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 125/287 (43%), Gaps = 49/287 (17%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + +  +I  Y R + +E A + F EM   N++ TV  + TL+   ++  ++D   
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT-------LVT- 189
            L + M+   + P+A +Y+ L+ G   + ++ +A  +  EM+ + L PT       L++ 
Sbjct: 241 RLVEEMKGSGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300

Query: 190 ----------------------------FGTLIYGLCLELRVDEALKL------KEDIMR 215
                                       +G LI   C   + D+A+KL      K+ I+R
Sbjct: 301 HCKSGNLDAAADVLKAMIRLSVPTEAGHYGLLIEKFCKAGQYDKAVKLLDKLIEKDIILR 360

Query: 216 ---VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
                +++P+   +  +I+ LC  G+ S A  +  ++++  ++ D    ++LI    + G
Sbjct: 361 PQSTLHLEPNA--YNPMIEYLCNNGQASKAETLVRQLMKLGVQ-DPTALNTLIRGHSQEG 417

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             +    +LK M  R        YN+L+  + K+ +   A   LD M
Sbjct: 418 SPDSAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSM 464


>gi|449523852|ref|XP_004168937.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Cucumis sativus]
          Length = 683

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 147/297 (49%), Gaps = 2/297 (0%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+   D  +  + R+   +E ++++ ++     + P  + + N++  + ++  +  AL +
Sbjct: 219 NVFILDAFVNNMKRSGRMEEAEELVAKMASGG-LKPDLVNYTNLMDGFLKSGKVSSALNL 277

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
             EM+S NV   +  FN L+N     GK D       + E  +SPD  +YN +++G    
Sbjct: 278 AQEMTSKNVVFDIVTFNVLINCLFKLGKSDTESIYSAMREMGLSPDLATYNTMLNGNFKK 337

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
                A ++++EM  R+L P  +T   +I GLC   R++ A+ + ++ M +  + P    
Sbjct: 338 GNWTSALELWNEMKSRKLIPNAITCNIMINGLCEAGRMENAIDILKE-MVLMGLYPTSTT 396

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           +  L+            L   E +V  ++++D  +Y+ LIS L K G   +  A+LK+M+
Sbjct: 397 YRILLNISSKSRRADTILQTHELLVNMQLKVDKDVYNILISNLCKLGMTRKATAVLKDME 456

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ERG   ++ TYNALI G+C     + AF     M  +    +  +YN++LGGL K G
Sbjct: 457 ERGIIADTTTYNALIHGYCISSHLKRAFMTYSTMLSERVSPDIETYNLLLGGLSKAG 513



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 147/300 (49%), Gaps = 4/300 (1%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           ++++   ++I  L ++    E + +   L +   +VP  I +  +I    +   +  A  
Sbjct: 78  FDVIACTVLIDGLFKSGQIKEAEYLFCNL-YQLNLVPNYITYSALIDSRCKLGDINGAES 136

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCV 163
              EM   +    V  +++L+N  +  G L D  K L +++ K   P+ C+Y IL+ G  
Sbjct: 137 ALHEMEEKDCVPNVITYSSLINGYVKQGLLHDAFKVLRKMVHKNAMPNICTYAILLDGSF 196

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            +   + A  ++ +M +  L+  +      +  +    R++EA +L    M    +KPD 
Sbjct: 197 KAGWQDIALDLYSKMKQGGLKDNVFILDAFVNNMKRSGRMEEAEELVAK-MASGGLKPDL 255

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +L+ G    G++S AL + +EM    +  D   ++ LI+ LFK G K++  +I   
Sbjct: 256 VNYTNLMDGFLKSGKVSSALNLAQEMTSKNVVFDIVTFNVLINCLFKLG-KSDTESIYSA 314

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M+E G  P+  TYN +++G  K+ ++ +A  + +EM  +    N I+ N+++ GLC+ G+
Sbjct: 315 MREMGLSPDLATYNTMLNGNFKKGNWTSALELWNEMKSRKLIPNAITCNIMINGLCEAGR 374



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 3/166 (1%)

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEA-LKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
           MV   + P +VTFG+++YGLC   ++ E  L L+E  M    +  +   +  L+  L   
Sbjct: 1   MVGSGIFPDVVTFGSILYGLCKHGKLSEGKLLLRE--MGKMGMNLNNVSYTILLDALFKA 58

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           G+++ AL     M+      D    + LI  LFK+G+  E   +   + +    PN +TY
Sbjct: 59  GKVAEALMTLACMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCNLYQLNLVPNYITY 118

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +ALI   CK  D   A + L EM +K C  N I+Y+ ++ G  K G
Sbjct: 119 SALIDSRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQG 164



 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M   G  P+ VT+ +++ G CK         +L EMG  G   N +SY ++L  L K GK
Sbjct: 1   MVGSGIFPDVVTFGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVSYTILLDALFKAGK 60



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 45/95 (47%)

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           MV   I  D   + S++  L K G+ +E   +L+EM + G   N+V+Y  L+    K   
Sbjct: 1   MVGSGIFPDVVTFGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVSYTILLDALFKAGK 60

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              A   L  M  +G   + I+  V++ GL K G+
Sbjct: 61  VAEALMTLACMIVRGNNFDVIACTVLIDGLFKSGQ 95


>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
          Length = 1098

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 141/286 (49%), Gaps = 9/286 (3%)

Query: 46  NLLHYDLIIT---KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           NL  Y+++I    KLGR     E   ILH++     + P    + +++  Y +  L+ +A
Sbjct: 383 NLFVYNIMINGYCKLGR---MVEAHNILHEMT-GVGVRPDTYSYNSLVDGYCKKGLMNKA 438

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIHG 161
            + ++ M       T   +N LL    + G +D  ++  F +++K ++P+  S + L+ G
Sbjct: 439 FETYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALRLWFLMLKKGIAPNEISCSTLLDG 498

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              S + E A  ++ E + R L     TF T+I GLC   R+ EA +L  D M+ +   P
Sbjct: 499 FFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEAEELV-DKMKQWRCPP 557

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +L  G C +G++  A  +  E+           ++SLI+  F A +  +   IL
Sbjct: 558 DIITYRTLFSGYCKIGDMDRASRILNELENLGFAPTIEFFNSLITGHFIAKQHGKVNDIL 617

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
            EM  RG  PN+V Y ALI+G+CKE D   A+ +  EM +KG   N
Sbjct: 618 FEMSNRGLSPNTVAYGALIAGWCKEGDLHTAYNLYLEMIEKGLVPN 663



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 133/286 (46%), Gaps = 36/286 (12%)

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY------ 147
             A  L+ ALQ+FDEM +   +++++  N++LN     G L     +F+ M++       
Sbjct: 184 ANAGQLDGALQVFDEMRTLGCRLSMRSCNSILNRLAQTGDLGATVAVFEQMQRAGALPDK 243

Query: 148 ------------------------------VSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
                                         V  +  +Y+ +++G     +  DA ++ D 
Sbjct: 244 FTVAIMAKAYCKVKGVVHALEFVEEMTKMGVEVNLVAYHAVMNGYCEVGQTNDARRMLDS 303

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           +  R   P +VT+  L+ G C E  ++EA  + ++I +   +  D  VF ++I G C +G
Sbjct: 304 LPGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVINGYCQMG 363

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
            +  A  +  EMV  +++++  +Y+ +I+   K GR  E   IL EM   G +P++ +YN
Sbjct: 364 RMEDAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYN 423

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +L+ G+CK+     AF   + M   G  A  ++YN +L G C  G 
Sbjct: 424 SLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGS 469



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 151/344 (43%), Gaps = 45/344 (13%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           P + F  N++ Y L++      K  +E + ++ +++ + ++V  E +F  VI  Y +   
Sbjct: 305 PGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVINGYCQMGR 364

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----VSPDACS 154
           +E A ++ +EM    +Q+ +  +N ++N      KL RM E   I+ +     V PD  S
Sbjct: 365 MEDAARLLNEMVDSRLQVNLFVYNIMINGYC---KLGRMVEAHNILHEMTGVGVRPDTYS 421

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL----- 209
           YN L+ G      +  A++ ++ M++     T +T+  L+ G C    +D+AL+L     
Sbjct: 422 YNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALRLWFLML 481

Query: 210 -------------------------------KEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
                                          KE + R   +  +   F ++I GLC +  
Sbjct: 482 KKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLAR--GLAKNTTTFNTVINGLCKIER 539

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           +  A  + ++M + +   D   Y +L S   K G  +    IL E++  G  P    +N+
Sbjct: 540 MPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELENLGFAPTIEFFNS 599

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           LI+G    +       IL EM ++G   N ++Y  ++ G CK+G
Sbjct: 600 LITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGALIAGWCKEG 643



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 121/275 (44%), Gaps = 14/275 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL-LERALQ 104
           NL     +++   R   FDE   +L  L   T ++P               RL + +   
Sbjct: 663 NLFICSSLVSCFYRKGKFDEANLVLQNLV-GTDMIPD----------ISAPRLEIGKVAN 711

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCV 163
             D ++  N       +N ++      G+++  K L   + +K    D  +Y+ LIHGC 
Sbjct: 712 FIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCS 771

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            S  ++ A+ + D M+   L P +VT+ +LIYGLC    +  A+ L + +     + P+ 
Sbjct: 772 ASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLW-TKGISPNA 830

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +LI   C  G ++ A  +K+ M+ + I      YS LI+ L   G   E   +L +
Sbjct: 831 ITYNTLIDKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQ 890

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
           M E    PN VTY  LI G+ + E  +     LD+
Sbjct: 891 MIENNVDPNYVTYWTLIQGYVRCESVDVPIMPLDQ 925



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/359 (20%), Positives = 155/359 (43%), Gaps = 64/359 (17%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   ++ +I  L + +   E ++++ ++K   R  P  I +  +   Y +   ++RA ++
Sbjct: 523 NTTTFNTVINGLCKIERMPEAEELVDKMKQ-WRCPPDIITYRTLFSGYCKIGDMDRASRI 581

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSY--------- 155
            +E+ +     T++FFN+L+       +  ++ + LF++  + +SP+  +Y         
Sbjct: 582 LNELENLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGALIAGWCK 641

Query: 156 ---------------------NILIHGCVVS-----RRLEDAWKVFDEMVKRRLQPTL-- 187
                                N+ I   +VS      + ++A  V   +V   + P +  
Sbjct: 642 EGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGTDMIPDISA 701

Query: 188 ------------------------VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
                                   + +  +I+GLC   R+++A  L  D ++      D 
Sbjct: 702 PRLEIGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLAD-LKDKGFVADN 760

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             ++SLI G  A G + +A  +++ M+   +  +   Y+SLI  L K+G  +   ++ K+
Sbjct: 761 FTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKK 820

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +  +G  PN++TYN LI   CK+     AF +   M ++G      +Y++++ GLC  G
Sbjct: 821 LWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQG 879



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 1/186 (0%)

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           +NI+I G     R+EDA  +  ++  +       T+ +LI+G      VD A  L++ ++
Sbjct: 728 WNIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTML 787

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
            V  + P+   + SLI GLC  GELS A+ + +++    I  +A  Y++LI    K G  
Sbjct: 788 SV-GLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYI 846

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            E   + + M E G  P   TY+ LI+G C +   E A  +LD+M +     N ++Y  +
Sbjct: 847 TEAFKLKQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTL 906

Query: 335 LGGLCK 340
           + G  +
Sbjct: 907 IQGYVR 912



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 57/118 (48%)

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F  L++ L   G+L  AL V +EM      +     +S+++ L + G      A+ ++M+
Sbjct: 176 FDLLLRALANAGQLDGALQVFDEMRTLGCRLSMRSCNSILNRLAQTGDLGATVAVFEQMQ 235

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             G  P+  T   +   +CK +    A   ++EM   G + N ++Y+ ++ G C+ G+
Sbjct: 236 RAGALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTKMGVEVNLVAYHAVMNGYCEVGQ 293


>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 418

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 130/244 (53%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y +   L+   ++ + M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++  + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G L  A   ++ M+++ I +D  
Sbjct: 289 KGDLKQAQDLTDE-MSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP   TY  +I+ FCK+ D      +L EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407

Query: 320 GDKG 323
              G
Sbjct: 408 QRDG 411



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/267 (32%), Positives = 135/267 (50%), Gaps = 9/267 (3%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ + ++ +V  FNTL+N  +  G LD 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M+   V PD  +Y++LI+G     +++DA ++FDEM+   L P  VTF TLI 
Sbjct: 190 GFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   RVD A+++ + ++   ++ PD   + +LI GLC  G+L  A  + +EM    ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLK 308

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI    K G         K M +   + + V Y ALISG C+E     A  +
Sbjct: 309 PDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
           L EM   G K    +Y +I+   CK G
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 126/228 (55%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++  +  G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E ++D+A +L ++++    + P+G  F +LI G C 
Sbjct: 195 NXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD-NGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   +  EM  +G KP+ +T
Sbjct: 254 NGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE   E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGR 361



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 2/198 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           ++ A ++FDEM    +      F TL++     G++D   E++ Q++ + +SPD  +YN 
Sbjct: 222 MDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 281

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G      L+ A  + DEM  + L+P  +T+ TLI G C E  ++ A + ++ +++  
Sbjct: 282 LIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKE- 340

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N++ D   + +LI GLC  G    A  +  EM+   ++ + G Y+ +I+   K G     
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400

Query: 278 PAILKEMKERGCKPNSVT 295
             +LKEM+  G  P+ VT
Sbjct: 401 SKLLKEMQRDGYVPSVVT 418



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 56/115 (48%)

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +J+ L  +    L  G  EE +          ++ L+ +  K G      ++   + + G
Sbjct: 107 VJEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWG 166

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +P+ V++N L++G+ K  D +  F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKESK 221


>gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 533

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 174/375 (46%), Gaps = 48/375 (12%)

Query: 7   RLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEM 66
           RL  +   Q++  LALQ+F          ++HP   F +N   Y  I+ KL RA+ FD +
Sbjct: 49  RLVSMITQQQNIDLALQIFLYAG------KSHP--GFTHNYDTYHSILFKLSRARAFDPV 100

Query: 67  QQILHQLKHD-TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125
           + ++  L++    I   E +F +++  YG A   E ++++F  +  F V+ +V+  NTLL
Sbjct: 101 ESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLL 160

Query: 126 NPKLTCGKLDRMKELFQIMEKY--VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
           N  +   + D +  +F+  ++   ++P+  + N+L+        +E A+KV DE+    L
Sbjct: 161 NVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPAMGL 220

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P LVT+ T++ G      ++ A ++ E+++      PD   +  L+ G C +G  S A 
Sbjct: 221 VPNLVTYTTILGGYVARGDMESAKRVLEEMLD-RGWYPDAITYTVLMDGYCKLGRFSEAA 279

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG--------------- 288
            V ++M +++IE +   Y  +I AL K  +  E   +  EM +R                
Sbjct: 280 TVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLDRSFMPDSSLCCKVIDAL 339

Query: 289 --------------------CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
                               C P++   + LI   CKE     A  + DE  DKG   + 
Sbjct: 340 CEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVSEARKLFDEF-DKGSIPSL 398

Query: 329 ISYNVILGGLCKDGK 343
           ++YN ++ G+C+ G+
Sbjct: 399 LTYNTLIAGMCEKGE 413



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 146/312 (46%), Gaps = 7/312 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           N  E+  + P   N+   +L++  L +    +   ++L ++     +VP  + +  ++G 
Sbjct: 178 NSKESFGITP---NIFTCNLLVKALCKKNDIESAYKVLDEIPA-MGLVPNLVTYTTILGG 233

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPD 151
           Y     +E A ++ +EM           +  L++     G+      +   MEK  + P+
Sbjct: 234 YVARGDMESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPN 293

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +Y ++I      ++  +A  +FDEM+ R   P       +I  LC + +VDEA  L  
Sbjct: 294 EVTYGVMIRALCKEKKSGEARNMFDEMLDRSFMPDSSLCCKVIDALCEDHKVDEACGLWR 353

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            +++  N  PD  + ++LI  LC  G +S A  + +E  +  I      Y++LI+ + + 
Sbjct: 354 KMLK-NNCMPDNALLSTLIHWLCKEGRVSEARKLFDEFDKGSIP-SLLTYNTLIAGMCEK 411

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G   E   +  +M ER CKPN+ TYN LI G  K  + +    +L+EM + GC  N  ++
Sbjct: 412 GELTEAGRLWDDMFERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLESGCFPNKTTF 471

Query: 332 NVILGGLCKDGK 343
            ++  GL K GK
Sbjct: 472 LILFEGLQKLGK 483



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 12/169 (7%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           +P   +   +I +  +   +  A ++FDE    ++  ++  +NTL+      G+L     
Sbjct: 361 MPDNALLSTLIHWLCKEGRVSEARKLFDEFDKGSIP-SLLTYNTLIAGMCEKGELTEAGR 419

Query: 140 LFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L+  M E+   P+A +YN+LI G   +  +++  +V +EM++    P   TF  L  GL 
Sbjct: 420 LWDDMFERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLESGCFPNKTTFLILFEGLQ 479

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVF--------ASLIKGLCAVGEL 239
              + ++A+K+    M V N K D + +          L KG+ A+ EL
Sbjct: 480 KLGKEEDAIKIVS--MAVMNGKVDKESWELFLNKFVGELDKGVLALKEL 526


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 133/270 (49%), Gaps = 11/270 (4%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++    R +     L ++ +M SF +       N L+N   +   L+R+   
Sbjct: 8   PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILIN---SFCHLNRLGFA 64

Query: 141 FQIMEKYV----SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           F ++   +     P   ++  LI G  V  ++ +A ++FD+M     QP ++T+GTLI G
Sbjct: 65  FSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLING 124

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC + ++ EAL L  D M    + P+   ++SLI GLC +G    A+ +   M+  KI  
Sbjct: 125 LCKDRQLTEALSLFSD-MLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMP 183

Query: 257 DAGIYSSLISALFKAGR---KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           D   +++L+ AL K G     ++   + +EM ++G  P++VTYN LI G C       A 
Sbjct: 184 DQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAI 243

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +  EM   G   + ++Y ++   LCK+ +
Sbjct: 244 ALFHEMVVYGQIPDLVTYRILFDYLCKNHR 273



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 5/245 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIH 160
           ALQ+FD+M+    Q  V  + TL+N      +L     LF  ++ K +SP+  +Y+ LIH
Sbjct: 99  ALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIH 158

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV---DEALKLKEDIMRVY 217
           G  +    ++A ++F  M+ R++ P  +TF TL+  LC E  +   D+A+ L E+ M   
Sbjct: 159 GLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEE-MSQQ 217

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + PD   + +LI GLC VG L  A+ +  EMV      D   Y  L   L K  R  E 
Sbjct: 218 GLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEA 277

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +LK ++     P+   Y+ ++ G C+  + EAA  +  ++  KG   +  +Y +++ G
Sbjct: 278 MVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMING 337

Query: 338 LCKDG 342
           LC+ G
Sbjct: 338 LCQQG 342



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 116/256 (45%), Gaps = 6/256 (2%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ ++L Y  +I  L + +   E   +   +     I P    + ++I         + A
Sbjct: 111 FQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKG-ISPNNFTYSSLIHGLCILGHWKEA 169

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK---LDRMKELFQIM-EKYVSPDACSYNIL 158
           +++F  M    +      FNTL++     G    +D+   LF+ M ++ + PD  +YN L
Sbjct: 170 IRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTL 229

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           IHG     RL DA  +F EMV     P LVT+  L   LC   R+ EA+ L + ++   N
Sbjct: 230 IHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLK-VIEGTN 288

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD  +++ ++ G+C  GEL  A  +  ++    +  D   Y+ +I+ L + G   E  
Sbjct: 289 LDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEAS 348

Query: 279 AILKEMKERGCKPNSV 294
            +  EM E   +  S 
Sbjct: 349 KLFGEMDENDIESYST 364


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 127/248 (51%), Gaps = 6/248 (2%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
           L RA ++F EM S+ ++  +  + T++   +  G+ +   ++  +M ++ +SPD   YN 
Sbjct: 458 LTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNT 517

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I G   + ++E+      EM+ + L+P + T+G  I+G C   R  E    +   + + 
Sbjct: 518 VIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYC---RAGEMQAAERSFIEML 574

Query: 218 N--VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
           +  + P+  +   LI G C  G  + A      M+   +  D   +S LI  L K G+  
Sbjct: 575 DSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQ 634

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E   +  E+ ++G  P+  TY +LIS  CKE D +AAF + D+M  KG   N ++YN ++
Sbjct: 635 EAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALI 694

Query: 336 GGLCKDGK 343
            GLCK G+
Sbjct: 695 NGLCKLGE 702



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 146/302 (48%), Gaps = 9/302 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ Y ++I  L RA   DE  ++   +  +  ++P   I+  +I  + R +       M
Sbjct: 266 NLVTYSVVIAGLCRAGDVDEALELKRSMA-NKGLLPDNYIYATLIDGFCRQKRSTEGKSM 324

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME----KYVSPDACSYNILIHG 161
            DEM +  ++     +  L+N  +   K   +   FQ+ E    + +  +  +Y  LIHG
Sbjct: 325 LDEMYTMGLKPDHVAYTALINGFV---KQSDIGGAFQVKEEMFARKIKLNTFTYYALIHG 381

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 LE A  +F EM    ++P + T+  LI G      +++A +L  +I +  N+  
Sbjct: 382 LCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKK-ENLTA 440

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +  +  +++ GLC  G+L+ A  + +EM+   ++ +  IY++++  L K GR  E   IL
Sbjct: 441 NAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKIL 500

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             MK++G  P+   YN +I GFCK    E   + L EM  KG K N  +Y   + G C+ 
Sbjct: 501 GVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRA 560

Query: 342 GK 343
           G+
Sbjct: 561 GE 562



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 110/226 (48%), Gaps = 2/226 (0%)

Query: 118 VKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFD 176
           V  +  L+N     GK++  K  LF + EK   P+  +Y+++I G   +  +++A ++  
Sbjct: 232 VYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKR 291

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
            M  + L P    + TLI G C + R  E  K   D M    +KPD   + +LI G    
Sbjct: 292 SMANKGLLPDNYIYATLIDGFCRQKRSTEG-KSMLDEMYTMGLKPDHVAYTALINGFVKQ 350

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
            ++  A  VKEEM   KI+++   Y +LI  L K G   +   +  EM   G KP+  TY
Sbjct: 351 SDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTY 410

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           N LI G+ K ++ E A+ +L E+  +   AN      I+ GLC  G
Sbjct: 411 NCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCG 456



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 141/304 (46%), Gaps = 6/304 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP   N++ Y  I+  L +   F+E  +IL  +K D  + P    +  VI  + +A  +
Sbjct: 473 LKP---NIVIYTTIVKGLVKEGRFEEAIKILGVMK-DQGLSPDVFCYNTVIIGFCKAGKM 528

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNIL 158
           E       EM +  ++  V  +   ++     G++   +  F ++++  ++P+      L
Sbjct: 529 EEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDL 588

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G         A+  F  M+ + + P + T   LI+GL    ++ EA+ +  +++    
Sbjct: 589 IDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLD-KG 647

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   + SLI  LC  G+L  A  + ++M +  I  +   Y++LI+ L K G   +  
Sbjct: 648 LVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKAR 707

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +   + E+G   NSVTY+ +I+G+CK  +   AF +   M   G   +   Y  ++ G 
Sbjct: 708 ELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGC 767

Query: 339 CKDG 342
           CK G
Sbjct: 768 CKAG 771



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 128/277 (46%), Gaps = 21/277 (7%)

Query: 83  EIIFCNVIGFYGRA---------------RLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127
            +I CN  G +G A               ++L+  ++ + E++  +   +V  F  L++ 
Sbjct: 114 SLILCNS-GLFGNAANVLERMIDTRNPHVKILDSIIKCYKEINGSSSSSSVVVFEILIDI 172

Query: 128 KLTCGKLDRMKELF--QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
               G L+    +F      +++   AC  N L    +   R+E  WKV+  M+   + P
Sbjct: 173 YRKKGFLNEAVSVFLGAKTNEFIVGLACC-NSLSKDLLKGNRVELFWKVYKGMLGA-IVP 230

Query: 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
            + T+  LI   C   +V+E   +  D M      P+   ++ +I GLC  G++  AL +
Sbjct: 231 DVYTYTNLINAYCRVGKVEEGKHVLFD-MEEKGCIPNLVTYSVVIAGLCRAGDVDEALEL 289

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
           K  M    +  D  IY++LI    +  R  E  ++L EM   G KP+ V Y ALI+GF K
Sbjct: 290 KRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVK 349

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + D   AF + +EM  +  K N  +Y  ++ GLCK G
Sbjct: 350 QSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIG 386



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 139/294 (47%), Gaps = 4/294 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           + ++I  L +     E   +  +L  D  +VP    + ++I    +   L+ A ++ D+M
Sbjct: 620 HSVLIHGLSKNGKLQEAMGVFSELL-DKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDM 678

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRL 168
               +   +  +N L+N     G++ + +ELF  I EK ++ ++ +Y+ +I G   S  L
Sbjct: 679 CKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANL 738

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A+++F  M    + P    +  LI G C     ++AL L   +  V         F +
Sbjct: 739 TEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLF--LGMVEEGIASTPAFNA 796

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G   +G+L  A  + E+MV + I  +   Y+ LI      G   E   +  EM++R 
Sbjct: 797 LIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRN 856

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             PN +TY +L+ G+ +       F++ DEM  +G K + ++++V++    K+G
Sbjct: 857 VMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEG 910



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 118/246 (47%), Gaps = 3/246 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
           L+ A+ +F E+    +   V  + +L++     G L    EL   M +K ++P+  +YN 
Sbjct: 633 LQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNA 692

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G      +  A ++FD + ++ L    VT+ T+I G C    + EA +L    M++ 
Sbjct: 693 LINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHG-MKLV 751

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            V PD  V+ +LI G C  G    AL +   MV + I      +++LI   FK G+  E 
Sbjct: 752 GVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPA-FNALIDGFFKLGKLIEA 810

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++++M +    PN VTY  LI   C   + + A  +  EM  +    N ++Y  +L G
Sbjct: 811 YQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHG 870

Query: 338 LCKDGK 343
             + G+
Sbjct: 871 YNRIGR 876



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 121/280 (43%), Gaps = 2/280 (0%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ +I  L +     + +++   +  +  +    + +  +I  Y ++  L  A Q+
Sbjct: 686 NIVTYNALINGLCKLGEIAKARELFDGIP-EKGLARNSVTYSTIIAGYCKSANLTEAFQL 744

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
           F  M    V      +  L++     G  ++   LF  M +       ++N LI G    
Sbjct: 745 FHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALIDGFFKL 804

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            +L +A+++ ++MV   + P  VT+  LI   C    + EA +L  + M+  NV P+   
Sbjct: 805 GKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFME-MQKRNVMPNVLT 863

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + SL+ G   +G  S    + +EMV   I+ D   +S ++ A  K G   +   ++ +M 
Sbjct: 864 YTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDML 923

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
             G       Y  LI   CK  +      +LDE+  +G K
Sbjct: 924 SEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSK 963



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 121/282 (42%), Gaps = 39/282 (13%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           P K    N + Y  II    ++    E  Q+ H +K    + P   ++C +I    +A  
Sbjct: 714 PEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKL-VGVPPDSFVYCALIDGCCKAGN 772

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
            E+AL +F  M    +  T  F N L++     GKL    +L + M + +++P+  +Y I
Sbjct: 773 TEKALSLFLGMVEEGIASTPAF-NALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTI 831

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG--------------------- 196
           LI        +++A ++F EM KR + P ++T+ +L++G                     
Sbjct: 832 LIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARG 891

Query: 197 -----LCLELRVD---------EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
                L   + VD         +ALKL +D++    V     ++  LI  LC    LS  
Sbjct: 892 IKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLS-EGVNVCKNLYTILIDALCKHNNLSEV 950

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           L V +E+ +   ++      +L+    +AGR +E   +L+ M
Sbjct: 951 LKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLESM 992


>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
 gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 138/302 (45%), Gaps = 43/302 (14%)

Query: 84  IIFCN--VIGF--YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           ++ CN  +IG   Y  +  +  A ++FD+M    V + V+ FN L+N     GKL+    
Sbjct: 166 LLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALG 225

Query: 140 LFQIM--EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           + + M  E  V+PD  +YN ++       RL D  ++  +M K  L P  VT+  L+YG 
Sbjct: 226 MLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGY 285

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C    + EA ++ E +M+  NV PD   +  LI GLC  G +   L + + M   K++ D
Sbjct: 286 CKLGSLKEAFQIVE-LMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPD 344

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE---------- 307
              Y++LI   F+ G   E   ++++M+  G K N VT+N  +   CKEE          
Sbjct: 345 VVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVK 404

Query: 308 --------------------------DFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
                                     D   A  ++ EMG KG K N I+ N IL  LCK+
Sbjct: 405 ELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKE 464

Query: 342 GK 343
            K
Sbjct: 465 RK 466



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 148/297 (49%), Gaps = 6/297 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ I+  + +     +++++L  +K +  +VP  + + N++  Y +   L+ A Q+ + M
Sbjct: 243 YNTILKAMSKKGRLSDLKELLLDMKKNG-LVPNRVTYNNLVYGYCKLGSLKEAFQIVELM 301

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
              NV   +  +N L+N     G +    EL   M+   + PD  +YN LI GC      
Sbjct: 302 KQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLS 361

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A K+ ++M    ++   VT    +  LC E + +   +  ++++ ++   PD   + +
Sbjct: 362 LEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHT 421

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LIK    VG+LS AL +  EM +  I+M+    ++++ AL K  + +E   +L    +RG
Sbjct: 422 LIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRG 481

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI--SYNVILGGLCKDGK 343
              + VTY  LI GF +EE  E A  + DEM  K  K  P   ++N ++GGLC  GK
Sbjct: 482 FIVDEVTYGTLIMGFFREEKVEKALEMWDEM--KKVKITPTVSTFNSLIGGLCHHGK 536



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 131/268 (48%), Gaps = 11/268 (4%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  +I  Y +   L  AL+M  EM    ++M     NT+L+      KLD    L
Sbjct: 414 PDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNL 473

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
                K     D  +Y  LI G     ++E A +++DEM K ++ PT+ TF +LI GLC 
Sbjct: 474 LNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCH 533

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             + + A++ K D +    + PD   F S+I G C  G +  A     E ++   + D  
Sbjct: 534 HGKTELAME-KFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNY 592

Query: 260 IYSSLISALFKAGRK----NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
             + L++ L K G      N F  +++E +      ++VTYN +IS FCK++  + A+ +
Sbjct: 593 TCNILLNGLCKEGMTEKALNFFNTLIEERE-----VDTVTYNTMISAFCKDKKLKEAYDL 647

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
           L EM +KG + +  +YN  +  L +DGK
Sbjct: 648 LSEMEEKGLEPDRFTYNSFISLLMEDGK 675



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 108/197 (54%), Gaps = 5/197 (2%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC---LELRVDEA 206
           P    ++I +   +   +   A ++F +M++ +L+P L+T  TL+ GL        +  A
Sbjct: 129 PSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSA 188

Query: 207 LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD-KIEMDAGIYSSLI 265
            ++ +D++++  V  + Q F  L+ G C  G+L  ALG+ E MV + K+  D   Y++++
Sbjct: 189 REVFDDMVKI-GVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTIL 247

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
            A+ K GR ++   +L +MK+ G  PN VTYN L+ G+CK    + AF I++ M      
Sbjct: 248 KAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVL 307

Query: 326 ANPISYNVILGGLCKDG 342
            +  +YN+++ GLC  G
Sbjct: 308 PDLCTYNILINGLCNAG 324



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 117/244 (47%), Gaps = 4/244 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + N +  + I+  L + +  DE   +L+   H    +  E+ +  +I  + R   +E
Sbjct: 445 KGIKMNTITLNTILDALCKERKLDEAHNLLNS-AHKRGFIVDEVTYGTLIMGFFREEKVE 503

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
           +AL+M+DEM    +  TV  FN+L+      GK +   E F ++ E  + PD  ++N +I
Sbjct: 504 KALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSII 563

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G     R+E A++ ++E +K   +P   T   L+ GLC E   ++AL     ++    V
Sbjct: 564 LGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREV 623

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
             D   + ++I   C   +L  A  +  EM    +E D   Y+S IS L + G+ +E   
Sbjct: 624 --DTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDE 681

Query: 280 ILKE 283
           +LK+
Sbjct: 682 LLKK 685



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 149/348 (42%), Gaps = 46/348 (13%)

Query: 34  DTEAHPLKPFR--YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIG 91
           D + + L P R  YN L Y     KLG  K   E  QI+  +K  T ++P    +  +I 
Sbjct: 265 DMKKNGLVPNRVTYNNLVYG--YCKLGSLK---EAFQIVELMKQ-TNVLPDLCTYNILIN 318

Query: 92  FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME------ 145
               A  +   L++ D M S  +Q  V  +NTL++     G     ++L + ME      
Sbjct: 319 GLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKA 378

Query: 146 ---------KYV----------------------SPDACSYNILIHGCVVSRRLEDAWKV 174
                    K++                      SPD  +Y+ LI   +    L  A ++
Sbjct: 379 NQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEM 438

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
             EM ++ ++   +T  T++  LC E ++DEA  L     +   +  D   + +LI G  
Sbjct: 439 MREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFI-VDEVTYGTLIMGFF 497

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
              ++  AL + +EM + KI      ++SLI  L   G+         E+ E G  P+  
Sbjct: 498 REEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDS 557

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           T+N++I G+CKE   E AF   +E      K +  + N++L GLCK+G
Sbjct: 558 TFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEG 605



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 110/222 (49%), Gaps = 4/222 (1%)

Query: 120 FFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV---VSRRLEDAWKVF 175
            F+  L+  L  GK     ++FQ M +  + P+  + N L+ G V    S  +  A +VF
Sbjct: 133 LFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVF 192

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           D+MVK  +   + TF  L+ G CLE ++++AL + E ++  + V PD   + +++K +  
Sbjct: 193 DDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSK 252

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G LS    +  +M ++ +  +   Y++L+    K G   E   I++ MK+    P+  T
Sbjct: 253 KGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCT 312

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           YN LI+G C          ++D M     + + ++YN ++ G
Sbjct: 313 YNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDG 354



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 22/222 (9%)

Query: 55  TKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNV 114
           T+L   K FDE+ +        + ++P +  F ++I  Y +   +E+A + ++E    + 
Sbjct: 537 TELAMEK-FDELAE--------SGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSF 587

Query: 115 QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKV 174
           +      N LLN     G  ++    F  + +    D  +YN +I      ++L++A+ +
Sbjct: 588 KPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREVDTVTYNTMISAFCKDKKLKEAYDL 647

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
             EM ++ L+P   T+ + I  L +E   D  L   +++++ ++ K     F S+ + L 
Sbjct: 648 LSEMEEKGLEPDRFTYNSFI-SLLME---DGKLSETDELLKKFSGK-----FGSMKRDLQ 698

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
              E + A    +E    ++  +A  YS +I  L   GR  E
Sbjct: 699 VETEKNPATSESKE----ELNTEAIAYSDVIDELCSRGRLKE 736



 Score = 37.4 bits (85), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK---EEDFEAAFTI 315
            ++   +SA    G+ +    I ++M     KPN +T N L+ G  +        +A  +
Sbjct: 132 ALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREV 191

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
            D+M   G   N  ++NV++ G C +GK
Sbjct: 192 FDDMVKIGVSLNVQTFNVLVNGYCLEGK 219


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 148/300 (49%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y  II  L +    +E  ++L ++       P    F  V+  + R+  +E+A ++
Sbjct: 9   NVFTYSSIIKSLVKEAKPEESYKVLEEM-MAAGCNPDVFAFNGVMQGFARSNNMEKAREV 67

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVV 164
           +  M     +     ++ L++     GKLD  +K L +++ +  +P   +Y+ L+     
Sbjct: 68  YQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAK 127

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV-DEALKLKEDIMRVYNVKPDG 223
           +RR++ A  +FDEM++    P  + F  LI GLC   +V D + + K+  M  +  +P+ 
Sbjct: 128 ARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQ--MPKHGCQPNV 185

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
            V+  L+ GLC+ G+L  A  +  EM       D   Y++L+ A+ KA R  E   + + 
Sbjct: 186 PVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEA 245

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M+  G  PN +T++ LI G C+  + E A  +   M + GCK N  +Y  ++ GLC+  K
Sbjct: 246 MRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEK 305



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 150/307 (48%), Gaps = 5/307 (1%)

Query: 38  HPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           H  +P   N+  Y++++  L  +   ++   +  ++K  +   P  + +  ++    +AR
Sbjct: 179 HGCQP---NVPVYNVLLHGLCSSGQLEQANTLFAEMKSHS-CSPDVVTYNTLLDAVCKAR 234

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYN 156
            +E   ++F+ M +      V  F+TL++     G+L++  E+F  ++E    P+  +Y 
Sbjct: 235 RVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYT 294

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            LI G   + ++  A ++F++M +  + P  V + +LI G C    +DEA KL  ++   
Sbjct: 295 TLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGG 354

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             ++P    F +LI G C +G+L  A  +  EM    +  D+  Y  LI+ L +A + +E
Sbjct: 355 AGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDE 414

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              + K+M+E+    + V+  + + G CK  + + A+ + +     G   NP ++ ++  
Sbjct: 415 ALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSE 474

Query: 337 GLCKDGK 343
            L K G+
Sbjct: 475 SLIKLGR 481



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 135/286 (47%), Gaps = 7/286 (2%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           + ++H   P   +++ Y+ ++  + +A+  +E  ++   ++     VP  I F  +I   
Sbjct: 210 EMKSHSCSP---DVVTYNTLLDAVCKARRVEEGCKLFEAMR-AAGYVPNVITFSTLIHGL 265

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDA 152
            R   LE+AL++F  M     +     + TL++      K+ + +ELF+ M +  + PDA
Sbjct: 266 CRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDA 325

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKE 211
            +YN LI G      +++A K++ EM     LQPT+VTF TLI G C   ++  A +L  
Sbjct: 326 VAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVA 385

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           + M    +  D   +  LI GL    +L  AL V ++M   K  +D     S +  L K 
Sbjct: 386 E-MGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKT 444

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           G  ++  A+ +  ++ G  PN  T+  L     K    E A  +++
Sbjct: 445 GNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLME 490



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 38/232 (16%)

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE--------------------------- 177
           +K ++ +  +Y+ +I   V   + E+++KV +E                           
Sbjct: 3   DKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNME 62

Query: 178 --------MVKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDIMRVYNVKPDGQVFAS 228
                   MV+   +P  V++  LI+GL    ++DE+LK L E +MR     P  Q ++S
Sbjct: 63  KAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMR--GQTPSMQAYSS 120

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L++ L     +  A  + +EM+R     D  ++  LI  L +AG+  +     K+M + G
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHG 180

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           C+PN   YN L+ G C     E A T+  EM    C  + ++YN +L  +CK
Sbjct: 181 CQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCK 232



 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 60/127 (47%)

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           MR  N+  +   ++S+IK L    +   +  V EEM+      D   ++ ++    ++  
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             +   + + M E G KP++V+Y+ LI G  K    + +  IL EM  +G   +  +Y+ 
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 334 ILGGLCK 340
           ++  L K
Sbjct: 121 LVRALAK 127


>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 418

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 127/228 (55%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++  +  G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E ++D+A +L ++++    + P+G  F +LI G C 
Sbjct: 195 NAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD-NGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + + M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 254 NGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGR 361



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 135/282 (47%), Gaps = 42/282 (14%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ ++++ +V  FNTL+N  +  G LD 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M+   V PD  +Y++LI+G     +++DA ++FDEM+   L P  VTF TLI 
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKE----------------------------------DIMRVYNVKP 221
           G C   RVD A+++ +                                  D M +  +KP
Sbjct: 250 GHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKP 309

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +LI G C  G+L  A   ++ M+++ I +D   Y++LIS L + GR  +   +L
Sbjct: 310 DKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKML 369

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +EM   G KP   TY  +I+ FCK+ D      +L EM   G
Sbjct: 370 REMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 2/198 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
           ++ A ++FDEM    +      F TL++     G++D   E++++M  + +SPD  +YN 
Sbjct: 222 MDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNT 281

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G      L+ A  + DEM  + L+P  +T+ TLI G C E  ++ A + ++ +++  
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKE- 340

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N++ D   + +LI GLC  G    A  +  EM+   ++ + G Y+ +I+   K G     
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400

Query: 278 PAILKEMKERGCKPNSVT 295
             +LKEM+  G  P+ VT
Sbjct: 401 SKLLKEMQRDGYMPSVVT 418



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE +          ++ L+ +  K G      ++   + +   +P+ V++N L+
Sbjct: 119 LVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ K  D +  F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221


>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 418

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/267 (32%), Positives = 135/267 (50%), Gaps = 9/267 (3%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ + ++ +V  FNTL+N  +  G LD 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M+   V PD  +Y++LI+G     ++EDA ++FDEM+   L P  VTF TLI 
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   RVD A+++ + ++   ++ PD   + +LI GLC  G+L  A  + +EM    ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLK 308

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI    K G         K M +   + + V Y ALISG C+E     A  +
Sbjct: 309 PDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
           L EM   G K    +Y +I+   CK G
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 130/239 (54%), Gaps = 2/239 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E   +    ++ FFN L++  +  G++   + +F  + K+ + P   S+N L++G + 
Sbjct: 124 YEESLEYGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIK 183

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L++ +++ + M    +QP + T+  LI GLC E ++++A +L ++++    + P+G 
Sbjct: 184 LGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLN-NGLVPNGV 242

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ + ++M+   +  D   Y++LI  L K G   +   +  EM
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEM 302

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G KP+ +TY  LI G CKE   E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 303 SMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGR 361



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 106/198 (53%), Gaps = 2/198 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           +E A ++FDEM +  +      F TL++     G++D   E++ Q++ + +SPD  +YN 
Sbjct: 222 MEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 281

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G      L+ A  + DEM  + L+P  +T+ TLI G C E  ++ A + ++ +++  
Sbjct: 282 LIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKE- 340

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N++ D   + +LI GLC  G    A  +  EM+   ++ + G Y+ +I+   K G     
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400

Query: 278 PAILKEMKERGCKPNSVT 295
             +LKEM+  G  P+ VT
Sbjct: 401 SKLLKEMQRDGYVPSVVT 418



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 56/115 (48%)

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I+ L  +    L  G  EE +          ++ L+ +  K G      ++   + + G
Sbjct: 107 VIEHLMKLKYFKLVWGFYEESLEYGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWG 166

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +P+ V++N L++G+ K  D +  F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221


>gi|225440005|ref|XP_002276355.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230
           [Vitis vinifera]
          Length = 763

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 171/361 (47%), Gaps = 56/361 (15%)

Query: 38  HPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN 88
           H L+ FR+     L  +D      II  LGRA   +  + IL  +     +   E +F  
Sbjct: 134 HALQFFRWVERAGLFRHDRDTHLKIIEILGRASKLNHARCILLDMPKKG-VEWDEDLFVL 192

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVK--------------------FFNTLLNPK 128
           +I  YG+A +++ ++++F +M    V+ T+K                    +FN +LN  
Sbjct: 193 LIDSYGKAGIVQESVKVFQKMKELGVERTIKSYDALFKVILRRGRYMMAKRYFNAMLNEG 252

Query: 129 L--TCG-------------KLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAW 172
           +  TC              K++     F+ M E+ +SPD  +YN +I+G    +++E+A 
Sbjct: 253 VMPTCHTYNIMIWGFFLSLKVETANRFFEEMKERRISPDVVTYNTMINGYYRIKKMEEAE 312

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
           K F EM  R ++PT++++ T+I G     RVD+ L+L E+ M+ + +KP+   +++L+ G
Sbjct: 313 KFFVEMKGRNIEPTVISYTTMIKGYVSVGRVDDGLRLFEE-MKSFGIKPNAVTYSTLLPG 371

Query: 233 LCAVGELSLALGVKEEMVRDKIE-MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           LC   ++  A  V +EMV   I   D  I+  LI+   KAG+ +    +LK M       
Sbjct: 372 LCDGEKMLEAQNVVKEMVERYIAPKDNSIFMRLITCQCKAGQLDAAADVLKAMIRLSIPT 431

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP--------ISYNVILGGLCKDGK 343
            +  Y  LI  FCK   ++ A  +LD++ +K     P          YN+I+  LC  G+
Sbjct: 432 EAGHYGVLIENFCKSGVYDRAVKLLDKLIEKEIILRPQNSLEMESSGYNLIIEYLCNSGQ 491

Query: 344 C 344
            
Sbjct: 492 T 492



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 129/263 (49%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F+EM    +   V  +NT++N      K++  ++ F  M+ + 
Sbjct: 264 IWGFFLSLKV-ETANRFFEEMKERRISPDVVTYNTMINGYYRIKKMEEAEKFFVEMKGRN 322

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   SY  +I G V   R++D  ++F+EM    ++P  VT+ TL+ GLC   ++ EA 
Sbjct: 323 IEPTVISYTTMIKGYVSVGRVDDGLRLFEEMKSFGIKPNAVTYSTLLPGLCDGEKMLEAQ 382

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + ++++  Y    D  +F  LI   C  G+L  A  V + M+R  I  +AG Y  LI  
Sbjct: 383 NVVKEMVERYIAPKDNSIFMRLITCQCKAGQLDAAADVLKAMIRLSIPTEAGHYGVLIEN 442

Query: 268 LFKAGRKNEFPAILKEMKER--------GCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             K+G  +    +L ++ E+          +  S  YN +I   C       A T+  ++
Sbjct: 443 FCKSGVYDRAVKLLDKLIEKEIILRPQNSLEMESSGYNLIIEYLCNSGQTSKAETLFRQL 502

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
             KG + +PI++N ++ G  K+G
Sbjct: 503 MKKGVQ-DPIAFNNLIRGHSKEG 524



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 159/311 (51%), Gaps = 22/311 (7%)

Query: 45  YNLLHYDLIIT-KLGRA-KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           YN++ +   ++ K+  A + F+EM++         RI P  + +  +I  Y R + +E A
Sbjct: 260 YNIMIWGFFLSLKVETANRFFEEMKE--------RRISPDVVTYNTMINGYYRIKKMEEA 311

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
            + F EM   N++ TV  + T++   ++ G++D    LF+ M+ + + P+A +Y+ L+ G
Sbjct: 312 EKFFVEMKGRNIEPTVISYTTMIKGYVSVGRVDDGLRLFEEMKSFGIKPNAVTYSTLLPG 371

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVT-FGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                ++ +A  V  EMV+R + P   + F  LI   C   ++D A  + + ++R+ ++ 
Sbjct: 372 LCDGEKMLEAQNVVKEMVERYIAPKDNSIFMRLITCQCKAGQLDAAADVLKAMIRL-SIP 430

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMV--------RDKIEMDAGIYSSLISALFKAG 272
            +   +  LI+  C  G    A+ + ++++        ++ +EM++  Y+ +I  L  +G
Sbjct: 431 TEAGHYGVLIENFCKSGVYDRAVKLLDKLIEKEIILRPQNSLEMESSGYNLIIEYLCNSG 490

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           + ++   + +++ ++G + + + +N LI G  KE   E+AF IL  MG +       +Y 
Sbjct: 491 QTSKAETLFRQLMKKGVQ-DPIAFNNLIRGHSKEGAPESAFEILKIMGRREVPREADAYR 549

Query: 333 VILGGLCKDGK 343
           +++    K G+
Sbjct: 550 LLIESFLKKGE 560



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 133/309 (43%), Gaps = 16/309 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE-IIFCNVIGFYGRARLLERALQ 104
           N + Y  ++  L   +   E Q ++ ++  +  I PK+  IF  +I    +A  L+ A  
Sbjct: 361 NAVTYSTLLPGLCDGEKMLEAQNVVKEMV-ERYIAPKDNSIFMRLITCQCKAGQLDAAAD 419

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYV--------SPDACSY 155
           +   M   ++      +  L+      G  DR +K L +++EK +          ++  Y
Sbjct: 420 VLKAMIRLSIPTEAGHYGVLIENFCKSGVYDRAVKLLDKLIEKEIILRPQNSLEMESSGY 479

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N++I     S +   A  +F +++K+ +Q   + F  LI G   E   + A ++ + IM 
Sbjct: 480 NLIIEYLCNSGQTSKAETLFRQLMKKGVQDP-IAFNNLIRGHSKEGAPESAFEILK-IMG 537

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
              V  +   +  LI+     GE + A    + M+ +    D+ ++ S++ +LF+ GR  
Sbjct: 538 RREVPREADAYRLLIESFLKKGEPADAKTALDGMIENGHIPDSSLFRSVMESLFEDGRIQ 597

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
               ++  M E+G K N      ++         E A   +D + + GC+ +   ++ +L
Sbjct: 598 TASRVMNNMVEKGVKENMDLVAKILEALLLRGHVEEALGRIDLLMNNGCEPD---FDGLL 654

Query: 336 GGLCKDGKC 344
             LC  GK 
Sbjct: 655 SVLCAKGKT 663



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 117/271 (43%), Gaps = 8/271 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+LII  L  +    + + +  QL    + V   I F N+I  + +    E A ++   M
Sbjct: 479 YNLIIEYLCNSGQTSKAETLFRQLMK--KGVQDPIAFNNLIRGHSKEGAPESAFEILKIM 536

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGK-LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168
               V      +  L+   L  G+  D    L  ++E    PD+  +  ++       R+
Sbjct: 537 GRREVPREADAYRLLIESFLKKGEPADAKTALDGMIENGHIPDSSLFRSVMESLFEDGRI 596

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A +V + MV++ ++  +     ++  L L   V+EAL  + D++     +PD   F  
Sbjct: 597 QTASRVMNNMVEKGVKENMDLVAKILEALLLRGHVEEALG-RIDLLMNNGCEPD---FDG 652

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+  LCA G+   AL + +  +     +    Y +++ AL  AG+     +IL ++ ++G
Sbjct: 653 LLSVLCAKGKTIAALKLLDFGLERDYNISFSSYENVLDALLTAGKTLNAYSILCKIMQKG 712

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
              +  +   LI    +E + + A  IL  M
Sbjct: 713 GATDWSSCKDLIRSLNEEGNTKQA-DILSRM 742



 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 60/135 (44%)

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
           D AL+    + R    + D      +I+ L    +L+ A  +  +M +  +E D  ++  
Sbjct: 133 DHALQFFRWVERAGLFRHDRDTHLKIIEILGRASKLNHARCILLDMPKKGVEWDEDLFVL 192

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LI +  KAG   E   + ++MKE G +    +Y+AL     +   +  A    + M ++G
Sbjct: 193 LIDSYGKAGIVQESVKVFQKMKELGVERTIKSYDALFKVILRRGRYMMAKRYFNAMLNEG 252

Query: 324 CKANPISYNVILGGL 338
                 +YN+++ G 
Sbjct: 253 VMPTCHTYNIMIWGF 267


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 128/239 (53%), Gaps = 2/239 (0%)

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
           + ++M +  +   V  F+T+++     GK+    E+  +M ++ V PD  +Y  L+ G  
Sbjct: 262 LLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHC 321

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
           +   +++A KVFD MV++   P ++++ TLI G C   ++D+A+ L E++ R   + PD 
Sbjct: 322 LQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWI-PDT 380

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
           + + +L+ GLC VG L  A+ +  EMV      D   YS L+ +L K     E  A+LK 
Sbjct: 381 KTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKA 440

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++     P+   YN +I G C+  + EAA  +   +  KG   +  +YN+++ GLCK G
Sbjct: 441 IEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRG 499



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 131/298 (43%), Gaps = 41/298 (13%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++    + +     L +  +M SF V   V   N L+N   +   L+R+   
Sbjct: 63  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILIN---SFCHLNRVGFA 119

Query: 141 FQIMEKYV----SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           F ++ K +     PD  ++  LI G  V  ++ +A  +FD+M+    QP +VT+GTLI G
Sbjct: 120 FSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLING 179

Query: 197 LCLELRVDEALKL-------------------------KEDIMRVYN---------VKPD 222
           LC       A++L                            +   +N         + PD
Sbjct: 180 LCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPD 239

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + SL+  LC + E      +  +MV  KI  D  I+S+++ AL K G+  E   I+ 
Sbjct: 240 IFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVD 299

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            M +RG +P+ VTY  L+ G C + + + A  + D M  KG   + ISY  ++ G CK
Sbjct: 300 MMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCK 357



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 147/302 (48%), Gaps = 3/302 (0%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ N++ Y  +I  L +        ++L  ++      P  +I+ ++I    + R +  A
Sbjct: 166 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN-CQPDVVIYTSIIDSLCKDRQVTEA 224

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
             +F +M    +   +  + +L++      +   +  L  Q++   + PD   ++ ++  
Sbjct: 225 FNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDA 284

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                ++ +A ++ D M++R ++P +VT+ TL+ G CL+  +DEA+K+  D+M      P
Sbjct: 285 LCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVF-DMMVRKGFAP 343

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +LI G C + ++  A+ + EEM R +   D   Y++L+  L   GR  +  A+ 
Sbjct: 344 DVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALF 403

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM  RG  P+ VTY+ L+   CK    E A  +L  +       +   YN+I+ G+C+ 
Sbjct: 404 HEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRA 463

Query: 342 GK 343
           G+
Sbjct: 464 GE 465



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 113/230 (49%), Gaps = 2/230 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
           ++ A+++FD M        V  + TL+N      K+D+   LF+ M  K   PD  +YN 
Sbjct: 326 MDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNT 385

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L++G     RL+DA  +F EMV R   P LVT+  L+  LC    ++EA+ L + I    
Sbjct: 386 LMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAI-EAS 444

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N+ PD QV+  +I G+C  GEL  A  +   +    +      Y+ +I  L K G  NE 
Sbjct: 445 NLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEA 504

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
             +  EM    C P+  TYN +  GF +  +   A  +L+EM  +G  A+
Sbjct: 505 NKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSAD 554



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 138/297 (46%), Gaps = 3/297 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y  ++  L     +  +  +L+Q+  +++I+P  +IF  V+    +   +  A ++
Sbjct: 239 DIFTYTSLVHALCNLCEWKHVTTLLNQMV-NSKILPDVVIFSTVVDALCKEGKVTEAHEI 297

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            D M    V+  V  + TL++      ++D   ++F +M  K  +PD  SY  LI+G   
Sbjct: 298 VDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCK 357

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +++ A  +F+EM ++   P   T+ TL+YGLC   R+ +A+ L  + M      PD  
Sbjct: 358 IHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHE-MVARGQMPDLV 416

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++ L+  LC    L  A+ + + +    +  D  +Y+ +I  + +AG       +   +
Sbjct: 417 TYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNL 476

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             +G  P+  TYN +I G CK      A  +  EM    C  +  +YN I  G  ++
Sbjct: 477 SSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQN 533



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 1/174 (0%)

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           L+DA   F+ ++     P++V F  L+  +         L L    M  + V P+     
Sbjct: 46  LDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQ-MDSFGVPPNVYTLN 104

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            LI   C +  +  A  V  ++++   + D   +++LI  L   G+  E   +  +M + 
Sbjct: 105 ILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDE 164

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           G +PN VTY  LI+G CK  +  AA  +L  M    C+ + + Y  I+  LCKD
Sbjct: 165 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKD 218



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 2/161 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           L+ A+ +F EM +      +  ++ LL+       L+    L + +E   ++PD   YNI
Sbjct: 396 LQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNI 455

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I G   +  LE A  +F  +  + L P++ T+  +I+GLC    ++EA KL  + M   
Sbjct: 456 IIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFME-MDGN 514

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
           +  PDG  + ++ +G     E   A+ + EEM+      D+
Sbjct: 515 DCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADS 555



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 4/119 (3%)

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS--SLISALFKAGRKNEFPAILKE 283
           FA L+  +  +   S  L +  +M  D   +   +Y+   LI++     R     ++L +
Sbjct: 68  FAKLLTSIAKMKHYSTVLSLSTQM--DSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAK 125

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + + G +P+  T+  LI G C E     A  + D+M D+G + N ++Y  ++ GLCK G
Sbjct: 126 ILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVG 184



 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 44/83 (53%)

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
           ++ L++++ K    +   ++  +M   G  PN  T N LI+ FC       AF++L ++ 
Sbjct: 68  FAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKIL 127

Query: 321 DKGCKANPISYNVILGGLCKDGK 343
             G + +P ++  ++ GLC +GK
Sbjct: 128 KLGHQPDPTTFTTLIRGLCVEGK 150


>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 418

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 134/256 (52%), Gaps = 2/256 (0%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY- 147
           V+  + + +  +     + E+       ++ FFN L++     G++   + +F  + K+ 
Sbjct: 107 VLEHFMKLKYFKSVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWG 166

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   S+N L++G +    L++ +++   M    +QP + T+  LI GLC E ++++A 
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDAN 226

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           +L ++++    + P+G  F +LI G C  G + LA+   +EM+R     D   Y++LI  
Sbjct: 227 ELFDEMIG-NGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYG 285

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L K G   +   ++ EM  +G KP+ +TY  LI G CKE D E AF     M  +  + +
Sbjct: 286 LCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLD 345

Query: 328 PISYNVILGGLCKDGK 343
            ++Y  ++ GLC++G+
Sbjct: 346 DVAYTALISGLCREGQ 361



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 137/283 (48%), Gaps = 44/283 (15%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FDE++ + ++ +V  FNTL+N  +  G LD 
Sbjct: 133 PASLYFFNILMHRFCKEGEMRL---AQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMV---------------- 179
              L   M    + PD  +Y++LI+G     ++ DA ++FDEM+                
Sbjct: 190 GFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLID 249

Query: 180 -------------------KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                              ++   P L+T+ TLIYGLC E  + +A  L ++ M +  +K
Sbjct: 250 GHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDE-MSMKGLK 308

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   + +LI G C  G+L  A   K+ M+++ I +D   Y++LIS L + G+      +
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKM 368

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           L+EM   G KP++ TY  +I+ FCK+ D +    +L EM   G
Sbjct: 369 LREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDG 411



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 109/222 (49%), Gaps = 2/222 (0%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           H + I P    +  +I    +   +  A ++FDEM    +      F TL++     G +
Sbjct: 198 HGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSI 257

Query: 135 DRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           D   E + +++ +  SPD  +YN LI+G      L+ A  + DEM  + L+P  +T+ TL
Sbjct: 258 DLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTL 317

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G C E  ++ A K K+ +++  N++ D   + +LI GLC  G+   A  +  EM+   
Sbjct: 318 IDGSCKEGDLETAFKYKKRMIKE-NIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVG 376

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
           ++ D G Y+ +I+   K G       +LKEM+  G  P  VT
Sbjct: 377 LKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGHVPCVVT 418


>gi|449468277|ref|XP_004151848.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g14770, mitochondrial-like, partial [Cucumis
           sativus]
          Length = 697

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 147/297 (49%), Gaps = 2/297 (0%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+   D  +  + R+   +E ++++ ++     + P  + + N++  + ++  +  AL +
Sbjct: 233 NVFILDAFVNNMKRSGRMEEAEELVAKMASGG-LKPDLVNYTNLMDGFLKSGKVSSALNL 291

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
             EM+S NV   +  FN L+N     GK D       + E  +SPD  +YN +++G    
Sbjct: 292 AQEMTSKNVVFDIVTFNVLINCLFKLGKSDTESIYSAMREMGLSPDLATYNTMLNGNFKK 351

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
                A ++++EM  R+L P  +T   +I GLC   R++ A+ + ++ M +  + P    
Sbjct: 352 GNWTSALELWNEMKSRKLIPNAITCNIMINGLCEAGRMENAIDILKE-MVLMGLYPTSTT 410

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           +  L+            L   E +V  ++++D  +Y+ LIS L K G   +  A+LK+M+
Sbjct: 411 YRILLNISSKSRRADTILQTHELLVNMQLKVDKDVYNILISNLCKLGMTRKATAVLKDME 470

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ERG   ++ TYNALI G+C     + AF     M  +    +  +YN++LGGL K G
Sbjct: 471 ERGIIADTTTYNALIHGYCISSHLKRAFMTYSTMLSERVSPDIETYNLLLGGLSKAG 527



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 150/302 (49%), Gaps = 8/302 (2%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL--LERA 102
           ++++   ++I  L ++    E + +   L +   +VP  I +  +I   GR +L  +  A
Sbjct: 92  FDVIACTVLIDGLFKSGQIKEAEYLFCNL-YQLNLVPNYITYSALID--GRCKLGDINGA 148

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHG 161
                EM   +    V  +++L+N  +  G L D  K L +++ K   P+ C+Y IL+ G
Sbjct: 149 ESALHEMEEKDCVPNVITYSSLINGYVKQGLLHDAFKVLRKMVHKNAMPNICTYAILLDG 208

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              +   + A  ++ +M +  L+  +      +  +    R++EA +L    M    +KP
Sbjct: 209 SFKAGWQDIALDLYSKMKQGGLKDNVFILDAFVNNMKRSGRMEEAEELVAK-MASGGLKP 267

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +L+ G    G++S AL + +EM    +  D   ++ LI+ LFK G K++  +I 
Sbjct: 268 DLVNYTNLMDGFLKSGKVSSALNLAQEMTSKNVVFDIVTFNVLINCLFKLG-KSDTESIY 326

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             M+E G  P+  TYN +++G  K+ ++ +A  + +EM  +    N I+ N+++ GLC+ 
Sbjct: 327 SAMREMGLSPDLATYNTMLNGNFKKGNWTSALELWNEMKSRKLIPNAITCNIMINGLCEA 386

Query: 342 GK 343
           G+
Sbjct: 387 GR 388



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 3/176 (1%)

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA-LKLKEDIMRVYNVKPDGQVF 226
           LE+A  +++EMV   + P +VTFG+++YGLC   ++ E  L L+E  M    +  +   +
Sbjct: 5   LEEALTLYEEMVGSGIFPDVVTFGSILYGLCKHGKLSEGKLLLRE--MGKMGMNLNNVSY 62

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
             L+  L   G+++ AL     M+      D    + LI  LFK+G+  E   +   + +
Sbjct: 63  TILLDALFKAGKVAEALMTLACMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCNLYQ 122

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
               PN +TY+ALI G CK  D   A + L EM +K C  N I+Y+ ++ G  K G
Sbjct: 123 LNLVPNYITYSALIDGRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQG 178



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           LE AL +++EM    +   V  F ++L      GKL   K L + M K  ++ +  SY I
Sbjct: 5   LEEALTLYEEMVGSGIFPDVVTFGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVSYTI 64

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L+     + ++ +A      M+ R     ++    LI GL    ++ EA  L  ++ ++ 
Sbjct: 65  LLDALFKAGKVAEALMTLACMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCNLYQL- 123

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N+ P+   +++LI G C +G+++ A     EM       +   YSSLI+   K G  ++ 
Sbjct: 124 NLVPNYITYSALIDGRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLHDA 183

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +L++M  +   PN  TY  L+ G  K    + A  +  +M   G K N    +  +  
Sbjct: 184 FKVLRKMVHKNAMPNICTYAILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDAFVNN 243

Query: 338 LCKDGK 343
           + + G+
Sbjct: 244 MKRSGR 249


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 146/303 (48%), Gaps = 7/303 (2%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           PL+ F  +++ Y  +I         DE  ++  ++       P   ++  ++    +A  
Sbjct: 73  PLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQ-----PDMHMYAALVKGLCKAGR 127

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
            E  L M   M     + + + +  +++ +    K    +E+ Q M EK ++P   +   
Sbjct: 128 GEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTA 187

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I+      R+ DA +V + M  R  +P + T+  L+ G C E +V +A+ L    MRV 
Sbjct: 188 VINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNK-MRVC 246

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            V PD   +  LI+G C  G +  A  +   M  D +  D   Y++LI+AL K GR ++ 
Sbjct: 247 GVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQA 306

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            ++   ++ RG KPN+VT+N+LI+G CK    + A+  L++M   GC  +  +Y+  +  
Sbjct: 307 CSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEH 366

Query: 338 LCK 340
           LCK
Sbjct: 367 LCK 369



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 129/286 (45%), Gaps = 6/286 (2%)

Query: 59  RAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV 118
           +AK  +EM Q + +      + P  +    VI  Y +   +  AL++ + M     +  V
Sbjct: 162 KAKEAEEMLQEMFE----KGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNV 217

Query: 119 KFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
             +N L+      GK+ +   L   M    V+PDA +YN+LI G  +   +E A+++   
Sbjct: 218 WTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRL 277

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M    L     T+  LI  LC + R D+A  L  D +    +KP+   F SLI GLC  G
Sbjct: 278 MEGDGLIADQYTYNALINALCKDGRTDQACSLF-DSLETRGIKPNAVTFNSLINGLCKSG 336

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           ++ +A    E+MV      D   YSS I  L K     E  + + EM ++  KP++V Y 
Sbjct: 337 KVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYT 396

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +I    KE ++        EM   GC  + ++Y   +   C +G+
Sbjct: 397 IVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGR 442



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 40/228 (17%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PDA ++N LI G   + +++ A  +FD+M  R     +V++  LI G C   R+DEA++L
Sbjct: 44  PDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAALIEGFCETGRIDEAVEL 103

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVG-------------ELSLALGVK---------- 246
             ++      +PD  ++A+L+KGLC  G             EL      +          
Sbjct: 104 FGEM-----DQPDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRC 158

Query: 247 --------EEMVRDKIEMDAG----IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
                   EEM+++  E          +++I+A  K GR ++   +L+ MK RGCKPN  
Sbjct: 159 WERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVW 218

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           TYNAL+ GFC E     A  +L++M   G   + ++YN+++ G C DG
Sbjct: 219 TYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDG 266



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 146/330 (44%), Gaps = 42/330 (12%)

Query: 50  YDLIITKL-GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDE 108
           Y+ +I  L  RA +   ++ +   ++   R  P    F ++I  Y R   ++ A  +FD+
Sbjct: 14  YNAVIRSLCRRADLASALRYLSLMVRSGWR--PDAYTFNSLIVGYCRTNQVDVARDLFDK 71

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168
           M        V  +  L+      G++D   ELF  M++   PD   Y  L+ G   + R 
Sbjct: 72  MPLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQ---PDMHMYAALVKGLCKAGRG 128

Query: 169 EDA-----------WK------------------------VFDEMVKRRLQPTLVTFGTL 193
           E+            W+                        +  EM ++ L P +VT   +
Sbjct: 129 EEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAV 188

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I   C E R+ +AL++ E +M++   KP+   + +L++G C  G++  A+ +  +M    
Sbjct: 189 INAYCKEGRMSDALRVLE-LMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCG 247

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           +  DA  Y+ LI      G       +L+ M+  G   +  TYNALI+  CK+   + A 
Sbjct: 248 VNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQAC 307

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
           ++ D +  +G K N +++N ++ GLCK GK
Sbjct: 308 SLFDSLETRGIKPNAVTFNSLINGLCKSGK 337



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 99/225 (44%), Gaps = 40/225 (17%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN +I        L  A +    MV+   +P   TF +LI G C   +VD A  L  D 
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLF-DK 71

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M +     D   +A+LI+G C  G +  A+ +  EM +  + M    Y++L+  L KAGR
Sbjct: 72  MPLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQPDMHM----YAALVKGLCKAGR 127

Query: 274 KNEFPAILKEMKERGCKPNS-----------------------------------VTYNA 298
             E   +L+ MKE G +P++                                   VT  A
Sbjct: 128 GEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTA 187

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +I+ +CKE     A  +L+ M  +GCK N  +YN ++ G C +GK
Sbjct: 188 VINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGK 232



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 2/221 (0%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +N L+N     G+ D+   LF  +E + + P+A ++N LI+G   S +++ AWK  ++MV
Sbjct: 290 YNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMV 349

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
                P   T+ + I  LC      E L    ++++  +VKP    +  +I  L      
Sbjct: 350 SAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQ-KDVKPSTVNYTIVIHKLLKERNY 408

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
            L      EMV      D   Y++ + A    GR NE   +L EM + G   +++ YN L
Sbjct: 409 GLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTL 468

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + G       + A +IL +M       N  +Y ++L  L +
Sbjct: 469 MDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVR 509



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/348 (20%), Positives = 143/348 (41%), Gaps = 57/348 (16%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTR-IVPKEIIFCNVIGFYGRARLLERALQMFDE 108
           Y+ +I  L +    D+   +   L  +TR I P  + F ++I    ++  ++ A +  ++
Sbjct: 290 YNALINALCKDGRTDQACSLFDSL--ETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEK 347

Query: 109 MSSFNVQMTVKFFNTLLNPKLTC-GKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRR 167
           M S         +++ +       G  + +  + ++++K V P   +Y I+IH  +  R 
Sbjct: 348 MVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERN 407

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
                + + EMV     P +VT+ T +   C+E R++EA  +  + M    V  D   + 
Sbjct: 408 YGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLME-MSKNGVTVDTMAYN 466

Query: 228 SLIKGLCAVGELSLALGVKEEM-----------------------------------VRD 252
           +L+ G  ++G+   A+ + ++M                                   V  
Sbjct: 467 TLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWK 526

Query: 253 KIEM-----------------DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            IE+                 ++G YSS++    + GR  E  +++  MKE     N   
Sbjct: 527 AIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDI 586

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y AL++ FCK + +  A+ ++  M   G   + +SY  +L GL  +G+
Sbjct: 587 YTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQ 634



 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 107/261 (40%), Gaps = 39/261 (14%)

Query: 3   TSSIRLACLP-RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAK 61
           T+S+R  C+  RL +   + +++ KN                  + + Y+ ++       
Sbjct: 431 TTSMRAYCIEGRLNEAENVLMEMSKNG--------------VTVDTMAYNTLMDGHASIG 476

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE-----------RALQMFDEMS 110
             D    IL Q+      VP +  +  ++    R RL+E           +A+++ D   
Sbjct: 477 QTDHAVSILKQMT-SVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFG 535

Query: 111 SFNVQMTVKF------FNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
            F+V    +F      ++++L      G+ +    L  +M E  +S +   Y  L+    
Sbjct: 536 LFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFC 595

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM--RVYNVKP 221
            S+R  DAW +   M++    P L+++  L+ GL  E + D+A   KE  M  R  +  P
Sbjct: 596 KSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKA---KEIFMNSRWKDYSP 652

Query: 222 DGQVFASLIKGLCAVGELSLA 242
           D  V+  +I GL   G   ++
Sbjct: 653 DEIVWKVIIDGLIKKGHSDIS 673


>gi|297741611|emb|CBI32743.3| unnamed protein product [Vitis vinifera]
          Length = 772

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 171/361 (47%), Gaps = 56/361 (15%)

Query: 38  HPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN 88
           H L+ FR+     L  +D      II  LGRA   +  + IL  +     +   E +F  
Sbjct: 134 HALQFFRWVERAGLFRHDRDTHLKIIEILGRASKLNHARCILLDMPKKG-VEWDEDLFVL 192

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVK--------------------FFNTLLNPK 128
           +I  YG+A +++ ++++F +M    V+ T+K                    +FN +LN  
Sbjct: 193 LIDSYGKAGIVQESVKVFQKMKELGVERTIKSYDALFKVILRRGRYMMAKRYFNAMLNEG 252

Query: 129 L--TCG-------------KLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAW 172
           +  TC              K++     F+ M E+ +SPD  +YN +I+G    +++E+A 
Sbjct: 253 VMPTCHTYNIMIWGFFLSLKVETANRFFEEMKERRISPDVVTYNTMINGYYRIKKMEEAE 312

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
           K F EM  R ++PT++++ T+I G     RVD+ L+L E+ M+ + +KP+   +++L+ G
Sbjct: 313 KFFVEMKGRNIEPTVISYTTMIKGYVSVGRVDDGLRLFEE-MKSFGIKPNAVTYSTLLPG 371

Query: 233 LCAVGELSLALGVKEEMVRDKIE-MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           LC   ++  A  V +EMV   I   D  I+  LI+   KAG+ +    +LK M       
Sbjct: 372 LCDGEKMLEAQNVVKEMVERYIAPKDNSIFMRLITCQCKAGQLDAAADVLKAMIRLSIPT 431

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP--------ISYNVILGGLCKDGK 343
            +  Y  LI  FCK   ++ A  +LD++ +K     P          YN+I+  LC  G+
Sbjct: 432 EAGHYGVLIENFCKSGVYDRAVKLLDKLIEKEIILRPQNSLEMESSGYNLIIEYLCNSGQ 491

Query: 344 C 344
            
Sbjct: 492 T 492



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 129/263 (49%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F+EM    +   V  +NT++N      K++  ++ F  M+ + 
Sbjct: 264 IWGFFLSLKV-ETANRFFEEMKERRISPDVVTYNTMINGYYRIKKMEEAEKFFVEMKGRN 322

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   SY  +I G V   R++D  ++F+EM    ++P  VT+ TL+ GLC   ++ EA 
Sbjct: 323 IEPTVISYTTMIKGYVSVGRVDDGLRLFEEMKSFGIKPNAVTYSTLLPGLCDGEKMLEAQ 382

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + ++++  Y    D  +F  LI   C  G+L  A  V + M+R  I  +AG Y  LI  
Sbjct: 383 NVVKEMVERYIAPKDNSIFMRLITCQCKAGQLDAAADVLKAMIRLSIPTEAGHYGVLIEN 442

Query: 268 LFKAGRKNEFPAILKEMKER--------GCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             K+G  +    +L ++ E+          +  S  YN +I   C       A T+  ++
Sbjct: 443 FCKSGVYDRAVKLLDKLIEKEIILRPQNSLEMESSGYNLIIEYLCNSGQTSKAETLFRQL 502

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
             KG + +PI++N ++ G  K+G
Sbjct: 503 MKKGVQ-DPIAFNNLIRGHSKEG 524



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 159/311 (51%), Gaps = 22/311 (7%)

Query: 45  YNLLHYDLIIT-KLGRA-KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           YN++ +   ++ K+  A + F+EM++         RI P  + +  +I  Y R + +E A
Sbjct: 260 YNIMIWGFFLSLKVETANRFFEEMKE--------RRISPDVVTYNTMINGYYRIKKMEEA 311

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
            + F EM   N++ TV  + T++   ++ G++D    LF+ M+ + + P+A +Y+ L+ G
Sbjct: 312 EKFFVEMKGRNIEPTVISYTTMIKGYVSVGRVDDGLRLFEEMKSFGIKPNAVTYSTLLPG 371

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVT-FGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                ++ +A  V  EMV+R + P   + F  LI   C   ++D A  + + ++R+ ++ 
Sbjct: 372 LCDGEKMLEAQNVVKEMVERYIAPKDNSIFMRLITCQCKAGQLDAAADVLKAMIRL-SIP 430

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMV--------RDKIEMDAGIYSSLISALFKAG 272
            +   +  LI+  C  G    A+ + ++++        ++ +EM++  Y+ +I  L  +G
Sbjct: 431 TEAGHYGVLIENFCKSGVYDRAVKLLDKLIEKEIILRPQNSLEMESSGYNLIIEYLCNSG 490

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           + ++   + +++ ++G + + + +N LI G  KE   E+AF IL  MG +       +Y 
Sbjct: 491 QTSKAETLFRQLMKKGVQ-DPIAFNNLIRGHSKEGAPESAFEILKIMGRREVPREADAYR 549

Query: 333 VILGGLCKDGK 343
           +++    K G+
Sbjct: 550 LLIESFLKKGE 560



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 133/309 (43%), Gaps = 16/309 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE-IIFCNVIGFYGRARLLERALQ 104
           N + Y  ++  L   +   E Q ++ ++  +  I PK+  IF  +I    +A  L+ A  
Sbjct: 361 NAVTYSTLLPGLCDGEKMLEAQNVVKEMV-ERYIAPKDNSIFMRLITCQCKAGQLDAAAD 419

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYV--------SPDACSY 155
           +   M   ++      +  L+      G  DR +K L +++EK +          ++  Y
Sbjct: 420 VLKAMIRLSIPTEAGHYGVLIENFCKSGVYDRAVKLLDKLIEKEIILRPQNSLEMESSGY 479

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N++I     S +   A  +F +++K+ +Q   + F  LI G   E   + A ++ + IM 
Sbjct: 480 NLIIEYLCNSGQTSKAETLFRQLMKKGVQDP-IAFNNLIRGHSKEGAPESAFEILK-IMG 537

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
              V  +   +  LI+     GE + A    + M+ +    D+ ++ S++ +LF+ GR  
Sbjct: 538 RREVPREADAYRLLIESFLKKGEPADAKTALDGMIENGHIPDSSLFRSVMESLFEDGRIQ 597

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
               ++  M E+G K N      ++         E A   +D + + GC+ +   ++ +L
Sbjct: 598 TASRVMNNMVEKGVKENMDLVAKILEALLLRGHVEEALGRIDLLMNNGCEPD---FDGLL 654

Query: 336 GGLCKDGKC 344
             LC  GK 
Sbjct: 655 SVLCAKGKT 663



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 117/271 (43%), Gaps = 8/271 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+LII  L  +    + + +  QL    + V   I F N+I  + +    E A ++   M
Sbjct: 479 YNLIIEYLCNSGQTSKAETLFRQLMK--KGVQDPIAFNNLIRGHSKEGAPESAFEILKIM 536

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGK-LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168
               V      +  L+   L  G+  D    L  ++E    PD+  +  ++       R+
Sbjct: 537 GRREVPREADAYRLLIESFLKKGEPADAKTALDGMIENGHIPDSSLFRSVMESLFEDGRI 596

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A +V + MV++ ++  +     ++  L L   V+EAL  + D++     +PD   F  
Sbjct: 597 QTASRVMNNMVEKGVKENMDLVAKILEALLLRGHVEEALG-RIDLLMNNGCEPD---FDG 652

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+  LCA G+   AL + +  +     +    Y +++ AL  AG+     +IL ++ ++G
Sbjct: 653 LLSVLCAKGKTIAALKLLDFGLERDYNISFSSYENVLDALLTAGKTLNAYSILCKIMQKG 712

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
              +  +   LI    +E + + A  IL  M
Sbjct: 713 GATDWSSCKDLIRSLNEEGNTKQA-DILSRM 742



 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 60/135 (44%)

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
           D AL+    + R    + D      +I+ L    +L+ A  +  +M +  +E D  ++  
Sbjct: 133 DHALQFFRWVERAGLFRHDRDTHLKIIEILGRASKLNHARCILLDMPKKGVEWDEDLFVL 192

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LI +  KAG   E   + ++MKE G +    +Y+AL     +   +  A    + M ++G
Sbjct: 193 LIDSYGKAGIVQESVKVFQKMKELGVERTIKSYDALFKVILRRGRYMMAKRYFNAMLNEG 252

Query: 324 CKANPISYNVILGGL 338
                 +YN+++ G 
Sbjct: 253 VMPTCHTYNIMIWGF 267


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 144/306 (47%), Gaps = 8/306 (2%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARL 98
           LK F  N + Y  ++  L +    DE Q +L ++       P  + F  ++ GF    RL
Sbjct: 308 LKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPG-----PNVVHFNTLVNGFVRNGRL 362

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
            E    ++D+M +      V  F+TL+N     G      EL   M+ K   P+  +Y I
Sbjct: 363 NEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTI 422

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G     +LE+A  +  EM+ +      V +  LI  LC   ++ EAL +  + M   
Sbjct: 423 LIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGE-MSSK 481

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             KPD   F SLI GLC V E+  AL +  +MV + +  ++  +++LI A  + G   E 
Sbjct: 482 GCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEA 541

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++ +M  RGC  + +TYN LI   CK    E    + +EM  KG   + I+ N+++ G
Sbjct: 542 LKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILING 601

Query: 338 LCKDGK 343
            C  GK
Sbjct: 602 FCTAGK 607



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 142/299 (47%), Gaps = 2/299 (0%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++H++ ++    R    +E    ++    +   VP    F  ++    +  L   AL++
Sbjct: 345 NVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALEL 404

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            ++M +   +  +  +  L++     G+L+    +  +++ K  S +   YN LI     
Sbjct: 405 VNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCK 464

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             ++ +A  +F EM  +  +P + TF +LI+GLC    +++AL L  D M +  V  +  
Sbjct: 465 HGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRD-MVLEGVIANSV 523

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI      GE+  AL +  +M+     +D   Y+ LI AL K G   +   + +EM
Sbjct: 524 TFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEM 583

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G  P+ +T N LI+GFC       A   + +M  +G   + ++YN ++ GLCK G+
Sbjct: 584 IRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGR 642



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 125/253 (49%), Gaps = 3/253 (1%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVS 149
           GF  + +L E  L +  EM +    +    +N L++     GK+    ++F ++  K   
Sbjct: 426 GFCKKGQLEEAGL-ILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCK 484

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PD  ++N LI G      +EDA  ++ +MV   +    VTF TLI+       + EALKL
Sbjct: 485 PDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKL 544

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
             D M       D   +  LIK LC  G +   LG+ EEM+R  +       + LI+   
Sbjct: 545 VND-MLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFC 603

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
            AG+ +     +++M  RG  P+ VTYN+LI+G CK    + A  + +++  +G + + I
Sbjct: 604 TAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSI 663

Query: 330 SYNVILGGLCKDG 342
           +YN ++  LC++G
Sbjct: 664 TYNTLICWLCREG 676



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 127/268 (47%), Gaps = 17/268 (6%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL------LNPKLTCGK 133
           VP  +I+  +I    +   ++ AL++ +EM        V  FNT+      LN  L   K
Sbjct: 242 VPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAK 301

Query: 134 L-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           L DRM      + K  +P+  +Y  L+HG   + R+++A      ++ +   P +V F T
Sbjct: 302 LVDRM------ILKGFTPNDMTYGYLMHGLCKTCRIDEA----QALLSKVPGPNVVHFNT 351

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           L+ G     R++EA     D M      PD   F++L+ GLC  G    AL +  +M   
Sbjct: 352 LVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAK 411

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
             + +   Y+ LI    K G+  E   IL+EM  +G   N+V YNALIS  CK      A
Sbjct: 412 GCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEA 471

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCK 340
             +  EM  KGCK +  ++N ++ GLC+
Sbjct: 472 LDMFGEMSSKGCKPDIFTFNSLIFGLCR 499



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 176/375 (46%), Gaps = 47/375 (12%)

Query: 4   SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMF 63
           +  +L  L  L  D + ++++FK          A   K + ++   Y L+I KLG A  F
Sbjct: 70  TPFQLCKLLELPLDVETSMEIFK---------WAGAQKGYCHSFSVYYLLIDKLGAAAGF 120

Query: 64  DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS-FNVQMTVKFFN 122
             + ++L Q+K +  IV +E +F  ++ +YGRA L  +A ++  +M   +  + + + +N
Sbjct: 121 KVIDRLLLQMKEEG-IVFRESLFILIMKYYGRAGLPGQATRLLLDMKGVYCCEPSFRSYN 179

Query: 123 TLLNPKLTCGKLDRMKE--LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
            +L+  L  G    +     + ++ K VSP+  ++ +++    +   +++A  +  +M K
Sbjct: 180 VVLDV-LVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTK 238

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
               P  + + TLI  L    RVDEALKL E+ M +    PD   F ++I G C +  + 
Sbjct: 239 HGCVPNSMIYQTLIDALSKRDRVDEALKLLEE-MFLMGCPPDVNTFNTVIYGFCRLNRVL 297

Query: 241 LALGVKEEMVRDKI---EMDAGI----------------------------YSSLISALF 269
               + + M+       +M  G                             +++L++   
Sbjct: 298 EGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFV 357

Query: 270 KAGRKNEFPA-ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
           + GR NE  A +  +M   G  P+  T++ L++G CK+  F +A  ++++M  KGCK N 
Sbjct: 358 RNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNL 417

Query: 329 ISYNVILGGLCKDGK 343
            +Y +++ G CK G+
Sbjct: 418 NTYTILIDGFCKKGQ 432



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 147/304 (48%), Gaps = 6/304 (1%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           ND +A   KP   NL  Y ++I    +    +E   IL ++      +   + +  +I  
Sbjct: 406 NDMDAKGCKP---NLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSL-NTVGYNALISA 461

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPD 151
             +   +  AL MF EMSS   +  +  FN+L+       +++    L++ M  + V  +
Sbjct: 462 LCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIAN 521

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
           + ++N LIH  +    +++A K+ ++M+ R      +T+  LI  LC    V++ L L E
Sbjct: 522 SVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFE 581

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           +++R   + P       LI G C  G++  AL    +M+      D   Y+SLI+ L K 
Sbjct: 582 EMIR-KGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKR 640

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           GR  E   + ++++  G +P+S+TYN LI   C+E  F+ A  +L    + G   N +++
Sbjct: 641 GRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTW 700

Query: 332 NVIL 335
           N+++
Sbjct: 701 NILV 704



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 128/272 (47%), Gaps = 3/272 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  N + Y+ +I+ L +     E   +  ++       P    F ++I    R   +E
Sbjct: 446 KGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKG-CKPDIFTFNSLIFGLCRVDEME 504

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILI 159
            AL ++ +M    V      FNTL++  L  G++    +L   M     P D  +YN LI
Sbjct: 505 DALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLI 564

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
                +  +E    +F+EM+++ L P+++T   LI G C   +V  AL+   D++     
Sbjct: 565 KALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIH-RGF 623

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   + SLI GLC  G +  AL + E++  + I+ D+  Y++LI  L + G  ++   
Sbjct: 624 SPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACF 683

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
           +L    E G  PN VT+N L+  F K+ + E 
Sbjct: 684 LLYRGVENGFVPNDVTWNILVYNFGKQSNSEG 715


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 150/331 (45%), Gaps = 40/331 (12%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           + Y+ +I  L + K   E +++  ++K      P  + F  +I  + +   +E    + +
Sbjct: 165 VSYNTVINGLCKGKRLVEAKELFKEMK-GGECKPNSVTFSALIDGFCKNGDVEEGFGLLE 223

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM----------------------E 145
           EM    ++  V  ++ L++   + G ++R KELF  M                      +
Sbjct: 224 EMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQ 283

Query: 146 KY--------------VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           K+              V PD  +Y +L  G   + R  DA KV D MVKR  +P  VT+ 
Sbjct: 284 KWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYN 343

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
            +I GLC E RVD+AL + E + +    KPD   +++L+KGLC VG++  A+ +   ++ 
Sbjct: 344 AIINGLCKEGRVDDALGILETMAK-KGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMS 402

Query: 252 DK--IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
            +  I+ D   ++ +I  L K  R      +   M ERG   N VTYN LI G+      
Sbjct: 403 KEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKL 462

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             A  +  +  D G   N  +Y V++ GLCK
Sbjct: 463 TKALELWKDAVDSGISPNAATYTVLINGLCK 493



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 156/345 (45%), Gaps = 41/345 (11%)

Query: 38  HPLKPFRYNLLHY---DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYG 94
           H L+ +  ++  Y   + +I  L +AK +D +  + H       + P       +I  + 
Sbjct: 47  HTLQDYPNSIPSYSSCNTLIDNLRKAKHYDHVISV-HSKMASVSVFPCFTSLSALIESFV 105

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDAC 153
             +    A  +   +      + V  FN LL      G   +  +LF +M++  + PD  
Sbjct: 106 NTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCV 165

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           SYN +I+G    +RL +A ++F EM     +P  VTF  LI G C    V+E   L E+ 
Sbjct: 166 SYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEE- 224

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL----- 268
           M    ++ D  V+++LI G C+ G++     +  EM+R  +  +   YS L++AL     
Sbjct: 225 MEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQK 284

Query: 269 ------------------------------FKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
                                          K GR ++   +L  M +RG +PN+VTYNA
Sbjct: 285 WKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNA 344

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +I+G CKE   + A  IL+ M  KG K + ++Y+ ++ GLC  GK
Sbjct: 345 IINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGK 389



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 127/284 (44%), Gaps = 45/284 (15%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----VSPDACS 154
           +ER  ++F+EM   NV   V  ++ L+N    C K  + KE  Q+++      V PD  +
Sbjct: 250 IERGKELFNEMLRKNVTPNVVTYSCLMNA--LCKK-QKWKEAAQMLDTMTGCKVRPDVVA 306

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           Y +L  G   + R  DA KV D MVKR  +P  VT+  +I GLC E RVD+AL + E + 
Sbjct: 307 YTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMA 366

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALG------------------------------ 244
           +    KPD   +++L+KGLC VG++  A+                               
Sbjct: 367 K-KGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQR 425

Query: 245 -------VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
                  V   MV      +   Y+ LI     AG+  +   + K+  + G  PN+ TY 
Sbjct: 426 RLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYT 485

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            LI+G CK +    A  + ++    G +     YN ++  LC++
Sbjct: 486 VLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRE 529



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 137/301 (45%), Gaps = 37/301 (12%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRM 137
           + P  + +  ++    + +  + A QM D M+   V+  V  +  L +     G+  D +
Sbjct: 265 VTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAI 324

Query: 138 KELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           K L  ++++   P+  +YN +I+G     R++DA  + + M K+  +P +VT+ TL+ GL
Sbjct: 325 KVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGL 384

Query: 198 CLELRVDEALKLKEDIM-RVYNVKPDGQVFASLIKGLC---------------------- 234
           C   ++DEA+ L   +M + +++KPD   F  +I+ LC                      
Sbjct: 385 CGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPS 444

Query: 235 -------------AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
                        + G+L+ AL + ++ V   I  +A  Y+ LI+ L K    +    + 
Sbjct: 445 NIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLF 504

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            + +  G +P    YN L++  C+E   E A  +  EM +     + +S+N+I+ G  K 
Sbjct: 505 NKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKA 564

Query: 342 G 342
           G
Sbjct: 565 G 565



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 143/300 (47%), Gaps = 3/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +++ Y  ++  L      DE   +L+ L   +  I P    F  VI    + R L  A +
Sbjct: 373 DVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKR 432

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCV 163
           ++  M        +  +N L++  L+ GKL +  EL++  ++  +SP+A +Y +LI+G  
Sbjct: 433 VYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLC 492

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
             + L  A  +F++      +PT+  + TL+  LC E  V++A  L ++ MR  N  PD 
Sbjct: 493 KMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQE-MRNANHDPDV 551

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             F  +I G    G++  A  +  EM+   +  D   +S LI+   K G+ +E  ++ + 
Sbjct: 552 VSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYER 611

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M   G  P++V +++L+ G+  +   E   ++L +M DK    +    + IL  LC   K
Sbjct: 612 MVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQMADKDVVLDSKLTSTILACLCNMSK 671



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 125/262 (47%), Gaps = 5/262 (1%)

Query: 41  KPFRYNLLHYDLIITK-LGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           + F  N++ Y+++I   L   K+   ++  L +   D+ I P    +  +I    + ++L
Sbjct: 440 RGFPSNIVTYNILIDGYLSAGKLTKALE--LWKDAVDSGISPNAATYTVLINGLCKMQML 497

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
             A  +F++  +   + TV  +NTL+        +++ + LFQ M      PD  S+NI+
Sbjct: 498 SIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNII 557

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G + +  +E A ++  EM+   L P  +TF  LI       ++DEA  L E ++   +
Sbjct: 558 IDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGH 617

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V PD  +F SL+KG    G+    + + ++M    + +D+ + S++++ L    +  +  
Sbjct: 618 V-PDAVLFDSLLKGYSLKGKTEKVVSMLQQMADKDVVLDSKLTSTILACLCNMSKDVDIE 676

Query: 279 AILKEMKERGCKPNSVTYNALI 300
            IL +  +      S+  N L+
Sbjct: 677 KILPKFSQHTSVGASIKCNELL 698


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 154/336 (45%), Gaps = 42/336 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I  L  +K  DE  ++  +LK      P  + +  VI    +A  +E  L+ 
Sbjct: 362 DVISYTTVIKGLADSKRIDEACELFEKLKT-AGCSPNVVAYTAVIDGLLKAGRIEDGLKN 420

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           F++MS  +   T   +  +++       L D  K   Q+++K   PD  +Y  LI G   
Sbjct: 421 FEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSK 480

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--MRVYNVKPD 222
           + ++++A K+ D M+ +  +PT VT+G++++G C    ++EA   KE I  MR    +P 
Sbjct: 481 ASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEA---KEVIAQMRERGCEPG 537

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
             +F SL+    + G    A  V  EM       D  +Y+SLI  LF  GR  E   +  
Sbjct: 538 LFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFD 597

Query: 283 EMKERGCKPNSVT-----------------------------------YNALISGFCKEE 307
            M E+GC P+++T                                   YN+L+ G+ K E
Sbjct: 598 SMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLE 657

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             + AF + D M   G K N +++NV++ GL KDGK
Sbjct: 658 RVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGK 693



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 139/287 (48%), Gaps = 5/287 (1%)

Query: 58  GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT 117
           GRA   +E  Q+L ++       P  I++ ++I        +  A  +FD M        
Sbjct: 552 GRA---EEAYQVLTEMTA-RGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPD 607

Query: 118 VKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFD 176
              + T++      G ++   E+ ++M K  V PD  +YN L+ G V   R++ A+ V+D
Sbjct: 608 ALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYD 667

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
            MV   ++P  VTF  L++GL  + + D A  L ++++    V P    +  LI GL   
Sbjct: 668 RMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKA 727

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           G +S A    +EM+   I  +   Y+SLI +L KAGR  E   ++++M + G  P+   Y
Sbjct: 728 GRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAY 787

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +ALI+G       + A+ +  EM  +GC  N ++Y V+  G    G+
Sbjct: 788 SALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGR 834



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 143/282 (50%), Gaps = 7/282 (2%)

Query: 66  MQQILHQLK--HDTRIVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
           M++ L  LK  H T ++P +++ CN++     +AR +++A+++F EM S   + T+  +N
Sbjct: 1   MEEALDCLKEMHTTGLMP-DVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYN 59

Query: 123 TLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
           T+++   +  K+D   + F  M +    PD  ++  LIHG   + + +    + ++ +KR
Sbjct: 60  TVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKR 119

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
             +P +  + ++I+G C    +D   K+ E+++    + PD   +  LI  LC +G +  
Sbjct: 120 -FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCI-PDAAAYFVLIDPLCKLGRVDE 177

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           A  + E M +     D   + +LI AL   G+ +E   + +EM ERG +P     ++LI 
Sbjct: 178 AYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIF 237

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             CK    + A  I   +  K    + ++YN ++ G CK G+
Sbjct: 238 ALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGR 279



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 138/288 (47%), Gaps = 10/288 (3%)

Query: 56  KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ 115
           KLGR    D ++ +L  ++ D    P    +  ++  + RA  L+ AL++F  +SS+  +
Sbjct: 276 KLGRVD--DGLKLLLQMVECDN--FPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCK 331

Query: 116 MTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVF 175
                + T++       +++  K  F       + D  SY  +I G   S+R+++A ++F
Sbjct: 332 PNAATYTTIIQGLYDAQRMEEAKAFFD-----EALDVISYTTVIKGLADSKRIDEACELF 386

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           +++      P +V +  +I GL    R+++ LK  ED M   +  P    +  +I GLC 
Sbjct: 387 EKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFED-MSGSSCVPTRTTYTVVIDGLCK 445

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
              L  A  V E+MV+     D   Y++LI    KA + +E   +L  M  +G +P +VT
Sbjct: 446 AQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVT 505

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y +++ GFCK +    A  ++ +M ++GC+     +  +L      G+
Sbjct: 506 YGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGR 553



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 139/299 (46%), Gaps = 9/299 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y++++    RA   D+  + L +L       P    +  +I     A+ +E A   
Sbjct: 298 DIQTYNILVAGFSRANRLDDALE-LFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAF 356

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           FDE       + V  + T++       ++D   ELF+ ++    SP+  +Y  +I G + 
Sbjct: 357 FDE------ALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLK 410

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R+ED  K F++M      PT  T+  +I GLC    + +A K+ E +++   V PD  
Sbjct: 411 AGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCV-PDTI 469

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G     ++  A  + + M+    E  A  Y S++    K    NE   ++ +M
Sbjct: 470 TYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQM 529

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +ERGC+P    + +L+S +  +   E A+ +L EM  +GC  + I Y  ++  L   G+
Sbjct: 530 RERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGR 588



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 134/308 (43%), Gaps = 33/308 (10%)

Query: 68  QILHQLKHDT--RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125
           Q+ H L +    R  P   ++ +VI  Y +A  L+   ++ +EM +         +  L+
Sbjct: 107 QVGHMLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLI 166

Query: 126 NPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ 184
           +P    G++D   ELF+ M K     D  ++  LI       +L++A +++ EM++R  +
Sbjct: 167 DPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYE 226

Query: 185 PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
           P L    +LI+ LC   +VDEA ++ + ++    V      + SL+ G C +G +   L 
Sbjct: 227 PYLEVQDSLIFALCKAGKVDEANEIYQTVV-AKKVATSRVAYNSLMDGYCKLGRVDDGLK 285

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           +  +MV      D   Y+ L++   +A R ++   + K +   GCKPN+ TY  +I G  
Sbjct: 286 LLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLY 345

Query: 305 KEEDFEAAFTILDEMGD-----------------------------KGCKANPISYNVIL 335
             +  E A    DE  D                              GC  N ++Y  ++
Sbjct: 346 DAQRMEEAKAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVI 405

Query: 336 GGLCKDGK 343
            GL K G+
Sbjct: 406 DGLLKAGR 413



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 121/260 (46%), Gaps = 39/260 (15%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           + L Y  II    +    +   +IL +L   + + P    + +++  Y +   +++A  +
Sbjct: 607 DALTYGTIIQNFSKIGNVEAAGEIL-ELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGV 665

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEK-YVSPDACSYNILIHGCV 163
           +D M +  ++     FN L++     GK DR   LF +++EK  V P   SY ILI G  
Sbjct: 666 YDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLG 725

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            + R+ +A+  F EM+ R + P   T+ +LIY L    R+ EA KL ED++++  V PD 
Sbjct: 726 KAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKL-GVNPDV 784

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
           Q +++LI GL                          I SS++   +          + +E
Sbjct: 785 QAYSALITGL--------------------------IDSSMVDTAWD---------VFQE 809

Query: 284 MKERGCKPNSVTYNALISGF 303
           M +RGC PN VTY  L  GF
Sbjct: 810 MMKRGCAPNEVTYKVLRRGF 829



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 145/305 (47%), Gaps = 26/305 (8%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA-------RL 98
            ++ Y+ +I+ L      DE  +  + +  D    P  I F  +I  + +A        L
Sbjct: 54  TIVSYNTVISGLASIDKMDEAYKFFNSMI-DNGCEPDVIAFTTLIHGFCKAGQPQVGHML 112

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACS 154
           L +AL+ F        +  V  + ++++     G LD     F+I+E+ ++    PDA +
Sbjct: 113 LNQALKRF--------RPDVFLYTSVIHGYCKAGDLDTG---FKILEEMLAAGCIPDAAA 161

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-KEDI 213
           Y +LI       R+++A+++F+ M K       VTF TLI  L    ++DEA +L +E I
Sbjct: 162 YFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMI 221

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
            R Y  +P  +V  SLI  LC  G++  A  + + +V  K+      Y+SL+    K GR
Sbjct: 222 ERGY--EPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGR 279

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            ++   +L +M E    P+  TYN L++GF +    + A  +   +   GCK N  +Y  
Sbjct: 280 VDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTT 339

Query: 334 ILGGL 338
           I+ GL
Sbjct: 340 IIQGL 344



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 4/162 (2%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           A  +KP   N + +++++  L +    D    +  ++     + P  + +  +I   G+A
Sbjct: 671 ASGIKP---NAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKA 727

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSY 155
             +  A   F EM    +      + +L+      G++   K+L + M K  V+PD  +Y
Sbjct: 728 GRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAY 787

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           + LI G + S  ++ AW VF EM+KR   P  VT+  L  G 
Sbjct: 788 SALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGF 829


>gi|302763351|ref|XP_002965097.1| hypothetical protein SELMODRAFT_82937 [Selaginella moellendorffii]
 gi|300167330|gb|EFJ33935.1| hypothetical protein SELMODRAFT_82937 [Selaginella moellendorffii]
          Length = 540

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 156/325 (48%), Gaps = 18/325 (5%)

Query: 15  QKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 74
           +K+   AL  F + +P  +            +++ Y  +I  L  +   D   ++  ++ 
Sbjct: 52  RKEVDQALSYFHSVSPRSD-----------LDVVSYTTLIMGLADSGRIDVACELFEEMS 100

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
                    + +  +I    +A   ++A+  F+ M +      ++ F  ++      GKL
Sbjct: 101 SSGSQCV--VAYTAIINALFKAHRPDQAIACFERMVARKCDPDLRTFTVVITGLCKAGKL 158

Query: 135 DRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           +R  E+FQ M  K   PD   Y  L+ G   +  +++A K+  E+V R ++PT VT+ + 
Sbjct: 159 NRACEVFQEMNRKGWKPDIIVYTSLVDGLSKASMMDEARKLLQEIVSRGMKPTEVTYTSF 218

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I GLC   RV+EA KL  ++ ++       +V   +  G    G++  AL +K+EMV+  
Sbjct: 219 ISGLCKNGRVEEAGKLVREMGKMCA----AEVLHCIFGGYVLEGKIEEALTLKDEMVKKG 274

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           + +D   Y++LI  LF   R +E   + + M  +GC P++ TY  ++S FCK+   +AA 
Sbjct: 275 VTLDVRCYTNLIHGLFYVRRNDEAQEMFEAMVRQGCVPDTRTYGMIVSHFCKQGKMQAAC 334

Query: 314 TILDEMGDKGCKANPISYNVILGGL 338
            +++ M   G +AN   YN ++ G 
Sbjct: 335 KVVEIMDAAGLEANCHVYNSLMDGF 359



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 117/245 (47%), Gaps = 5/245 (2%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL 158
             RA ++  EM +  ++ +      +L       ++D+    F  +      D  SY  L
Sbjct: 20  FSRAYELLKEMEALGIKKSQVTHGIILKALCERKEVDQALSYFHSVSPRSDLDVVSYTTL 79

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   S R++ A ++F+EM     Q  +V +  +I  L    R D+A+   E  M    
Sbjct: 80  IMGLADSGRIDVACELFEEMSSSGSQ-CVVAYTAIINALFKAHRPDQAIACFER-MVARK 137

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
             PD + F  +I GLC  G+L+ A  V +EM R   + D  +Y+SL+  L KA   +E  
Sbjct: 138 CDPDLRTFTVVITGLCKAGKLNRACEVFQEMNRKGWKPDIIVYTSLVDGLSKASMMDEAR 197

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +L+E+  RG KP  VTY + ISG CK    E A  ++ EMG K C A  +  + I GG 
Sbjct: 198 KLLQEIVSRGMKPTEVTYTSFISGLCKNGRVEEAGKLVREMG-KMCAAEVL--HCIFGGY 254

Query: 339 CKDGK 343
             +GK
Sbjct: 255 VLEGK 259



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 155/371 (41%), Gaps = 73/371 (19%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL--------------------------- 73
           K ++ +++ Y  ++  L +A M DE +++L ++                           
Sbjct: 171 KGWKPDIIVYTSLVDGLSKASMMDEARKLLQEIVSRGMKPTEVTYTSFISGLCKNGRVEE 230

Query: 74  -----KHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
                +   ++   E++ C + G Y     +E AL + DEM    V + V+ +  L++  
Sbjct: 231 AGKLVREMGKMCAAEVLHC-IFGGYVLEGKIEEALTLKDEMVKKGVTLDVRCYTNLIHGL 289

Query: 129 LTCGKLDRMKELFQIM-EKYVSPD-------------------ACS-------------- 154
               + D  +E+F+ M  +   PD                   AC               
Sbjct: 290 FYVRRNDEAQEMFEAMVRQGCVPDTRTYGMIVSHFCKQGKMQAACKVVEIMDAAGLEANC 349

Query: 155 --YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC-LELRVDEALKLKE 211
             YN L+ G +   R  +A  V+  M+++ ++P++VT+  L+ GLC L    D  L L+E
Sbjct: 350 HVYNSLMDGFLGVNRAREAINVYSTMLRKMVKPSIVTYNILMLGLCKLGQTADARLVLRE 409

Query: 212 DIMRVYN-VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
             MR  + + P    + +LI GL   G    A+ V  EMV + +  D    +SLI AL  
Sbjct: 410 --MRERDGIVPTIVSYRTLIHGLGKAGRADEAIDVFTEMVDNGVVPDCPSCTSLIQALAM 467

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
           A R +E   +L++M   G  P+++ YNAL+   C       A+ +L EM D  C  +  +
Sbjct: 468 ADRMDEATQLLRDMPRMGITPDALAYNALVKVLCGGAKVGPAWDVLVEMMDNSCVPDGST 527

Query: 331 YNVILGGLCKD 341
           +  +  G   D
Sbjct: 528 FRAMKLGFKAD 538



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 11/194 (5%)

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           D  SYNI+I G  ++ R   A+++  EM    ++ + VT G ++  LC    VD+AL   
Sbjct: 3   DVASYNIVIRGLCLAGRFSRAYELLKEMEALGIKKSQVTHGIILKALCERKEVDQALSY- 61

Query: 211 EDIMRVYNVKP----DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266
                 ++V P    D   + +LI GL   G + +A  + EEM     +     Y+++I+
Sbjct: 62  -----FHSVSPRSDLDVVSYTTLIMGLADSGRIDVACELFEEMSSSGSQCVVA-YTAIIN 115

Query: 267 ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326
           ALFKA R ++  A  + M  R C P+  T+  +I+G CK      A  +  EM  KG K 
Sbjct: 116 ALFKAHRPDQAIACFERMVARKCDPDLRTFTVVITGLCKAGKLNRACEVFQEMNRKGWKP 175

Query: 327 NPISYNVILGGLCK 340
           + I Y  ++ GL K
Sbjct: 176 DIIVYTSLVDGLSK 189



 Score = 41.2 bits (95), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
           +D   Y+ +I  L  AGR +    +LKEM+  G K + VT+  ++   C+ ++ + A + 
Sbjct: 2   LDVASYNIVIRGLCLAGRFSRAYELLKEMEALGIKKSQVTHGIILKALCERKEVDQALSY 61

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
              +  +    + +SY  ++ GL   G+
Sbjct: 62  FHSVSPRS-DLDVVSYTTLIMGLADSGR 88


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 129/240 (53%), Gaps = 2/240 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           A+ +  +M    +Q     FNTL+N +   G++     LF +++ +   PD  SY+ +I+
Sbjct: 146 AISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVIN 205

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G   S     A ++  +M ++  +P LV + T+I  LC +  V++A+ L  +++    + 
Sbjct: 206 GLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVD-RGIP 264

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   +++++ G C++G L+ A  +  EMV   +  +   ++ L+  L K G  +E   +
Sbjct: 265 PDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCV 324

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            + M ++G +PN+ TYNAL+ G+C     + A  +LD M DKGC     SYN+++ G CK
Sbjct: 325 FEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCK 384



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 135/264 (51%), Gaps = 2/264 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           ++P  + F  ++    +  ++  A  +F+ M+    +     +N L++      ++D  +
Sbjct: 298 VMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQ 357

Query: 139 ELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           ++  IM +K  +P   SYNILI+G    RRL++A  +  EM ++ L P  VT+ TL+ GL
Sbjct: 358 KVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGL 417

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C   R  EAL L ++ M    + PD   +++L+ GLC  G L  AL + + M   KIE D
Sbjct: 418 CQVGRPQEALNLFKE-MCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPD 476

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
             +Y+ LI  +F AG+      +  ++   G +P   TY  +I G  KE   + A+ +  
Sbjct: 477 IVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFR 536

Query: 318 EMGDKGCKANPISYNVILGGLCKD 341
           +M D G   N  SYNVI+ G  ++
Sbjct: 537 KMEDDGFLPNSCSYNVIIQGFLQN 560



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 157/327 (48%), Gaps = 13/327 (3%)

Query: 17  DPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD 76
           +  +ALQL +         E    KP   NL+ Y  II  L +  + ++   +L ++  D
Sbjct: 212 NTSMALQLLRK-------MEEKGCKP---NLVAYTTIIDSLCKDTLVNDAMDLLSEMV-D 260

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
             I P  + +  ++  +     L  A  +F+EM   NV      F  L++     G +  
Sbjct: 261 RGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSE 320

Query: 137 MKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
            + +F+ M +K   P+A +YN L+ G  ++ ++++A KV D MV +   P + ++  LI 
Sbjct: 321 ARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILIN 380

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   R+DEA  L  + M    + PD   +++L++GLC VG    AL + +EM    + 
Sbjct: 381 GYCKRRRLDEAKSLLVE-MSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLL 439

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   YS+L+  L K G  +E   +LK M+E   +P+ V YN LI G       E A  +
Sbjct: 440 PDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKEL 499

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
             ++   G +    +Y +++ GL K+G
Sbjct: 500 FSKLFADGIQPTIRTYTIMIKGLLKEG 526



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 145/291 (49%), Gaps = 3/291 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + + +++  L +  M  E + +   +       P    +  ++  Y     ++ A ++
Sbjct: 301 NTVTFTILVDGLCKEGMVSEARCVFEAMTKKGA-EPNAYTYNALMDGYCLNNQMDEAQKV 359

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            D M        V  +N L+N      +LD  K L  ++ EK ++PD  +Y+ L+ G   
Sbjct: 360 LDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQ 419

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R ++A  +F EM    L P L+T+ TL+ GLC    +DEALKL +  M+   ++PD  
Sbjct: 420 VGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKS-MQESKIEPDIV 478

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++  LI+G+   G+L +A  +  ++  D I+     Y+ +I  L K G  +E   + ++M
Sbjct: 479 LYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKM 538

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           ++ G  PNS +YN +I GF + +D   A  ++DEM  K   A+  ++ ++L
Sbjct: 539 EDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLL 589



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 132/266 (49%), Gaps = 2/266 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  I F  +I        ++ A+ +F+EM     Q  V  ++T++N     G      
Sbjct: 158 IQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMAL 217

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           +L + ME K   P+  +Y  +I        + DA  +  EMV R + P +VT+ T+++G 
Sbjct: 218 QLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGF 277

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C    ++EA  L  + M   NV P+   F  L+ GLC  G +S A  V E M +   E +
Sbjct: 278 CSLGHLNEATILFNE-MVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPN 336

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           A  Y++L+       + +E   +L  M ++GC P   +YN LI+G+CK    + A ++L 
Sbjct: 337 AYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLV 396

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
           EM +K    + ++Y+ ++ GLC+ G+
Sbjct: 397 EMSEKELTPDTVTYSTLMQGLCQVGR 422



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 142/299 (47%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I  L ++       Q+L +++ +    P  + +  +I    +  L+  A+ +
Sbjct: 196 DVISYSTVINGLCKSGNTSMALQLLRKME-EKGCKPNLVAYTTIIDSLCKDTLVNDAMDL 254

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             EM    +   V  ++T+L+   + G L+    LF +++ + V P+  ++ IL+ G   
Sbjct: 255 LSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCK 314

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              + +A  VF+ M K+  +P   T+  L+ G CL  ++DEA K+  DIM      P   
Sbjct: 315 EGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVL-DIMVDKGCAPVVH 373

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LI G C    L  A  +  EM   ++  D   YS+L+  L + GR  E   + KEM
Sbjct: 374 SYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEM 433

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  P+ +TY+ L+ G CK    + A  +L  M +   + + + YN+++ G+   GK
Sbjct: 434 CSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGK 492


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 135/283 (47%), Gaps = 41/283 (14%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDAC 153
           R R  + A  M   +   NV +    FNT++   L  GKL    EL++ M  K   PDA 
Sbjct: 292 RVRQADEARAMLGRVPELNVVL----FNTVIGGCLAEGKLAEATELYETMGLKGCQPDAH 347

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF----------------------- 190
           +Y+IL+HG     R+  A ++  EM K+   P +VT+                       
Sbjct: 348 TYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEM 407

Query: 191 ------------GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
                         +IY LC + R+DEA+ L ++ MR     PD   + ++I  LC   +
Sbjct: 408 SAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQE-MRSQGCNPDICSYNTIIYHLCNNEQ 466

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           +  A  + E ++ + +  +   Y+++I AL + GR  +   + KEM   GC  + V+YN 
Sbjct: 467 MEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNG 526

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           LI   CK+ + + +  +L+EM +KG K N +SYN+++  LCK+
Sbjct: 527 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKE 569



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 154/301 (51%), Gaps = 16/301 (5%)

Query: 45  YNLLHYDLIITKLGR----AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           Y++L + L   KLGR     ++  EM++            P  + +  V+  + +  + +
Sbjct: 349 YSILMHGL--CKLGRISSAVRLLREMEK--------KGFAPNVVTYTIVLHSFCKNGMWD 398

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
               + +EMS+  + +  + +N ++      G++D    L Q M  +  +PD CSYN +I
Sbjct: 399 DTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTII 458

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +    + ++E+A  +F+ +++  +    +T+ T+I+ L  + R  +A++L ++++ ++  
Sbjct: 459 YHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMI-LHGC 517

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
             D   +  LIK +C  G +  +L + EEM    I+ +   Y+ LIS L K  R  +   
Sbjct: 518 SLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALE 577

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + K+M  +G  P+ VTYN LI+G CK     AA  +L+++ ++    + I+YN+++   C
Sbjct: 578 LSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHC 637

Query: 340 K 340
           K
Sbjct: 638 K 638



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 138/295 (46%), Gaps = 6/295 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+++++ L RA    +   +  ++ H  R+ P    F        R      AL +   M
Sbjct: 142 YNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRANEALALLRGM 201

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
           +          + T+++     G +     L  +++    + D  +++ ++ G     R+
Sbjct: 202 ARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRV 261

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A ++ D M+ +   P ++T+G L+ GLC   + DEA  +   +  +  V     +F +
Sbjct: 262 REAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVV-----LFNT 316

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I G  A G+L+ A  + E M     + DA  YS L+  L K GR +    +L+EM+++G
Sbjct: 317 VIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKG 376

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             PN VTY  ++  FCK   ++    +L+EM  KG   N   YN ++  LCKDG+
Sbjct: 377 FAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGR 431



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 123/255 (48%), Gaps = 5/255 (1%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV 148
           V G  G  R+ E A ++ D M +      V  +  LL       + D  + +   + +  
Sbjct: 252 VRGMCGLGRVREAA-RLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPEL- 309

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
             +   +N +I GC+   +L +A ++++ M  +  QP   T+  L++GLC   R+  A++
Sbjct: 310 --NVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVR 367

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           L  + M      P+   +  ++   C  G       + EEM    + +++  Y+ +I AL
Sbjct: 368 LLRE-MEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYAL 426

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K GR +E   +++EM+ +GC P+  +YN +I   C  E  E A  + + + ++G  AN 
Sbjct: 427 CKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANG 486

Query: 329 ISYNVILGGLCKDGK 343
           I+YN I+  L +DG+
Sbjct: 487 ITYNTIIHALLRDGR 501



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 133/278 (47%), Gaps = 3/278 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  N++ Y +++    +  M+D+ + +L ++      +  +     +       R+ +
Sbjct: 375 KGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRM-D 433

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILI 159
            A+ +  EM S      +  +NT++       +++  + +F+ ++E+ V  +  +YN +I
Sbjct: 434 EAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTII 493

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           H  +   R +DA ++  EM+       +V++  LI  +C +  VD +L L E+ M    +
Sbjct: 494 HALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEE-MAEKGI 552

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           KP+   +  LI  LC    +  AL + ++M+   +  D   Y++LI+ L K G  +    
Sbjct: 553 KPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALN 612

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           +L+++      P+ +TYN LIS  CK    + A  +L+
Sbjct: 613 LLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLN 650


>gi|15228104|ref|NP_181260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216851|sp|Q9ZUU3.1|PP190_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37230
 gi|4056478|gb|AAC98044.1| unknown protein [Arabidopsis thaliana]
 gi|28973644|gb|AAO64144.1| unknown protein [Arabidopsis thaliana]
 gi|110736716|dbj|BAF00321.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254276|gb|AEC09370.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 757

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 156/315 (49%), Gaps = 15/315 (4%)

Query: 38  HPLKPFRYN----LLHYDLIITKLGRAKMFDEMQQILHQ----LKHDTRIVP-KEIIFCN 88
           H L+ FR+     L+ +D   T +   KM  E+ ++ H     L    + VP  E +F  
Sbjct: 132 HALQFFRWTERSGLIRHDRD-THMKMIKMLGEVSKLNHARCILLDMPEKGVPWDEDMFVV 190

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKY 147
           +I  YG+A +++ ++++F +M    V+ T+K +N+L    L  G+    K  F +++ + 
Sbjct: 191 LIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEG 250

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           V P   +YN+++ G  +S RLE A + F++M  R + P   TF T+I G C   ++DEA 
Sbjct: 251 VEPTRHTYNLMLWGFFLSLRLETALRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAE 310

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           KL  + M+   + P    + ++IKG  AV  +   L + EEM    IE +A  YS+L+  
Sbjct: 311 KLFVE-MKGNKIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPG 369

Query: 268 LFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
           L  AG+  E   ILK M  +   P  NS+    L+S   K  D  AA  +L  M      
Sbjct: 370 LCDAGKMVEAKNILKNMMAKHIAPKDNSIFLKLLVSQ-SKAGDMAAATEVLKAMATLNVP 428

Query: 326 ANPISYNVILGGLCK 340
           A    Y V++   CK
Sbjct: 429 AEAGHYGVLIENQCK 443



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 121/263 (46%), Gaps = 15/263 (5%)

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVS 149
           GF+   RL E AL+ F++M +  +      FNT++N      K+D  ++LF  M+   + 
Sbjct: 264 GFFLSLRL-ETALRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIG 322

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P   SY  +I G +   R++D  ++F+EM    ++P   T+ TL+ GLC   ++ EA  +
Sbjct: 323 PSVVSYTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNI 382

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            +++M  +    D  +F  L+      G+++ A  V + M    +  +AG Y  LI    
Sbjct: 383 LKNMMAKHIAPKDNSIFLKLLVSQSKAGDMAAATEVLKAMATLNVPAEAGHYGVLIENQC 442

Query: 270 KAGRKN----------EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           KA   N          E   IL+       +P++  YN +I   C       A  +  ++
Sbjct: 443 KASAYNRAIKLLDTLIEKEIILRHQDTLEMEPSA--YNPIIEYLCNNGQTAKAEVLFRQL 500

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
             +G + +  + N ++ G  K+G
Sbjct: 501 MKRGVQ-DQDALNNLIRGHAKEG 522



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 137/306 (44%), Gaps = 15/306 (4%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++ +I    R K  DE +++  ++K + +I P  + +  +I  Y     ++  L++F+EM
Sbjct: 293 FNTMINGFCRFKKMDEAEKLFVEMKGN-KIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEM 351

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRL 168
            S  ++     ++TLL      GK+   K + + +M K+++P   S  I +   V   + 
Sbjct: 352 RSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKHIAPKDNS--IFLKLLVSQSKA 409

Query: 169 ED---AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL------KEDIMRVYN- 218
            D   A +V   M    +      +G LI   C     + A+KL      KE I+R  + 
Sbjct: 410 GDMAAATEVLKAMATLNVPAEAGHYGVLIENQCKASAYNRAIKLLDTLIEKEIILRHQDT 469

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           ++ +   +  +I+ LC  G+ + A  +  ++++  ++ D    ++LI    K G  +   
Sbjct: 470 LEMEPSAYNPIIEYLCNNGQTAKAEVLFRQLMKRGVQ-DQDALNNLIRGHAKEGNPDSSY 528

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            ILK M  RG    S  Y  LI  +  + +   A T LD M + G   +   +  ++  L
Sbjct: 529 EILKIMSRRGVPRESNAYELLIKSYMSKGEPGDAKTALDSMVEDGHVPDSSLFRSVIESL 588

Query: 339 CKDGKC 344
            +DG+ 
Sbjct: 589 FEDGRV 594



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 62/137 (45%)

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
           +++ AL+      R   ++ D      +IK L  V +L+ A  +  +M    +  D  ++
Sbjct: 129 KLEHALQFFRWTERSGLIRHDRDTHMKMIKMLGEVSKLNHARCILLDMPEKGVPWDEDMF 188

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
             LI +  KAG   E   I ++MK+ G +    +YN+L     +   +  A    ++M  
Sbjct: 189 VVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVS 248

Query: 322 KGCKANPISYNVILGGL 338
           +G +    +YN++L G 
Sbjct: 249 EGVEPTRHTYNLMLWGF 265


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 138/264 (52%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +I+  +I    +   +E+A  +F EM  F +      +  L++     G   +  E+
Sbjct: 196 PNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEM 255

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           ++ M E  V P+  +YN +++      R +DA+K+FDEM +R +   +VT+ TLI GLC 
Sbjct: 256 YEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCR 315

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E++ +EA K+  D M+   + P+   + +LI G C VG+L  AL +  ++    +     
Sbjct: 316 EMKANEANKVM-DQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLV 374

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+ L+S   K G  +    ++KEM+ERG KP+ +TY  LI  F + ++ E A  +   M
Sbjct: 375 TYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPM 434

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
            + G   +  +Y+V++ G C  G+
Sbjct: 435 EELGLTPDVHTYSVLIHGFCIKGQ 458



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 129/238 (54%), Gaps = 2/238 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           +E++  +  E+  F     V  + TL++     G++++ K+LF  M K+ +  +  +Y +
Sbjct: 179 IEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTV 238

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LIHG   +   +  ++++++M +  + P L T+  ++   C + R  +A KL ++ MR  
Sbjct: 239 LIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDE-MRER 297

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            V  +   + +LI GLC   + + A  V ++M  D I  +   Y++LI      G+  + 
Sbjct: 298 GVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKA 357

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
            ++ +++K RG  P+ VTYN L+SGFCK+ D   A  ++ EM ++G K + I+Y +++
Sbjct: 358 LSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILI 415



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 118/226 (52%), Gaps = 3/226 (1%)

Query: 119 KFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           + +  ++N  +    LD     F ++++K   P +  +N L+   V S      W+ F+E
Sbjct: 95  RLYEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNE 154

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
             K ++   + +FG +I G C    ++++  L  + +R +   P+  ++ +LI G C  G
Sbjct: 155 -SKIKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVE-LREFGFSPNVVIYTTLIDGCCKRG 212

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           E+  A  +  EM +  +  +   Y+ LI  LFK G K +   + ++M+E G  PN  TYN
Sbjct: 213 EIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYN 272

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +++  CK+   + AF + DEM ++G   N ++YN ++GGLC++ K
Sbjct: 273 CVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMK 318



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 143/298 (47%), Gaps = 19/298 (6%)

Query: 46  NLLHYDLIIT---KLGRAK----MFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRAR 97
           NL  Y+ ++    K GR K    +FDEM++         R V   I+  N +IG   R  
Sbjct: 267 NLYTYNCVMNQHCKDGRTKDAFKLFDEMRE---------RGVSCNIVTYNTLIGGLCREM 317

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYN 156
               A ++ D+M S  +   +  +NTL++     GKL +   L + +  + +SP   +YN
Sbjct: 318 KANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYN 377

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           IL+ G         A KV  EM +R ++P+ +T+  LI        +++A++L+   M  
Sbjct: 378 ILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSP-MEE 436

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             + PD   ++ LI G C  G+++ A  + + MV  K+E +  IY++++    K G    
Sbjct: 437 LGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYR 496

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
              + +EM+E+   PN  +Y  +I   CKE   + A  ++++M D G   +    N+I
Sbjct: 497 ALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPSDSILNLI 554



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 2/243 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           A ++FDEM    V   +  +NTL+       K +   ++  Q+    ++P+  +YN LI 
Sbjct: 287 AFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLID 346

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     +L  A  +  ++  R L P+LVT+  L+ G C +     A K+ ++ M    +K
Sbjct: 347 GFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKE-MEERGIK 405

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P    +  LI     +  +  A+ ++  M    +  D   YS LI      G+ NE   +
Sbjct: 406 PSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRL 465

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            K M  +  +PN V YN ++ G+CKE     A  +  EM +K    N  SY  ++  LCK
Sbjct: 466 FKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCK 525

Query: 341 DGK 343
           + K
Sbjct: 526 ERK 528


>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 917

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 150/312 (48%), Gaps = 21/312 (6%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGR--------AKMFDEMQQILHQLKHDTRIVPKEI 84
           N  + + L+P   NL+ Y+ +I   G+        AK FDEMQ+   Q        P  I
Sbjct: 292 NSMKEYGLRP---NLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQ--------PDRI 340

Query: 85  IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQI 143
            F +++    R  L E A  +FDEMS+  ++  V  +NTLL+     G++D   E L Q+
Sbjct: 341 TFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQM 400

Query: 144 MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
             K + P+  SY+ +I G   + R ++A  +F EM    +    V++ TL+       R 
Sbjct: 401 PAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRS 460

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
           +EAL +  ++  V  +K D   + +L+ G    G+      V  EM R+ +  +   YS+
Sbjct: 461 EEALDILREMASV-GIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYST 519

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LI    K G   E   + +E K  G + + V Y+ALI   CK     +A +++DEM  +G
Sbjct: 520 LIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEG 579

Query: 324 CKANPISYNVIL 335
              N ++YN I+
Sbjct: 580 ISPNVVTYNSII 591



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 143/295 (48%), Gaps = 4/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL-LERALQMFDE 108
           +  +I+  GR+ + +E   + + +K +  + P  + +  VI   G+  +  ++  + FDE
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMK-EYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDE 329

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRR 167
           M    VQ     FN+LL      G  +  + LF  M  + +  D  SYN L+       +
Sbjct: 330 MQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQ 389

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           ++ A+++  +M  +R+ P +V++ T+I G     R DEAL L  + MR  N+  D   + 
Sbjct: 390 MDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGE-MRYLNIALDRVSYN 448

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +L+     VG    AL +  EM    I+ D   Y++L+    K G+ +E   +  EMK  
Sbjct: 449 TLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKRE 508

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
              PN +TY+ LI G+ K   ++ A  +  E    G +A+ + Y+ ++  LCK+G
Sbjct: 509 HVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNG 563



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 126/258 (48%), Gaps = 6/258 (2%)

Query: 88  NVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY 147
           + +G YG+  + +R   +F+   S     TV  F+ L++     G  +    +F  M++Y
Sbjct: 241 STLGRYGKVTIAKR---IFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEY 297

Query: 148 -VSPDACSYNILIHGCVVS-RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
            + P+  +YN +I  C       +   K FDEM +  +QP  +TF +L+  +C    + E
Sbjct: 298 GLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLL-AVCSRGGLWE 356

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           A +   D M    ++ D   + +L+  +C  G++ LA  +  +M   +I  +   YS++I
Sbjct: 357 AARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVI 416

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
               KAGR +E   +  EM+      + V+YN L+S + K    E A  IL EM   G K
Sbjct: 417 DGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIK 476

Query: 326 ANPISYNVILGGLCKDGK 343
            + ++YN +LGG  K GK
Sbjct: 477 KDVVTYNALLGGYGKQGK 494



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 132/303 (43%), Gaps = 24/303 (7%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           P K    N++ Y  +I    +A  FDE   +  ++++   I    + +  ++  Y +   
Sbjct: 401 PAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRY-LNIALDRVSYNTLLSIYTKVGR 459

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNI 157
            E AL +  EM+S  ++  V  +N LL      GK D +K++F  M++ +V P+  +Y+ 
Sbjct: 460 SEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYST 519

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G       ++A +VF E     L+  +V +  LI  LC    V  A+ L +++ +  
Sbjct: 520 LIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTK-E 578

Query: 218 NVKPDGQVFASLIK--GLCAVGELSL------ALGVKEEMVRDKIEMDAGIYSSLISALF 269
            + P+   + S+I   G  A  E S       +L      + +  E +      L   L 
Sbjct: 579 GISPNVVTYNSIIDAFGRSATMERSADYSNGGSLPFSSSALSELTETEGNRVIQLFGQLT 638

Query: 270 KAGRK----------NEFPAIL---KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
             G             E   IL   ++M +   KPN VT++A+++   +   FE A  +L
Sbjct: 639 SEGNNRMTKDCKEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLL 698

Query: 317 DEM 319
           +E+
Sbjct: 699 EEL 701



 Score = 40.8 bits (94), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 2/116 (1%)

Query: 229 LIKGLCAVGELSLALGVKEEMV-RDKIEMDAG-IYSSLISALFKAGRKNEFPAILKEMKE 286
           +I+ L   GE   A+G  E  V R++ + + G + S++IS L + G+      I +    
Sbjct: 202 IIRELGNRGECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIFETAFS 261

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            G       ++ALIS + +    E A ++ + M + G + N ++YN ++    K G
Sbjct: 262 GGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGG 317


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 130/264 (49%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  +I   G+     +A+++FD+M +   Q     + T++N     G+      L
Sbjct: 43  PTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGL 102

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ ME+     +  +Y+ LIH     RR+ +A  +F  M  + + PT+ T+ +LI GLC 
Sbjct: 103 FKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCN 162

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R  EA  L  + M   N+ P+   F  L+   C  G++  A GV + M    +E D  
Sbjct: 163 FSRWKEASALLNE-MTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVV 221

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+SL+          E   +   M  +GCKP+  +Y+ LI+G+CK +  + A  + +EM
Sbjct: 222 TYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEM 281

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             +G   N +SYN ++ GLC+ G+
Sbjct: 282 IHQGSTPNNVSYNTLIHGLCQLGR 305



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 110/196 (56%), Gaps = 1/196 (0%)

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           +SP+ C+ NILI+     +R++  + V  + +K  LQPT+VTF TLI GL    +  +A+
Sbjct: 6   LSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAV 65

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           +L +D M     +PD   + ++I GLC +GE +LA G+ ++M     +++   YS+LI +
Sbjct: 66  ELFDD-MVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHS 124

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L K  R NE   I   MK +   P   TY +LI G C    ++ A  +L+EM       N
Sbjct: 125 LCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPN 184

Query: 328 PISYNVILGGLCKDGK 343
            +++NV++   CK+GK
Sbjct: 185 VVTFNVLVDTFCKEGK 200



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 146/293 (49%), Gaps = 3/293 (1%)

Query: 47  LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMF 106
           +  Y  +I  L     + E   +L+++     I+P  + F  ++  + +   +  A  + 
Sbjct: 150 IFTYTSLIQGLCNFSRWKEASALLNEMT-SLNIMPNVVTFNVLVDTFCKEGKVLAAEGVL 208

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVS 165
             M+   V+  V  +N+L+       ++   ++LF +M  K   PD  SY+ILI+G   +
Sbjct: 209 KTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKA 268

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
           +R+++A ++F+EM+ +   P  V++ TLI+GLC   R+ EA  L +++    N+ P+   
Sbjct: 269 KRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNL-PNLYT 327

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           +A L+ G C  G L  A  +   M    ++ +  +Y+ L++A+ K+G   +   +  E+ 
Sbjct: 328 YAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELF 387

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             G +PN   Y  +I+G CKE   + A      M D GC  +  SYNVI+ G 
Sbjct: 388 VIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGF 440



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 142/298 (47%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L + +  +E   I   +K    I P    + ++I         + A  +
Sbjct: 114 NVVTYSTLIHSLCKYRRVNEALDIFSYMKAK-DISPTIFTYTSLIQGLCNFSRWKEASAL 172

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            +EM+S N+   V  FN L++     GK+   + + + M E  V PD  +YN L++G  +
Sbjct: 173 LNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSM 232

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              + +A K+FD M+ +  +P + ++  LI G C   R+DEA +L  +++      P+  
Sbjct: 233 WTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIH-QGSTPNNV 291

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI GLC +G L  A  + + M  +    +   Y+ L+    K G   +   + + M
Sbjct: 292 SYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAM 351

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +    KPN V YN L++  CK  + + A  +  E+   G + N   Y  I+ GLCK+G
Sbjct: 352 QSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEG 409



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 2/228 (0%)

Query: 114 VQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAW 172
           +Q T+  F TL+N     GK  +  ELF  M  +   PD  +Y  +I+G         A 
Sbjct: 41  LQPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAA 100

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
            +F +M +   Q  +VT+ TLI+ LC   RV+EAL +    M+  ++ P    + SLI+G
Sbjct: 101 GLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFS-YMKAKDISPTIFTYTSLIQG 159

Query: 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
           LC       A  +  EM    I  +   ++ L+    K G+      +LK M E G +P+
Sbjct: 160 LCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPD 219

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            VTYN+L+ G+    +   A  + D M  KGCK +  SY++++ G CK
Sbjct: 220 VVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCK 267



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 119/234 (50%), Gaps = 4/234 (1%)

Query: 93  YGRARLLE--RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVS 149
           YG +   E   A ++FD M +   +  V  ++ L+N      ++D  K+LF +++ +  +
Sbjct: 228 YGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGST 287

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P+  SYN LIHG     RL +A  +F  M      P L T+  L+ G C +  + +A +L
Sbjct: 288 PNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRL 347

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
              +   Y +KP+  ++  L+  +C  G L  A  +  E+    ++ +  IY+++I+ L 
Sbjct: 348 FRAMQSTY-LKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLC 406

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           K G  +E     + M++ GC P+  +YN +I GF + +D   A  ++ EM D+G
Sbjct: 407 KEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRG 460



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 64/127 (50%)

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M +  + P+      LI   C +  + L   V  + ++  ++     +++LI+ L K G+
Sbjct: 1   MELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGK 60

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             +   +  +M  RGC+P+  TY  +I+G CK  +   A  +  +M + GC+ N ++Y+ 
Sbjct: 61  FAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYST 120

Query: 334 ILGGLCK 340
           ++  LCK
Sbjct: 121 LIHSLCK 127


>gi|255660890|gb|ACU25614.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 484

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 166/325 (51%), Gaps = 15/325 (4%)

Query: 31  NPNDTEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVP 81
           + + T  H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +  
Sbjct: 20  HSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEW 78

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
            E ++  +I  YG+  +++ +++MF +M    V+ T+K +N L    L  G+    K  F
Sbjct: 79  DEDMWVMMIDSYGKQGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYF 138

Query: 142 -QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
            +++ + + P   ++N++I G  +S ++E A + F++M  R + P +VT+ T+I G    
Sbjct: 139 NKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRV 198

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            +++EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  
Sbjct: 199 KKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAIT 257

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDE 318
           YS+L+  L  A + +E   ILKEM ++   P  NS+ +  LIS  CK  + +AA  +L  
Sbjct: 258 YSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSI-FMRLISSHCKSGNLDAAADVLKA 316

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M           Y V++   CK G+
Sbjct: 317 MVRLSVPTEAGHYGVLIENFCKAGQ 341



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 130/263 (49%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F++M S  +   V  +NT++N      K++  ++ F  M+ + 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   +++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + +++M  Y    D  +F  LI   C  G L  A  V + MVR  +  +AG Y  LI  
Sbjct: 276 VILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMVRLSVPTEAGHYGVLIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             KAG+ ++   +L ++ E+    +P S        YN +I   C       A T++ ++
Sbjct: 336 FCKAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQAAKAETLVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +P + N ++ G  ++G
Sbjct: 396 LKLGVQ-DPTALNTLIRGHSQEG 417



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 135/300 (45%), Gaps = 24/300 (8%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D ++  + P   +++ Y+ +I    R K  +E ++   ++K    I P  + +  +I  Y
Sbjct: 175 DMKSREISP---DVVTYNTMINGYYRVKKMEEAEKYFVEMK-GRNIEPTVVTYTTLIKGY 230

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSP-D 151
                ++ AL++ +EM  F ++     ++TLL       K+   + +  ++M+KY++P D
Sbjct: 231 VSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-- 209
              +  LI     S  L+ A  V   MV+  +      +G LI   C   + D+A+KL  
Sbjct: 291 NSIFMRLISSHCKSGNLDAAADVLKAMVRLSVPTEAGHYGVLIENFCKAGQYDKAVKLLD 350

Query: 210 ----KEDIMR---VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM---DAG 259
               K+ I+R     +++P    +  +I+ LC  G+ + A    E +VR  +++   D  
Sbjct: 351 KLIEKDIILRPQSTLHLEPSA--YNPMIEYLCNNGQAAKA----ETLVRQLLKLGVQDPT 404

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             ++LI    + G  +    +LK M  R        YN+L+  + K+ +   A   LD M
Sbjct: 405 ALNTLIRGHSQEGSPDSXFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPADAKAALDSM 464


>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 418

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 131/244 (53%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y R   L+   ++   M +  VQ  V  ++ L+N      K+D   E+
Sbjct: 169 PSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEM 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
             ++++  + P+  ++  LI G   + +++ A +++ +M+ +   P L+T+ TLIYGLC 
Sbjct: 229 LNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCR 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
              + +A  L E+ M +  +KPD   + +LI G C  G+L +   +++ M+R+ I +D  
Sbjct: 289 RGDLGQARDLVEE-MIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP++ TY  +++ FCK  D + A  +L EM
Sbjct: 348 TYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLLREM 407

Query: 320 GDKG 323
              G
Sbjct: 408 QRNG 411



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 126/228 (55%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
             M    +QP + T+  LI GLC E ++DEA ++  +++    + P+G  F +LI G C 
Sbjct: 195 SAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLD-NGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G++ LA+ + ++M+      D   Y++LI  L + G   +   +++EM  +G KP+ +T
Sbjct: 254 NGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E  F +   M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGR 361



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/267 (31%), Positives = 135/267 (50%), Gaps = 9/267 (3%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ ++++ +V  FNTL+N  +  G LD 
Sbjct: 133 PPSLYFFNILMHRFCKEGEMRL---AQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M    V PD  +Y++LI+G     ++++A ++ +EM+   L P  VTF TLI 
Sbjct: 190 GFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   +VD A+++ + ++      PD   + +LI GLC  G+L  A  + EEM+   ++
Sbjct: 250 GHCKNGKVDLAMEIYKQMLS-QGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLK 308

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI    K G       + K M     + + VTY ALISG C+E     A  +
Sbjct: 309 PDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKM 368

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
           L EM   G K +  +Y +I+   CK G
Sbjct: 369 LREMLTVGLKPDNGTYTMIMNEFCKTG 395



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 105/201 (52%), Gaps = 1/201 (0%)

Query: 142 QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
           +I+E    P    +NIL+H       +  A  VFD + K  L+P++V+F TL+ G     
Sbjct: 126 EILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLG 185

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
            +DE  +LK   M    V+PD   ++ LI GLC   ++  A  +  EM+ + +  +   +
Sbjct: 186 DLDEGFRLKS-AMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTF 244

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           ++LI    K G+ +    I K+M  +G  P+ +TYN LI G C+  D   A  +++EM  
Sbjct: 245 TTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIM 304

Query: 322 KGCKANPISYNVILGGLCKDG 342
           KG K + I+Y  ++ G CK+G
Sbjct: 305 KGLKPDKITYTTLIDGSCKEG 325



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 109/222 (49%), Gaps = 2/222 (0%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           H T + P    +  +I    +   ++ A +M +EM    +      F TL++     GK+
Sbjct: 198 HATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKV 257

Query: 135 DRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           D   E++ Q++ +   PD  +YN LI+G      L  A  + +EM+ + L+P  +T+ TL
Sbjct: 258 DLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTL 317

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G C E  ++   +L++ ++R  N++ D   + +LI GLC  G    A  +  EM+   
Sbjct: 318 IDGSCKEGDLEITFELRKRMIR-ENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVG 376

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
           ++ D G Y+ +++   K G       +L+EM+  G  P  VT
Sbjct: 377 LKPDNGTYTMIMNEFCKTGDVKTASKLLREMQRNGPVPGVVT 418



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 108/225 (48%), Gaps = 6/225 (2%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEK---YVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           F+ L+   L  G +    + F++ +K   +V  D C   +L H  +  R     W  + E
Sbjct: 69  FSGLMLAYLESGFVRDAIQCFRLTKKHKIWVPFDTCR-KVLEH-LMKLRYFRLVWGFYKE 126

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           +++    P+L  F  L++  C E  +  A ++  D +  ++++P    F +L+ G   +G
Sbjct: 127 ILECGYPPSLYFFNILMHRFCKEGEMRLA-QMVFDAITKWSLRPSVVSFNTLMNGYIRLG 185

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           +L     +K  M    ++ D   YS LI+ L K  + +E   +L EM + G  PN VT+ 
Sbjct: 186 DLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFT 245

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            LI G CK    + A  I  +M  +G   + I+YN ++ GLC+ G
Sbjct: 246 TLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRG 290



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 62/123 (50%)

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P    F  L+   C  GE+ LA  V + + +  +      +++L++   + G  +E   +
Sbjct: 134 PSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRL 193

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
              M   G +P+  TY+ LI+G CKE   + A  +L+EM D G   N +++  ++ G CK
Sbjct: 194 KSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCK 253

Query: 341 DGK 343
           +GK
Sbjct: 254 NGK 256


>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 418

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 135/289 (46%), Gaps = 42/289 (14%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ + ++ +V  FNTL+N  +  G LD 
Sbjct: 133 PASLYFFNILMHXFCKEGEIRL---AQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L  +M+   V PD  +Y++LI+G     +++DA ++FDEM+   L P  VTF TLI 
Sbjct: 190 GFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLID 249

Query: 196 GLCLELRVDEALKLKE----------------------------------DIMRVYNVKP 221
           G C   RVD A+++                                    D M +  +KP
Sbjct: 250 GHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKP 309

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +LI G C  G+L  A   ++ M+++ I  D   Y++LIS L + GR  +   +L
Sbjct: 310 DKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKML 369

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
           +EM   G KP   TY  +I+  CK+ D      +L EM   G   N ++
Sbjct: 370 REMLSVGLKPEIGTYTMIINEXCKKGDVWTGSKLLKEMQRXGYVPNVVT 418



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 123/228 (53%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
             M    + P + T+  LI GLC E ++D+A +L ++++    + P+   F +LI G C 
Sbjct: 195 SVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLB-NGLVPNXVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ +  +M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 254 NGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGR 361



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 53/115 (46%)

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I+ L  +    L  G  EE +          ++ L+    K G      ++   + + G
Sbjct: 107 VIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHXFCKEGEIRLAQSVFDSITKWG 166

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +P+ V++N L++G+ K  D +  F +   M   G   +  +Y+V++ GLCK+ K
Sbjct: 167 LRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESK 221


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 151/295 (51%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ ++T L +     +++ +L Q+K ++ + P    +  ++  Y + + L+ A ++ + M
Sbjct: 249 YNTVLTALCKRSQLTQVRDLLLQMK-NSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELM 307

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
           +   +   V  +NT++      GK+D    L   ME + + PD  +YN LI GC   R  
Sbjct: 308 TGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGS 367

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A+K+ +EM  R ++   VT   +I   C E ++DEA  +   ++      PD   + +
Sbjct: 368 DAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVES-GFSPDCFTYNT 426

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I G C  G+++ A  + +EM R  +++D    ++L+  +    + ++   +  + ++RG
Sbjct: 427 MINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRG 486

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              + VTY  LI G+ K+E  + A  + +EM + G  A  I+YN I+ GLC  GK
Sbjct: 487 YILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGK 541



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 142/301 (47%), Gaps = 7/301 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + ++++I         DE   ++ ++  ++   P    +  +I  Y +A  +  A +M
Sbjct: 385 NGVTHNIMIKWFCTEGKIDEASNVMVKMV-ESGFSPDCFTYNTMINGYCKAGKMAEAYKM 443

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYNILIHGCV 163
            DEM    +++     NTLL+      +LD    L     K  Y+  D  +Y  LI G  
Sbjct: 444 MDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYI-LDEVTYGTLIMGYF 502

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL-KLKEDIMRVYNVKPD 222
              + + A K+++EM +  +  T++T+ T+I GLCL  + D+A+ KL E + +   + PD
Sbjct: 503 KDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEK--GLVPD 560

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
                 +I G C  G +  A     +MV   ++ D    + L+  L + G   +   +  
Sbjct: 561 ESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFN 620

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
               +G   ++VTYN +IS FCKE   E AF ++ EM  K  + +  +YN I+ GL K G
Sbjct: 621 TWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAG 680

Query: 343 K 343
           +
Sbjct: 681 R 681



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 117/241 (48%), Gaps = 2/241 (0%)

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
           ++F +     VQ  V  FN L++   +    +    L   M +Y   PD  +YN ++   
Sbjct: 197 EVFQDAVKLGVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTAL 256

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
               +L     +  +M    L P   T+  L++G C    + EA ++ E +M    + PD
Sbjct: 257 CKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIE-LMTGKGMLPD 315

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + ++++GLC  G++  A+ ++++M   K+  D   Y++LI   F+    +    +++
Sbjct: 316 VWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVE 375

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           EMK RG K N VT+N +I  FC E   + A  ++ +M + G   +  +YN ++ G CK G
Sbjct: 376 EMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAG 435

Query: 343 K 343
           K
Sbjct: 436 K 436



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 133/303 (43%), Gaps = 51/303 (16%)

Query: 83  EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELF 141
           E+ +  +I  Y +    +RAL++++EM    +  T+  +NT++      GK D+ + +L 
Sbjct: 491 EVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLN 550

Query: 142 QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL-------------- 187
           +++EK + PD  + NI+IHG      +E A++  ++MV+  L+P +              
Sbjct: 551 ELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREG 610

Query: 188 ---------------------VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
                                VT+  +I   C E R+++A  L  + M   N++PD   +
Sbjct: 611 MLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTE-MEGKNLEPDRYTY 669

Query: 227 ASLIKGLCAVG------ELSLALGVKEEMVRDK-----IEMDAGIYSSLISALFKAGRKN 275
            +++ GL   G      +L+L    K + V+ +     +     +YS  IS+L   G+  
Sbjct: 670 NAIVTGLTKAGRTEEAEKLALKFAEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYK 729

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK---ANPISYN 332
           +   + ++ +++G   N  TY  L+ G  K        ++L  M     +    NP+ Y 
Sbjct: 730 DAMKLFQQAEQKGVSLNKYTYIKLMDGLLKRRKSFTTTSLLPFMVSATIQFFDRNPMRYA 789

Query: 333 VIL 335
            IL
Sbjct: 790 HIL 792



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 93/184 (50%), Gaps = 4/184 (2%)

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR---VYNV 219
           V+S++     ++F++M + R +P L+T  TL+  L +      +L    ++ +      V
Sbjct: 149 VISKQPHLGHQIFNKMKRLRFRPNLLTCNTLLNAL-VRSNSSHSLVFSREVFQDAVKLGV 207

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +P+   F  LI G C+      AL +  +M       D   Y+++++AL K  +  +   
Sbjct: 208 QPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRD 267

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +L +MK  G  PN  TYN L+ G+CK +  + A  +++ M  KG   +  +YN ++ GLC
Sbjct: 268 LLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLC 327

Query: 340 KDGK 343
            +GK
Sbjct: 328 DEGK 331


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 129/265 (48%), Gaps = 2/265 (0%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           VP    F  VI F  +   L  A  +F  M +      V  +N+L++    CG L+ +++
Sbjct: 197 VPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQ 256

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L   M K   + D  +YN LI+      R+E A+  F EM ++ +   +VTF T +   C
Sbjct: 257 LVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFC 316

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
            E  V EA+KL    MRV  + P+   + SL+ G C  G L  A+ + +EMV   +  + 
Sbjct: 317 KEGLVQEAMKLFAQ-MRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNV 375

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y+ ++  L K G+  E   +L  M+  G K N + Y  LI G     + E A  +L++
Sbjct: 376 VTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQ 435

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M +KG + +   Y  ++ GLCKD K
Sbjct: 436 MKNKGMELDVSLYGTLIWGLCKDQK 460



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 160/333 (48%), Gaps = 36/333 (10%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I   G+    +E++Q++ +++  +      + +  +I  + +   +E+A   
Sbjct: 234 DVVTYNSLIDGYGKCGDLEEVEQLVSEMR-KSGCAADVVTYNALINCFSKFGRMEKAYSY 292

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           F EM    V   V  F+T ++     G +    +LF Q+  + + P+  +Y  L+ G   
Sbjct: 293 FGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCK 352

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA---LKLKE---------- 211
           + RL+DA  + DEMV + L P +VT+  ++ GLC E +V EA   L L E          
Sbjct: 353 AGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELL 412

Query: 212 ---------------------DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
                                + M+   ++ D  ++ +LI GLC   ++  A  +  +M 
Sbjct: 413 YTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMA 472

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
              +  +  IY++++ ALFKAG+++E  A+L ++ + G +PN VTY ALI G CK     
Sbjct: 473 GCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSIS 532

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            A +  ++M + G   N  +Y  ++ G CK G 
Sbjct: 533 EAISHFNKMRELGLDPNVQAYTALIDGFCKIGS 565



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 144/296 (48%), Gaps = 3/296 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ +   +    +  +  E  ++  Q++    ++P E  + +++    +A  L+ A+ +
Sbjct: 304 NVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRG-MMPNEFTYTSLVDGTCKAGRLDDAIVL 362

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            DEM    +   V  +  +++     GK+     +  +ME+  V  +   Y  LIHG  +
Sbjct: 363 LDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFM 422

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +   E A  + ++M  + ++  +  +GTLI+GLC + +VDEA  L    M    ++P+  
Sbjct: 423 NNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHK-MAGCGLRPNTV 481

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++ +++  L   G+ S A+ +  +++    + +   Y +LI  L KAG  +E  +   +M
Sbjct: 482 IYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKM 541

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +E G  PN   Y ALI GFCK      A  +++EM DKG   + + Y  ++ G  K
Sbjct: 542 RELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMK 597



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 133/291 (45%), Gaps = 3/291 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y +++  L +     E   +L  L     +   E+++  +I  +      ERAL +
Sbjct: 374 NVVTYTVMVDGLCKEGKVAEADNVL-SLMERGGVKANELLYTTLIHGHFMNNNSERALDL 432

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVV 164
            ++M +  +++ V  + TL+       K+D  K L   M    + P+   Y  ++     
Sbjct: 433 LNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFK 492

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + +  +A  +  +++    QP +VT+  LI GLC    + EA+    + MR   + P+ Q
Sbjct: 493 AGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAIS-HFNKMRELGLDPNVQ 551

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G C +G L+ A+ +  EM+   + +D  +Y+SLI    K     +  A+  +M
Sbjct: 552 AYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKM 611

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
            E G + +   Y   ISGFC     + A  +L EM   G   +   YN ++
Sbjct: 612 IESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLI 662



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 100/238 (42%), Gaps = 3/238 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L + +  DE + +LH++     + P  +I+  ++    +A     A+ +  ++
Sbjct: 448 YGTLIWGLCKDQKVDEAKSLLHKMA-GCGLRPNTVIYTTIMDALFKAGKESEAVALLHKI 506

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
                Q  V  +  L++     G +      F  M E  + P+  +Y  LI G      L
Sbjct: 507 LDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSL 566

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
             A  + +EM+ + +    V + +LI G   +  + +A  LK  ++    ++ D   +  
Sbjct: 567 NKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIE-SGLQLDLYCYTC 625

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
            I G C +  +  A GV  EM+   I  D  +Y+ LI    K G   E  ++  EM+ 
Sbjct: 626 FISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMES 683


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 146/302 (48%), Gaps = 3/302 (0%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  +L+ Y  II  L +        Q+L +++ +    P  + +  VI    + R    A
Sbjct: 172 FAPSLITYTTIIKGLCKIGHTTNALQLLKKME-EKGCKPDVVAYNTVIDSLCKDRRANEA 230

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
           +  F EM    +   V  ++++L+     G+L+    LF Q++ + V P+  ++ IL+ G
Sbjct: 231 MYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDG 290

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 + +A +VF+ M +  ++P   T+  L+ G CL+ ++DEA KL  DIM      P
Sbjct: 291 LCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLF-DIMVGKGFAP 349

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
             +V+  LI G C    L+ A  +  EM    +  D   YS+L+    +AGR      + 
Sbjct: 350 SVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLF 409

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           KEM   G  P+S+TY+ L+ G CK    + AF +L  M +   + +   YN+++ G+C  
Sbjct: 410 KEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNF 469

Query: 342 GK 343
           GK
Sbjct: 470 GK 471



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 157/323 (48%), Gaps = 13/323 (4%)

Query: 21  ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
           ALQL K         E    KP   +++ Y+ +I  L + +  +E      ++  D  I 
Sbjct: 195 ALQLLKK-------MEEKGCKP---DVVAYNTVIDSLCKDRRANEAMYFFSEMV-DQGIP 243

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + + +++  +     L  A  +F +M   NV      F  L++     G +   + +
Sbjct: 244 PNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRV 303

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F++M E  V PDA +Y+ L+ G  +  ++++A K+FD MV +   P++  +  LI G C 
Sbjct: 304 FEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCK 363

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R++EA  L  + M   ++ PD   +++L++G C  G   +A  + +EM    +  D+ 
Sbjct: 364 SRRLNEAKTLLSE-MYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSI 422

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YS L+  L K G  +E   +LK M+E   +P+   YN LI G C     EAA  +   +
Sbjct: 423 TYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNL 482

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
             KG + + ++Y V++ GL K+G
Sbjct: 483 FVKGIQPSVVTYTVMISGLLKEG 505



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 141/298 (47%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  I+         +E   +  Q+     ++P  + F  ++    +  ++  A ++
Sbjct: 245 NVVTYSSILHGFCNLGQLNEATSLFKQMI-GRNVMPNTVTFTILVDGLCKEGMILEARRV 303

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F+ M+   V+     ++ L++      ++D  ++LF IM  K  +P    YNILI+G   
Sbjct: 304 FEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCK 363

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           SRRL +A  +  EM  R L P  VT+ TL+ G C   R   A KL ++ M  Y + PD  
Sbjct: 364 SRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKE-MCSYGLLPDSI 422

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++ L+ GLC  G L  A  + + M   KIE    IY+ LI  +   G+      +   +
Sbjct: 423 TYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNL 482

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             +G +P+ VTY  +ISG  KE     A  +  +M   GC  N  +YNV + G  ++G
Sbjct: 483 FVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNG 540



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 144/291 (49%), Gaps = 3/291 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + + +++  L +  M  E +++   +  +  + P    +  ++  Y     ++ A ++
Sbjct: 280 NTVTFTILVDGLCKEGMILEARRVFEMMTENG-VEPDAYTYSALMDGYCLQSQMDEAQKL 338

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           FD M       +V+ +N L+N      +L+  K L   M ++ ++PD  +Y+ L+ G   
Sbjct: 339 FDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQ 398

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R + A K+F EM    L P  +T+  L+ GLC    +DEA +L +  M+   ++P   
Sbjct: 399 AGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLK-AMQESKIEPHIC 457

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++  LI+G+C  G+L  A  +   +    I+     Y+ +IS L K G  NE   + ++M
Sbjct: 458 IYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKM 517

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
              GC PNS TYN  I GF +  D   A  +++EM  +G  A+  ++ ++L
Sbjct: 518 VVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLL 568



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 142/284 (50%), Gaps = 10/284 (3%)

Query: 60  AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK 119
            K+FDE+ ++           P  I +  +I    +      ALQ+  +M     +  V 
Sbjct: 161 VKLFDEIGKM--------GFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVV 212

Query: 120 FFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
            +NT+++      + +     F +++++ + P+  +Y+ ++HG     +L +A  +F +M
Sbjct: 213 AYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQM 272

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
           + R + P  VTF  L+ GLC E  + EA ++ E +M    V+PD   +++L+ G C   +
Sbjct: 273 IGRNVMPNTVTFTILVDGLCKEGMILEARRVFE-MMTENGVEPDAYTYSALMDGYCLQSQ 331

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           +  A  + + MV         +Y+ LI+   K+ R NE   +L EM +R   P++VTY+ 
Sbjct: 332 MDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYST 391

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           L+ GFC+    + A  +  EM   G   + I+Y+++L GLCK G
Sbjct: 392 LMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHG 435



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 138/287 (48%), Gaps = 4/287 (1%)

Query: 59  RAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV 118
           R+ +F   Q         T I P  I        Y     +  A+  F+++        V
Sbjct: 10  RSFLFFIHQHFTTSTASTTNISPSSITNGGFCSNYNNLHSVADAVASFNQLLGIRPLPPV 69

Query: 119 KFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRR--LEDAWKVF 175
             FN LL   +       +  L + M+   + P+  +  ILI+    S R  +  A+   
Sbjct: 70  VVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSAL 129

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
            +M K  LQPT VTFGTL+ GLC + ++ +A+KL ++I ++    P    + ++IKGLC 
Sbjct: 130 GKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKM-GFAPSLITYTTIIKGLCK 188

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
           +G  + AL + ++M     + D   Y+++I +L K  R NE      EM ++G  PN VT
Sbjct: 189 IGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVT 248

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           Y++++ GFC       A ++  +M  +    N +++ +++ GLCK+G
Sbjct: 249 YSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEG 295



 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE--EDFEAAFTILD 317
           +++ L+ +L K    +   ++ K+M     +PN  T   LI+  C    +    AF+ L 
Sbjct: 71  VFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALG 130

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
           +M   G +   +++  +L GLC   K
Sbjct: 131 KMFKLGLQPTHVTFGTLLNGLCSKAK 156


>gi|255578729|ref|XP_002530223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530270|gb|EEF32170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 127/241 (52%), Gaps = 2/241 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIH 160
           AL  + EM    +   V   N ++      GKL++  ++F+ ME   +SP+  SYN LI 
Sbjct: 200 ALAFYKEMRRCRISPNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIM 259

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G      L  A K+ + M  + ++  +VTF +LI G C E ++ EA K+  + M+V NV 
Sbjct: 260 GYCRKGLLNSAVKLKNSMRAKGVEANVVTFNSLIDGFCKEGKLHEASKVFSE-MKVLNVA 318

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   + +LI G   +G   +   + EEM R+ ++ D   Y++LI  L K G+  +   +
Sbjct: 319 PNTITYNTLINGHSQMGNSEMGRRLYEEMSRNGVKADILTYNALILGLCKEGKTKKAAYM 378

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +KE+ +    PN+ T++ALISG C   + + AF +   M   GC  N  ++N+++   CK
Sbjct: 379 VKELDKENLVPNASTFSALISGQCIRNNSDRAFQLYKSMVRIGCHPNEQTFNMLVSAFCK 438

Query: 341 D 341
           +
Sbjct: 439 N 439



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 161/337 (47%), Gaps = 35/337 (10%)

Query: 11  LPRLQKDPKLALQLF---KNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQ 67
           L ++QKD  L+L+ F   +  NP+ +  E H +      +LH   I+TK    + F   +
Sbjct: 66  LLKIQKDHVLSLEFFNWVQTENPSSHTLETHSM------ILH---ILTK---NRKFKSAE 113

Query: 68  QILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127
            IL  +     I   + +F  ++  Y   R+ + + ++FD +           F TL + 
Sbjct: 114 LILKSVLVKGFIDLPDKLFEAILYSY---RMCDSSPRVFDSL-----------FKTLAHM 159

Query: 128 KLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
           K    K     + F  M+ Y   P   S N  +   +   R++ A   + EM + R+ P 
Sbjct: 160 K----KFRNATDTFLQMKGYGFLPTVESCNAYLSSLLDLHRVDIALAFYKEMRRCRISPN 215

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
           + T   ++   C   ++++A+++ E++  V  + P+   + +LI G C  G L+ A+ +K
Sbjct: 216 VYTRNMVMRAFCKSGKLEKAVQVFEEMESV-GISPNDTSYNTLIMGYCRKGLLNSAVKLK 274

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
             M    +E +   ++SLI    K G+ +E   +  EMK     PN++TYN LI+G  + 
Sbjct: 275 NSMRAKGVEANVVTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAPNTITYNTLINGHSQM 334

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + E    + +EM   G KA+ ++YN ++ GLCK+GK
Sbjct: 335 GNSEMGRRLYEEMSRNGVKADILTYNALILGLCKEGK 371


>gi|18398498|ref|NP_565422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75146596|sp|Q84J71.1|PP161_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17670
 gi|28393395|gb|AAO42121.1| unknown protein [Arabidopsis thaliana]
 gi|28973597|gb|AAO64123.1| unknown protein [Arabidopsis thaliana]
 gi|330251570|gb|AEC06664.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 463

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 119/211 (56%), Gaps = 3/211 (1%)

Query: 132 GKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR-RLQPTLVT 189
           G++D  K+L  ++ EK+  PD  +YN L+      + L   ++  DEM     ++P LV+
Sbjct: 173 GRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVS 232

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           F  LI  +C    + EA+ L   +      KPD  ++ +++KG C + + S A+GV ++M
Sbjct: 233 FTILIDNVCNSKNLREAMYLVSKLGNA-GFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKM 291

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
             + +E D   Y++LI  L KAGR  E    LK M + G +P++ TY +L++G C++ + 
Sbjct: 292 KEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGES 351

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             A ++L+EM  +GC  N  +YN +L GLCK
Sbjct: 352 LGALSLLEEMEARGCAPNDCTYNTLLHGLCK 382



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 113/244 (46%), Gaps = 8/244 (3%)

Query: 35  TEAH-PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           TE H P   + YN L     +  L + K    + + + +++ D  + P  + F  +I   
Sbjct: 186 TEKHSPPDTYTYNFL-----LKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNV 240

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDA 152
             ++ L  A+ +  ++ +   +     +NT++    T  K      +++ M E+ V PD 
Sbjct: 241 CNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQ 300

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN LI G   + R+E+A      MV    +P   T+ +L+ G+C +     AL L E+
Sbjct: 301 ITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEE 360

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M      P+   + +L+ GLC    +   + + E M    +++++  Y++L+ +L K+G
Sbjct: 361 -MEARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKSG 419

Query: 273 RKNE 276
           +  E
Sbjct: 420 KVAE 423



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 9/182 (4%)

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLI---YGLCLELRVDEALKLKEDIMRVY-NVK 220
           S  L DA  +F+ +      P  + F   +   YG      V++ +KL + I++   N +
Sbjct: 62  SPNLSDAKSLFNSIAATSRIPLDLKFHNSVLQSYGSIA--VVNDTVKLFQHILKSQPNFR 119

Query: 221 PDGQVFASLIKGLCAVGELSLA--LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           P    F  L+   C   + S++    V   MV + +E D       + +L + GR +E  
Sbjct: 120 PGRSTFLILLSHACRAPDSSISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAK 179

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK-GCKANPISYNVILGG 337
            ++KE+ E+   P++ TYN L+   CK +D    +  +DEM D    K + +S+ +++  
Sbjct: 180 DLMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDN 239

Query: 338 LC 339
           +C
Sbjct: 240 VC 241



 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 97/250 (38%), Gaps = 48/250 (19%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ +   Y+ I+          E   +  ++K +  + P +I +  +I    +A  +E A
Sbjct: 261 FKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEG-VEPDQITYNTLIFGLSKAGRVEEA 319

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHG 161
                 M     +     + +L+N     G+      L + ME +  +P+ C+YN L+H 
Sbjct: 320 RMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLH- 378

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                                             GLC    +D+ ++L E +M+   VK 
Sbjct: 379 ----------------------------------GLCKARLMDKGMELYE-MMKSSGVKL 403

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   +A+L++ L   G+++ A  V +  V  K   DA  YS+L + L            L
Sbjct: 404 ESNGYATLVRSLVKSGKVAEAYEVFDYAVDSKSLSDASAYSTLETTL----------KWL 453

Query: 282 KEMKERGCKP 291
           K+ KE+G  P
Sbjct: 454 KKAKEQGLVP 463


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 111/207 (53%), Gaps = 1/207 (0%)

Query: 132 GKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           G LD    L ++M     P A SY  L+      RR   A  +  +M    ++P +VT+G
Sbjct: 93  GCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYG 152

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           TLI GLC    VD+A++L  ++     ++P+  V++ L++G C  G       V EEM  
Sbjct: 153 TLIRGLCDAADVDKAVELLREMCE-SGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSG 211

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
             IE D  +Y+ LI +L + G+  +   ++ +M ERG +PN VTYN LI+  CKE   + 
Sbjct: 212 RGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKE 271

Query: 312 AFTILDEMGDKGCKANPISYNVILGGL 338
           A ++ + M +KG   + ++YN ++ GL
Sbjct: 272 AMSLRNNMLEKGVALDAVTYNTLITGL 298



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 163/311 (52%), Gaps = 6/311 (1%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D +A  ++P   +++ Y  +I  L  A   D+  ++L ++  ++ I P  +++  ++  Y
Sbjct: 138 DMQASGVRP---DVVTYGTLIRGLCDAADVDKAVELLREM-CESGIEPNVVVYSCLLQGY 193

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDA 152
            +A   E   ++F+EMS   ++  V  +  L++     GK+ +  ++  ++ME+ + P+ 
Sbjct: 194 CKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNV 253

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN+LI+       +++A  + + M+++ +    VT+ TLI GL   L +DEA+ L E+
Sbjct: 254 VTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEE 313

Query: 213 IMRVYN-VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           ++     V+P+   F S+I GLC  G +  A  V++ M  +    +   ++ LI  L + 
Sbjct: 314 MIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRV 373

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
            +  +   ++ EM   G +P+S TY+ LI+GFCK    + A ++L +M   G +   + Y
Sbjct: 374 HKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHY 433

Query: 332 NVILGGLCKDG 342
             +L  LC+ G
Sbjct: 434 IPLLAALCEQG 444



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 102/193 (52%), Gaps = 1/193 (0%)

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           DA SYN ++          DA      ++    +PT V++ TL+  LC E R  +A+ L 
Sbjct: 77  DAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLL 136

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
            D M+   V+PD   + +LI+GLC   ++  A+ +  EM    IE +  +YS L+    K
Sbjct: 137 RD-MQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCK 195

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
           AGR      + +EM  RG +P+ V Y  LI   C+E   + A  ++D+M ++G + N ++
Sbjct: 196 AGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVT 255

Query: 331 YNVILGGLCKDGK 343
           YNV++  +CK+G 
Sbjct: 256 YNVLINSMCKEGS 268



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 153/298 (51%), Gaps = 6/298 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  ++    +A  ++ + ++  ++     I P  +++  +I    R   +++A Q+
Sbjct: 182 NVVVYSCLLQGYCKAGRWECVSKVFEEMS-GRGIEPDVVMYTGLIDSLCREGKVKKATQV 240

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
            D+M    ++  V  +N L+N     G +     L   ++EK V+ DA +YN LI G   
Sbjct: 241 MDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSG 300

Query: 165 SRRLEDAWKVFDEMV--KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
              +++A  + +EM+  +  ++P +VTF ++I+GLC   R+ +A +++ D+M       +
Sbjct: 301 VLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVR-DMMAENGCACN 359

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              F  LI GL  V ++  A+ + +EM    +E D+  YS LI+   K  + +   ++L 
Sbjct: 360 LVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLS 419

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +M+  G +P  V Y  L++  C++   E A    DEM  K CK + ++Y+ ++ G C+
Sbjct: 420 KMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEM-HKNCKLDVVAYSTMIHGACR 476



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 105/239 (43%), Gaps = 5/239 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ ++L+I  L R     +  +++ ++   + + P    +  +I  + +   ++RA  +
Sbjct: 359 NLVTFNLLIGGLLRVHKVKKAMELMDEMA-SSGLEPDSFTYSILINGFCKMWQVDRAESL 417

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
             +M    ++  +  +  LL      G +++ +  F  M K    D  +Y+ +IHG    
Sbjct: 418 LSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKNCKLDVVAYSTMIHGACRL 477

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
           R  + A +    M+   L P  VT+  LI        +  A ++ +  M      PD  V
Sbjct: 478 RDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQ-MTASGFVPDVAV 536

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           F SLIKG  A G+    L +  EM    I +D+ I S++ + L      NE  A+L+ +
Sbjct: 537 FDSLIKGYGAKGDTEKVLELIREMTAKDIALDSKIISTIYTCLVA---NNEGKALLQSV 592


>gi|255660896|gb|ACU25617.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 484

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 165/324 (50%), Gaps = 13/324 (4%)

Query: 31  NPNDTEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVP 81
           + + T  H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +  
Sbjct: 20  HSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEW 78

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
            E ++  +I  YG+  +++ +++MF +M    V+ T+K +N L    L  G+    K  F
Sbjct: 79  DEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYF 138

Query: 142 -QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
            +++ + + P   ++N++I G  +S ++E A + F++M  R + P +VT+ T+I G    
Sbjct: 139 NKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRV 198

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            +++EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  
Sbjct: 199 KKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAIT 257

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKP-NSVTYNALISGFCKEEDFEAAFTILDEM 319
           YS+L+  L  A + +E   ILKEM ++   P ++  +  LIS  CK  + +AA  +L  M
Sbjct: 258 YSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNXIFMRLISSHCKSGNLDAAADVLKAM 317

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
                      Y V++   CK G+
Sbjct: 318 IRLSVPTEAGHYGVLIENFCKXGQ 341



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 129/263 (49%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F++M S  +   V  +NT++N      K++  ++ F  M+ + 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   +++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + +++M  Y    D  +F  LI   C  G L  A  V + M+R  +  +AG Y  LI  
Sbjct: 276 VILKEMMDKYLAPTDNXIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGVLIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             K G+ ++   +L ++ E+    +P S        YN +I   C       A T++ ++
Sbjct: 336 FCKXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQAXKAETLVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +P + N ++ G  ++G
Sbjct: 396 XKLGVQ-DPTALNTLIRGHSQEG 417



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 123/285 (43%), Gaps = 45/285 (15%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + +  +I  Y R + +E A + F EM   N++ TV  + TL+   ++  ++D   
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT-LVTFGTLIYG 196
            L + M+ + + P+A +Y+ L+ G   + ++ +A  +  EM+ + L PT    F  LI  
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNXIFMRLISS 300

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI-- 254
            C    +D A  + + ++R+ +V  +   +  LI+  C  G+   A+ + ++++   I  
Sbjct: 301 HCKSGNLDAAADVLKAMIRL-SVPTEAGHYGVLIENFCKXGQYDKAVKLLDKLIEKDIIL 359

Query: 255 ------EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK-----------------P 291
                  ++   Y+ +I  L   G+  +   +++++ + G +                 P
Sbjct: 360 RPQSTLHLEPSAYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSP 419

Query: 292 NSV-----------------TYNALISGFCKEEDFEAAFTILDEM 319
           +S                   YN+L+  + K+ +   A   LD M
Sbjct: 420 DSAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSM 464



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 128/313 (40%), Gaps = 47/313 (15%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D ++  + P   +++ Y+ +I    R K  +E ++   ++K    I P  + +  +I  Y
Sbjct: 175 DMKSREISP---DVVTYNTMINGYYRVKKMEEAEKYFVEMK-GRNIEPTVVTYTTLIKGY 230

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSP-D 151
                ++ AL++ +EM  F ++     ++TLL       K+   + +  ++M+KY++P D
Sbjct: 231 VSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-- 209
              +  LI     S  L+ A  V   M++  +      +G LI   C   + D+A+KL  
Sbjct: 291 NXIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKXGQYDKAVKLLD 350

Query: 210 ----KEDIMR---VYNVKP--------------------------------DGQVFASLI 230
               K+ I+R     +++P                                D     +LI
Sbjct: 351 KLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLI 410

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
           +G    G    A  + + M+R K++ +   Y+SL+ +  K     +  A L  M E    
Sbjct: 411 RGHSQEGSPDSAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHL 470

Query: 291 PNSVTYNALISGF 303
           P+S  + +++   
Sbjct: 471 PDSALFRSVMESL 483


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 163/336 (48%), Gaps = 30/336 (8%)

Query: 17  DPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD 76
           +P LAL L        N  E   ++    +++ Y+ II  L + K  D+   + +++  +
Sbjct: 230 EPDLALNLL-------NKMEKGKIEA---DVVIYNTIIDGLCKYKHMDDAFDLFNKM--E 277

Query: 77  TRIVPKEII--------FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           T+ +  ++          CN    YGR      A ++  +M   N+   + FFN L++  
Sbjct: 278 TKGIKPDVFTYNPLISCLCN----YGR---WSDASRLLSDMLEKNINPDLVFFNALIDAF 330

Query: 129 LTCGKLDRMKELFQIM--EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
           +  GKL   ++L+  M   K+  PD  +YN LI G    +R+E+  +VF EM +R L   
Sbjct: 331 VKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 390

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
            VT+ TLI+G       D A  + +  M    V PD   +  L+ GLC  G +  AL V 
Sbjct: 391 TVTYTTLIHGFFQARDCDNAQMVFKQ-MVSDGVHPDIMTYNILLDGLCNNGNVETALVVF 449

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           E M +  +++D   Y+++I AL KAG+  +   +   +  +G KPN VTY  ++SGFC++
Sbjct: 450 EYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRK 509

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
              E A  +  EM + G   N  +YN ++    +DG
Sbjct: 510 GLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDG 545



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 121/243 (49%), Gaps = 1/243 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIH 160
           AL + ++M    ++  V  +NT+++       +D   +LF  ME K + PD  +YN LI 
Sbjct: 234 ALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLIS 293

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                 R  DA ++  +M+++ + P LV F  LI     E ++ EA KL +++++  +  
Sbjct: 294 CLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCF 353

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   + +LIKG C    +   + V  EM +  +  +   Y++LI   F+A   +    +
Sbjct: 354 PDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 413

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            K+M   G  P+ +TYN L+ G C   + E A  + + M  +  K + ++Y  ++  LCK
Sbjct: 414 FKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCK 473

Query: 341 DGK 343
            GK
Sbjct: 474 AGK 476



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 132/268 (49%), Gaps = 2/268 (0%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD- 135
           +R  P  + F  ++    +    +  + + ++M +  +   +  ++  +N      +L  
Sbjct: 69  SRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSL 128

Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
            +  L ++M+    P   + N L++G     R+ +A  + D+MV+   QP  VTF TL++
Sbjct: 129 ALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVH 188

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           GL    +  EA+ L E  M V   +PD   + ++I GLC  GE  LAL +  +M + KIE
Sbjct: 189 GLFQHNKASEAVALVER-MVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIE 247

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D  IY+++I  L K    ++   +  +M+ +G KP+  TYN LIS  C    +  A  +
Sbjct: 248 ADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRL 307

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
           L +M +K    + + +N ++    K+GK
Sbjct: 308 LSDMLEKNINPDLVFFNALIDAFVKEGK 335



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 147/341 (43%), Gaps = 40/341 (11%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +PF  +++ +  +++ + +   FD +  +  Q++ +  I      +   I ++ R   L 
Sbjct: 70  RPFP-SIVEFSKLLSAIAKMNKFDLVISLGEQMQ-NLGISHNLYTYSIFINYFCRRSQLS 127

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
            AL +  +M       ++   N+LLN      ++     L  Q++E    PD  ++  L+
Sbjct: 128 LALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLV 187

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL---------KLK 210
           HG     +  +A  + + MV +  QP LVT+G +I GLC     D AL         K++
Sbjct: 188 HGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIE 247

Query: 211 EDIMRVYN--------------------------VKPDGQVFASLIKGLCAVGELSLALG 244
            D++ +YN                          +KPD   +  LI  LC  G  S A  
Sbjct: 248 ADVV-IYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASR 306

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM-KERGCKPNSVTYNALISGF 303
           +  +M+   I  D   +++LI A  K G+  E   +  EM K + C P+ V YN LI GF
Sbjct: 307 LLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGF 366

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
           CK +  E    +  EM  +G   N ++Y  ++ G  +   C
Sbjct: 367 CKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDC 407



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 35/226 (15%)

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           S D C  N L    +   +L+DA  +F +MVK R  P++V F  L+  +    + D  + 
Sbjct: 38  SSDDCREN-LSRKVLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVIS 96

Query: 209 LKEDI--------MRVYNV--------------------------KPDGQVFASLIKGLC 234
           L E +        +  Y++                           P      SL+ G C
Sbjct: 97  LGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFC 156

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
               +S A+ + ++MV    + D   +++L+  LF+  + +E  A+++ M  +GC+P+ V
Sbjct: 157 HGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLV 216

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           TY A+I+G CK  + + A  +L++M     +A+ + YN I+ GLCK
Sbjct: 217 TYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCK 262


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 158/309 (51%), Gaps = 14/309 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I     +  + + +Q+L ++  + +I P  + F  +I  + +      A ++
Sbjct: 287 DIVTYNCMINGFCISGRWSDAEQLLQEML-ERKINPDVVTFSALINAFVKEGKFFEAEEL 345

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           +DEM   ++  +   ++++++      +LD  + +F +   K  SPD  ++N LI G   
Sbjct: 346 YDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCR 405

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           ++R++D  K+  EM +  L    +T+ TLI+G C    ++ A  L ++++    V P+  
Sbjct: 406 AKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMIS-SGVCPNVV 464

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG-----------IYSSLISALFKAGR 273
              +L+ GLC  G+L  AL + + M + K+++DA             Y+ LI  L   G+
Sbjct: 465 TCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGK 524

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   + +EM  RG  P+++TY+++I G CK+   + A  + D MG K    + +++N 
Sbjct: 525 FLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNT 584

Query: 334 ILGGLCKDG 342
           ++ G CK G
Sbjct: 585 LITGYCKAG 593



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 147/300 (49%), Gaps = 4/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ +  ++  L R     E   +L ++  D  + P +I +  ++    +      AL +
Sbjct: 181 NVVTFTTLMNGLCREGRVVEAVALLDRMLEDG-LQPNQITYGTIVDGMCKMGDTVSALNL 239

Query: 106 FDEMSSF-NVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCV 163
             +M    ++   V  +NT+++     G+      LF ++ EK + PD  +YN +I+G  
Sbjct: 240 LRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFC 299

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
           +S R  DA ++  EM++R++ P +VTF  LI     E +  EA +L ++++   ++ P  
Sbjct: 300 ISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLP-RSIIPST 358

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             ++S+I G C    L  A  +           D   +++LI+   +A R ++   +L E
Sbjct: 359 VTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHE 418

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M E G   N++TY  LI GFC+  D  AA  +L EM   G   N ++ N +L GLC +GK
Sbjct: 419 MTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGK 478



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 143/293 (48%), Gaps = 14/293 (4%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           P K    +++ ++ +I    RAK  D+  ++LH++  +  +V   I +  +I  + +   
Sbjct: 385 PTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMT-EAGLVANTITYTTLIHGFCQVGD 443

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----------- 147
           L  A  +  EM S  V   V   NTLL+     GKL    E+F+ M+K            
Sbjct: 444 LNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFN 503

Query: 148 -VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA 206
            V PD  +YNILI G +   +  +A ++++EM  R + P  +T+ ++I GLC + R+DEA
Sbjct: 504 GVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 563

Query: 207 LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266
            ++  D M   +  PD   F +LI G C  G +   L +  EM +  I  DA  Y +LI 
Sbjct: 564 TQMF-DSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIY 622

Query: 267 ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
              K    +    I +EM   G  P+++T   +++G   +E+ E A  +L+++
Sbjct: 623 GFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELERAVAMLEDL 675



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 136/302 (45%), Gaps = 14/302 (4%)

Query: 54  ITKLGRAKMFDEMQQILHQLKHDTRIV-----------PKEIIFCNVIGFYGRARLLERA 102
           ITKLG          +LH L  + RI            P  + F  ++    R   +  A
Sbjct: 142 ITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEA 201

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYNILIH 160
           + + D M    +Q     + T+++     G       L + ME+  ++ P+   YN +I 
Sbjct: 202 VALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIID 261

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     R  DA  +F EM ++ + P +VT+  +I G C+  R  +A +L ++++    + 
Sbjct: 262 GLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLE-RKIN 320

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   F++LI      G+   A  + +EM+   I      YSS+I    K  R +    +
Sbjct: 321 PDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHM 380

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
                 +GC P+ +T+N LI+G+C+ +  +    +L EM + G  AN I+Y  ++ G C+
Sbjct: 381 FYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQ 440

Query: 341 DG 342
            G
Sbjct: 441 VG 442



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 125/242 (51%), Gaps = 3/242 (1%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161
           AL  F +++      TV  FNTLL+    C + DR+ E   +  +   P+  ++  L++G
Sbjct: 135 ALSTFGKITKLGFHPTVVTFNTLLHG--LCVE-DRISEALDLFHQMCKPNVVTFTTLMNG 191

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                R+ +A  + D M++  LQP  +T+GT++ G+C       AL L   +  V ++ P
Sbjct: 192 LCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIP 251

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +  ++ ++I GL   G  S A  +  EM   +I  D   Y+ +I+    +GR ++   +L
Sbjct: 252 NVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLL 311

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           +EM ER   P+ VT++ALI+ F KE  F  A  + DEM  +    + ++Y+ ++ G CK 
Sbjct: 312 QEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQ 371

Query: 342 GK 343
            +
Sbjct: 372 NR 373



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 128/273 (46%), Gaps = 11/273 (4%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-M 137
           I+P  + + ++I  + +   L+ A  MF    +      +  FNTL+       ++D  +
Sbjct: 354 IIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGI 413

Query: 138 KELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           K L ++ E  +  +  +Y  LIHG      L  A  +  EM+   + P +VT  TL+ GL
Sbjct: 414 KLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGL 473

Query: 198 CLELRVDEAL---------KLKEDIMRVYN-VKPDGQVFASLIKGLCAVGELSLALGVKE 247
           C   ++ +AL         K+  D  R +N V+PD Q +  LI GL   G+   A  + E
Sbjct: 474 CDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYE 533

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           EM    I  D   YSS+I  L K  R +E   +   M  +   P+ VT+N LI+G+CK  
Sbjct: 534 EMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAG 593

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             +    +  EMG +G  A+ I+Y  ++ G  K
Sbjct: 594 MVDDGLELFCEMGQRGIVADAITYITLIYGFRK 626



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 147/311 (47%), Gaps = 16/311 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF-CNVIGFYGRARLLERALQ 104
           N++ Y+ II  L +     +   +  +++ +  I P  + + C + GF    R  + A Q
Sbjct: 252 NVVIYNTIIDGLWKDGRHSDAHNLFIEMQ-EKEIFPDIVTYNCMINGFCISGRWSD-AEQ 309

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCV 163
           +  EM    +   V  F+ L+N  +  GK    +EL+ +++ + + P   +Y+ +I G  
Sbjct: 310 LLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFC 369

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              RL+ A  +F     +   P ++TF TLI G C   RVD+ +KL  + M    +  + 
Sbjct: 370 KQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHE-MTEAGLVANT 428

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +LI G C VG+L+ A  + +EM+   +  +    ++L+  L   G+  +   + K 
Sbjct: 429 ITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKA 488

Query: 284 MKE-----------RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           M++            G +P+  TYN LI G   E  F  A  + +EM  +G   + I+Y+
Sbjct: 489 MQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYS 548

Query: 333 VILGGLCKDGK 343
            ++ GLCK  +
Sbjct: 549 SMIDGLCKQSR 559



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 130/270 (48%), Gaps = 13/270 (4%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  I F  +I  Y RA+ ++  +++  EM+   +      + TL++     G L+  ++L
Sbjct: 391 PDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDL 450

Query: 141 FQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL-----------QPTLV 188
            Q ++   V P+  + N L+ G   + +L+DA ++F  M K ++           +P + 
Sbjct: 451 LQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQ 510

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           T+  LI GL  E +  EA +L E+ M    + PD   ++S+I GLC    L  A  + + 
Sbjct: 511 TYNILICGLINEGKFLEAEELYEE-MPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDS 569

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M       D   +++LI+   KAG  ++   +  EM +RG   +++TY  LI GF K ++
Sbjct: 570 MGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDN 629

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGL 338
            + A  I  EM   G   + I+   +L GL
Sbjct: 630 IDGALDIFQEMISSGVYPDTITIRNMLTGL 659



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 5/177 (2%)

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
           + L+DA  +F  MV+ R  P+++ F  L+  +    R D  + L +  M +  +  +   
Sbjct: 60  KGLDDAIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKK-MEMLRMPCNAYS 118

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F  L+K  C+  +L  AL    ++ +         +++L+  L    R +E   +  +M 
Sbjct: 119 FTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQM- 177

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
              CKPN VT+  L++G C+E     A  +LD M + G + N I+Y  I+ G+CK G
Sbjct: 178 ---CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMG 231


>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 418

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 131/244 (53%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y +   L+   ++ + M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++  + P+  ++  LI G   + R+  A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  AL  ++ M+++ I +D  
Sbjct: 289 KGDLKQAQDLIDE-MSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP   TY  +I+ FCK+ D      +L EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407

Query: 320 GDKG 323
              G
Sbjct: 408 QRDG 411



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 127/228 (55%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++  +  G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E ++D+A +L ++++    + P+G  F +LI G C 
Sbjct: 195 NAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD-NGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 254 NGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E A      M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGR 361



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 134/267 (50%), Gaps = 9/267 (3%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ + ++ +V  FNTL+N  +  G LD 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M+   V PD  +Y++LI+G     +++DA ++FDEM+   L P  VTF TLI 
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   RV  A+++ + ++   ++ PD   + +LI GLC  G+L  A  + +EM    ++
Sbjct: 250 GHCKNGRVVLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI    K G         K M +   + + V Y ALISG C+E     A  +
Sbjct: 309 PDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
           L EM   G K    +Y +I+   CK G
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 2/198 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           ++ A ++FDEM    +      F TL++     G++    E++ Q++ + +SPD  +YN 
Sbjct: 222 MDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNT 281

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G      L+ A  + DEM  + L+P  +T+ TLI G C E  ++ AL+ ++ +++  
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIK-E 340

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N++ D   + +LI GLC  G    A  +  EM+   ++ + G Y+ +I+   K G     
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400

Query: 278 PAILKEMKERGCKPNSVT 295
             +LKEM+  G  P+ VT
Sbjct: 401 SKLLKEMQRDGYVPSVVT 418



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 51/103 (49%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE +          ++ L+ +  K G      ++   + + G +P+ V++N L+
Sbjct: 119 LVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ K  D +  F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221


>gi|21553611|gb|AAM62704.1| unknown [Arabidopsis thaliana]
          Length = 463

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 119/211 (56%), Gaps = 3/211 (1%)

Query: 132 GKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR-RLQPTLVT 189
           G++D  K+L  ++ EK+  PD  +YN L+      + L   ++  DEM     ++P LV+
Sbjct: 173 GRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVS 232

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           F  LI  +C    + EA+ L   +      KPD  ++ +++KG C + + S A+GV ++M
Sbjct: 233 FTILIDNVCNSKNLREAMYLVSKLGNA-GFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKM 291

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
             + +E D   Y++LI  L KAGR  E    LK M + G +P++ TY +L++G C++ + 
Sbjct: 292 KEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGES 351

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             A ++L+EM  +GC  N  +YN +L GLCK
Sbjct: 352 LGALSLLEEMEARGCAPNDCTYNTLLHGLCK 382



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 113/244 (46%), Gaps = 8/244 (3%)

Query: 35  TEAH-PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           TE H P   + YN L     +  L + K    + + + +++ D  + P  + F  +I   
Sbjct: 186 TEKHSPPDTYTYNFL-----LKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNV 240

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDA 152
             ++ L  A+ +  ++ +   +     +NT++    T  K      +++ M E+ V PD 
Sbjct: 241 CNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQ 300

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN LI G   + R+E+A      MV    +P   T+ +L+ G+C +     AL L E+
Sbjct: 301 ITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEE 360

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M      P+   + +L+ GLC    +   + + E M    +++++  Y++L+ +L K+G
Sbjct: 361 -MEARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKSG 419

Query: 273 RKNE 276
           +  E
Sbjct: 420 KVAE 423



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 5/180 (2%)

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTF-GTLIYGLCLELRVDEALKLKEDIMRVY-NVKPD 222
           S  L DA  +F+ +      P  + F  +++        VD+ +K  + IM+   N +P 
Sbjct: 62  SPNLSDAKSLFNSIAATSRIPLDLKFHNSVLQSYASIAVVDDTVKFFQHIMKSQPNFRPG 121

Query: 223 GQVFASLIKGLCAVGELSLA--LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
              F  L+   C   + S++    V   MV + +E D       + +L + GR +E   +
Sbjct: 122 RSTFLILLSHACRAPDSSISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDL 181

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK-GCKANPISYNVILGGLC 339
           +KE+ E+   P++ TYN L+   CK +D    +  +DEM D    K + +S+ +++  +C
Sbjct: 182 MKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVC 241



 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 97/250 (38%), Gaps = 48/250 (19%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ +   Y+ I+          E   +  ++K +  + P +I +  +I    +A  +E A
Sbjct: 261 FKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEG-VEPDQITYNTLIFGLSKAGRVEEA 319

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHG 161
                 M     +     + +L+N     G+      L + ME +  +P+ C+YN L+H 
Sbjct: 320 RMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLH- 378

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                                             GLC    +D+ ++L E +M+   VK 
Sbjct: 379 ----------------------------------GLCKARLMDKGMELYE-MMKSSGVKL 403

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   +A+L++ L   G+++ A  V +  V  K   DA  YS+L + L            L
Sbjct: 404 ESNGYATLVRSLVKSGKVAEAYEVFDYAVDSKSLSDASAYSTLETTL----------KWL 453

Query: 282 KEMKERGCKP 291
           K+ KE+G  P
Sbjct: 454 KKAKEQGLVP 463


>gi|255660794|gb|ACU25566.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 418

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 139/269 (51%), Gaps = 13/269 (4%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD- 135
           P  + F N++       G  RL   A  +FD ++ ++++ +V  FNTL+N  +  G LD 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDE 189

Query: 136 --RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
             R+K   Q+    V PD  +Y++LI+G     +++DA  +FDEM+ + L P  VTF TL
Sbjct: 190 GFRLKNAMQV--SGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTL 247

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G C   RVD A+++ + ++   ++ PD   + +LI GLC  G+L  A  + +EM+   
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG 306

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           +  D   Y++LI    K G         K M +   + + V Y ALISG C+E     A 
Sbjct: 307 LXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDG 342
            +L EM + G K    +Y +I+   CK G
Sbjct: 367 KMLREMLNVGLKPEIGTYTMIINEFCKKG 395



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 126/228 (55%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++  +  G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E ++D+A  L ++++    + P+G  F +LI G C 
Sbjct: 195 NAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLD-KGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G  P+ +T
Sbjct: 254 NGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGR 361



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 104/198 (52%), Gaps = 2/198 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           ++ A  +FDEM    +      F TL++     G++D   E++ Q++ + +SPD  +YN 
Sbjct: 222 MDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 281

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G      L+ A  + DEM+ + L P  +T+ TLI G C E  ++ A + ++ +++  
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKE- 340

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N++ D   + +LI GLC  G    A  +  EM+   ++ + G Y+ +I+   K G     
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINEFCKKGDVWTG 400

Query: 278 PAILKEMKERGCKPNSVT 295
             +LKEM+  G  P+ VT
Sbjct: 401 SKLLKEMQRDGYMPSVVT 418



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE +          ++ L+ +  K G      ++   + +   +P+ V++N L+
Sbjct: 119 LVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ K  D +  F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESK 221


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 147/306 (48%), Gaps = 8/306 (2%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARL 98
           L+ F  + L Y  ++  L R    DE + +L+++ +     P  +++  +I G+    R 
Sbjct: 303 LRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPN-----PNTVLYNTLISGYVASGRF 357

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
            E    +++ M     +     FN +++  +  G L    EL  +++ K   P+  +Y I
Sbjct: 358 EEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTI 417

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G     RLE+A ++ + M  + L    V +  LI  LC +  ++EAL+L  + M   
Sbjct: 418 LINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGE-MSGK 476

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             KPD   F SLI GLC   ++  AL +  +M  + +  +   Y++L+ A        + 
Sbjct: 477 GCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQA 536

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++ EM  RGC  +++TYN LI   CK    E    + +EM  KG     IS N+++ G
Sbjct: 537 FKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISG 596

Query: 338 LCKDGK 343
           LC+ GK
Sbjct: 597 LCRTGK 602



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 168/345 (48%), Gaps = 20/345 (5%)

Query: 2   PTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAK 61
           P S  +L  L  L  D   +++LF+          A   K + +      L+I KLG   
Sbjct: 63  PISPFQLCKLLELPLDIPTSMELFQ---------RAGAQKGYSHTFDACYLLIDKLGAVG 113

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMF-DEMSSFNVQMTVKF 120
            F  ++++L Q+K D  ++ KE +F  ++  YG+A L  +A ++  D    ++   T K 
Sbjct: 114 DFKVIEKLLKQMK-DEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVYSCDPTFKS 172

Query: 121 FNTLLNPKLTCGKLDRMKE--LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
           +N +L+  L  G   R+     + ++ + VSP   ++ +++    +   ++ A  +  +M
Sbjct: 173 YNVVLD-ILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDM 231

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
            K    P  V + TLI+ LC   RV EAL+L ED M +   +PD Q F  +I GLC  G 
Sbjct: 232 AKHGCVPNSVIYQTLIHALCENNRVSEALQLLED-MFLMCCEPDVQTFNDVIHGLCRAGR 290

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           +  A  + + M+      DA  Y  L+  L + G+ +E  A+L ++      PN+V YN 
Sbjct: 291 IHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIP----NPNTVLYNT 346

Query: 299 LISGFCKEEDFEAAFTIL-DEMGDKGCKANPISYNVILGGLCKDG 342
           LISG+     FE A  +L + M   G + +  ++N+++ GL K G
Sbjct: 347 LISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKG 391



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 130/265 (49%), Gaps = 5/265 (1%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           VP  +I+  +I        +  ALQ+ ++M     +  V+ FN +++     G++    +
Sbjct: 237 VPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAK 296

Query: 140 LF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L  +++ +  S DA +Y  L+HG     ++++A  + +++      P  V + TLI G  
Sbjct: 297 LLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIP----NPNTVLYNTLISGYV 352

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              R +EA  L  + M +   +PD   F  +I GL   G L  AL +  EMV  + E + 
Sbjct: 353 ASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNV 412

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y+ LI+   K GR  E   I+  M  +G   N+V YN LI   CK+ + E A  +  E
Sbjct: 413 ITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGE 472

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M  KGCK +  ++N ++ GLCK+ K
Sbjct: 473 MSGKGCKPDIYTFNSLINGLCKNHK 497



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 132/266 (49%), Gaps = 2/266 (0%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           R  P  I +  +I  + +   LE A ++ + MS+  + +    +N L+      G ++  
Sbjct: 407 RFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEA 466

Query: 138 KELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
            +LF  M  K   PD  ++N LI+G   + ++E+A  ++ +M    +    VT+ TL++ 
Sbjct: 467 LQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHA 526

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
             +   + +A KL ++ M       D   +  LIK LC  G +   LG+ EEM+   I  
Sbjct: 527 FLMRDSIQQAFKLVDE-MLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFP 585

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
                + LIS L + G+ N+    L++M  RG  P+ VTYN+LI+G CK    + A  + 
Sbjct: 586 TIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLF 645

Query: 317 DEMGDKGCKANPISYNVILGGLCKDG 342
           +++  +G + + I+YN ++   C +G
Sbjct: 646 NKLQSEGIRPDAITYNTLISRHCHEG 671



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 148/304 (48%), Gaps = 9/304 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH---DTRIVPKEIIFCNVIGFYGRAR 97
           K F  N++ Y ++I    +    +E  +I++ +         V    + C +     +  
Sbjct: 406 KRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALC----KDG 461

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYN 156
            +E ALQ+F EMS    +  +  FN+L+N      K++    L+  M  + V  +  +YN
Sbjct: 462 NIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYN 521

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            L+H  ++   ++ A+K+ DEM+ R      +T+  LI  LC    V++ L L E+++  
Sbjct: 522 TLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLG- 580

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             + P       LI GLC  G+++ AL   ++M+   +  D   Y+SLI+ L K G   E
Sbjct: 581 KGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQE 640

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +  +++  G +P+++TYN LIS  C E  F  A  +L +  D G   N +++++++ 
Sbjct: 641 ASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILIN 700

Query: 337 GLCK 340
            + K
Sbjct: 701 YIVK 704



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 136/278 (48%), Gaps = 9/278 (3%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K    N + Y+ +I  L +    +E  Q+  ++       P    F ++I    +   +E
Sbjct: 441 KGLSLNTVGYNCLICALCKDGNIEEALQLFGEMS-GKGCKPDIYTFNSLINGLCKNHKME 499

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV----SPDACSYN 156
            AL ++ +M    V      +NTL++  L     D +++ F+++++ +      D  +YN
Sbjct: 500 EALSLYHDMFLEGVIANTVTYNTLVHAFLM---RDSIQQAFKLVDEMLFRGCPLDNITYN 556

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            LI     +  +E    +F+EM+ + + PT+++   LI GLC   +V++ALK  +D++  
Sbjct: 557 GLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIH- 615

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             + PD   + SLI GLC +G +  A  +  ++  + I  DA  Y++LIS     G  N+
Sbjct: 616 RGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFND 675

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
              +L +  + G  PN VT++ LI+   K+  + A F+
Sbjct: 676 ACLLLYKGVDSGFIPNEVTWSILINYIVKKIPWGARFS 713


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 125/246 (50%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           LE A  +F +M        +  +N+L++     G LD    +F Q+ +    PD  +YN 
Sbjct: 72  LEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNA 131

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+      R+  A++   EM    L+P +VT+ T I   C E  + EA+K   D+ RV 
Sbjct: 132 LINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRV- 190

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + P+   + SLI   C  G L+ AL + EE+++  I+++   Y++L+  L + GR  E 
Sbjct: 191 ALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEA 250

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + + M   G  PN  TY AL+ GF K ++ E A  IL EM +K  K + + Y  IL G
Sbjct: 251 EEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWG 310

Query: 338 LCKDGK 343
           LC + +
Sbjct: 311 LCNESR 316



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 146/304 (48%), Gaps = 9/304 (2%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           + ++  Y+++I  L +    +  + +  Q+K +    P  + + ++I  +G+  LL+  +
Sbjct: 53  KRSVFTYNIMIDYLCKEGDLEMARSLFTQMK-EAGFTPDIVTYNSLIDGHGKLGLLDECI 111

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----VSPDACSYNILI 159
            +F++M   +    V  +N L+N    C K +RM + F+ + +     + P+  +Y+  I
Sbjct: 112 CIFEQMKDADCDPDVITYNALIN--CFC-KFERMPKAFEFLHEMKANGLKPNVVTYSTFI 168

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
                   L++A K F +M +  L P   T+ +LI   C    + EALKL E+I++   +
Sbjct: 169 DAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQA-GI 227

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           K +   + +L+ GLC  G +  A  V   M+   +  +   Y++L+    KA        
Sbjct: 228 KLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKD 287

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           ILKEMKE+  KP+ + Y  ++ G C E   E A  ++ E+ + G   N + Y  ++    
Sbjct: 288 ILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYF 347

Query: 340 KDGK 343
           K G+
Sbjct: 348 KSGQ 351



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 152/312 (48%), Gaps = 18/312 (5%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           ++ +A+ LKP   N++ Y   I    +  M  E  +    ++    + P E  + ++I  
Sbjct: 150 HEMKANGLKP---NVVTYSTFIDAFCKEGMLQEAIKFFVDMRR-VALTPNEFTYTSLIDA 205

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPD 151
             +A  L  AL++ +E+    +++ V  +  LL+     G++   +E+F+ M    V+P+
Sbjct: 206 NCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPN 265

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +Y  L+HG + ++ +E A  +  EM ++ ++P L+ +GT+++GLC E R++EA  L  
Sbjct: 266 QETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIG 325

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           +I +   +  +  ++ +L+      G+ + AL + EEM+             L+  L K 
Sbjct: 326 EI-KESGINTNAVIYTTLMDAYFKSGQATEALTLLEEML------------DLVDGLCKN 372

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
                   +  EM ++G  P+ + Y ALI G  K  + + A  + D M + G + +  +Y
Sbjct: 373 NCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAY 432

Query: 332 NVILGGLCKDGK 343
             ++ GL   G+
Sbjct: 433 TALIWGLSHSGQ 444



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 146/327 (44%), Gaps = 32/327 (9%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  +++ Y+ +I   G+  + DE   I  Q+K D    P  I +  +I  + +   + +A
Sbjct: 87  FTPDIVTYNSLIDGHGKLGLLDECICIFEQMK-DADCDPDVITYNALINCFCKFERMPKA 145

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
            +   EM +  ++  V  ++T ++     G L    + F  M +  ++P+  +Y  LI  
Sbjct: 146 FEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDA 205

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY---N 218
              +  L +A K+ +E+++  ++  +VT+  L+ GLC E R+ EA    E++ R      
Sbjct: 206 NCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEA----EEVFRAMLNAG 261

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V P+ + + +L+ G     E+  A  + +EM    I+ D  +Y +++  L    R  E  
Sbjct: 262 VAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAK 321

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL---------------------- 316
            ++ E+KE G   N+V Y  L+  + K      A T+L                      
Sbjct: 322 LLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFEVAKKL 381

Query: 317 -DEMGDKGCKANPISYNVILGGLCKDG 342
            DEM DKG   + I+Y  ++ G  K G
Sbjct: 382 FDEMLDKGMMPDKIAYTALIDGNMKHG 408



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 113/247 (45%), Gaps = 2/247 (0%)

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYN 156
           +LE A + F +M  F V    +  N LL+     G+ D  ++ F+ M    +     +YN
Sbjct: 1   MLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYN 60

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           I+I        LE A  +F +M +    P +VT+ +LI G      +DE + + E  M+ 
Sbjct: 61  IMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQ-MKD 119

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
            +  PD   + +LI   C    +  A     EM  + ++ +   YS+ I A  K G   E
Sbjct: 120 ADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQE 179

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
                 +M+     PN  TY +LI   CK  +   A  +++E+   G K N ++Y  +L 
Sbjct: 180 AIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLD 239

Query: 337 GLCKDGK 343
           GLC++G+
Sbjct: 240 GLCEEGR 246


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 136/287 (47%), Gaps = 45/287 (15%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLN--PKLTCGKLDRMK-ELFQIMEKYVS----PD 151
           ++ AL++FDE+       +V+ FN LLN   +  C     +   LF  M +  S    PD
Sbjct: 30  IDDALKLFDELLPHARPASVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSNKVRPD 89

Query: 152 ACSYNILI----------HG-CVVSRRLEDAWKVFDEMVKRRLQ---------------- 184
            C+Y+IL           HG       L+  W+V + ++ + L                 
Sbjct: 90  LCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILL 149

Query: 185 ---------PTLVTFGTLIYGLCLELRVDEALKLKEDIMR--VYNVKPDGQVFASLIKGL 233
                    P +V+  TL+ GLC E RV+EAL+L   +      N  P+   + ++I GL
Sbjct: 150 RRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGL 209

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           C    +  A GV + M+   +++D   YS++I  L KA   +    +L+ M ++G KP+ 
Sbjct: 210 CKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDV 269

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           VTYN +I G CK +  + A  +L  M DKG K + ++YN I+ GLCK
Sbjct: 270 VTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCK 316



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 158/339 (46%), Gaps = 38/339 (11%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + +++ Y  II  L +A+  D  + +L  +  D  + P  + +  +I    +A+ ++
Sbjct: 228 KGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMI-DKGVKPDVVTYNTIIDGLCKAQAVD 286

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
           RA  +   M    V+  V  +NT+++       +DR   + Q M +K V PD  +YN LI
Sbjct: 287 RAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLI 346

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           HG + +   ++  +  +EM  R L P +VT+  L+  LC   +  EA K+   ++R   +
Sbjct: 347 HGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIR-KGI 405

Query: 220 KPDGQVFASLIKGLCAVG---------ELSLALGV---------------KEEMVRDKIE 255
           KP+  ++  L+ G  A G         +L +A G+               K+ M+ + + 
Sbjct: 406 KPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMH 465

Query: 256 M-----------DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           +           D   Y  LI AL K GR ++      +M   G  PNSV +N+L+ G C
Sbjct: 466 IFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLC 525

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             + +E A  +  EM D+G + N + +N I+  LC +G+
Sbjct: 526 TVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQ 564



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 140/298 (46%), Gaps = 4/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT--RIVPKEIIFCNVIGFYGRARLLERAL 103
           N++  + ++  L   K  +E  ++LH +  D      P  + +  +I    +A+ ++RA 
Sbjct: 160 NVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAE 219

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGC 162
            +   M    V++ V  ++T+++       +DR + + Q M +K V PD  +YN +I G 
Sbjct: 220 GVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGL 279

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             ++ ++ A  V   M+ + ++P +VT+ T+I GLC    VD A  + + ++   +VKPD
Sbjct: 280 CKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMID-KDVKPD 338

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
            Q +  LI G  + GE    +   EEM    ++ D   YS L+  L K G+  E   I  
Sbjct: 339 IQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFY 398

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            M  +G KPN   Y  L+ G+           +LD M   G   N   +N++L    K
Sbjct: 399 CMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAK 456



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 152/308 (49%), Gaps = 6/308 (1%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           A+ + P  Y    +++++    +  M DE   I  ++     + P  + +  +I    + 
Sbjct: 437 ANGISPNNY---IFNIVLCAYAKKAMIDEAMHIFSRMSQHG-LSPDVVTYGILIDALCKL 492

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSY 155
             ++ A+  F++M +  V      FN+L+    T  + ++ +ELF ++ ++ V P+   +
Sbjct: 493 GRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFF 552

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N ++       ++  A ++ D M +  ++P ++++ TLI G CL  R DEA +L  D+M 
Sbjct: 553 NTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLL-DVMV 611

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
              +KPD   + +L++G C  G +  A  +  EM+R  +   A  YS+++  LF   R +
Sbjct: 612 SVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFS 671

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E   +   M + G + +  TYN +++G CK    + AF I   +  K  + N I++ +++
Sbjct: 672 EAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMI 731

Query: 336 GGLCKDGK 343
             L K G+
Sbjct: 732 DVLFKGGR 739



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 160/339 (47%), Gaps = 38/339 (11%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + +++ Y+ II  L +A+  D  + +L  +  D  + P  + +  +I    +A+ ++
Sbjct: 263 KGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMI-DKGVKPDVVTYNTIIDGLCKAQAVD 321

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILI 159
           RA  +   M   +V+  ++ +N L++  L+ G+  + ++ L ++  + + PD  +Y++L+
Sbjct: 322 RADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLL 381

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG----------------------- 196
                + +  +A K+F  M+++ ++P +  +G L++G                       
Sbjct: 382 DYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGIS 441

Query: 197 ---------LCLELR---VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
                    LC   +   +DEA+ +    M  + + PD   +  LI  LC +G +  A+ 
Sbjct: 442 PNNYIFNIVLCAYAKKAMIDEAMHIFSR-MSQHGLSPDVVTYGILIDALCKLGRVDDAVL 500

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
              +M+ D +  ++ +++SL+  L    R  +   +  EM ++G +PN V +N ++   C
Sbjct: 501 KFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLC 560

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            E     A  ++D M   G + N ISYN ++GG C  G+
Sbjct: 561 NEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGR 599



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 133/268 (49%), Gaps = 6/268 (2%)

Query: 82  KEIIFCNVIGFYGRARLLERALQ-MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
            E++   ++     A+ ++ A+  +   M  F     V   NTLL       +++   EL
Sbjct: 124 NEVVINQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALEL 183

Query: 141 FQIMEK----YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
              M +      +P+  +YN +I G   ++ ++ A  V   M+ + ++  +VT+ T+I G
Sbjct: 184 LHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDG 243

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC    VD A  + + ++    VKPD   + ++I GLC    +  A GV + M+   ++ 
Sbjct: 244 LCKAQAVDRAEGVLQHMID-KGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKP 302

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           D   Y+++I  L KA   +    +L+ M ++  KP+  TYN LI G+    +++     L
Sbjct: 303 DVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRL 362

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGKC 344
           +EM  +G   + ++Y+++L  LCK+GKC
Sbjct: 363 EEMYARGLDPDVVTYSLLLDYLCKNGKC 390



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 147/342 (42%), Gaps = 41/342 (11%)

Query: 38  HPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           H L P   +++ Y ++I  L +    D+     +Q+ +D  + P  ++F +++       
Sbjct: 473 HGLSP---DVVTYGILIDALCKLGRVDDAVLKFNQMINDG-VTPNSVVFNSLVYGLCTVD 528

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYN 156
             E+A ++F EM    V+  V FFNT++      G++   + L   ME+  V P+  SYN
Sbjct: 529 RWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYN 588

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            LI G  ++ R ++A ++ D MV   L+P L+++ TL+ G C   R+D A  L  +++R 
Sbjct: 589 TLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLR- 647

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY--------------- 261
             V P    ++++++GL      S A  +   M++   + D   Y               
Sbjct: 648 KGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDE 707

Query: 262 --------------------SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
                               + +I  LFK GRK +   +   +   G  PN VTY  ++ 
Sbjct: 708 AFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMK 767

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              +E   +    +   M   GC  + +  N I+  L   G+
Sbjct: 768 NIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGE 809



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 55/272 (20%), Positives = 107/272 (39%), Gaps = 36/272 (13%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R N++ Y+ +I     A   DE  Q+L  +     + P  I +  ++  Y +   ++ A 
Sbjct: 581 RPNVISYNTLIGGHCLAGRTDEAAQLLDVMV-SVGLKPDLISYDTLLRGYCKTGRIDNAY 639

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGC 162
            +F EM    V      ++T+L       +    KEL+  +++     D  +YNI+++G 
Sbjct: 640 CLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGL 699

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--------- 213
             +  +++A+K+F  +  + L+P ++TF  +I  L    R  +A+ L   I         
Sbjct: 700 CKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNV 759

Query: 214 -------------------------MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
                                    M      PD  +  ++I+ L   GE+  A     +
Sbjct: 760 VTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRAGAYLSK 819

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           +      ++A   S LIS   +   KN   ++
Sbjct: 820 IDEMNFSLEASTTSLLISLFSREEYKNHAKSL 851


>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
          Length = 378

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 134/249 (53%), Gaps = 2/249 (0%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDAC 153
           +A  +E+   +F+++  +     V+ ++ L++     G+      +F  M ++  + DA 
Sbjct: 36  KAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQRGFALDAR 95

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN ++ G   S +++ A++  +EM  + + PT+ T+G++I GL    R+DEA  L E+ 
Sbjct: 96  AYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEE- 154

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
            +   ++ +  V++SLI G   VG +  A  + EEM++  +  +   ++SL+ AL KA  
Sbjct: 155 AKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEE 214

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            NE     + MKE  C PN+ TY+ LI+G C+ + +  AF    EM  +G   N ++Y  
Sbjct: 215 INEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTT 274

Query: 334 ILGGLCKDG 342
           ++ GL K G
Sbjct: 275 MISGLAKVG 283



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 122/242 (50%), Gaps = 2/242 (0%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
           E   ++F EM+    Q  +   NT ++     G +++ + +F+ ++ Y   PD  SY+IL
Sbjct: 6   EDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSIL 65

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           IHG   + +  +   +F  M +R        +  ++ G C   +VD+A +  E+ M+V +
Sbjct: 66  IHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEE-MKVKH 124

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V P    + S+I GL  +  L  A  + EE     IE++  +YSSLI    K GR +E  
Sbjct: 125 VPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAY 184

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            IL+EM ++G  PN  T+N+L+    K E+   A      M +  C  N  +Y++++ GL
Sbjct: 185 LILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGL 244

Query: 339 CK 340
           C+
Sbjct: 245 CR 246



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 135/282 (47%), Gaps = 9/282 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I  L +A    E   I H +K     +        V GF    ++ ++A +  +EM
Sbjct: 62  YSILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKV-DKAYEALEEM 120

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME----KYVSPDACSYNILIHGCVVS 165
              +V  TV  + ++++      K+DR+ E + + E    K +  +   Y+ LI G    
Sbjct: 121 KVKHVPPTVATYGSIIDG---LAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKV 177

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            R+++A+ + +EM+K+ L P + T+ +L+  L     ++EAL   +  M+     P+   
Sbjct: 178 GRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQS-MKEMKCSPNTYT 236

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           ++ LI GLC V + + A    +EM +  +  +   Y+++IS L K G   +  ++ +  K
Sbjct: 237 YSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFK 296

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
             G  P++ ++NALI G         A+ + +E   +GC+ N
Sbjct: 297 ANGGIPDAASFNALIEGMSHANRAIEAYHVFEETRLRGCRIN 338



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 121/246 (49%), Gaps = 5/246 (2%)

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDA 152
           G+AR       +F  M      +  + +N +++     GK+D+  E  + M+ K+V P  
Sbjct: 73  GQAR---ETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTV 129

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +Y  +I G     RL++A+ +F+E   + ++  ++ + +LI G     R+DEA  + E+
Sbjct: 130 ATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEE 189

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           +M+   + P+   + SL+  L    E++ AL   + M   K   +   YS LI+ L +  
Sbjct: 190 MMK-KGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQ 248

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           + N+     +EM+++G  PN VTY  +ISG  K  +   A ++ +     G   +  S+N
Sbjct: 249 KYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKANGGIPDAASFN 308

Query: 333 VILGGL 338
            ++ G+
Sbjct: 309 ALIEGM 314



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 1/177 (0%)

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           R ED  K+F EM +R  QP L    T +  +     V++   + EDI + Y   PD + +
Sbjct: 4   RKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDI-KGYGFLPDVRSY 62

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
           + LI GL   G+      +   M +    +DA  Y++++    K+G+ ++    L+EMK 
Sbjct: 63  SILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKV 122

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +   P   TY ++I G  K +  + A+ + +E   KG + N I Y+ ++ G  K G+
Sbjct: 123 KHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGR 179



 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%)

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           GRK +   I KEM  RGC+P+    N  +    K  D E    I +++   G   +  SY
Sbjct: 3   GRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSY 62

Query: 332 NVILGGLCKDGK 343
           ++++ GL K G+
Sbjct: 63  SILIHGLTKAGQ 74


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 151/304 (49%), Gaps = 2/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F   +L ++L+I    +AK  D   ++L ++  +   VP    F  +I    +A  + 
Sbjct: 226 KGFTPTVLMFNLVINGFCKAKDLDSAYKLL-EVMIEKGCVPNVFTFTILITGLCKANRVG 284

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
            A Q+ ++M        V  ++T++N     G++D   ELFQ+ME+    P+  ++NILI
Sbjct: 285 EAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILI 344

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G   ++R+E+A +++  M +    P ++T+ +LI GLC   +VDEA +L + I      
Sbjct: 345 DGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVS 404

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
             +   +++L  G  A+G ++ A  +   +V      D   Y+SLI    K  R  E   
Sbjct: 405 AANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVE 464

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +++EM  +G  P   T +A++ G  +    E A  + D M  +GC  + + YN+++ G+ 
Sbjct: 465 LVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMA 524

Query: 340 KDGK 343
           +  K
Sbjct: 525 RASK 528



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 134/296 (45%), Gaps = 35/296 (11%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           +P +  +  +I  +  A  L+ A+Q+ +EM S   +       TL+      G++    E
Sbjct: 54  MPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALE 113

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
            F+ M K  +PD  +Y  L+H    + + ++A  +  EMV +   P  VTF TLI GLC 
Sbjct: 114 HFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCK 173

Query: 200 ELRVDEALKLKEDIMR-------------------VYN----------------VKPDGQ 224
               ++A ++ ED+++                    YN                  P   
Sbjct: 174 FGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVL 233

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           +F  +I G C   +L  A  + E M+      +   ++ LI+ L KA R  E   +L++M
Sbjct: 234 MFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKM 293

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
              GC PN VTY+ +I+G CK+   + A+ +   M  + C  N +++N+++ GLCK
Sbjct: 294 VMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCK 349



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 150/303 (49%), Gaps = 9/303 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  ++  L +A  FDE Q +L ++       P  + F  +I    +    E+A ++
Sbjct: 125 DVMTYTALVHALCKAGKFDEAQGMLREMVAQG-CAPDTVTFSTLIDGLCKFGSEEQAFRV 183

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM----KELFQIMEKYVSPDACSYNILIHG 161
            +++    +  +   F T++  +  C K + +    K L  ++ K  +P    +N++I+G
Sbjct: 184 LEDVIQRGMGNSDAAFETII--QRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVING 241

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              ++ L+ A+K+ + M+++   P + TF  LI GLC   RV EA +L E  M +    P
Sbjct: 242 FCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEK-MVMGGCSP 300

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   ++++I GLC  G++  A  + + M R     +   ++ LI  L KA R  E   + 
Sbjct: 301 NVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLY 360

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK-ANPISYNVILGGLCK 340
             M+E GC P+ +TYN+LI G CK    + AF +   + + G   AN ++Y+ +  G   
Sbjct: 361 HRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAA 420

Query: 341 DGK 343
            G+
Sbjct: 421 LGR 423



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 115/251 (45%), Gaps = 42/251 (16%)

Query: 133 KLDRMKELFQI----MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
           +L+R +E   +    M +   P+  +Y ILI G   +  L+ A ++ +EM     +   V
Sbjct: 34  RLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAV 93

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
              TL+ GLC   RV EAL+    + +  +  PD   + +L+  LC  G+   A G+  E
Sbjct: 94  VHTTLMKGLCDAGRVVEALEHFRAMAK--DCAPDVMTYTALVHALCKAGKFDEAQGMLRE 151

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG---------------CK--- 290
           MV      D   +S+LI  L K G + +   +L+++ +RG               C    
Sbjct: 152 MVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYN 211

Query: 291 ------------------PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
                             P  + +N +I+GFCK +D ++A+ +L+ M +KGC  N  ++ 
Sbjct: 212 SVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFT 271

Query: 333 VILGGLCKDGK 343
           +++ GLCK  +
Sbjct: 272 ILITGLCKANR 282



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 141/337 (41%), Gaps = 40/337 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ ++++I  L +AK  +E +Q+ H+++ +T   P  I + ++I    ++  ++ A Q+
Sbjct: 336 NVVTHNILIDGLCKAKRIEEARQLYHRMR-ETGCAPDIITYNSLIDGLCKSFQVDEAFQL 394

Query: 106 FDEMSSFNVQMT-VKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI-HGC 162
           F  +    V       ++TL +     G++     +F ++ +K  SPD  +Y  LI   C
Sbjct: 395 FQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYC 454

Query: 163 VVSR----------------------------------RLEDAWKVFDEMVKRRLQPTLV 188
             SR                                    E A ++FD M  R      +
Sbjct: 455 KTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDAL 514

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIM--RVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
            +  ++ G+    + D+AL + E ++  R     P      +L++ LC VG+   A  + 
Sbjct: 515 IYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLL 574

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
            +M           Y+ L+S L +  R +E   + + M   G  P   T N +IS  C  
Sbjct: 575 HKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSA 634

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              + A+ ++  M   GC  +  + N ++GG CK G+
Sbjct: 635 AKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGR 671



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 38/76 (50%)

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L +  R+ E  A+ +    R C PN  TY  LI GF    D + A  +L+EM   G + N
Sbjct: 32  LCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGN 91

Query: 328 PISYNVILGGLCKDGK 343
            + +  ++ GLC  G+
Sbjct: 92  AVVHTTLMKGLCDAGR 107


>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rubella]
          Length = 394

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 138/264 (52%), Gaps = 3/264 (1%)

Query: 81  PKEIIFCNVIGF-YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F N++   + + R +  A  +FD ++ + ++ +V  +NTL+N  +  G LD    
Sbjct: 121 PASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 180

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L   M    V PD  +Y++LI+G     +++DA ++FDEM+ + L P  VTF TLI G C
Sbjct: 181 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 240

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              RVD AL++ + ++   ++ PD   + +LI GLC  G+L  A  + +EM    ++ D 
Sbjct: 241 KNGRVDLALEIYKQMLS-QSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDK 299

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y++LI    K G  +      K M +   + + V Y ALISG C+E     A  +L E
Sbjct: 300 ITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLRE 359

Query: 319 MGDKGCKANPISYNVILGGLCKDG 342
           M   G K +  +Y +I+   CK G
Sbjct: 360 MLSVGLKPDARTYTMIINEFCKKG 383



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 125/228 (54%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++       +   + +F  + K+ + P   SYN L++G +    L++ +++ 
Sbjct: 123 SLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 182

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
             M    +QP + T+  LI GLC E ++D+A +L ++ M V  + P+G  F +LI G C 
Sbjct: 183 SAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDE-MLVKGLVPNGVTFTTLIDGHCK 241

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LAL + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 242 NGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKIT 301

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y ALI G CKE D + AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 302 YTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGR 349


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 150/304 (49%), Gaps = 13/304 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLK-----HDTRIVPKEIIFCNVIGFYGRARLLE 100
           +++ +  +++K+ ++K +D +  + H ++     HD  +    I    VI    R     
Sbjct: 68  SIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHD--LYSYNI----VINCLCRCSRFV 121

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
            AL +  +M  F  +  V   ++L+N      ++    +L   ME+    PD   YN +I
Sbjct: 122 IALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTII 181

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G      + DA ++FD M +  ++   VT+ +L+ GLC   R  +A +L  D M + ++
Sbjct: 182 DGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRD-MVMRDI 240

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   F ++I      G+ S A+ + EEM R  ++ D   Y+SLI+ L   GR +E   
Sbjct: 241 VPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQ 300

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +L  M  +GC P+ VTYN LI+GFCK +  +    +  EM  +G   + I+YN I+ G  
Sbjct: 301 MLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYF 360

Query: 340 KDGK 343
           + G+
Sbjct: 361 QAGR 364



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 131/246 (53%), Gaps = 5/246 (2%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           IVP  I F  VI  + +      A+++++EM+   V   V  +N+L+N     G++D  K
Sbjct: 240 IVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAK 299

Query: 139 ELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           ++  +M  K   PD  +YN LI+G   S+R+++  K+F EM +R L    +T+ T+I G 
Sbjct: 300 QMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGY 359

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
               R D A    ++I    + +P+ + ++ L+ GLC    +  AL + E M + +IE+D
Sbjct: 360 FQAGRPDAA----QEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELD 415

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+ +I  + K G   +   + + +  +G KP+ V+Y  +ISGFC++  ++ +  +  
Sbjct: 416 ITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYR 475

Query: 318 EMGDKG 323
           +M + G
Sbjct: 476 KMQEDG 481



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 126/263 (47%), Gaps = 5/263 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +I+  +I    +  L+  A+++FD M    V+     +N+L+      G+      L
Sbjct: 172 PDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARL 231

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
            + M  + + P+  ++  +I   V   +  +A K+++EM +R + P + T+ +LI GLC+
Sbjct: 232 MRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCM 291

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             RVDEA ++  D+M      PD   + +LI G C    +     +  EM +  +  D  
Sbjct: 292 HGRVDEAKQML-DLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTI 350

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+++I   F+AGR +    I   M  R   PN  TY+ L+ G C     E A  + + M
Sbjct: 351 TYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENM 407

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
                + +  +YN+++ G+CK G
Sbjct: 408 QKSEIELDITTYNIVIHGMCKIG 430


>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           lycioides]
          Length = 397

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 129/242 (53%), Gaps = 2/242 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIH 160
           A  +F+ ++ + ++ +V  FNTL+N  +  G +D    L   M    V PD  +Y++LI+
Sbjct: 144 AQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLIN 203

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     +++DA ++FDEM+ + L P  VTF TLI G C   RVD A+++ + ++   ++ 
Sbjct: 204 GLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLX 262

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   + +LI GLC  G+L  A  + +EM    ++ D   Y++LI    K G        
Sbjct: 263 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEH 322

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            K M +   + + V Y ALISG C+EE +  A  +L EM   G K +  +Y +I+   CK
Sbjct: 323 RKRMIQEXIRLDDVAYTALISGLCQEERYLDAEKVLREMLSVGLKPDTGTYTMIINEFCK 382

Query: 341 DG 342
            G
Sbjct: 383 KG 384



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 132/240 (55%), Gaps = 2/240 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y R   ++   ++ + M +  VQ  V  ++ L+N      K+D   E+
Sbjct: 158 PSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEM 217

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++K + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 218 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCK 277

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 278 KGDLKQAHDLIDE-MSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLDDV 336

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L +  R  +   +L+EM   G KP++ TY  +I+ FCK+ D      +L EM
Sbjct: 337 AYTALISGLCQEERYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEM 396



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 128/237 (54%), Gaps = 2/237 (0%)

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           ++E+       ++ FFN L++     G +   + +F  + K+ + P   S+N L++G + 
Sbjct: 113 YEEILECGYPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIR 172

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +++ +++ + M    +QP + T+  LI GLC E ++D+A ++ ++++    + P+G 
Sbjct: 173 LGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDK-GLVPNGV 231

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C  G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM
Sbjct: 232 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEM 291

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             +G KP+ +TY  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++
Sbjct: 292 SMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLDDVAYTALISGLCQE 348



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 102/188 (54%), Gaps = 1/188 (0%)

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           +NIL+H       +  A  VF+ + K  L+P++V+F TL+ G      +DE  +LK + M
Sbjct: 128 FNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLK-NAM 186

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
               V+PD   ++ LI GLC   ++  A  + +EM+   +  +   +++LI    K GR 
Sbjct: 187 HASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRV 246

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +    I K+M  +   P+ +TYN LI G CK+ D + A  ++DEM  KG K + I+Y  +
Sbjct: 247 DLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTL 306

Query: 335 LGGLCKDG 342
           + G CK+G
Sbjct: 307 IDGCCKEG 314



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 105/212 (49%), Gaps = 2/212 (0%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           H + + P    +  +I    +   ++ A +MFDEM    +      F TL++     G++
Sbjct: 187 HASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRV 246

Query: 135 DRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           D   E++ Q++ + + PD  +YN LI+G      L+ A  + DEM  + L+P  +T+ TL
Sbjct: 247 DLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTL 306

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G C E  ++ A + ++ +++   ++ D   + +LI GLC       A  V  EM+   
Sbjct: 307 IDGCCKEGDLETAFEHRKRMIQE-XIRLDDVAYTALISGLCQEERYLDAEKVLREMLSVG 365

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           ++ D G Y+ +I+   K G       +LKEM+
Sbjct: 366 LKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQ 397



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 60/118 (50%)

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F  L+   C  G++ +A  V   + +  +      +++L++   + G  +E   +   M 
Sbjct: 128 FNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMH 187

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             G +P+  TY+ LI+G CKE   + A  + DEM DKG   N +++  ++ G CK+G+
Sbjct: 188 ASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGR 245



 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 51/103 (49%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE++          ++ L+    K G      ++   + + G +P+ V++N L+
Sbjct: 108 LVWGFYEEILECGYPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLM 167

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 168 NGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESK 210


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
           [Arabidopsis lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1164

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 150/304 (49%), Gaps = 3/304 (0%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LK +  +++ Y  +I    R    D++ +++ ++K    + P    + ++IG   R   L
Sbjct: 697 LKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKG-LKPNSYTYGSIIGLLCRICKL 755

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNIL 158
             A + F EM    +      + TL++     G +    + F ++  + ++PD  +Y  +
Sbjct: 756 AEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAI 815

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G      + +A K+F EM+ R L+P ++TF  L+ G C    + +A ++   +++   
Sbjct: 816 ISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQA-G 874

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
             P+   + +LI GLC  G+L  A  +  EM +  ++ +   Y+S+++ L K+G   E  
Sbjct: 875 CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 934

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            ++ E +  G   ++VTY  L+  +CK  + + A  IL EM  KG +   +++NV++ G 
Sbjct: 935 KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGF 994

Query: 339 CKDG 342
           C  G
Sbjct: 995 CLHG 998



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 151/301 (50%), Gaps = 6/301 (1%)

Query: 40   LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
            LKP  Y    Y  II  L R     E ++   ++     I+P  I++  ++  + +   +
Sbjct: 735  LKPNSYT---YGSIIGLLCRICKLAEAEEAFSEMIGQG-ILPDTIVYTTLVDGFCKRGDI 790

Query: 100  ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNIL 158
              A + F EM S ++   V  +  +++     G +    +LF +++ + + PD  ++  L
Sbjct: 791  RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTEL 850

Query: 159  IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
            ++G   +  ++DA++V + M++    P +VT+ TLI GLC E  +D A +L  ++ ++  
Sbjct: 851  MNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI-G 909

Query: 219  VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
            ++P+   + S++ GLC  G +  A+ +  E     +  D   Y++L+ A  K+G  ++  
Sbjct: 910  LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 969

Query: 279  AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             IL EM  +G +P  VT+N L++GFC     E    +L+ M  KG   N  ++N ++   
Sbjct: 970  EILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQY 1029

Query: 339  C 339
            C
Sbjct: 1030 C 1030



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 142/302 (47%), Gaps = 7/302 (2%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQIL--HQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           +N+  Y+++I  + +    +E   +L   +LK  T   P  I +  VI  Y R   L++ 
Sbjct: 667 WNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYT---PDVISYSTVINGYCRFGELDKV 723

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
            ++ ++M    ++     + +++       KL   +E F +++ + + PD   Y  L+ G
Sbjct: 724 WKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDG 783

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 +  A K F EM  R + P ++T+  +I G C    + EA KL  + M    ++P
Sbjct: 784 FCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE-MLCRGLEP 842

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   F  L+ G C  G +  A  V   M++     +   Y++LI  L K G  +    +L
Sbjct: 843 DIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELL 902

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM + G +PN  TYN++++G CK  + E A  ++ E    G  A+ ++Y  ++   CK 
Sbjct: 903 HEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 962

Query: 342 GK 343
           G+
Sbjct: 963 GE 964



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 114/248 (45%), Gaps = 2/248 (0%)

Query: 81   PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
            P  + +  +I    +   L+ A ++  EM    +Q  +  +N+++N     G ++   +L
Sbjct: 877  PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL 936

Query: 141  FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
                E   ++ D  +Y  L+     S  ++ A ++  EM+ + LQPT+VTF  L+ G CL
Sbjct: 937  VGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCL 996

Query: 200  ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
               +++  KL  + M    + P+   F  L+K  C    L  A  + ++M    +E D  
Sbjct: 997  HGMLEDGEKLL-NWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGK 1055

Query: 260  IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             Y +L+     A    E   + +EMK +G   +  TY+ LI GF K + F  A  I D+M
Sbjct: 1056 TYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQM 1115

Query: 320  GDKGCKAN 327
               G  A+
Sbjct: 1116 RRDGLAAD 1123



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 133/299 (44%), Gaps = 3/299 (1%)

Query: 46   NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            ++L Y  II+   +     E  ++ H++     + P  I F  ++  Y +A  ++ A ++
Sbjct: 808  DVLTYTAIISGFCQIGDMVEAGKLFHEMLCRG-LEPDIITFTELMNGYCKAGHIKDAFRV 866

Query: 106  FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
             + M        V  + TL++     G LD   EL   M K  + P+  +YN +++G   
Sbjct: 867  HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCK 926

Query: 165  SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            S  +E+A K+  E     L    VT+ TL+   C    +D+A ++  +++    ++P   
Sbjct: 927  SGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLG-KGLQPTIV 985

Query: 225  VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
             F  L+ G C  G L     +   M+   I  +A  ++ L+             AI K+M
Sbjct: 986  TFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDM 1045

Query: 285  KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              RG +P+  TY  L+ G C   + + A+ +  EM  KG   +  +Y+V++ G  K  K
Sbjct: 1046 CSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKK 1104



 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 22/191 (11%)

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           I+IH  V S+ L+ A  +     +R                  +L V E+     D++ V
Sbjct: 547 IVIHLAVASKDLKVAQSLISSFWERP-----------------KLNVTESFVQFFDLL-V 588

Query: 217 YNVK---PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           Y  K    D +VF    + L   G L  A  V E+M+   + +     +  ++ L K   
Sbjct: 589 YTYKDWGSDPRVFDVFFQVLVEFGMLPEARKVFEKMLNYGLVLSVDSCNVYLARLSKDCN 648

Query: 274 KNEFPAIL-KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           K     I+ +E  E G   N  +YN +I   C+      A  +L  M  KG   + ISY+
Sbjct: 649 KTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYS 708

Query: 333 VILGGLCKDGK 343
            ++ G C+ G+
Sbjct: 709 TVINGYCRFGE 719


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 143/304 (47%), Gaps = 7/304 (2%)

Query: 38  HPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           HP  P    +  +D ++  + R   +     +  QL H   I P       +I  Y    
Sbjct: 50  HPPPP----IFVFDKLLGAIVRMGHYPTAISLFSQL-HSKGITPSIATLTILINCYCHQA 104

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYN 156
            L  A  +   +     Q  +  FNTL+N     G + + M     +M K    D  SY 
Sbjct: 105 HLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYG 164

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            LI+G   + +  DA ++  +M +  ++P L+T+ T+I GLC +  + +AL+L   ++  
Sbjct: 165 SLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFS-LVTS 223

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             +  D   + SLI G C+VG+   A  +   MVR  I  D   ++ L+ AL K GR  E
Sbjct: 224 RGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVE 283

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +   M +RG KP+ VTYNAL+ GFC   +   A  + + M  +G + + ++YNV++ 
Sbjct: 284 AQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLIN 343

Query: 337 GLCK 340
           G CK
Sbjct: 344 GYCK 347



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 156/310 (50%), Gaps = 9/310 (2%)

Query: 35  TEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYG 94
            + +PL  F Y  L     I  L +     +  Q+L +++ D  + P  I +  VI    
Sbjct: 153 AKGYPLDEFSYGSL-----INGLCKNGQTRDALQLLQKMEEDL-VRPNLITYSTVIDGLC 206

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDAC 153
           + RL+  AL++F  ++S  + + V  +N+L++   + G+      L  +M +  ++PD  
Sbjct: 207 KDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDY 266

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           ++NIL+       R+ +A  VF  M+KR  +P +VT+  L+ G CL   V EA +L   +
Sbjct: 267 TFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRM 326

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           ++   ++PD   +  LI G C +  +  A+ + +E+    +  +   Y+SLI  L K GR
Sbjct: 327 VK-RGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGR 385

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +    ++ EM +RG  P+ VTYN  +  FCK + +E A ++  ++  +G   +   Y+V
Sbjct: 386 MSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIV-QGIWPDFYMYDV 444

Query: 334 ILGGLCKDGK 343
           I+   CK  K
Sbjct: 445 IVENFCKGEK 454



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 108/226 (47%), Gaps = 2/226 (0%)

Query: 118 VKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           V+FF  L  PK      D +    +++ K+  P    ++ L+   V       A  +F +
Sbjct: 22  VRFFGHLHPPKFHTVD-DTLLSFNRMLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQ 80

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           +  + + P++ T   LI   C +  +  A  L   I+++   +P+   F +LI G C  G
Sbjct: 81  LHSKGITPSIATLTILINCYCHQAHLSFAFSLLGTILKM-GFQPNMVTFNTLINGFCING 139

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
            +S A+  + +++     +D   Y SLI+ L K G+  +   +L++M+E   +PN +TY+
Sbjct: 140 MVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYS 199

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +I G CK+     A  +   +  +G   + ++YN ++ G C  G+
Sbjct: 200 TVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQ 245



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 104/226 (46%), Gaps = 3/226 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           +  A ++F+ M    ++  V  +N L+N       +D    LF +I  K + P+  +YN 
Sbjct: 316 VSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNS 375

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G     R+    ++ DEM  R   P +VT+   +   C     ++A+ L   I  V 
Sbjct: 376 LIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQI--VQ 433

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + PD  ++  +++  C   +L +A    + ++      +   Y+ +I+AL K    +E 
Sbjct: 434 GIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEA 493

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
             +L +M +  C P++VT+  +I    +  + + A  +  EM ++G
Sbjct: 494 MTLLSKMDDNDCPPDAVTFETIIGALQERNETDKAEKLRLEMIERG 539



 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 40/205 (19%), Positives = 88/205 (42%), Gaps = 2/205 (0%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++L+Y+++I    +  M DE   +  +++    +VP    + ++I    +   +    ++
Sbjct: 334 DVLNYNVLINGYCKIDMVDEAMVLFKEIRCKN-LVPNLATYNSLIDGLCKLGRMSCVQEL 392

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
            DEM        +  +N  L+        ++   LF+ + + + PD   Y++++      
Sbjct: 393 VDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQGIWPDFYMYDVIVENFCKG 452

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            +L+ A +    ++     P + T+  +I  LC +   DEA+ L    M   +  PD   
Sbjct: 453 EKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSK-MDDNDCPPDAVT 511

Query: 226 FASLIKGLCAVGELSLALGVKEEMV 250
           F ++I  L    E   A  ++ EM+
Sbjct: 512 FETIIGALQERNETDKAEKLRLEMI 536


>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 418

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 126/228 (55%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G++   + +F  + K+ + P   S+N L++G +    L + +++ 
Sbjct: 135 SLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E ++D+A +L ++++    + P+G  F +LI G C 
Sbjct: 195 NAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD-NGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 254 NGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGR 361



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 135/267 (50%), Gaps = 9/267 (3%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ + ++ +V  FNTL+N  +  G L+ 
Sbjct: 133 PASLYFFNILMHSFCKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M+   V PD  +Y++LI+G     +++DA ++FDEM+   L P  VTF TLI 
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   RVD A+++ + ++   ++ PD   + +LI GLC  G+L  A  + +EM    ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI    K G         K M +   + + V Y ALISG C+E     A  +
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
           L EM   G K    +Y +I+   CK G
Sbjct: 369 LREMLSVGLKLEIGTYTMIINEFCKKG 395



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 129/244 (52%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y +   L    ++ + M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 169 PSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++  + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 289 KGDLKQAQDLIDE-MSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G K    TY  +I+ FCK+ D      ++ EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLMKEM 407

Query: 320 GDKG 323
              G
Sbjct: 408 QRDG 411



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 105/198 (53%), Gaps = 2/198 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           ++ A ++FDEM    +      F TL++     G++D   E++ Q++ + +SPD  +YN 
Sbjct: 222 MDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 281

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G      L+ A  + DEM  + L+P  +T+ TLI G C E  ++ A + ++ IM   
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRK-IMIKE 340

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N++ D   + +LI GLC  G    A  +  EM+   ++++ G Y+ +I+   K G     
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCKKGDVWTG 400

Query: 278 PAILKEMKERGCKPNSVT 295
             ++KEM+  G  P+ VT
Sbjct: 401 SKLMKEMQRDGYVPSVVT 418



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE +          ++ L+ +  K G      ++   + + G +P+ V++N L+
Sbjct: 119 LVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ K  D    F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 156/341 (45%), Gaps = 52/341 (15%)

Query: 46  NLLHYDLIITKL---GRA----KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           N   Y L+I  L   G A    KMF EM         +  I P  I++ ++I    R   
Sbjct: 78  NFFTYGLVIDSLCKDGLAIKGLKMFREM--------INMGICPNVIVYSSLINGLCRVGK 129

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           L  A+ +FDEM S  ++  V  +N+L++     G        F Q++ + + PD  ++  
Sbjct: 130 LREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTT 189

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI       ++++A+K+F+ M+K+   P +VT+ +L+ GLCL  ++D A++L E +M   
Sbjct: 190 LIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFE-VMVER 248

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            +K D   + +LI G C  G+   A+ +  +M  +++      Y+ L+ AL++ GR    
Sbjct: 249 GIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTA 308

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKE------------------------------- 306
             +   M+  G  P+  TY  L+ G CK                                
Sbjct: 309 KELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGG 368

Query: 307 ----EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
                 +E+A  I DE+   G   N ++YN+++ GLCK+GK
Sbjct: 369 MFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGK 409



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 147/304 (48%), Gaps = 3/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +  + N++ Y+ +I    R  ++ E  +   Q+  +  I+P  + F  +I    +   ++
Sbjct: 143 QGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEG-ILPDVVTFTTLIDHLSKKGKVQ 201

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            A ++F+ M        +  +N+LLN      ++D    LF++M E+ +  D  SYN LI
Sbjct: 202 EAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLI 261

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +G   S + E+A  +F +M    L P++ T+  L+  L    R+  A +L  + M++   
Sbjct: 262 NGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNN-MQICGQ 320

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P    +  L+ GLC  G +  A+ V   +   K +    IYS LI  +F+A R      
Sbjct: 321 SPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAME 380

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           I  E+   G  PN VTYN +I+G CKE     A  +  +M + GC+ + IS+N I+ G  
Sbjct: 381 IFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFL 440

Query: 340 KDGK 343
           ++ +
Sbjct: 441 QENQ 444



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 121/247 (48%), Gaps = 10/247 (4%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161
           AL++FD+M+    Q  +  +  L+N      +  R  EL + M      + CS N   +G
Sbjct: 28  ALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVELHRRM----LSEICSGNFFTYG 83

Query: 162 CVVSRRLEDAW-----KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            V+    +D       K+F EM+   + P ++ + +LI GLC   ++ EA+ L ++ M  
Sbjct: 84  LVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDE-MVS 142

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             +K +   + SLI   C  G    A     +MV + I  D   +++LI  L K G+  E
Sbjct: 143 QGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQE 202

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              I + M ++G  PN VTYN+L++G C     + A  + + M ++G K + ISYN ++ 
Sbjct: 203 AYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLIN 262

Query: 337 GLCKDGK 343
           G C  GK
Sbjct: 263 GYCTSGK 269



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 1/164 (0%)

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
           +K   QP LVT  TL+ G+C E +V +AL+L + + R    + D  ++  LI  L    +
Sbjct: 1   MKSGYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRS-GFQGDILLYGYLINALRKTRQ 59

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
              A+ +   M+ +    +   Y  +I +L K G   +   + +EM   G  PN + Y++
Sbjct: 60  ARRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSS 119

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           LI+G C+      A  + DEM  +G KAN I+YN ++   C+ G
Sbjct: 120 LINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFG 163


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 135/283 (47%), Gaps = 41/283 (14%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDAC 153
           R R  + A  M   +   NV +    FNT++   L  GKL    EL++ M  K   PDA 
Sbjct: 292 RVRQADEARAMLGRVPELNVVL----FNTVIGGCLAEGKLAEATELYETMGLKGCQPDAH 347

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF----------------------- 190
           +Y+IL+HG     R+  A ++  EM K+   P +VT+                       
Sbjct: 348 TYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEM 407

Query: 191 ------------GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
                         +IY LC + R+DEA+ L ++ MR     PD   + ++I  LC   +
Sbjct: 408 SAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQE-MRSQGCNPDICSYNTIIYHLCNNEQ 466

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           +  A  + E ++ + +  +   Y+++I AL + GR  +   + KEM   GC  + V+YN 
Sbjct: 467 MEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNG 526

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           LI   CK+ + + +  +L+EM +KG K N +SYN+++  LCK+
Sbjct: 527 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKE 569



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 154/301 (51%), Gaps = 16/301 (5%)

Query: 45  YNLLHYDLIITKLGR----AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           Y++L + L   KLGR     ++  EM++            P  + +  V+  + +  + +
Sbjct: 349 YSILMHGL--CKLGRIGSAVRLLREMEK--------KGFAPNVVTYTIVLHSFCKNGMWD 398

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
               + +EMS+  + +  + +N ++      G++D    L Q M  +  +PD CSYN +I
Sbjct: 399 DTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTII 458

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +    + ++E+A  +F+ +++  +    +T+ T+I+ L  + R  +A++L ++++ ++  
Sbjct: 459 YHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMI-LHGC 517

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
             D   +  LIK +C  G +  +L + EEM    I+ +   Y+ LIS L K  R  +   
Sbjct: 518 SLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALE 577

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + K+M  +G  P+ VTYN LI+G CK     AA  +L+++ ++    + I+YN+++   C
Sbjct: 578 LSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHC 637

Query: 340 K 340
           K
Sbjct: 638 K 638



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 138/295 (46%), Gaps = 6/295 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+++++ L RA    +   +  ++ H  R+ P    F        R    + AL +   M
Sbjct: 142 YNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGM 201

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
           +          + T+++     G +     L  +++    + D  +++ ++ G     R+
Sbjct: 202 ARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRV 261

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A ++ D M+ +   P ++T+G L+ GLC   + DEA  +   +  +  V     +F +
Sbjct: 262 REAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVV-----LFNT 316

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I G  A G+L+ A  + E M     + DA  YS L+  L K GR      +L+EM+++G
Sbjct: 317 VIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKG 376

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             PN VTY  ++  FCK   ++    +L+EM  KG   N   YN ++  LCKDG+
Sbjct: 377 FAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGR 431



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 123/255 (48%), Gaps = 5/255 (1%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV 148
           V G  G  R+ E A ++ D M +      V  +  LL       + D  + +   + +  
Sbjct: 252 VRGMCGLGRVRE-AARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPEL- 309

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
             +   +N +I GC+   +L +A ++++ M  +  QP   T+  L++GLC   R+  A++
Sbjct: 310 --NVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVR 367

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           L  + M      P+   +  ++   C  G       + EEM    + +++  Y+ +I AL
Sbjct: 368 LLRE-MEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYAL 426

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K GR +E   +++EM+ +GC P+  +YN +I   C  E  E A  + + + ++G  AN 
Sbjct: 427 CKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANG 486

Query: 329 ISYNVILGGLCKDGK 343
           I+YN I+  L +DG+
Sbjct: 487 ITYNTIIHALLRDGR 501



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 133/278 (47%), Gaps = 3/278 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  N++ Y +++    +  M+D+ + +L ++      +  +     +       R+ E
Sbjct: 375 KGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDE 434

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILI 159
            A+ +  EM S      +  +NT++       +++  + +F+ ++E+ V  +  +YN +I
Sbjct: 435 -AMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTII 493

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           H  +   R +DA ++  EM+       +V++  LI  +C +  VD +L L E+ M    +
Sbjct: 494 HALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEE-MAEKGI 552

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           KP+   +  LI  LC    +  AL + ++M+   +  D   Y++LI+ L K G  +    
Sbjct: 553 KPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALN 612

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           +L+++      P+ +TYN LIS  CK    + A  +L+
Sbjct: 613 LLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLN 650


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 139 ELFQIM--EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           ++F +M  E   +P++ SY+ILIHG     RLE+A+ + D+M ++  QP+  T+  LI  
Sbjct: 251 KVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKA 310

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC    +D+A  L ++ M     KP+   +  LI GLC  G++  A GV  +MV+D I  
Sbjct: 311 LCDRGLIDKAFNLFDE-MIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFP 369

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
               Y++LI+   K GR      +L  M++R CKPN  T+N L+ G C+      A  +L
Sbjct: 370 SVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLL 429

Query: 317 DEMGDKGCKANPISYNVILGGLCKDG 342
             M D G   + +SYNV++ GLC++G
Sbjct: 430 KRMLDNGLSPDIVSYNVLIDGLCREG 455



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 97/177 (54%), Gaps = 2/177 (1%)

Query: 168 LEDAWKVFDEMVKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           L DA KVFD M +     P  V++  LI+GLC   R++EA  LK D M     +P  + +
Sbjct: 246 LRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLK-DQMGEKGCQPSTRTY 304

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
             LIK LC  G +  A  + +EM+    + +   Y+ LI  L + G+  E   + ++M +
Sbjct: 305 TVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVK 364

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            G  P+ +TYNALI+G+CK+     AF +L  M  + CK N  ++N ++ GLC+ GK
Sbjct: 365 DGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGK 421



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 136/284 (47%), Gaps = 9/284 (3%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           K+FD M +       +    P  + +  +I        LE A  + D+M     Q + + 
Sbjct: 251 KVFDLMSR-------EGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRT 303

Query: 121 FNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +  L+      G +D+   LF +++ +   P+  +Y +LI G     ++E+A  V  +MV
Sbjct: 304 YTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMV 363

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           K  + P+++T+  LI G C + RV  A +L   +M     KP+ + F  L++GLC VG+ 
Sbjct: 364 KDGIFPSVITYNALINGYCKDGRVVPAFELLT-VMEKRACKPNVRTFNELMEGLCRVGKP 422

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A+ + + M+ + +  D   Y+ LI  L + G  N    +L  M     +P+ +T+ A+
Sbjct: 423 YKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAI 482

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I+ FCK+   + A   L  M  KG   + ++   ++ G+C  GK
Sbjct: 483 INAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGK 526



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 138/299 (46%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y ++I  L R    +E   +  ++  D  I P  I +  +I  Y +   +  A ++
Sbjct: 335 NVHTYTVLIDGLCRDGKIEEANGVCRKMVKDG-IFPSVITYNALINGYCKDGRVVPAFEL 393

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
              M     +  V+ FN L+      GK  +   L + +++  +SPD  SYN+LI G   
Sbjct: 394 LTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCR 453

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +  A+K+   M    L+P  +TF  +I   C + + D A      ++R   +  D  
Sbjct: 454 EGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLR-KGISLDEV 512

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
              +LI G+C VG+   AL + E +V+ ++       + ++  L K  +  E  A+L ++
Sbjct: 513 TGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKI 572

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + G  P+ VTY  L+ G  +  D   +F +L+ M   GC  N   Y +I+ GLC+ G+
Sbjct: 573 NKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGR 631



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 80/152 (52%)

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           +L+ G C  L + +ALK+ + + R     P+   ++ LI GLC VG L  A G+K++M  
Sbjct: 235 SLLLGFCRGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGE 294

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
              +     Y+ LI AL   G  ++   +  EM  RGCKPN  TY  LI G C++   E 
Sbjct: 295 KGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEE 354

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           A  +  +M   G   + I+YN ++ G CKDG+
Sbjct: 355 ANGVCRKMVKDGIFPSVITYNALINGYCKDGR 386



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 119/272 (43%), Gaps = 4/272 (1%)

Query: 70  LHQLKH--DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127
           +H LK   D  + P  + +  +I    R   +  A ++   M+SF+++     F  ++N 
Sbjct: 426 VHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINA 485

Query: 128 KLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
               GK D       +M  K +S D  +   LI G     +  DA  + + +VK R+  T
Sbjct: 486 FCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTT 545

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
             +   ++  L    ++ E L +   I ++  + P    + +L+ GL   G++S +  + 
Sbjct: 546 PHSLNVILDMLSKGCKLKEELAMLGKINKL-GLVPSVVTYTTLVDGLIRSGDISGSFRML 604

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           E M       +   Y+ +I+ L + GR  E   +L  M++ G  PN VTY  ++ G+   
Sbjct: 605 ELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNN 664

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
              + A   +  M ++G + N   Y+ +L G 
Sbjct: 665 GKLDRALETVRAMVERGYELNDRIYSSLLRGF 696


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 130/243 (53%), Gaps = 2/243 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIH 160
           A+++  +M  +        +NT+L+     G+L+  ++L   M+ K + P+  ++NIL+ 
Sbjct: 216 AIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVV 275

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           GC     L++A  V + M +  + P   T+  +I G C + R+ EA++L+E+ M    + 
Sbjct: 276 GCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREE-MENLKLS 334

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   + +LI G    G       + EEM    ++ ++  Y+ ++    K G+ +E    
Sbjct: 335 PDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKT 394

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +++M+E GC P+ VTYN LIS  CK    + AF ++DEMG KG K + ++ N +L  LC+
Sbjct: 395 VRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCR 454

Query: 341 DGK 343
           + K
Sbjct: 455 ERK 457



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 130/258 (50%), Gaps = 5/258 (1%)

Query: 90  IGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL---TCGKLDRMKELFQIMEK 146
           IG Y       +A Q+F+ M    +Q T+   NTLLN  +   +   +   K +F    K
Sbjct: 131 IGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIK 190

Query: 147 Y-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
             V  +  S+NILIHG  +  R  +A +V  +M      P  +T+ T++ GLC + R++E
Sbjct: 191 IGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNE 250

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           A  L  D M+   + P+   F  L+ G C +G L  A  V E M ++ +  DA  Y+ +I
Sbjct: 251 ARDLLLD-MKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMI 309

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
           S   K GR  E   + +EM+     P+ VTYN LI+G  +    E  F +++EM  +G K
Sbjct: 310 SGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMK 369

Query: 326 ANPISYNVILGGLCKDGK 343
            N ++YNV++    K GK
Sbjct: 370 PNSVTYNVMVKWFVKKGK 387



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 152/311 (48%), Gaps = 6/311 (1%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           + E   +KP   N + Y++++    +    DE+ + + +++ ++  +P  + +  +I ++
Sbjct: 362 EMEGRGMKP---NSVTYNVMVKWFVKKGKMDEVDKTVRKME-ESGCLPDIVTYNTLISWH 417

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDA 152
            +   ++ A ++ DEM    ++M     NT+L       KLD   +L      +    D 
Sbjct: 418 CKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDE 477

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            SY  LI G     +   A +++DEM ++ + P+++T+ ++I GLC   + ++A+  K D
Sbjct: 478 VSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAID-KLD 536

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            +    + PD   + ++I G C  G++  A     +MV    + D    ++L+  L K G
Sbjct: 537 ELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEG 596

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
              +   +      +G   ++V+YN +I   CKE+ F  AF +L+EM +K    +  +YN
Sbjct: 597 MLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYN 656

Query: 333 VILGGLCKDGK 343
            ILGGL   G+
Sbjct: 657 AILGGLTDAGR 667



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 150/295 (50%), Gaps = 5/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+++I+   +     E  ++  +++ + ++ P  + +  +I         E   ++ +EM
Sbjct: 305 YNVMISGFCKQGRIAEAMRLREEME-NLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEM 363

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
               ++     +N ++   +  GK+D + +  + ME+    PD  +YN LI       ++
Sbjct: 364 EGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKM 423

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK-EDIMRVYNVKPDGQVFA 227
           ++A+++ DEM ++ L+   VT  T++  LC E ++DEA  L      R Y V  D   + 
Sbjct: 424 DEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFV--DEVSYG 481

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +LI G     + S AL + +EM   +I      Y+S+I+ L + G+ N+    L E+ E 
Sbjct: 482 TLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLES 541

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           G  P+ +TYN +I G+C+E   E AF   ++M +K  K + ++ N +L GLCK+G
Sbjct: 542 GLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEG 596



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 143/295 (48%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ I+  L +    +E + +L  +K +  + P    F  ++    R   L+ A  + + M
Sbjct: 235 YNTILDGLCKKGRLNEARDLLLDMK-NKGLFPNRTTFNILVVGCCRLGWLKEAANVIELM 293

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
           S  +V      +N +++     G++     L + ME   +SPD  +YN LI+GC      
Sbjct: 294 SQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSS 353

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E+ +K+ +EM  R ++P  VT+  ++     + ++DE  K     M      PD   + +
Sbjct: 354 EEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRK-MEESGCLPDIVTYNT 412

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI   C VG++  A  + +EM R  ++MD    ++++ AL +  + +E   +L   + RG
Sbjct: 413 LISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRG 472

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              + V+Y  LI G+ K E    A  + DEM +K    + I+YN ++ GLC+ GK
Sbjct: 473 YFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGK 527


>gi|147791424|emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera]
          Length = 383

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 154/311 (49%), Gaps = 5/311 (1%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           ++  L  FR     Y+  + +L  AK F  +++IL + K   + + +E     +I  YG+
Sbjct: 48  KSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQKK-YKDISREGFAVRLISLYGK 106

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PDAC 153
           + + + A ++FDEM     + +V  FN LL   +   K D+++  F  +   +S  PD  
Sbjct: 107 SGMFDHAFKVFDEMPDQKCERSVLSFNXLLGACVXSKKFDKVEGFFSELPSKLSVEPDLV 166

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           SYNI+I G      ++ A  + DEM K+ L+P L+TF TL+       R  +  K+    
Sbjct: 167 SYNIVIKGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNRXYTSGRFLDGEKI-WGR 225

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSL-ALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           M   N+ PD + + + + GL +  +  L  +G+ EEM    I+ D   +++LI      G
Sbjct: 226 MEKKNILPDIRSYNAKLVGLVSSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCNDG 285

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           + +E      +M+E  C P+ +T+  L+  +C++  F+ AF +  E+ ++ C  + +   
Sbjct: 286 KVDEATNWYGKMRENDCSPDKLTFATLVPLYCEKGSFDQAFELCKEIFNRKCLVDEVLLQ 345

Query: 333 VILGGLCKDGK 343
             + GL K GK
Sbjct: 346 NAVDGLVKGGK 356



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 124/252 (49%), Gaps = 3/252 (1%)

Query: 95  RARLLERALQMFDEMSSFN-VQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC 153
           R R L+R +Q F + S  +  +     +   +    +  +   ++E+ +  +KY      
Sbjct: 35  RERNLKRLVQKFKKSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQKKYKDISRE 94

Query: 154 SYNI-LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            + + LI     S   + A+KVFDEM  ++ + ++++F  L+       + D+      +
Sbjct: 95  GFAVRLISLYGKSGMFDHAFKVFDEMPDQKCERSVLSFNXLLGACVXSKKFDKVEGFFSE 154

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           +    +V+PD   +  +IKGLC +G +  A+G+ +EM +  +E D   +++L++  + +G
Sbjct: 155 LPSKLSVEPDLVSYNIVIKGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNRXYTSG 214

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGF-CKEEDFEAAFTILDEMGDKGCKANPISY 331
           R  +   I   M+++   P+  +YNA + G    E+       +++EM  KG K +  S+
Sbjct: 215 RFLDGEKIWGRMEKKNILPDIRSYNAKLVGLVSSEKRMLEGIGLVEEMQTKGIKPDGYSF 274

Query: 332 NVILGGLCKDGK 343
           N ++ G C DGK
Sbjct: 275 NALIKGFCNDGK 286


>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 737

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 159/331 (48%), Gaps = 11/331 (3%)

Query: 13  RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ 72
           +LQ D ++AL  F           A     +R++ + Y +++  L + K+  +  + + +
Sbjct: 111 QLQSDERIALDFF---------YWAGRQWRYRHDPIVYYMMLQVLSKTKLC-QGARRVLR 160

Query: 73  LKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132
           L     I  +   F +V+  Y RA  L  A+Q+   M    V+  +   NT ++  +   
Sbjct: 161 LMVRRGIARRPEAFAHVMVSYSRAGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMAN 220

Query: 133 KLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           KL++     + M+   ++P+  +YN LI G     ++E A ++  EM  +   P  V++ 
Sbjct: 221 KLEKALRFLERMQLVGITPNVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYY 280

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           T++  LC + R+ E   L E +++   + PD   + +L+  L   G    AL    E   
Sbjct: 281 TVMGFLCQDKRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEE 340

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
              ++D   YS+++++    GR +    I+ EM  +GC P+ VTY A+++G CK    E 
Sbjct: 341 RGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEE 400

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           A  +L +M   GCK N +SY  +L GLC+ G
Sbjct: 401 AKKMLQQMYKHGCKPNTVSYTALLNGLCQHG 431



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 144/295 (48%), Gaps = 8/295 (2%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNV-IGFYGRARLLERALQMFDEMSS 111
           ++    RA       Q+L  ++     V   ++ CN  I     A  LE+AL+  + M  
Sbjct: 177 VMVSYSRAGKLRNAMQVLTMMQKAG--VEPNLLICNTAIHVLVMANKLEKALRFLERMQL 234

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLED 170
             +   V  +N L+       +++   EL   M  K   PD  SY  ++      +R+++
Sbjct: 235 VGITPNVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKE 294

Query: 171 AWKVFDEMVK-RRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDIMRVYNVKPDGQVFAS 228
              + ++MVK  +L P  VT+ TL++ L      DEAL+ L+E   R + V   G  +++
Sbjct: 295 VRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVG--YSA 352

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           ++   C  G +  A  +  EM+      D   Y+++++ L K G+  E   +L++M + G
Sbjct: 353 IVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHG 412

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           CKPN+V+Y AL++G C+  +   A  +++   +     N I+Y+V++ GL ++GK
Sbjct: 413 CKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGK 467



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 146/309 (47%), Gaps = 8/309 (2%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           P K    + + Y  ++  L + K   E++ ++ ++  D ++ P ++ +  ++    +   
Sbjct: 268 PFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGH 327

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
            + AL+   E      Q+    ++ ++N     G++DR KE+  +++ K  SPD  +Y  
Sbjct: 328 ADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTA 387

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE---LRVDEALKLKEDIM 214
           +++G     ++E+A K+  +M K   +P  V++  L+ GLC     L   E +   E+  
Sbjct: 388 VVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDW 447

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
                 P+   ++ ++ GL   G+LS A  V  EM+           + LI +L    + 
Sbjct: 448 WT----PNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLEQKM 503

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           NE    ++E   RGC  N+V +  +I GFC+ ++ + A ++LD+M       + +++  I
Sbjct: 504 NEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNIDTALSLLDDMYLNNKHPDAVTFTAI 563

Query: 335 LGGLCKDGK 343
           +  L K G+
Sbjct: 564 IDALGKKGR 572



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 139/304 (45%), Gaps = 7/304 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + F+ + + Y  I+         D  ++I++++       P  + +  V+    +   +E
Sbjct: 341 RGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKG-CSPDVVTYTAVVNGLCKVGKVE 399

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILI 159
            A +M  +M     +     +  LLN     G     +E+    E+ + +P+A +Y++++
Sbjct: 400 EAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVM 459

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           HG     +L +A  V  EM+ +   PT V    LI  LCLE +++EA K  E+ +     
Sbjct: 460 HGLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECLN-RGC 518

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
             +   F ++I G C    +  AL + ++M  +    DA  ++++I AL K GR  E   
Sbjct: 519 AVNAVNFTTVIHGFCQSDNIDTALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRIEEATV 578

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG-CKANPISYNVILGGL 338
              +M ++G  P  VTY A+I  +CK    E    +L +M  +  C+    +YN ++  L
Sbjct: 579 YTMKMLKKGLDPTPVTYRAVIHQYCKMGRVEELIKLLGKMLSRSKCRT---AYNQVIEKL 635

Query: 339 CKDG 342
           C  G
Sbjct: 636 CNFG 639



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 138/286 (48%), Gaps = 18/286 (6%)

Query: 70  LHQLKHDTRIV---------PKEIIFCNVIGFYGRARLLERALQMFDEMSS----FNVQM 116
           L+Q++H   ++         P ++ +  V+GF  + + ++    + ++M      F  Q+
Sbjct: 254 LYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLMEKMVKDNKLFPDQV 313

Query: 117 TVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVF 175
           T   +NTL++     G  D   E L +  E+    D   Y+ +++   +  R++ A ++ 
Sbjct: 314 T---YNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIV 370

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           +EM+ +   P +VT+  ++ GLC   +V+EA K+ + + + +  KP+   + +L+ GLC 
Sbjct: 371 NEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYK-HGCKPNTVSYTALLNGLCQ 429

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G    A  +      D    +A  YS ++  L + G+ +E   +++EM  +G  P  V 
Sbjct: 430 HGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTPVE 489

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            N LI   C E+    A   ++E  ++GC  N +++  ++ G C+ 
Sbjct: 490 INLLIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQS 535



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 139/301 (46%), Gaps = 16/301 (5%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           +H  ++  KL +A  F E  Q++        I P  + +  +I  Y     +E A+++  
Sbjct: 213 IHVLVMANKLEKALRFLERMQLVG-------ITPNVVTYNCLIKGYCDLYQVEHAMELIA 265

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-----PDACSYNILIHGC 162
           EM           + T++     C    R+KE+  +MEK V      PD  +YN L+H  
Sbjct: 266 EMPFKGCPPDKVSYYTVMG--FLCQD-KRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHML 322

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
                 ++A +   E  +R  Q   V +  ++   C++ R+D A ++  +++      PD
Sbjct: 323 SKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMI-TKGCSPD 381

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + +++ GLC VG++  A  + ++M +   + +   Y++L++ L + G   E   ++ 
Sbjct: 382 VVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMN 441

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             +E    PN++TY+ ++ G  +E     A  ++ EM  KG    P+  N+++  LC + 
Sbjct: 442 TSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLEQ 501

Query: 343 K 343
           K
Sbjct: 502 K 502


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 150/304 (49%), Gaps = 13/304 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLK-----HDTRIVPKEIIFCNVIGFYGRARLLE 100
           +++ +  +++K+ ++K +D +  + H ++     HD  +    I    VI    R     
Sbjct: 9   SIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHD--LYSYNI----VINCLCRCSRFV 62

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
            AL +  +M  F  +  V   ++L+N      ++    +L   ME+    PD   YN +I
Sbjct: 63  IALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTII 122

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G      + DA ++FD M +  ++   VT+ +L+ GLC   R  +A +L  D M + ++
Sbjct: 123 DGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRD-MVMRDI 181

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   F ++I      G+ S A+ + EEM R  ++ D   Y+SLI+ L   GR +E   
Sbjct: 182 VPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQ 241

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +L  M  +GC P+ VTYN LI+GFCK +  +    +  EM  +G   + I+YN I+ G  
Sbjct: 242 MLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYF 301

Query: 340 KDGK 343
           + G+
Sbjct: 302 QAGR 305



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 131/246 (53%), Gaps = 5/246 (2%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           IVP  I F  VI  + +      A+++++EM+   V   V  +N+L+N     G++D  K
Sbjct: 181 IVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAK 240

Query: 139 ELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           ++  +M  K   PD  +YN LI+G   S+R+++  K+F EM +R L    +T+ T+I G 
Sbjct: 241 QMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGY 300

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
               R D A    ++I    + +P+ + ++ L+ GLC    +  AL + E M + +IE+D
Sbjct: 301 FQAGRPDAA----QEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELD 356

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+ +I  + K G   +   + + +  +G KP+ V+Y  +ISGFC++  ++ +  +  
Sbjct: 357 ITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYR 416

Query: 318 EMGDKG 323
           +M + G
Sbjct: 417 KMQEDG 422



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 125/263 (47%), Gaps = 5/263 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +I+  +I    +  L+  A+++FD M    V+     +N+L+      G+      L
Sbjct: 113 PDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARL 172

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
            + M  + + P+  ++  +I   V   +  +A K+++EM +R + P + T+ +LI GLC+
Sbjct: 173 MRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCM 232

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             RVDEA K   D+M      PD   + +LI G C    +     +  EM +  +  D  
Sbjct: 233 HGRVDEA-KQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTI 291

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+++I   F+AGR +    I   M  R   PN  TY+ L+ G C     E A  + + M
Sbjct: 292 TYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENM 348

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
                + +  +YN+++ G+CK G
Sbjct: 349 QKSEIELDITTYNIVIHGMCKIG 371


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 150/307 (48%), Gaps = 8/307 (2%)

Query: 39  PLKPFRYNLLHYDLIITKL-GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           P++P  Y    Y+ +I  L GR +  + +  +    +     +P  + +  ++    +  
Sbjct: 161 PVEPDAYT---YNTLIRGLCGRGRTSNALAVLEDMFRRGC--LPDVVTYTILLEATCKRS 215

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYN 156
             ++A+++ DEM        +  +N +LN     G+++   E  + +  Y   P+  SYN
Sbjct: 216 GYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYN 275

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           I++ G   + R EDA K+ +EM  +   P +VTF  LI  LC    V+ A+++ E  M  
Sbjct: 276 IVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQ-MPQ 334

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           Y   P+   +  L+   C   ++  A+   E MV      D   Y++L++AL + G  + 
Sbjct: 335 YGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDV 394

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +L ++K++GC P  ++YN +I G  K    + A  +LDEM  KG + + I+Y+ I  
Sbjct: 395 AIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIAS 454

Query: 337 GLCKDGK 343
           GLC++ +
Sbjct: 455 GLCREDR 461



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 3/226 (1%)

Query: 118 VKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           V  +N ++      G+LD  + L   M   V PDA +YN LI G     R  +A  V ++
Sbjct: 134 VMVYNAMVAGYCGAGQLDAARRLVADMP--VEPDAYTYNTLIRGLCGRGRTSNALAVLED 191

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M +R   P +VT+  L+   C      +A+KL ++ M      PD   +  ++ G+C  G
Sbjct: 192 MFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDE-MHDKGCAPDIVTYNVVLNGICQEG 250

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
            +  A+   + +     E +   Y+ ++  LF A R  +   +++EM  +GC PN VT+N
Sbjct: 251 RVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFN 310

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            LIS  C+    E A  +L++M   GC  N +SYN +L   CK  K
Sbjct: 311 MLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKK 356



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 132/267 (49%), Gaps = 11/267 (4%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +++  ++  Y  A  L+ A ++  +M    V+     +NTL+  +  CG+  R    
Sbjct: 132 PDVMVYNAMVAGYCGAGQLDAARRLVADMP---VEPDAYTYNTLI--RGLCGR-GRTSNA 185

Query: 141 FQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
             ++E        PD  +Y IL+         + A K+ DEM  +   P +VT+  ++ G
Sbjct: 186 LAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNG 245

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           +C E RV++A++  +++   Y  +P+   +  ++KGL        A  + EEM       
Sbjct: 246 ICQEGRVEDAMEFLKNLPS-YGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPP 304

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +   ++ LIS L + G       +L++M + GC PNS++YN L+  FCK++    A   +
Sbjct: 305 NVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFV 364

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
           + M  +GC  + +SYN +L  LC++G+
Sbjct: 365 ELMVSRGCYPDIVSYNTLLTALCRNGE 391



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 146/302 (48%), Gaps = 12/302 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           +++ Y+ ++     A   D  ++++     D  + P    +  +I G  GR R    AL 
Sbjct: 133 DVMVYNAMVAGYCGAGQLDAARRLVA----DMPVEPDAYTYNTLIRGLCGRGRT-SNALA 187

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTC---GKLDRMKELFQIMEKYVSPDACSYNILIHG 161
           + ++M        V  +  LL  + TC   G    MK L ++ +K  +PD  +YN++++G
Sbjct: 188 VLEDMFRRGCLPDVVTYTILL--EATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNG 245

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                R+EDA +    +     +P  V++  ++ GL    R ++A KL E+ M      P
Sbjct: 246 ICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEE-MAHKGCPP 304

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   F  LI  LC  G +  A+ V E+M +     ++  Y+ L+ A  K  + ++    +
Sbjct: 305 NVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFV 364

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           + M  RGC P+ V+YN L++  C+  + + A  +L ++ DKGC    ISYN ++ GL K 
Sbjct: 365 ELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKA 424

Query: 342 GK 343
           GK
Sbjct: 425 GK 426



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 99/186 (53%), Gaps = 15/186 (8%)

Query: 163 VVSRR--LEDAWKVFDEMVKRRLQPTLVTFG---TLIYGLCLELRVDEALKLKEDIMRVY 217
           V+ RR  L+DA ++ D +      P+    G    LI  LC   R  +A ++      + 
Sbjct: 76  VLVRRGELDDALRLVDSLAGLN-PPSPAAVGPCAALIKKLCASGRTADARRV------LA 128

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
              PD  V+ +++ G C  G+L  A  +  +M    +E DA  Y++LI  L   GR +  
Sbjct: 129 ASGPDVMVYNAMVAGYCGAGQLDAARRLVADM---PVEPDAYTYNTLIRGLCGRGRTSNA 185

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            A+L++M  RGC P+ VTY  L+   CK   ++ A  +LDEM DKGC  + ++YNV+L G
Sbjct: 186 LAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNG 245

Query: 338 LCKDGK 343
           +C++G+
Sbjct: 246 ICQEGR 251



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 136/297 (45%), Gaps = 36/297 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y++++  L  A+ +++ ++++ ++ H     P  + F  +I F  R  L+E A+++
Sbjct: 270 NTVSYNIVLKGLFTAERWEDAEKLMEEMAHKG-CPPNVVTFNMLISFLCRRGLVEPAMEV 328

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
            ++M                 P+  C                 +P++ SYN L+H     
Sbjct: 329 LEQM-----------------PQYGC-----------------TPNSLSYNPLLHAFCKQ 354

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
           +++  A +  + MV R   P +V++ TL+  LC    VD A++L    ++     P    
Sbjct: 355 KKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQ-LKDKGCSPVLIS 413

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + ++I GL   G+   AL + +EM    ++ D   YS++ S L +  R  E      +++
Sbjct: 414 YNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQ 473

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + G +P +  YNA++ G CK  +   A  +   M   GC  N  +Y +++ GL  +G
Sbjct: 474 DMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEG 530


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 135/283 (47%), Gaps = 41/283 (14%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDAC 153
           R R  + A  M   +   NV +    FNT++   L  GKL    EL++ M  K   PDA 
Sbjct: 276 RVRQADEARAMLGRVPELNVVL----FNTVIGGCLAEGKLAEATELYETMGLKGCQPDAH 331

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF----------------------- 190
           +Y+IL+HG     R+  A ++  EM K+   P +VT+                       
Sbjct: 332 TYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEM 391

Query: 191 ------------GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
                         +IY LC + R+DEA+ L ++ MR     PD   + ++I  LC   +
Sbjct: 392 SAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQE-MRSQGCNPDICSYNTIIYHLCNNEQ 450

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           +  A  + E ++ + +  +   Y+++I AL + GR  +   + KEM   GC  + V+YN 
Sbjct: 451 MEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNG 510

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           LI   CK+ + + +  +L+EM +KG K N +SYN+++  LCK+
Sbjct: 511 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKE 553



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 154/301 (51%), Gaps = 16/301 (5%)

Query: 45  YNLLHYDLIITKLGR----AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           Y++L + L   KLGR     ++  EM++            P  + +  V+  + +  + +
Sbjct: 333 YSILMHGL--CKLGRIGSAVRLLREMEK--------KGFAPNVVTYTIVLHSFCKNGMWD 382

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
               + +EMS+  + +  + +N ++      G++D    L Q M  +  +PD CSYN +I
Sbjct: 383 DTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTII 442

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +    + ++E+A  +F+ +++  +    +T+ T+I+ L  + R  +A++L ++++ ++  
Sbjct: 443 YHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMI-LHGC 501

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
             D   +  LIK +C  G +  +L + EEM    I+ +   Y+ LIS L K  R  +   
Sbjct: 502 SLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALE 561

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + K+M  +G  P+ VTYN LI+G CK     AA  +L+++ ++    + I+YN+++   C
Sbjct: 562 LSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHC 621

Query: 340 K 340
           K
Sbjct: 622 K 622



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 135/288 (46%), Gaps = 10/288 (3%)

Query: 57  LGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQM 116
           L RA+ F   ++++H+     R+ P    F        R    + AL +   M+      
Sbjct: 137 LPRARRFALYRRMVHR----DRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVP 192

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVF 175
               + T+++     G +     L  +++    + D  +++ ++ G     R+ +A ++ 
Sbjct: 193 DAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLV 252

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           D M+ +   P ++T+G L+ GLC   + DEA  +   +  +  V     +F ++I G  A
Sbjct: 253 DRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVV-----LFNTVIGGCLA 307

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G+L+ A  + E M     + DA  YS L+  L K GR      +L+EM+++G  PN VT
Sbjct: 308 EGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVT 367

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  ++  FCK   ++    +L+EM  KG   N   YN ++  LCKDG+
Sbjct: 368 YTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGR 415



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 123/255 (48%), Gaps = 5/255 (1%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV 148
           V G  G  R+ E A ++ D M +      V  +  LL       + D  + +   + +  
Sbjct: 236 VRGMCGLGRVRE-AARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPEL- 293

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
             +   +N +I GC+   +L +A ++++ M  +  QP   T+  L++GLC   R+  A++
Sbjct: 294 --NVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVR 351

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           L  + M      P+   +  ++   C  G       + EEM    + +++  Y+ +I AL
Sbjct: 352 LLRE-MEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYAL 410

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K GR +E   +++EM+ +GC P+  +YN +I   C  E  E A  + + + ++G  AN 
Sbjct: 411 CKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANG 470

Query: 329 ISYNVILGGLCKDGK 343
           I+YN I+  L +DG+
Sbjct: 471 ITYNTIIHALLRDGR 485



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 133/278 (47%), Gaps = 3/278 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  N++ Y +++    +  M+D+ + +L ++      +  +     +       R+ E
Sbjct: 359 KGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDE 418

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILI 159
            A+ +  EM S      +  +NT++       +++  + +F+ ++E+ V  +  +YN +I
Sbjct: 419 -AMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTII 477

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           H  +   R +DA ++  EM+       +V++  LI  +C +  VD +L L E+ M    +
Sbjct: 478 HALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEE-MAEKGI 536

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           KP+   +  LI  LC    +  AL + ++M+   +  D   Y++LI+ L K G  +    
Sbjct: 537 KPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALN 596

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           +L+++      P+ +TYN LIS  CK    + A  +L+
Sbjct: 597 LLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLN 634


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 128/244 (52%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y +   L    ++ + M +  VQ  V  ++ L+N      KLD   EL
Sbjct: 169 PSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANEL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++  + P++ S+  LI G     R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
              + +A  L  + M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 289 NGDLKQAQDLINE-MSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP   TY  +I+ FCK+ D      ++ EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEM 407

Query: 320 GDKG 323
              G
Sbjct: 408 QRDG 411



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 125/228 (54%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G++   + +F  + K+ + P   S+N L++G +    L + +++ 
Sbjct: 135 SLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E ++D+A +L ++++    + P+   F +LI G C 
Sbjct: 195 NAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLD-NGLVPNSVSFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 254 DGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGR 361



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 135/267 (50%), Gaps = 9/267 (3%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ + ++ +V  FNTL+N  +  G L+ 
Sbjct: 133 PASLYFFNILMHSFCKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M+   V PD  +Y++LI+G     +L+DA ++FDEM+   L P  V+F TLI 
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C + RVD A+++ + ++   ++ PD   + +LI GLC  G+L  A  +  EM    ++
Sbjct: 250 GHCKDGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLK 308

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI    K G         K M +   + + V Y ALISG C+E     A  +
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
           L EM   G K    +Y +I+   CK G
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 106/198 (53%), Gaps = 2/198 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           L+ A ++FDEM    +      F TL++     G++D   E++ Q++ + +SPD  +YN 
Sbjct: 222 LDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNT 281

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G   +  L+ A  + +EM  + L+P  +T+ TLI G C E  ++ A + ++ +++  
Sbjct: 282 LIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKE- 340

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N++ D   + +LI GLC  G    A  +  EM+   ++ + G Y+ +I+   K G     
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400

Query: 278 PAILKEMKERGCKPNSVT 295
             ++KEM+  G  P+ VT
Sbjct: 401 SKLMKEMQRDGYVPSVVT 418



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE +          ++ L+ +  K G      ++   + + G +P+ V++N L+
Sbjct: 119 LVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ K  D    F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 165/368 (44%), Gaps = 73/368 (19%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++  +++I +L +AK  DE   I   + H     P E+ FC++I   G+   ++ A ++
Sbjct: 441 NVMTVNIMIDRLCKAKKLDEACSIFEGMNHKI-CSPDEVTFCSLIDGLGKQGRVDDAYRL 499

Query: 106 FDEM--------SSFNVQMTVKFFNT-----------------------LLNPKLTC--- 131
           +++M        +     +   FF                         LLN  + C   
Sbjct: 500 YEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFK 559

Query: 132 -GKLDRMKELFQ-IMEKYVSPDACSYNILIHG---------------------CVV---- 164
            G+  + + LF+ I  +   PD  SY+ILIHG                     CV+    
Sbjct: 560 AGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHA 619

Query: 165 ----------SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
                     S ++  A+++ +EM  +  QPT+VT+G++I GL    R+DEA  L E+  
Sbjct: 620 YNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEE-A 678

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           +   ++ +  +++SLI G   VG +  A  + EE+++  +  +   ++ L+ AL KA   
Sbjct: 679 KSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEI 738

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           NE     + MK     PN +TY+ LI+G C+   F  AF    EM  +G K N I+Y  +
Sbjct: 739 NEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTM 798

Query: 335 LGGLCKDG 342
           + GL K G
Sbjct: 799 IAGLAKAG 806



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 152/311 (48%), Gaps = 7/311 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           ++ ++H L P   + + Y  +I  L +    DE  +I  Q++ + R VP    +  +I  
Sbjct: 292 HEIKSHGLLP---DDVTYTSMIGVLCKGNRLDEAVEIFEQMEQN-RNVPCAYAYNTMIMG 347

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDA 152
           YG A   + A  + +   +     +V  +N +L      G+L      F+ M+K  +P+ 
Sbjct: 348 YGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAAPNL 407

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN+LI     +  +E A+KV D M +  L P ++T   +I  LC   ++DEA  + E 
Sbjct: 408 STYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEG 467

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV-RDKIEMDAGIYSSLISALFKA 271
            M      PD   F SLI GL   G +  A  + E+M+  DKI  +A +Y+SLI + FK 
Sbjct: 468 -MNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIP-NAVVYTSLIKSFFKC 525

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           GRK +   I KEM  RGC P+    NA +    K  +      + +E+  +G   + +SY
Sbjct: 526 GRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSY 585

Query: 332 NVILGGLCKDG 342
           ++++ GL K G
Sbjct: 586 SILIHGLVKAG 596



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 149/305 (48%), Gaps = 9/305 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + F  +++ Y ++I  L +A    E  ++ + +K    ++        + GF    ++  
Sbjct: 576 RGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKV-N 634

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP----DACSYN 156
           +A Q+ +EM +   Q TV  + ++++      K+DR+ E + + E+  S     +   Y+
Sbjct: 635 KAYQLLEEMKTKGRQPTVVTYGSVIDG---LAKIDRLDEAYMLFEEAKSNGLELNVVIYS 691

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            LI G     R+++A+ + +E++++ L P + T+  L+  L     ++EAL   ++ M+ 
Sbjct: 692 SLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQN-MKN 750

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
               P+   ++ LI GLC V + + A    +EM +  ++ +   Y+++I+ L KAG   E
Sbjct: 751 LKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAE 810

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
             ++ +  K  G  P+S +YNA+I G         A+ I +E   KGC  +  +   +L 
Sbjct: 811 ASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGCNIHTKTCIALLD 870

Query: 337 GLCKD 341
            L KD
Sbjct: 871 ALQKD 875



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 131/270 (48%), Gaps = 9/270 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+  I    ++   ++  Q+L ++K   R  P  + + +VI    +   L+ A  +F+E 
Sbjct: 620 YNTFIDGFCKSGKVNKAYQLLEEMKTKGR-QPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 678

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME----KYVSPDACSYNILIHGCVVS 165
            S  +++ V  +++L++     GK+ R+ E + IME    K ++P+  ++N L+   V +
Sbjct: 679 KSNGLELNVVIYSSLIDG---FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKA 735

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             + +A   F  M   +  P  +T+  LI GLC   + ++A    ++ M+   +KP+   
Sbjct: 736 EEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQE-MQKQGLKPNTIT 794

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + ++I GL   G ++ A  + E    +    D+  Y+++I  L  + R  E   I +E +
Sbjct: 795 YTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETR 854

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            +GC  ++ T  AL+    K+E  E A  +
Sbjct: 855 MKGCNIHTKTCIALLDALQKDECLEQAAIV 884



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 134/305 (43%), Gaps = 24/305 (7%)

Query: 51  DLIITKLGRAKMFDEMQQILH----QLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMF 106
           DL+I  L RAK  D  Q I +    + K D  + P+          Y    L+      F
Sbjct: 96  DLVIGVLRRAK--DVNQAISYFRWTERKTDQALCPEA---------YDSLLLVMAKNVKF 144

Query: 107 DEMSSFNVQMTVKFFN----TLLNPKLTCGKLDRMKE---LFQIMEKY-VSPDACSYNIL 158
           D       +M++  F     T +   L+C K ++++E   L Q M K+   P   +Y  L
Sbjct: 145 DYFEQILGEMSIAGFGPSTKTCIELILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTL 204

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I      +  +    +F +M +   + ++  F T+I     E R+D AL L ++ M+   
Sbjct: 205 IGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDE-MKSNC 263

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           +  D  ++   I      G++ +A     E+    +  D   Y+S+I  L K  R +E  
Sbjct: 264 LHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAV 323

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            I ++M++    P +  YN +I G+     F+ A+++L+    +GC  + I+YN IL  L
Sbjct: 324 EIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCL 383

Query: 339 CKDGK 343
            K G+
Sbjct: 384 GKKGR 388


>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 418

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 126/228 (55%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++  +  G++   + +F  + K+ + P   S+N L++G +    L + +++ 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E ++D+A  L ++++    + P+G  F +LI G C 
Sbjct: 195 NAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDK-GLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 254 NGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGR 361



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 130/244 (53%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y +   L    ++ + M +  VQ  V  ++ L+N      K+D    L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++K + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 289 KGDLKQAQDLIDE-MIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP   TY  +I+ FCK+ D      +L EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407

Query: 320 GDKG 323
              G
Sbjct: 408 QRDG 411



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 136/267 (50%), Gaps = 9/267 (3%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ + ++ +V  FNTL+N  +  G L+ 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M+   V PD  +Y++LI+G     +++DA  +FDEM+ + L P  VTF TLI 
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   RVD A+++ + ++   ++ PD   + +LI GLC  G+L  A  + +EM+   ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK 308

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI    K G         K M +   + + V Y ALISG C+E     A  +
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
           L EM   G K    +Y +I+   CK G
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 2/198 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           ++ A  +FDEM    +      F TL++     G++D   E++ Q++ + +SPD  +YN 
Sbjct: 222 MDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 281

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G      L+ A  + DEM+ + L+P  +T+ TLI G C E  ++ A + ++ +++  
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKE- 340

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N++ D   + +LI GLC  G    A  +  EM+   ++ + G Y+ +I+   K G     
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400

Query: 278 PAILKEMKERGCKPNSVT 295
             +LKEM+  G  P+ VT
Sbjct: 401 SKLLKEMQRDGYMPSVVT 418



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE +          ++ L+ +  K G      ++   + + G +P+ V++N L+
Sbjct: 119 LVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ K  D    F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 149/297 (50%), Gaps = 6/297 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQ 104
           N + Y ++I     +   ++  ++  Q+K +   +P  +   N ++  Y +A L E A +
Sbjct: 399 NKVTYSVLIEGCCNSGNIEKASELYTQMKLNG--IPPSVFNVNSLLRGYLKAPLWEEASK 456

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
           +FDE     V   +  +N +++     GK+D    L   M  + + P+  SYN +I G  
Sbjct: 457 LFDEAVDCGVA-NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHC 515

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
               ++ A  VF +M+ R L+P +VT+  LI G   +   ++AL L + ++ + N+ P  
Sbjct: 516 RKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSL-NIAPTD 574

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             F ++I GLC VG++S A    +  + +        Y+S++    K G  +   A+ +E
Sbjct: 575 FTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYRE 634

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           M E G  PN VTY +LI+GFCK    + A    DEM +KG + +  +Y+ ++ G CK
Sbjct: 635 MCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCK 691



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 133/280 (47%), Gaps = 37/280 (13%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNIL 158
           E+AL +FD+M S N+  T   FNT++N     G++   ++ L   +E+   P   +YN +
Sbjct: 556 EKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSI 615

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           + G +    ++ A  V+ EM +  + P +VT+ +LI G C   R+D ALK +++ MR   
Sbjct: 616 VDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDE-MREKG 674

Query: 219 VKPDGQVFASLIKGLCA-----------------------------------VGELSLAL 243
           ++ D   +++LI G C                                    +  +  AL
Sbjct: 675 LELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAAL 734

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
              ++M+ D+I  D G Y++LI  L K GR      +  EM  +G  P+ +T++ L++G 
Sbjct: 735 VWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGL 794

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C +   E A  IL+EM  K    + + YN ++ G  ++G 
Sbjct: 795 CNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGN 834



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 147/299 (49%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y+++++ L +    DE   +L  + +   +VP  + + ++I  + R   ++ A  +
Sbjct: 468 NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQG-MVPNVVSYNDMILGHCRKGNMDMASSV 526

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           F +M + +++  V  ++ L++     G  ++  +LF Q++   ++P   ++N +I+G   
Sbjct: 527 FSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCK 586

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             ++ +A       ++    P+ +T+ +++ G   E  +D AL +  ++   + V P+  
Sbjct: 587 VGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCE-FGVSPNVV 645

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SLI G C    + LAL  ++EM    +E+D   YS+LI    K         +  E+
Sbjct: 646 TYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFEL 705

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            E G  PN + YN++ISGF    + EAA     +M +     +  +Y  ++ GL K+G+
Sbjct: 706 LEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGR 764



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 133/296 (44%), Gaps = 40/296 (13%)

Query: 85  IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM 144
           +F  ++  Y RA  +E A+  F+ M   +V   V + N LL   +    +  +++L+  M
Sbjct: 192 VFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKM 251

Query: 145 E-KYVSPDACSYNILIHGCVVSRRLEDAWKVF---------------------------- 175
             + +  D  + ++++  C+   R+E+A + F                            
Sbjct: 252 VLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNS 311

Query: 176 -------DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA- 227
                  +EM +R   P+  TF ++I     +  + EAL+LKE+++     KP   V A 
Sbjct: 312 NLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCG--KPMNLVVAT 369

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           SL+KG CA G L  AL +  ++  D +  +   YS LI     +G   +   +  +MK  
Sbjct: 370 SLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLN 429

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G  P+    N+L+ G+ K   +E A  + DE  D G  AN  +YN+++  LCK GK
Sbjct: 430 GIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGV-ANIFTYNIMMSWLCKGGK 484



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 106/237 (44%), Gaps = 37/237 (15%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           + P  + + ++I  + ++  ++ AL+  DEM    +++ V  ++ L++       ++  +
Sbjct: 640 VSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQ 699

Query: 139 ELF-QIMEKYVSP-----------------------------------DACSYNILIHGC 162
           +LF +++E  +SP                                   D  +Y  LI G 
Sbjct: 700 DLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGL 759

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
           +   RL  A  ++ EM+ + + P ++TF  L+ GLC + +++ A K+ E++ R  N+ P 
Sbjct: 760 LKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDR-KNMTPS 818

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
             ++ +LI G    G L  A  + +EM+   +  D   Y  LI+  FK  R    P+
Sbjct: 819 VLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKGDRSLSRPS 875


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 149/297 (50%), Gaps = 6/297 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQ 104
           N + Y ++I     +   ++  ++  Q+K +   +P  +   N ++  Y +A L E A +
Sbjct: 359 NKVTYSVLIEGCCNSGNIEKASELYTQMKLNG--IPPSVFNVNSLLRGYLKAPLWEEASK 416

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
           +FDE     V   +  +N +++     GK+D    L   M  + + P+  SYN +I G  
Sbjct: 417 LFDEAVDCGVA-NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHC 475

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
               ++ A  VF +M+ R L+P +VT+  LI G   +   ++AL L + ++ + N+ P  
Sbjct: 476 RKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSL-NIAPTD 534

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             F ++I GLC VG++S A    +  + +        Y+S++    K G  +   A+ +E
Sbjct: 535 FTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYRE 594

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           M E G  PN VTY +LI+GFCK    + A    DEM +KG + +  +Y+ ++ G CK
Sbjct: 595 MCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCK 651



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 133/280 (47%), Gaps = 37/280 (13%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNIL 158
           E+AL +FD+M S N+  T   FNT++N     G++   ++ L   +E+   P   +YN +
Sbjct: 516 EKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSI 575

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           + G +    ++ A  V+ EM +  + P +VT+ +LI G C   R+D ALK +++ MR   
Sbjct: 576 VDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDE-MREKG 634

Query: 219 VKPDGQVFASLIKGLCA-----------------------------------VGELSLAL 243
           ++ D   +++LI G C                                    +  +  AL
Sbjct: 635 LELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAAL 694

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
              ++M+ D+I  D G Y++LI  L K GR      +  EM  +G  P+ +T++ L++G 
Sbjct: 695 VWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGL 754

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C +   E A  IL+EM  K    + + YN ++ G  ++G 
Sbjct: 755 CNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGN 794



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 147/299 (49%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y+++++ L +    DE   +L  + +   +VP  + + ++I  + R   ++ A  +
Sbjct: 428 NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQG-MVPNVVSYNDMILGHCRKGNMDMASSV 486

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           F +M + +++  V  ++ L++     G  ++  +LF Q++   ++P   ++N +I+G   
Sbjct: 487 FSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCK 546

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             ++ +A       ++    P+ +T+ +++ G   E  +D AL +  ++   + V P+  
Sbjct: 547 VGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCE-FGVSPNVV 605

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SLI G C    + LAL  ++EM    +E+D   YS+LI    K         +  E+
Sbjct: 606 TYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFEL 665

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            E G  PN + YN++ISGF    + EAA     +M +     +  +Y  ++ GL K+G+
Sbjct: 666 LEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGR 724



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 133/296 (44%), Gaps = 40/296 (13%)

Query: 85  IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM 144
           +F  ++  Y RA  +E A+  F+ M   +V   V + N LL   +    +  +++L+  M
Sbjct: 152 VFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKM 211

Query: 145 E-KYVSPDACSYNILIHGCVVSRRLEDAWKVF---------------------------- 175
             + +  D  + ++++  C+   R+E+A + F                            
Sbjct: 212 VLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNS 271

Query: 176 -------DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA- 227
                  +EM +R   P+  TF ++I     +  + EAL+LKE+++     KP   V A 
Sbjct: 272 NLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINC--GKPMNLVVAT 329

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           SL+KG CA G L  AL +  ++  D +  +   YS LI     +G   +   +  +MK  
Sbjct: 330 SLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLN 389

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G  P+    N+L+ G+ K   +E A  + DE  D G  AN  +YN+++  LCK GK
Sbjct: 390 GIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGV-ANIFTYNIMMSWLCKGGK 444



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 106/237 (44%), Gaps = 37/237 (15%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           + P  + + ++I  + ++  ++ AL+  DEM    +++ V  ++ L++       ++  +
Sbjct: 600 VSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQ 659

Query: 139 ELF-QIMEKYVSP-----------------------------------DACSYNILIHGC 162
           +LF +++E  +SP                                   D  +Y  LI G 
Sbjct: 660 DLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGL 719

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
           +   RL  A  ++ EM+ + + P ++TF  L+ GLC + +++ A K+ E++ R  N+ P 
Sbjct: 720 LKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDR-KNMTPS 778

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
             ++ +LI G    G L  A  + +EM+   +  D   Y  LI+  FK  R    P+
Sbjct: 779 VLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKGDRSLSRPS 835


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 119/240 (49%), Gaps = 2/240 (0%)

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
           M + M S      +  +NTL+      G L   +EL   M+ K   P+  +Y ILI    
Sbjct: 1   MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFC 60

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              RLE+A  V DEM  + L    V +  LI  LC + +V +AL +  D M     KPD 
Sbjct: 61  KEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGD-MSSKGCKPDI 119

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             F SLI GLC V +   ALG+ ++M+ + +  +   Y++LI A  + G   E   ++ +
Sbjct: 120 FTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVND 179

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M  RGC  + +TYN LI   C+  + E    + ++M  KG   N IS N+++ GLC+ G 
Sbjct: 180 MLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGN 239



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 146/298 (48%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y ++I +  +    +E + +L ++     +    + +  +I    +   ++ AL M
Sbjct: 48  NVITYTILIDRFCKEGRLEEARNVLDEMS-GKGLALNAVGYNCLISALCKDEKVQDALNM 106

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           F +MSS   +  +  FN+L+       K +    L+Q ++ + V  +  +YN LIH  + 
Sbjct: 107 FGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLR 166

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +++A K+ ++M+ R      +T+  LI  LC    +++ L L ED+M    + P+  
Sbjct: 167 RGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMS-KGLNPNNI 225

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
               LI GLC  G +  AL    +M+   +  D   Y+SLI+ L K GR  E   +  ++
Sbjct: 226 SCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKL 285

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +  G  P+++TYN LIS  CKE  F+ A  +L    D G   N +++ +++    K+G
Sbjct: 286 QVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 343



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 127/246 (51%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           L  A ++ +EM     +  V  +  L++     G+L+  + +   M  K ++ +A  YN 
Sbjct: 30  LVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNC 89

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI       +++DA  +F +M  +  +P + TF +LI+GLC   + +EAL L +D M + 
Sbjct: 90  LISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQD-MLLE 148

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            V  +   + +LI      G +  AL +  +M+     +D   Y+ LI AL +AG   + 
Sbjct: 149 GVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKG 208

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            A+ ++M  +G  PN+++ N LI+G C+  + + A   L +M  +G   + ++YN ++ G
Sbjct: 209 LALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLING 268

Query: 338 LCKDGK 343
           LCK G+
Sbjct: 269 LCKTGR 274



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 121/271 (44%), Gaps = 3/271 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K    N + Y+ +I+ L + +   +   +   +       P    F ++I    +    E
Sbjct: 78  KGLALNAVGYNCLISALCKDEKVQDALNMFGDMS-SKGCKPDIFTFNSLIFGLCKVNKFE 136

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILI 159
            AL ++ +M    V      +NTL++  L  G +    +L   M     P D  +YN LI
Sbjct: 137 EALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLI 196

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
                +  +E    +F++M+ + L P  ++   LI GLC    +  AL+   D++    +
Sbjct: 197 KALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIH-RGL 255

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   + SLI GLC  G    AL + +++  + I  DA  Y++LIS   K G  ++   
Sbjct: 256 TPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHL 315

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
           +L    + G  PN VT+  L+S F KE D E
Sbjct: 316 LLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 346


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 124/247 (50%), Gaps = 2/247 (0%)

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSY 155
           R+   A+ +F  MS   V      +N L+N  +   ++D    +F +M K+   P+  SY
Sbjct: 379 RVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSY 438

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N LI G       E A  +   M+K R  PTLVT+  +I G C     D A+++ E +M+
Sbjct: 439 NELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLE-LMK 497

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
               +PD   +  LI G C + ++ LA G+  EM+   +  +   Y++LIS   K  + +
Sbjct: 498 ANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLD 557

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
               +L+ MK  GC+PN  TYN LI G  K+ +F  A  +   M ++    + ++Y+ ++
Sbjct: 558 CAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVI 617

Query: 336 GGLCKDG 342
            GLC +G
Sbjct: 618 NGLCNNG 624



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 151/331 (45%), Gaps = 35/331 (10%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NLL Y+ +I  L +     + + I++++   + + P    + ++I  Y R R L+ A ++
Sbjct: 227 NLLIYNSVINALCKDGNVRDAESIINKV-FKSGMKPDTFTYTSMILGYCRNRDLDSAFEI 285

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           F+ M     +     ++TL+N     G+++   +    M ++ V P   ++   I     
Sbjct: 286 FNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCD 345

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG---------------------------- 196
             R+EDAWK+F +M K+  +P + T+ +LI G                            
Sbjct: 346 MGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMSRDGVVPNTVTYNA 405

Query: 197 ----LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
               L   + +D AL +  ++M  +   P+   +  LI+G C +G+   A+ +   M++ 
Sbjct: 406 LMNVLMENMEIDSAL-IVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKG 464

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
           +       Y+ +I     +G  +    +L+ MK  GC+P+  +Y  LISGFCK    E A
Sbjct: 465 RPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELA 524

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             + +EM D+G   N ++Y  ++ G CKD K
Sbjct: 525 SGMFNEMMDRGLCPNEVTYTALISGYCKDEK 555



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 123/274 (44%), Gaps = 35/274 (12%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
           E+A+ M   M       T+  +N ++      G  D    + ++M+     PD  SY  L
Sbjct: 452 EKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTEL 511

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR--- 215
           I G     ++E A  +F+EM+ R L P  VT+  LI G C + ++D A ++ E + R   
Sbjct: 512 ISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGC 571

Query: 216 -----VYNV--------------------------KPDGQVFASLIKGLCAVGELSLALG 244
                 YNV                           PD   ++++I GLC  G + LAL 
Sbjct: 572 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALE 631

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           +  +MV+     +   YSSLI AL + GR  E   +  E+K++G  P+ VTY  +I    
Sbjct: 632 MFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCV 691

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
                + AF  L EM + GC+    +Y+V++ GL
Sbjct: 692 MSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGL 725



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 129/296 (43%), Gaps = 51/296 (17%)

Query: 94  GRARL-----------LERALQMFDEMSSFNVQMTVKFFNTLL----NPKLTCGKLDRMK 138
           GRAR+           + +AL   D  S    +M +  + TLL       +T   +DR  
Sbjct: 158 GRARIHMIKSCSNKAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDR-- 215

Query: 139 ELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
              QI+ + + P+   YN +I+       + DA  + +++ K  ++P   T+ ++I G C
Sbjct: 216 -YHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYC 274

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
               +D A ++  + M     +P+   +++LI GLC  G ++ AL    EM R  +    
Sbjct: 275 RNRDLDSAFEIF-NRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTV 333

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCK---------------------------- 290
             +++ I AL   GR  +   I  +MK++GCK                            
Sbjct: 334 HTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMSR 393

Query: 291 ----PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
               PN+VTYNAL++   +  + ++A  + + MG  GC  N  SYN ++ G C  G
Sbjct: 394 DGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIG 449



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 72/119 (60%)

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +L+  L  +   S  +    +++R+ ++ +  IY+S+I+AL K G   +  +I+ ++
Sbjct: 195 TYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKV 254

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + G KP++ TY ++I G+C+  D ++AF I + M ++GC+ N  +Y+ ++ GLC  G+
Sbjct: 255 FKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGR 313



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 134/298 (44%), Gaps = 16/298 (5%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R N+  Y+++I  L +   F   ++ L ++  + +I P  + +  VI        +  AL
Sbjct: 572 RPNVQTYNVLIHGLTKQNNFSGAEE-LCKVMLEEKISPDVVTYSTVINGLCNNGAIPLAL 630

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
           +MF++M        +  +++L+      G+++  +E+F  ++K  + PD  +Y  +I  C
Sbjct: 631 EMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVC 690

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
           V+S +++ A+    EM+    QPTL T+  LI GL  E+   + + L           P+
Sbjct: 691 VMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVAL-----------PN 739

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
               ++    +     +S+   +  ++     E+   +Y +L+S L ++GR  E   + +
Sbjct: 740 AASTSTFDDQIINKDVISV---LSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLYR 796

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            M  +   PN  TY   +    +    + A  +   M D+ C+ +   Y  ++  LC+
Sbjct: 797 SMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQ 854


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 151/302 (50%), Gaps = 13/302 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y +++          +M  +   +  D  I P    F  +I  Y    +L++A+ +
Sbjct: 358 NVFSYTIMLNGYATKGCLVDMTDLFDLMLGDG-IAPDIYTFNVLIKAYANCGMLDKAMII 416

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           F+EM    V+  V  + T++      GK+D   E F Q++++ V+PD  +Y+ LI G   
Sbjct: 417 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCT 476

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L  A ++  E++   +   +V F ++I  LC   RV +A  + +  + V  + P   
Sbjct: 477 HGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNV-GLHPTAV 535

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           V++ L+ G C VG++  AL V + MV   IE +  +Y +L++   K GR +E  ++ +EM
Sbjct: 536 VYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREM 595

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTI-----LDEMGDKGCKANPISYNVILGGLC 339
            ++G KP+++ YN +I G      FEA  T+       EM + G   N  +YN++L GL 
Sbjct: 596 LQKGIKPSTILYNIIIDGL-----FEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLF 650

Query: 340 KD 341
           K+
Sbjct: 651 KN 652



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 143/299 (47%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y+ +I        + E  ++  +++  + I+P  +    ++G   +   ++ A  +
Sbjct: 288 NNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS-ILPDVVTLSMLMGSLCKYGKIKEARDV 346

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           FD M+       V  +  +LN   T G L  M +LF +M    ++PD  ++N+LI     
Sbjct: 347 FDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYAN 406

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L+ A  +F+EM    ++P +VT+ T+I  LC   ++D+A++ K + M    V PD  
Sbjct: 407 CGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME-KFNQMIDQGVAPDKY 465

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LI+G C  G L  A  +  E++ + + +D   +SS+I+ L K GR  +   I    
Sbjct: 466 AYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLT 525

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  P +V Y+ L+ G+C     E A  + D M   G + N + Y  ++ G CK G+
Sbjct: 526 VNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGR 584



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 152/312 (48%), Gaps = 8/312 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF-CNVIG 91
           N+   H +KP   +++ Y  +I  L R    D+  +  +Q+  D  + P +  + C + G
Sbjct: 418 NEMRDHGVKP---DVVTYRTVIAALCRIGKMDDAMEKFNQMI-DQGVAPDKYAYHCLIQG 473

Query: 92  FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSP 150
           F     LL +A ++  E+ +  + + + FF++++N     G++   + +F +     + P
Sbjct: 474 FCTHGSLL-KAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHP 532

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
            A  Y++L+ G  +  ++E A +VFD MV   ++P  V +GTL+ G C   R+DE L L 
Sbjct: 533 TAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLF 592

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
            ++++   +KP   ++  +I GL   G    A     EM    I M+   Y+ ++  LFK
Sbjct: 593 REMLQ-KGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFK 651

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
               +E   + KE++    K N +T N +I+G  +    E A  +   +   G     ++
Sbjct: 652 NRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVT 711

Query: 331 YNVILGGLCKDG 342
           Y++++  L K+G
Sbjct: 712 YSIMITNLIKEG 723



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 98/204 (48%), Gaps = 10/204 (4%)

Query: 146 KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
           + +SP + +Y IL+  C  + R E A   F ++++  L+  ++    L+ G C   R DE
Sbjct: 105 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDE 164

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM------DAG 259
           AL +           PD   ++ L+K LC  G+     G  ++++R   E       D  
Sbjct: 165 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGK----SGQADDLLRMMAEGGAVCSPDVV 220

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YS++I   FK G  N+   + KEM +RG  P+ VTY++++   CK    + A   L +M
Sbjct: 221 AYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQM 280

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
            +KG   N  +YN ++ G    G+
Sbjct: 281 VNKGVLPNNWTYNNLIYGYSSTGQ 304



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 136/308 (44%), Gaps = 14/308 (4%)

Query: 46  NLLHYDLI--------ITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           N +H D++        + KLGR     + Q I   L  +  + P  +++  ++  Y    
Sbjct: 493 NGMHLDIVFFSSIINNLCKLGRVM---DAQNIF-DLTVNVGLHPTAVVYSMLMDGYCLVG 548

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYN 156
            +E+AL++FD M S  ++     + TL+N     G++D    LF ++++K + P    YN
Sbjct: 549 KMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYN 608

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           I+I G   + R   A   F EM +  +     T+  ++ GL      DEA+ L ++ +R 
Sbjct: 609 IIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKE-LRA 667

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
            NVK +     ++I G+     +  A  +   + R  +      YS +I+ L K G   E
Sbjct: 668 MNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEE 727

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +   M+  GC+P+S   N ++    K+ +   A   L ++ ++      ++  +++ 
Sbjct: 728 AEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVD 787

Query: 337 GLCKDGKC 344
                G C
Sbjct: 788 LFSSKGTC 795


>gi|255549371|ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545176|gb|EEF46686.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 613

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 157/304 (51%), Gaps = 3/304 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + N++ Y+ ++    +   F+ + ++L  ++ D ++V     +  +I +YG +  + 
Sbjct: 244 KGIKPNVVTYNTLVNAYIKIMDFEGVNEMLRLMEMD-KVVYNAATYTLLIEWYGSSGKIA 302

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
            A ++F++M    V+  +  F ++++ +   G + R   LF ++ E+ +  +A +Y  LI
Sbjct: 303 EAEKVFEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHTYGALI 362

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           HG   S +L+ A  + +EM  + L   LV F TLI G C +  +DEAL++ +D+M     
Sbjct: 363 HGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMIDEALRM-QDVMEKKGF 421

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           + D   + ++  GLC +     A      MV   ++ +A  ++ +I    K G   E   
Sbjct: 422 ENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLVEAER 481

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + ++MK++G KPN VTYN LI G+ K+   + A+ + DEM   G  ++  +Y  ++ G C
Sbjct: 482 VFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESIGMTSDIYTYTTLVHGEC 541

Query: 340 KDGK 343
             GK
Sbjct: 542 VFGK 545



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 140/286 (48%), Gaps = 15/286 (5%)

Query: 62  MFDEMQQILHQLKHDT-RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           MF+E  ++   + H+  +I  +  I C  +    R+  +  +L  F +M  F V +TV  
Sbjct: 160 MFEEGFKVFDYMVHNGLKIDDRSCIVC--LLALKRSDQMVMSLGFFKKMVEFKVDVTVYS 217

Query: 121 FNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
              +++     G+++R K+L  ++  K + P+  +YN L++  +     E      +EM+
Sbjct: 218 MTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGV----NEML 273

Query: 180 KRRLQPTLVTFGTLIYGLCLEL-----RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
            R ++   V +    Y L +E      ++ EA K+ E ++    V+ D  VF S+I   C
Sbjct: 274 -RLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLE-RGVEADIHVFTSIISWQC 331

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
            +G +  A  + +E+    +  +A  Y +LI     +G+ +    ++ EM+ +G   N V
Sbjct: 332 KLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLV 391

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            +N LI+G+CK+   + A  + D M  KG + +  +YN I GGLCK
Sbjct: 392 IFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCK 437



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 143/333 (42%), Gaps = 40/333 (12%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI-IFCNVIGFYGRARLLERAL 103
           YN   Y L+I   G +    E +++  ++    R V  +I +F ++I +  +   ++RA 
Sbjct: 283 YNAATYTLLIEWYGSSGKIAEAEKVFEKMLE--RGVEADIHVFTSIISWQCKLGNMKRAF 340

Query: 104 QMFDE-----------------------------------MSSFNVQMTVKFFNTLLNPK 128
            +FDE                                   M S  + M +  FNTL+N  
Sbjct: 341 ALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFNTLINGY 400

Query: 129 LTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
              G +D    +  +MEK     D  +YN +  G     R E+A +    MV++ + P  
Sbjct: 401 CKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNA 460

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           V+F  +I   C E  + EA ++ +D M+    KP+   + +LI G    G+L  A  +K+
Sbjct: 461 VSFTIMIDIHCKEGNLVEAERVFQD-MKKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKD 519

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           EM    +  D   Y++L+      G+  E   +L E+  +G   + VTY A+ISG  KE 
Sbjct: 520 EMESIGMTSDIYTYTTLVHGECVFGKVEEALTLLNEVCRKGLAISIVTYTAIISGLSKEG 579

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             E AF + DEM   G   +   Y  ++  L K
Sbjct: 580 RSEEAFRLYDEMMAAGLTPDDRVYTSLVANLHK 612



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 7/204 (3%)

Query: 142 QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI--YGLCL 199
           +++E  V     S  I+I G     R+E A  +  EM  + ++P +VT+ TL+  Y   +
Sbjct: 205 KMVEFKVDVTVYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIM 264

Query: 200 ELR-VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
           +   V+E L+L E    VYN       +  LI+   + G+++ A  V E+M+   +E D 
Sbjct: 265 DFEGVNEMLRLMEMDKVVYN----AATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADI 320

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
            +++S+IS   K G      A+  E+ ERG   N+ TY ALI G C     +AA  +++E
Sbjct: 321 HVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNE 380

Query: 319 MGDKGCKANPISYNVILGGLCKDG 342
           M  +G   N + +N ++ G CK G
Sbjct: 381 MQSQGLDMNLVIFNTLINGYCKKG 404



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 53/106 (50%)

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           ++ ++LG  ++MV  K+++     + +I  L K GR      ++ EM  +G KPN VTYN
Sbjct: 195 QMVMSLGFFKKMVEFKVDVTVYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYN 254

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            L++ + K  DFE    +L  M       N  +Y +++      GK
Sbjct: 255 TLVNAYIKIMDFEGVNEMLRLMEMDKVVYNAATYTLLIEWYGSSGK 300


>gi|255660904|gb|ACU25621.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 484

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 164/321 (51%), Gaps = 15/321 (4%)

Query: 35  TEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVPKEII 85
           T  H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +   E +
Sbjct: 24  TSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDM 82

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIM 144
           +  +I  YG+  +++ +++MF +M    V+ T+K +N L    L  G+    K  F +++
Sbjct: 83  WVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKAILRRGRYMMAKRYFNKML 142

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
            + + P   ++N++I G  +S ++E A + F++M  R + P +VT+ T+I G     +++
Sbjct: 143 SEGIEPARHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKME 202

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  YS+L
Sbjct: 203 EAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTL 261

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           +  L  AG+  E  +ILKEM ++   P  NS+ +  LIS  C   + +AA  +L  M   
Sbjct: 262 LPGLCNAGKMIEARSILKEMMDKYLAPTDNSI-FMRLISSQCNSGNLDAAADVLKAMIRL 320

Query: 323 GCKANPISYNVILGGLCKDGK 343
                   Y V++   CK G+
Sbjct: 321 SVPTEAGHYGVLIENFCKAGQ 341



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 129/263 (49%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F++M S  +   V  +NT++N      K++  ++ F  M+ + 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   +++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAGKMIEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + +++M  Y    D  +F  LI   C  G L  A  V + M+R  +  +AG Y  LI  
Sbjct: 276 SILKEMMDKYLAPTDNSIFMRLISSQCNSGNLDAAADVLKAMIRLSVPTEAGHYGVLIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             KAG+ ++   +L ++ E+    +P S        YN +I   C       A  ++ ++
Sbjct: 336 FCKAGQYDQAVKLLDKLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQAAKAEALVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +P + N ++ G  ++G
Sbjct: 396 LKLGVQ-DPTALNTLIRGHSQEG 417



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 136/297 (45%), Gaps = 18/297 (6%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D ++  + P   +++ Y+ +I    R K  +E ++   ++K    I P  + +  +I  Y
Sbjct: 175 DMKSREISP---DVVTYNTMINGYYRVKKMEEAEKYFVEMK-GRNIEPTVVTYTTLIKGY 230

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSP-D 151
                ++ AL++ +EM  F ++     ++TLL      GK+   + +  ++M+KY++P D
Sbjct: 231 VSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAGKMIEARSILKEMMDKYLAPTD 290

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-- 209
              +  LI     S  L+ A  V   M++  +      +G LI   C   + D+A+KL  
Sbjct: 291 NSIFMRLISSQCNSGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKAGQYDQAVKLLD 350

Query: 210 ----KEDIMR---VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
               K+ I+R     +++P    +  +I+ LC  G+ + A  +  ++++  ++ D    +
Sbjct: 351 KLIEKDIILRPQSTLHLEPSA--YNPMIEYLCNNGQAAKAEALVRQLLKLGVQ-DPTALN 407

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           +LI    + G  +    +LK M  R        Y++L+  + K+ +   A   LD M
Sbjct: 408 TLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYDSLVQSYLKKNEPADAKAALDSM 464


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 138/280 (49%), Gaps = 38/280 (13%)

Query: 81  PKEIIFCNVIGF-YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F N++   + +   + RA  +FD ++ + ++ +V  FNTL+N  +  G LD    
Sbjct: 133 PASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 192

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL--------------- 183
           L   M    V PD  +Y++LI+G     ++++A ++F+EM+ R L               
Sbjct: 193 LKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHC 252

Query: 184 --------------------QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
                                P L+T+ TLIYGLC +  + +   L ++ M +  +KPD 
Sbjct: 253 KNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDE-MSMNGLKPDK 311

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + +LI G C  G+L  A   ++ M+++ I +D   Y++L+S L + GR ++   + +E
Sbjct: 312 ITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFRE 371

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           M   G KP++ TY  +I+ FCK+ D   A  +L EM   G
Sbjct: 372 MLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDG 411



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 123/228 (53%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN +++     G++ R + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
             M    +QP + T+  LI GLC E +VDEA +L  +++    + P+G  F +LI   C 
Sbjct: 195 SAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLD-RGLVPNGVTFTTLIDVHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G +  A+ + ++M+      D   Y++LI  L K G   +  A++ EM   G KP+ +T
Sbjct: 254 NGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGR 361



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 108/222 (48%), Gaps = 2/222 (0%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           H + + P    +  +I    +   ++ A ++F+EM    +      F TL++     G +
Sbjct: 198 HASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMV 257

Query: 135 DRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           D   E++ Q++ +  SPD  +YN LI+G      L+    + DEM    L+P  +T+ TL
Sbjct: 258 DSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTL 317

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G C E  ++ A + ++ +++  +++ D   + +L+ GLC  G    A  +  EM+   
Sbjct: 318 IDGCCKEGDLETAFEFRKRMIK-ESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVG 376

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
           ++ D G Y+ +I+   K G       +LKEM+  G  P  VT
Sbjct: 377 LKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVPCVVT 418


>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Cucumis sativus]
          Length = 481

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 149/289 (51%), Gaps = 13/289 (4%)

Query: 64  DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT 123
           DE ++I  ++K    ++P  I + +++  +  A  LE + ++F+EM    VQ  +  FN 
Sbjct: 180 DEAKEIFEEMKAQG-MIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNV 238

Query: 124 LLNPKLTC-----GKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           L++  + C     G L   ++LF  M  K    +  SY ILI+G     ++E+A  +++E
Sbjct: 239 LID--ILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNE 296

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M +   +P + T+ TL+ GL    +V +A KL   +M+   +  D  ++   + GLC  G
Sbjct: 297 MPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLF-GVMKASGISVDSCIYVIFLDGLCKNG 355

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
            L  A+ +  E+     ++D   YS LI  L KAG+        K++ + G +PN VT N
Sbjct: 356 VLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCN 415

Query: 298 ALISGFCKEEDFEAA---FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +I GFC+ E  + A   F  +++M + GC  + I+YN +L G C+  K
Sbjct: 416 IMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNK 464



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 96/207 (46%), Gaps = 7/207 (3%)

Query: 143 IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR 202
           +M  +  P   S+N L+ G          + ++++M    L P L T   L   LC   R
Sbjct: 81  MMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSPDLFTLNILANCLCNLNR 140

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIK---GLCAVGELSLALGVKEEMVRDKIEMDAG 259
           V E L     I+R   + PD   + +LIK   GLC VG    A  + EEM    +  +  
Sbjct: 141 VSEGLAAMTGILRRGYI-PDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMKAQGMIPNVI 199

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE---EDFEAAFTIL 316
            YSSL+     AG+  E   +  EM ++G +PN V +N LI   CKE    D  +A  + 
Sbjct: 200 SYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKIGDLSSARKLF 259

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
             M  KGC+ N ISY +++ G CK  K
Sbjct: 260 LSMPSKGCEHNEISYTILINGYCKIWK 286



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 4/177 (2%)

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
            A+  FD M++    P + +F  L+ GL       +   L    MR+  + PD      L
Sbjct: 73  QAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNK-MRLAGLSPDLFTLNIL 131

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF---KAGRKNEFPAILKEMKE 286
              LC +  +S  L     ++R     D   Y++LI  L+   K G ++E   I +EMK 
Sbjct: 132 ANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMKA 191

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G  PN ++Y++L+ GFC     E +  + +EM D+G + N + +NV++  LCK+GK
Sbjct: 192 QGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGK 248



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----VSP 150
           +A  +E A + F ++S   +Q  V   N +++      ++D+   LF+ MEK      +P
Sbjct: 388 KAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTP 447

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
           D  +YN L+ G   S +LE+   +  +M KR
Sbjct: 448 DIITYNTLLRGFCESNKLEEVVNLLHKMFKR 478


>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
          Length = 601

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 169/376 (44%), Gaps = 47/376 (12%)

Query: 5   SIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFD 64
           +I LA L R   D + AL L  + +      EAHP    R N + Y +++  L  ++  D
Sbjct: 80  NIVLAALCRRGGDLRQALSLLADMS-----REAHP--AARPNAVSYTMVMRGLCASRRTD 132

Query: 65  EMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124
           E   +L  ++  + +    + +  +I     A  L+ AL++  EM    V   V  ++ L
Sbjct: 133 EAVALLRSMQA-SGVRADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCL 191

Query: 125 LNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
           L      G+   + ++F+ M +  V PD   +   I       R+  A KV D MV+R L
Sbjct: 192 LRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGL 251

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
           +P +VT+  LI  LC E  V EAL L+ + M    V PD   + +LI GL  V E+  A+
Sbjct: 252 EPNVVTYNVLINCLCKEGSVREALALRNE-MDDKGVAPDVVTYNTLIAGLSGVLEMDGAM 310

Query: 244 GVKEEMVRDK--IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC------------ 289
           G+ EEM++    +E D   ++S+I  L K GR  +  ++ + M ERGC            
Sbjct: 311 GLLEEMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIG 370

Query: 290 -----------------------KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326
                                  +P+S TY+ LI+GF K  + + A   L  M  +G +A
Sbjct: 371 GFLRVHKVNMAMNLMSELISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRA 430

Query: 327 NPISYNVILGGLCKDG 342
               Y  +L  LC+ G
Sbjct: 431 ELFHYIPLLAALCQLG 446



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 5/197 (2%)

Query: 151 DACSYNILIHG-CVVSRRLEDAWKVFDEMVKRR---LQPTLVTFGTLIYGLCLELRVDEA 206
           DA SYNI++   C     L  A  +  +M +      +P  V++  ++ GLC   R DEA
Sbjct: 75  DAVSYNIVLAALCRRGGDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTDEA 134

Query: 207 LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266
           + L    M+   V+ D   + +LI+GLC   EL  AL +  EM    +  +  +YS L+ 
Sbjct: 135 VALLRS-MQASGVRADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLLR 193

Query: 267 ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326
              ++GR  +   + +EM   G +P+ + +   I   CK+     A  + D M  +G + 
Sbjct: 194 GYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEP 253

Query: 327 NPISYNVILGGLCKDGK 343
           N ++YNV++  LCK+G 
Sbjct: 254 NVVTYNVLINCLCKEGS 270



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 161/369 (43%), Gaps = 72/369 (19%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  ++    R+  + ++ ++  ++     + P  I+F   I    +   + +A+++
Sbjct: 184 NVIVYSCLLRGYCRSGRWQDVSKVFEEMSR-LGVEPDVIMFTGFIDDLCKKGRIGKAVKV 242

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            D M    ++  V  +N L+N     G +     L   M+ K V+PD  +YN LI G   
Sbjct: 243 KDIMVQRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSG 302

Query: 165 SRRLEDAWKVFDEMVK--RRLQPTLVTFGTLIYGLCLELRVDEALKLKE----------- 211
              ++ A  + +EM++    ++P +VTF ++I+GLC   R+ +A+ ++E           
Sbjct: 303 VLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNL 362

Query: 212 --------DIMRVYNV---------------KPDGQVFASLIKGLCAVGELSLA------ 242
                     +RV+ V               +PD   ++ LI G   + E+  A      
Sbjct: 363 VTYNYLIGGFLRVHKVNMAMNLMSELISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRT 422

Query: 243 ----------------------LGVKEE--MVRDKIEMDAGI----YSSLISALFKAGRK 274
                                 LG+ E+  ++ ++++M+ G+    YS+++    K+G  
Sbjct: 423 MTQRGIRAELFHYIPLLAALCQLGMMEQAMVLFNEMDMNCGLDAVAYSTMMYGACKSGDI 482

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
                +L++M + G  P++VTY+ LI+ F K  D E A  +L +M   G   +   ++ +
Sbjct: 483 KAAKQLLQDMLDEGLAPDAVTYSILINMFAKLGDLEEAERVLKQMAASGFVPDVAVFDSL 542

Query: 335 LGGLCKDGK 343
           + G   +G+
Sbjct: 543 IKGYSAEGQ 551



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 73/135 (54%), Gaps = 3/135 (2%)

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYN 156
           ++E+A+ +F+EM   N  +    ++T++      G +   K+L Q ++++ ++PDA +Y+
Sbjct: 447 MMEQAMVLFNEMD-MNCGLDAVAYSTMMYGACKSGDIKAAKQLLQDMLDEGLAPDAVTYS 505

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           ILI+       LE+A +V  +M      P +  F +LI G   E ++++ L L  + MR 
Sbjct: 506 ILINMFAKLGDLEEAERVLKQMAASGFVPDVAVFDSLIKGYSAEGQINKILDLIHE-MRA 564

Query: 217 YNVKPDGQVFASLIK 231
            NV  D +   +L++
Sbjct: 565 KNVAIDPKFICTLVR 579



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 2/220 (0%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ Y+ +I    R    +    ++ +L   + + P    +  +I  + +   ++RA   
Sbjct: 361 NLVTYNYLIGGFLRVHKVNMAMNLMSELI-SSGLEPDSFTYSILINGFSKLWEVDRAEMF 419

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
              M+   ++  +  +  LL      G +++   LF  M+     DA +Y+ +++G   S
Sbjct: 420 LRTMTQRGIRAELFHYIPLLAALCQLGMMEQAMVLFNEMDMNCGLDAVAYSTMMYGACKS 479

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             ++ A ++  +M+   L P  VT+  LI        ++EA ++ +  M      PD  V
Sbjct: 480 GDIKAAKQLLQDMLDEGLAPDAVTYSILINMFAKLGDLEEAERVLKQ-MAASGFVPDVAV 538

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           F SLIKG  A G+++  L +  EM    + +D     +L+
Sbjct: 539 FDSLIKGYSAEGQINKILDLIHEMRAKNVAIDPKFICTLV 578



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/278 (19%), Positives = 116/278 (41%), Gaps = 37/278 (13%)

Query: 46  NLLHYDLIITKL-GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +++ Y+ +I  L G  +M   M  +   ++ DT + P  + F +VI    +   + +A+ 
Sbjct: 289 DVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQAIS 348

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIHGCV 163
           + + M+       +  +N L+   L   K++  M  + +++   + PD+ +Y+ILI+G  
Sbjct: 349 VREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGLEPDSFTYSILINGFS 408

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTL----------------------------------VT 189
               ++ A      M +R ++  L                                  V 
Sbjct: 409 KLWEVDRAEMFLRTMTQRGIRAELFHYIPLLAALCQLGMMEQAMVLFNEMDMNCGLDAVA 468

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           + T++YG C    +  A +L +D++    + PD   ++ LI     +G+L  A  V ++M
Sbjct: 469 YSTMMYGACKSGDIKAAKQLLQDMLD-EGLAPDAVTYSILINMFAKLGDLEEAERVLKQM 527

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
                  D  ++ SLI      G+ N+   ++ EM+ +
Sbjct: 528 AASGFVPDVAVFDSLIKGYSAEGQINKILDLIHEMRAK 565


>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
 gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
 gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
 gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
          Length = 918

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 150/312 (48%), Gaps = 21/312 (6%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGR--------AKMFDEMQQILHQLKHDTRIVPKEI 84
           N  + + L+P   NL+ Y+ +I   G+        AK FDEMQ+          + P  I
Sbjct: 292 NSMKEYGLRP---NLVTYNAVIDACGKGGMEFKQVAKFFDEMQR--------NGVQPDRI 340

Query: 85  IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQI 143
            F +++    R  L E A  +FDEM++  ++  V  +NTLL+     G++D   E L Q+
Sbjct: 341 TFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQM 400

Query: 144 MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
             K + P+  SY+ +I G   + R ++A  +F EM    +    V++ TL+       R 
Sbjct: 401 PVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRS 460

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
           +EAL +  ++  V  +K D   + +L+ G    G+      V  EM R+ +  +   YS+
Sbjct: 461 EEALDILREMASV-GIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYST 519

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LI    K G   E   I +E K  G + + V Y+ALI   CK     +A +++DEM  +G
Sbjct: 520 LIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEG 579

Query: 324 CKANPISYNVIL 335
              N ++YN I+
Sbjct: 580 ISPNVVTYNSII 591



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 143/295 (48%), Gaps = 4/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL-LERALQMFDE 108
           +  +I+  GR+ + +E   + + +K +  + P  + +  VI   G+  +  ++  + FDE
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMK-EYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDE 329

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRR 167
           M    VQ     FN+LL      G  +  + LF ++  + +  D  SYN L+       +
Sbjct: 330 MQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQ 389

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           ++ A+++  +M  +R+ P +V++ T+I G     R DEAL L  + MR   +  D   + 
Sbjct: 390 MDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGE-MRYLGIALDRVSYN 448

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +L+     VG    AL +  EM    I+ D   Y++L+    K G+ +E   +  EMK  
Sbjct: 449 TLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKRE 508

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
              PN +TY+ LI G+ K   ++ A  I  E    G +A+ + Y+ ++  LCK+G
Sbjct: 509 HVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNG 563



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 127/258 (49%), Gaps = 6/258 (2%)

Query: 88  NVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY 147
           + +G YG+  + +R   +F+   +     TV  F+ L++     G  +    +F  M++Y
Sbjct: 241 STLGRYGKVTIAKR---IFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEY 297

Query: 148 -VSPDACSYNILIHGCVVS-RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
            + P+  +YN +I  C       +   K FDEM +  +QP  +TF +L+  +C    + E
Sbjct: 298 GLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLL-AVCSRGGLWE 356

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           A +   D M    ++ D   + +L+  +C  G++ LA  +  +M   +I  +   YS++I
Sbjct: 357 AARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVI 416

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
               KAGR +E   +  EM+  G   + V+YN L+S + K    E A  IL EM   G K
Sbjct: 417 DGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIK 476

Query: 326 ANPISYNVILGGLCKDGK 343
            + ++YN +LGG  K GK
Sbjct: 477 KDVVTYNALLGGYGKQGK 494


>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 418

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 127/228 (55%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++  +  G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E ++++A +L E+++    + P+G  F +LI G C 
Sbjct: 195 NAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLD-NGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 254 NGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E A      M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGR 361



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 136/283 (48%), Gaps = 44/283 (15%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ + ++ +V  FNTL+N  +  G LD 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMV---------------- 179
              L   M+   V PD  +Y++LI+G     ++EDA ++F+EM+                
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLID 249

Query: 180 -------------------KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                               + L P L+T+ TLIYGLC +  + +A  L ++ M +  +K
Sbjct: 250 GHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDE-MSMKGLK 308

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   + +LI G C  G+L  A   ++ M+++ I +D   Y++LIS L + GR  +   +
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           L+EM   G KP   TY  +I+ FCK+ D      +L EM   G
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 103/198 (52%), Gaps = 2/198 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           +E A ++F+EM    +      F TL++     G++    E++ Q++ + +SPD  +YN 
Sbjct: 222 MEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNT 281

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G      L+ A  + DEM  + L+P  +T+ TLI G C E  ++ A   ++ +++  
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXYRKRMIKE- 340

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N++ D   + +LI GLC  G    A  +  EM+   ++ + G Y+ +I+   K G     
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400

Query: 278 PAILKEMKERGCKPNSVT 295
             +LKEM+  G  P+ VT
Sbjct: 401 SKLLKEMQRDGYVPSVVT 418



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 51/103 (49%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE +          ++ L+ +  K G      ++   + + G +P+ V++N L+
Sbjct: 119 LVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ K  D +  F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 155/334 (46%), Gaps = 38/334 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y+ ++  L +A+  D+ +  L Q+  + R++P    + N+I  Y      + A+++
Sbjct: 256 DLVTYNSVVHALCKARAMDKAEAFLRQMV-NKRVLPNNWTYNNLIYGYSSTGQWKEAVRV 314

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHG--- 161
           F EM   ++   V   + L+      GK+   +++F  M  K  +PD  SYNI+++G   
Sbjct: 315 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYAT 374

Query: 162 --CVVSRR------------------------------LEDAWKVFDEMVKRRLQPTLVT 189
             C+V                                 L+ A  +F+EM    ++P +VT
Sbjct: 375 KGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT 434

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           + T+I  LC   ++D+A++ K + M    V PD   +  LI+G C  G L  A  +  E+
Sbjct: 435 YRTVIAALCRIGKMDDAME-KFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEI 493

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           + + + +D   +SS+I+ L K GR  +   I       G  P++V YN L+ G+C     
Sbjct: 494 MNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKM 553

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           E A  + D M   G + N + Y  ++ G CK G+
Sbjct: 554 EKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGR 587



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 154/312 (49%), Gaps = 8/312 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF-CNVIG 91
           N+   H +KP   +++ Y  +I  L R    D+  +  +Q+  D  + P +  + C + G
Sbjct: 421 NEMRDHGVKP---DVVTYRTVIAALCRIGKMDDAMEKFNQMI-DQGVAPDKYAYNCLIQG 476

Query: 92  FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSP 150
           F     LL +A ++  E+ +  + + + FF++++N     G++   + +F +     + P
Sbjct: 477 FCTHGSLL-KAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHP 535

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           DA  YN+L+ G  +  ++E A +VFD MV   ++P +V +GTL+ G C   R+DE L L 
Sbjct: 536 DAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLF 595

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
            ++++   +KP   +++ +I GL   G    A     EM    I MD   Y+ ++  LFK
Sbjct: 596 REMLQ-RGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFK 654

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
               +E   + KE++    K N +T N +I G  +    E A  +   +       + ++
Sbjct: 655 NRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVT 714

Query: 331 YNVILGGLCKDG 342
           Y++++  L K+G
Sbjct: 715 YSIMITNLIKEG 726



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 142/292 (48%), Gaps = 7/292 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++++I       M D+   I ++++ D  + P  + +  VI    R   ++ A++ F++M
Sbjct: 400 FNVLIKAYANCGMLDKAMIIFNEMR-DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQM 458

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
               V      +N L+    T G L + KEL  +IM   +  D   ++ +I+      R+
Sbjct: 459 IDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRV 518

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            DA  +FD  V   L P  V +  L+ G CL  ++++AL++  D M    ++P+   + +
Sbjct: 519 MDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVF-DAMVSAGIEPNVVGYGT 577

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK--EMKE 286
           L+ G C +G +   L +  EM++  I+    +YS +I  LF+AGR    PA +K  EM E
Sbjct: 578 LVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRT--VPAKMKFHEMTE 635

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            G   +  TYN ++ G  K   F+ A  +  E+     K N I+ N ++ G+
Sbjct: 636 SGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGM 687



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 139/308 (45%), Gaps = 14/308 (4%)

Query: 46  NLLHYDLI--------ITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           N +H D++        + KLGR     + Q I   L  +  + P  +++  ++  Y    
Sbjct: 496 NGMHLDIVFFSSIINNLCKLGRVM---DAQNIF-DLTVNVGLHPDAVVYNMLMDGYCLVG 551

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYN 156
            +E+AL++FD M S  ++  V  + TL+N     G++D    LF +++++ + P    Y+
Sbjct: 552 KMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 611

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           I+I G   + R   A   F EM +  +   + T+  ++ GL      DEA+ L ++ +R 
Sbjct: 612 IIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKE-LRA 670

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
            NVK +     ++I G+     +  A  +   + R ++      YS +I+ L K G   E
Sbjct: 671 MNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEE 730

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +   M+  GC+PNS   N ++    K+ +   A   L ++ ++      ++  +++ 
Sbjct: 731 AEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVD 790

Query: 337 GLCKDGKC 344
                G C
Sbjct: 791 LFSSKGTC 798



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 10/204 (4%)

Query: 146 KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
           + +SP + +Y IL+  C  + R E A   F ++++  L+  ++    L+ G C   R DE
Sbjct: 108 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDE 167

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA------G 259
           AL +           PD   ++ L+K LC  G+     G  ++++R   E  A       
Sbjct: 168 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGK----SGQADDLLRMMAEGGAVCSPNVV 223

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+++I   FK G  N+   + KEM +RG  P+ VTYN+++   CK    + A   L +M
Sbjct: 224 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQM 283

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
            +K    N  +YN ++ G    G+
Sbjct: 284 VNKRVLPNNWTYNNLIYGYSSTGQ 307



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 107/253 (42%), Gaps = 7/253 (2%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE--LFQIMEKYVSPDA 152
           RA   E AL  F ++    +++ +   N LL       + D   +  L +  E    PD 
Sbjct: 126 RAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDV 185

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVK--RRLQPTLVTFGTLIYGLCLELRVDEALKL- 209
            SY+IL+       +   A  +   M +      P +V + T+I G   E  V++A  L 
Sbjct: 186 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLF 245

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
           KE + R   + PD   + S++  LC    +  A     +MV  ++  +   Y++LI    
Sbjct: 246 KEMVQR--GIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYS 303

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
             G+  E   + KEM+     P+ VT + L+   CK    + A  + D M  KG   +  
Sbjct: 304 STGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 363

Query: 330 SYNVILGGLCKDG 342
           SYN++L G    G
Sbjct: 364 SYNIMLNGYATKG 376


>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 165/341 (48%), Gaps = 14/341 (4%)

Query: 1   KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRA 60
           K + ++ L  L RL     LAL  FK          A   K F YN   Y+ +I  LG+ 
Sbjct: 110 KVSPALVLEVLKRLSNAGALALSFFK---------WAEKQKGFMYNTESYNALIDSLGKI 160

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           K F+ +  +++ +K    ++ KE  F  +   Y R+  ++ A+  F++M  F +++    
Sbjct: 161 KQFNMIWNLVNDMKRKG-VLTKE-TFALISRRYARSGKVKEAMNTFEKMEKFGLKIESTD 218

Query: 121 FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           FN LL+  +   ++   + +F  M+ +   PD  SY IL+ G    + L    +V+ EM 
Sbjct: 219 FNRLLDTLIKSRQVLSAQNVFDKMKIRRFVPDIKSYTILLEGWGQEKNLLKLDEVYREMK 278

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
               +P +VT+G LI   C   + D+A++L  + M   N +P   +F +LI GL +V  L
Sbjct: 279 DEGFEPDVVTYGILINAYCKVRKYDDAIELFRE-MESKNCQPSPHIFCTLINGLGSVRRL 337

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
           S AL             +   Y++++ A   + R ++   ++ EM++ G  PNS TY+ +
Sbjct: 338 SEALEFFRRSKASGFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMRKSGVGPNSRTYDII 397

Query: 300 ISGFCKEEDFEAAFTILDEM-GDKGCKANPISYNVILGGLC 339
           +    K E    AF++ ++M  ++ C+    +Y++I+   C
Sbjct: 398 LHHLIKAEKTTEAFSVFEKMSSEEECEPTVSTYDIIVRMFC 438



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 114/235 (48%), Gaps = 4/235 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  +++ Y ++I    + + +D+  ++  +++      P   IFC +I   G  R L  A
Sbjct: 282 FEPDVVTYGILINAYCKVRKYDDAIELFREME-SKNCQPSPHIFCTLINGLGSVRRLSEA 340

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
           L+ F    +         +N ++       ++D    +   M K  V P++ +Y+I++H 
Sbjct: 341 LEFFRRSKASGFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMRKSGVGPNSRTYDIILHH 400

Query: 162 CVVSRRLEDAWKVFDEMV-KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
            + + +  +A+ VF++M  +   +PT+ T+  ++   C   +V+ A+K+  D M+   V 
Sbjct: 401 LIKAEKTTEAFSVFEKMSSEEECEPTVSTYDIIVRMFCNMDKVESAIKV-WDRMKAKGVH 459

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
           P   +F+ LI  LC   +L +A    +EM+   I   A ++S L  AL + GRK+
Sbjct: 460 PGMHMFSILINSLCHENKLDIACKYFQEMLDVGIRPPAALFSHLKQALIEDGRKD 514


>gi|125537408|gb|EAY83896.1| hypothetical protein OsI_39118 [Oryza sativa Indica Group]
          Length = 693

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 127/259 (49%), Gaps = 1/259 (0%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145
           F  ++  Y RA  L  A+++   M        +   N  +N  +  G++D+  E  + M 
Sbjct: 132 FAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMR 191

Query: 146 KY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
           +  V PD  +YN LI G   +RR+ DA ++   M++    P  +++ T++  LC E RV+
Sbjct: 192 RVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVE 251

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           E   L + +     + PD   +  LI GL   G    AL    E    +  +D   YS++
Sbjct: 252 EVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAI 311

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           + +    GR  E   I+ EM  +GC+P+ VTY+ ++ GFC+  + + A  ++  M    C
Sbjct: 312 VHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDC 371

Query: 325 KANPISYNVILGGLCKDGK 343
           K N +++  +L GLCK GK
Sbjct: 372 KPNTVTHTALLNGLCKVGK 390



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 112/213 (52%), Gaps = 3/213 (1%)

Query: 133 KLDRMKELFQIMEKYVS--PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           +++ ++ L Q M       PD  +YN+LIHG       ++A +   E   +R +   V +
Sbjct: 249 RVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGY 308

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
             +++  CL  R+ EA ++  +++     +PD   +++++ G C +GEL  A  + + M 
Sbjct: 309 SAIVHSFCLNGRMAEAKEIVGEMIS-KGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMY 367

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
           ++  + +   +++L++ L K G+ +E   +L + +E    P+ +TY+ ++ GF +E   +
Sbjct: 368 KNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLK 427

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +  ++ +M  KG     +  N+++  LCKDGK
Sbjct: 428 ESCDVVVQMLQKGFFPTTVEINLLIHALCKDGK 460



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 139/310 (44%), Gaps = 17/310 (5%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K FR + + Y  I+          E ++I+ ++       P  + +  V+  + R   L+
Sbjct: 299 KRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKG-CQPDVVTYSTVVDGFCRIGELD 357

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
           +A +M   M   + +        LLN     GK     EL  +  E++ +P   +Y++++
Sbjct: 358 QARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVM 417

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED------I 213
           HG     +L+++  V  +M+++   PT V    LI+ LC + +  EA    E        
Sbjct: 418 HGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDGKPAEAKDFMEQCQSKGCT 477

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           + V N       F ++I G    G+L  AL + ++M       D   Y+ ++ AL K GR
Sbjct: 478 INVVN-------FTTVIHGFSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALGKKGR 530

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   ++++M  RG  P  VTY  +I  +C++ + E    +L++M  +  +    +YN 
Sbjct: 531 LKEATGLVEKMLNRGLLPTPVTYRTVIHRYCEKGNLEDLLNLLEKMLAR--QEMKSAYNQ 588

Query: 334 ILGGLCKDGK 343
           ++  LC  GK
Sbjct: 589 VVEKLCAFGK 598


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 148/285 (51%), Gaps = 8/285 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLL 99
           K  R N++ Y  ++  L  +  + +  ++L  +    +I P  I +  ++  F    ++L
Sbjct: 219 KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK-KKITPNVITYSALLDAFVKNGKVL 277

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           E A ++F+EM   ++   +  +++L+N      ++D   ++F +M  K    D  SYN L
Sbjct: 278 E-AKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTL 336

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G   ++R+ED  K+F EM +R L    VT+ TLI G      VD+A +     M  + 
Sbjct: 337 INGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQ-MDFFG 395

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   +  L+ GLC  GEL  AL + E+M + ++++D   Y+++I  + K G+  E  
Sbjct: 396 ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAW 455

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKE---EDFEAAFTILDEMG 320
           ++   +  +G KP+ VTY  ++SG C +    + EA +T + + G
Sbjct: 456 SLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 138/264 (52%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +   +++  + R   +  A+ + D+M     +  +  +N +++      +++   + 
Sbjct: 153 PDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDF 212

Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ +E K + P+  +Y  L++G   S R  DA ++  +M+K+++ P ++T+  L+     
Sbjct: 213 FKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVK 272

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             +V EA +L E+++R+ ++ PD   ++SLI GLC    +  A  + + MV      D  
Sbjct: 273 NGKVLEAKELFEEMVRM-SIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVV 331

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI+   KA R  +   + +EM +RG   N+VTYN LI GF +  D + A     +M
Sbjct: 332 SYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 391

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
              G   +  +YN++LGGLC +G+
Sbjct: 392 DFFGISPDIWTYNILLGGLCDNGE 415



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 131/264 (49%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKE 139
           P  + +  +I    + + +  A   F E+    ++  V  +  L+N      +  D  + 
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 247

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L  +++K ++P+  +Y+ L+   V + ++ +A ++F+EMV+  + P +VT+ +LI GLCL
Sbjct: 248 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCL 307

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R+DEA ++  D+M       D   + +LI G C    +   + +  EM +  +  +  
Sbjct: 308 HDRIDEANQM-FDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTV 366

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI   F+AG  ++      +M   G  P+  TYN L+ G C   + E A  I ++M
Sbjct: 367 TYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM 426

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             +    + ++Y  ++ G+CK GK
Sbjct: 427 QKREMDLDIVTYTTVIRGMCKTGK 450



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 142/287 (49%), Gaps = 4/287 (1%)

Query: 55  TKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNV 114
           T+L   K+ D +      +K  +R  P  + F  ++    + +  +  + +  +M    +
Sbjct: 59  TRLRDIKLNDAIDLFSDMVK--SRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGI 116

Query: 115 QMTVKFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWK 173
           +  +  FN ++N    C ++   +  L ++++    PD  +   L++G     R+ DA  
Sbjct: 117 RNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVS 176

Query: 174 VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGL 233
           + D+MV+   +P +V +  +I  LC   RV++A    ++I R   ++P+   + +L+ GL
Sbjct: 177 LVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIER-KGIRPNVVTYTALVNGL 235

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           C     S A  +  +M++ KI  +   YS+L+ A  K G+  E   + +EM      P+ 
Sbjct: 236 CNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDI 295

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           VTY++LI+G C  +  + A  + D M  KGC A+ +SYN ++ G CK
Sbjct: 296 VTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCK 342



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 2/212 (0%)

Query: 133 KLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           KL+   +LF  M K    P    +N L+   V  ++ +    +  +M    ++  L TF 
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
            +I   C   +V  AL +   ++++   +PD     SL+ G C    +S A+ + ++MV 
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKL-GYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE 183

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
              + D   Y+++I +L K  R N+     KE++ +G +PN VTY AL++G C    +  
Sbjct: 184 IGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSD 243

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           A  +L +M  K    N I+Y+ +L    K+GK
Sbjct: 244 AARLLSDMIKKKITPNVITYSALLDAFVKNGK 275


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 139/265 (52%), Gaps = 2/265 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I+P    +   I  + +AR  + A ++F+EM   +  M    +N +++     G ++   
Sbjct: 239 ILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAF 298

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
              + M  Y +SPDA +Y  L++G     RL++A  + DEM    L+P +V +GTL+ G 
Sbjct: 299 GFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGF 358

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
             E +  EA  + ++++    V+P+  ++ +LI+GLC +G+L  A  + +EM++  +  D
Sbjct: 359 MKEGKTAEAFDILKEMISA-GVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPD 417

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+ L+   F+   K+    +L EM+  G  PN  +Y  +I+G C+  + + A  +L+
Sbjct: 418 TFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLE 477

Query: 318 EMGDKGCKANPISYNVILGGLCKDG 342
           EM  +G K N   Y  ++ G  K+G
Sbjct: 478 EMISEGLKPNAFMYAPLIIGHSKEG 502



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 132/250 (52%), Gaps = 2/250 (0%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDAC 153
           RA  +E   ++   M    +   V  ++T +         D  K++F+ M +   + +  
Sbjct: 220 RADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEV 279

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN++I G   S  +E+A+   +EMV   L P   T+G L+ GLC   R+ EA  L ++ 
Sbjct: 280 TYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDE- 338

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M    +KP+  V+ +L+ G    G+ + A  + +EM+   ++ +  +Y +LI  L K G+
Sbjct: 339 MSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQ 398

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
                 +LKEM + G +P++ TYN L+ G  ++ D + AF +L+EM + G   N  SY +
Sbjct: 399 LGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGI 458

Query: 334 ILGGLCKDGK 343
           ++ GLC++G+
Sbjct: 459 MINGLCQNGE 468



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 148/298 (49%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y ++I  L +     E   +L ++  +  + P   ++  +I  + +   +  A + 
Sbjct: 452 NVYSYGIMINGLCQNGESKEAGNLLEEMISEG-LKPNAFMYAPLIIGHSKEGNISLACEA 510

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            ++M+  NV   +  +N+L+    T G+++  +E + Q+ ++ + PD  +Y+ LIHG   
Sbjct: 511 LEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCK 570

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  LE A ++  +M+   L+P   T+  L+ G       ++   + + ++   + KPD  
Sbjct: 571 TGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGD-KPDNH 629

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++  +I+ L     + +A  V  E+ ++ +  D  IYSSLIS L K     +   +L EM
Sbjct: 630 IYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEM 689

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            + G +P  V YNALI GFC+  D   A  + D +  KG   N ++Y  ++ G CK+G
Sbjct: 690 AKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNG 747



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 142/299 (47%), Gaps = 4/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L  Y+ +I  L      +E ++   Q++    +VP E  +  +I  Y +   LE+A Q+
Sbjct: 522 DLFCYNSLIKGLSTVGRMEEAEEYYAQVQK-RGLVPDEFTYSGLIHGYCKTGNLEKADQL 580

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
             +M +  ++     +  LL         +++  + Q M      PD   Y I+I     
Sbjct: 581 LRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSR 640

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S  +E A+ V  E+ K  L P L  + +LI GLC    +++A+ L +++ +   ++P   
Sbjct: 641 SENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAK-EGLEPGIV 699

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G C  G++S A  V + ++   +  +   Y++LI    K G   +   + KEM
Sbjct: 700 CYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEM 759

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +RG  P++  YN L +G     D E A  + +EM ++G  AN   +N ++ G CK GK
Sbjct: 760 LDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRG-YANVSLFNTLVHGFCKRGK 817



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 130/309 (42%), Gaps = 39/309 (12%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRI-VPKEIIFCNVIGFYGR 95
           A  L P    LLH  +I+       +   +Q+ +    H +R   P   +   ++  Y +
Sbjct: 127 AASLFPQANGLLH-QMILAHPHPPLVLASIQRAIQDTDHRSRSPSPSTAVLDVLVDTYKK 185

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACS 154
              +  A Q+   M+   +  T +  N LL   L    ++ + +L   ME   + PD  +
Sbjct: 186 TGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWKLKGFMEGAGILPDVYT 245

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           Y+  I     +R  + A KVF+EM +R      VT                         
Sbjct: 246 YSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVT------------------------- 280

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
             YNV         +I GLC  G +  A G KEEMV   +  DA  Y +L++ L K  R 
Sbjct: 281 --YNV---------MISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRL 329

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            E  A+L EM   G KPN V Y  L+ GF KE     AF IL EM   G + N I Y+ +
Sbjct: 330 KEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNL 389

Query: 335 LGGLCKDGK 343
           + GLCK G+
Sbjct: 390 IRGLCKIGQ 398



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 145/334 (43%), Gaps = 44/334 (13%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y+++I+ L R+   +E      ++  D  + P    +  ++    +   L+ A  +
Sbjct: 277 NEVTYNVMISGLCRSGAVEEAFGFKEEMV-DYGLSPDAFTYGALMNGLCKGSRLKEAKAL 335

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHG 161
            DEMS   ++  +  + TL++  +  GK     E F I+++ +S    P+   Y+ LI G
Sbjct: 336 LDEMSCSGLKPNIVVYGTLVDGFMKEGK---TAEAFDILKEMISAGVQPNKIMYDNLIRG 392

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                +L  A K+  EM+K  L+P   T+  L+ G   +   D A +L  + MR   + P
Sbjct: 393 LCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNE-MRNSGILP 451

Query: 222 DGQVFASLIKGLCAVGE-----------------------------------LSLALGVK 246
           +   +  +I GLC  GE                                   +SLA    
Sbjct: 452 NVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEAL 511

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           E+M +  +  D   Y+SLI  L   GR  E      ++++RG  P+  TY+ LI G+CK 
Sbjct: 512 EKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKT 571

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            + E A  +L +M + G K N  +Y  +L G  K
Sbjct: 572 GNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFK 605



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 119/241 (49%), Gaps = 8/241 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I  L R++  +    +L +++ +  +VP   I+ ++I    +   +E+A+ + DEM
Sbjct: 631 YGIVIRNLSRSENMEVAFMVLTEVEKNG-LVPDLHIYSSLISGLCKIADMEKAVGLLDEM 689

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
           +   ++  +  +N L++     G + R + +F  I+ K + P+  +Y  LI G   +  +
Sbjct: 690 AKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDI 749

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM-RVY-NVKPDGQVF 226
            DA+ ++ EM+ R + P    +  L  G      +++AL L E++  R Y NV     +F
Sbjct: 750 TDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYANV----SLF 805

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
            +L+ G C  G+L     +   M+  +I  +A     ++S   KAG+  E   +  E+++
Sbjct: 806 NTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQQ 865

Query: 287 R 287
           +
Sbjct: 866 K 866


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 180/379 (47%), Gaps = 53/379 (13%)

Query: 7   RLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEM 66
            +A + + QKDP  AL +F +               F++  L Y  +I KLG    FD M
Sbjct: 9   HVAAVLKYQKDPLKALSIFNSVKKEDG---------FKHTFLTYKRMIEKLGFHGEFDAM 59

Query: 67  QQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126
           +++L +++ +      E ++ + +  YGR   ++ A+ +F+ M  +N + ++  +N ++N
Sbjct: 60  ERVLMEMRLNVDNSLLEGVYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMN 119

Query: 127 PKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI---------------------HGC-- 162
             +  G  ++  +++ ++  + ++PD C++ I I                      GC  
Sbjct: 120 ILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCEL 179

Query: 163 -------VVSRRLE-----DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
                  V+S   E     +A+++F++M++  + P + TF  L++ LC +  + E  KL 
Sbjct: 180 NAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLL 239

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG--VKEE-----MVRDKIEMDAGIYSS 263
             +++   V P+   F   I+GLC  G L  A    V+ E     MV   +E D   Y++
Sbjct: 240 NKVLK-NGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNT 298

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +I    K G+  +   ILK+ K +G  P+  TY +LI G C++ D + A  + +E   KG
Sbjct: 299 IIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKG 358

Query: 324 CKANPISYNVILGGLCKDG 342
            K + + YN ++ GL + G
Sbjct: 359 LKPSIVLYNTLIKGLSQQG 377



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 151/336 (44%), Gaps = 51/336 (15%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ II    +     +  +IL   K     VP E  +C++I    +   ++ AL +F+E 
Sbjct: 296 YNTIIYGYSKVGKIQDASRILKDAKFKG-FVPDEFTYCSLIIGVCQDGDIDHALALFEEA 354

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
               ++ ++  +NTL+      G + +  +L   M K  +SPD  +YN++I+G      +
Sbjct: 355 LGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCV 414

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            DA  + +  + +   P + TF TLI G C  L++D A+ +  D M  + V PD   + S
Sbjct: 415 SDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGIL-DSMWSHGVTPDVITYNS 473

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAG------IYSSLISALFKAGRKNEFPAILK 282
           ++ GLC       A   ++ M   K+ M+ G       Y+ LI +L KA +  E   +L+
Sbjct: 474 ILNGLCK------AAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLE 527

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL-------------------------- 316
           E++ RG  P+ V++  +ISGFC   D + A+ +                           
Sbjct: 528 EIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEK 587

Query: 317 ----------DEMGDKGCKANPISYNVILGGLCKDG 342
                      EMGDKGC  +  +Y V++ G CK G
Sbjct: 588 LDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVG 623



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 108/204 (52%), Gaps = 1/204 (0%)

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L +++ K + PD  +YN +I+G     +++DA ++  +   +   P   T+ +LI G+C 
Sbjct: 281 LHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQ 340

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  +D AL L E+ +    +KP   ++ +LIKGL   G +  AL +  +M ++ +  D  
Sbjct: 341 DGDIDHALALFEEALG-KGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIW 399

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+ +I+ L K G  ++   +L     +G  P+  T+N LI G+CK    + A  ILD M
Sbjct: 400 TYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSM 459

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
              G   + I+YN IL GLCK  K
Sbjct: 460 WSHGVTPDVITYNSILNGLCKAAK 483



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 145/307 (47%), Gaps = 14/307 (4%)

Query: 46  NLLHYDLIITKLGRAKMFD-------EMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           NL  +++ I  L R  + +       E +  LH++  +  + P +  +  +I  Y +   
Sbjct: 250 NLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMV-NKGLEPDDFTYNTIIYGYSKVGK 308

Query: 99  LERALQMFDEMSSFNVQMTVKF-FNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYN 156
           ++ A ++  + + F   +  +F + +L+      G +D    LF+  + K + P    YN
Sbjct: 309 IQDASRILKD-AKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYN 367

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-KEDIMR 215
            LI G      +  A ++ ++M K  + P + T+  +I GLC    V +A  L    I +
Sbjct: 368 TLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAK 427

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
            Y   PD   F +LI G C   ++  A+G+ + M    +  D   Y+S+++ L KA +  
Sbjct: 428 GY--LPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPE 485

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +     K + E+GC PN +TYN LI   CK      A  +L+E+ ++G   +P+S+  ++
Sbjct: 486 DVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVI 545

Query: 336 GGLCKDG 342
            G C +G
Sbjct: 546 SGFCNNG 552



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 109/224 (48%), Gaps = 2/224 (0%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +NT++      GK+     + +  + K   PD  +Y  LI G      ++ A  +F+E +
Sbjct: 296 YNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEAL 355

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
            + L+P++V + TLI GL  +  V +AL+L  D M    + PD   +  +I GLC +G +
Sbjct: 356 GKGLKPSIVLYNTLIKGLSQQGLVLKALQLMND-MSKEGMSPDIWTYNLVINGLCKMGCV 414

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
           S A  +    +      D   +++LI    K  + +    IL  M   G  P+ +TYN++
Sbjct: 415 SDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSI 474

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           ++G CK    E        + +KGC  N I+YN+++  LCK  K
Sbjct: 475 LNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARK 518



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 110/221 (49%), Gaps = 3/221 (1%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           FNTL++      K+D    +   M  + V+PD  +YN +++G   + + ED  + F  ++
Sbjct: 436 FNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIM 495

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           ++   P ++T+  LI  LC   +V EAL L E+I R   + PD   F ++I G C  G+L
Sbjct: 496 EKGCLPNIITYNILIESLCKARKVTEALDLLEEI-RNRGLIPDPVSFGTVISGFCNNGDL 554

Query: 240 SLALGVKEEMVRD-KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
             A  +   M +  +I      Y+ +I+A  +    +    +  EM ++GC P+S TY  
Sbjct: 555 DEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRV 614

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +I GFCK  +  + +  L +  + G   +  ++  ++  LC
Sbjct: 615 MIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLC 655



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 91/182 (50%), Gaps = 4/182 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+++I  L +A+   E   +L +++ +  ++P  + F  VI  +     L+ A Q+
Sbjct: 502 NIITYNILIESLCKARKVTEALDLLEEIR-NRGLIPDPVSFGTVISGFCNNGDLDEAYQL 560

Query: 106 FDEM-SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
           F  M   + +  TV  +N ++N       +D  ++LF  M +K   PD+ +Y ++I G  
Sbjct: 561 FRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFC 620

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
               +   +    + ++    P+L TFG +I  LC++ RV EA+ +   ++R   V P+ 
Sbjct: 621 KVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRT-GVVPEA 679

Query: 224 QV 225
            V
Sbjct: 680 VV 681


>gi|297832386|ref|XP_002884075.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329915|gb|EFH60334.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 462

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 119/211 (56%), Gaps = 3/211 (1%)

Query: 132 GKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR-RLQPTLVT 189
           G++D  K+L  ++ EK+  PD  +YN L+      + L   ++  DEM     ++P LV+
Sbjct: 172 GRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVS 231

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           F  LI  +C    + EA+ L   +      KPD  ++ +++KG C + + S A+GV ++M
Sbjct: 232 FTILIDNVCNSKNLREAMYLVSKLGNA-GFKPDCFLYNTIMKGFCTLSKGSEAIGVYKKM 290

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
             + +E D   Y++LI  L K+GR  E    LK M + G +P++ TY +L++G C++ + 
Sbjct: 291 KEEGVEPDQITYNTLIYGLSKSGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGES 350

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             A ++L+EM  +GC  N  +YN +L GLCK
Sbjct: 351 LGALSLLEEMEARGCAPNDCTYNTLLHGLCK 381



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 113/244 (46%), Gaps = 8/244 (3%)

Query: 35  TEAH-PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           TE H P   + YN L     +  L + K    + + + +++ D  + P  + F  +I   
Sbjct: 185 TEKHSPPDTYTYNFL-----LKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNV 239

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDA 152
             ++ L  A+ +  ++ +   +     +NT++    T  K      +++ M E+ V PD 
Sbjct: 240 CNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAIGVYKKMKEEGVEPDQ 299

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN LI+G   S R+E+A      MV    +P   T+ +L+ G+C +     AL L E+
Sbjct: 300 ITYNTLIYGLSKSGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEE 359

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M      P+   + +L+ GLC    +   + + E M    ++++   Y++L+ +L K+G
Sbjct: 360 -MEARGCAPNDCTYNTLLHGLCKARLMDKGMELYELMKSSGVKLETNGYATLVRSLVKSG 418

Query: 273 RKNE 276
           +  E
Sbjct: 419 KVAE 422



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 85/180 (47%), Gaps = 5/180 (2%)

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTF-GTLIYGLCLELRVDEALKLKEDIMRVY-NVKPD 222
           S  L DA  +F+ +      P  + F  +++        VD+ +KL + I++   N +P 
Sbjct: 61  SPNLSDAKSLFNSIAATSRIPLDLKFHNSVLQSYASIAAVDDTVKLFQHILKSQPNFRPG 120

Query: 223 GQVFASLIKGLCAVGELSLA--LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
              F  L+   C   + S++    V   MV + +E D       + +L + GR +E   +
Sbjct: 121 RSTFLILLSHACRAPDSSISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDL 180

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK-GCKANPISYNVILGGLC 339
           +KE+ E+   P++ TYN L+   CK +D    +  +DEM D    K + +S+ +++  +C
Sbjct: 181 MKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVC 240


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 150/297 (50%), Gaps = 3/297 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y++++          +M  +   +  D  I P    F  +I  Y    +L++A+ +
Sbjct: 358 DVFSYNIMLNGYATKGCLVDMTDLFDLMLGDG-IAPDFYTFNVLIKAYANCGMLDKAMII 416

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           F+EM    V+  V  + T++      GK+D   E F Q++++ V+PD  +YN LI G   
Sbjct: 417 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCT 476

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L  A ++  E++   +   +V F ++I  LC   RV +A  + +  + V  + PD  
Sbjct: 477 HGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNV-GLHPDAV 535

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           V++ L+ G C VG++  AL V + MV   IE +  +Y +L++   K GR +E  ++ +EM
Sbjct: 536 VYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREM 595

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            +RG KP+++ Y+ +I G  +      A     EM + G   +  +YN++L GL K+
Sbjct: 596 LQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKN 652



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 155/334 (46%), Gaps = 38/334 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y+ ++  L +A+  D+ +  L Q+  + R++P    + N+I  Y      + A+++
Sbjct: 253 DLVTYNSVVHALCKARAMDKAEAFLRQMV-NKRVLPNNWTYNNLIYGYSSTGQWKEAVRV 311

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHG--- 161
           F EM   ++   V   + L+      GK+   +++F  M  K  +PD  SYNI+++G   
Sbjct: 312 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYAT 371

Query: 162 --CVVSRR------------------------------LEDAWKVFDEMVKRRLQPTLVT 189
             C+V                                 L+ A  +F+EM    ++P +VT
Sbjct: 372 KGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT 431

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           + T+I  LC   ++D+A++ K + M    V PD   +  LI+G C  G L  A  +  E+
Sbjct: 432 YRTVIAALCRIGKMDDAME-KFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEI 490

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           + + + +D   +SS+I+ L K GR  +   I       G  P++V Y+ L+ G+C     
Sbjct: 491 MNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKM 550

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           E A  + D M   G + N + Y  ++ G CK G+
Sbjct: 551 EKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGR 584



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 153/312 (49%), Gaps = 8/312 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF-CNVIG 91
           N+   H +KP   +++ Y  +I  L R    D+  +  +Q+  D  + P +  + C + G
Sbjct: 418 NEMRDHGVKP---DVVTYRTVIAALCRIGKMDDAMEKFNQMI-DQGVAPDKYAYNCLIQG 473

Query: 92  FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSP 150
           F     LL +A ++  E+ +  + + + FF++++N     G++   + +F +     + P
Sbjct: 474 FCTHGSLL-KAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHP 532

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           DA  Y++L+ G  +  ++E A +VFD MV   ++P +V + TL+ G C   R+DE L L 
Sbjct: 533 DAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLF 592

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
            ++++   +KP   +++ +I GL   G    A     EM    I MD   Y+ ++  LFK
Sbjct: 593 REMLQ-RGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFK 651

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
               +E   + KE++    K N +T N +I G  +    E A  +   +       + ++
Sbjct: 652 NRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVT 711

Query: 331 YNVILGGLCKDG 342
           Y++++  L K+G
Sbjct: 712 YSIMITNLIKEG 723



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 139/290 (47%), Gaps = 3/290 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++++I       M D+   I ++++ D  + P  + +  VI    R   ++ A++ F++M
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMR-DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQM 455

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
               V      +N L+    T G L + KEL  +IM   +  D   ++ +I+      R+
Sbjct: 456 IDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRV 515

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            DA  +FD  V   L P  V +  L+ G CL  ++++AL++  D M    ++P+  V+ +
Sbjct: 516 MDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVF-DAMVSAGIEPNVVVYCT 574

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ G C +G +   L +  EM++  I+    +YS +I  LF+AGR         EM E G
Sbjct: 575 LVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESG 634

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
              +  TYN ++ G  K   F+ A  +  E+     K N I+ N ++ G+
Sbjct: 635 IAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGM 684



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 139/308 (45%), Gaps = 14/308 (4%)

Query: 46  NLLHYDLI--------ITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           N +H D++        + KLGR     + Q I   L  +  + P  +++  ++  Y    
Sbjct: 493 NGMHLDIVFFSSIINNLCKLGRVM---DAQNIF-DLTVNVGLHPDAVVYSMLMDGYCLVG 548

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYN 156
            +E+AL++FD M S  ++  V  + TL+N     G++D    LF +++++ + P    Y+
Sbjct: 549 KMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 608

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           I+I G   + R   A   F EM +  +   + T+  ++ GL      DEA+ L ++ +R 
Sbjct: 609 IIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKE-LRA 667

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
            NVK +     ++I G+     +  A  +   + R ++      YS +I+ L K G   E
Sbjct: 668 MNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEE 727

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +   M+  GC+PNS   N ++    K+ +   A   L ++ ++      ++  +++ 
Sbjct: 728 AEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVD 787

Query: 337 GLCKDGKC 344
                G C
Sbjct: 788 LFSSKGTC 795



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 10/204 (4%)

Query: 146 KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
           + +SP + +Y IL+  C  + R E A   F ++++  L+  ++    L+ G C   R DE
Sbjct: 105 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDE 164

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA------G 259
           AL +           PD   ++ L+K LC  G+     G  ++++R   E  A       
Sbjct: 165 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGK----SGQADDLLRMMAEGGAVCSPNVV 220

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+++I   FK G  N+   + KEM +RG  P+ VTYN+++   CK    + A   L +M
Sbjct: 221 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQM 280

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
            +K    N  +YN ++ G    G+
Sbjct: 281 VNKRVLPNNWTYNNLIYGYSSTGQ 304



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 107/253 (42%), Gaps = 7/253 (2%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE--LFQIMEKYVSPDA 152
           RA   E AL  F ++    +++ +   N LL       + D   +  L +  E    PD 
Sbjct: 123 RAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDV 182

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVK--RRLQPTLVTFGTLIYGLCLELRVDEALKL- 209
            SY+IL+       +   A  +   M +      P +V + T+I G   E  V++A  L 
Sbjct: 183 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLF 242

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
           KE + R   + PD   + S++  LC    +  A     +MV  ++  +   Y++LI    
Sbjct: 243 KEMVQR--GIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYS 300

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
             G+  E   + KEM+     P+ VT + L+   CK    + A  + D M  KG   +  
Sbjct: 301 STGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 360

Query: 330 SYNVILGGLCKDG 342
           SYN++L G    G
Sbjct: 361 SYNIMLNGYATKG 373


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 124/247 (50%), Gaps = 2/247 (0%)

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYN 156
           +L   L++F E     V    + +N L+N     GK+     L   ME K   PD  SY 
Sbjct: 90  MLGMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYT 149

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            +I G      L+   ++  EM  + L+P L T+ ++I  LC   +V E  K+  ++M+ 
Sbjct: 150 TIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMK- 208

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             V PD  ++ +LI G C +G    A  +  EM   +I  D+  +S+LI  L  +G+  E
Sbjct: 209 RGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVE 268

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +  EM ++G +P+ VTY ALI G+CK  + + AF + ++M   G   N ++Y  +  
Sbjct: 269 ADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALAD 328

Query: 337 GLCKDGK 343
           GLCK G+
Sbjct: 329 GLCKSGE 335



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 125/224 (55%), Gaps = 2/224 (0%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           + TL++     G      +LF  ME + + PD+ +++ LI G   S ++ +A K+F+EM+
Sbjct: 218 YTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMI 277

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           K+  +P  VT+  LI G C    + +A  L   ++++  + P+   + +L  GLC  GEL
Sbjct: 278 KKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQI-GLTPNVVTYTALADGLCKSGEL 336

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A  +  EM R  ++++   Y+++++ L KAG   +   +++EMKE G  P+++TY  L
Sbjct: 337 DTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTL 396

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  + K  +   A  +L EM D+G +   +++NV++ GLC  GK
Sbjct: 397 MDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGK 440



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 149/301 (49%), Gaps = 3/301 (0%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LK  + NL  Y  II  L ++    E +++L ++     + P  +I+  +I  + +    
Sbjct: 173 LKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRG-VFPDHVIYTTLIDGFCKLGNT 231

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNIL 158
           + A ++F EM +  +      F+ L+      GK+    +LF ++++K   PD  +Y  L
Sbjct: 232 QAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTAL 291

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G      ++ A+ + ++MV+  L P +VT+  L  GLC    +D A +L  ++ R   
Sbjct: 292 IDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCR-KG 350

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           ++ +   + +++ GLC  G +  A+ + EEM    +  D   Y++L+ A +K G   +  
Sbjct: 351 LQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKAR 410

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +L+EM +RG +P  VT+N L++G C     E    +L  M +KG   N  +YN I+   
Sbjct: 411 ELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQY 470

Query: 339 C 339
           C
Sbjct: 471 C 471



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 141/285 (49%), Gaps = 18/285 (6%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVK 119
           K+F EM+           IVP  I F  +I G  G  +++E A ++F+EM     +    
Sbjct: 236 KLFSEMEA--------REIVPDSIAFSALICGLSGSGKVVE-ADKLFNEMIKKGFEPDEV 286

Query: 120 FFNTLLNPKLTCGKLDRMKELF----QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVF 175
            +  L++      KL  MK+ F    Q+++  ++P+  +Y  L  G   S  L+ A ++ 
Sbjct: 287 TYTALIDGYC---KLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELL 343

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
            EM ++ LQ  + T+ T++ GLC    + +A+KL E+ M+   + PD   + +L+     
Sbjct: 344 HEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEE-MKEAGLHPDTITYTTLMDAYYK 402

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            GE+  A  +  EM+   ++     ++ L++ L  +G+  +   +LK M E+G  PN+ T
Sbjct: 403 TGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAAT 462

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           YN+++  +C   +   +  I   M  +G   +  +YN+++ G CK
Sbjct: 463 YNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCK 507



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 127/267 (47%), Gaps = 2/267 (0%)

Query: 70  LHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL 129
           LH       + P  + +  +     ++  L+ A ++  EM    +Q+ +  +NT++N   
Sbjct: 307 LHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLC 366

Query: 130 TCGK-LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
             G  L  +K + ++ E  + PD  +Y  L+     +  +  A ++  EM+ R LQPT+V
Sbjct: 367 KAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVV 426

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           TF  L+ GLC+  ++++  +L + ++    + P+   + S++K  C    + ++  +   
Sbjct: 427 TFNVLMNGLCMSGKLEDGERLLKWMLE-KGIMPNAATYNSIMKQYCIRNNMRISTEIYRG 485

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M    +  D+  Y+ LI    KA    E   + KEM E+     + +YNALI GF K + 
Sbjct: 486 MCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKK 545

Query: 309 FEAAFTILDEMGDKGCKANPISYNVIL 335
              A  + +EM  +G  A+   YN+ +
Sbjct: 546 LLEARQLFEEMRREGLVASAEIYNLFV 572



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 131/281 (46%), Gaps = 9/281 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +   L ++   D   ++LH++      +        V G      +L+ A+++
Sbjct: 319 NVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQ-AVKL 377

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            +EM    +      + TL++     G++ + +EL  +++++ + P   ++N+L++G  +
Sbjct: 378 MEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCM 437

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR---VYNVKP 221
           S +LED  ++   M+++ + P   T+ +++   C    +   +++  +I R      V P
Sbjct: 438 SGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYC----IRNNMRISTEIYRGMCAQGVVP 493

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   +  LIKG C    +  A  + +EMV  +  + A  Y++LI   FK  +  E   + 
Sbjct: 494 DSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLF 553

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           +EM+  G   ++  YN  +    +E + E    + DE  +K
Sbjct: 554 EEMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDEAIEK 594


>gi|255660900|gb|ACU25619.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 481

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 164/325 (50%), Gaps = 15/325 (4%)

Query: 31  NPNDTEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVP 81
           + + T  H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +  
Sbjct: 20  HSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEW 78

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
            E ++  +I  YG+  +++ +++MF +M    V+ T+K +N L    L  G+    K  F
Sbjct: 79  DEDMWVMMIDSYGKZGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYF 138

Query: 142 -QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
            +++ + + P   ++N++I G  +S ++E A + F++M  R + P +VT+ T I G    
Sbjct: 139 NKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTXINGYYRV 198

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            +++EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  
Sbjct: 199 KKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDXALRLVEEMKGFGIKPNAIT 257

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDE 318
           YS+L+  L  A + +E   ILKEM ++   P  NS+ +  LIS  C   + +AA  +L  
Sbjct: 258 YSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSI-FMRLISSHCXSGNLDAAADVLKA 316

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M           Y V++   CK G+
Sbjct: 317 MXRLSVPTEAGHYGVLIENFCKXGQ 341



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 122/287 (42%), Gaps = 49/287 (17%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + +   I  Y R + +E A + F EM   N++ TV  + TL+   ++  ++D   
Sbjct: 181 ISPDVVTYNTXINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDXAL 240

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT-------LVT- 189
            L + M+ + + P+A +Y+ L+ G   + ++ +A  +  EM+ + L PT       L++ 
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300

Query: 190 ----------------------------FGTLIYGLCLELRVDEALKL------KEDIMR 215
                                       +G LI   C   + D+A+KL      K+ I+R
Sbjct: 301 HCXSGNLDAAADVLKAMXRLSVPTEAGHYGVLIENFCKXGQYDKAVKLLDKLIEKDIILR 360

Query: 216 ---VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
                +++P    +   I+ LC  G+   A  +  ++++  ++ D    ++LI    + G
Sbjct: 361 PQSTLHLEPSA--YNPXIEYLCNNGQAXKAETLVRQLMKLGVQ-DPTALNTLIRGHSQEG 417

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             +    +LK M  R        YN+L+  + K+ +   A   LD M
Sbjct: 418 SPDSAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSM 464


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 153/307 (49%), Gaps = 8/307 (2%)

Query: 39  PLKPFRYNLLHYDLIITKL-GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           P++P  Y    Y+ +I  L GR +  + +  +   L+     VP  + +  ++    +  
Sbjct: 151 PMEPDSYT---YNTLIRGLCGRGRTGNALVVLDDMLRRGC--VPDVVTYTILLEATCKRS 205

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYN 156
             ++A+++ DEM +      +  +N ++N     G++D   E  + +  +   P+  SYN
Sbjct: 206 GYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYN 265

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           I++ G   + R EDA K+  EM ++   P +VTF  LI  LC    V+ A+++ + I + 
Sbjct: 266 IVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPK- 324

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           Y   P+   +  ++   C   ++  A+   E MV      D   Y++L++AL + G  + 
Sbjct: 325 YGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDA 384

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +L ++K++GC P  ++YN +I G  K    + A  +L+EM  KG + + I+Y+ I  
Sbjct: 385 AVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISS 444

Query: 337 GLCKDGK 343
           GLC++ +
Sbjct: 445 GLCREDR 451



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 110/226 (48%), Gaps = 3/226 (1%)

Query: 118 VKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           V  +N ++      G+LD  + L   M   + PD+ +YN LI G     R  +A  V D+
Sbjct: 124 VMAYNAMVAGYCVTGQLDAARRLVADMP--MEPDSYTYNTLIRGLCGRGRTGNALVVLDD 181

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M++R   P +VT+  L+   C      +A+KL ++ MR     PD   +  ++ G+C  G
Sbjct: 182 MLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDE-MRAKGCAPDIITYNVVVNGICQEG 240

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
            +  A+   + +     E +   Y+ ++  L  A R  +   ++ EM ++G  PN VT+N
Sbjct: 241 RVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFN 300

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            LIS  C+    E A  +LD++   GC  N +SYN IL   CK  K
Sbjct: 301 MLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKK 346



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 11/204 (5%)

Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
           R+ E    +E   +P  C+   LI     S R  +A +V         +P ++ +  ++ 
Sbjct: 80  RLVESMSGLEPSAAPGPCA--ALIKKLCASGRTAEARRVLAA-----CEPDVMAYNAMVA 132

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C+  ++D A +L  D+     ++PD   + +LI+GLC  G    AL V ++M+R    
Sbjct: 133 GYCVTGQLDAARRLVADM----PMEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCV 188

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y+ L+ A  K     +   +L EM+ +GC P+ +TYN +++G C+E   + A   
Sbjct: 189 PDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEF 248

Query: 316 LDEMGDKGCKANPISYNVILGGLC 339
           L  +   GC+ N +SYN++L GLC
Sbjct: 249 LKSLPSHGCEPNTVSYNIVLKGLC 272



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 141/299 (47%), Gaps = 5/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +++ Y++++  + +    D+  + L  L  H     P  + +  V+     A   E A +
Sbjct: 225 DIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCE--PNTVSYNIVLKGLCTAERWEDAEK 282

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV 163
           +  EMS       V  FN L++     G ++   E+   + KY  +P++ SYN ++H   
Sbjct: 283 LMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFC 342

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
             ++++ A    + MV R   P +V++ TL+  LC    VD A++L    ++     P  
Sbjct: 343 KQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQ-LKDKGCTPVL 401

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + ++I GL   G+   AL +  EMV   ++ D   YS++ S L +  R  E      +
Sbjct: 402 ISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCK 461

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +++ G +PN+V YNA++ G CK  +   A  +   M   GC  N  +Y +++ GL  +G
Sbjct: 462 VQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEG 520



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 17/202 (8%)

Query: 148 VSPDACSY----NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT--FGTLIYGLCLEL 201
            SP+A  +    N  + G V    LE+A ++ + M    L+P+        LI  LC   
Sbjct: 51  ASPNAVPHRAVSNDRLRGLVRRGDLEEALRLVESMSG--LEPSAAPGPCAALIKKLCASG 108

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
           R  EA ++      +   +PD   + +++ G C  G+L  A  +  +M    +E D+  Y
Sbjct: 109 RTAEARRV------LAACEPDVMAYNAMVAGYCVTGQLDAARRLVADM---PMEPDSYTY 159

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           ++LI  L   GR      +L +M  RGC P+ VTY  L+   CK   ++ A  +LDEM  
Sbjct: 160 NTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRA 219

Query: 322 KGCKANPISYNVILGGLCKDGK 343
           KGC  + I+YNV++ G+C++G+
Sbjct: 220 KGCAPDIITYNVVVNGICQEGR 241



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 127/249 (51%), Gaps = 3/249 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K +  N++ ++++I+ L R  + +   ++L Q+       P  + +  ++  + + + ++
Sbjct: 290 KGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPK-YGCTPNSLSYNPILHAFCKQKKMD 348

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
           RA+   + M S      +  +NTLL      G++D   EL  Q+ +K  +P   SYN +I
Sbjct: 349 RAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVI 408

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G   + + ++A ++ +EMV + LQP ++T+ T+  GLC E R++EA++    +  +  +
Sbjct: 409 DGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDM-GI 467

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +P+  ++ +++ GLC   E   A+ +   M+ +    +   Y+ LI  L   G   E   
Sbjct: 468 RPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARE 527

Query: 280 ILKEMKERG 288
           +L E+  RG
Sbjct: 528 LLGELCSRG 536


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 140/268 (52%), Gaps = 5/268 (1%)

Query: 76  DTRIVPKEIIFCNVIGFYG--RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133
           D ++V    +  N +  YG  + + +  A  ++ EM S  +   V  ++ L++     GK
Sbjct: 187 DGKLVQLNAVMYNTV-IYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGK 245

Query: 134 LDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           L    +LF +I+ + + PD  ++NIL+ G    R++++   VF  M+K+ + P +VT+ +
Sbjct: 246 LKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNS 305

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           L+ G CL   V+ A K   + M    V PD + +  LI G C + ++  A+ +  EM   
Sbjct: 306 LMDGYCLVKEVNTA-KSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCK 364

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
            I  +   Y+SLI  L K+GR +    ++ +M +RG  PN +TYN++I    K    + A
Sbjct: 365 NIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKA 424

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCK 340
             ++ +  D+G + +  +Y +++ GLCK
Sbjct: 425 IALITKFKDQGIQPSMYTYTILIDGLCK 452



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           + +A    D++ +    +    + TL++     G+     +L Q ++ K V  +A  YN 
Sbjct: 141 IHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNT 200

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I+G    + + DA+ ++ EMV + + P +VT+  LI G  +  ++ +A+ L   I+ + 
Sbjct: 201 VIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKII-LE 259

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N+KPDG  F  L+ G C   ++     V   M++  I  D   Y+SL+         N  
Sbjct: 260 NIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTA 319

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            +I   M + G  P+  +YN LI+GFCK +  + A  + +EM  K    N ++YN ++ G
Sbjct: 320 KSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDG 379

Query: 338 LCKDGK 343
           L K G+
Sbjct: 380 LSKSGR 385



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 153/319 (47%), Gaps = 23/319 (7%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + N + Y+ +I  + + K  ++   +  ++     I P  + +  +I  +     L+
Sbjct: 189 KLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMV-SKGISPNVVTYSALISGFFVVGKLK 247

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
            A+ +F+++   N++     FN L++      K+   K +F +M K  + PD  +YN L+
Sbjct: 248 DAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLM 307

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G  + + +  A  +F+ M +  + P + ++  LI G C   +VD+A+ L  + M   N+
Sbjct: 308 DGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNE-MHCKNI 366

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   + SLI GL   G +S AL + ++M    +  +   Y+S+I ALFK  + ++  A
Sbjct: 367 IPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIA 426

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEED--------------------FEAAFTILDEM 319
           ++ + K++G +P+  TY  LI G CK E                     F+ A ++L +M
Sbjct: 427 LITKFKDQGIQPSMYTYTILIDGLCKVEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKM 486

Query: 320 GDKGCKANPISYNVILGGL 338
            D  C  N ++Y + +  L
Sbjct: 487 KDSSCIPNAVTYEITIRSL 505



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 116/254 (45%), Gaps = 17/254 (6%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I+P  + + +++  Y   + +  A  +F+ M+   V   ++ +N L+N      K+D+  
Sbjct: 296 IIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAM 355

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            LF  M  K + P+  +YN LI G   S R+  A ++ D+M  R + P ++T+ ++I  L
Sbjct: 356 NLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDAL 415

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
               +VD+A+ L     +   ++P    +  LI GLC V               +  ++ 
Sbjct: 416 FKTHQVDKAIALITK-FKDQGIQPSMYTYTILIDGLCKV---------------EGYDIT 459

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+ +I    K G  +E  ++L +MK+  C PN+VTY   I       + + A  +  
Sbjct: 460 VNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLLDNNENDKAEKLFR 519

Query: 318 EMGDKGCKANPISY 331
           EM  +G      SY
Sbjct: 520 EMITRGLLNRSASY 533



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 106/215 (49%), Gaps = 6/215 (2%)

Query: 134 LDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           +D    LF +++ +  +P A  +N ++   V S+       +  +M  R ++P L     
Sbjct: 67  VDDAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFNCNI 126

Query: 193 LIYGLC----LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           LIY  C    +  ++ +A  L  D +       D   + +LI GLC VGE   AL + + 
Sbjct: 127 LIYCFCQLGLIPCQIHQAF-LFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQR 185

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           +    ++++A +Y+++I  + K    N+   +  EM  +G  PN VTY+ALISGF     
Sbjct: 186 VDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGK 245

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + A  + +++  +  K +  ++N+++ G CKD K
Sbjct: 246 LKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRK 280


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 136/284 (47%), Gaps = 35/284 (12%)

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDA 152
           G+  +++ A  M+ +M +  ++ ++  FNT++N     G++   K +   + +Y   P+A
Sbjct: 178 GKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNA 237

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +Y  LI G   +  L+ A+ +FD MVK    P  VT+ TLI GLC E R++EA+ + E+
Sbjct: 238 FTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEE 297

Query: 213 IMR------VYNVK----------------------------PDGQVFASLIKGLCAVGE 238
           +++      VY                               P+ Q F +LI GL   G+
Sbjct: 298 MVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGK 357

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
             +A+G+  +M+ D +      Y++LI+ L   GR      I K M   G  P++ TYN 
Sbjct: 358 FEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNE 417

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +I  FC   D + A  I D+M   G   N I+YN ++ G CK G
Sbjct: 418 IIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQG 461



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 142/295 (48%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y + +  L  A    E  ++L ++K     VP    F  +I    R    E A+ ++ +M
Sbjct: 310 YTIPLVSLCDAGCSSEAVELLGKMK-KRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKM 368

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSRRL 168
            +  +  T   +N L+N     G+ +    +F+ M  + S P   +YN +I    +   +
Sbjct: 369 LADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDI 428

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A  +FD+M+K    P ++T+ TLIYG C +  ++ A++L E IM+   +KPD   +  
Sbjct: 429 QKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLE-IMKGNGLKPDAWTYTE 487

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G    G+L  A  +   M+   I  +   Y+++I   F   + ++  A+  +M E G
Sbjct: 488 LISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESG 547

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             P+S TYN +ISGF K      A     +M  +G   N I+Y   + GLC++G+
Sbjct: 548 NLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGR 602



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 141/299 (47%), Gaps = 7/299 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQIL-HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDE 108
           Y+ +I +L     F+    I    L H +  +P    +  +I  +     +++A+ +FD+
Sbjct: 380 YNALINQLCVEGRFETAFTIFKWMLSHGS--LPSTQTYNEIIKCFCLMGDIQKAMVIFDK 437

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRR 167
           M        V  +NTL+      G L+    L +IM+   + PDA +Y  LI G     +
Sbjct: 438 MLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGK 497

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           LE A  +F  M++  + P  VT+  +I G     +VD+AL L   ++   N+ P  Q + 
Sbjct: 498 LEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNL-PSSQTYN 556

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            +I G      +S A     +MV+  +  +   Y+S I  L + GR      I  EM++R
Sbjct: 557 VMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKR 616

Query: 288 GCKPNSVTYNALISGFCKEEDFEAA--FTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
              PN  TY++LI G C+E   E A  + +L  +   GC+ N  +Y  ++ GLC +G+C
Sbjct: 617 NYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRC 675



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 130/250 (52%), Gaps = 9/250 (3%)

Query: 99  LERALQMFDEMSS-FNVQMTVKFFNTLLNPKLTCGKLDRM---KELF-QIMEKYVSPDAC 153
           ++R  Q   E++S ++   T+  F TLL   +  GK D +   ++++ +++   + P   
Sbjct: 147 VKRVTQFLSEINSKYDFGYTLCSFTTLL---IQLGKFDMVDLARDMYIKMLNSGIRPSLL 203

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           ++N +I+      R+++A  +   + +    P   T+ +LI G C    +D A  + + +
Sbjct: 204 TFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRM 263

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           ++     P+   +++LI GLC+ G L  A+ + EEMV+  IE     Y+  + +L  AG 
Sbjct: 264 VKD-GCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGC 322

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +E   +L +MK+RGC PN  T+ ALISG  ++  FE A  +  +M   G     ++YN 
Sbjct: 323 SSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNA 382

Query: 334 ILGGLCKDGK 343
           ++  LC +G+
Sbjct: 383 LINQLCVEGR 392



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 141/316 (44%), Gaps = 26/316 (8%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP  +    Y  +I+   R    +    + + +  +  I P  + +  +I  Y     +
Sbjct: 478 LKPDAWT---YTELISGFSRGGKLEHATSLFYGMM-EHGISPNHVTYTAIIDGYFNLAKV 533

Query: 100 ERALQMFDEM---------SSFNVQMT-VKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS 149
           + AL +F +M          ++NV ++     N++   +  CGK+ +   L         
Sbjct: 534 DDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLL--------- 584

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P+  +Y   I G   + R   A+K+F EM KR   P L T+ +LIYGLC E R ++A ++
Sbjct: 585 PNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDA-EM 643

Query: 210 KEDIMRV--YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
              + R+  Y  +P+   + +L+KGLC  G    A  +   M +  ++    IY +L+  
Sbjct: 644 YNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIG 703

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
             K  +      I   M   G + +   Y ALI   CKE   E A  I   M +K   ++
Sbjct: 704 ECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSD 763

Query: 328 PISYNVILGGLCKDGK 343
            +++ V+L GL K+G+
Sbjct: 764 EVAWTVLLDGLLKEGE 779


>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
 gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
          Length = 1283

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 134/269 (49%), Gaps = 8/269 (2%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR--- 136
           +P   +F  ++G Y R+   + A Q+ D M   +++  +  FNTL+N +   G L     
Sbjct: 58  LPTVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVA 117

Query: 137 MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI-- 194
           ++ L ++ +  + PDA +YN LI  C     L+DA  VF+EM+    +P L T+  ++  
Sbjct: 118 LELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSV 177

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
           +G C + +  E L  KE + + +  +PD   + SL+      G++     V EE+V+   
Sbjct: 178 HGRCGKAQEAE-LMFKELVEKGF--QPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGF 234

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
             D   Y+++I    K GR +    +  EM+  GC P++VTY  L+    K +    A  
Sbjct: 235 RKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGK 294

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +L+EM D G K   ++++ ++    K G+
Sbjct: 295 VLEEMADAGLKPTLVTFSALICAYAKSGR 323



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 132/274 (48%), Gaps = 3/274 (1%)

Query: 68  QILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127
           ++LH+++    + P  I +  +I    +   L+ A+ +F+EM +   +  +  +N +++ 
Sbjct: 119 ELLHEVRQ-AGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSV 177

Query: 128 KLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
              CGK    + +F +++EK   PDA +YN L++       +E   +V +E+VK   +  
Sbjct: 178 HGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKD 237

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
            +T+ T+I+      R+D AL L ++ MR     PD   +  L+  L  +  +S A  V 
Sbjct: 238 GITYNTMIHMYGKMGRLDLALGLYDE-MRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVL 296

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           EEM    ++     +S+LI A  K+GR+++       M E G KP+ + Y  ++  F + 
Sbjct: 297 EEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARS 356

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           ++      +   M   G K +   Y V+L  L K
Sbjct: 357 DETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAK 390



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 114/243 (46%), Gaps = 3/243 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R +L  Y+ +++  GR     E + +  +L  +    P  + + +++  + +   +ER  
Sbjct: 165 RPDLWTYNAMVSVHGRCGKAQEAELMFKELV-EKGFQPDAVTYNSLLYAFAKEGDVERVE 223

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
           ++ +E+     +     +NT+++     G+LD    L+  M     +PDA +Y +L+   
Sbjct: 224 RVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSL 283

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
               R+ +A KV +EM    L+PTLVTF  LI       R D+A +   D M    VKPD
Sbjct: 284 GKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAER-TFDRMVESGVKPD 342

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              +  ++       E    + +   M++D  + D G+Y  L++AL K    +E   +++
Sbjct: 343 RLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQ 402

Query: 283 EMK 285
           +M+
Sbjct: 403 DME 405



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 125/285 (43%), Gaps = 6/285 (2%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           +I   G+ K++ + +  +  LK ++ +  +  I+  +I  Y  + L E A  +FD M   
Sbjct: 594 MIEAYGKLKLWQQAENFVKGLKQESGVDRR--IWNALIHAYAESGLYEHARAIFDIMIKK 651

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDA 171
               TV+  N ++   +  G+LD +  + Q ++   +     +  +++     +  + + 
Sbjct: 652 GPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEV 711

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV-DEALKLKEDIMRVYNVKPDGQVFASLI 230
            K+++ M      P +  +  +I  LC   R  D  L + E  M     KPD  V  +L+
Sbjct: 712 MKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAE--MEGAGFKPDLVVLNTLL 769

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
                 G     + V   ++   +E D   Y++LI    +  R  E   +L EM +RG  
Sbjct: 770 LMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLT 829

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           P   +Y  L++   K + +E A  + +EM  KG + N   Y++++
Sbjct: 830 PKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMM 874



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 112/260 (43%), Gaps = 25/260 (9%)

Query: 43  FRYNLLHYDLIIT---KLGRAKM----FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           FR + + Y+ +I    K+GR  +    +DEM+ I           P  + +  ++   G+
Sbjct: 234 FRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAI--------GCTPDAVTYTVLVDSLGK 285

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACS 154
              +  A ++ +EM+   ++ T+  F+ L+      G+ D  +  F +++E  V PD  +
Sbjct: 286 MDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLA 345

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           Y +++     S        ++  M+K   +P    +  L+  L      DE   + +D+ 
Sbjct: 346 YLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDME 405

Query: 215 RVYNVKPDGQVFAS-LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
            V+ + P   V +S LIK  C    +S    + +       E D     S++ A  K G+
Sbjct: 406 AVFEMNP--LVISSILIKAEC----ISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGK 459

Query: 274 KNEFPAILKEMKERGCKPNS 293
             +  ++L+ +++    PNS
Sbjct: 460 HEKGLSLLEWIRQH--VPNS 477


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 162/345 (46%), Gaps = 17/345 (4%)

Query: 10  CLPRLQKD--PKLALQLFKNPNPNPN-DTEAHPLKPFRYNLLH----YDLIITKLGRAKM 62
           C   L K+  P ++ ++ K  + NP+          F+ N+ H    Y+L+   L +A M
Sbjct: 59  CFCYLSKNLNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGM 118

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
            D   Q+   +K D  I P   +   ++  +     L  A  +   + S+ V+      N
Sbjct: 119 HDLAGQMFECMKSDG-ISPNSRLLGFLVSSFAEKGKLHCATALL--LQSYEVEGCCMVVN 175

Query: 123 TLLNPKLTCGKLDRMKELFQIMEKYVSPDAC----SYNILIHGCVVSRRLEDAWKVFDEM 178
           +LLN   T  KLDR+++  ++ E+++   +C    ++NILI G     + E A ++   M
Sbjct: 176 SLLN---TLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGM 232

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
                 P +VT+ TLI G C    + +A ++ +D+       PD   + S+I G C  G+
Sbjct: 233 SGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGK 292

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
           +  A  + ++M+R  I      ++ L+    KAG  +    I  +M   GC P+ VT+ +
Sbjct: 293 MQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTS 352

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           LI G+C+       F + +EM  +G   N  +Y++++  LCK+ +
Sbjct: 353 LIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENR 397



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 124/248 (50%), Gaps = 7/248 (2%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY--VSPDACSYNI 157
           E+A+++   MS F     +  +NTL+       +L +  E+F  ++     SPD  +Y  
Sbjct: 223 EKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTS 282

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI--YGLCLELRVDEALKLKEDIMR 215
           +I G   + ++++A  + D+M++  + PT VTF  L+  Y    E+   E ++ K   M 
Sbjct: 283 MISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGK---MI 339

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
            +   PD   F SLI G C VG+++    + EEM    +  +A  YS LI+AL K  R  
Sbjct: 340 SFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLL 399

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +   +L ++  +   P    YN +I GFCK      A  I++EM  K CK + I++ +++
Sbjct: 400 KARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILI 459

Query: 336 GGLCKDGK 343
            G C  G+
Sbjct: 460 IGHCMKGR 467



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 109/232 (46%), Gaps = 3/232 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I+   +A    E   +L  +     I P  + F  ++  Y +A  +  A ++
Sbjct: 276 DVVTYTSMISGYCKAGKMQEASVLLDDMLR-LGIYPTNVTFNVLVDGYAKAGEMHTAEEI 334

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
             +M SF     V  F +L++     G++++   L++ M  + + P+A +Y+ILI+    
Sbjct: 335 RGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCK 394

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             RL  A ++  ++  + + P    +  +I G C   +V+EA+ + E+ M     KPD  
Sbjct: 395 ENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEE-MEKKKCKPDKI 453

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
            F  LI G C  G +  A+ +  +MV      D    SSL+S L KAG   E
Sbjct: 454 TFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKE 505


>gi|255660874|gb|ACU25606.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 484

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 166/325 (51%), Gaps = 15/325 (4%)

Query: 31  NPNDTEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVP 81
           + + T  H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +  
Sbjct: 20  HSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEW 78

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
            E ++  +I  YG+  +++ +++MF +M    V+ T+K +N L    L  G+    K  F
Sbjct: 79  DEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYF 138

Query: 142 -QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
            +++ + + P   ++N++I G  +S ++E A + F++M  R + P +VT+ T+I G    
Sbjct: 139 NKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRV 198

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            +++EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  
Sbjct: 199 KKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAIT 257

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDE 318
           YS+L+  L  A + +E   ILKEM ++   P  NS+ +  LIS  CK  + +AA  +L  
Sbjct: 258 YSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSI-FLRLISSHCKSGNLDAAADVLKA 316

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M           Y +++   CK G+
Sbjct: 317 MIRLSVPTEAGHYGILIENFCKAGQ 341



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 130/263 (49%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F++M S  +   V  +NT++N      K++  ++ F  M+ + 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   +++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + +++M  Y    D  +F  LI   C  G L  A  V + M+R  +  +AG Y  LI  
Sbjct: 276 VILKEMMDKYLAPTDNSIFLRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGILIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             KAG+ ++   +L ++ E+    +P S        YN +I   C       A T++ ++
Sbjct: 336 FCKAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAYNLMIEYLCNNGQASKAETLVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +P + N ++ G  ++G
Sbjct: 396 MKLGVQ-DPTALNTLIRGHSQEG 417



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 135/297 (45%), Gaps = 18/297 (6%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D ++  + P   +++ Y+ +I    R K  +E ++   ++K    I P  + +  +I  Y
Sbjct: 175 DMKSREISP---DVVTYNTMINGYYRVKKMEEAEKYFVEMK-GRNIEPTVVTYTTLIKGY 230

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSP-D 151
                ++ AL++ +EM  F ++     ++TLL       K+   + +  ++M+KY++P D
Sbjct: 231 VSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-- 209
              +  LI     S  L+ A  V   M++  +      +G LI   C   + D+A+KL  
Sbjct: 291 NSIFLRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGILIENFCKAGQYDKAVKLLD 350

Query: 210 ----KEDIMR---VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
               K+ I+R     +++P    +  +I+ LC  G+ S A  +  ++++  ++ D    +
Sbjct: 351 KLIEKDIILRPQSTLHLEPSA--YNLMIEYLCNNGQASKAETLVRQLMKLGVQ-DPTALN 407

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           +LI    + G  +    +LK M  R        YN+L+  + K+ +   A   LD M
Sbjct: 408 TLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSM 464


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 149/295 (50%), Gaps = 5/295 (1%)

Query: 51  DLIITKL-GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           D +I  L GR +  + +  +   L+   R VP  + +  ++    +    ++A+++ DEM
Sbjct: 164 DTLIRGLCGRGRTANALAVLDEMLRR--RCVPDVVTYTILLEATCKRSGYKQAMKLLDEM 221

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
                   +  +N ++N     G++D   E  + +  Y   P+  SYNI++ G   + R 
Sbjct: 222 RDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERW 281

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           EDA ++  EM ++   P +VTF  LI  LC +  V+ AL++ E I + Y   P+   +  
Sbjct: 282 EDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPK-YGCSPNSLSYNP 340

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+   C   ++  A+   + MV      D   Y++L++AL ++G  +    +L ++K++G
Sbjct: 341 LLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKG 400

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C P  ++YN +I G  K    + A  +L+EM  KG + + I+Y+ I  GLC++ +
Sbjct: 401 CAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDR 455



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 134/271 (49%), Gaps = 9/271 (3%)

Query: 78  RIVPKEIIFCNVI--GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC---G 132
           R V ++   C+ +  G  GR R    AL + DEM        V  +  LL  + TC   G
Sbjct: 154 RAVERDAYTCDTLIRGLCGRGRT-ANALAVLDEMLRRRCVPDVVTYTILL--EATCKRSG 210

Query: 133 KLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
               MK L ++ +K  +PD  +YN++++G     R++DA +    +     +P  V++  
Sbjct: 211 YKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNI 270

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           ++ GLC   R ++A +L  + M      P+   F  LI  LC  G +  AL V E++ + 
Sbjct: 271 VLKGLCTAERWEDAEELMGE-MGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKY 329

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
               ++  Y+ L+ A  K  + ++  A L  M  RGC P+ V+YN L++  C+  + + A
Sbjct: 330 GCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVA 389

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +L ++ DKGC    ISYN ++ GL K GK
Sbjct: 390 VELLHQLKDKGCAPVLISYNTVIDGLTKAGK 420



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 141/298 (47%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y++++  + +    D+  + L  L       P  + +  V+     A   E A ++
Sbjct: 229 DIVTYNVVVNGICQEGRVDDAIEFLKNLPS-YGCEPNTVSYNIVLKGLCTAERWEDAEEL 287

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
             EM        V  FN L++     G ++   E+ + + KY  SP++ SYN L+H    
Sbjct: 288 MGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCK 347

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            ++++ A    D MV R   P +V++ TL+  LC    VD A++L    ++     P   
Sbjct: 348 QKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQ-LKDKGCAPVLI 406

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + ++I GL   G+   AL +  EMV   ++ D   YS++ + L +  R  +      ++
Sbjct: 407 SYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKV 466

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++ G +PN+V YNA+I G CK  +  +A  +   M   GC  N  +Y +++ GL  +G
Sbjct: 467 QDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEG 524



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 103/208 (49%), Gaps = 12/208 (5%)

Query: 132 GKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           G+LD   E  +++     PDA +   LI     S R  +A +V          P ++ + 
Sbjct: 81  GELD---EALRLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAA-----CGPDVMAYN 132

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
            ++ G C   +VD A +   +      V+ D     +LI+GLC  G  + AL V +EM+R
Sbjct: 133 AMMAGYCGAGQVDAARRWCAE----RAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLR 188

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
            +   D   Y+ L+ A  K     +   +L EM+++GC P+ VTYN +++G C+E   + 
Sbjct: 189 RRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDD 248

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLC 339
           A   L  +   GC+ N +SYN++L GLC
Sbjct: 249 AIEFLKNLPSYGCEPNTVSYNIVLKGLC 276



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 38/225 (16%)

Query: 118 VKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           V  +N ++      G++D  +      E+ V  DA + + LI G     R  +A  V DE
Sbjct: 128 VMAYNAMMAGYCGAGQVDAARR--WCAERAVERDAYTCDTLIRGLCGRGRTANALAVLDE 185

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M++RR  P +VT+  L+   C      +A+KL ++ MR     PD   +  ++ G+C   
Sbjct: 186 MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDE-MRDKGCTPDIVTYNVVVNGIC--- 241

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
                   +E  V D IE                         LK +   GC+PN+V+YN
Sbjct: 242 --------QEGRVDDAIEF------------------------LKNLPSYGCEPNTVSYN 269

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            ++ G C  E +E A  ++ EMG KGC  N +++N+++  LC+ G
Sbjct: 270 IVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKG 314



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 130/279 (46%), Gaps = 38/279 (13%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ ++++I+ L R  + +   ++L Q+       P  + +  ++  + + + +++A+  
Sbjct: 299 NVVTFNMLISFLCRKGLVEPALEVLEQIPK-YGCSPNSLSYNPLLHAFCKQKKMDKAMAF 357

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            D M S      +  +NTLL      G++D   EL  Q+ +K  +P   SYN +I G   
Sbjct: 358 LDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTK 417

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + + ++A ++ +EMV + LQP ++T+ T+  GLC E R+++A++    +  +  ++P+  
Sbjct: 418 AGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDM-GIRPNTV 476

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++ ++I GLC   E   A+ +   M+ +                                
Sbjct: 477 LYNAIILGLCKRRETHSAIDLFAYMIGN-------------------------------- 504

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
              GC PN  TY  LI G   E   + A  +LDE+  +G
Sbjct: 505 ---GCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRG 540



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           +V    +P   T   LI  L    R  EA ++      +    PD   + +++ G C  G
Sbjct: 89  LVGSARRPDAGTCAALIKKLSASGRTAEARRV------LAACGPDVMAYNAMMAGYCGAG 142

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           ++  A   +       +E DA    +LI  L   GR     A+L EM  R C P+ VTY 
Sbjct: 143 QVDAA---RRWCAERAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYT 199

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            L+   CK   ++ A  +LDEM DKGC  + ++YNV++ G+C++G+
Sbjct: 200 ILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGR 245


>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 418

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 137/282 (48%), Gaps = 42/282 (14%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FDE++ + ++ +V  FNTL+N  +  G LD 
Sbjct: 133 PASLYFFNILMHRFCKEGEMRL---AQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M    V PD  +Y++LI+G     ++ DA ++F EM+   L P  VTF TLI 
Sbjct: 190 GFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMR--------VYN--------------------------VKP 221
           G C    +D A++  ++++R         YN                          +KP
Sbjct: 250 GHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKP 309

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +LI G C  G+L  AL  ++ M+++ I +D   Y++LIS L + G+  +   +L
Sbjct: 310 DKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKML 369

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +EM   G KP++ TY  +I+ FCK+ D +    +L EM   G
Sbjct: 370 REMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDG 411



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 123/228 (53%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G++   + +F  + K+ + P   S+N L++G +    L++ +++ 
Sbjct: 135 SLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
             M    +QP + T+  LI GLC E ++++A +L  +++    + P+G  F +LI G C 
Sbjct: 195 SAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIG-NGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+   +EM+R     D   Y++LI  L K G   +   ++ EM  +G KP+ +T
Sbjct: 254 TGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E A      M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQ 361



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 108/222 (48%), Gaps = 2/222 (0%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           H + + P    +  +I    +   +  A ++F EM    +      F TL++     G +
Sbjct: 198 HASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSI 257

Query: 135 DRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           D   E + +++ +  SPD  +YN LI+G      L+ A  + DEM  + L+P  +T+ TL
Sbjct: 258 DLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTL 317

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G C E  ++ AL  ++ +++  N++ D   + +LI GLC  G+   A  +  EM+   
Sbjct: 318 IDGSCKEGDLETALYYRKRMIKE-NIRLDDVAYTALISGLCREGQSVDAEKMLREMLSVG 376

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
           ++ D G Y+ +I+   K G       +LKEM+  G  P  VT
Sbjct: 377 LKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDGHVPCVVT 418



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 51/103 (49%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  +E++          ++ L+    K G      ++  E+ + G +P+ V++N L+
Sbjct: 119 LVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESK 221


>gi|255660946|gb|ACU25642.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 484

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 158/304 (51%), Gaps = 6/304 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F +N   +  II  LGRA   +  + IL  +     +   E ++  +I  YG+A +++ +
Sbjct: 41  FEHNRETHHKIIEILGRASKLNHARCILLDMPKKG-LEWDEDLWVLLIDSYGKAGIVQES 99

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
           +++F +M    V+ T+K ++ L    L  G+    K  F +++ +   P   ++NI+I G
Sbjct: 100 VKLFQKMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGNEPTRHTFNIMIWG 159

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
             +S ++E A + F++M  R + P +VT+ T+I G     +++EA K   + M+  N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREIMPDVVTYNTMIXGYYRVKKMEEAEKYFVE-MKGRNIEP 218

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
               + +LIKG  +V  +  AL + EEM    I+ +A  YS+L+  L  A + +E  +IL
Sbjct: 219 TVVTYTTLIKGYVSVDRVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAQKMSEARSIL 278

Query: 282 KEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           KEM E+   P  NS+ +  LISG CK  D +AA  +L  M           Y V++   C
Sbjct: 279 KEMVEKYITPTDNSI-FLRLISGQCKAGDLDAAADVLKAMIRLSVPTEAGHYGVLIENYC 337

Query: 340 KDGK 343
           K G+
Sbjct: 338 KAGQ 341



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 130/263 (49%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F++M S  +   V  +NT++       K++  ++ F  M+ + 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDMKSREIMPDVVTYNTMIXGYYRVKKMEEAEKYFVEMKGRN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   R++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDRVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAQKMSEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + ++++  Y    D  +F  LI G C  G+L  A  V + M+R  +  +AG Y  LI  
Sbjct: 276 SILKEMVEKYITPTDNSIFLRLISGQCKAGDLDAAADVLKAMIRLSVPTEAGHYGVLIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             KAG+ ++   +L  + E+    +P S        YN LI   C       A +++ ++
Sbjct: 336 YCKAGQYDQAVKLLDRLIEKDIILRPQSTLHLEPSAYNPLIEYLCNNGQTAKAESLVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +P + N ++ G  ++G
Sbjct: 396 MKLGVQ-DPTALNALIRGHSQEG 417



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 137/306 (44%), Gaps = 49/306 (16%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I+P  + +  +I  Y R + +E A + F EM   N++ TV  + TL+   ++  ++D   
Sbjct: 181 IMPDVVTYNTMIXGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDAL 240

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT-------LVT- 189
            L + M+ + + P+A +Y+ L+ G   ++++ +A  +  EMV++ + PT       L++ 
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAQKMSEARSILKEMVEKYITPTDNSIFLRLISG 300

Query: 190 ----------------------------FGTLIYGLCLELRVDEALKL------KEDIMR 215
                                       +G LI   C   + D+A+KL      K+ I+R
Sbjct: 301 QCKAGDLDAAADVLKAMIRLSVPTEAGHYGVLIENYCKAGQYDQAVKLLDRLIEKDIILR 360

Query: 216 ---VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
                +++P    +  LI+ LC  G+ + A  +  ++++  ++ D    ++LI    + G
Sbjct: 361 PQSTLHLEPSA--YNPLIEYLCNNGQTAKAESLVRQLMKLGVQ-DPTALNALIRGHSQEG 417

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
             +    +LK M  R  +     Y++L+  + K+ +   A   LD M + G   +P  + 
Sbjct: 418 SPDSAFELLKIMLRRKARSEKSAYDSLVQSYLKKSEPADAKAALDSMIENGHLPDPALFR 477

Query: 333 VILGGL 338
            ++  L
Sbjct: 478 SVMESL 483


>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 482

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 152/333 (45%), Gaps = 11/333 (3%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L RL      AL  FK  + +P+         + +    +D  I    R + F  +  ++
Sbjct: 65  LKRLWNHGPKALHFFKILSHHPS---------YCHQASSFDHAIDICARLRDFRTLWFLV 115

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130
            +++   R+ P    F  +   Y       RA+ +F  M  +     +  FNT+L+    
Sbjct: 116 SRMR-SCRLGPSPRTFAIIAERYAAMGKPHRAVTVFMSMHEYGCFQDLSSFNTILDVLCK 174

Query: 131 CGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
             +++    LF+ ++     D  SYNI+++G  + +R   A ++  EMV+R L P L T+
Sbjct: 175 SKRVEMAYNLFKALKGKFKADCVSYNIIVNGWCLIKRTPKALEMLKEMVERGLTPNLTTY 234

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
             ++ G     + +EA     + M+      D   + S+I GL  VGE+  A  V  +MV
Sbjct: 235 NIMLNGYFRAGQTNEAWGFFLE-MKKRKCDIDVVTYTSVIHGLGVVGEIKRARNVFNQMV 293

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
           +D +      +++LI  L K         I +EM +RG  PNS+TYN +I G C   + +
Sbjct: 294 KDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYNLVIRGLCHVGEMQ 353

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            A  +++ M D  C+ N  +YN+++   C  G+
Sbjct: 354 RAMELMERMEDDDCEPNVQTYNILIRYFCDAGE 386



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 136/290 (46%), Gaps = 8/290 (2%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+ + + Y++I+      K   +  ++L ++  +  + P    +  ++  Y RA     A
Sbjct: 192 FKADCVSYNIIVNGWCLIKRTPKALEMLKEMV-ERGLTPNLTTYNIMLNGYFRAGQTNEA 250

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
              F EM      + V  + ++++     G++ R + +F Q+++  V P   ++N LI  
Sbjct: 251 WGFFLEMKKRKCDIDVVTYTSVIHGLGVVGEIKRARNVFNQMVKDGVLPSVATFNALIQI 310

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 +E+A  +F+EMVKR   P  +T+  +I GLC    +  A++L E  M   + +P
Sbjct: 311 LCKKDSVENAILIFEEMVKRGYVPNSITYNLVIRGLCHVGEMQRAMELMER-MEDDDCEP 369

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF-KAGRKNEFPA- 279
           + Q +  LI+  C  GE+   L + ++M       +   Y+ LI+++F +    N   A 
Sbjct: 370 NVQTYNILIRYFCDAGEIEKGLDLFQKMGNGDCLPNLDTYNILINSMFVRKNSDNLLVAG 429

Query: 280 -ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            +L EM +RG  P  +T+N ++ G     + + A  IL   G  GC   P
Sbjct: 430 KLLVEMVDRGFLPRKLTFNRVLDGLLLTGNQDFAKEILSLQG--GCGRLP 477


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 141/289 (48%), Gaps = 3/289 (1%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           +I  LG+    D+  +I  ++  D   +P  +++ ++I  + +    E   +M+ EM   
Sbjct: 346 LIDGLGKQGRVDDAYRIYERM-LDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRS 404

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDA 171
                +   NT ++     G+ ++ + LF+ I  +   PD  SY+ILIH  V +    + 
Sbjct: 405 GCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARET 464

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIK 231
           ++++  M  +        + T+I G C   +V++A +L E+ M+     P    + S++ 
Sbjct: 465 YELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEE-MKTMGHHPTVVTYGSVVD 523

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           GL  +  L  A  + EE   + IE++  IYSSLI    K GR +E   +++EM ++G  P
Sbjct: 524 GLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTP 583

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           N  T+N L+ G  K E+   A      M D  C  N I+Y +++ GLCK
Sbjct: 584 NVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCK 632



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 143/296 (48%), Gaps = 4/296 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ I+T LG+    D+  +I  ++K D   +P    +  +IG   +A  +E A ++
Sbjct: 235 SVVAYNCILTCLGKKGKTDKALRIFEEMKRDA--MPNLPTYNIIIGMLCKAGNVEAAFKV 292

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            D M    +   V+  N +++      KLD    +F+ M+ K  SPD  ++  LI G   
Sbjct: 293 RDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGK 352

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R++DA+++++ M+     P +V + +LI       R ++  K+ +++MR     PD  
Sbjct: 353 QGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRS-GCSPDLM 411

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           +  + +  +   GE      + EE+       D   YS LI +L KAG   E   +   M
Sbjct: 412 LLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAM 471

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           K++GC  ++  YN +I GFCK      A+ +L+EM   G     ++Y  ++ GL K
Sbjct: 472 KDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAK 527



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 154/336 (45%), Gaps = 39/336 (11%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  +++ Y++ I   G+    D   +  H++K +  +VP ++ + +++G   +A  L+ A
Sbjct: 127 FDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANG-LVPDDVTYTSMMGVLCKANRLDEA 185

Query: 103 LQMFDEMSSFNVQMTVKF-FNTLL-------------------------------NPKLT 130
           +++F++M   N Q+   + +NT++                               N  LT
Sbjct: 186 VEIFEQMEQ-NRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILT 244

Query: 131 C----GKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
           C    GK D+   +F+ M++   P+  +YNI+I     +  +E A+KV D M +  L P 
Sbjct: 245 CLGKKGKTDKALRIFEEMKRDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPN 304

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
           + T   +I  LC   ++DEA  + E  M      PDG  F SLI GL   G +  A  + 
Sbjct: 305 VRTINIMIDRLCKAQKLDEACSIFEG-MDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIY 363

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           E M+      +  +Y+SLI   FK  RK +   + KEM   GC P+ +  N  +    K 
Sbjct: 364 ERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKA 423

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            + E    + +E+  +G   +  SY++++  L K G
Sbjct: 424 GETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAG 459



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 143/295 (48%), Gaps = 9/295 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I  L +A    E  ++ + +K D   V     +  VI  + ++  + +A Q+ +EM
Sbjct: 448 YSILIHSLVKAGFARETYELYYAMK-DQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEM 506

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP----DACSYNILIHGCVVS 165
            +     TV  + ++++      K+DR+ E + + E+  S     +   Y+ LI G    
Sbjct: 507 KTMGHHPTVVTYGSVVDG---LAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKV 563

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            R+++A+ V +EM+++ L P + T+  L+ GL     ++EAL   +  M+     P+   
Sbjct: 564 GRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQS-MKDLKCTPNQIT 622

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           +  LI GLC V + + A    +EM +  ++ +   Y+++IS L K+G   +  ++ +  +
Sbjct: 623 YCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFR 682

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             G  P+S +YNA+I G         A+ + +E   KGC  +  +   +L  L K
Sbjct: 683 ASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRLKGCSIHTKTCVALLDALHK 737



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 135/296 (45%), Gaps = 26/296 (8%)

Query: 59  RAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV 118
           R + FD ++QIL ++       P       ++    ++R L  A  +   M  F  +   
Sbjct: 3   RTRNFDYLEQILGEMSI-AGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAF 61

Query: 119 KFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGC-----VVSR--RLEDA 171
             + TL+      G+ DRM  LF  M++        Y + +H       V SR  R++ A
Sbjct: 62  SAYTTLIGALSEVGESDRMLALFNQMQEL------GYEVNVHLLTTLIRVFSREGRVDAA 115

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLEL-----RVDEALKLKEDIMRVYNVKPDGQVF 226
             + DEM        +V     +Y +C++      +VD A K   + M+   + PD   +
Sbjct: 116 LSLLDEMKSNTFDADIV-----LYNVCIDCFGKVGKVDMAWKFFHE-MKANGLVPDDVTY 169

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
            S++  LC    L  A+ + E+M +++    A  Y+++I     AG+ +E  ++L+  + 
Sbjct: 170 TSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRA 229

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +GC P+ V YN +++   K+   + A  I +EM  +    N  +YN+I+G LCK G
Sbjct: 230 KGCIPSVVAYNCILTCLGKKGKTDKALRIFEEM-KRDAMPNLPTYNIIIGMLCKAG 284


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 144/299 (48%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            ++ Y+ II  + R+   +  +    +++    ++P  I + ++I  Y +A  L+ AL +
Sbjct: 336 TVVTYNTIIHGMFRSGNVEAARMKFVEMR-AMGLLPDLITYNSLINGYCKAGNLKEALWL 394

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F ++    +  +V  +N LL+     G L+  +   Q M E+   PD  +Y IL++G   
Sbjct: 395 FGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRK 454

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            R L    + FDEM+ + LQP    + T I    +     EA +L E +M    +  D  
Sbjct: 455 VRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTE-VMISRGISSDTV 513

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +   + GLC  G L  A  +  +MV D ++ D   Y+ LI A  + GR  E   I   M
Sbjct: 514 TYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGM 573

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  P++VTY   I  +C+  +  +A+    +M ++G + N ++YNV++  LC+ G+
Sbjct: 574 LVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGR 632



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 118/245 (48%), Gaps = 2/245 (0%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDAC 153
           + R L    + FDEM S  +Q     +NT ++ +L  G      +L ++M  + +S D  
Sbjct: 454 KVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTV 513

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YNI + G   S  L+DA+ ++ +MV   LQP  +T+  LI+  C   R+ EA  +  D 
Sbjct: 514 TYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIF-DG 572

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M V  + P    +   I   C  G L  A G  ++M+ + +  +   Y+ LI AL + GR
Sbjct: 573 MLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGR 632

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            N       EM ERG  PN  TY  LI G CKE ++E A  +  EM   G   +  ++N 
Sbjct: 633 TNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNA 692

Query: 334 ILGGL 338
           +  G 
Sbjct: 693 LFKGF 697



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 120/243 (49%), Gaps = 5/243 (2%)

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
           L  F EM+   V   +K  N +L       + D M+ ++ ++++  + P   +YN L+  
Sbjct: 181 LAAFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDS 240

Query: 162 CVVSRRLEDAWKVFDEMVKR--RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
                R++ A K+  EM  R     P+ VT+  +I GL  +  +++A +L  D MR+ + 
Sbjct: 241 FFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLV-DRMRM-SK 298

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           K     F  LI G  A G +  A  ++ EM  + I      Y+++I  +F++G       
Sbjct: 299 KASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARM 358

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
              EM+  G  P+ +TYN+LI+G+CK  + + A  +  ++   G   + ++YN++L G C
Sbjct: 359 KFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYC 418

Query: 340 KDG 342
           + G
Sbjct: 419 RLG 421



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 141/316 (44%), Gaps = 14/316 (4%)

Query: 29  NPNPNDTEAHPLKPFRYNLLHY---------DLIITKLGRAKMFDEMQQILHQLKHDTRI 79
           NP P+      L  FR  + H+         +L++  L     +D+M+ +  ++     I
Sbjct: 170 NPAPSTCSTLCLAAFR-EMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQ-LGI 227

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSS--FNVQMTVKFFNTLLNPKLTCGKLDRM 137
            P  + +  ++  + R   +++A ++  EM +       +   +N ++N     G+L++ 
Sbjct: 228 EPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKA 287

Query: 138 KELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            +L   M       A ++N LI G      +E A  +  EM    + PT+VT+ T+I+G+
Sbjct: 288 AQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGM 347

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
                V EA ++K   MR   + PD   + SLI G C  G L  AL +  ++ R  +   
Sbjct: 348 FRSGNV-EAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPS 406

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+ L+    + G   E     +EM E+GC+P+  TY  L++G  K  +        D
Sbjct: 407 VLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFD 466

Query: 318 EMGDKGCKANPISYNV 333
           EM  KG + +  +YN 
Sbjct: 467 EMLSKGLQPDCFAYNT 482



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 126/265 (47%), Gaps = 12/265 (4%)

Query: 80  VPKEIIFCNVI--GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           VP  I  CN++       AR  +    ++ EM    ++ ++  +NTLL+     G++D+ 
Sbjct: 192 VPPFIKECNLVLRALRDEARW-DDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQA 250

Query: 138 KELFQIMEKYVSPDAC-----SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
            +L + ME    P  C     +YN++I+G      LE A ++ D M   + + +  TF  
Sbjct: 251 AKLLREME--ARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMSK-KASAFTFNP 307

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           LI G      V++A  L+ + M    + P    + ++I G+   G +  A     EM   
Sbjct: 308 LITGYFARGSVEKAGALQLE-MENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAM 366

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
            +  D   Y+SLI+   KAG   E   +  ++K  G  P+ +TYN L+ G+C+  D E A
Sbjct: 367 GLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEA 426

Query: 313 FTILDEMGDKGCKANPISYNVILGG 337
                EM ++GC+ +  +Y +++ G
Sbjct: 427 RRFKQEMVEQGCQPDVSTYTILMNG 451



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 2/82 (2%)

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK- 322
           ++ AL    R ++  ++  EM + G +P+ VTYN L+  F +E   + A  +L EM  + 
Sbjct: 202 VLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARP 261

Query: 323 -GCKANPISYNVILGGLCKDGK 343
            GC  + ++YNV++ GL + G+
Sbjct: 262 GGCLPSDVTYNVVINGLARKGE 283


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 136/284 (47%), Gaps = 35/284 (12%)

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDA 152
           G+  +++ A  M+ +M +  ++ ++  FNT++N     G++   K +   + +Y   P+A
Sbjct: 178 GKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNA 237

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +Y  LI G   +  L+ A+ +FD MVK    P  VT+ TLI GLC E R++EA+ + E+
Sbjct: 238 FTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEE 297

Query: 213 IMR------VYNVK----------------------------PDGQVFASLIKGLCAVGE 238
           +++      VY                               P+ Q F +LI GL   G+
Sbjct: 298 MVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGK 357

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
             +A+G+  +M+ D +      Y++LI+ L   GR      I K M   G  P++ TYN 
Sbjct: 358 FEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNE 417

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +I  FC   D + A  I D+M   G   N I+YN ++ G CK G
Sbjct: 418 IIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQG 461



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 142/295 (48%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y + +  L  A    E  ++L ++K     VP    F  +I    R    E A+ ++ +M
Sbjct: 310 YTIPLVSLCDAGCSSEAVELLGKMK-KRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKM 368

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSRRL 168
            +  +  T   +N L+N     G+ +    +F+ M  + S P   +YN +I    +   +
Sbjct: 369 LADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDI 428

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A  +FD+M+K    P ++T+ TLIYG C +  ++ A++L E IM+   +KPD   +  
Sbjct: 429 QKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLE-IMKGNGLKPDAWTYTE 487

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G    G+L  A  +   M+   I  +   Y+++I   F   + ++  A+  +M E G
Sbjct: 488 LISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESG 547

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             P+S TYN +ISGF K      A     +M  +G   N I+Y   + GLC++G+
Sbjct: 548 NLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGR 602



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 141/299 (47%), Gaps = 7/299 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQIL-HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDE 108
           Y+ +I +L     F+    I    L H +  +P    +  +I  +     +++A+ +FD+
Sbjct: 380 YNALINQLCVEGRFETAFTIFKWMLSHGS--LPSTQTYNEIIKCFCLMGDIQKAMVIFDK 437

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRR 167
           M        V  +NTL+      G L+    L +IM+   + PDA +Y  LI G     +
Sbjct: 438 MLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGK 497

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           LE A  +F  M++  + P  VT+  +I G     +VD+AL L   ++   N+ P  Q + 
Sbjct: 498 LEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNL-PSSQTYN 556

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            +I G      +S A     +MV+  +  +   Y+S I  L + GR      I  EM++R
Sbjct: 557 VMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKR 616

Query: 288 GCKPNSVTYNALISGFCKEEDFEAA--FTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
              PN  TY++LI G C+E   E A  + +L  +   GC+ N  +Y  ++ GLC +G+C
Sbjct: 617 NYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRC 675



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 130/250 (52%), Gaps = 9/250 (3%)

Query: 99  LERALQMFDEMSS-FNVQMTVKFFNTLLNPKLTCGKLDRM---KELF-QIMEKYVSPDAC 153
           ++R  Q   E++S ++   T+  F TLL   +  GK D +   ++++ +++   + P   
Sbjct: 147 VKRVTQFLSEINSKYDFGYTLCSFTTLL---IQLGKFDMVDLARDMYIKMLNSGIRPSLL 203

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           ++N +I+      R+++A  +   + +    P   T+ +LI G C    +D A  + + +
Sbjct: 204 TFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRM 263

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           ++     P+   +++LI GLC+ G L  A+ + EEMV+  IE     Y+  + +L  AG 
Sbjct: 264 VKD-GCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGC 322

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +E   +L +MK+RGC PN  T+ ALISG  ++  FE A  +  +M   G     ++YN 
Sbjct: 323 SSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNA 382

Query: 334 ILGGLCKDGK 343
           ++  LC +G+
Sbjct: 383 LINQLCVEGR 392



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 140/316 (44%), Gaps = 26/316 (8%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP  +    Y  +I+   R    +    + + +  +  I P  + +  +I  Y     +
Sbjct: 478 LKPDAWT---YTELISGFSRGGKLEHATSLFYGMM-EHGISPNHVTYTAIIDGYFNLAKV 533

Query: 100 ERALQMFDEM---------SSFNVQMT-VKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS 149
           + AL +F +M          ++NV ++     N++   +  CGK+ +   L         
Sbjct: 534 DDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLL--------- 584

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P+  +Y   I G   + R   A+K+F EM KR   P L T+ +LIYGLC E R ++A ++
Sbjct: 585 PNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDA-EM 643

Query: 210 KEDIMRV--YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
              + R+  Y  +P+   + +L+KGLC  G    A  +   M +  ++    IY +L+  
Sbjct: 644 YNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIG 703

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
             K  +      I   M   G + +   Y ALI   CKE   E A  I   M +K   ++
Sbjct: 704 ECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSD 763

Query: 328 PISYNVILGGLCKDGK 343
            + + V+L GL K+G+
Sbjct: 764 EVVWTVLLDGLLKEGE 779


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 148/285 (51%), Gaps = 8/285 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLL 99
           K  R N++ Y  ++  L  +  + +  ++L  +    +I P  I +  ++  F    ++L
Sbjct: 219 KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK-KKITPNVITYSALLDAFVKNGKVL 277

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           E A ++F+EM   ++   +  +++L+N      ++D   ++F +M  K    D  SYN L
Sbjct: 278 E-AKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTL 336

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G   ++R+ED  K+F EM +R L    VT+ TLI G      VD+A +     M  + 
Sbjct: 337 INGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQ-MDFFG 395

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + PD   +  L+ GLC  GEL  AL + E+M + ++++D   Y+++I  + K G+  E  
Sbjct: 396 ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAW 455

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKE---EDFEAAFTILDEMG 320
           ++   +  +G KP+ VTY  ++SG C +    + EA +T + + G
Sbjct: 456 SLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 138/264 (52%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +   +++  + R   +  A+ + D+M     +  +  +N +++      +++   + 
Sbjct: 153 PDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDF 212

Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F+ +E K + P+  +Y  L++G   S R  DA ++  +M+K+++ P ++T+  L+     
Sbjct: 213 FKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVK 272

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             +V EA +L E+++R+ ++ PD   ++SL+ GLC    +  A  + + MV      D  
Sbjct: 273 NGKVLEAKELFEEMVRM-SIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVV 331

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI+   KA R  +   + +EM +RG   N+VTYN LI GF +  D + A     +M
Sbjct: 332 SYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 391

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
              G   +  +YN++LGGLC +G+
Sbjct: 392 DFFGISPDIWTYNILLGGLCDNGE 415



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 131/264 (49%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKE 139
           P  + +  +I    + + +  A   F E+    ++  V  +  L+N      +  D  + 
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 247

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L  +++K ++P+  +Y+ L+   V + ++ +A ++F+EMV+  + P +VT+ +L+ GLCL
Sbjct: 248 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCL 307

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R+DEA ++  D+M       D   + +LI G C    +   + +  EM +  +  +  
Sbjct: 308 HDRIDEANQM-FDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTV 366

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI   F+AG  ++      +M   G  P+  TYN L+ G C   + E A  I ++M
Sbjct: 367 TYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM 426

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             +    + ++Y  ++ G+CK GK
Sbjct: 427 QKREMDLDIVTYTTVIRGMCKTGK 450



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 142/287 (49%), Gaps = 4/287 (1%)

Query: 55  TKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNV 114
           T+L   K+ D +      +K  +R  P  + F  ++    + +  +  + +  +M    +
Sbjct: 59  TRLRDIKLNDAIDLFSDMVK--SRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGI 116

Query: 115 QMTVKFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWK 173
           +  +  FN ++N    C ++   +  L ++++    PD  +   L++G     R+ DA  
Sbjct: 117 RNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVS 176

Query: 174 VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGL 233
           + D+MV+   +P +V +  +I  LC   RV++A    ++I R   ++P+   + +L+ GL
Sbjct: 177 LVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIER-KGIRPNVVTYTALVNGL 235

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           C     S A  +  +M++ KI  +   YS+L+ A  K G+  E   + +EM      P+ 
Sbjct: 236 CNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDI 295

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           VTY++L++G C  +  + A  + D M  KGC A+ +SYN ++ G CK
Sbjct: 296 VTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCK 342



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 2/212 (0%)

Query: 133 KLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           KL+   +LF  M K    P    +N L+   V  ++ +    +  +M    ++  L TF 
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
            +I   C   +V  AL +   ++++   +PD     SL+ G C    +S A+ + ++MV 
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKL-GYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE 183

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
              + D   Y+++I +L K  R N+     KE++ +G +PN VTY AL++G C    +  
Sbjct: 184 IGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSD 243

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           A  +L +M  K    N I+Y+ +L    K+GK
Sbjct: 244 AARLLSDMIKKKITPNVITYSALLDAFVKNGK 275


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 151/311 (48%), Gaps = 10/311 (3%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           E   +KP   N + Y++++    +    D     L +++ ++   P  + F  +I  Y +
Sbjct: 379 EGKGVKP---NAVTYNVVVKWYVKEGKMDNAGNELRKME-ESGFSPDCVTFNTLINGYCK 434

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG--KLDRMKELFQIMEKY-VSPDA 152
           A  L  A +M DEMS   ++M     NT+L+    CG  KLD   +L     K     D 
Sbjct: 435 AGRLSEAFRMMDEMSRKGLKMNSVTLNTILHT--LCGERKLDDAYKLLSSASKRGYFVDE 492

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            SY  LI G     +  +A K++DEM ++ + P+++T+ T+I GLC   + D+++    +
Sbjct: 493 VSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNE 552

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           ++    + PD   + ++I G C  G++  A     +MV+   + D    + L+  L   G
Sbjct: 553 LLES-GLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEG 611

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
             ++   +      +G   ++VTYN +ISG CKE+ FE AF +L EM +K    +  +YN
Sbjct: 612 MLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYN 671

Query: 333 VILGGLCKDGK 343
            IL  L   G+
Sbjct: 672 AILSALADAGR 682



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 147/298 (49%), Gaps = 5/298 (1%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           + Y+ I+  L +    +E + +L  +K++  ++P    F  ++  Y +   L+ A Q+ D
Sbjct: 248 VSYNTILDVLCKKGKLNEARDLLLDMKNNG-LLPNRNTFNILVSGYCKLGWLKEAAQVID 306

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSR 166
            M+  NV   V  +N L+      GK+D    L   ME   + PD  +YN LI+GC    
Sbjct: 307 LMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCS 366

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA-LKLKEDIMRVYNVKPDGQV 225
                +++ D+M  + ++P  VT+  ++     E ++D A  +L++  M      PD   
Sbjct: 367 SSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRK--MEESGFSPDCVT 424

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F +LI G C  G LS A  + +EM R  ++M++   ++++  L    + ++   +L    
Sbjct: 425 FNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSAS 484

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +RG   + V+Y  LI G+ K+     A  + DEM +K    + I+YN ++GGLC  GK
Sbjct: 485 KRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGK 542



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 149/324 (45%), Gaps = 26/324 (8%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + N +  + I+  L   +  D+  ++L         V +      ++G++   + +E
Sbjct: 451 KGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVE 510

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILI 159
            A++++DEM    +  ++  +NT++      GK D+ + +L +++E  + PD  +YN +I
Sbjct: 511 -AMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTII 569

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G     ++E A++  ++MVK+  +P L T   L+ GLC E  +D+ALKL    +     
Sbjct: 570 LGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKA 629

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
             D   + ++I GLC       A  +  EM   K+  D   Y++++SAL  AGR  E   
Sbjct: 630 -IDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEE 688

Query: 280 ILKEMKERG-----------------------CKPNSVTYNALISGFCKEEDFEAAFTIL 316
            +  + E+G                         PNSVT++  I+  C +  ++ A  ++
Sbjct: 689 FMSRIVEQGKLQDQTISLNKRKIESSSETSQESDPNSVTFSEQINELCTQGKYKDAMHMV 748

Query: 317 DEMGDKGCKANPISYNVILGGLCK 340
            E   KG   +  +Y  ++ GL K
Sbjct: 749 QESTQKGITLHKSTYISLMEGLIK 772



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 131/264 (49%), Gaps = 5/264 (1%)

Query: 84  IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL---TCGKLDRMKEL 140
           +I    IG Y        A Q+F+ M   +++  +   NTL+N  +   +   +   K +
Sbjct: 140 VILDTSIGAYVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAI 199

Query: 141 FQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F  +++  V  +  ++NILI+GC +  +L +A  +  +M      P  V++ T++  LC 
Sbjct: 200 FSDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCK 259

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           + +++EA  L  D M+   + P+   F  L+ G C +G L  A  V + M ++ +  D  
Sbjct: 260 KGKLNEARDLLLD-MKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVW 318

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+ LI  L K G+ +E   +  EM+     P+ VTYN LI+G          F ++D+M
Sbjct: 319 TYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKM 378

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             KG K N ++YNV++    K+GK
Sbjct: 379 EGKGVKPNAVTYNVVVKWYVKEGK 402



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 2/240 (0%)

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHGCV 163
           +F ++    V++    FN L+       KL     L   M+ +   PD  SYN ++    
Sbjct: 199 IFSDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLC 258

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              +L +A  +  +M    L P   TF  L+ G C    + EA ++  D+M   NV PD 
Sbjct: 259 KKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVI-DLMAQNNVLPDV 317

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             +  LI GLC  G++  A  +K+EM   K+  D   Y++LI+  F      +   ++ +
Sbjct: 318 WTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDK 377

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M+ +G KPN+VTYN ++  + KE   + A   L +M + G   + +++N ++ G CK G+
Sbjct: 378 MEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGR 437


>gi|159464329|ref|XP_001690394.1| hypothetical protein CHLREDRAFT_114572 [Chlamydomonas reinhardtii]
 gi|158279894|gb|EDP05653.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 287

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 135/259 (52%), Gaps = 2/259 (0%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIM 144
           +  +I   G  + L RAL++  EM S  +   V  ++ L+N  +   +LD  ++++ Q++
Sbjct: 3   YTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQML 62

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
           E+  SP+  +YNILI      R+  +  ++   +V+  +Q  + T+ T+I       + +
Sbjct: 63  EEGCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSGQPE 122

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           +ALK+ E ++    VKP    + +LI      G++  AL +  +M+R   E +   YSSL
Sbjct: 123 QALKVYEKMLAA-GVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYSSL 181

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           ISA  KAGR      +  +M +  CKPN VTYN+LI+       +E A  + ++M  +GC
Sbjct: 182 ISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQTQGC 241

Query: 325 KANPISYNVILGGLCKDGK 343
           K + I+Y  ++    + G+
Sbjct: 242 KPDSITYCGLITAYERGGQ 260



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 2/153 (1%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           + P    +  +I  YG+   +E+AL +F +M     +  V  +++L++     G+ +   
Sbjct: 136 VKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYSSLISACEKAGRWEMAL 195

Query: 139 ELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           ELF  M K    P+  +YN LI  C      E A ++F++M  +  +P  +T+  LI   
Sbjct: 196 ELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAY 255

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
               +   ALK  E  M+     PD  VF SL+
Sbjct: 256 ERGGQWRRALKAFEQ-MQSQGCHPDAAVFNSLM 287


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 131/243 (53%), Gaps = 2/243 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIH 160
           AL + ++M +  ++  V  ++T+++        D    LF  ME K V P+  +Y+ LI 
Sbjct: 237 ALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLIS 296

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                 R  DA ++  +M++R++ P LVTF  LI     + ++ +A KL E++++  ++ 
Sbjct: 297 CLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIK-RSID 355

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   ++SLI G C +  L  A  + E M+R     +   Y++LI+   KA R ++   +
Sbjct: 356 PNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMEL 415

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            +EM +RG   N+VTY  LI GF +  D + A  +  +M   G   N ++YN++L GLCK
Sbjct: 416 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCK 475

Query: 341 DGK 343
           +GK
Sbjct: 476 NGK 478



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 153/299 (51%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y  ++  L +    D    +L++++   +I    +I+  VI    + R  + AL +
Sbjct: 217 DLVTYGAVVNGLCKRGDTDLALNLLNKMEA-AKIEANVVIYSTVIDSLCKYRHEDDALNL 275

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           F EM +  V+  V  +++L++     G+  D  + L  ++E+ ++P+  +++ LI   V 
Sbjct: 276 FTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVK 335

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L  A K+++EM+KR + P + T+ +LI G C+  R+ EA ++ E ++R  +  P+  
Sbjct: 336 KGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIR-KDCLPNVV 394

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G C    +   + +  EM +  +  +   Y++LI   F+A   +    + K+M
Sbjct: 395 TYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 454

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  PN +TYN L+ G CK      A  + + +     + +  +YN+++ G+CK GK
Sbjct: 455 VSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK 513



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 124/266 (46%), Gaps = 4/266 (1%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P  + F  +I G +   +  E A+ + D M     Q  +  +  ++N     G  D    
Sbjct: 181 PDTVTFTTLIHGLFLHNKASE-AVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALN 239

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L   ME   +  +   Y+ +I      R  +DA  +F EM  + ++P ++T+ +LI  LC
Sbjct: 240 LLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLC 299

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              R  +A +L  D++    + P+   F++LI      G+L  A  + EEM++  I+ + 
Sbjct: 300 NYGRWSDASRLLSDMIE-RKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNI 358

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             YSSLI+      R  E   +L+ M  + C PN VTYN LI+GFCK +  +    +  E
Sbjct: 359 FTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFRE 418

Query: 319 MGDKGCKANPISYNVILGGLCKDGKC 344
           M  +G   N ++Y  ++ G  +   C
Sbjct: 419 MSQRGLVGNTVTYTTLIHGFFQARDC 444



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 139/302 (46%), Gaps = 19/302 (6%)

Query: 60  AKMFDEMQQILHQ---LKHDTRIVPKEIIFCNVIGFYGRARL--------------LERA 102
           AK+    ++ +H+   ++ +    P    FC    F G+                 L+ A
Sbjct: 3   AKISSSAKRFVHRSLVVRGNAATFPLSFSFCRRRAFSGKTSYDYREVLRTGLSDIELDDA 62

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
           + +F  M+      ++  F+ LL+      K D +    + ME   +S +  +YNILI+ 
Sbjct: 63  IGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINC 122

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                RL  A  +  +M+K   +P +VT  +L+ G C   R+ +A+ L + ++ +   KP
Sbjct: 123 FCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEM-GYKP 181

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   F +LI GL    + S A+ + + MV+   + D   Y ++++ L K G  +    +L
Sbjct: 182 DTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLL 241

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            +M+    + N V Y+ +I   CK    + A  +  EM +KG + N I+Y+ ++  LC  
Sbjct: 242 NKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNY 301

Query: 342 GK 343
           G+
Sbjct: 302 GR 303


>gi|307105412|gb|EFN53661.1| hypothetical protein CHLNCDRAFT_58444 [Chlorella variabilis]
          Length = 1131

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 150/302 (49%), Gaps = 15/302 (4%)

Query: 52  LIITKLGR-------AKMFDEMQQILHQLKHDTRIVP--KEIIFCNVIGFYGRARLLERA 102
           ++I  LG+       A++FD    +L +L   + + P   E  F ++I      + L RA
Sbjct: 255 MVIKDLGKGGLPHRGAQLFD----LLRRLGPGSPLAPLLDEFTFTSMISNCVAQQDLGRA 310

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILIHG 161
           + + +EM    ++  V  F+ L+N  + CG+     ++++ M+    P +  +YN LI  
Sbjct: 311 MALAEEMRDRGIERNVHTFSALMNVCIKCGQYKLALDVYRDMQAAGCPANVVTYNTLIDV 370

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              S + E+A  V ++M + R+QP   TF TL+       +  EAL++ E  M   +  P
Sbjct: 371 YGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQEALRVYEQ-MAASSHPP 429

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   + +LI      G+L   L V +EMV+   E     YSSLISA  KAG       + 
Sbjct: 430 NTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYSSLISACEKAGEWKLALQLF 489

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           +EM+  GC PN ++YN+LI+   +   +E A  + ++M  +GC+ + +SY  ++    + 
Sbjct: 490 EEMRGEGCVPNVISYNSLITACAQGAQWEKAAEVFEQMQRQGCRPDVVSYTALIQAYERG 549

Query: 342 GK 343
           G+
Sbjct: 550 GQ 551


>gi|255660864|gb|ACU25601.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 484

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 166/325 (51%), Gaps = 15/325 (4%)

Query: 31  NPNDTEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVP 81
           + + T  H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +  
Sbjct: 20  HSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEW 78

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
            E ++  +I  YG+  +++ +++MF +M    V+ T+K +N L    L  G+    K  F
Sbjct: 79  DEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYF 138

Query: 142 -QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
            +++ + + P   ++N++I G  +S ++E A + F++M  R + P +VT+ T+I G    
Sbjct: 139 NKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRV 198

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            +++EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  
Sbjct: 199 KKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAIT 257

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDE 318
           YS+L+  L  A + +E   ILKEM ++   P  NS+ +  LIS  CK  + +AA  +L  
Sbjct: 258 YSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSI-FLRLISSHCKSGNLDAAVDVLKA 316

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M           Y +++   CK G+
Sbjct: 317 MIRLSVPTEAGHYGLLIENFCKAGQ 341



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 131/263 (49%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F++M S  +   V  +NT++N      K++  ++ F  M+ + 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   +++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + +++M  Y    D  +F  LI   C  G L  A+ V + M+R  +  +AG Y  LI  
Sbjct: 276 VILKEMMDKYLAPTDNSIFLRLISSHCKSGNLDAAVDVLKAMIRLSVPTEAGHYGLLIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             KAG+ ++   +L ++ E+    +P S        YN +I   C       A T++ ++
Sbjct: 336 FCKAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQASKAETLVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +P + N ++ G  ++G
Sbjct: 396 MKLGVQ-DPTALNTLIRGHSQEG 417



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 135/297 (45%), Gaps = 18/297 (6%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D ++  + P   +++ Y+ +I    R K  +E ++   ++K    I P  + +  +I  Y
Sbjct: 175 DMKSREISP---DVVTYNTMINGYYRVKKMEEAEKYFVEMK-GRNIEPTVVTYTTLIKGY 230

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSP-D 151
                ++ AL++ +EM  F ++     ++TLL       K+   + +  ++M+KY++P D
Sbjct: 231 VSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-- 209
              +  LI     S  L+ A  V   M++  +      +G LI   C   + D+A+KL  
Sbjct: 291 NSIFLRLISSHCKSGNLDAAVDVLKAMIRLSVPTEAGHYGLLIENFCKAGQYDKAVKLLD 350

Query: 210 ----KEDIMR---VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
               K+ I+R     +++P    +  +I+ LC  G+ S A  +  ++++  ++ D    +
Sbjct: 351 KLIEKDIILRPQSTLHLEPSA--YNPMIEYLCNNGQASKAETLVRQLMKLGVQ-DPTALN 407

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           +LI    + G  +    +LK M  R        YN+L+  + K+ +   A   LD M
Sbjct: 408 TLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPADAKAALDSM 464


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 161/346 (46%), Gaps = 37/346 (10%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           NDT  +     R N++ Y +II  L +   ++E   + +++  D  + P  + F  +I  
Sbjct: 224 NDTSPYVFNC-RPNVISYSIIIDGLCKVGNWEEAICLFNEMV-DQGVQPNVVTFSVLIDM 281

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPD 151
             +   + +A ++ + M    +   +  + +L+      G L+  KELF  M  K   PD
Sbjct: 282 LCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPD 341

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             SYN+LI+G   + ++E+A K+F+EM+   + P + T G L+  L L  +VD+A +L  
Sbjct: 342 VISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFR 401

Query: 212 DI----------------------------------MRVYNVKPDGQVFASLIKGLCAVG 237
            I                                  +  YN+K D + F  LI GLC  G
Sbjct: 402 VIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAG 461

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           +L  A  + E++  + I+ DA  YSS+I    K G+ ++   + ++M+E GC P+ +TY+
Sbjct: 462 KLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYS 521

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            L+ GF +    E    +L  M +K    +   Y ++   +CKD K
Sbjct: 522 ILMRGFYESNKLEKVVQLLHRMIEKDVWPDDGIYAIVEDMVCKDEK 567



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 119/229 (51%), Gaps = 6/229 (2%)

Query: 121 FNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
            N L+N      +++  +  +  IM +   PD  ++  LI G  V  R+ +A K+F  M 
Sbjct: 129 LNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQ 188

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR-----VYNVKPDGQVFASLIKGLC 234
           K    P +VT+GTLI GLC    ++ ALK  ++++      V+N +P+   ++ +I GLC
Sbjct: 189 KLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLC 248

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
            VG    A+ +  EMV   ++ +   +S LI  L K G+  +   +L+ M + G  PN  
Sbjct: 249 KVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLF 308

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           TY +LI GFC   D  +A  +   M  KG + + ISYN+++ G CK  K
Sbjct: 309 TYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLK 357



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 90/207 (43%), Gaps = 17/207 (8%)

Query: 147 YVSPDACSYN----ILIHGCVV-SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
           + SP+  S+     + +H C   S  +  A + FD M++     ++ +F  L+ GL    
Sbjct: 51  HASPERISFQHGIPMFLHKCKTGSISVTQAHQFFDLMMR-----SIFSFNRLLAGLAKIE 105

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
              +   L +  M +  + PD      LI  LC V  ++  L     ++R     D   +
Sbjct: 106 HYSQVFSLYKQ-MHLAGLWPDLLTLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTF 164

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           ++LI  L    R  E   +   M++ GC PN VTY  LI G C   +   A     EM +
Sbjct: 165 TTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLN 224

Query: 322 K------GCKANPISYNVILGGLCKDG 342
                   C+ N ISY++I+ GLCK G
Sbjct: 225 DTSPYVFNCRPNVISYSIIIDGLCKVG 251



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 37/238 (15%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  I +  +I  Y +   +E A+++F+EM    +   VK    LL      GK+D  KEL
Sbjct: 340 PDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKEL 399

Query: 141 FQIMEKYVSP-DAC--------------------------SYNI---------LIHGCVV 164
           F++++ Y  P D C                          SYN+         LI G   
Sbjct: 400 FRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCK 459

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + +LE AW++F+++ +  +QP  + + ++I+G C + +VD+A  L +  M      PD  
Sbjct: 460 AGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQK-MEENGCSPDLI 518

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
            ++ L++G     +L   + +   M+   +  D GIY+ +   + K  +  E+  +L+
Sbjct: 519 TYSILMRGFYESNKLEKVVQLLHRMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQ 576


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
           thaliana]
          Length = 1184

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 119/223 (53%), Gaps = 2/223 (0%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           ++T++N     G+LD++ +L ++M+ K + P++  Y  +I       +L +A + F EM+
Sbjct: 727 YSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMI 786

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           ++ + P  V + TLI G C    +  A K   + M   ++ PD   + ++I G C +G++
Sbjct: 787 RQGILPDTVVYTTLIDGFCKRGDIRAASKFFYE-MHSRDITPDVLTYTAIISGFCQIGDM 845

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A  +  EM    +E D+  ++ LI+   KAG   +   +   M + GC PN VTY  L
Sbjct: 846 VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 905

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           I G CKE D ++A  +L EM   G + N  +YN I+ GLCK G
Sbjct: 906 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSG 948



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 148/304 (48%), Gaps = 3/304 (0%)

Query: 40   LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
            LK +  +++ Y  ++    R    D++ +++  +K    + P   I+ ++IG   R   L
Sbjct: 717  LKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG-LKPNSYIYGSIIGLLCRICKL 775

Query: 100  ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNIL 158
              A + F EM    +      + TL++     G +    + F ++  + ++PD  +Y  +
Sbjct: 776  AEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAI 835

Query: 159  IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
            I G      + +A K+F EM  + L+P  VTF  LI G C    + +A ++   +++   
Sbjct: 836  ISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQA-G 894

Query: 219  VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
              P+   + +LI GLC  G+L  A  +  EM +  ++ +   Y+S+++ L K+G   E  
Sbjct: 895  CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 954

Query: 279  AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             ++ E +  G   ++VTY  L+  +CK  + + A  IL EM  KG +   +++NV++ G 
Sbjct: 955  KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGF 1014

Query: 339  CKDG 342
            C  G
Sbjct: 1015 CLHG 1018



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 151/301 (50%), Gaps = 6/301 (1%)

Query: 40   LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
            LKP  Y    Y  II  L R     E ++   ++     I+P  +++  +I  + +   +
Sbjct: 755  LKPNSYI---YGSIIGLLCRICKLAEAEEAFSEMIRQG-ILPDTVVYTTLIDGFCKRGDI 810

Query: 100  ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNIL 158
              A + F EM S ++   V  +  +++     G +    +LF  M  K + PD+ ++  L
Sbjct: 811  RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 870

Query: 159  IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
            I+G   +  ++DA++V + M++    P +VT+ TLI GLC E  +D A +L  ++ ++  
Sbjct: 871  INGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI-G 929

Query: 219  VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
            ++P+   + S++ GLC  G +  A+ +  E     +  D   Y++L+ A  K+G  ++  
Sbjct: 930  LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 989

Query: 279  AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             ILKEM  +G +P  VT+N L++GFC     E    +L+ M  KG   N  ++N ++   
Sbjct: 990  EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 1049

Query: 339  C 339
            C
Sbjct: 1050 C 1050



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 143/303 (47%), Gaps = 9/303 (2%)

Query: 45  YNLLHYDLIIT---KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLER 101
           +N+  Y+++I    +LGR K    +  +L +LK  T   P  I +  V+  Y R   L++
Sbjct: 687 WNVASYNIVIHFVCQLGRIKEAHHLL-LLMELKGYT---PDVISYSTVVNGYCRFGELDK 742

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
             ++ + M    ++     + +++       KL   +E F +++ + + PD   Y  LI 
Sbjct: 743 VWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLID 802

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G      +  A K F EM  R + P ++T+  +I G C    + EA KL  + M    ++
Sbjct: 803 GFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE-MFCKGLE 861

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   F  LI G C  G +  A  V   M++     +   Y++LI  L K G  +    +
Sbjct: 862 PDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANEL 921

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L EM + G +PN  TYN++++G CK  + E A  ++ E    G  A+ ++Y  ++   CK
Sbjct: 922 LHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 981

Query: 341 DGK 343
            G+
Sbjct: 982 SGE 984



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 2/248 (0%)

Query: 81   PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
            P  + +  +I    +   L+ A ++  EM    +Q  +  +N+++N     G ++   +L
Sbjct: 897  PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL 956

Query: 141  FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
                E   ++ D  +Y  L+     S  ++ A ++  EM+ + LQPT+VTF  L+ G CL
Sbjct: 957  VGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCL 1016

Query: 200  ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
               +++  KL  + M    + P+   F SL+K  C    L  A  + ++M    +  D  
Sbjct: 1017 HGMLEDGEKLL-NWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGK 1075

Query: 260  IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             Y +L+    KA    E   + +EMK +G   +  TY+ LI GF K + F  A  + D+M
Sbjct: 1076 TYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQM 1135

Query: 320  GDKGCKAN 327
              +G  A+
Sbjct: 1136 RREGLAAD 1143



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 135/299 (45%), Gaps = 3/299 (1%)

Query: 46   NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            ++L Y  II+   +     E  ++ H++     + P  + F  +I  Y +A  ++ A ++
Sbjct: 828  DVLTYTAIISGFCQIGDMVEAGKLFHEM-FCKGLEPDSVTFTELINGYCKAGHMKDAFRV 886

Query: 106  FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
             + M        V  + TL++     G LD   EL   M K  + P+  +YN +++G   
Sbjct: 887  HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCK 946

Query: 165  SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            S  +E+A K+  E     L    VT+ TL+   C    +D+A ++ ++++    ++P   
Sbjct: 947  SGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLG-KGLQPTIV 1005

Query: 225  VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
             F  L+ G C  G L     +   M+   I  +A  ++SL+             AI K+M
Sbjct: 1006 TFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDM 1065

Query: 285  KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              RG  P+  TY  L+ G CK  + + A+ +  EM  KG   +  +Y+V++ G  K  K
Sbjct: 1066 CSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKK 1124


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 131/270 (48%), Gaps = 13/270 (4%)

Query: 78  RIVPKEIIFCNVI----GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133
           + +P  ++ CN++       GR    ER        ++     TV  +NT++N     G+
Sbjct: 92  KCLPLPVVPCNILIKRLCSGGRVADAERVF------ATLGASATVVTYNTMVNGYCRAGR 145

Query: 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           ++  + L   M     PD  ++N LI    V  R+ DA  VFD+M+ R   P++VT+  L
Sbjct: 146 IEDARRLISGMP--FPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSIL 203

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           +   C      +A+ L ++ MR    +PD   +  LI  +C  G++  AL +  ++    
Sbjct: 204 LDATCKASGYRQAMVLLDE-MRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHG 262

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
            + DA  Y+ ++ +L  + R  E   +  EM    C P+ VT+N +++  C++   + A 
Sbjct: 263 CKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAI 322

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ++D M + GC  + ++Y+ IL GLC  G+
Sbjct: 323 KVVDHMSEHGCIPDIVTYSSILDGLCDVGR 352



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 153/300 (51%), Gaps = 11/300 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNV-IGFYGRARLLERALQ 104
           +++ Y +++    +A  + +   +L +++   +    +I+  NV I        ++ AL 
Sbjct: 196 SVVTYSILLDATCKASGYRQAMVLLDEMR--AKGCEPDIVTYNVLINAMCNEGDVDEALN 253

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIH 160
           +  ++ S   +     +  +L  K  CG  +R KE+ ++  +  S    PD  ++N ++ 
Sbjct: 254 ILSDLPSHGCKPDAVTYTPVL--KSLCGS-ERWKEVEELFAEMASNKCAPDEVTFNTIVT 310

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                  ++ A KV D M +    P +VT+ +++ GLC   RVD+A++L    ++ Y  K
Sbjct: 311 SLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSR-LKSYGCK 369

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   + +++KGLC++ +   A  +  EMV      D   ++++I++L + G  +    +
Sbjct: 370 PDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKV 429

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +++M E GC P+ VTYN++I G C E   + A  +L  +   GCK + +++N +L GLC 
Sbjct: 430 VEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCS 489



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 155/346 (44%), Gaps = 41/346 (11%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           +D  +H  KP   + + Y  ++  L  ++ + E++++  ++  + +  P E+ F  ++  
Sbjct: 256 SDLPSHGCKP---DAVTYTPVLKSLCGSERWKEVEELFAEMASN-KCAPDEVTFNTIVTS 311

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPD 151
             +  L++RA+++ D MS       +  ++++L+     G++D   EL   ++ Y   PD
Sbjct: 312 LCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPD 371

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +Y  ++ G     + E A ++  EMV     P  VTF T+I  LC +  VD A+K+ E
Sbjct: 372 TIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVE 431

Query: 212 DI----------------------------------MRVYNVKPDGQVFASLIKGLCAVG 237
            +                                  ++ Y  KPD   F +L+KGLC+V 
Sbjct: 432 QMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVD 491

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
               A  +   M+      DA  ++++I++L + G   +    LK M E GC PN  TYN
Sbjct: 492 RWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYN 551

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ++    K    + A  +L  M +     + I+YN ++  + K GK
Sbjct: 552 IVVDALLKAGKTQEALKLLSGMTNG--TPDLITYNTVISNITKAGK 595



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 146/308 (47%), Gaps = 17/308 (5%)

Query: 42  PFRYNLLHYDLIITKL---GRA----KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYG 94
           PF  +   ++ +I  L   GR      +FD+M   LH+        P  + +  ++    
Sbjct: 157 PFPPDTFTFNPLIRALCVRGRVPDALAVFDDM---LHR-----GCSPSVVTYSILLDATC 208

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDAC 153
           +A    +A+ + DEM +   +  +  +N L+N     G +D    +   +  +   PDA 
Sbjct: 209 KASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAV 268

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +Y  ++     S R ++  ++F EM   +  P  VTF T++  LC +  VD A+K+  D 
Sbjct: 269 TYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVV-DH 327

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M  +   PD   ++S++ GLC VG +  A+ +   +     + D   Y++++  L    +
Sbjct: 328 MSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQ 387

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
                 ++ EM    C P+ VT+N +I+  C++   + A  ++++M + GC  + ++YN 
Sbjct: 388 WEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNS 447

Query: 334 ILGGLCKD 341
           I+ GLC +
Sbjct: 448 IIDGLCNE 455



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 139/299 (46%), Gaps = 5/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +++ Y+++I  +      DE   IL  L  H  +  P  + +  V+     +   +   +
Sbjct: 231 DIVTYNVLINAMCNEGDVDEALNILSDLPSHGCK--PDAVTYTPVLKSLCGSERWKEVEE 288

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCV 163
           +F EM+S         FNT++      G +DR +K +  + E    PD  +Y+ ++ G  
Sbjct: 289 LFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLC 348

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              R++DA ++   +     +P  + + T++ GLC   + + A +L  + M   +  PD 
Sbjct: 349 DVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAE-MVCSDCPPDE 407

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             F ++I  LC  G +  A+ V E+M  +    D   Y+S+I  L      ++   +L  
Sbjct: 408 VTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSN 467

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++  GCKP+ VT+N L+ G C  + +E A  ++  M    C  +  ++N ++  LC+ G
Sbjct: 468 LQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKG 526



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 115/244 (47%), Gaps = 6/244 (2%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTC---GKLDRMKELFQIMEKYVSPDACSYNIL 158
           AL +FD+M       +V  ++ LL+   TC   G    M  L ++  K   PD  +YN+L
Sbjct: 181 ALAVFDDMLHRGCSPSVVTYSILLDA--TCKASGYRQAMVLLDEMRAKGCEPDIVTYNVL 238

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+       +++A  +  ++     +P  VT+  ++  LC   R  E  +L  + M    
Sbjct: 239 INAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAE-MASNK 297

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
             PD   F +++  LC  G +  A+ V + M       D   YSS++  L   GR ++  
Sbjct: 298 CAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAV 357

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +L  +K  GCKP+++ Y  ++ G C  E +E A  ++ EM    C  + +++N ++  L
Sbjct: 358 ELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASL 417

Query: 339 CKDG 342
           C+ G
Sbjct: 418 CQKG 421



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 142/302 (47%), Gaps = 11/302 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           + + Y  ++  L   + ++  ++++ ++   +   P E+ F  VI    +  L++RA+++
Sbjct: 371 DTIAYTTVLKGLCSIEQWEHAEELMAEMVC-SDCPPDEVTFNTVIASLCQKGLVDRAIKV 429

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            ++MS       +  +N++++       +D   EL   ++ Y   PD  ++N L+ G   
Sbjct: 430 VEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCS 489

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC---LELRVDEALKLKEDIMRVYNVKP 221
             R EDA ++   M+     P   TF T+I  LC   L L+  E LK    IM      P
Sbjct: 490 VDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLK----IMAENGCIP 545

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   +  ++  L   G+   AL +   M     ++    Y+++IS + KAG+  E   +L
Sbjct: 546 NQSTYNIVVDALLKAGKTQEALKLLSGMTNGTPDLIT--YNTVISNITKAGKMEEALDLL 603

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           + M   G  P+++TY +L  G C+E+  + A  +L  + D G   +   YN IL G C++
Sbjct: 604 RVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQN 663

Query: 342 GK 343
            +
Sbjct: 664 WR 665



 Score = 44.7 bits (104), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 4/165 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y++++  L +A    E  ++L  + + T   P  I +  VI    +A  +E AL +
Sbjct: 546 NQSTYNIVVDALLKAGKTQEALKLLSGMTNGT---PDLITYNTVISNITKAGKMEEALDL 602

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVV 164
              M S  +      + +L          DR ++ L ++ +  +SPDA  YN ++ G   
Sbjct: 603 LRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQ 662

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           + R + A   F  MV     P   T+  L+  L  E  +DEA +L
Sbjct: 663 NWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQL 707


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 155/298 (52%), Gaps = 13/298 (4%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I  L RA ++ E+   L+ L  D    P    F  +I    +   +  A Q+ + M
Sbjct: 219 YNSLIHGLSRAGLWKEVTWFLN-LMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELM 277

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRL 168
                +  +  +NTL+N     G+L+   +LF+ + ++ +  +  SYNILI+G    +++
Sbjct: 278 HHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKI 337

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ---- 224
           ++A+++F+EM  + L+P+ VT+ TLI  LC   RV  A KL         ++  GQ    
Sbjct: 338 DEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKL------FVEMQTCGQFLKL 391

Query: 225 -VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             +  L+ GLC  G L  A+ + + + + + + +  ++S L+  + +AG+  E      E
Sbjct: 392 STYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDE 451

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           + + G +P+++ YN LI+G C +     A  +L +M +KGC  + I++NVI+  L K+
Sbjct: 452 ISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKE 509



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 124/243 (51%), Gaps = 2/243 (0%)

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
            AL MF EM    +   V  +++L++     G+L    E F+ ME + +S D  +YN LI
Sbjct: 164 EALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLI 223

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           HG   +   ++     + MV R   P   TF  LI GLC E +V EA ++ E +M     
Sbjct: 224 HGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILE-LMHHKGK 282

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +PD   + +L+ GLC VG+L  A  + E +    I+++   Y+ LI+   K  + +E   
Sbjct: 283 EPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFR 342

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + +EM+ +G KP++VTYN LI   C+      A  +  EM   G      +Y V+L GLC
Sbjct: 343 LFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLC 402

Query: 340 KDG 342
           K+G
Sbjct: 403 KNG 405



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 1/242 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161
           A+Q+FDEM+   +    K +  L+N      K     +L + M+     D  +Y ++I  
Sbjct: 96  AVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDS 155

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                   +A  +F EM+   + P +V + +L+ GLC   R+ EAL+  ++ M    +  
Sbjct: 156 LCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKE-MEGRGISA 214

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + SLI GL   G           MV      DA  ++ LI  L K G+  E   IL
Sbjct: 215 DVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQIL 274

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           + M  +G +P+ +TYN L++G C     E A  + + + D+G K N  SYN+++ G CKD
Sbjct: 275 ELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKD 334

Query: 342 GK 343
            K
Sbjct: 335 QK 336



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 103/200 (51%), Gaps = 2/200 (1%)

Query: 144 MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
           +++   PDA +   L+ G  +   + DA ++FDEM ++ L     T+G LI GLC   + 
Sbjct: 69  LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKT 128

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
             A+KL E +    N K D   +  +I  LC  G  + AL +  EM+   I  D  +YSS
Sbjct: 129 GLAIKLHEKMKG--NCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSS 186

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           L+  L + GR  E     KEM+ RG   +  TYN+LI G  +   ++     L+ M D+G
Sbjct: 187 LMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRG 246

Query: 324 CKANPISYNVILGGLCKDGK 343
              +  ++ +++ GLCK+GK
Sbjct: 247 FSPDAFTFTILIDGLCKEGK 266



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 111/209 (53%), Gaps = 2/209 (0%)

Query: 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           D ++   ++ EK +  DA +Y ILI+G   +R+   A K+ ++M K   +  + T+G +I
Sbjct: 95  DAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIKLHEKM-KGNCKGDVFTYGMII 153

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
             LC +    EAL +  +++    + PD  V++SL+ GLC  G L  AL   +EM    I
Sbjct: 154 DSLCKDGMTTEALDMFSEMIGA-GILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGI 212

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
             D   Y+SLI  L +AG   E    L  M +RG  P++ T+  LI G CKE     A  
Sbjct: 213 SADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQ 272

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           IL+ M  KG + + ++YN ++ GLC  G+
Sbjct: 273 ILELMHHKGKEPDILTYNTLMNGLCLVGQ 301



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 128/318 (40%), Gaps = 73/318 (22%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + F  +   + ++I  L +     E QQIL  + H  +  P  + +  ++        LE
Sbjct: 245 RGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGK-EPDILTYNTLMNGLCLVGQLE 303

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
            A ++F+ ++   +++ V  +N L+N      K+D    LF+ M  K + P   +YN LI
Sbjct: 304 DATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLI 363

Query: 160 HGCVVSRRLEDAWKVFDEMV-----------------------------------KRRLQ 184
                S R+  A K+F EM                                    K   +
Sbjct: 364 GALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHK 423

Query: 185 PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
           P +  F  L+ G+C   +++EA K  ++I +   ++PD   +  LI GLC  G LS A+ 
Sbjct: 424 PNIEVFSILLDGMCRAGKLEEAWKQFDEISK-NGLEPDTIAYNILINGLCNKGMLSEAV- 481

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
                                              +L +M+E+GC P+S+T+N +I    
Sbjct: 482 ----------------------------------KLLWQMEEKGCLPDSITFNVIIQNLL 507

Query: 305 KEEDFEAAFTILDEMGDK 322
           KE +   A  +L+EM ++
Sbjct: 508 KENEIHEAIQLLEEMRNR 525


>gi|108710734|gb|ABF98529.1| expressed protein [Oryza sativa Japonica Group]
 gi|125545490|gb|EAY91629.1| hypothetical protein OsI_13265 [Oryza sativa Indica Group]
          Length = 771

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 126/243 (51%), Gaps = 6/243 (2%)

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY---VSPDACSYNILIH 160
            +F EMS   +   ++F+N  ++      +LD   +LF  M+     + PD C++N LI 
Sbjct: 211 HVFGEMSRRGLPSNIRFYNICIHAFGKWRRLDMSLKLFAAMKTASPPLVPDICTHNSLIR 270

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
             VV  R+ DA  V+DEM    ++P + T+  ++ G C   R+D+AL+L +++   Y VK
Sbjct: 271 ALVVGARVADALVVYDEMKSFGIEPDVFTYRAIVDGCCKSFRMDDALRLFQEMRGSYGVK 330

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
            D  V+ SL+ GL    +L  A G  E MV D I+  A  ++++I  LFK GR      +
Sbjct: 331 GDAVVYNSLLDGLFKAKKLDEACGFFETMVADGIQCSASTHNTVIDGLFKNGRAEAACRL 390

Query: 281 LKEMKERGCKPNSVTYNALISGFCKE---EDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +++ +G   + + Y+ ++  FCKE   +    A  ++ EM ++G   + ++   +L G
Sbjct: 391 FYDLRRKGQLLDGIAYSIMVREFCKEGKGDQVAEAVELMKEMEERGFAVDLVTVTSLLIG 450

Query: 338 LCK 340
             K
Sbjct: 451 FNK 453



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 109/213 (51%), Gaps = 5/213 (2%)

Query: 135 DRMKELFQIMEKYVSPDACS-YNILIHGCVVSRRLEDAWKVFDEM--VKRRLQPTLVTFG 191
           D  + +F  M +   P     YNI IH     RRL+ + K+F  M      L P + T  
Sbjct: 207 DDFRHVFGEMSRRGLPSNIRFYNICIHAFGKWRRLDMSLKLFAAMKTASPPLVPDICTHN 266

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           +LI  L +  RV +AL + ++ M+ + ++PD   + +++ G C    +  AL + +EM  
Sbjct: 267 SLIRALVVGARVADALVVYDE-MKSFGIEPDVFTYRAIVDGCCKSFRMDDALRLFQEMRG 325

Query: 252 D-KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
              ++ DA +Y+SL+  LFKA + +E     + M   G + ++ T+N +I G  K    E
Sbjct: 326 SYGVKGDAVVYNSLLDGLFKAKKLDEACGFFETMVADGIQCSASTHNTVIDGLFKNGRAE 385

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           AA  +  ++  KG   + I+Y++++   CK+GK
Sbjct: 386 AACRLFYDLRRKGQLLDGIAYSIMVREFCKEGK 418



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 10/151 (6%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI----GFYGRARLLERALQM 105
           Y+ ++T   +     ++  ILH+     ++ P +I   N+I    G  G+A   E A  +
Sbjct: 613 YNSLMTSFVKKGYLKQVWAILHE--RGGQLCPNDIATYNLIIQGLGQMGKA---EVAGSI 667

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             E+S   V M +  +NTL+N     GK+D    L  QI+ + + PD  ++N LI+    
Sbjct: 668 ISELSKKGVYMDIVMYNTLINQLGKAGKVDEANSLLEQIIGRGIKPDVVTFNTLININAK 727

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
           + RL++A K   +M+   + P   T   L++
Sbjct: 728 AGRLKEADKYLRKMIAEGIAPNYATETILVF 758



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 64/114 (56%)

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   +  +I+GL  +G+  +A  +  E+ +  + MD  +Y++LI+ L KAG+ +E  ++L
Sbjct: 644 DIATYNLIIQGLGQMGKAEVAGSIISELSKKGVYMDIVMYNTLINQLGKAGKVDEANSLL 703

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +++  RG KP+ VT+N LI+   K    + A   L +M  +G   N  +  +++
Sbjct: 704 EQIIGRGIKPDVVTFNTLININAKAGRLKEADKYLRKMIAEGIAPNYATETILV 757



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 58/122 (47%)

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D  +  + +    A G+LS+A  + E       +  +  Y+SL+++  K G   +  AIL
Sbjct: 574 DADMVNTYMSIFLAKGKLSVACKLFEIFTTLGRKGTSYTYNSLMTSFVKKGYLKQVWAIL 633

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            E   + C  +  TYN +I G  +    E A +I+ E+  KG   + + YN ++  L K 
Sbjct: 634 HERGGQLCPNDIATYNLIIQGLGQMGKAEVAGSIISELSKKGVYMDIVMYNTLINQLGKA 693

Query: 342 GK 343
           GK
Sbjct: 694 GK 695



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 6/191 (3%)

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC-SYNILIHGCVVSRRLE 169
           +F+  M     NT ++  L  GKL    +LF+I           +YN L+   V    L+
Sbjct: 572 TFDADMV----NTYMSIFLAKGKLSVACKLFEIFTTLGRKGTSYTYNSLMTSFVKKGYLK 627

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
             W +  E   +     + T+  +I GL    + + A  +  ++ +   V  D  ++ +L
Sbjct: 628 QVWAILHERGGQLCPNDIATYNLIIQGLGQMGKAEVAGSIISELSK-KGVYMDIVMYNTL 686

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           I  L   G++  A  + E+++   I+ D   +++LI+   KAGR  E    L++M   G 
Sbjct: 687 INQLGKAGKVDEANSLLEQIIGRGIKPDVVTFNTLININAKAGRLKEADKYLRKMIAEGI 746

Query: 290 KPNSVTYNALI 300
            PN  T   L+
Sbjct: 747 APNYATETILV 757


>gi|242091782|ref|XP_002436381.1| hypothetical protein SORBIDRAFT_10g001520 [Sorghum bicolor]
 gi|241914604|gb|EER87748.1| hypothetical protein SORBIDRAFT_10g001520 [Sorghum bicolor]
          Length = 546

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 137/267 (51%), Gaps = 6/267 (2%)

Query: 80  VPKEIIFCNVI--GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           +   ++ CN++  G  G   L + AL++ DEM+ + +   V  + T+L      G L+  
Sbjct: 200 ITPNLVSCNILLKGLVGMGDL-DAALKVLDEMTGWGIVPDVVTYTTVLTAYCAKGDLEGA 258

Query: 138 KELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           ++LF  I+     PDA  Y +L+ G     +L+DA ++ DEM    ++P  VT+  +I  
Sbjct: 259 QQLFDDIVASGRRPDATMYTVLVDGYCHRGKLQDAARIMDEMEAAGVKPNEVTYSVVIEA 318

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
            C E +  EA  L  +++    V PD  + A ++  LC  G+   A  +  +MV+  +  
Sbjct: 319 CCKEGKSIEACDLTREMLGAGYV-PDTPLCAKVVDVLCQDGKAGEANEIWRQMVKKSVPP 377

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           D  + S+LI  L K G   E   +  E+ ERG  P+ +TYN+LI G C+  + + A  + 
Sbjct: 378 DNTVVSTLIYWLCKNGMVQEARGLFDEL-ERGFVPSLLTYNSLIIGLCENGELQEAGRVW 436

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
           D+M ++  + N ++Y  ++ G CK GK
Sbjct: 437 DDMVERRYEPNAMTYEALIKGFCKIGK 463



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 136/314 (43%), Gaps = 39/314 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+  ++++  L      D   ++L ++     IVP  + +  V+  Y     LE A Q+
Sbjct: 203 NLVSCNILLKGLVGMGDLDAALKVLDEMT-GWGIVPDVVTYTTVLTAYCAKGDLEGAQQL 261

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC-- 162
           FD++ +   +     +  L++     GKL     +   ME   V P+  +Y+++I  C  
Sbjct: 262 FDDIVASGRRPDATMYTVLVDGYCHRGKLQDAARIMDEMEAAGVKPNEVTYSVVIEACCK 321

Query: 163 ----------------------------VVSRRLED-----AWKVFDEMVKRRLQPTLVT 189
                                       VV    +D     A +++ +MVK+ + P    
Sbjct: 322 EGKSIEACDLTREMLGAGYVPDTPLCAKVVDVLCQDGKAGEANEIWRQMVKKSVPPDNTV 381

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
             TLIY LC    V EA  L +++ R +   P    + SLI GLC  GEL  A  V ++M
Sbjct: 382 VSTLIYWLCKNGMVQEARGLFDELERGF--VPSLLTYNSLIIGLCENGELQEAGRVWDDM 439

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           V  + E +A  Y +LI    K G+ NE  A+ KEM  +GC P+   Y AL+    +    
Sbjct: 440 VERRYEPNAMTYEALIKGFCKIGKSNEGYALFKEMVAKGCTPSKFLYQALVDSLSEPSHD 499

Query: 310 EAAFTILDEMGDKG 323
           +  +TI++ +   G
Sbjct: 500 DTVWTIVEAVALSG 513



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 4/197 (2%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEM-VKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           P   S+N L+H  V +RRL  A  +F     K  + P LV+   L+ GL     +D ALK
Sbjct: 166 PSTRSFNALLHSLVSARRLRLAAALFRAAPTKLYITPNLVSCNILLKGLVGMGDLDAALK 225

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           + ++ M  + + PD   + +++   CA G+L  A  + +++V      DA +Y+ L+   
Sbjct: 226 VLDE-MTGWGIVPDVVTYTTVLTAYCAKGDLEGAQQLFDDIVASGRRPDATMYTVLVDGY 284

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE-EDFEAAFTILDEMGDKGCKAN 327
              G+  +   I+ EM+  G KPN VTY+ +I   CKE +  EA     + +G       
Sbjct: 285 CHRGKLQDAARIMDEMEAAGVKPNEVTYSVVIEACCKEGKSIEACDLTREMLGAGYVPDT 344

Query: 328 PISYNVILGGLCKDGKC 344
           P+   V+   LC+DGK 
Sbjct: 345 PLCAKVV-DVLCQDGKA 360


>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 418

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 134/251 (53%), Gaps = 2/251 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y +   L    ++ + M +  VQ  V  ++ L+N      K+D    L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++K + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 289 KGDLKQAQDLIDE-MIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP   TY  +I+ FCK+ D      +L EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407

Query: 320 GDKGCKANPIS 330
              G K + ++
Sbjct: 408 QRDGYKPSVVT 418



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 125/228 (54%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++  +  G++   + +F  + K+ + P   S+N L++G +    L + +++ 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E ++D+A  L ++++    + P+G  F +LI G C 
Sbjct: 195 NAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDK-GLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+  T
Sbjct: 254 NGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGR 361



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 136/267 (50%), Gaps = 9/267 (3%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ + ++ +V  FNTL+N  +  G L+ 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M+   V PD  +Y++LI+G     +++DA  +FDEM+ + L P  VTF TLI 
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   RVD A+++ + ++   ++ PD   + +LI GLC  G+L  A  + +EM+   ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK 308

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI    K G         K M +   + + V Y ALISG C+E     A  +
Sbjct: 309 PDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
           L EM   G K    +Y +I+   CK G
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE +          ++ L+ +  K G      ++   + + G +P+ V++N L+
Sbjct: 119 LVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ K  D    F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 145/295 (49%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           +++I T   +  M DE   I +++K    + P  + F  +I    +   ++ A+  F++M
Sbjct: 381 FNIIFTAYAKKAMIDEAMHIFNKMKQQG-LSPDVVNFGALIDALCKLGRVDDAVLKFNQM 439

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIHGCVVSRRL 168
            +  V   +  FN+L+    T  K ++ KE  F+++ + + PD   +N ++       ++
Sbjct: 440 MNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQV 499

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
             A ++ D M +   +P ++++ TLI G CL  R+DEA K   D+M    +KPD   + +
Sbjct: 500 MKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAK-SLDVMLSVGLKPDEWTYNT 558

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ G C  G +  A GV  EM+R+ I      YS+++  LF   R +E   +   M   G
Sbjct: 559 LLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSG 618

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + N   YN +++G  K    + AF +   +  K  +    ++N+++G L K G+
Sbjct: 619 KQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGR 673



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 152/337 (45%), Gaps = 41/337 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT-RIVPKEII-FCNVI-GFYGRARLLERA 102
           +++ Y+ ++      K  +E  ++LH +     R  P  ++ +  VI GF+   ++ ++A
Sbjct: 164 DVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQV-DKA 222

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG 161
             +F EM    +Q  V  + T+++       +DR + +FQ M +K V PD  +YN LIHG
Sbjct: 223 YNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHG 282

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
            +   + ++  ++ +EM    L+P   T+G+L+  LC   R  EA    + ++R   +KP
Sbjct: 283 YLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIR-KGIKP 341

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS------------------- 262
           +  ++  LI G    G LS    +   MV + +  D  I++                   
Sbjct: 342 NVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIF 401

Query: 263 ----------------SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
                           +LI AL K GR ++      +M   G  PN   +N+L+ G C  
Sbjct: 402 NKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTV 461

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + +E A     EM ++G + + + +N IL  LC  G+
Sbjct: 462 DKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQ 498



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 145/305 (47%), Gaps = 5/305 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           +R N +  + ++  L  AK   E   IL +   +    P  + +  ++  +   +  E A
Sbjct: 125 WRVNNIVINQLLKGLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEA 184

Query: 103 LQMFDEMSSFNVQM---TVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNIL 158
           L++   M+    +     V  + T++N   T G++D+   LF ++M++ + P+  +Y  +
Sbjct: 185 LELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTV 244

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   ++ ++ A  VF +M+ + ++P   T+  LI+G     +  E +++ E+ M  + 
Sbjct: 245 IDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEE-MSAHG 303

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           +KPD   + SL+  LC  G    A    + M+R  I+ +  IY  LI      G  +E  
Sbjct: 304 LKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMH 363

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +L  M E G  P+   +N + + + K+   + A  I ++M  +G   + +++  ++  L
Sbjct: 364 DLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDAL 423

Query: 339 CKDGK 343
           CK G+
Sbjct: 424 CKLGR 428



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 123/273 (45%), Gaps = 12/273 (4%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           ++ P    +  +IG + R   LE     F  +     ++     N LL  K  C    R+
Sbjct: 89  KVTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLL--KGLCDA-KRL 145

Query: 138 KELFQIMEKYV-----SPDACSYNILIHGCVVSRRLEDAWKVFDEMVK---RRLQPTLVT 189
           +E   I+ K +     +PD  SYN L+ G    +R E+A ++   M     R   P +V+
Sbjct: 146 REAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVS 205

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           + T+I G   E +VD+A  L  ++M    ++P+   + ++I GLC    +  A GV ++M
Sbjct: 206 YATVINGFFTEGQVDKAYNLFLEMMD-RGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQM 264

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           +   ++ D   Y+ LI      G+  E   +L+EM   G KP+  TY +L++  C     
Sbjct: 265 IDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRC 324

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             A    D M  KG K N   Y +++ G    G
Sbjct: 325 REARFFFDSMIRKGIKPNVAIYGILIHGYATKG 357



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 139/307 (45%), Gaps = 51/307 (16%)

Query: 89  VIGFYGRARLL--ERALQMFDEMSSFNVQMTVKFFNTLLNP-KLTCGKLDRMKE------ 139
           VIG   R+  L  + AL++FD + +     ++  FN LL       G+     E      
Sbjct: 18  VIGSRARSGSLGLDDALKLFDGLLTHARPASIIAFNHLLTAVSRVSGRRSSTTESELVVS 77

Query: 140 LFQIMEKY----VSPDACSYNILI----------HG-CVVSRRLEDAWKV---------- 174
           LF  M +     V+PD C+Y+ILI          HG       L+  W+V          
Sbjct: 78  LFNRMIRECTIKVTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLK 137

Query: 175 -----------FDEMVKRRLQ----PTLVTFGTLIYGLCLELRVDEALKLKEDIM--RVY 217
                       D ++KR  +    P +V++ TL+ G C E R +EAL+L   +   +  
Sbjct: 138 GLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGR 197

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           +  P+   +A++I G    G++  A  +  EM+   I+ +   Y+++I  L KA   +  
Sbjct: 198 SCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRA 257

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + ++M ++G KP++ TYN LI G+     ++    +L+EM   G K +  +Y  +L  
Sbjct: 258 EGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNY 317

Query: 338 LCKDGKC 344
           LC +G+C
Sbjct: 318 LCNNGRC 324



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 136/286 (47%), Gaps = 19/286 (6%)

Query: 43  FRYNLLHYDL-IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLER 101
           F +N L Y L  + K  +AK F    ++L+Q      I P  + F  ++        + +
Sbjct: 449 FVFNSLVYGLCTVDKWEKAKEF--YFEMLNQ-----GIRPDVVFFNTILCNLCTKGQVMK 501

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIH 160
           A ++ D M     +  V  + TL+      G++D   +   +M    + PD  +YN L+H
Sbjct: 502 AQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLH 561

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM---RVY 217
           G   + R++DA+ VF EM++  + P +VT+ T+++GL    R  EA +L  +++   + +
Sbjct: 562 GYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQW 621

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N+     ++  ++ GL     +  A  + + +     +++   ++ +I ALFK+GR  + 
Sbjct: 622 NI----WIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDA 677

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKE---EDFEAAFTILDEMG 320
             +   +   G  P+  TY  +     +E   E+F+  F+ +++ G
Sbjct: 678 MHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSG 723


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 140/293 (47%), Gaps = 3/293 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  ++ K       D  ++   Q++ D  + P  + F  ++    +AR  + A   FD M
Sbjct: 335 YITLLDKFNDFGDLDTFKEFWSQMEADGYM-PDVVTFTILVDVLCKARDFDEAFATFDVM 393

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
               +   +  +NTL+   L  G+++   +L   ME   V P A +YNI I     S   
Sbjct: 394 RKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGET 453

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
             A + F++M  + + P +V     +Y L    R+ EA K   + +R   + PD   +  
Sbjct: 454 GKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREA-KTMFNGLRENGLAPDSVTYNM 512

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           ++K    VG++  A+ +  EM+R+  E D  + +SLI +L+KAGR +E   +   MK+  
Sbjct: 513 MMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMK 572

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             P  VTYN L+SG  KE   + A  + + M +K C  N IS+N +L   CK+
Sbjct: 573 LSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKN 625



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 130/269 (48%), Gaps = 2/269 (0%)

Query: 68   QILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127
            QI  +      I P    +  +IG        E+A  +F +M +         FN LL  
Sbjct: 773  QIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAV 832

Query: 128  KLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
                GK+  + EL+ +++ +   PDA +YNI+I     S  L+ A   F ++V    +PT
Sbjct: 833  HGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPT 892

Query: 187  LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
              T+G LI GL    R++EA++L E+ M  Y  KP+  +F  LI G   +G+   A  + 
Sbjct: 893  PRTYGPLIDGLAKVGRLEEAMRLFEE-MSDYGCKPNCAIFNILINGYGKIGDTETACQLF 951

Query: 247  EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
            + MV + I  D   Y+ L+  L  AGR +E      E+K  G  P+ + YN +I+G  K 
Sbjct: 952  KRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKS 1011

Query: 307  EDFEAAFTILDEMGDKGCKANPISYNVIL 335
            +  E A  + +EM ++G   +  +YN ++
Sbjct: 1012 QRMEEALALYNEMRNRGIVPDLYTYNSLM 1040



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 139/283 (49%), Gaps = 3/283 (1%)

Query: 50   YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
            +++++   G++    E+ ++  ++    R  P  I +  VI    ++  L++AL  F ++
Sbjct: 826  FNMLLAVHGKSGKITELFELYKEMI-SRRCKPDAITYNIVISSLAKSNNLDKALDFFYDL 884

Query: 110  SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
             S + + T + +  L++     G+L+    LF+ M  Y   P+   +NILI+G       
Sbjct: 885  VSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDT 944

Query: 169  EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            E A ++F  MV   ++P L ++  L+  LCL  RVDEAL    + ++   + PD   +  
Sbjct: 945  ETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNE-LKSTGLDPDFIAYNR 1003

Query: 229  LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
            +I GL     +  AL +  EM    I  D   Y+SL+  L  AG   +   + +E++  G
Sbjct: 1004 IINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAG 1063

Query: 289  CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
             +P+  TYNALI G+   E+ E A+T+   M   GC  N  +Y
Sbjct: 1064 LEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTY 1106



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 147/348 (42%), Gaps = 51/348 (14%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           +  LKP   +L  Y  ++  LG+ K   EM  +L +   D  + P    F   I   GRA
Sbjct: 220 SEGLKP---SLKTYSALMVALGK-KRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRA 275

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK---------Y 147
             ++ A ++F  M        +  +  L++     G+L+  KELF  M+          Y
Sbjct: 276 GKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIY 335

Query: 148 VS---------------------------PDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           ++                           PD  ++ IL+     +R  ++A+  FD M K
Sbjct: 336 ITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRK 395

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           + + P L T+ TLI GL    R+++ALKL    M    V+P    +   I      GE  
Sbjct: 396 QGILPNLHTYNTLICGLLRAGRIEDALKLL-GTMESVGVQPTAYTYNIFIDYFGKSGETG 454

Query: 241 LALGVKEEM-----VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            A+   E+M     V + +  +A +YS     L + GR  E   +   ++E G  P+SVT
Sbjct: 455 KAVETFEKMKAKGIVPNIVACNASLYS-----LAEMGRLREAKTMFNGLRENGLAPDSVT 509

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           YN ++  + K    + A  +L EM   GC+ + I  N ++  L K G+
Sbjct: 510 YNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGR 557



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 119/254 (46%), Gaps = 5/254 (1%)

Query: 48   LHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQMF 106
            + Y+++I+ L ++   D+     + L   D R  P+   +  +I    +   LE A+++F
Sbjct: 859  ITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPR--TYGPLIDGLAKVGRLEEAMRLF 916

Query: 107  DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVS 165
            +EMS +  +     FN L+N     G  +   +LF+ M  + + PD  SY IL+    ++
Sbjct: 917  EEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLA 976

Query: 166  RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             R+++A   F+E+    L P  + +  +I GL    R++EAL L  + MR   + PD   
Sbjct: 977  GRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNE-MRNRGIVPDLYT 1035

Query: 226  FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
            + SL+  L   G +  A  + EE+    +E D   Y++LI     +        + K M 
Sbjct: 1036 YNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMM 1095

Query: 286  ERGCKPNSVTYNAL 299
              GC PN  TY  L
Sbjct: 1096 VDGCNPNIGTYAQL 1109



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 140/299 (46%), Gaps = 4/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL  Y+ +I  L RA   ++  ++L  ++    + P    +   I ++G++    +A++ 
Sbjct: 401 NLHTYNTLICGLLRAGRIEDALKLLGTME-SVGVQPTAYTYNIFIDYFGKSGETGKAVET 459

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           F++M +  +   +   N  L      G+L   K +F  + E  ++PD+ +YN+++     
Sbjct: 460 FEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSK 519

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             ++++A  +  EM++   +P ++   +LI  L    RVDEA ++  D M+   + P   
Sbjct: 520 VGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMF-DRMKDMKLSPTVV 578

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +L+ GL   G +  A+ + E M+  K   +   +++L+    K         +  +M
Sbjct: 579 TYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKM 638

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               CKP+ +TYN +I G  KE     AF    ++  K    + ++   +L GL K G+
Sbjct: 639 TVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQL-KKSMHPDHVTICTLLPGLVKCGQ 696



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 94/209 (44%), Gaps = 8/209 (3%)

Query: 141 FQIMEKY-----VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
           +QI +K+     +SP   SYN LI   +     E AW +F +M      P   TF  L+ 
Sbjct: 772 YQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLA 831

Query: 196 GLCLELRVDEALKL-KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
                 ++ E  +L KE I R    KPD   +  +I  L     L  AL    ++V    
Sbjct: 832 VHGKSGKITELFELYKEMISR--RCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDF 889

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
                 Y  LI  L K GR  E   + +EM + GCKPN   +N LI+G+ K  D E A  
Sbjct: 890 RPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQ 949

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +   M ++G + +  SY +++  LC  G+
Sbjct: 950 LFKRMVNEGIRPDLKSYTILVDCLCLAGR 978



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/363 (21%), Positives = 147/363 (40%), Gaps = 74/363 (20%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           +I  L +A   DE  Q+  ++K D ++ P  + +  ++   G+   +++A+++F+ M   
Sbjct: 548 LIDSLYKAGRVDEAWQMFDRMK-DMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEK 606

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDA 171
                   FNTLL+      +++   ++F  M      PD  +YN +I+G +   ++  A
Sbjct: 607 KCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHA 666

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLC--------------------------------- 198
           +  F ++ K+ + P  VT  TL+ GL                                  
Sbjct: 667 FWFFHQL-KKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMG 725

Query: 199 ---LELRVDEALKLKEDIMRVYNVKPDG-------------------QVFASLIKGL--- 233
              +E  +D+A+   E+++     + D                    Q+F    K L   
Sbjct: 726 GTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGIS 785

Query: 234 -------CAVGEL------SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
                  C +GEL        A  + ++M       DA  ++ L++   K+G+  E   +
Sbjct: 786 PTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFEL 845

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            KEM  R CKP+++TYN +IS   K  + + A     ++     +  P +Y  ++ GL K
Sbjct: 846 YKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAK 905

Query: 341 DGK 343
            G+
Sbjct: 906 VGR 908



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 104/248 (41%), Gaps = 37/248 (14%)

Query: 132 GKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           G L +M  +   M K     +A SYN LIH  + S    +A +V+  MV   L+P+L T+
Sbjct: 171 GGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTY 230

Query: 191 GTLI------------------------------YGLCLEL-----RVDEALKLKEDIMR 215
             L+                              + +C+ +     ++DEA ++    M 
Sbjct: 231 SALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRR-MD 289

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
                PD   +  LI  LC  G+L  A  +  +M  +  + D  IY +L+      G  +
Sbjct: 290 DEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLD 349

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
            F     +M+  G  P+ VT+  L+   CK  DF+ AF   D M  +G   N  +YN ++
Sbjct: 350 TFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLI 409

Query: 336 GGLCKDGK 343
            GL + G+
Sbjct: 410 CGLLRAGR 417



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 1/188 (0%)

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N ++    V  ++ED   VF+ M K+ ++  L T+ T+   L +   + +   +    MR
Sbjct: 126 NFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNK-MR 184

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
                 +   +  LI  L   G    AL V   MV + ++     YS+L+ AL K     
Sbjct: 185 KAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSE 244

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
               +LKEM++ G +PN  T+   I    +    + A+ I   M D+GC  + ++Y V++
Sbjct: 245 MVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLI 304

Query: 336 GGLCKDGK 343
             LC  G+
Sbjct: 305 DALCNAGQ 312


>gi|13324802|gb|AAK18850.1|AC082645_20 unknown protein [Oryza sativa Japonica Group]
          Length = 825

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 126/243 (51%), Gaps = 6/243 (2%)

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY---VSPDACSYNILIH 160
            +F EMS   +   ++F+N  ++      +LD   +LF  M+     + PD C++N LI 
Sbjct: 211 HVFGEMSRRGLPSNIRFYNICIHAFGKWRRLDMSLKLFAAMKTASPPLVPDICTHNSLIR 270

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
             VV  R+ DA  V+DEM    ++P + T+  ++ G C   R+D+AL+L +++   Y VK
Sbjct: 271 ALVVGARVADALVVYDEMKSFGIEPDVFTYRAIVDGCCKSFRMDDALRLFQEMRGSYGVK 330

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
            D  V+ SL+ GL    +L  A G  E MV D I+  A  ++++I  LFK GR      +
Sbjct: 331 GDAVVYNSLLDGLFKAKKLDEACGFFETMVADGIQCSASTHNTVIDGLFKNGRAEAACRL 390

Query: 281 LKEMKERGCKPNSVTYNALISGFCKE---EDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +++ +G   + + Y+ ++  FCKE   +    A  ++ EM ++G   + ++   +L G
Sbjct: 391 FYDLRRKGQLLDGIAYSIMVREFCKEGKGDQVAEAVELMKEMEERGFAVDLVTVTSLLIG 450

Query: 338 LCK 340
             K
Sbjct: 451 FNK 453



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 109/213 (51%), Gaps = 5/213 (2%)

Query: 135 DRMKELFQIMEKYVSPDACS-YNILIHGCVVSRRLEDAWKVFDEM--VKRRLQPTLVTFG 191
           D  + +F  M +   P     YNI IH     RRL+ + K+F  M      L P + T  
Sbjct: 207 DDFRHVFGEMSRRGLPSNIRFYNICIHAFGKWRRLDMSLKLFAAMKTASPPLVPDICTHN 266

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           +LI  L +  RV +AL + ++ M+ + ++PD   + +++ G C    +  AL + +EM  
Sbjct: 267 SLIRALVVGARVADALVVYDE-MKSFGIEPDVFTYRAIVDGCCKSFRMDDALRLFQEMRG 325

Query: 252 D-KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
              ++ DA +Y+SL+  LFKA + +E     + M   G + ++ T+N +I G  K    E
Sbjct: 326 SYGVKGDAVVYNSLLDGLFKAKKLDEACGFFETMVADGIQCSASTHNTVIDGLFKNGRAE 385

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           AA  +  ++  KG   + I+Y++++   CK+GK
Sbjct: 386 AACRLFYDLRRKGQLLDGIAYSIMVREFCKEGK 418



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 10/167 (5%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI----GFYGRARLLERALQM 105
           Y+ ++T   +     ++  ILH+     ++ P +I   N+I    G  G+A   E A  +
Sbjct: 613 YNSLMTSFVKKGYLKQVWAILHE--RGGQLCPNDIATYNLIIQGLGQMGKA---EVAGSI 667

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             E+S   V M +  +NTL+N     GK+D    L  QI+ + + PD  ++N LI+    
Sbjct: 668 ISELSKKGVYMDIVMYNTLINQLGKAGKVDEANSLLEQIIGRGIKPDVVTFNTLININAK 727

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
           + RL++A K   +M+   + P   T   L+  + +EL  D   KL E
Sbjct: 728 AGRLKEADKYLRKMIAEGIAPNYATETILLIRMIVELIDDCIEKLGE 774



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 64/114 (56%)

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   +  +I+GL  +G+  +A  +  E+ +  + MD  +Y++LI+ L KAG+ +E  ++L
Sbjct: 644 DIATYNLIIQGLGQMGKAEVAGSIISELSKKGVYMDIVMYNTLINQLGKAGKVDEANSLL 703

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +++  RG KP+ VT+N LI+   K    + A   L +M  +G   N  +  ++L
Sbjct: 704 EQIIGRGIKPDVVTFNTLININAKAGRLKEADKYLRKMIAEGIAPNYATETILL 757



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 58/122 (47%)

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D  +  + +    A G+LS+A  + E       +  +  Y+SL+++  K G   +  AIL
Sbjct: 574 DADMVNTYMSIFLAKGKLSVACKLFEIFTTLGRKGTSYTYNSLMTSFVKKGYLKQVWAIL 633

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            E   + C  +  TYN +I G  +    E A +I+ E+  KG   + + YN ++  L K 
Sbjct: 634 HERGGQLCPNDIATYNLIIQGLGQMGKAEVAGSIISELSKKGVYMDIVMYNTLINQLGKA 693

Query: 342 GK 343
           GK
Sbjct: 694 GK 695



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 6/191 (3%)

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC-SYNILIHGCVVSRRLE 169
           +F+  M     NT ++  L  GKL    +LF+I           +YN L+   V    L+
Sbjct: 572 TFDADMV----NTYMSIFLAKGKLSVACKLFEIFTTLGRKGTSYTYNSLMTSFVKKGYLK 627

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
             W +  E   +     + T+  +I GL    + + A  +  ++ +   V  D  ++ +L
Sbjct: 628 QVWAILHERGGQLCPNDIATYNLIIQGLGQMGKAEVAGSIISELSK-KGVYMDIVMYNTL 686

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           I  L   G++  A  + E+++   I+ D   +++LI+   KAGR  E    L++M   G 
Sbjct: 687 INQLGKAGKVDEANSLLEQIIGRGIKPDVVTFNTLININAKAGRLKEADKYLRKMIAEGI 746

Query: 290 KPNSVTYNALI 300
            PN  T   L+
Sbjct: 747 APNYATETILL 757


>gi|255661028|gb|ACU25683.1| pentatricopeptide repeat-containing protein [Citharexylum
           montevidense]
          Length = 376

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 131/245 (53%), Gaps = 1/245 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL 158
           +  A +++ EM+   +      +N +LN     G++    +L+++M +  S +  S+N +
Sbjct: 6   INAAERVYKEMAESKISPDAVVYNAMLNGFFKAGRIKNCFDLWELMGREGSRNVASFNTM 65

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           + G   +  +++ + +++ M +        T+G L++G C     +++L + E I +   
Sbjct: 66  MRGLFNNGEVDEVFSIWELMKESGFVEDSTTYGILVHGFCKNGYNNKSLHVLE-IAKQEG 124

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
              D   ++++I GLC +G+L  A+ V   M+    + +  +Y++LI+ L  A +  +  
Sbjct: 125 GALDAFAYSAMISGLCKMGKLDKAVSVLNGMIESGCKPNTQVYNALINGLLGASKFEDAI 184

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            + KE+  R C P  VTYN LI+G CK E F  A+ ++ EM +KG   + I+Y++++ GL
Sbjct: 185 RVFKELGTRHCSPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKGWNPSVITYSLLIKGL 244

Query: 339 CKDGK 343
           C+D K
Sbjct: 245 CQDHK 249



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/210 (34%), Positives = 109/210 (51%), Gaps = 4/210 (1%)

Query: 132 GKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           GKLD+   +   ++E    P+   YN LI+G + + + EDA +VF E+  R   PT+VT+
Sbjct: 143 GKLDKAVSVLNGMIESGCKPNTQVYNALINGLLGASKFEDAIRVFKELGTRHCSPTIVTY 202

Query: 191 GTLIYGLCLELRVDEALKL-KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
            TLI GLC   R  EA  L KE + + +N  P    ++ LIKGLC   ++ +AL +  ++
Sbjct: 203 NTLINGLCKGERFAEAYDLVKEMLEKGWN--PSVITYSLLIKGLCQDHKVEMALQLWNQV 260

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           +    + D  +++ LI  L   G+      +  +M    C PN VTYN L+ GF K  D 
Sbjct: 261 ISKGFKPDVQMHNILIHGLCSVGKTEHASELYFDMNHWNCAPNLVTYNTLMEGFYKGGDT 320

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLC 339
             A  I   +   G   + ISYN+ L GLC
Sbjct: 321 RNALVIWARILRNGLLPDIISYNITLKGLC 350



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 134/269 (49%), Gaps = 3/269 (1%)

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           +++I P  +++  ++  + +A  ++    +++ M     +  V  FNT++      G++D
Sbjct: 18  ESKISPDAVVYNAMLNGFFKAGRIKNCFDLWELMGREGSR-NVASFNTMMRGLFNNGEVD 76

Query: 136 RMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
            +  ++++M E     D+ +Y IL+HG   +     +  V +   +         +  +I
Sbjct: 77  EVFSIWELMKESGFVEDSTTYGILVHGFCKNGYNNKSLHVLEIAKQEGGALDAFAYSAMI 136

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
            GLC   ++D+A+ +   ++     KP+ QV+ +LI GL    +   A+ V +E+     
Sbjct: 137 SGLCKMGKLDKAVSVLNGMIES-GCKPNTQVYNALINGLLGASKFEDAIRVFKELGTRHC 195

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
                 Y++LI+ L K  R  E   ++KEM E+G  P+ +TY+ LI G C++   E A  
Sbjct: 196 SPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKGWNPSVITYSLLIKGLCQDHKVEMALQ 255

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + +++  KG K +   +N+++ GLC  GK
Sbjct: 256 LWNQVISKGFKPDVQMHNILIHGLCSVGK 284



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 107/221 (48%), Gaps = 2/221 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           L++A+ + + M     +   + +N L+N  L   K +    +F ++  ++ SP   +YN 
Sbjct: 145 LDKAVSVLNGMIESGCKPNTQVYNALINGLLGASKFEDAIRVFKELGTRHCSPTIVTYNT 204

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G     R  +A+ +  EM+++   P+++T+  LI GLC + +V+ AL+L   ++   
Sbjct: 205 LINGLCKGERFAEAYDLVKEMLEKGWNPSVITYSLLIKGLCQDHKVEMALQLWNQVIS-K 263

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             KPD Q+   LI GLC+VG+   A  +  +M       +   Y++L+   +K G     
Sbjct: 264 GFKPDVQMHNILIHGLCSVGKTEHASELYFDMNHWNCAPNLVTYNTLMEGFYKGGDTRNA 323

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             I   +   G  P+ ++YN  + G C       A   L++
Sbjct: 324 LVIWARILRNGLLPDIISYNITLKGLCACNRISVAILFLND 364



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%)

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR-KNEFPAILKEMKERGCKPN 292
           C  G ++ A  V +EM   KI  DA +Y+++++  FKAGR KN F   L E+  R    N
Sbjct: 1   CESGAINAAERVYKEMAESKISPDAVVYNAMLNGFFKAGRIKNCFD--LWELMGREGSRN 58

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             ++N ++ G     + +  F+I + M + G   +  +Y +++ G CK+G
Sbjct: 59  VASFNTMMRGLFNNGEVDEVFSIWELMKESGFVEDSTTYGILVHGFCKNG 108



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           ++G  N    + KEM E    P++V YNA+++GF K    +  F + + MG +G + N  
Sbjct: 2   ESGAINAAERVYKEMAESKISPDAVVYNAMLNGFFKAGRIKNCFDLWELMGREGSR-NVA 60

Query: 330 SYNVILGGLCKDGK 343
           S+N ++ GL  +G+
Sbjct: 61  SFNTMMRGLFNNGE 74


>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
 gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
          Length = 495

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 163/367 (44%), Gaps = 50/367 (13%)

Query: 16  KDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 75
           K PKLA ++FK          A   + F++ +  Y+  +  L +     + ++I   + +
Sbjct: 15  KSPKLASRVFK---------WAARQEDFQHTVFTYNAYLNALVKGGHGSKARKIFDDMLY 65

Query: 76  DTRIVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
               +P    +  V+ G    A+  + AL++  +M S  +  T    N L++     GK+
Sbjct: 66  K-ECLPNIYTYGIVLRGLCDDAKT-DAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKV 123

Query: 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           D   EL++ +    S D  SYN+L +G   + +++ A  VF EM +  + P+L+T+  L+
Sbjct: 124 DAAYELYKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLL 183

Query: 195 YGLCLELRVDEALKLKEDI------------MRVYNV----------------------- 219
           YG C   R+++A+ L E++            M  YN                        
Sbjct: 184 YGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIK 243

Query: 220 ---KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
               P+   F +L+ GLC  G+L  A  + E MV    E  A  Y+ LI+   +A R ++
Sbjct: 244 SGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDK 303

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
                 +M  RG +PN  TY ALI G C     E A  IL  M   G + N ++Y  ++G
Sbjct: 304 ANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIG 363

Query: 337 GLCKDGK 343
            LCK G+
Sbjct: 364 ALCKGGQ 370



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 125/261 (47%), Gaps = 11/261 (4%)

Query: 93  YG--RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-----E 145
           YG  +A  ++RAL +F EM    V  ++  +N LL      G++++   L + M      
Sbjct: 149 YGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKG 208

Query: 146 KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
             V PD  SYN +I G   +R+L  A  V   M+K    P +VTF TL+ GLCL  ++DE
Sbjct: 209 SDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDE 268

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           A  + E  M   N +P    +  LI G      +  A     +M+R  +E +   Y++LI
Sbjct: 269 ANAMFE-YMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALI 327

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL-DEMGDKG- 323
             L  A +  +   ILK M   G +PN VTY  +I   CK    E A  +  D MG +  
Sbjct: 328 GGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTA 387

Query: 324 -CKANPISYNVILGGLCKDGK 343
            CK +  +Y+ I+  LC+  K
Sbjct: 388 KCKPDSYAYSTIVYWLCRQSK 408



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 146/299 (48%), Gaps = 10/299 (3%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           + Y+++   L +A   D    +  +++ +  +VP  + +  ++  Y RA  +E+A+ + +
Sbjct: 142 ISYNMLTYGLCKADQIDRALAVFGEMEENA-VVPSLLTYNGLLYGYCRAGRMEQAMTLLE 200

Query: 108 EM----SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
           EM       +V   +  +NT+++      +L   + + + M K   SP+  ++N L+ G 
Sbjct: 201 EMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGL 260

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
            ++ +L++A  +F+ MV+R  +PT VT+  LI G    LR+D+A     D++R   V+P+
Sbjct: 261 CLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLR-RGVEPN 319

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + +LI GLC   ++  AL + + M     E +   Y+ +I AL K G+      +  
Sbjct: 320 VYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFN 379

Query: 283 EM---KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           +    +   CKP+S  Y+ ++   C++  F  A+     M +    A P  Y  +  GL
Sbjct: 380 DAMGSRTAKCKPDSYAYSTIVYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMADGL 438


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 155/300 (51%), Gaps = 13/300 (4%)

Query: 50   YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
            Y+ +I  L RA ++ E+   L+ L  D    P    F  +I    +   +  A Q+ + M
Sbjct: 1158 YNSLIHGLSRAGLWKEVTWFLN-LMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELM 1216

Query: 110  SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRL 168
                 +  +  +NTL+N     G+L+   +LF+ + ++ +  +  SYNILI+G    +++
Sbjct: 1217 RHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKI 1276

Query: 169  EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ---- 224
            ++A++ F+EM  + L+P+ VT+ TLI  LC   RV  A KL         ++  GQ    
Sbjct: 1277 DEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKL------FVEMQTCGQFLKL 1330

Query: 225  -VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
              +  L+ GLC  G L  A+ + + + + + + +  ++S L+  + +AG+  E      E
Sbjct: 1331 STYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDE 1390

Query: 284  MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + + G +P+++ YN LI+G C +     A  +L +M +KGC  + I++NVI+  L K+ +
Sbjct: 1391 ISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENE 1450



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/242 (33%), Positives = 124/242 (51%), Gaps = 2/242 (0%)

Query: 102  ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIH 160
            AL MF EM    +   V  +++L++     G+L    E F+ ME + +S D  +YN LIH
Sbjct: 1104 ALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIH 1163

Query: 161  GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
            G   +   ++     + MV R   P   TF  LI GLC E +V EA ++ E +MR    +
Sbjct: 1164 GLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILE-LMRHKGKE 1222

Query: 221  PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
            PD   + +L+ GLC VG+L  A  + E +    I+++   Y+ LI+   K  + +E    
Sbjct: 1223 PDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRF 1282

Query: 281  LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             +EM+ +G KP++VTYN LI   C+      A  +  EM   G      +Y V+L GLCK
Sbjct: 1283 FEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCK 1342

Query: 341  DG 342
            +G
Sbjct: 1343 NG 1344



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 116/242 (47%), Gaps = 1/242 (0%)

Query: 102  ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161
            A+Q+FDEM+   +    K +  L+N      K     +L + M+     D  +Y ++I  
Sbjct: 1035 AVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDA 1094

Query: 162  CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                    +A  +F EM+   + P +V + +L+ GLC   R+ EAL+  ++ M    +  
Sbjct: 1095 LCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKE-MEGRGISA 1153

Query: 222  DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
            D   + SLI GL   G           MV      DA  ++ LI  L K G+  E   IL
Sbjct: 1154 DVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQIL 1213

Query: 282  KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            + M+ +G +P+ +TYN L++G C     E A  + + + D+G K N  SYN+++ G CKD
Sbjct: 1214 ELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKD 1273

Query: 342  GK 343
             K
Sbjct: 1274 QK 1275



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 103/200 (51%), Gaps = 2/200 (1%)

Query: 144  MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
            +++   PDA +   L+ G  +   + DA ++FDEM K+ L     T+G LI GLC   + 
Sbjct: 1008 LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKT 1067

Query: 204  DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
              A+KL E +    N K D   +  +I  LC  G  + AL +  EM+   I  D  +YSS
Sbjct: 1068 GLAIKLHEKMKG--NCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSS 1125

Query: 264  LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
            L+  L + GR  E     KEM+ RG   +  TYN+LI G  +   ++     L+ M D+G
Sbjct: 1126 LMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRG 1185

Query: 324  CKANPISYNVILGGLCKDGK 343
               +  ++ +++ GLCK+GK
Sbjct: 1186 FSPDAFTFTILIDGLCKEGK 1205



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 128/318 (40%), Gaps = 73/318 (22%)

Query: 41   KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
            + F  +   + ++I  L +     E QQIL  ++H  +  P  + +  ++        LE
Sbjct: 1184 RGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGK-EPDILTYNTLMNGLCLVGQLE 1242

Query: 101  RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
             A ++F+ ++   +++ V  +N L+N      K+D     F+ M  K + P   +YN LI
Sbjct: 1243 DATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLI 1302

Query: 160  HGCVVSRRLEDAWKVFDEMV-----------------------------------KRRLQ 184
                 S R+  A K+F EM                                    K   +
Sbjct: 1303 GALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHK 1362

Query: 185  PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
            P +  F  L+ G+C   +++EA K  ++I +   ++PD   +  LI GLC  G LS A+ 
Sbjct: 1363 PNIEVFSILLDGMCRAGKLEEAWKQFDEISK-NGLEPDTIAYNILINGLCNKGMLSEAV- 1420

Query: 245  VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
                                               +L +M+E+GC P+S+T+N +I    
Sbjct: 1421 ----------------------------------KLLWQMEEKGCLPDSITFNVIIQNLL 1446

Query: 305  KEEDFEAAFTILDEMGDK 322
            KE +   A  +L+EM ++
Sbjct: 1447 KENEIHEAIQLLEEMRNR 1464



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 90/234 (38%), Gaps = 46/234 (19%)

Query: 145  EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE--------------------------- 177
            E+YV  D C + I+        +L DA K+FD                            
Sbjct: 913  ERYVR-DQCRFGII--------KLNDAIKLFDRSLCSEPMPCTDTFNHLLASVAKLGYYS 963

Query: 178  ----MVKR----RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
                M ++     +QP L T   LI+  C  LR                 +PD     +L
Sbjct: 964  TVFPMYRKINDVGIQPDLYTLNILIH-CCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTL 1022

Query: 230  IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
            +KG+     +  A+ + +EM +  +  DA  Y  LI+ L KA RK      L E  +  C
Sbjct: 1023 VKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKA-RKTGLAIKLHEKMKGNC 1081

Query: 290  KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            K +  TY  +I   CK+     A  +  EM   G   + + Y+ ++ GLC+ G+
Sbjct: 1082 KGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGR 1135


>gi|297834132|ref|XP_002884948.1| hypothetical protein ARALYDRAFT_478692 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330788|gb|EFH61207.1| hypothetical protein ARALYDRAFT_478692 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 394

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 155/307 (50%), Gaps = 13/307 (4%)

Query: 15  QKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 74
           ++DPK  ++ FK         +A   + FR N+  Y+  + +L  AK F+ +++IL + +
Sbjct: 48  ERDPKFIMEKFK---------KACQAEWFRKNIAVYEKTVRRLAAAKKFEWVEEILEE-Q 97

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           +    + KE     +I  YGR  + E A ++FDEM   N + TV  FN LLN  +   K 
Sbjct: 98  NKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMPERNCKRTVLSFNALLNACVNSKKF 157

Query: 135 DRMKELFQIMEKYVS--PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           D ++ +F+ +   +S  PD  SYN LI G        +A  + DE+  + L+P  +TF  
Sbjct: 158 DLVESIFKELPGKISIEPDVASYNTLIKGLCGKGSFTEAVALIDEIENKGLKPDHITFNI 217

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           L++    + + +E  K+   ++    VK D + + + + GL    +    + + +E+  +
Sbjct: 218 LLHESYTKGKFEEGEKIWARMVE-KKVKRDIRSYNARLLGLAMEKKSEEMVSLFDELKVN 276

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
           +++ D   ++++I      GR +E     KE+++ GC+P    +N+L+   CK  D E+A
Sbjct: 277 ELKPDVFTFTAMIKGFAGEGRLDEAITWYKEIEKNGCRPMKFVFNSLLPAICKACDLESA 336

Query: 313 FTILDEM 319
           + +  E+
Sbjct: 337 YELCKEI 343



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 89/208 (42%), Gaps = 35/208 (16%)

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
            E+A KVFDEM +R  + T+++F  L+       + D    + +++    +++PD   + 
Sbjct: 122 FENAQKVFDEMPERNCKRTVLSFNALLNACVNSKKFDLVESIFKELPGKISIEPDVASYN 181

Query: 228 SLIKGLCAVGELSLALGVKEE-----------------------------------MVRD 252
           +LIKGLC  G  + A+ + +E                                   MV  
Sbjct: 182 TLIKGLCGKGSFTEAVALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEKIWARMVEK 241

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
           K++ D   Y++ +  L    +  E  ++  E+K    KP+  T+ A+I GF  E   + A
Sbjct: 242 KVKRDIRSYNARLLGLAMEKKSEEMVSLFDELKVNELKPDVFTFTAMIKGFAGEGRLDEA 301

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCK 340
            T   E+   GC+     +N +L  +CK
Sbjct: 302 ITWYKEIEKNGCRPMKFVFNSLLPAICK 329


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 119/223 (53%), Gaps = 2/223 (0%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           ++T++N     G+LD++ +L ++M+ K + P++  Y  +I       +L +A + F EM+
Sbjct: 284 YSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMI 343

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           ++ + P  V + TLI G C    +  A K   + M   ++ PD   + ++I G C +G++
Sbjct: 344 RQGILPDTVVYTTLIDGFCKRGDIRAASKFFYE-MHSRDITPDVLTYTAIISGFCQIGDM 402

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A  +  EM    +E D+  ++ LI+   KAG   +   +   M + GC PN VTY  L
Sbjct: 403 VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 462

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           I G CKE D ++A  +L EM   G + N  +YN I+ GLCK G
Sbjct: 463 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSG 505



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 151/314 (48%), Gaps = 9/314 (2%)

Query: 36  EAH------PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNV 89
           EAH       LK +  +++ Y  ++    R    D++ +++  +K    + P   I+ ++
Sbjct: 264 EAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG-LKPNSYIYGSI 322

Query: 90  IGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYV 148
           IG   R   L  A + F EM    +      + TL++     G +    + F ++  + +
Sbjct: 323 IGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDI 382

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           +PD  +Y  +I G      + +A K+F EM  + L+P  VTF  LI G C    + +A +
Sbjct: 383 TPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFR 442

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           +   +++     P+   + +LI GLC  G+L  A  +  EM +  ++ +   Y+S+++ L
Sbjct: 443 VHNHMIQA-GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGL 501

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K+G   E   ++ E +  G   ++VTY  L+  +CK  + + A  IL EM  KG +   
Sbjct: 502 CKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTI 561

Query: 329 ISYNVILGGLCKDG 342
           +++NV++ G C  G
Sbjct: 562 VTFNVLMNGFCLHG 575



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 151/301 (50%), Gaps = 6/301 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP  Y    Y  II  L R     E ++   ++     I+P  +++  +I  + +   +
Sbjct: 312 LKPNSY---IYGSIIGLLCRICKLAEAEEAFSEMIRQG-ILPDTVVYTTLIDGFCKRGDI 367

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNIL 158
             A + F EM S ++   V  +  +++     G +    +LF  M  K + PD+ ++  L
Sbjct: 368 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 427

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G   +  ++DA++V + M++    P +VT+ TLI GLC E  +D A +L  ++ ++  
Sbjct: 428 INGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI-G 486

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           ++P+   + S++ GLC  G +  A+ +  E     +  D   Y++L+ A  K+G  ++  
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 546

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            ILKEM  +G +P  VT+N L++GFC     E    +L+ M  KG   N  ++N ++   
Sbjct: 547 EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 606

Query: 339 C 339
           C
Sbjct: 607 C 607



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 143/303 (47%), Gaps = 9/303 (2%)

Query: 45  YNLLHYDLII---TKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLER 101
           +N+  Y+++I    +LGR K    +  +L +LK  T   P  I +  V+  Y R   L++
Sbjct: 244 WNVASYNIVIHFVCQLGRIKEAHHLL-LLMELKGYT---PDVISYSTVVNGYCRFGELDK 299

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
             ++ + M    ++     + +++       KL   +E F +++ + + PD   Y  LI 
Sbjct: 300 VWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLID 359

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G      +  A K F EM  R + P ++T+  +I G C    + EA KL  + M    ++
Sbjct: 360 GFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE-MFCKGLE 418

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   F  LI G C  G +  A  V   M++     +   Y++LI  L K G  +    +
Sbjct: 419 PDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANEL 478

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L EM + G +PN  TYN++++G CK  + E A  ++ E    G  A+ ++Y  ++   CK
Sbjct: 479 LHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 538

Query: 341 DGK 343
            G+
Sbjct: 539 SGE 541



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 2/248 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  +I    +   L+ A ++  EM    +Q  +  +N+++N     G ++   +L
Sbjct: 454 PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL 513

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
               E   ++ D  +Y  L+     S  ++ A ++  EM+ + LQPT+VTF  L+ G CL
Sbjct: 514 VGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCL 573

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
              +++  KL  + M    + P+   F SL+K  C    L  A  + ++M    +  D  
Sbjct: 574 HGMLEDGEKLL-NWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGK 632

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y +L+    KA    E   + +EMK +G   +  TY+ LI GF K + F  A  + D+M
Sbjct: 633 TYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQM 692

Query: 320 GDKGCKAN 327
             +G  A+
Sbjct: 693 RREGLAAD 700



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 135/299 (45%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++L Y  II+   +     E  ++ H++     + P  + F  +I  Y +A  ++ A ++
Sbjct: 385 DVLTYTAIISGFCQIGDMVEAGKLFHEM-FCKGLEPDSVTFTELINGYCKAGHMKDAFRV 443

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            + M        V  + TL++     G LD   EL   M K  + P+  +YN +++G   
Sbjct: 444 HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCK 503

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S  +E+A K+  E     L    VT+ TL+   C    +D+A ++ ++++    ++P   
Sbjct: 504 SGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLG-KGLQPTIV 562

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F  L+ G C  G L     +   M+   I  +A  ++SL+             AI K+M
Sbjct: 563 TFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDM 622

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             RG  P+  TY  L+ G CK  + + A+ +  EM  KG   +  +Y+V++ G  K  K
Sbjct: 623 CSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKK 681


>gi|255660868|gb|ACU25603.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 484

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 166/325 (51%), Gaps = 15/325 (4%)

Query: 31  NPNDTEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVP 81
           + + T  H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +  
Sbjct: 20  HSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEW 78

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
            E ++  +I  YG+  +++ +++MF +M    V+ T+K +N L    L  G+    K  F
Sbjct: 79  DEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYF 138

Query: 142 -QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
            +++ + + P   ++N++I G  +S ++E A + F++M  R + P +VT+ T+I G    
Sbjct: 139 NKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRV 198

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            +++EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  
Sbjct: 199 KKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAIT 257

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDE 318
           YS+L+  L  A + +E   ILKEM ++   P  NS+ +  LIS  CK  + +AA  +L  
Sbjct: 258 YSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSI-FMRLISSHCKSGNLDAAADVLKA 316

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M           Y +++   CK G+
Sbjct: 317 MIRLSVPTEAGHYGLLIENFCKAGQ 341



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 130/263 (49%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F++M S  +   V  +NT++N      K++  ++ F  M+ + 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   +++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + +++M  Y    D  +F  LI   C  G L  A  V + M+R  +  +AG Y  LI  
Sbjct: 276 VILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGLLIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             KAG+ ++   +L ++ E+    +P S        YN +I   C       A T++ ++
Sbjct: 336 FCKAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQASKAETLVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +P + N ++ G  ++G
Sbjct: 396 MKLGVQ-DPTALNTLIRGHSQEG 417



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 134/297 (45%), Gaps = 18/297 (6%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D ++  + P   +++ Y+ +I    R K  +E ++   ++K    I P  + +  +I  Y
Sbjct: 175 DMKSREISP---DVVTYNTMINGYYRVKKMEEAEKYFVEMK-GRNIEPTVVTYTTLIKGY 230

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSP-D 151
                ++ AL++ +EM  F ++     ++TLL       K+   + +  ++M+KY++P D
Sbjct: 231 VSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-- 209
              +  LI     S  L+ A  V   M++  +      +G LI   C   + D+A+KL  
Sbjct: 291 NSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGLLIENFCKAGQYDKAVKLLD 350

Query: 210 ----KEDIMR---VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
               K+ I+R     +++P    +  +I+ LC  G+ S A  +  ++++  ++ D    +
Sbjct: 351 KLIEKDIILRPQSTLHLEPSA--YNPMIEYLCNNGQASKAETLVRQLMKLGVQ-DPTALN 407

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           +LI    + G  +    +LK M  R        YN L+  + K+ +   A   LD M
Sbjct: 408 TLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYNLLVQSYLKKNEPXDAKAALDSM 464


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 156/340 (45%), Gaps = 37/340 (10%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           PL   R N   Y ++I  L  A+   E   ++  + HD   +        + G     R+
Sbjct: 241 PLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRI 300

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
            + A  + DEM    V  +V  +N +++     G++     +  +ME+   +PD  +YN 
Sbjct: 301 HD-ARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNS 359

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI---- 213
           LI+G +   +L++A ++ +  + R   PT++TF  LI G C   R+D+AL++K ++    
Sbjct: 360 LIYG-LCGGKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSN 418

Query: 214 ----MRVYNV--------------------------KPDGQVFASLIKGLCAVGELSLAL 243
               ++ Y V                           P+   + S+I G C VG +  AL
Sbjct: 419 CKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAAL 478

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            V + M  +    +A  Y SLI  L +  + ++  A++ +M+E G  P  +TY  LI G 
Sbjct: 479 EVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQ 538

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           CK+ +F+ AF + + M   G   +  +YNV+   LCK G+
Sbjct: 539 CKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGR 578



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 159/356 (44%), Gaps = 55/356 (15%)

Query: 24  LFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE 83
           L +    NP+D        + YN L Y L   KL      DE +++L+         P  
Sbjct: 344 LMEQNGCNPDD--------WTYNSLIYGLCGGKL------DEAEELLNG-AIARGFTPTV 388

Query: 84  IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE---- 139
           I F N+I  Y +A  ++ AL++   M S N ++ ++ +  L+N  +   +L   KE    
Sbjct: 389 ITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNE 448

Query: 140 -------------------------------LFQIME-KYVSPDACSYNILIHGCVVSRR 167
                                          +F++ME +   P+A +Y  LI+G +  ++
Sbjct: 449 MFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKK 508

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           L  A  +  +M +  + P ++T+ TLI G C +   D A +L E +M    + PD Q + 
Sbjct: 509 LHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFE-MMEQNGLTPDEQAYN 567

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            L   LC  G    A      +VR  + +    Y+SL+    KAG  +    ++++M   
Sbjct: 568 VLTDALCKSGRAEEAYSF---LVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNE 624

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           GCK +  TY+ L+   CK++    A +ILD+M   G K N ++Y +I+  + K+GK
Sbjct: 625 GCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGK 680



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 147/314 (46%), Gaps = 9/314 (2%)

Query: 25  FKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI 84
            K      N+  A+ L P   N++ Y  II    +  M     ++   ++H+    P   
Sbjct: 439 LKEAKETLNEMFANGLAP---NVVTYTSIIDGYCKVGMVGAALEVFKLMEHEG-CHPNAW 494

Query: 85  IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM 144
            + ++I    + + L +A+ +  +M    +   V  + TL+  +    + D    LF++M
Sbjct: 495 TYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMM 554

Query: 145 EKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
           E+  ++PD  +YN+L      S R E+A+     +V++ +  T VT+ +L+ G       
Sbjct: 555 EQNGLTPDEQAYNVLTDALCKSGRAEEAYSF---LVRKGVVLTKVTYTSLVDGFSKAGNT 611

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
           D A  L E ++     K D   ++ L++ LC   +L+ AL + ++M    ++ +   Y+ 
Sbjct: 612 DFAAVLIEKMVN-EGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTI 670

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           +IS + K G+ +   ++  EM   G KP++ TY   IS +CK    E A  ++ EM   G
Sbjct: 671 IISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDG 730

Query: 324 CKANPISYNVILGG 337
              + ++YN+ + G
Sbjct: 731 VTPDVVTYNIFING 744



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 2/239 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           A+Q    +    + ++ K +N  L   L     + M +L+  ++++ + PD  +YN +I 
Sbjct: 128 AIQAIRRVGGKRLVLSPKCYNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIM 187

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                  L  A + F  + +  +Q    T   L+ G C    + +A  L   +M +   +
Sbjct: 188 AYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLM-MMPLMGCR 246

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
            +   +  LI+GLC    +  AL +   MV D   ++   Y+ LI  L K GR ++   +
Sbjct: 247 RNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGL 306

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           L EM  RG  P+  TYNA+I G+CK    + A  I   M   GC  +  +YN ++ GLC
Sbjct: 307 LDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLC 365



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 138/319 (43%), Gaps = 25/319 (7%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD---TRIVPKEIIFCNVIGFYGRARLLE 100
           + +L  Y +++  L + K  +E   IL Q+        IV   II   +I    +    +
Sbjct: 627 KADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMI----KEGKHD 682

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILI 159
            A  +F+EM S   + +   +   ++     G+++  + L   ME+  V+PD  +YNI I
Sbjct: 683 HAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFI 742

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI----------------YGLCLELRV 203
           +GC     ++ A+     MV    +P   T+  L+                 G+   + +
Sbjct: 743 NGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYVDTSGMWNWIEL 802

Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
           +   +L E +M+ + + P    ++S+I G C    L  A  + + M+   I  +  IY+ 
Sbjct: 803 NMVWQLLERMMK-HGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTM 861

Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           LI          +  + + +M E G +P   +Y+ LI G C E D++ A ++  ++    
Sbjct: 862 LIKCCCDIKLFGKAVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMD 921

Query: 324 CKANPISYNVILGGLCKDG 342
              N +++ ++  GL K G
Sbjct: 922 YNHNEVAWKILNDGLLKAG 940



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 1/189 (0%)

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YN+ +   +     E   K++  +V+  L P  VT+ T+I   C +  +  A +    ++
Sbjct: 147 YNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYF-CLL 205

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           R   ++ D     +L+ G C   +L  A  +   M       +   Y+ LI  L +A   
Sbjct: 206 RESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCV 265

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            E   ++  M   GC  N  TY  LI G CKE     A  +LDEM  +G   +  +YN +
Sbjct: 266 REALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAM 325

Query: 335 LGGLCKDGK 343
           + G CK G+
Sbjct: 326 IDGYCKSGR 334


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 149/311 (47%), Gaps = 19/311 (6%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L  A   ++   +  ++K +  IVP    +  +I  + +A L+++A + FDEM
Sbjct: 463 YSKVIGFLCDASKVEKAFSLFEEMKRNG-IVPSVYTYTILIDSFCKAGLIQQARKWFDEM 521

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRL 168
                   V  +  L++  L   ++    ELF++M  +   P+  +Y  LI G   + ++
Sbjct: 522 LHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQI 581

Query: 169 EDAWKVFDEM--------VKRRLQ--------PTLVTFGTLIYGLCLELRVDEALKLKED 212
           E A +++  M        + +  +        P ++T+G L+ GLC   RV EA +L  D
Sbjct: 582 EKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELL-D 640

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M  +  +P+  V+ ++I G C +G+L  A  V  +M       +   YSS I  LFK  
Sbjct: 641 TMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDN 700

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           R +    +L +M E  C PN V Y  ++ G CK    + A+ ++ +M +KGC  N ++Y 
Sbjct: 701 RLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYT 760

Query: 333 VILGGLCKDGK 343
            ++ G  K GK
Sbjct: 761 AMIDGFGKSGK 771



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 130/306 (42%), Gaps = 43/306 (14%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           VP  + +  ++     A L E A+ +   M S +    V  +  LL+  L  G+L R K 
Sbjct: 276 VPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKR 335

Query: 140 LFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           +  +M  +   P+   +N LIH    SR    A+K+F +M+K   QP  + +   I  +C
Sbjct: 336 ILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVC 395

Query: 199 ---------------------LELRV--------------------DEALKLKEDIMRVY 217
                                L+L V                    D+A K+  ++M   
Sbjct: 396 SNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKG 455

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            V PD   ++ +I  LC   ++  A  + EEM R+ I      Y+ LI +  KAG   + 
Sbjct: 456 FV-PDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQA 514

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
                EM  +GC PN VTY ALI  + K +    A  + + M  +GCK N ++Y  ++ G
Sbjct: 515 RKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDG 574

Query: 338 LCKDGK 343
            CK G+
Sbjct: 575 HCKAGQ 580



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 131/278 (47%), Gaps = 18/278 (6%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEM-SSFNVQMTVKFF----------NTLLNPKL 129
           P  + +  +I  + +A  +E+A Q++  M          K+F          N +    L
Sbjct: 563 PNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGAL 622

Query: 130 TCG--KLDRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
             G  K +R+KE  ++++  ++    P+   Y+ +I G     +L+DA +VF +M +R  
Sbjct: 623 VDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGY 682

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P L T+ + I  L  + R+D  LK+   ++   +  P+  ++  ++ GLC +G+   A 
Sbjct: 683 SPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLE-NSCTPNVVIYTEMVDGLCKIGKTDEAY 741

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            +  +M       +   Y+++I    K+G+  +   + ++M  +GC PN +TY  LI+  
Sbjct: 742 KLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHC 801

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           C     + A+ +LDEM       + +S+  I+ G  ++
Sbjct: 802 CSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGFSQE 839



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 3/205 (1%)

Query: 137 MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           ++EL ++ +    P   +YN LI   + + +L+ A+ V  EM+         T     Y 
Sbjct: 196 LEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYS 255

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           LC   +  EA  L   I    +  PD   +  ++ GLC       A+ +   M       
Sbjct: 256 LCKGGKCREAFDL---IDEAEDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIP 312

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +   Y  L+S   + G+      IL  M   GC PN   +N+LI  +CK  D+  A+ + 
Sbjct: 313 NVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLF 372

Query: 317 DEMGDKGCKANPISYNVILGGLCKD 341
            +M   GC+   + YN+ +G +C +
Sbjct: 373 KKMIKCGCQPGYLVYNIFIGSVCSN 397



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 2/130 (1%)

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           ++ +  KP    + +LI+      +L  A  VK EM+     MD    S    +L K G+
Sbjct: 202 LKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGK 261

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   ++ E ++    P++V YN ++SG C+   FE A  IL  M    C  N ++Y +
Sbjct: 262 CREAFDLIDEAEDF--VPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRI 319

Query: 334 ILGGLCKDGK 343
           +L G  + G+
Sbjct: 320 LLSGCLRKGQ 329



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 44/97 (45%)

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           E+  D  E+   + + L+    + G  N     L  +K+ G KP+  TYNALI  F + +
Sbjct: 166 EIKDDDHELLRRLLNFLVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRAD 225

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
             + A+ +  EM       +  + +     LCK GKC
Sbjct: 226 KLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGKC 262


>gi|15231160|ref|NP_187922.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75311241|sp|Q9LK58.1|PP225_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g13150
 gi|10172602|dbj|BAB01406.1| unnamed protein product [Arabidopsis thaliana]
 gi|66792658|gb|AAY56431.1| At3g13150 [Arabidopsis thaliana]
 gi|332641781|gb|AEE75302.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 551

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 145/297 (48%), Gaps = 6/297 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQIL-HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDE 108
           Y   I +L  AK F  + ++L +Q K D   +  E     ++  YG + + E A ++FDE
Sbjct: 90  YSAFIRRLREAKKFSTIDEVLQYQKKFDD--IKSEDFVIRIMLLYGYSGMAEHAHKLFDE 147

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKY-VSPDACSYNILIHGCVVSR 166
           M   N + TVK FN LL+  +   KLD  MK   ++ EK  ++PD  +YN +I       
Sbjct: 148 MPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKG 207

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
            ++D   +F+E+ K   +P L++F TL+          E  ++  D+M+  N+ P+ + +
Sbjct: 208 SMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRI-WDLMKSKNLSPNIRSY 266

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
            S ++GL    + + AL + + M  + I  D   Y++LI+A        E      EMKE
Sbjct: 267 NSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKE 326

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G  P++VTY  LI   CK+ D + A  + +E       + P  Y  ++  L   GK
Sbjct: 327 KGLTPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNMYKPVVERLMGAGK 383



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 112/245 (45%), Gaps = 18/245 (7%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++ +++    +K  DE  +   +L     I P  + +  +I    R   ++  L +F+E+
Sbjct: 160 FNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEEL 219

Query: 110 SSFNVQMTVKFFNTLLNP---KLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSR 166
                +  +  FNTLL     +    + DR+ +L +   K +SP+  SYN  + G   ++
Sbjct: 220 EKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMK--SKNLSPNIRSYNSRVRGLTRNK 277

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN------VK 220
           +  DA  + D M    + P + T+  LI       RVD  L   E++M+ YN      + 
Sbjct: 278 KFTDALNLIDVMKTEGISPDVHTYNALITAY----RVDNNL---EEVMKCYNEMKEKGLT 330

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   +  LI  LC  G+L  A+ V EE ++ K+     +Y  ++  L  AG+ +E   +
Sbjct: 331 PDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNMYKPVVERLMGAGKIDEATQL 390

Query: 281 LKEMK 285
           +K  K
Sbjct: 391 VKNGK 395


>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 671

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 153/337 (45%), Gaps = 42/337 (12%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           P+ P  Y    Y+ ++  L  A+ +++ + ++ ++  +    P E+ F   I  + +  L
Sbjct: 207 PVAPDTYT---YNTVLMGLCGARQWEDAEALMAEMVRN-HCPPNEVTFATQIRAFCQNGL 262

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL 158
           L+RA+Q+ D M  +     V  ++TL+N     G++D   EL   M     P+   YN  
Sbjct: 263 LDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQGRVDDAIELLNGM--LCKPNTICYNAA 320

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           + G  +++R ED  ++  EMV++   P   TF  L   LC    VD A+++ E  M  Y 
Sbjct: 321 LKGLCIAQRWEDVGQLIVEMVRKDCLPNEATFSMLTSCLCQNGLVDCAMEVLEQ-MHKYG 379

Query: 219 VKPDGQVFASLI--------------------------------KGLCAVGELSLALGVK 246
            +PD  ++ +LI                                KGLC       A  + 
Sbjct: 380 CRPDAVIYNTLIYSFSEQGRVDDALKLLNSMPCSPDVISFNAALKGLCRAERWDDAEELI 439

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
            +M+R+   +    ++ LI +L + GR N    + ++M + GC P+ VTY++LI+G  ++
Sbjct: 440 VQMLREDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQ 499

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              E+A  +   M    CK +   YN +L GLC+  +
Sbjct: 500 GLVESAIELFQSM---PCKPDIFGYNAVLKGLCRAAR 533



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 146/299 (48%), Gaps = 9/299 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQ-ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           N + Y+  +  L  A+ ++++ Q I+  ++ D   +P E  F  +     +  L++ A++
Sbjct: 313 NTICYNAALKGLCIAQRWEDVGQLIVEMVRKDC--LPNEATFSMLTSCLCQNGLVDCAME 370

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           + ++M  +  +     +NTL+      G++D   +L   M    SPD  S+N  + G   
Sbjct: 371 VLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLNSMP--CSPDVISFNAALKGLCR 428

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R +DA ++  +M++       +TF  LI  LC   RV+ A+++ E  M  Y   PD  
Sbjct: 429 AERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQ-MPKYGCTPDIV 487

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++SLI GL   G +  A+ + + M     + D   Y++++  L +A R  +   ++  M
Sbjct: 488 TYSSLINGLSEQGLVESAIELFQSM---PCKPDIFGYNAVLKGLCRAARWEDAGELISNM 544

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             + C PN +T+N LI+  C++   + A  + ++M   G   +  +YN ++ G  + G+
Sbjct: 545 ARKDCPPNEITFNILINSLCQKGLVDRAIEVFEQMPKYGSTPDIFTYNALINGFSEQGR 603



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 142/296 (47%), Gaps = 12/296 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   + ++ + L +  + D   ++L Q+ H     P  +I+  +I  +     ++ AL++
Sbjct: 348 NEATFSMLTSCLCQNGLVDCAMEVLEQM-HKYGCRPDAVIYNTLIYSFSEQGRVDDALKL 406

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            + M        V  FN  L       + D  +EL  Q++ +       ++NILI     
Sbjct: 407 LNSMP---CSPDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQ 463

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R+ +A +VF++M K    P +VT+ +LI GL  +  V+ A++L + +      KPD  
Sbjct: 464 NGRVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLVESAIELFQSM----PCKPDIF 519

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +++KGLC       A  +   M R     +   ++ LI++L + G  +    + ++M
Sbjct: 520 GYNAVLKGLCRAARWEDAGELISNMARKDCPPNEITFNILINSLCQKGLVDRAIEVFEQM 579

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            + G  P+  TYNALI+GF ++   + A  +L  M    CK + +SYN  L GLC+
Sbjct: 580 PKYGSTPDIFTYNALINGFSEQGRLDDARRLLSTM---SCKPDAVSYNSALKGLCR 632



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 138/289 (47%), Gaps = 12/289 (4%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R + + Y+ +I         D+  ++L+ +       P  I F   +    RA   + A 
Sbjct: 381 RPDAVIYNTLIYSFSEQGRVDDALKLLNSMPCS----PDVISFNAALKGLCRAERWDDAE 436

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
           ++  +M   +  +    FN L++     G+++   E+F+ M KY  +PD  +Y+ LI+G 
Sbjct: 437 ELIVQMLREDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPDIVTYSSLINGL 496

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
                +E A ++F  M     +P +  +  ++ GLC   R ++A +L  ++ R  +  P+
Sbjct: 497 SEQGLVESAIELFQSMP---CKPDIFGYNAVLKGLCRAARWEDAGELISNMAR-KDCPPN 552

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              F  LI  LC  G +  A+ V E+M +     D   Y++LI+   + GR ++   +L 
Sbjct: 553 EITFNILINSLCQKGLVDRAIEVFEQMPKYGSTPDIFTYNALINGFSEQGRLDDARRLLS 612

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
            M    CKP++V+YN+ + G C+ E ++ A  ++ EM    C  N +++
Sbjct: 613 TMS---CKPDAVSYNSALKGLCRAERWKEAEEVVAEMLRMKCPPNEVTF 658



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 123/260 (47%), Gaps = 9/260 (3%)

Query: 84  IIFCNV-IGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ 142
           ++ CN+ I      R L  A ++ D + +      V   NTL+      G+L   + L  
Sbjct: 112 VVACNILIKKLCAQRRLADAERVLDALKAAGAADPVSH-NTLVAGYCRDGRLADAERLLA 170

Query: 143 IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR 202
                 + +  +Y  LI+G   S RL DA  +   M    + P   T+ T++ GLC   +
Sbjct: 171 AAGLSGAANVVTYTTLINGYCRSGRLADALALIASMP---VAPDTYTYNTVLMGLCGARQ 227

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
            ++A  L  +++R +   P+   FA+ I+  C  G L  A+ + + M +     D  IYS
Sbjct: 228 WEDAEALMAEMVRNH-CPPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYS 286

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           +L++   + GR ++   +L  M    CKPN++ YNA + G C  + +E    ++ EM  K
Sbjct: 287 TLVNGFSEQGRVDDAIELLNGML---CKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRK 343

Query: 323 GCKANPISYNVILGGLCKDG 342
            C  N  +++++   LC++G
Sbjct: 344 DCLPNEATFSMLTSCLCQNG 363



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 6/188 (3%)

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           NILI      RRL DA +V D + K       V+  TL+ G C + R+ +A +L      
Sbjct: 116 NILIKKLCAQRRLADAERVLDAL-KAAGAADPVSHNTLVAGYCRDGRLADAERLLAAAGL 174

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
                 +   + +LI G C  G L+ AL +   M    +  D   Y++++  L  A +  
Sbjct: 175 SGAA--NVVTYTTLINGYCRSGRLADALALIASM---PVAPDTYTYNTVLMGLCGARQWE 229

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +  A++ EM    C PN VT+   I  FC+    + A  +LD M   GC  + + Y+ ++
Sbjct: 230 DAEALMAEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTLV 289

Query: 336 GGLCKDGK 343
            G  + G+
Sbjct: 290 NGFSEQGR 297


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 145/289 (50%), Gaps = 8/289 (2%)

Query: 56  KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNV 114
           K+G+ +    + +I+     D+  VP  I +  +I G     R ++ A ++  +M     
Sbjct: 131 KIGKTRKATRIMEIIE----DSGAVPDVITYNVLISGMCSTGRWMD-AEKLLADMVRRGC 185

Query: 115 QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWK 173
             +V  FN L+N     G L R  ++ + M K+  +P++ SYN L+HG    +++E A +
Sbjct: 186 SPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIE 245

Query: 174 VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGL 233
              +M  R   P +VT+ TL+  LC + +VD A++L    +      P    + ++I GL
Sbjct: 246 YLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQ-LSSKGCSPVLITYNTVIDGL 304

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
             VG+   A  + +EM    ++ D   YSSL+  L + G+ +E      +++  G KPN+
Sbjct: 305 SKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNA 364

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +TYNA++ G CK    + A   L  M  +GCK    SY +++ GL  +G
Sbjct: 365 ITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEG 413



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 113/213 (53%), Gaps = 2/213 (0%)

Query: 132 GKLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           GK  +   + +I+E   + PD  +YN+LI G   + R  DA K+  +MV+R   P++VTF
Sbjct: 133 GKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTF 192

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
             LI  LC +  +  A+ + E  M  +   P+   +  L+ G C   ++  A+    +M 
Sbjct: 193 NILINFLCRKGLLGRAIDVLEK-MPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMT 251

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
                 D   Y++L++AL K G+ +    +L ++  +GC P  +TYN +I G  K    +
Sbjct: 252 SRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTD 311

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            A  +LDEM  KG K + I+Y+ ++GGL ++GK
Sbjct: 312 QAAKLLDEMRAKGLKPDIITYSSLVGGLSREGK 344



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 93/176 (52%), Gaps = 1/176 (0%)

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           LE+ ++  + MV R   P ++   +LI G C   +  +A ++ E I+      PD   + 
Sbjct: 100 LEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIME-IIEDSGAVPDVITYN 158

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            LI G+C+ G    A  +  +MVR         ++ LI+ L + G       +L++M + 
Sbjct: 159 VLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKH 218

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           GC PNS++YN L+ GFCKE+  E A   L +M  +GC  + ++YN +L  LCKDGK
Sbjct: 219 GCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGK 274



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 157/325 (48%), Gaps = 18/325 (5%)

Query: 30  PNPNDTEAH-PLKPFRYNLLHYDLI-----ITKLGRAKMFDEMQQILHQLKHDTRIVPKE 83
           PN +    H  L P  ++L +++ I     ++KL R    +E  + L  + +   I   +
Sbjct: 62  PNGHLGNGHVSLSPI-HSLTNFEEIESNNNLSKLVRNGELEEGFRFLESMVYRGDI--PD 118

Query: 84  IIFCNVI--GF--YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK-LDRMK 138
           II C  +  GF   G+ R   R +++ ++  +    +T   +N L++   + G+ +D  K
Sbjct: 119 IIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVIT---YNVLISGMCSTGRWMDAEK 175

Query: 139 ELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            L  ++ +  SP   ++NILI+       L  A  V ++M K    P  +++  L++G C
Sbjct: 176 LLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFC 235

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
            E +++ A++     M      PD   + +L+  LC  G++  A+ +  ++         
Sbjct: 236 KEKKMERAIEYLGK-MTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVL 294

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             Y+++I  L K G+ ++   +L EM+ +G KP+ +TY++L+ G  +E   + A     +
Sbjct: 295 ITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHD 354

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           +   G K N I+YN I+ GLCK  K
Sbjct: 355 LEVLGVKPNAITYNAIMLGLCKARK 379



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 139/279 (49%), Gaps = 3/279 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+++I+ +     + + +++L  +       P  + F  +I F  R  LL RA+ +
Sbjct: 153 DVITYNVLISGMCSTGRWMDAEKLLADMVRRG-CSPSVVTFNILINFLCRKGLLGRAIDV 211

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNILIHGCVV 164
            ++M           +N LL+      K++R  E L ++  +   PD  +YN L+     
Sbjct: 212 LEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCK 271

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +++ A ++ +++  +   P L+T+ T+I GL    + D+A KL ++ MR   +KPD  
Sbjct: 272 DGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDE-MRAKGLKPDII 330

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++SL+ GL   G++  A+    ++    ++ +A  Y++++  L KA + +     L  M
Sbjct: 331 TYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYM 390

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
            +RGCKP   +Y  LI G   E   + A  +L+E+  +G
Sbjct: 391 VQRGCKPTEASYTILIEGLAYEGLAKEALELLNELCLRG 429


>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 418

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 134/251 (53%), Gaps = 2/251 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y +   L    ++ + M +  VQ  V  ++ L+N      K+D    L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++K + P+  ++  LI G   + R++ A +++ +M+ + L P L+T+ TLIYGLC 
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 289 KGDLKQAQDLIDE-MIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+EM   G KP   TY  +I+ FCK+ D      +L EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWXGSKLLKEM 407

Query: 320 GDKGCKANPIS 330
              G K + ++
Sbjct: 408 QRDGYKPSVVT 418



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 125/228 (54%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++  +  G++   + +F  + K+ + P   S+N L++G +    L + +++ 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M    +QP + T+  LI GLC E ++D+A  L ++++    + P+G  F +LI G C 
Sbjct: 195 NAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDK-GLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++M+   +  D   Y++LI  L K G   +   ++ EM  +G KP+  T
Sbjct: 254 NGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGR 361



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 136/267 (50%), Gaps = 9/267 (3%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ + ++ +V  FNTL+N  +  G L+ 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M+   V PD  +Y++LI+G     +++DA  +FDEM+ + L P  VTF TLI 
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   RVD A+++ + ++   ++ PD   + +LI GLC  G+L  A  + +EM+   ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK 308

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI    K G         K M +   + + V Y ALISG C+E     A  +
Sbjct: 309 PDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
           L EM   G K    +Y +I+   CK G
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKG 395



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  EE +          ++ L+ +  K G      ++   + + G +P+ V++N L+
Sbjct: 119 LVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G+ K  D    F + + M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 NGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 131/257 (50%), Gaps = 2/257 (0%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKY 147
           +I ++GR+  L+ A++MF EM     +     +  L+N     G++   +  F  M E+ 
Sbjct: 106 LIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERG 165

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           ++P+  +YN+L+       +L+ A  +F EM +R  QP++VT+  L+  LC   RV  A 
Sbjct: 166 LTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAAR 225

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           KL    M      PD   +++L+ GL   G +  A  V  EMV   + +D   Y+SL++ 
Sbjct: 226 KLFHK-MTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLAT 284

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L KAG  +    ++KEM  +G  P++ ++N ++    K    +AA  +   M + GCK +
Sbjct: 285 LAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPD 344

Query: 328 PISYNVILGGLCKDGKC 344
            ISYN+++    + G  
Sbjct: 345 LISYNILIDSYARFGDA 361



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 155/329 (47%), Gaps = 36/329 (10%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  ++  LG+A    E +     +  +  + P    +  ++  + +   L+ AL +F EM
Sbjct: 138 YGFLVNALGKAGRVQEARSFFDAM-LERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEM 196

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRL 168
                Q +V  +N LL+   + G++   ++LF  M     SPD+ +Y+ L++G   S R+
Sbjct: 197 KRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRV 256

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR--------VYNV- 219
           E+A KVF EMV R +   LV + +L+  L     +D   KL +++ R         +N  
Sbjct: 257 EEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTI 316

Query: 220 --------KPDG--QVFASLIKGLCA---------------VGELSLALGVKEEMVRDKI 254
                   KPD   +VFA +++  C                 G+ + A  + EEMV    
Sbjct: 317 MDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGF 376

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
             +   Y+SLI  L   G+ +E  A+L+EM+  GC+P+ VTYN L+    K  + + A  
Sbjct: 377 IPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAAR 436

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  +M DKG + + +SY V + GL  D +
Sbjct: 437 LFQQMKDKGVEPDTLSYAVRIDGLAFDDR 465



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 142/292 (48%), Gaps = 5/292 (1%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTR-IVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111
           ++  L    + D ++ +L ++  + R + P  ++   +I  YGR      A  +F++  S
Sbjct: 1   MLVVLASWGILDPLETLLKEMVAEGRPLRPNTLV--KLITAYGRGNKSGDAFDLFNQAES 58

Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLED 170
           F    TV  F  L++  +  G+ +R + +++ +++K    D  +YN+LI     S +L+ 
Sbjct: 59  FACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDS 118

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           A ++F EM  +  +P   T+G L+  L    RV EA     D M    + P+   +  L+
Sbjct: 119 AMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFF-DAMLERGLTPNIPTYNLLM 177

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
                VG+L +ALG+  EM R   +     Y+ L+ AL  AGR      +  +M   GC 
Sbjct: 178 DAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCS 237

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           P+S TY+ L++G  K    E A  +  EM D+G   + ++YN +L  L K G
Sbjct: 238 PDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAG 289



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 145/303 (47%), Gaps = 3/303 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + F+ +++ Y++++  L  A      +++ H++  D    P    +  ++   G++  +E
Sbjct: 199 RGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDG-CSPDSYTYSTLVNGLGKSGRVE 257

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
            A ++F EM    V + +  +N+LL      G +DR+ +L + M  K   PDA S+N ++
Sbjct: 258 EAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIM 317

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
                + + + A +VF  MV+   +P L+++  LI          +A ++ E+++    +
Sbjct: 318 DALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFI 377

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+ + + SLI  L   G++  A  V EEM       D   Y+ L+  L K G       
Sbjct: 378 -PETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAAR 436

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           + ++MK++G +P++++Y   I G   ++  + A  +  +M   GC  +   Y +++    
Sbjct: 437 LFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRAAH 496

Query: 340 KDG 342
           + G
Sbjct: 497 RAG 499



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 118/262 (45%), Gaps = 3/262 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  ++  LG++   +E  ++  ++  D  +    + + +++    +A  ++R  ++  EM
Sbjct: 243 YSTLVNGLGKSGRVEEAHKVFREMV-DRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEM 301

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
           S          FNT+++      K D  +E+F +++E    PD  SYNILI         
Sbjct: 302 SRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDA 361

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
             A ++ +EMV+    P   T+ +LI+ L  + +VDEA  + E+ M     +PD   +  
Sbjct: 362 AQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEE-METAGCRPDVVTYNR 420

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+  L   GE   A  + ++M    +E D   Y+  I  L    R +E   + K+MK  G
Sbjct: 421 LMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVG 480

Query: 289 CKPNSVTYNALISGFCKEEDFE 310
           C  +   Y  LI    +  D E
Sbjct: 481 CPVDKAMYRILIRAAHRAGDTE 502



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 1/175 (0%)

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           DA+ +F++       PT+  F  LI  L      + A  + + +++    + D   +  L
Sbjct: 48  DAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQ-KGCQLDRFAYNVL 106

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           I+     G+L  A+ +  EM     E D   Y  L++AL KAGR  E  +    M ERG 
Sbjct: 107 IRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGL 166

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
            PN  TYN L+  F K    + A  +  EM  +G + + ++YN++L  LC  G+ 
Sbjct: 167 TPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRV 221


>gi|356523086|ref|XP_003530173.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g17670-like [Glycine max]
          Length = 456

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 156/341 (45%), Gaps = 18/341 (5%)

Query: 12  PRLQKDPKLALQLFKNPNPNP-----NDTEAHPLKP-FRYNLLHY--DLIITKLGRAKMF 63
           P  Q+    +L LFK+PN        N        P F  +LLH    L  T     K F
Sbjct: 41  PSKQQQKPSSLPLFKSPNLEDAKKLFNSIANSSSDPRFPNSLLHSYAKLATTPSDSIKFF 100

Query: 64  DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT 123
           + + + L     D       I+  +       + LL    Q  + M +  +       + 
Sbjct: 101 NHITKTLPSFSPDRSTF--HILLSHA---SNNSNLLSPIHQXLNLMLAAGITPDTATADV 155

Query: 124 LLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR- 181
            +    + G+LD   EL  +   K+  PD  ++N L+     S  +   +   DEM ++ 
Sbjct: 156 AVRSLCSAGRLDHAVELIKEFASKHCPPDTYTFNFLVKHLCKSSTITTVYAFIDEMREKF 215

Query: 182 RLQPTLVTFGTLIYGLC--LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
            ++P LVT+  LI  +C    L + EA++L   ++     K D  V+ +++KG C +   
Sbjct: 216 DVKPDLVTYTILIDNVCNGKNLNLREAMRLVS-VLHEEGFKLDCFVYNTIMKGYCVLSRG 274

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
           S A+ V  +M  + +E D   Y++LI  L K+GR  E   +L+ M E+G  P+ VTY +L
Sbjct: 275 SEAIEVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVTEARKLLRVMAEKGYFPDEVTYTSL 334

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           ++G C++ D   A  +L EM  KGC  N  +YN +L GLCK
Sbjct: 335 MNGLCRKGDALGALALLGEMEAKGCSPNACTYNTLLHGLCK 375



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 124/298 (41%), Gaps = 43/298 (14%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM- 109
           D+ +  L  A   D   +++ +        P    F  ++    ++  +       DEM 
Sbjct: 154 DVAVRSLCSAGRLDHAVELIKEFA-SKHCPPDTYTFNFLVKHLCKSSTITTVYAFIDEMR 212

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM----EKYVSPDACSYNILIHGCVVS 165
             F+V+  +  +  L++  +  GK   ++E  +++    E+    D   YN ++ G  V 
Sbjct: 213 EKFDVKPDLVTYTILID-NVCNGKNLNLREAMRLVSVLHEEGFKLDCFVYNTIMKGYCVL 271

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            R  +A +V+++M +  ++P LVT+ TLI+GL    RV EA KL   +M      PD   
Sbjct: 272 SRGSEAIEVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVTEARKLLR-VMAEKGYFPDEVT 330

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           + SL+ GLC  G+   AL +  EM                                   +
Sbjct: 331 YTSLMNGLCRKGDALGALALLGEM-----------------------------------E 355

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +GC PN+ TYN L+ G CK    E A      +   G K +  SY   +  LC+DG+
Sbjct: 356 AKGCSPNACTYNTLLHGLCKARLVEKAVKFYQVIRAGGLKLDTASYGTFVRALCRDGR 413



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 84/168 (50%), Gaps = 2/168 (1%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIH 160
           A++++++M    V+  +  +NTL+      G++   ++L ++M EK   PD  +Y  L++
Sbjct: 277 AIEVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVTEARKLLRVMAEKGYFPDEVTYTSLMN 336

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G         A  +  EM  +   P   T+ TL++GLC    V++A+K  + ++R   +K
Sbjct: 337 GLCRKGDALGALALLGEMEAKGCSPNACTYNTLLHGLCKARLVEKAVKFYQ-VIRAGGLK 395

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
            D   + + ++ LC  G ++ A  V +  V  K   D   YS+L S L
Sbjct: 396 LDTASYGTFVRALCRDGRIAEAYEVFDYAVESKSLTDVAAYSTLESTL 443



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 8/119 (6%)

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME---KYVSP 150
           GR     + L++  E   F  ++T   + +L+N    C K D +  L  + E   K  SP
Sbjct: 307 GRVTEARKLLRVMAEKGYFPDEVT---YTSLMNG--LCRKGDALGALALLGEMEAKGCSP 361

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           +AC+YN L+HG   +R +E A K +  +    L+    ++GT +  LC + R+ EA ++
Sbjct: 362 NACTYNTLLHGLCKARLVEKAVKFYQVIRAGGLKLDTASYGTFVRALCRDGRIAEAYEV 420


>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 806

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 166/372 (44%), Gaps = 42/372 (11%)

Query: 2   PTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAK 61
           P S   +  + R + D   +L+ FK+ + +           F++  L Y+ +I KLGR  
Sbjct: 38  PVSESHVVKVLRQEHDIVSSLEYFKSLSNS---------GTFKHTHLTYETMIDKLGRNN 88

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
             D +  +L Q+K +     +E+ F  VI  Y R+ L E+ L+MF  +  F  + +VK +
Sbjct: 89  EMDGVSYLLQQMKLENVPCSQEL-FQFVIKCYRRSNLGEQGLKMFYRIREFGCEPSVKIY 147

Query: 122 NTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           N +L+  L+      +  L+  M+ + + P+  +YN+L+     + +++ A K+  EM  
Sbjct: 148 NLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSN 207

Query: 181 R------------------------------RLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           +                              + +P +  +  LI+G+C E R  EA  L 
Sbjct: 208 KGCDPDDVSYTTVISSMCKLGDVDKARELAMKFEPVVPVYNALIHGVCKECRFKEAFDLM 267

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
            +++    V P+   ++++I  L  +G + L+L V   M       +   ++SLI   F 
Sbjct: 268 NEMVD-RGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFV 326

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
            GR  +   +   M   G  PN V YN LI G C + + + A ++ ++M     + N  +
Sbjct: 327 RGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTT 386

Query: 331 YNVILGGLCKDG 342
           Y+ I+ G  K G
Sbjct: 387 YSTIIYGFAKSG 398



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 146/330 (44%), Gaps = 38/330 (11%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I  + +   F E   +++++  D  + P  I +  VI        +E +L +F  M
Sbjct: 247 YNALIHGVCKECRFKEAFDLMNEMV-DRGVDPNVISYSTVISCLSDMGNVELSLAVFGRM 305

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
                +  V+ F +L+      G++     L+ +M  + VSP+  +YN LIHG      +
Sbjct: 306 FVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNM 365

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYG-------------------------------- 196
           ++A  V+++M K  ++P + T+ T+IYG                                
Sbjct: 366 DEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCM 425

Query: 197 ---LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
              LC     D+A  L ++++      P    F + IKGLC  G +  A+ V ++M + +
Sbjct: 426 VDVLCQMSMFDQAFDLIDNMIS-DGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYE 484

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
              +   Y+ L+  LF+A    E   +++E++ER  + + VTYN ++ GF      +   
Sbjct: 485 CLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFDCVTYNTIMYGFSFNGMHQQVL 544

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +L +M   G K + I+ N  +   CK GK
Sbjct: 545 QLLGKMLVNGIKLDTITVNTTVNAYCKLGK 574



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 40/298 (13%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P    F ++I GF+ R R+ + A+ +++ M    V   V  +NTL++   + G +D    
Sbjct: 312 PNVQTFTSLIKGFFVRGRVGD-AVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAIS 370

Query: 140 LFQIMEK-YVSPDACSYNILIHG------------------------------CVVS--- 165
           ++  MEK  + P+  +Y+ +I+G                              C+V    
Sbjct: 371 VWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLC 430

Query: 166 --RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
                + A+ + D M+     PT++TF   I GLC   RV+ A+ +  D M  Y   P+ 
Sbjct: 431 QMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVL-DQMEKYECLPNI 489

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
           + +  L+ GL        A G+  E+   K+E D   Y++++      G   +   +L +
Sbjct: 490 RTYNELLDGLFRANAFREACGLIRELEERKVEFDCVTYNTIMYGFSFNGMHQQVLQLLGK 549

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM-GDKGCKANPISYNVILGGLCK 340
           M   G K +++T N  ++ +CK    + A  +LD +  +K  +A+ I++ +IL G+C 
Sbjct: 550 MLVNGIKLDTITVNTTVNAYCKLGKVKTAIKVLDNISAEKEFRADIITHTIILWGICN 607



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 107/241 (44%), Gaps = 3/241 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +++  ++    +  + ++A  + D M S     TV  FN  +      G+++    +
Sbjct: 417 PNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNV 476

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
              MEKY   P+  +YN L+ G   +    +A  +  E+ +R+++   VT+ T++YG   
Sbjct: 477 LDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFDCVTYNTIMYGFSF 536

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK-IEMDA 258
                + L+L    M V  +K D     + +   C +G++  A+ V + +  +K    D 
Sbjct: 537 NGMHQQVLQLLGK-MLVNGIKLDTITVNTTVNAYCKLGKVKTAIKVLDNISAEKEFRADI 595

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             ++ ++  +       E    L EM +RG  PN  T+N L+ GF  +        ILD+
Sbjct: 596 ITHTIILWGICNWLGTEEAVVYLHEMLKRGIFPNIATWNVLVRGFFSKLGHMGPIRILDD 655

Query: 319 M 319
           +
Sbjct: 656 I 656


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 135/306 (44%), Gaps = 3/306 (0%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           P K  R N + Y  +I  L      DE   I  +++ D            V   +   R 
Sbjct: 31  PKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRR 90

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           +E A+ +F EM     +  +  +  ++N      KL+  + +  +++EK + P   +YN 
Sbjct: 91  ME-AINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNA 149

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G      +E A ++ D M      P   T+  LI G C +  V  A+ L   ++   
Sbjct: 150 LIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLES- 208

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + P    + SLI G C +G L  A  +   M  + +  D   YS  I  L K GR  E 
Sbjct: 209 RLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEA 268

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +   +KE+G K N V Y ALI G+CK    + A ++LD M  + C  N  +YN ++ G
Sbjct: 269 NVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDG 328

Query: 338 LCKDGK 343
           LCK+ K
Sbjct: 329 LCKERK 334



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 126/245 (51%), Gaps = 2/245 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNI 157
           LE   ++ DEM    +  +V  +N L++     G ++  +E+  +M     +P+  +YN 
Sbjct: 125 LEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNE 184

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G    + +  A  +  +M++ RL P++VT+ +LI+G C    +D A +L  ++M   
Sbjct: 185 LICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLL-NLMNEN 243

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            V PD   ++  I  LC  G +  A  +   +    I+ +  IY++LI    KAG+ ++ 
Sbjct: 244 GVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDA 303

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            ++L  M    C PNS TYNALI G CKE   + A  +++ M  KG K    +Y +++  
Sbjct: 304 NSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVA 363

Query: 338 LCKDG 342
           + K+G
Sbjct: 364 MLKEG 368



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 6/293 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I    +  M +  Q+IL  L H     P E  +  +I  + R + + RA+ +  +M
Sbjct: 147 YNALIDGYCKEGMVEAAQEIL-DLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKM 205

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
               +  +V  +N+L++ +   G LD    L  +M E  V PD  +Y++ I       R+
Sbjct: 206 LESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRI 265

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E+A  +F+ + ++ ++   V +  LI G C   ++D+A  L  D M   +  P+   + +
Sbjct: 266 EEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLL-DRMLTEDCLPNSSTYNA 324

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI GLC   ++  AL + E M++  ++     Y+ LI A+ K G  +    IL +M   G
Sbjct: 325 LIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSG 384

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL---GGL 338
            +P+   Y A I  FC   + + A  ++  M ++G   + ++Y +++   GGL
Sbjct: 385 YQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGL 437



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 92/177 (51%), Gaps = 1/177 (0%)

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
           ++  +  A+ VF+ M K+  +   V++  LI+GLC   RVDE + + +  MR  +  P  
Sbjct: 16  LNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKK-MREDDCYPTV 74

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
           + +  ++  L   G    A+ +  EM     E +   Y+ +I+A+ K  +  E   IL E
Sbjct: 75  RTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDE 134

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           M E+G  P+  TYNALI G+CKE   EAA  ILD M    C  N  +YN ++ G C+
Sbjct: 135 MVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCR 191



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 143/328 (43%), Gaps = 32/328 (9%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I    +    D   ++L+ L ++  +VP +  +   I    +   +E A  +
Sbjct: 213 SVVTYNSLIHGQCKIGYLDSAYRLLN-LMNENGVVPDQWTYSVFIDTLCKKGRIEEANVL 271

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           F+ +    ++     +  L++     GK+D    L  +++ +   P++ +YN LI G   
Sbjct: 272 FNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCK 331

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            R++++A  + + M+++ L+ T+ T+  LI  +  E   D A ++  D M     +PD  
Sbjct: 332 ERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRIL-DQMVSSGYQPDVY 390

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++ + I   C  G +  A  +   M    +  DA  Y+ +I A    G  N    +LK M
Sbjct: 391 IYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRM 450

Query: 285 KERGCKPNSVTYNALISGFCKEE-----------------------------DFEAAFTI 315
            + GC P+  TY+ LI    KEE                              FE A  +
Sbjct: 451 FDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALEL 510

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
            ++M + GC  N  +Y  ++ GLCK G+
Sbjct: 511 FEKMLEHGCSPNINTYAKLIIGLCKVGR 538



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 113/274 (41%), Gaps = 31/274 (11%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
            + A ++ D+M S   Q  V  +   ++   T G +   +++  +M E+ V PDA +Y +
Sbjct: 370 FDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTL 429

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE----------------- 200
           +I        L  A+ V   M      P+  T+  LI  L  E                 
Sbjct: 430 VIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPN 489

Query: 201 ------------LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
                       ++ + AL+L E ++  +   P+   +A LI GLC VG L +A  + + 
Sbjct: 490 VFFADVADVWKMMKFETALELFEKMLE-HGCSPNINTYAKLIIGLCKVGRLGVAQKLFDH 548

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M    +     IY+SL++   + G   +   ++  M E G  P   + N L  G  +E  
Sbjct: 549 MNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGS 608

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            E A  +   +   G   + +++ +++ GL K+G
Sbjct: 609 KEKAKVVFSNLLQCGYNDDEVAWKILIDGLLKNG 642



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 4/173 (2%)

Query: 133 KLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           K +   ELF+ ++E   SP+  +Y  LI G     RL  A K+FD M +R + P+   + 
Sbjct: 503 KFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYN 562

Query: 192 TLIYGLCLELRV-DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
           +L+   C EL +  +A++L   +M  +   P  +    L  GL   G    A  V   ++
Sbjct: 563 SLL-NCCCELGIYGDAVRLVGAMME-HGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLL 620

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
           +     D   +  LI  L K G  +    +L  M+ RGC+ +  TY  LI G 
Sbjct: 621 QCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRMLIEGL 673



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 9/54 (16%)

Query: 299 LISGFCK---------EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +++G+CK           D  +AF++ + M  KGC+ N +SY  ++ GLC+ G+
Sbjct: 1   MVNGYCKLGNLVEANLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGR 54



 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 33/69 (47%)

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           N   ++   M ++GC+ N V+Y  LI G C+    +    I  +M +  C     +Y VI
Sbjct: 21  NSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVI 80

Query: 335 LGGLCKDGK 343
           +  L + G+
Sbjct: 81  VHALFESGR 89


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 166/362 (45%), Gaps = 44/362 (12%)

Query: 7   RLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEM 66
            ++ L  L  DP  ALQ     +  PN         F++N+  Y  ++T +   K+  ++
Sbjct: 70  HVSSLFSLNLDPHTALQFSYWISQTPN---------FKHNVDSYASLLTLIDHHKIVSDV 120

Query: 67  QQILHQLKHDTRIVPKEIIFCNV--------------------IGFYGRARLLERALQMF 106
            +I+  +       P  +   ++                    +    R  L++   Q++
Sbjct: 121 PKIIVSMIKCCYSAPDALFVSDICRKMSKDDITKLSLKCYNELLTLLARFGLVDEMNQLY 180

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVS 165
            EM    V M +  FN ++N     G +   K+   ++++  +SPD  +    I G   S
Sbjct: 181 TEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRS 240

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL----KLKEDIMRVYNVKP 221
           + ++ A++VF+EM  R      V++  LI+GLC   R+DEA+    ++K+D        P
Sbjct: 241 KDVDSAFRVFEEMPNR----NEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDC-----CYP 291

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   + +LIKGLC    +  A+G+ +EM+   +  D   Y+SLI+   +AG  +    +L
Sbjct: 292 NVYTYTALIKGLCR-KNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLL 350

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             MKERG  P+  TY   I   CK    E A  + D + ++G  AN I Y+V++ G CK 
Sbjct: 351 SLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKV 410

Query: 342 GK 343
           GK
Sbjct: 411 GK 412



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 147/298 (49%), Gaps = 8/298 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  ++L+I    +     E +Q + ++     + P      + I  Y R++ ++ A ++
Sbjct: 191 DIYTFNLMINVYCKMGFVKEAKQFMCKMIQ-AGLSPDYFTSTSFILGYCRSKDVDSAFRV 249

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           F+EM + N       +N L++     G++D    LF ++ +    P+  +Y  LI G + 
Sbjct: 250 FEEMPNRNEVS----YNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKG-LC 304

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            + +  A  + DEM++R L P L+T+ +LI G C    +D A +L   +M+   + PD +
Sbjct: 305 RKNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLS-LMKERGLVPDQR 363

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +   I  LC    +  A  + + +  + +  +  +YS LI    K G+ +E   + ++M
Sbjct: 364 TYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKM 423

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             + C PN+ T+NALI G C   + + A ++ D+M   G K    ++N+++G + K G
Sbjct: 424 LSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQG 481



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 143/298 (47%), Gaps = 4/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y+ +I  L  A   DE   +  ++K D    P    +  +I    R  +  +A+ +
Sbjct: 257 NEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDC-CYPNVYTYTALIKGLCRKNV-HKAMGL 314

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            DEM   N+   +  +N+L+  +   G LD    L  +M E+ + PD  +Y   I     
Sbjct: 315 LDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCK 374

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S R+E+A ++FD + +  +   ++ +  LI G C   +VDEA  L E ++   N  P+  
Sbjct: 375 SNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLS-KNCSPNAY 433

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI GLC+ G L  AL + ++MV+  ++     ++ LI  + K G  ++    L++M
Sbjct: 434 TFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKM 493

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
              G KP + TYNA I  +C     + A  ++ +M ++G   +  +Y  ++    K G
Sbjct: 494 MSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLG 551



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 156/397 (39%), Gaps = 100/397 (25%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y+ +I    RA   D   ++L  +K +  +VP +  +   I F  ++  +E A ++
Sbjct: 326 DLITYNSLIAGQCRAGHLDSAYRLLSLMK-ERGLVPDQRTYGCFIDFLCKSNRVEEARRL 384

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHG--- 161
           FD ++   V   V  ++ L++     GK+D    LF+ ++ K  SP+A ++N LIHG   
Sbjct: 385 FDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCS 444

Query: 162 ---------------------------CVVSRRL-----EDAWKVFDEMVKRRLQPTLVT 189
                                       ++ R L     +DA K   +M+    +P   T
Sbjct: 445 AGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVART 504

Query: 190 FGTLIYGLCLELRVDEA----LKLKED-----------IMRVY----------------- 217
           +   I   C   +V EA    +++KE+           +++ Y                 
Sbjct: 505 YNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMF 564

Query: 218 --NVKPDGQVFASLIK---------------GLCAVG--------------ELSLALGVK 246
             + +P    F SLIK               G+ +V               E  + + + 
Sbjct: 565 DADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELF 624

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           EEM +     D+  Y  LIS + K         +L +M++ G  P+ + +NA+IS  CK 
Sbjct: 625 EEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKL 684

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + +  A  I+++M   G          ++ GL ++G+
Sbjct: 685 QKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGE 721



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 135/362 (37%), Gaps = 67/362 (18%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y ++I    +    DE   +  ++       P    F  +I     A  L+ AL +
Sbjct: 396 NVIMYSVLIDGYCKVGKVDEAGCLFEKML-SKNCSPNAYTFNALIHGLCSAGNLKEALSL 454

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM--------------------- 144
           FD+M    ++ TV  FN L+   L  G  D   +  Q M                     
Sbjct: 455 FDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCS 514

Query: 145 ---------------EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
                          E+ V PD  +Y  LI           A+ V   M     +P+  T
Sbjct: 515 AGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHT 574

Query: 190 FGTLIYGL-----CLE------------------------LRVDEALKLKEDIMRVYNVK 220
           F +LI  L      +E                        +  D  ++L E+ M  +   
Sbjct: 575 FLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEE-MEKHGCT 633

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD + +  LI G+C V  L +AL + ++M ++ I     +++++IS   K  +  E   I
Sbjct: 634 PDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANI 693

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +++M   G  P       LI G  +E + E   ++  ++   G   + I++ +++ G+ K
Sbjct: 694 VEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILIDGMLK 753

Query: 341 DG 342
            G
Sbjct: 754 QG 755



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 119/294 (40%), Gaps = 25/294 (8%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+  I     A    E + ++ Q+K +  + P +  + ++I  YG+  L   A  +   M
Sbjct: 505 YNAFIEVYCSAGKVQEAEDMMVQMKEEG-VPPDDFTYTSLIKAYGKLGLTYSAFDVLKSM 563

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
              + + +   F +L+            K+LF   ++YV   +    +            
Sbjct: 564 FDADCEPSHHTFLSLI------------KQLFD--KRYVVEKSGETGVESVSNFGDVPGS 609

Query: 170 DAWK---------VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           + WK         +F+EM K    P    +  LI G+C    +  ALKL  D M+   + 
Sbjct: 610 NMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLL-DQMQKEGIS 668

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P   VF ++I   C + +   A  + E+M+            +LI  L++ G      ++
Sbjct: 669 PSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSV 728

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            K+++  G   + + +  LI G  K+   E    + +EM   GC  +P +Y+++
Sbjct: 729 FKKLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNGCNFSPRTYSIL 782


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 123/242 (50%), Gaps = 2/242 (0%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNIL 158
           +   Q+  +M   NV      FN L++     G++   + +  +M K    PD  +YN L
Sbjct: 247 QEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNAL 306

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           + G      + +A ++F+ MVKR L+P ++ +  LI G C    VDEA+ L +++    N
Sbjct: 307 MEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCN-KN 365

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + P    + SLI GLC  G +S    + +EM       D   Y+ LI AL K GR  E  
Sbjct: 366 LVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEAL 425

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +L  M ++G KPN VTYNA++ G+C   +   A  I + M   G + + ++YNV++ G 
Sbjct: 426 GVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGY 485

Query: 339 CK 340
           CK
Sbjct: 486 CK 487



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 140/293 (47%), Gaps = 5/293 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           +D ++  + R   +     +  QL+    I P    F  +I  Y        A  +   +
Sbjct: 58  FDKLLGAIVRMGHYPTAISLFTQLQ-SKGISPSIATFTILINCYFHQSHTAFAFSLLATI 116

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDACSYNILIHGCVVSRR 167
                Q  +  FNT++N     G + +  +  Q  + + Y+  D  +Y  LI+G   + +
Sbjct: 117 LKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLF-DQFTYGTLINGLSKNGQ 175

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           ++ A  +  EM K  +QP LV +  LI GLC +  V +AL L   I     +  D   + 
Sbjct: 176 IKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGE-RGILLDAVTYN 234

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           SLI G C+VG       +  +MVR+ ++ D   ++ LI AL K GR  E   +L  M +R
Sbjct: 235 SLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKR 294

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           G KP+ VTYNAL+ G+C  E+   A  + + M  +G + + ++YNV++ G CK
Sbjct: 295 GEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCK 347



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 147/299 (49%), Gaps = 4/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++L+Y+++I    + KM DE   +  +L  +  +VP    + ++I     +  +    ++
Sbjct: 334 DVLNYNVLIDGYCKTKMVDEAMVLFKELC-NKNLVPTIASYNSLIDGLCNSGRISHVKKL 392

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGK-LDRMKELFQIMEKYVSPDACSYNILIHGCVV 164
            DEM        V  +N L++     G+ L+ +  L  +M+K V P+  +YN ++ G  +
Sbjct: 393 LDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCL 452

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +  A  +F+ MVK  L+P ++ +  LI G C    VDEA+ L ++ MR  N+ PD  
Sbjct: 453 RNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKE-MRHKNLIPDIA 511

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SLI GLC +G +     + +EM       D   Y+ L+ A  K    ++  ++ +++
Sbjct: 512 SYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI 571

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            E G  P+  T +A++   CK E  + A   L  +   GC  N  +Y +++  LCKDG 
Sbjct: 572 VE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGS 629



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 141/294 (47%), Gaps = 7/294 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERALQMFD 107
           ++++I  L +     E Q +L  +    R    +I+  N +  G+  R  + E A ++F+
Sbjct: 268 FNILIDALCKEGRILEAQGVLAMMS--KRGEKPDIVTYNALMEGYCSRENVHE-ARELFN 324

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSR 166
            M    ++  V  +N L++       +D    LF ++  K + P   SYN LI G   S 
Sbjct: 325 RMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSG 384

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           R+    K+ DEM      P +VT+  LI  LC E R+ EAL +   +M+   VKP+   +
Sbjct: 385 RISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMK-KGVKPNIVTY 443

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
            +++ G C    +++A  +   MV+  +E D   Y+ LI+   K    +E   + KEM+ 
Sbjct: 444 NAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRH 503

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +   P+  +YN+LI G C          +LDEM D G   + I+YN++L   CK
Sbjct: 504 KNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCK 557



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 4/221 (1%)

Query: 126 NPKLTCG--KLDRMKELFQIMEKYVSPDACS-YNILIHGCVVSRRLEDAWKVFDEMVKRR 182
           NP   C    +D     F  M +   P   S ++ L+   V       A  +F ++  + 
Sbjct: 26  NPHKNCRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKG 85

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
           + P++ TF  LI     +     A  L   I++    +P+   F ++I G C  G +  A
Sbjct: 86  ISPSIATFTILINCYFHQSHTAFAFSLLATILKS-GYQPNLVTFNTIINGFCINGMIFKA 144

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
           L   + ++      D   Y +LI+ L K G+      +L+EM++   +PN V Y+ALI G
Sbjct: 145 LDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDG 204

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            CK+     A  +  ++G++G   + ++YN ++ G C  G+
Sbjct: 205 LCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGR 245



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 127/280 (45%), Gaps = 6/280 (2%)

Query: 46  NLLHYDLIITKLGR-AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +++ Y+++I  L +  ++ + +  ++  +K   +  P  + +  ++  Y     +  A  
Sbjct: 404 DVVTYNILIDALCKEGRILEALGVLVMMMKKGVK--PNIVTYNAMMDGYCLRNNVNVAKD 461

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
           +F+ M    ++  +  +N L+N       +D    LF+ M  K + PD  SYN LI G  
Sbjct: 462 IFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLC 521

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              R+    ++ DEM      P ++T+  L+   C     D+A+ L   I  V  + PD 
Sbjct: 522 NLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI--VEGIWPDF 579

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
               +++  LC   +L +A    + ++      +   Y+ LI+AL K G   E   +L +
Sbjct: 580 YTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSK 639

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           M++    P+++T+  +I    +  + + A  + +EM  +G
Sbjct: 640 MEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARG 679


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 133/263 (50%), Gaps = 2/263 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P E+ F  +I    +   L++A  +  EM+   ++++   +N L+      G L     L
Sbjct: 270 PSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALAL 329

Query: 141 FQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           ++ ++ + VSP   S+N +++G     ++ DA +   +M+K+ L P ++++ TLIYG C 
Sbjct: 330 WEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCR 389

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
              + EA  L ++ +R  N+  +   + +LI GLC +G+L  AL +KE+M+   I  D  
Sbjct: 390 LGNIGEAFILLDE-LRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVV 448

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+ L++   K G          EM   G  P+   Y A I G  K  D   AF + +EM
Sbjct: 449 TYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEM 508

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
             KG   + I+YNV + GLCK G
Sbjct: 509 LTKGFPPDVITYNVFVNGLCKLG 531



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 136/289 (47%), Gaps = 18/289 (6%)

Query: 60  AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL--LERALQMFDEMSSFNVQMT 117
            KM D  QQ+   LK +  ++P  I +  +I  YG  RL  +  A  + DE+   N+   
Sbjct: 356 GKMSDARQQLSDMLKKN--LMPDIISYNTLI--YGFCRLGNIGEAFILLDELRFRNLSFN 411

Query: 118 VKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKV 174
           +  +NTL++     G L+   ++KE   ++ + + PD  +Y +L++G      +  A + 
Sbjct: 412 IVTYNTLIDGLCRLGDLETALKLKE--DMINRGIHPDVVTYTVLVNGACKLGNMLMAKEF 469

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDE---ALKLKEDIMRVYNVKPDGQVFASLIK 231
           FDEM+   L P    +   I G   EL++ +   A KL+E+ M      PD   +   + 
Sbjct: 470 FDEMLHVGLAPDQFAYTARIVG---ELKLGDTAKAFKLQEE-MLTKGFPPDVITYNVFVN 525

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           GLC +G L  A  + ++M+RD    D   Y+S + A  + G   E   I  +M  RG  P
Sbjct: 526 GLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTP 585

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             VTY  LI         + A     EM +KG   N I+YNV++ G CK
Sbjct: 586 TVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCK 634



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 103/208 (49%), Gaps = 6/208 (2%)

Query: 137 MKELFQIMEKYVSPDACS-YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
           MK  + +ME+ +S +     ++LI G +  + L     VF++M++ R  P +     ++ 
Sbjct: 155 MKSAYWVMERIISFEMYGIVDVLIGGYLNYQCL----LVFEKMMRNRFLPDVKNCNRILK 210

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
            L  +  + +AL++   +M  Y ++P    + +++   C  GE+  AL +  +M      
Sbjct: 211 ILRDKNLLVKALEVYR-MMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCY 269

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
                ++ LI+ L K G   +   +++EM + G + +  TYN LI G+CK+     A  +
Sbjct: 270 PSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALAL 329

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
            +EM  +G      S+N I+ G CK+GK
Sbjct: 330 WEEMVTRGVSPTVASHNTIMYGFCKEGK 357



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 94/194 (48%), Gaps = 3/194 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F  +++ Y++ +  L +    +E  ++L ++  D   VP  + + + +  +     L 
Sbjct: 511 KGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGH-VPDHVTYTSFMHAHMENGHLR 569

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILI 159
              ++F +M S     TV  +  L++     G+LD  M    ++ EK V P+  +YN+LI
Sbjct: 570 EGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLI 629

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +G    R+++ A K F EM ++ + P   T+  LI   C   +  EAL+L   ++    +
Sbjct: 630 NGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLG-KRI 688

Query: 220 KPDGQVFASLIKGL 233
           +PD     +L+K L
Sbjct: 689 RPDSCTHGALLKKL 702


>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
 gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
          Length = 495

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 162/367 (44%), Gaps = 50/367 (13%)

Query: 16  KDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 75
           K PKLA ++FK          A   + F + +  Y+  +  L +     + ++I   + +
Sbjct: 15  KSPKLASRVFK---------WAARQEDFEHTVFTYNAYLNALVKGGHGSKARKIFDDMLY 65

Query: 76  DTRIVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
               +P    +  V+ G    A+  + AL++  +M S  +  T    N L++     GK+
Sbjct: 66  K-ECLPNIYTYGIVLRGLCDDAKT-DAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKV 123

Query: 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           D   EL++ +    S D  SYN+L +G   + +++ A  VF EM +  + P+L+T+  L+
Sbjct: 124 DAAYELYKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLL 183

Query: 195 YGLCLELRVDEALKLKEDI------------MRVYNV----------------------- 219
           YG C   R+++A+ L E++            M  YN                        
Sbjct: 184 YGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIK 243

Query: 220 ---KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
               P+   F +L+ GLC  G+L  A  + E MV    E  A  Y+ LI+   +A R ++
Sbjct: 244 SGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDK 303

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
                 +M  RG +PN  TY ALI G C     E A  IL  M   G + N ++Y  ++G
Sbjct: 304 ANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIG 363

Query: 337 GLCKDGK 343
            LCK G+
Sbjct: 364 ALCKGGQ 370



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 125/261 (47%), Gaps = 11/261 (4%)

Query: 93  YG--RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-----E 145
           YG  +A  ++RAL +F EM    V  ++  +N LL      G++++   L + M      
Sbjct: 149 YGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKG 208

Query: 146 KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
             V PD  SYN +I G   +R+L  A  V   M+K    P +VTF TL+ GLCL  ++DE
Sbjct: 209 SDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDE 268

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           A  + E  M   N +P    +  LI G      +  A     +M+R  +E +   Y++LI
Sbjct: 269 ANAMFE-YMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALI 327

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL-DEMGDKG- 323
             L  A +  +   ILK M   G +PN VTY  +I   CK    E A  +  D MG +  
Sbjct: 328 GGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTA 387

Query: 324 -CKANPISYNVILGGLCKDGK 343
            CK +  +Y+ I+  LC+  K
Sbjct: 388 KCKPDSYAYSTIIYWLCRQSK 408



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 146/299 (48%), Gaps = 10/299 (3%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           + Y+++   L +A   D    +  +++ +  +VP  + +  ++  Y RA  +E+A+ + +
Sbjct: 142 ISYNMLTYGLCKADQIDRALAVFGEMEENA-VVPSLLTYNGLLYGYCRAGRMEQAMTLLE 200

Query: 108 EM----SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
           EM       +V   +  +NT+++      +L   + + + M K   SP+  ++N L+ G 
Sbjct: 201 EMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGL 260

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
            ++ +L++A  +F+ MV+R  +PT VT+  LI G    LR+D+A     D++R   V+P+
Sbjct: 261 CLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLR-RGVEPN 319

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + +LI GLC   ++  AL + + M     E +   Y+ +I AL K G+      +  
Sbjct: 320 VYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFN 379

Query: 283 EM---KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           +    +   CKP+S  Y+ +I   C++  F  A+     M +    A P  Y  +  GL
Sbjct: 380 DAMGSRTAKCKPDSYAYSTIIYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMADGL 438


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 152/336 (45%), Gaps = 54/336 (16%)

Query: 60  AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK 119
           A  FD+  +I+ ++      VP +  +  VIGF   A  +E+A  +F+EM    +  +V 
Sbjct: 431 AGKFDKAFEIICEMMSKG-FVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVY 489

Query: 120 FFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
            +  L++     G + + +  F +++    +P+  +Y  LIH  + +R++ DA K+F+ M
Sbjct: 490 TYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMM 549

Query: 179 ------------------------------VKRRLQ---------------------PTL 187
                                         +  R+Q                     P +
Sbjct: 550 LLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNI 609

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           +T+G L+ GLC   RV+EA +L  D M V   +P+  V+ +LI G C  G+L  A  V  
Sbjct: 610 ITYGALVDGLCKANRVEEAHELL-DTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFV 668

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           +M       +   YSSLI++LFK  R +    +L +M E  C PN V Y  +I G CK  
Sbjct: 669 KMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVG 728

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             E A+ ++ +M + GC  N I+Y  ++ G  K GK
Sbjct: 729 KTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGK 764



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 119/273 (43%), Gaps = 12/273 (4%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           VP  + +  ++     A L + A+ + D M S +    V  +  LL+  L  G+L R K 
Sbjct: 269 VPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKR 328

Query: 140 LFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           +  +M  +   P+   +N L+H    SR    A+K+F +M+K   QP  + +   I  +C
Sbjct: 329 ILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSIC 388

Query: 199 L--ELRVDEALKLKEDIMRVYNVKPDGQVF------ASLIKGLCAVGELSLALGVKEEMV 250
              EL   + L+L E   + Y+   D  V       ++  + LC  G+   A  +  EM+
Sbjct: 389 SNEELPGSDLLELAE---KAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMM 445

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
                 D   YS +I  L  A +  +   + +EMK+ G  P+  TY  LI  FCK    +
Sbjct: 446 SKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQ 505

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            A    DEM    C  N ++Y  ++    K  K
Sbjct: 506 QARNWFDEMLRDNCTPNVVTYTSLIHAYLKARK 538



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 141/314 (44%), Gaps = 21/314 (6%)

Query: 46  NLLHY-DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           N++ Y  LI   L   K+FD  +     L   ++  P  + +  +I  + +A  +++A Q
Sbjct: 522 NVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSK--PNVVTYTALIDGHCKAGQIDKACQ 579

Query: 105 MFDEMS----SFNVQMTVKF------------FNTLLNPKLTCGKLDRMKELFQIME-KY 147
           ++  M     S ++ M  K             +  L++      +++   EL   M    
Sbjct: 580 IYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNG 639

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
             P+   Y+ LI G   + +LE+A +VF +M +R   P L T+ +LI  L  E R+D  L
Sbjct: 640 CEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVL 699

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           K+   ++   +  P+  ++  +I GLC VG+   A  +  +M       +   Y+++I  
Sbjct: 700 KVLSKMLE-NSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDG 758

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
             K G+  +   + ++M  +GC PN +TY  LI+  C     + A  +LDEM       +
Sbjct: 759 FGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRH 818

Query: 328 PISYNVILGGLCKD 341
             SY  I+ G  ++
Sbjct: 819 ISSYRKIIEGFNRE 832



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN LI   + + +L+ A+ V  EM     +    T G   Y LC   R  +AL L E  
Sbjct: 207 TYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAGRCGDALSLLEKE 266

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
             V    PD   +  ++ GLC       A+ + + M       +   Y  L+S     G+
Sbjct: 267 EFV----PDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQ 322

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
                 IL  M   GC PN   +N+L+  +CK  D+  A+ +  +M   GC+   + YN+
Sbjct: 323 LGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNI 382

Query: 334 ILGGLCKD 341
            +G +C +
Sbjct: 383 FIGSICSN 390



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 99/245 (40%), Gaps = 44/245 (17%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I  L +    +E  +++ +++ +    P  I +  +I  +G+   +E+ L++
Sbjct: 713 NVVIYTDMIDGLCKVGKTEEAYRLMLKME-EVGCYPNVITYTAMIDGFGKIGKIEQCLEL 771

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACS----------- 154
           + +M S         +  L+N   + G LD    L   M++   P   S           
Sbjct: 772 YRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNR 831

Query: 155 -----------------------YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT-- 189
                                  Y ILI   + + RLE A  + +E+      P+L    
Sbjct: 832 EFITSIGLLDELSENESVPVESLYRILIDNFIKAGRLEGALNLLEEISS---SPSLAVAN 888

Query: 190 ---FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
              + +LI  L    +VD+A +L   ++   NV P+   F  LIKGL  VG+   AL + 
Sbjct: 889 KYLYTSLIESLSHASKVDKAFELYASMIN-KNVVPELSTFVHLIKGLTRVGKWQEALQLS 947

Query: 247 EEMVR 251
           + + +
Sbjct: 948 DSICQ 952



 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 225 VFASLIKGLC--AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
           V+ +LI+ LC  AV    ++     ++  D  E+   + + LI    + G  N     L 
Sbjct: 135 VYNALIELLCCNAVNNDRVSHKFLMQIRDDDRELLRKLLNFLIQKCCRNGMWNVALEELG 194

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            +K+ G K +  TYNALI  F + +  + AF +  EM + G + +  +       LCK G
Sbjct: 195 RLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAG 254

Query: 343 KC 344
           +C
Sbjct: 255 RC 256


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 146/299 (48%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y+ +I        + E  ++  +++  + I+P  + F  ++G   +   ++ A  +
Sbjct: 288 NNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQS-ILPDVVTFNMLMGSLCKYGKIKEARDV 346

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           FD M+       V  +N +LN   T G L  M +LF +M    ++P  C++N+LI     
Sbjct: 347 FDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYAN 406

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L+ A  +F+EM    ++P ++T+ T+I  LC   ++D+A++ K + M    V PD  
Sbjct: 407 CGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAME-KFNQMIDQGVAPDKY 465

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LI+G C  G L  A  +  E++ + + +D  ++SS+I+ L K GR  +   I    
Sbjct: 466 AYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLT 525

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  P +V Y+ L+ G+C     E A  + D M   G + N + Y  ++ G CK G+
Sbjct: 526 VNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGR 584



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 152/302 (50%), Gaps = 13/302 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y++++          +M  +   +  D  I P    F  +I  Y    +L++A+ +
Sbjct: 358 DVFSYNIMLNGYATKGCLVDMTDLFDLMLGDG-IAPVICTFNVLIKAYANCGMLDKAMII 416

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           F+EM    V+  V  + T++      GK+D   E F Q++++ V+PD  +Y+ LI G   
Sbjct: 417 FNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCT 476

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L  A ++  E++   +   +V F ++I  LC   RV +A  + +  + V  + P   
Sbjct: 477 HGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNV-GLHPTAV 535

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           V++ L+ G C VG++  AL V + MV   IE +  +Y +L++   K GR +E  ++ +EM
Sbjct: 536 VYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREM 595

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTI-----LDEMGDKGCKANPISYNVILGGLC 339
            ++G KP+++ YN +I G      FEA  T+       EM + G   N  +Y+++L GL 
Sbjct: 596 LQKGIKPSTILYNIIIDGL-----FEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLF 650

Query: 340 KD 341
           K+
Sbjct: 651 KN 652



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 151/312 (48%), Gaps = 8/312 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF-CNVIG 91
           N+   H +KP   N+L Y  +I  L R    D+  +  +Q+  D  + P +  + C + G
Sbjct: 418 NEMRDHGVKP---NVLTYTTVIAALCRIGKMDDAMEKFNQMI-DQGVAPDKYAYHCLIQG 473

Query: 92  FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSP 150
           F     LL +A ++  E+ +  + + +  F++++N     G++   + +F +     + P
Sbjct: 474 FCTHGSLL-KAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHP 532

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
            A  Y++L+ G  +  ++E A +VFD MV   ++P  V +GTL+ G C   R+DE L L 
Sbjct: 533 TAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLF 592

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
            ++++   +KP   ++  +I GL   G    A     EM    I M+   YS ++  LFK
Sbjct: 593 REMLQ-KGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFK 651

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
               +E   + KE++    K + +T N +I+G  +    E A  +   +   G     ++
Sbjct: 652 NRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVT 711

Query: 331 YNVILGGLCKDG 342
           Y++++  L K+G
Sbjct: 712 YSIMITNLIKEG 723



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 140/290 (48%), Gaps = 3/290 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++++I       M D+   I ++++ D  + P  + +  VI    R   ++ A++ F++M
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMR-DHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQM 455

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
               V      ++ L+    T G L + KEL  +IM   +  D   ++ +I+      R+
Sbjct: 456 IDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRV 515

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            DA  +FD  V   L PT V +  L+ G CL  ++++AL++  D M    ++P+  V+ +
Sbjct: 516 MDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVF-DAMVSAGIEPNDVVYGT 574

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ G C +G +   L +  EM++  I+    +Y+ +I  LF+AGR         EM E G
Sbjct: 575 LVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG 634

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
              N  TY+ ++ G  K   F+ A  +  E+     K + I+ N ++ G+
Sbjct: 635 IAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGM 684



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 109/235 (46%), Gaps = 37/235 (15%)

Query: 146 KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
           + +SP + +Y IL+  C  + R E A   F ++++  L+  ++    L+ G C   R DE
Sbjct: 105 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDE 164

Query: 206 ALKL--------------------------------KEDIMRVYN-----VKPDGQVFAS 228
           AL +                                 +D++R+         PD   + +
Sbjct: 165 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNT 224

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I G    G+++ A  + +EMV+  I  D   YSS++ AL KA   ++  A L++M  +G
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKG 284

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             PN+ TYN LI G+     ++ A  +  EM  +    + +++N+++G LCK GK
Sbjct: 285 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGK 339



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 136/308 (44%), Gaps = 14/308 (4%)

Query: 46  NLLHYDLII--------TKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           N +H D+++         KLGR     + Q I   L  +  + P  +++  ++  Y    
Sbjct: 493 NGMHLDIVLFSSIINNLCKLGRVM---DAQNIF-DLTVNVGLHPTAVVYSMLMDGYCLVG 548

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYN 156
            +E+AL++FD M S  ++     + TL+N     G++D    LF ++++K + P    YN
Sbjct: 549 KMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYN 608

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
           I+I G   + R   A   F EM +  +     T+  ++ GL      DEA+ L ++ +R 
Sbjct: 609 IIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKE-LRA 667

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
            NVK D     ++I G+     +  A  +   + R  +      YS +I+ L K G   E
Sbjct: 668 MNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEE 727

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +   M+  GC+P+S   N ++    K+ +   A   L ++ ++      ++  +++ 
Sbjct: 728 AEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVD 787

Query: 337 GLCKDGKC 344
                G C
Sbjct: 788 LFSSKGTC 795



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 109/253 (43%), Gaps = 7/253 (2%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE--LFQIMEKYVSPDA 152
           RA   E AL  F ++    +++ +   N LL       + D   +  L +  E    PD 
Sbjct: 123 RAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDV 182

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVK--RRLQPTLVTFGTLIYGLCLELRVDEALKL- 209
            SY+IL+       +   A  +   M +      P +V + T+I G   E  V++A  L 
Sbjct: 183 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLF 242

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
           KE + R   + PD   ++S++  LC    +  A     +MV   +  +   Y++LI    
Sbjct: 243 KEMVQR--GIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYS 300

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
             G+  E   + KEM+ +   P+ VT+N L+   CK    + A  + D M  KG   +  
Sbjct: 301 STGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 360

Query: 330 SYNVILGGLCKDG 342
           SYN++L G    G
Sbjct: 361 SYNIMLNGYATKG 373


>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 549

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 141/298 (47%), Gaps = 2/298 (0%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           +R++   Y+ ++  LG+ K FD M  ++ Q+     +V    +   +    G +R  + A
Sbjct: 156 YRHSADSYNSMVDILGKFKQFDLMWGLISQMDEIGGLVSLATMTKVMRRLAGASRWTD-A 214

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGC 162
           +  F++M  F V       N LL+       + R +  FQ +   V PD  S+N L+HG 
Sbjct: 215 IDAFNKMDQFGVVKDTTAMNVLLDTLCKERSVKRARGAFQELRGSVPPDESSFNTLVHGW 274

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             +R + +A  +  EM +   +P+++T+ +LI   C+E        +  + MR     P+
Sbjct: 275 CKARMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNE-MRSKGCPPN 333

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              +  ++  L   G    AL + +++  D    DA  Y+SLI  L +AGR  +  +++ 
Sbjct: 334 VITYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLIYILGRAGRLEDANSVVD 393

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +M+  G +P   T+N LIS  C     E A  +L +M ++ CK +  +Y  +L   CK
Sbjct: 394 KMRMTGVRPTVATFNTLISAACDHSQAENALKMLVKMEEQSCKPDIKTYTPLLKLCCK 451



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 95/192 (49%), Gaps = 2/192 (1%)

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
           A SYN ++      ++ +  W +  +M +     +L T   ++  L    R  +A+    
Sbjct: 160 ADSYNSMVDILGKFKQFDLMWGLISQMDEIGGLVSLATMTKVMRRLAGASRWTDAID-AF 218

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           + M  + V  D      L+  LC    +  A G  +E+ R  +  D   +++L+    KA
Sbjct: 219 NKMDQFGVVKDTTAMNVLLDTLCKERSVKRARGAFQEL-RGSVPPDESSFNTLVHGWCKA 277

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
              NE   ++KEM+E G KP+ +TY +LI  +C E+DF+  + IL+EM  KGC  N I+Y
Sbjct: 278 RMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPPNVITY 337

Query: 332 NVILGGLCKDGK 343
            +++  L K G+
Sbjct: 338 TIVMHALGKAGR 349


>gi|302833221|ref|XP_002948174.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
 gi|300266394|gb|EFJ50581.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
          Length = 1001

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 152/322 (47%), Gaps = 22/322 (6%)

Query: 31  NPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI 90
            PN+    PL    +  LH+DL  ++LG+ +   E+   L      + +       C+V 
Sbjct: 96  QPNE----PLPEVIFRALHHDL--SRLGKDRRAMELFDWLRSANERSPLR----ALCDVY 145

Query: 91  GFYGRARL------LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM 144
            +     L      ++RAL++  EM S N++  V  +  L+N  + CGKL    +++  M
Sbjct: 146 SYTATISLCIHGQDVDRALELMQEMRSRNIERNVHTYTALMNVCIKCGKLPLALDIYNSM 205

Query: 145 EKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG--LCLEL 201
                 P+  +YN L+       + E A  V D M    ++P L T+ TLI    +C + 
Sbjct: 206 RAVNCMPNVVTYNTLVDVYGKLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQP 265

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
           R  EAL + + ++      P+   + +LI       +L  AL V +EM+R  ++     Y
Sbjct: 266 R--EALAVYQRLLS-DGFTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITY 322

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           SSLISA  KAG+      I  EM++  C PN+VTYN+L++   +   +E A  + ++M  
Sbjct: 323 SSLISACEKAGQWETALRIFNEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNA 382

Query: 322 KGCKANPISYNVILGGLCKDGK 343
            GC  + ++Y  ++    + G+
Sbjct: 383 HGCTPDVVTYTALISAYERGGQ 404


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 153/302 (50%), Gaps = 5/302 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV-PKEIIFCNVIGFYGRARLLERA 102
           +++ + Y  +I   G  K+ D    I    K D R+  P   ++  +I    + +L+  A
Sbjct: 161 KFDQVSYGTLIN--GVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEA 218

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHG 161
             +F EM++  +   V  + TL+       KL + +  L +++ K ++P+  +YNIL+  
Sbjct: 219 YGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDA 278

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                ++++A  V   M+K  ++P ++T+ TL+ G  L   + +A  +  + M +  V P
Sbjct: 279 LCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHV-FNAMSLMGVTP 337

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   +  LI G C    +  AL + +EM +  +      YSSLI  L K+GR +    ++
Sbjct: 338 DVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLI 397

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM++RG   N +TYN+LI G CK    + A  + ++M D+G +    ++ ++L GLCK 
Sbjct: 398 DEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKG 457

Query: 342 GK 343
           G+
Sbjct: 458 GR 459



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 142/298 (47%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y+ II  L + ++  E   +  ++     I    + +  +I  +  A  L+ A+ +
Sbjct: 198 NVEMYNTIIDALCKYQLVSEAYGLFSEMTAKG-ISADVVTYTTLIYGFCIASKLKEAIGL 256

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            +EM    +   V  +N L++     GK+   K +  +M K  V PD  +Y+ L+ G  +
Sbjct: 257 LNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFL 316

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              L+ A  VF+ M    + P + ++  LI G C    VDEAL L ++ M   N+ P   
Sbjct: 317 VYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKE-MHQKNMVPGIV 375

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++SLI GLC  G +S    + +EM    I  +   Y+SLI  L K G  +   A+  +M
Sbjct: 376 TYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKM 435

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           K++G +P S T+  L+ G CK    + A     ++  KG   +   YNV++ G CK G
Sbjct: 436 KDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQG 493



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 16/248 (6%)

Query: 107 DEMSSFNVQMTVKF------FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
           D +S FN  + ++       FN +L+             L   +E K + PD  + NILI
Sbjct: 42  DAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILI 101

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +      ++   + V  +++KR  QP  +TF TLI GLCL+ +V++AL   + ++    +
Sbjct: 102 NCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLL-AQGI 160

Query: 220 KPDGQVFASLIKGLCAVGE----LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
           K D   + +LI G+C +G+    + L   +   + +  +EM    Y+++I AL K    +
Sbjct: 161 KFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEM----YNTIIDALCKYQLVS 216

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E   +  EM  +G   + VTY  LI GFC     + A  +L+EM  K    N  +YN+++
Sbjct: 217 EAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILV 276

Query: 336 GGLCKDGK 343
             LCK+GK
Sbjct: 277 DALCKEGK 284



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 137/285 (48%), Gaps = 3/285 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LK    N+  Y++++  L +     E + +L  +     + P  I +  ++  Y     L
Sbjct: 262 LKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKAC-VKPDVITYSTLMDGYFLVYEL 320

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           ++A  +F+ MS   V   V  +  L+N       +D    LF+ M +K + P   +Y+ L
Sbjct: 321 KKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSL 380

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   S R+   W + DEM  R +   ++T+ +LI GLC    +D A+ L    M+   
Sbjct: 381 IDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNK-MKDQG 439

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           ++P    F  L+ GLC  G L  A    ++++     +D   Y+ +I+   K G   E  
Sbjct: 440 IRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEAL 499

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
            +L +M+E GC PN+VT++ +I+   K+++ + A  +L +M  +G
Sbjct: 500 TMLSKMEENGCVPNAVTFDIIINALFKKDENDKAEKLLRQMICRG 544


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 123/242 (50%), Gaps = 2/242 (0%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNIL 158
           +   Q+  +M   NV      FN L++     G++   + +  +M K    PD  +YN L
Sbjct: 247 QEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNAL 306

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           + G      + +A ++F+ MVKR L+P ++ +  LI G C    VDEA+ L +++    N
Sbjct: 307 MEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCN-KN 365

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           + P    + SLI GLC  G +S    + +EM       D   Y+ LI AL K GR  E  
Sbjct: 366 LVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEAL 425

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +L  M ++G KPN VTYNA++ G+C   +   A  I + M   G + + ++YNV++ G 
Sbjct: 426 GVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGY 485

Query: 339 CK 340
           CK
Sbjct: 486 CK 487



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 139/292 (47%), Gaps = 3/292 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           +D ++  + R   +     +  QL+    I P    F  +I  Y        A  +   +
Sbjct: 58  FDKLLGAIVRMGHYPTAISLFTQLQ-SKGISPSIATFTILINCYFHQSHTAFAFSLLATI 116

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRL 168
                Q  +  FNT++N     G + +  +  Q ++ +    D  +Y  LI+G   + ++
Sbjct: 117 LKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQI 176

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A  +  EM K  +QP LV +  LI GLC +  V +AL L   I     +  D   + S
Sbjct: 177 KAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGE-RGILLDAVTYNS 235

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G C+VG       +  +MVR+ ++ D   ++ LI AL K GR  E   +L  M +RG
Sbjct: 236 LIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRG 295

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            KP+ VTYNAL+ G+C  E+   A  + + M  +G + + ++YNV++ G CK
Sbjct: 296 EKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCK 347



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 147/299 (49%), Gaps = 4/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++L+Y+++I    + KM DE   +  +L  +  +VP    + ++I     +  +    ++
Sbjct: 334 DVLNYNVLIDGYCKTKMVDEAMVLFKEL-CNKNLVPTIASYNSLIDGLCNSGRISHVKKL 392

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGK-LDRMKELFQIMEKYVSPDACSYNILIHGCVV 164
            DEM        V  +N L++     G+ L+ +  L  +M+K V P+  +YN ++ G  +
Sbjct: 393 LDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCL 452

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +  A  +F+ MVK  L+P ++ +  LI G C    VDEA+ L ++ MR  N+ PD  
Sbjct: 453 RNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKE-MRHKNLIPDIA 511

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SLI GLC +G +     + +EM       D   Y+ L+ A  K    ++  ++ +++
Sbjct: 512 SYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI 571

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            E G  P+  T +A++   CK E  + A   L  +   GC  N  +Y +++  LCKDG 
Sbjct: 572 VE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGS 629



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 141/294 (47%), Gaps = 7/294 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERALQMFD 107
           ++++I  L +     E Q +L  +    R    +I+  N +  G+  R  + E A ++F+
Sbjct: 268 FNILIDALCKEGRILEAQGVLAMMSK--RGEKPDIVTYNALMEGYCSRENVHE-ARELFN 324

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSR 166
            M    ++  V  +N L++       +D    LF ++  K + P   SYN LI G   S 
Sbjct: 325 RMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSG 384

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           R+    K+ DEM      P +VT+  LI  LC E R+ EAL +   +M+   VKP+   +
Sbjct: 385 RISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMK-KGVKPNIVTY 443

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
            +++ G C    +++A  +   MV+  +E D   Y+ LI+   K    +E   + KEM+ 
Sbjct: 444 NAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRH 503

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +   P+  +YN+LI G C          +LDEM D G   + I+YN++L   CK
Sbjct: 504 KNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCK 557



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 4/221 (1%)

Query: 126 NPKLTCG--KLDRMKELFQIMEKYVSPDACS-YNILIHGCVVSRRLEDAWKVFDEMVKRR 182
           NP   C    +D     F  M +   P   S ++ L+   V       A  +F ++  + 
Sbjct: 26  NPHKNCRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKG 85

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
           + P++ TF  LI     +     A  L   I++    +P+   F ++I G C  G +  A
Sbjct: 86  ISPSIATFTILINCYFHQSHTAFAFSLLATILKS-GYQPNLVTFNTIINGFCINGMIFKA 144

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
           L   + ++      D   Y +LI+ L K G+      +L+EM++   +PN V Y+ALI G
Sbjct: 145 LDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDG 204

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            CK+     A  +  ++G++G   + ++YN ++ G C  G+
Sbjct: 205 LCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGR 245



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 127/280 (45%), Gaps = 6/280 (2%)

Query: 46  NLLHYDLIITKLGR-AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +++ Y+++I  L +  ++ + +  ++  +K   +  P  + +  ++  Y     +  A  
Sbjct: 404 DVVTYNILIDALCKEGRILEALGVLVMMMKKGVK--PNIVTYNAMMDGYCLRNNVNVAKD 461

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
           +F+ M    ++  +  +N L+N       +D    LF+ M  K + PD  SYN LI G  
Sbjct: 462 IFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLC 521

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              R+    ++ DEM      P ++T+  L+   C     D+A+ L   I  V  + PD 
Sbjct: 522 NLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI--VEGIWPDF 579

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
               +++  LC   +L +A    + ++      +   Y+ LI+AL K G   E   +L +
Sbjct: 580 YTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSK 639

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           M++    P+++T+  +I    +  + + A  + +EM  +G
Sbjct: 640 MEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARG 679


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 148/299 (49%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+++++ L R    DE + ++ ++   + ++P    +  +     R    +  L +
Sbjct: 263 NVVTYNVLLSGLCRTGRMDETRALMDEMASHS-MLPDGFTYSILFDGLTRTGESQTMLSL 321

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F E     V +     + LLN     GK+ + K++F+++    + P    YN LI+G   
Sbjct: 322 FAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQ 381

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            R L  A+ +F++M  R ++P  +T+  LI GLC    V +A  L  + M    V P  +
Sbjct: 382 VRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVME-MEKSGVDPSVE 440

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI      G+L     V  +M +  I+ D   + S++ A  K G+  E  AIL +M
Sbjct: 441 TFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDM 500

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +   PN+  YN++I  + +  D E A  ++++M + G  A+ ++YN++L GLC+  +
Sbjct: 501 IYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQ 559



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 118/221 (53%), Gaps = 2/221 (0%)

Query: 121 FNTLLNPKLTCGK-LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +N ++      GK  D +K   ++++  V+P+  +YN +I G V    LE  +++ D+M+
Sbjct: 197 YNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQML 256

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
               +P +VT+  L+ GLC   R+DE   L ++ M  +++ PDG  ++ L  GL   GE 
Sbjct: 257 HDGPKPNVVTYNVLLSGLCRTGRMDETRALMDE-MASHSMLPDGFTYSILFDGLTRTGES 315

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
              L +  E ++  + + A   S L++ L K G+  +   + + +   G  P +V YN L
Sbjct: 316 QTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTL 375

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           I+G+C+  D   AF I ++M  +  + + I+YN ++ GLCK
Sbjct: 376 INGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCK 416



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 146/310 (47%), Gaps = 12/310 (3%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRA--KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYG 94
           A P   F YN++   L  +  G    K+FDEM         D  + P  I +  +I  + 
Sbjct: 189 APPPDAFSYNVVIAGLWRSGKGSDALKVFDEMV--------DMGVAPNRITYNTMIDGHV 240

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDAC 153
           +   LE   ++ D+M     +  V  +N LL+     G++D  + L   M  + + PD  
Sbjct: 241 KGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGF 300

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +Y+IL  G   +   +    +F E +K+ +     T   L+ GLC + +V +A ++ E +
Sbjct: 301 TYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEML 360

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           +    + P   ++ +LI G C V +L  A  + E+M    I  D   Y++LI+ L K   
Sbjct: 361 VHT-GLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEM 419

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             +   ++ EM++ G  P+  T+N LI  +      E  FT+L +M  KG K++ IS+  
Sbjct: 420 VTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGS 479

Query: 334 ILGGLCKDGK 343
           ++   CK+GK
Sbjct: 480 VVKAFCKNGK 489



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 141/278 (50%), Gaps = 3/278 (1%)

Query: 67  QQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126
           +Q+   L H T +VP  +I+  +I  Y + R L  A  +F++M S +++     +N L+N
Sbjct: 354 KQVFEMLVH-TGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALIN 412

Query: 127 PKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
                  + + ++L   MEK  V P   ++N LI     + +LE  + V  +M ++ ++ 
Sbjct: 413 GLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKS 472

Query: 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
            +++FG+++   C   ++ EA+ + +D M   +V P+ QV+ S+I      G+   AL +
Sbjct: 473 DVISFGSVVKAFCKNGKIPEAVAILDD-MIYKDVAPNAQVYNSIIDAYIESGDTEQALLL 531

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
            E+M    +      Y+ L+  L ++ + +E   ++  ++ +G +P+ V+YN +IS  C 
Sbjct: 532 VEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCN 591

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + D + A  +L EM   G +    + + ++  L   G+
Sbjct: 592 KGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGR 629



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 140/284 (49%), Gaps = 3/284 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +  R + + Y+ +I  L + +M  + + ++ +++  + + P    F  +I  YG A  LE
Sbjct: 398 RHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEK-SGVDPSVETFNTLIDAYGTAGQLE 456

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILI 159
           +   +  +M    ++  V  F +++      GK+ + +  L  ++ K V+P+A  YN +I
Sbjct: 457 KCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSII 516

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
              + S   E A  + ++M    +  ++VT+  L+ GLC   ++DEA +L    +R   +
Sbjct: 517 DAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIY-TLRNQGL 575

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +PD   + ++I   C  G+   AL + +EM +  I        +L+SAL  AGR ++   
Sbjct: 576 RPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMEC 635

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           + ++M  +  +P+S  Y  ++  + + E+     ++  EM +KG
Sbjct: 636 LYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKG 679



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 72/128 (56%), Gaps = 2/128 (1%)

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM--DAGIYSSLISALFKAGRKN 275
             +PD   +  +++   A G+L +AL +   M R +     DA  Y+ +I+ L+++G+ +
Sbjct: 152 GARPDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGS 211

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +   +  EM + G  PN +TYN +I G  K  D EA F + D+M   G K N ++YNV+L
Sbjct: 212 DALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLL 271

Query: 336 GGLCKDGK 343
            GLC+ G+
Sbjct: 272 SGLCRTGR 279



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 1/195 (0%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P   S N+L+   +   R  D    F  +V    +P    +  ++        +D AL +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 210 KEDIMRVYNVKP-DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
              + R     P D   +  +I GL   G+ S AL V +EMV   +  +   Y+++I   
Sbjct: 180 LRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGH 239

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K G       +  +M   G KPN VTYN L+SG C+    +    ++DEM       + 
Sbjct: 240 VKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDG 299

Query: 329 ISYNVILGGLCKDGK 343
            +Y+++  GL + G+
Sbjct: 300 FTYSILFDGLTRTGE 314


>gi|255660886|gb|ACU25612.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 484

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 165/325 (50%), Gaps = 15/325 (4%)

Query: 31  NPNDTEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVP 81
           + + T  H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +  
Sbjct: 20  HSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEW 78

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
            E ++  +I  YG+  +++ +++MF +M    V+ T+K +N L    L  G+    K  F
Sbjct: 79  DEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYF 138

Query: 142 -QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
            +++ + + P   ++N++I G  +S ++E A + F++M  R + P +VT+ T+I G    
Sbjct: 139 NKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRV 198

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            +++EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  
Sbjct: 199 KKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAIT 257

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDE 318
           YS+L+  L  A + +E   ILKEM ++   P  NS+ +  LIS  CK  + +AA  +L  
Sbjct: 258 YSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSI-FMRLISSHCKSGNLDAAADVLKA 316

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M           Y  ++   CK G+
Sbjct: 317 MIRLSVPTEAGHYGXLIENFCKXGQ 341



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 129/263 (49%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F++M S  +   V  +NT++N      K++  ++ F  M+ + 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   +++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + +++M  Y    D  +F  LI   C  G L  A  V + M+R  +  +AG Y  LI  
Sbjct: 276 VILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             K G+ ++   +L ++ E+    +P S        YN +I   C       A T++ ++
Sbjct: 336 FCKXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQXXKAETLVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +P + N ++ G  ++G
Sbjct: 396 XKLGVQ-DPTALNTLIRGHSQEG 417



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 123/285 (43%), Gaps = 45/285 (15%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + +  +I  Y R + +E A + F EM   N++ TV  + TL+   ++  ++D   
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT-FGTLIYG 196
            L + M+ + + P+A +Y+ L+ G   + ++ +A  +  EM+ + L PT  + F  LI  
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI-- 254
            C    +D A  + + ++R+ +V  +   +  LI+  C  G+   A+ + ++++   I  
Sbjct: 301 HCKSGNLDAAADVLKAMIRL-SVPTEAGHYGXLIENFCKXGQYDKAVKLLDKLIEKDIIL 359

Query: 255 ------EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK-----------------P 291
                  ++   Y+ +I  L   G+  +   +++++ + G +                 P
Sbjct: 360 RPQSTLHLEPSAYNPMIEYLCNNGQXXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSP 419

Query: 292 NSV-----------------TYNALISGFCKEEDFEAAFTILDEM 319
           +S                   YN+L+    K+ +   A   LD M
Sbjct: 420 DSAFELLKIMLRRKVBSEKSAYNSLVQSXLKKNEPXDAKAALDSM 464



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 128/313 (40%), Gaps = 47/313 (15%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D ++  + P   +++ Y+ +I    R K  +E ++   ++K    I P  + +  +I  Y
Sbjct: 175 DMKSREISP---DVVTYNTMINGYYRVKKMEEAEKYFVEMK-GRNIEPTVVTYTTLIKGY 230

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSP-D 151
                ++ AL++ +EM  F ++     ++TLL       K+   + +  ++M+KY++P D
Sbjct: 231 VSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-- 209
              +  LI     S  L+ A  V   M++  +      +G LI   C   + D+A+KL  
Sbjct: 291 NSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFCKXGQYDKAVKLLD 350

Query: 210 ----KEDIMR---VYNVKP--------------------------------DGQVFASLI 230
               K+ I+R     +++P                                D     +LI
Sbjct: 351 KLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQXXKAETLVRQLXKLGVQDPTALNTLI 410

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
           +G    G    A  + + M+R K++ +   Y+SL+ +  K     +  A L  M E    
Sbjct: 411 RGHSQEGSPDSAFELLKIMLRRKVBSEKSAYNSLVQSXLKKNEPXDAKAALDSMIENDHL 470

Query: 291 PNSVTYNALISGF 303
           P+S  + +++   
Sbjct: 471 PDSALFRSVMESL 483


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 140/301 (46%), Gaps = 3/301 (0%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R N + Y  +I  L  A    E  +   +++ D            V       R LE AL
Sbjct: 252 RRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELE-AL 310

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGC 162
            +F EM     +  V  +  L++     G++D  +K L +++EK V+P    +N LI   
Sbjct: 311 SLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSY 370

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
                +EDA  V   M  +++ P + T+  LI G C    +D A+ L   ++    + PD
Sbjct: 371 CKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVES-KLSPD 429

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + +LI GLC VG +  A  +   M+RD    D   +++ +  L + GR  E   IL+
Sbjct: 430 VVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILE 489

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            +KE+  K N   Y ALI G+CK    E A ++   M  + C  N I++NV++ GL K+G
Sbjct: 490 SLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEG 549

Query: 343 K 343
           K
Sbjct: 550 K 550



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 149/299 (49%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y ++I  L +    DE  ++L+++  +  + P  + F  +IG Y +  ++E A+ +
Sbjct: 324 NVYTYTVLIDYLCKEGRMDEALKMLNEMV-EKGVAPSVVPFNALIGSYCKRGMMEDAVGV 382

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVV 164
              M S  V   V+ +N L+        +DR M  L +++E  +SPD  +YN LIHG   
Sbjct: 383 LGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCE 442

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              ++ A ++F  M++    P   TF   +  LC   RV EA ++ E  ++  +VK +  
Sbjct: 443 VGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILES-LKEKHVKANEH 501

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G C  G++  A  + + M+ ++   ++  ++ +I  L K G+  +   ++++M
Sbjct: 502 AYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDM 561

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +   KP   TYN L+    KE DF+ A  IL+ +   G + N ++Y   +   C  G+
Sbjct: 562 AKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGR 620



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 151/367 (41%), Gaps = 44/367 (11%)

Query: 2   PTSSIRLACLPRLQKDPKLAL-----------QLFKNPNPNPNDTEAHPLKPFRYNLLHY 50
           PT    +   PR +KDP L              LF N NP+P       L  FR+   H+
Sbjct: 26  PTQIFTILSRPRWRKDPSLKTLIPSLTPSLLCSLF-NLNPDP----LTALNFFRWIRRHH 80

Query: 51  DL---------IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLER 101
           +          ++  L R +     + + + +              N++      R +  
Sbjct: 81  NFPHSLATHHSLLLLLVRHRTLRAAENVRNSMIKSCTSPHDATFLLNLL------RRMNT 134

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM----EKYVSPDACSYNI 157
           A    D       ++++  +N LL        +D M  L++ M       V P+  + N 
Sbjct: 135 AAAAADHQHQLAFKLSLTSYNRLLMCLSRFSMVDEMISLYKEMLTDNGNSVFPNLITLNT 194

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +++       +  A   F  +++    P L T+ +L+ G C    V+ A         V+
Sbjct: 195 MLNSYCKLGNMAVARLFFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACG-------VF 247

Query: 218 NVKP--DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
            V P  +   + +LI GLC  G+L  AL     M  D        Y+ L+ AL ++GR+ 
Sbjct: 248 CVMPRRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGREL 307

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E  ++  EM+ERGC+PN  TY  LI   CKE   + A  +L+EM +KG   + + +N ++
Sbjct: 308 EALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALI 367

Query: 336 GGLCKDG 342
           G  CK G
Sbjct: 368 GSYCKRG 374



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 137/335 (40%), Gaps = 39/335 (11%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
             P ++    + + + ++GR     E  QIL  LK +  +   E  +  +I  Y +A  +
Sbjct: 461 FSPDQWTFNAFMVCLCRMGRV---GEAHQILESLK-EKHVKANEHAYTALIDGYCKAGKI 516

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
           E A  +F  M +         FN +++     GK+     L + M K+ V P   +YNIL
Sbjct: 517 EHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNIL 576

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           +   +     + A ++ + ++    QP +VT+   I   C + R++EA   +E ++++ N
Sbjct: 577 VEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEA---EEMVIKIKN 633

Query: 219 --VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             V  D  ++  LI     +G L  A GV   M     E     YS L+  L     K E
Sbjct: 634 EGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKE 693

Query: 277 -----------------------------FPAILKEMKERGCKPNSVTYNALISGFCKEE 307
                                           + ++M E GC PN  TY+ LI+G CK  
Sbjct: 694 GSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVG 753

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
               AF++   M + G   + I +N +L   CK G
Sbjct: 754 RLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLG 788



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 147/332 (44%), Gaps = 40/332 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I  L    + D   ++   +  D    P +  F   +    R   +  A Q+
Sbjct: 429 DVVTYNTLIHGLCEVGVVDSASRLFRLMIRDG-FSPDQWTFNAFMVCLCRMGRVGEAHQI 487

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
            + +   +V+     +  L++     GK++    LF+ ++ +   P++ ++N++I G   
Sbjct: 488 LESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRK 547

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +++DA  + ++M K  ++PTL T+  L+  +  E   D A ++   ++     +P+  
Sbjct: 548 EGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISS-GYQPNVV 606

Query: 225 VFASLIKGLCAVGELSLALGVKEEMV----RDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
            + + IK  C+ G L  A    EEMV     + + +D+ IY+ LI+A    G  +    +
Sbjct: 607 TYTAFIKAYCSQGRLEEA----EEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGV 662

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEE-----------------------------DFEA 311
           L+ M   GC+P+ +TY+ L+     E+                             DF  
Sbjct: 663 LRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGI 722

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              + ++M + GC  N  +Y+ ++ GLCK G+
Sbjct: 723 TTVLFEKMAECGCVPNLNTYSKLINGLCKVGR 754



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 108/241 (44%), Gaps = 8/241 (3%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNI 157
            +RA ++ + + S   Q  V  +   +    + G+L+  +E+  +I  + V  D+  YN+
Sbjct: 586 FDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNL 645

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+       L+ A+ V   M     +P+ +T+  L+  L +E    E        + + 
Sbjct: 646 LINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLT 705

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N+  D     S I       +  +   + E+M       +   YS LI+ L K GR N  
Sbjct: 706 NISVDNTDIWSKI-------DFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVA 758

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            ++   M+E G  P+ + +N+L+S  CK   F  A T+LD M +    A+  SY +++ G
Sbjct: 759 FSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLICG 818

Query: 338 L 338
           L
Sbjct: 819 L 819



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 121/316 (38%), Gaps = 67/316 (21%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y++++ ++ +   FD   +IL++L   +   P  + +   I  Y     LE A +M  ++
Sbjct: 573 YNILVEEVLKEYDFDRANEILNRLI-SSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKI 631

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168
            +  V +    +N L+N     G LD     L ++      P   +Y+IL+   V+ +  
Sbjct: 632 KNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHK 691

Query: 169 E--------------------DAWK---------VFDEMVKRRLQPTLVTFGTLIYGLCL 199
           +                    D W          +F++M +    P L T+  LI GLC 
Sbjct: 692 KEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCK 751

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL---------------- 243
             R++ A  L    MR   + P   +  SL+   C +G    A+                
Sbjct: 752 VGRLNVAFSLYHH-MREGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLE 810

Query: 244 -------GVKEEMVRDKIEM------------DAGIYSSLISALFKAGRKNEFPAILKEM 284
                  G+ E+M ++K E             D   +  LI  L K G  ++   +L  M
Sbjct: 811 SYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAKTGYVDQCSELLNLM 870

Query: 285 KERGCKPNSVTYNALI 300
           ++ GC+ +  TY+ L+
Sbjct: 871 EKNGCRLHPETYSMLM 886


>gi|326522248|dbj|BAK07586.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 548

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 138/264 (52%), Gaps = 6/264 (2%)

Query: 83  EIIFCNVI--GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           +++ CN++  G  G  R L+ AL++ DEM  + +   V  + T+L+       L   ++L
Sbjct: 204 DLVSCNILLKGLVG-VRDLDAALKVLDEMPGWGIVPDVVTYTTVLSAYCAKEDLKGAQKL 262

Query: 141 FQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F  I+     PD   Y +LI G   + +++DA ++ DEM    +QP  VT+  +I   C 
Sbjct: 263 FDDIIAGGRVPDVTMYTVLIDGYCRTGKIQDAARIMDEMEAAGVQPNEVTYSVVIEACCK 322

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E +  EA  L  +++   +  PD  + A ++  +C  G+   A  +   MV+  +  D  
Sbjct: 323 EGKSAEACNLMREMLGAGHT-PDTPLAAKVVDVMCQDGKAEEAHQMWRWMVKKNVPPDNT 381

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           I ++LI  L K+G   E   +  E+ E+G KP+ +TYN+LISG C+  + + A  + D+M
Sbjct: 382 ITNTLIYWLCKSGMVREARKLFDEL-EKGYKPSLLTYNSLISGLCENGELQEAGKVWDDM 440

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
            ++  + N ++Y  ++ G CK GK
Sbjct: 441 VERRYEPNAMTYEALIKGFCKIGK 464



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 129/278 (46%), Gaps = 41/278 (14%)

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYNILIHG 161
           ++F  + SFN   +V+ FN LL+  +   +L     LF+      Y++PD  S NIL+ G
Sbjct: 155 RLFLSLPSFNSHPSVRSFNALLHSLVAARRLRLAAALFRAAPTKLYITPDLVSCNILLKG 214

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
            V  R L+ A KV DEM    + P +VT+ T++   C +  +  A KL +DI+    V P
Sbjct: 215 LVGVRDLDAALKVLDEMPGWGIVPDVVTYTTVLSAYCAKEDLKGAQKLFDDIIAGGRV-P 273

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D  ++  LI G C  G++  A  + +EM    ++ +   YS +I A  K G+  E   ++
Sbjct: 274 DVTMYTVLIDGYCRTGKIQDAARIMDEMEAAGVQPNEVTYSVVIEACCKEGKSAEACNLM 333

Query: 282 KEMKERGCKP------------------------------------NSVTYNALISGFCK 305
           +EM   G  P                                    N++T N LI   CK
Sbjct: 334 REMLGAGHTPDTPLAAKVVDVMCQDGKAEEAHQMWRWMVKKNVPPDNTIT-NTLIYWLCK 392

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
                 A  + DE+ +KG K + ++YN ++ GLC++G+
Sbjct: 393 SGMVREARKLFDEL-EKGYKPSLLTYNSLISGLCENGE 429



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 130/296 (43%), Gaps = 39/296 (13%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+  ++++  L   +  D   ++L ++     IVP  + +  V+  Y     L+ A ++
Sbjct: 204 DLVSCNILLKGLVGVRDLDAALKVLDEMP-GWGIVPDVVTYTTVLSAYCAKEDLKGAQKL 262

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC-- 162
           FD++ +      V  +  L++     GK+     +   ME   V P+  +Y+++I  C  
Sbjct: 263 FDDIIAGGRVPDVTMYTVLIDGYCRTGKIQDAARIMDEMEAAGVQPNEVTYSVVIEACCK 322

Query: 163 ----------------------------VVS-----RRLEDAWKVFDEMVKRRLQPTLVT 189
                                       VV       + E+A +++  MVK+ + P    
Sbjct: 323 EGKSAEACNLMREMLGAGHTPDTPLAAKVVDVMCQDGKAEEAHQMWRWMVKKNVPPDNTI 382

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
             TLIY LC    V EA KL +++ + Y  KP    + SLI GLC  GEL  A  V ++M
Sbjct: 383 TNTLIYWLCKSGMVREARKLFDELEKGY--KPSLLTYNSLISGLCENGELQEAGKVWDDM 440

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
           V  + E +A  Y +LI    K G+ +E  A+  EM  +GC P+ V Y  L+    +
Sbjct: 441 VERRYEPNAMTYEALIKGFCKIGKPDEGAAVFTEMVTKGCAPSKVLYQVLVDSLSE 496


>gi|255660888|gb|ACU25613.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 481

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 165/325 (50%), Gaps = 15/325 (4%)

Query: 31  NPNDTEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVP 81
           + + T  H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +  
Sbjct: 20  HSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEW 78

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
            E ++  +I  YG+  +++ +++MF +M    V+ T+K +N L    L  G+    K  F
Sbjct: 79  DEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNXLFKVILRRGRYMMAKRYF 138

Query: 142 -QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
            +++ + + P   ++N++I G  +S ++E A + F++M  R + P +VT+ T+I G    
Sbjct: 139 NKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRV 198

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            +++EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  
Sbjct: 199 KKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAIT 257

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDE 318
           YS+L+  L  A + +E   ILKEM ++   P  NS+ +  LIS  CK  + +AA  +L  
Sbjct: 258 YSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSI-FMRLISSHCKSGNLDAAADVLKA 316

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M           Y  ++   CK G+
Sbjct: 317 MIRLSVPTEAGHYGXLIENFCKXGQ 341



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 128/263 (48%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F++M S  +   V  +NT++N      K++  ++ F  M+ + 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   +++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + +++M  Y    D  +F  LI   C  G L  A  V + M+R  +  +AG Y  LI  
Sbjct: 276 VILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             K G+ ++   +L ++ E+    +P S        YN +I   C       A T++ ++
Sbjct: 336 FCKXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQXXKAETLVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +  + N ++ G  ++G
Sbjct: 396 XKLGVQ-DXTALNTLIRGHSQEG 417



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 124/285 (43%), Gaps = 45/285 (15%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + +  +I  Y R + +E A + F EM   N++ TV  + TL+   ++  ++D   
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT-FGTLIYG 196
            L + M+ + + P+A +Y+ L+ G   + ++ +A  +  EM+ + L PT  + F  LI  
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI-- 254
            C    +D A  + + ++R+ +V  +   +  LI+  C  G+   A+ + ++++   I  
Sbjct: 301 HCKSGNLDAAADVLKAMIRL-SVPTEAGHYGXLIENFCKXGQYDKAVKLLDKLIEKDIIL 359

Query: 255 ------EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK-----------------P 291
                  ++   Y+ +I  L   G+  +   +++++ + G +                 P
Sbjct: 360 RPQSTLHLEPSAYNPMIEYLCNNGQXXKAETLVRQLXKLGVQDXTALNTLIRGHSQEGSP 419

Query: 292 NSV-----------------TYNALISGFCKEEDFEAAFTILDEM 319
           +S                   YN+L+  + K+ +   A   LD M
Sbjct: 420 DSAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSM 464



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/310 (20%), Positives = 128/310 (41%), Gaps = 47/310 (15%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D ++  + P   +++ Y+ +I    R K  +E ++   ++K    I P  + +  +I  Y
Sbjct: 175 DMKSREISP---DVVTYNTMINGYYRVKKMEEAEKYFVEMK-GRNIEPTVVTYTTLIKGY 230

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSP-D 151
                ++ AL++ +EM  F ++     ++TLL       K+   + +  ++M+KY++P D
Sbjct: 231 VSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-- 209
              +  LI     S  L+ A  V   M++  +      +G LI   C   + D+A+KL  
Sbjct: 291 NSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFCKXGQYDKAVKLLD 350

Query: 210 ----KEDIMR---VYNVKP--------------------------------DGQVFASLI 230
               K+ I+R     +++P                                D     +LI
Sbjct: 351 KLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQXXKAETLVRQLXKLGVQDXTALNTLI 410

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
           +G    G    A  + + M+R K++ +   Y+SL+ +  K     +  A L  M E    
Sbjct: 411 RGHSQEGSPDSAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHL 470

Query: 291 PNSVTYNALI 300
           P+S  + +++
Sbjct: 471 PDSALFRSVM 480


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 161/337 (47%), Gaps = 11/337 (3%)

Query: 7   RLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEM 66
            +A + + QKDP  AL++F          +      F+++LL Y  II KLG    F  M
Sbjct: 9   HVAAVLKQQKDPLKALEMF---------NKVKREDGFKHSLLTYKCIIQKLGFHGNFVAM 59

Query: 67  QQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126
           + +L + + D      E ++   +  YGR   ++ A+ +F+ M  +N + +V  +N ++N
Sbjct: 60  ENVLAETRMDIDNSLLEGVYIGAMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMN 119

Query: 127 PKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
             +  G   +  ++F  M+   + PD  ++ I I     ++R   A ++ + MV +  Q 
Sbjct: 120 ILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQL 179

Query: 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
             V + T++ G   E    EA +L  D++R+  + PD   F  L+  LC  GE+  +  +
Sbjct: 180 NAVAYCTVVAGFYEENYRVEAYELFNDMLRI-GIFPDVSTFNKLLHTLCKKGEVQESERL 238

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
             ++++  +  +   ++  I  L + G  +   ++L  +   G  P+ VTYN LI G CK
Sbjct: 239 LNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCK 298

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             +   A   L ++ + G + +  +YN ++ G CK G
Sbjct: 299 NSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMG 335



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 131/261 (50%), Gaps = 4/261 (1%)

Query: 84  IIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF- 141
           + +C V+ GFY     +E A ++F++M    +   V  FN LL+     G++   + L  
Sbjct: 182 VAYCTVVAGFYEENYRVE-AYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLN 240

Query: 142 QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
           ++++K +  +  ++NI I G      L  A  + D +++  L P +VT+ TLI GLC   
Sbjct: 241 KVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNS 300

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
            V EA K    ++    ++PDG  + +LI G C +G L  A  + +  +      D   Y
Sbjct: 301 NVVEAEKYLHKLVNG-GLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTY 359

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
            SLI+ L +    +   A+      +G KP  + YN LI G C+E     A  +++EM +
Sbjct: 360 CSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSE 419

Query: 322 KGCKANPISYNVILGGLCKDG 342
            GC ++  +YN+++ GLCK G
Sbjct: 420 NGCSSDIWTYNLVINGLCKMG 440



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 120/252 (47%), Gaps = 12/252 (4%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG------KLDRMKELFQIMEKYV 148
           R  +L  A+ M D +    +   V  +NTL+     CG       ++  K L +++   +
Sbjct: 263 RKGMLSGAMSMLDSVIREGLTPDVVTYNTLI-----CGLCKNSNVVEAEKYLHKLVNGGL 317

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
            PD  +YN LI G      L++A K+    + +   P   T+ +LI GLC    +D AL 
Sbjct: 318 EPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALA 377

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           L    +    +KP   ++  LIKGLC  G +  AL +  EM  +    D   Y+ +I+ L
Sbjct: 378 LFNAALG-KGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGL 436

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K G  ++   ++ +   +G  P+  T+N LI G+CK+   E    IL++M   G   + 
Sbjct: 437 CKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDV 496

Query: 329 ISYNVILGGLCK 340
           I+YN +L GL K
Sbjct: 497 ITYNSVLNGLSK 508



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 144/301 (47%), Gaps = 7/301 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           NL  +++ I  L R  M      +L  +  +  + P  + +  +I G    + ++E A +
Sbjct: 250 NLFTFNIFIQGLCRKGMLSGAMSMLDSVIREG-LTPDVVTYNTLICGLCKNSNVVE-AEK 307

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDACSYNILIHGC 162
              ++ +  ++     +NTL++     G L   +++ Q  I + +V PD  +Y  LI+G 
Sbjct: 308 YLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFV-PDEFTYCSLINGL 366

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             +  ++ A  +F+  + + L+PT++ +  LI GLC E  + +AL++  + M       D
Sbjct: 367 CQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNE-MSENGCSSD 425

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              +  +I GLC +G +S A  +  + +      D   +++LI    K  +      IL 
Sbjct: 426 IWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILN 485

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +M   G  P+ +TYN++++G  K    E      + M +KGC  N I+YN++   LCK G
Sbjct: 486 KMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAG 545

Query: 343 K 343
           K
Sbjct: 546 K 546



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 134/298 (44%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I  L +     E ++ LH+L +   + P    +  +I  Y +  +L+ A ++
Sbjct: 285 DVVTYNTLICGLCKNSNVVEAEKYLHKLVNGG-LEPDGFTYNTLIDGYCKMGMLQNAEKI 343

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQI-MEKYVSPDACSYNILIHGCVV 164
                          + +L+N      ++DR   LF   + K + P    YN+LI G   
Sbjct: 344 LQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQ 403

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +  A ++ +EM +      + T+  +I GLC    V +A  L  D +    V PD  
Sbjct: 404 EGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYV-PDVF 462

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +LI G C   ++   + +  +M    +  D   Y+S+++ L KA +  +     + M
Sbjct: 463 TFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETM 522

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            E+GC PN +TYN L    CK      A  ++DE+ +KG   + +S+  I+ G   +G
Sbjct: 523 VEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNG 580



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 113/224 (50%), Gaps = 9/224 (4%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKY----VSPDACSYNILIHGCVVSRRLEDAWKVFD 176
           FNTL++    C +L +M+   QI+ K     V+PD  +YN +++G   + + ED  + F+
Sbjct: 464 FNTLIDG--YCKQL-KMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFE 520

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
            MV++   P  +T+  L   LC   +V+EAL L ++I+    + PD   FA++I G    
Sbjct: 521 TMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILN-KGITPDTVSFATIISGFANN 579

Query: 237 GELSLALGVKEEMVRD-KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
           G+L  A  +   M    K+      Y+ +I+A  +    +    +  EM   GC P++ T
Sbjct: 580 GDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYT 639

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           Y  +I GFC   + ++ +  L EM +KG   +  ++  ++  LC
Sbjct: 640 YRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLC 683



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 156/378 (41%), Gaps = 41/378 (10%)

Query: 4   SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPL--KPFRYNLLHYDLIITKLGRAK 61
           S IR    P +     L   L KN N    +   H L       +   Y+ +I    +  
Sbjct: 276 SVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMG 335

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
           M    ++IL Q       VP E  +C++I    +   ++RAL +F+      ++ TV  +
Sbjct: 336 MLQNAEKIL-QGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILY 394

Query: 122 NTLLNPKLTCGK-LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           N L+      G  L  ++ + ++ E   S D  +YN++I+G      + DA  + ++ + 
Sbjct: 395 NMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIA 454

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           +   P + TF TLI G C +L+++  +++    M  + V PD   + S++ GL    +  
Sbjct: 455 KGYVPDVFTFNTLIDGYCKQLKMETTIQILNK-MWSHGVTPDVITYNSVLNGLSKAVKNE 513

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV------ 294
             +   E MV      +   Y+ L  +L KAG+ NE   ++ E+  +G  P++V      
Sbjct: 514 DLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATII 573

Query: 295 ------------------------------TYNALISGFCKEEDFEAAFTILDEMGDKGC 324
                                         TYN +I+ F ++ D      +  EMG  GC
Sbjct: 574 SGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGC 633

Query: 325 KANPISYNVILGGLCKDG 342
             +  +Y V++ G C  G
Sbjct: 634 APDTYTYRVMIDGFCITG 651



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 107/286 (37%), Gaps = 39/286 (13%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y+L+I  L +     +   +++        VP    F  +I  Y +   +E  +Q+
Sbjct: 425 DIWTYNLVINGLCKMGCVSDANNLMNDAIAKGY-VPDVFTFNTLIDGYCKQLKMETTIQI 483

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            ++M S  V   V  +N++LN      K + + E F+ M EK   P+  +YNIL      
Sbjct: 484 LNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCK 543

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC----------LELRVDEALKLKEDIM 214
           + ++ +A  + DE++ + + P  V+F T+I G            L  R+ E  K+     
Sbjct: 544 AGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSH-TT 602

Query: 215 RVYNV--------------------------KPDGQVFASLIKGLCAVGELSLALGVKEE 248
             YN+                           PD   +  +I G C  G          E
Sbjct: 603 ATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLE 662

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
           M+          +  +I+ L    R +E   I+  M   G  P  V
Sbjct: 663 MIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVPEVV 708



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 1/142 (0%)

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
           +V EA+ + E  M  YN +P    + +++  L   G    A  V   M    I  D   +
Sbjct: 91  KVQEAVDVFER-MDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTF 149

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           +  I +  +  R +    +L  M  +GC+ N+V Y  +++GF +E     A+ + ++M  
Sbjct: 150 TIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLR 209

Query: 322 KGCKANPISYNVILGGLCKDGK 343
            G   +  ++N +L  LCK G+
Sbjct: 210 IGIFPDVSTFNKLLHTLCKKGE 231


>gi|358346655|ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503316|gb|AES84519.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1023

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 138/293 (47%), Gaps = 2/293 (0%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           +D+++  L R    DE + ++  + +   I P  + + ++I  Y +      AL +  EM
Sbjct: 569 FDILLNNLKRVGRMDEARSLIIDM-YSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEM 627

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169
              N++  V  +N L+   L  GK D      +++E  ++PD  +YN +I+   +  + E
Sbjct: 628 KEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSRMIELGLAPDCITYNTIINTYCIKGKTE 687

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           DA  + +EM    + P  VT+  LI GLC    V++A +   D M V    P       L
Sbjct: 688 DALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKA-ESALDEMLVMEFVPTPITHKFL 746

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           +K      +    L + E++V   +E+   +Y++LI+   + G   +   +L EM +RG 
Sbjct: 747 VKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGI 806

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             + VTYNALI G+C     E A     +M   G   N  +YN +LGGL   G
Sbjct: 807 SADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAG 859



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 146/278 (52%), Gaps = 6/278 (2%)

Query: 69  ILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127
           +L +  ++  + P  + +  +I   +   R++E A  +  +M    +   +    T+++ 
Sbjct: 377 VLFREMYEMGLDPNHVSYATIINSLFKSGRVME-AFNLQSQMVVRGISFDIVTCTTVMDG 435

Query: 128 KLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
               GK    +E+F+ I++  ++P+  +Y+ L+ G     ++E A  V  +M K  + P 
Sbjct: 436 LFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPN 495

Query: 187 LVTFGTLIYGLCLELRVDEALK-LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
           ++TF ++I G   +  + +A+  L+E + R  NV P+  V+A LI G    GE  +A   
Sbjct: 496 VITFSSIINGYAKKGMLSKAVDVLREMVQR--NVMPNTIVYAILIDGYFKAGEQDVADDF 553

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
            +EM   ++E    I+  L++ L + GR +E  +++ +M  +G  P+ V Y +LI G+ K
Sbjct: 554 CKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFK 613

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           E +  AA +I+ EM +K  + + ++YN ++ GL + GK
Sbjct: 614 EGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGK 651



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 135/300 (45%), Gaps = 54/300 (18%)

Query: 80  VPKEIIFCN-VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           V K++I  N +I  Y  A L+ +A ++ +     +V++ +  +NTLL      G L R +
Sbjct: 228 VTKDVIGLNTLIDGYCEAGLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAE 287

Query: 139 ELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            LF +I+  +   D               RL++   V    +K  LQPTLVT+ TLI   
Sbjct: 288 SLFNEILGFWKDED---------------RLKNNDVVTQNEIKN-LQPTLVTYTTLIAAY 331

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C  + V+E+  L +  M +  + PD    +S++ G C  G+L+ A  +  EM    ++ +
Sbjct: 332 CKFVGVEESHSLYKK-MIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPN 390

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCK--------------------------- 290
              Y+++I++LFK+GR  E   +  +M  RG                             
Sbjct: 391 HVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFE 450

Query: 291 --------PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
                   PN VTY+AL+ G+CK    E A  +L +M  +    N I+++ I+ G  K G
Sbjct: 451 TILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKG 510



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 132/301 (43%), Gaps = 19/301 (6%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFD 107
           + Y+ II         ++   IL+++K    I+P  + +  +IG   +   +E+A    D
Sbjct: 671 ITYNTIINTYCIKGKTEDALDILNEMK-SYGIMPNAVTYNILIGGLCKTGAVEKAESALD 729

Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE---LFQIMEKYVSP----DACSYNILIH 160
           EM      + ++F  T +  K       R ++   + QI EK V+         YN LI 
Sbjct: 730 EM------LVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLIT 783

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                     A  V DEMVKR +   LVT+  LI G C    V++ALK     M V  + 
Sbjct: 784 VFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQ-MFVDGIA 842

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM----DAGIYSSLISALFKAGRKNE 276
           P+   + +L+ GL   G +   +   E++V +  E     +A  Y  L+S   + G + +
Sbjct: 843 PNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRVGNRKK 902

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +  EM  +G  P   TYN LIS + K      A  +L+++  KG   N  +Y+++  
Sbjct: 903 TIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPNSFTYDILTC 962

Query: 337 G 337
           G
Sbjct: 963 G 963



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 144/310 (46%), Gaps = 22/310 (7%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           N+ +++ + P   N + Y+++I  L +    ++ +  L ++      VP  I    ++  
Sbjct: 694 NEMKSYGIMP---NAVTYNILIGGLCKTGAVEKAESALDEMLV-MEFVPTPITHKFLVKA 749

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPD 151
           Y R+   ++ LQ+ +++ +  +++++  +NTL+      G   + K +  +++++ +S D
Sbjct: 750 YSRSEKADKILQIHEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISAD 809

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC----LELRVDEAL 207
             +YN LI G      +E A K + +M    + P + T+ TL+ GL     +E  ++E  
Sbjct: 810 LVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETE 869

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           KL  + M    + P+   +  L+ G   VG     + +  EM+          Y+ LIS 
Sbjct: 870 KLVSE-MNERGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISD 928

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK-------EEDFEAAFTI----- 315
             K+G+  E   +L ++  +G  PNS TY+ L  G+         +   + ++ I     
Sbjct: 929 YAKSGKMIEARELLNDLLTKGRIPNSFTYDILTCGWLNLSYEPEIDRSLKRSYEIEVKKL 988

Query: 316 LDEMGDKGCK 325
           L EMG KG K
Sbjct: 989 LIEMGRKGLK 998



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 105/240 (43%), Gaps = 14/240 (5%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IM 144
           FC +I  Y        A   F  M +  +  T+ F+NTLL      G + ++K ++  ++
Sbjct: 62  FCTLIRLYLTHDRFSTASATFSHMRALGLVPTLPFWNTLLYQFNASGLVSQVKLMYSDML 121

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
              V PD  S N+L+H       L+ A           +    VT+ T+I+G C +  VD
Sbjct: 122 FCGVVPDVFSVNVLVHSLCKVGDLDLALGYLRN--NDVVDIDNVTYNTVIWGFCQKGLVD 179

Query: 205 EALKLKEDIMRVYNVKPDGQVFAS-----LIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +   L  ++++       G  F S     L+KG C +G +  A  V   +V   +  D  
Sbjct: 180 QGFGLLSEMVK------RGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVI 233

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             ++LI    +AG  ++   +++       K + VTYN L+  FCK  D   A ++ +E+
Sbjct: 234 GLNTLIDGYCEAGLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEI 293



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 18/222 (8%)

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           ++ +++  V+ D    N LI G   +  +  A ++ +   +  ++  +VT+ TL+   C 
Sbjct: 220 MYNLVDGGVTKDVIGLNTLIDGYCEAGLMSQATELIENSWRSDVKIDIVTYNTLLKAFCK 279

Query: 200 ELRVDEALKLKEDIMRVY------------------NVKPDGQVFASLIKGLCAVGELSL 241
              +  A  L  +I+  +                  N++P    + +LI   C    +  
Sbjct: 280 TGDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEE 339

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           +  + ++M+ + I  D    SS++    + G+  E   + +EM E G  PN V+Y  +I+
Sbjct: 340 SHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIIN 399

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              K      AF +  +M  +G   + ++   ++ GL K GK
Sbjct: 400 SLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGK 441



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 96/231 (41%), Gaps = 8/231 (3%)

Query: 115 QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWK 173
            + V FF TL+   LT  +       F  M    + P    +N L++    S  +     
Sbjct: 56  HLYVSFFCTLIRLYLTHDRFSTASATFSHMRALGLVPTLPFWNTLLYQFNASGLVSQVKL 115

Query: 174 VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL--KEDIMRVYNVKPDGQVFASLIK 231
           ++ +M+   + P + +   L++ LC    +D AL      D++ + NV      + ++I 
Sbjct: 116 MYSDMLFCGVVPDVFSVNVLVHSLCKVGDLDLALGYLRNNDVVDIDNV-----TYNTVIW 170

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           G C  G +    G+  EMV+  +  D+   + L+    + G       ++  + + G   
Sbjct: 171 GFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTK 230

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + +  N LI G+C+      A  +++       K + ++YN +L   CK G
Sbjct: 231 DVIGLNTLIDGYCEAGLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTG 281


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 156/304 (51%), Gaps = 5/304 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  R N     +++  L +    ++ ++IL +   +  +V  E+I+   +  Y R   + 
Sbjct: 345 KGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENG-LVADEVIYNTFVNGYCRIGDMN 403

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
           +A+   + M SF ++     FN+L++      ++D+ +E  + M EK V+P   +YN LI
Sbjct: 404 KAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLI 463

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA-LKLKEDIMRVYN 218
            G       +  +++ ++M +  ++P +V++G+LI  LC + ++ EA + L++ I R   
Sbjct: 464 DGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICR--G 521

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V P+ QV+  LI G C VG++  AL   +EM+R +I      Y+ LI  L K G+  E  
Sbjct: 522 VLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAE 581

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             L ++   G  P+ +TYN+LISG+    +      + + M + G K    +Y+ ++ G 
Sbjct: 582 DFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGC 641

Query: 339 CKDG 342
            K+G
Sbjct: 642 SKEG 645



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 153/314 (48%), Gaps = 23/314 (7%)

Query: 41  KPFRYNLLHYDLIITKLGRAK-------MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           +  R N+  Y+++I  L R K       MFDEM  I         +V   + +  +I  Y
Sbjct: 205 RGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNI--------NLVGSIVTYNTLIDGY 256

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDA 152
            +   L+ A +M + M   +V   +  FN+LL+      K+   + L + ME     PD 
Sbjct: 257 CKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDG 316

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +Y+IL  G +       A +++++  ++ ++    T   L+ GLC + +V++A    E+
Sbjct: 317 YTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKA----EE 372

Query: 213 IMRVYN---VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
           I++ +    +  D  ++ + + G C +G+++ A+   E M    +  ++  ++SLI    
Sbjct: 373 ILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFC 432

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
                ++    +K+M E+G  P+  TYN LI G+ K   F+  F IL++M + G K N +
Sbjct: 433 DMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVV 492

Query: 330 SYNVILGGLCKDGK 343
           SY  ++  LCKDGK
Sbjct: 493 SYGSLINCLCKDGK 506



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 148/329 (44%), Gaps = 37/329 (11%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKH-------------------DTRIVPKEIIFCNVI 90
           Y+ +I   G+   FD   QIL Q++                    D +I+  EI+  ++I
Sbjct: 459 YNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMI 518

Query: 91  --GFYGRARL-------------LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
             G    A++             ++ AL+ FDEM    +  T+  +N L++     GKL 
Sbjct: 519 CRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLT 578

Query: 136 RMKE-LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
             ++ L QI     SPD  +YN LI G   +  +     +++ M    ++PT+ T+  LI
Sbjct: 579 EAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLI 638

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
            G C +  ++   KL  +++++ N+ PD  V+ ++I     +G    A  + + M+   I
Sbjct: 639 SG-CSKEGIELVEKLYNEMLQM-NLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGI 696

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
             D   Y+SLI   F+ G+ +    ++  MK +   P + TY+ L+ G C  +DF  A+ 
Sbjct: 697 HPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYV 756

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
              EM +     N    N +  GL ++G+
Sbjct: 757 WYREMVENNFLPNASICNELTAGLEQEGR 785



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 100/193 (51%), Gaps = 1/193 (0%)

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           D   Y   I   V  + L+   +  D M KR ++P +  +  LI GLC E R+ +A K+ 
Sbjct: 175 DTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMF 234

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
           +++  + N+      + +LI G C VGEL  A  ++E M    +  +   ++SL+S L K
Sbjct: 235 DEMCNI-NLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCK 293

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
             +  E  ++LKEM+  G  P+  TY+ L  G  + +D   A  + ++  +KG + N  +
Sbjct: 294 MRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYT 353

Query: 331 YNVILGGLCKDGK 343
            +++L GLCK GK
Sbjct: 354 GSILLNGLCKQGK 366



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 137/299 (45%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ ++ +++ L + +   E + +L +++ +   +P    +  +     R      A+++
Sbjct: 280 NIITFNSLLSGLCKMRKMKEARSLLKEMEVNG-FMPDGYTYSILFDGLLRCDDGNGAMEL 338

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           +++ +   +++     + LLN     GK+++ +E+ +   E  +  D   YN  ++G   
Sbjct: 339 YEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCR 398

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +  A    + M    L+P  +TF +LI   C    +D+A +  +  M    V P  +
Sbjct: 399 IGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKK-MAEKGVTPSVE 457

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G   +        + E+M    ++ +   Y SLI+ L K G+  E   +L++M
Sbjct: 458 TYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDM 517

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             RG  PN+  YN LI G C     + A    DEM         ++YNV++ GLCK GK
Sbjct: 518 ICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGK 576



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 116/245 (47%), Gaps = 8/245 (3%)

Query: 47  LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMF 106
           L+ Y+++I  L +     E +  L Q+       P  I + ++I  Y  A  + + L ++
Sbjct: 561 LVTYNVLIDGLCKKGKLTEAEDFLTQITSSGH-SPDVITYNSLISGYANAGNVSKCLGLY 619

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGK--LDRMKELF-QIMEKYVSPDACSYNILIHGCV 163
           + M +  ++ TV+ ++ L++    C K  ++ +++L+ ++++  + PD   YN +IH   
Sbjct: 620 ETMKNLGIKPTVRTYHPLISG---CSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYA 676

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
                + A+ +   M+ + + P  +T+ +LI G   E ++     L  + M+   + P  
Sbjct: 677 EIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNN-MKAKELAPKA 735

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             +  L+KG C + + S A     EMV +    +A I + L + L + GR  E   I  E
Sbjct: 736 DTYDILVKGHCDLKDFSGAYVWYREMVENNFLPNASICNELTAGLEQEGRLQEVQVICSE 795

Query: 284 MKERG 288
           M  +G
Sbjct: 796 MNVKG 800


>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
          Length = 1443

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 8/264 (3%)

Query: 85  IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR---MKELF 141
           +F  ++G Y R+   + A Q+ D M   +++  +  FNTL+N +   G L     ++ L 
Sbjct: 223 VFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLH 282

Query: 142 QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI--YGLCL 199
           ++ +  + PDA +YN LI  C     L+DA  VF+EM+    +P L T+  ++  +G C 
Sbjct: 283 EVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCG 342

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           + +  E L  KE + + +  +PD   + SL+      G++     V EE+V+     D  
Sbjct: 343 KAQEAE-LMFKELVEKGF--QPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGI 399

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+++I    K GR +    +  EM+  GC P++VTY  L+    K +    A  +L+EM
Sbjct: 400 TYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEM 459

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
            D G K   ++++ ++    K G+
Sbjct: 460 ADAGLKPTLVTFSALICAYAKSGR 483



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 131/274 (47%), Gaps = 3/274 (1%)

Query: 68  QILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127
           ++LH+++    + P  I +  +I    +   L+ A+ +F+EM +   +  +  +N +++ 
Sbjct: 279 ELLHEVRQ-AGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSV 337

Query: 128 KLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
              CGK    + +F +++EK   PDA +YN L++       +E   +V +E+VK   +  
Sbjct: 338 HGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKD 397

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
            +T+ T+I+      R+D AL L  D MR     PD   +  L+  L  +  +S A  V 
Sbjct: 398 GITYNTMIHMYGKMGRLDLALGLY-DEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVL 456

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           EEM    ++     +S+LI A  K+GR+++       M E G KP+ + Y  ++  F + 
Sbjct: 457 EEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARS 516

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           ++      +   M   G K +   Y V+L  L K
Sbjct: 517 DETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAK 550



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 114/243 (46%), Gaps = 3/243 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R +L  Y+ +++  GR     E + +  +L  +    P  + + +++  + +   +ER  
Sbjct: 325 RPDLWTYNAMVSVHGRCGKAQEAELMFKELV-EKGFQPDAVTYNSLLYAFAKEGDVERVE 383

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
           ++ +E+     +     +NT+++     G+LD    L+  M     +PDA +Y +L+   
Sbjct: 384 RVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSL 443

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
               R+ +A KV +EM    L+PTLVTF  LI       R D+A +   D M    VKPD
Sbjct: 444 GKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAER-TFDRMVESGVKPD 502

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              +  ++       E    + +   M++D  + D G+Y  L++AL K    +E   +++
Sbjct: 503 RLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQ 562

Query: 283 EMK 285
           +M+
Sbjct: 563 DME 565



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 125/285 (43%), Gaps = 6/285 (2%)

Query: 53   IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
            +I   G+ K++ + +  +  LK ++ +  +  I+  +I  Y  + L E A  +FD M   
Sbjct: 754  MIEAYGKLKLWQQAENFVKGLKQESGVDRR--IWNALIHAYAESGLYEHARAIFDIMIKK 811

Query: 113  NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDA 171
                TV+  N ++   +  G+LD +  + Q ++   +     +  +++     +  + + 
Sbjct: 812  GPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEV 871

Query: 172  WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV-DEALKLKEDIMRVYNVKPDGQVFASLI 230
             K+++ M      P +  +  +I  LC   R  D  L + E  M     KPD  V  +L+
Sbjct: 872  MKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAE--MEGAGFKPDLVVLNTLL 929

Query: 231  KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
                  G     + V   ++   +E D   Y++LI    +  R  E   +L EM +RG  
Sbjct: 930  LMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLT 989

Query: 291  PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
            P   +Y  L++   K + +E A  + +EM  KG + N   Y++++
Sbjct: 990  PKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMM 1034



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 112/260 (43%), Gaps = 25/260 (9%)

Query: 43  FRYNLLHYDLII---TKLGRAKM----FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           FR + + Y+ +I    K+GR  +    +DEM+ I           P  + +  ++   G+
Sbjct: 394 FRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAI--------GCTPDAVTYTVLVDSLGK 445

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACS 154
              +  A ++ +EM+   ++ T+  F+ L+      G+ D  +  F +++E  V PD  +
Sbjct: 446 MDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLA 505

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           Y +++     S        ++  M+K   +P    +  L+  L      DE   + +D+ 
Sbjct: 506 YLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDME 565

Query: 215 RVYNVKPDGQVFAS-LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
            V+ + P   V +S LIK  C    +S    + +       E D     S++ A  K G+
Sbjct: 566 AVFEMNP--LVISSILIKAEC----ISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGK 619

Query: 274 KNEFPAILKEMKERGCKPNS 293
             +  ++L+ +++    PNS
Sbjct: 620 HEKGLSLLEWIRQH--VPNS 637


>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
          Length = 698

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 136/265 (51%), Gaps = 3/265 (1%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I+P  + +  +I + GR   L +   +  EM +  +   V+ +NT++N    C    +  
Sbjct: 147 IIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKCRSASQAS 206

Query: 139 ELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           ++  Q+++   +PD  ++N +I G      + +A K+  E ++R L+P  +++  LI+G 
Sbjct: 207 DMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGF 266

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C+      A  L  ++M   +  PD     +LI GL   G+++ AL V+E+M   ++  D
Sbjct: 267 CVRGEAMVASDLLVEMMGRGHT-PDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPD 325

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           A IY+ LIS L K    +    +L+EM E+  +P+   Y  LI GF + +    A  I +
Sbjct: 326 ANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFE 385

Query: 318 EMGDKGCKANPISYNVILGGLCKDG 342
            M +K C  + ++YNV++ G CK G
Sbjct: 386 FMEEKAC-PDIVAYNVMIKGYCKFG 409



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 131/265 (49%), Gaps = 2/265 (0%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           VP  + +  +I  Y R   + R L +  EM +  +  TV  +  +++     G L +++ 
Sbjct: 113 VPGAVFYNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGDLTKVES 172

Query: 140 LF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L  ++  + +SP+   YN +I+     R    A  + ++MVK R  P +VTF T+I G C
Sbjct: 173 LLGEMRARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFC 232

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
            E  V EALKL  + +R   ++P+   +  LI G C  GE  +A  +  EM+      D 
Sbjct: 233 REGDVREALKLLREAIR-RGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDM 291

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
               +LI  L  +G+ N+   + ++M ER   P++  YN LISG CK+    AA  +L+E
Sbjct: 292 ITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLEE 351

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M ++  + +   Y  ++ G  +  K
Sbjct: 352 MLEQKVQPDKFIYTTLIDGFVRSDK 376



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 149/346 (43%), Gaps = 40/346 (11%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
            +  A  L P   N+  Y+ +I  L + +   +   +L+Q+   +R  P  + F  +I  
Sbjct: 175 GEMRARGLSP---NVQIYNTVINALCKCRSASQASDMLNQMVK-SRFNPDVVTFNTMIAG 230

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPD 151
           + R   +  AL++  E     ++     +  L++     G+     +L  ++M +  +PD
Sbjct: 231 FCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPD 290

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +   LIHG VVS ++ DA  V ++M +R++ P    +  LI GLC +  +  A  L E
Sbjct: 291 MITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLE 350

Query: 212 DIMRVYNVKPDGQVFASLI----------------------------------KGLCAVG 237
           +++    V+PD  ++ +LI                                  KG C  G
Sbjct: 351 EMLE-QKVQPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKACPDIVAYNVMIKGYCKFG 409

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
            +  A+     M +     D   Y++L+    K G  +    +L +M +R CKPN  TY 
Sbjct: 410 MMKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDISASLRLLCDMMKRRCKPNIFTYA 469

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +LI G+C   D  +A  +  +M  +G   N + Y V++G L K  K
Sbjct: 470 SLICGYCNIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIGSLFKKDK 515



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 134/325 (41%), Gaps = 51/325 (15%)

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           I+ +   + +++P   I+  +I    + R+L  A  + +EM    VQ     + TL++  
Sbjct: 312 IVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGF 371

Query: 129 LTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
           +   KL   +++F+ ME+   PD  +YN++I G      +++A      M K    P   
Sbjct: 372 VRSDKLSDARKIFEFMEEKACPDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEF 431

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           T+ TL+ G   +  +  +L+L  D+M+    KP+   +ASLI G C +G+   A  +  +
Sbjct: 432 TYTTLVDGYAKKGDISASLRLLCDMMK-RRCKPNIFTYASLICGYCNIGDTYSAEDLFAK 490

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT------------- 295
           M  + +  +   Y+ LI +LFK  +  +  A  + M    C PN  T             
Sbjct: 491 MQSEGLFPNVVHYTVLIGSLFKKDKVIQAAAYFEHMLLNHCPPNDATVHYLVNGLVNCRH 550

Query: 296 -------------------------------------YNALISGFCKEEDFEAAFTILDE 318
                                                YNA+I   C+      A  + D+
Sbjct: 551 GMVNSNRSDTKQAHEKSALLDVFRGLISDGLDPRISAYNAIIFSLCRHNMLGKAMDLKDK 610

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M +KGC  +PI++  +L G    G+
Sbjct: 611 MSNKGCLPDPITFLSLLYGFSSAGE 635



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 1/193 (0%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PDA   N L+   V  RR E A  ++ EM+ R       +   ++ GLCLE RV+E   L
Sbjct: 44  PDAPDCNCLLRLLVERRRWERARGLYGEMLVREGGADDYSTCVMVRGLCLEGRVEEGRGL 103

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            E       V P    +  LI G C  G++   L +  EM    I      Y ++I  L 
Sbjct: 104 IEARWGEGCV-PGAVFYNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLG 162

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           + G   +  ++L EM+ RG  PN   YN +I+  CK      A  +L++M       + +
Sbjct: 163 RKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNPDVV 222

Query: 330 SYNVILGGLCKDG 342
           ++N ++ G C++G
Sbjct: 223 TFNTMIAGFCREG 235


>gi|255660862|gb|ACU25600.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 484

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 165/325 (50%), Gaps = 15/325 (4%)

Query: 31  NPNDTEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVP 81
           + + T  H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +  
Sbjct: 20  HSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEW 78

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
            E ++  +I  YG+  +++ +++MF +M    V+ T+K +N L    L  G+    K  F
Sbjct: 79  DEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYF 138

Query: 142 -QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
            +++ + + P   ++N++I G  +S ++E A + F++M  R + P +VT+ T+I G    
Sbjct: 139 NKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRV 198

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            +++EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  
Sbjct: 199 KKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAIT 257

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDE 318
           YS+L+  L  A + +E   ILKEM ++   P  NS+    LIS  CK  + +AA  +L  
Sbjct: 258 YSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIIMR-LISSHCKSGNLDAAADVLKA 316

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M           Y +++   CK G+
Sbjct: 317 MIRLSVPTEAGHYGLLIENFCKAGQ 341



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 130/263 (49%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F++M S  +   V  +NT++N      K++  ++ F  M+ + 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   +++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + +++M  Y    D  +   LI   C  G L  A  V + M+R  +  +AG Y  LI  
Sbjct: 276 VILKEMMDKYLAPTDNSIIMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGLLIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             KAG+ ++   +L ++ E+    +P S        YN++I   C       A T++ ++
Sbjct: 336 FCKAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAYNSMIEYLCNNGQASKAETLVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +P + N ++ G  ++G
Sbjct: 396 MKLGVQ-DPTALNTLIRGHSQEG 417



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 125/287 (43%), Gaps = 49/287 (17%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + +  +I  Y R + +E A + F EM   N++ TV  + TL+   ++  ++D   
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT-------LVT- 189
            L + M+ + + P+A +Y+ L+ G   + ++ +A  +  EM+ + L PT       L++ 
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIIMRLISS 300

Query: 190 ----------------------------FGTLIYGLCLELRVDEALKL------KEDIMR 215
                                       +G LI   C   + D+A+KL      K+ I+R
Sbjct: 301 HCKSGNLDAAADVLKAMIRLSVPTEAGHYGLLIENFCKAGQYDKAVKLLDKLIEKDIILR 360

Query: 216 ---VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
                +++P    + S+I+ LC  G+ S A  +  ++++  ++ D    ++LI    + G
Sbjct: 361 PQSTLHLEPSA--YNSMIEYLCNNGQASKAETLVRQLMKLGVQ-DPTALNTLIRGHSQEG 417

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             +    +LK M  R        YN L+  + K+ +   A   LD M
Sbjct: 418 SPDSAFELLKIMLRRKVDSEKSAYNLLVQSYLKKNEPXDAKAALDSM 464


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 174/353 (49%), Gaps = 17/353 (4%)

Query: 3   TSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNL---LHYDLIITKLGR 59
           T +I + C  +L ++P L+  +F N      D     L      L   + Y  +I  L +
Sbjct: 97  TLNILINCFSQLGQNP-LSFSVFANILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCK 155

Query: 60  AKMFDEMQQILHQLKHDTRIV-PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV 118
                   Q+L ++  D ++V P  +++  +I    + +L+  A  ++ EM S  +   V
Sbjct: 156 VGQARAALQLLRRV--DGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDV 213

Query: 119 KFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
             ++ L++     GKL    +LF +++ + + PD  ++NIL+ G     ++++   VF  
Sbjct: 214 VTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAM 273

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M+K+ ++P +VT+ +L+ G CL  +V++A  +  + M    V PD Q +  +I G C + 
Sbjct: 274 MMKQGIKPNVVTYCSLMDGYCLVKQVNKANSI-FNTMAQGGVNPDTQSYNIMINGFCKIK 332

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           ++  A+ + ++M    I  +   Y+SLI  L K+G+ +    ++ EM +RG  P+ +TY+
Sbjct: 333 KVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYS 392

Query: 298 ALISGFCKEEDFEAAFTILDEMGD--------KGCKANPISYNVILGGLCKDG 342
           +++   CK    + A  +L ++ D        KG   +  +Y V++ G C  G
Sbjct: 393 SILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKG 445



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 153/304 (50%), Gaps = 11/304 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ II  + + K+ +E   +  ++  +  I P  + +  +I  +     L+ A+ +
Sbjct: 177 NVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEG-ISPDVVTYSALISGFFIVGKLKDAIDL 235

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           F++M   N++  V  FN L++     GK+   K +F +M K  + P+  +Y  L+ G  +
Sbjct: 236 FNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCL 295

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            +++  A  +F+ M +  + P   ++  +I G C   +VDEA+ L +  M   N+ P+  
Sbjct: 296 VKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKK-MHCKNIIPNVV 354

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + SLI GLC  G++S AL + +EM    +  D   YSS++ AL K  + ++  A+L ++
Sbjct: 355 TYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKL 414

Query: 285 KE--------RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
           K+        +G   +   Y  +I GFC +  F  A  +L +M D G   +  +Y +I+ 
Sbjct: 415 KDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIPDAKTYEIIIL 474

Query: 337 GLCK 340
            L K
Sbjct: 475 SLFK 478



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 112/224 (50%), Gaps = 2/224 (0%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           + TL+N     G+     +L + ++ K V P+   YN +I      + + +A+ ++ EMV
Sbjct: 146 YGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMV 205

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
              + P +VT+  LI G  +  ++ +A+ L    M + N+KPD   F  L+ G C  G++
Sbjct: 206 SEGISPDVVTYSALISGFFIVGKLKDAIDLFNK-MILENIKPDVYTFNILVDGFCKDGKM 264

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
                V   M++  I+ +   Y SL+       + N+  +I   M + G  P++ +YN +
Sbjct: 265 KEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIM 324

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           I+GFCK +  + A  +  +M  K    N ++Y  ++ GLCK GK
Sbjct: 325 INGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGK 368



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 107/218 (49%), Gaps = 8/218 (3%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + +C+++  Y   + + +A  +F+ M+   V    + +N ++N      K+D   
Sbjct: 279 IKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAM 338

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            LF+ M  K + P+  +Y  LI G   S ++  A K+ DEM  R + P ++T+ +++  L
Sbjct: 339 NLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDAL 398

Query: 198 CLELRVDEAL----KLKEDIMRVYNVKP---DGQVFASLIKGLCAVGELSLALGVKEEMV 250
           C   +VD+A+    KLK+ +     VK    D   +  +I+G C  G  + AL +  +M 
Sbjct: 399 CKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSKME 458

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
            +    DA  Y  +I +LFK    +    +L+EM  RG
Sbjct: 459 DNGRIPDAKTYEIIILSLFKKDENDMAEKLLREMIARG 496


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 152/344 (44%), Gaps = 62/344 (18%)

Query: 28  PNPNP------------NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 75
           P+PNP            N T  H L  F     H  +  T       F+ +   L ++KH
Sbjct: 30  PSPNPQIAFFLRHCKTGNVTATHALHFF-----HLMMRSTPTPSLSSFNHLLSGLAKIKH 84

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
                     +  V   Y + RL          +SS    + +   N L N       ++
Sbjct: 85  ----------YSQVFSLYNQMRL--------SGLSSDRCTLNI-LLNCLCN-------VN 118

Query: 136 RMKELFQ----IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           R++E F     I+ +  SP+  +YN LI G  +  R+ +A ++F  M K    P +VT+G
Sbjct: 119 RLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYG 178

Query: 192 TLIYGLCLELRVDEALKLKE----DIMRV-YNVKPDGQVFASLIKGLCAVG--------- 237
           TLI GLC    ++ ALKL +    DI R   N KP+   +  ++ GLC VG         
Sbjct: 179 TLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLF 238

Query: 238 -ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
            E+     +  EM+   ++ D   ++ LI  L K G+  E   +L  M E G  P+ VTY
Sbjct: 239 EEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTY 298

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           N+LI GFC   D  +A  +   M  KGC+ + ISYNV++ G  K
Sbjct: 299 NSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSK 342



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 153/308 (49%), Gaps = 11/308 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKH---------DTRIVPKEIIFCNVIGFYGRA 96
           N++ Y++I+  L +    DE +Q+  ++K          D  + P  + F  +I    + 
Sbjct: 214 NVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKE 273

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSY 155
             +  A ++   M    +   +  +N+L+      G L+  +ELF  M  K   PD  SY
Sbjct: 274 GKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISY 333

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N+LI+G   + ++E+A K+++EM+    +P ++T+ +L+ G+ L  +VD+A KL   +M+
Sbjct: 334 NVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLF-SVMK 392

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
            + +  +   +   + GLC    L  A+ +  E+     +++    + LI  L KAG+  
Sbjct: 393 AHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLE 452

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
               + +++   G +PN VTY  +I GFC+E   + A  ++ +M   GC  + I+YN ++
Sbjct: 453 TAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLM 512

Query: 336 GGLCKDGK 343
            G  +  K
Sbjct: 513 RGFYESNK 520



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 77/179 (43%), Gaps = 7/179 (3%)

Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
           A   F  M++    P+L +F  L+ GL       +   L    MR+  +  D      L+
Sbjct: 53  ALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQ-MRLSGLSSDRCTLNILL 111

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
             LC V  L         ++R     +   Y++LI  L    R +E   +   M++ GC 
Sbjct: 112 NCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCT 171

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDK------GCKANPISYNVILGGLCKDGK 343
           P+ VTY  LI G C   +   A  +  EM +        CK N I+YN+I+ GLCK G+
Sbjct: 172 PDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGR 230



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 81/175 (46%), Gaps = 5/175 (2%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           +AH +    Y    Y + +  L +     E  ++  +LK     +  E + C + G   +
Sbjct: 392 KAHGIAENSYT---YGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLC-K 447

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACS 154
           A  LE A ++F+++S+   +  V  +  +++     G++D+   L Q ME    +PD  +
Sbjct: 448 AGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIIT 507

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           YN L+ G   S +LE+  ++   M ++ + P  +T   ++  L  + +  E L L
Sbjct: 508 YNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHL 562


>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
          Length = 637

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 148/317 (46%), Gaps = 18/317 (5%)

Query: 28  PNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFC 87
           P P+P   ++           H++  + +L  A   D +Q  L +++    +   E    
Sbjct: 41  PRPDPGSGDS---------ARHHEATVRRLAAAGDVDGVQYALQEMRLRG-VACTEDALV 90

Query: 88  NVIGFYGRARLLERALQMFDEMSSFNVQ-MTVKFFNTLLNPKLTCGKLDRMKELFQIMEK 146
             IG + RA   +RAL+ F   S    +   V+ +N LL+  L    +  +  ++  M K
Sbjct: 91  AAIGAFARAGSADRALKTFYRASDLGCRDPGVRVYNHLLDALLRENMVGAVVPVYDNMRK 150

Query: 147 Y-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
             V P+  +YN+LI     + R++ A K+ DEM ++   P  V+ GT++ G+C   RV+E
Sbjct: 151 AGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEE 210

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           A     + +      P    + +++  LC    +     V  EMV+  ++ +   Y++++
Sbjct: 211 ARGFLAETV------PVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIV 264

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
            A  KA       AIL  M   GC PN +T+ AL+ GF ++     A ++   M D+G  
Sbjct: 265 DAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWA 324

Query: 326 ANPISYNVILGGLCKDG 342
            + ISYNV++ GLC  G
Sbjct: 325 PSTISYNVLIRGLCCIG 341



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 142/302 (47%), Gaps = 14/302 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y+L+I  L +    D  +++L ++       P E+    ++    +   +E A   
Sbjct: 156 NVYTYNLLIRALCQNDRVDAARKMLDEMSRKG-CHPDEVSHGTIVSGMCKLGRVEEARGF 214

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHG 161
             E  +  VQ +   +N +++    CG+  RM E+F ++ + V     P+  +Y  ++  
Sbjct: 215 LAE--TVPVQAS---YNAVVHA--LCGEF-RMWEVFSVVNEMVQRGLQPNVVTYTTIVDA 266

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              +R L  A  +   MV     P ++TF  L+ G   + +V +AL +    M      P
Sbjct: 267 FCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWH-WMVDEGWAP 325

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
               +  LI+GLC +G+L  AL     M R+ +  +A  YS+L+     AG  +    I 
Sbjct: 326 STISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIW 385

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EMK  GCKPN V Y  +I   CK+  F+ A +++D+M    C  N +++N ++G LC  
Sbjct: 386 NEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDC 445

Query: 342 GK 343
           G+
Sbjct: 446 GR 447



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 143/335 (42%), Gaps = 40/335 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           N++ Y  I+    +A+       IL ++       P  + F  ++ GF+   ++ + AL 
Sbjct: 256 NVVTYTTIVDAFCKARELRMACAILARMV-SMGCTPNVLTFTALVKGFFEDGKVHD-ALS 313

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHGCV 163
           M+  M       +   +N L+      G L    + F  M++  + P+A +Y+ L+ G  
Sbjct: 314 MWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFS 373

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            +  L+ A  +++EM     +P +V +  +I  LC ++  D+A  L  D M + N  P+ 
Sbjct: 374 NAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLI-DKMLMDNCPPNT 432

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG-RKNEFPAI-- 280
             F +LI  LC  G +  AL V   M R+    +   Y+ L+  LF+ G  K+ F  +  
Sbjct: 433 VTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIE 492

Query: 281 --------------------------------LKEMKERGCKPNSVTYNALISGFCKEED 308
                                           L  M  +G +P++ T+NA+I  +CKE  
Sbjct: 493 MLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGK 552

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              A  +L +M    C  N ++Y +++  LC  GK
Sbjct: 553 VSIAACLLGQMNAVNCPRNVVAYTILISELCNQGK 587



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 128/320 (40%), Gaps = 48/320 (15%)

Query: 17  DPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD 76
           D K AL  F       N  + + L P   N   Y  ++     A   D    I +++K  
Sbjct: 342 DLKGALDFF-------NSMKRNALLP---NATTYSTLVDGFSNAGDLDGAMLIWNEMK-S 390

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           +   P  +++ N+I    +  + ++A  + D+M   N       FNTL+     CG++ R
Sbjct: 391 SGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGR 450

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              +F  M +    P+  +YN L+HG       +DA+ +  EM+    + +LVT+ T+I 
Sbjct: 451 ALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVIN 510

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
            LC                                  +C      L LG    M+   I+
Sbjct: 511 CLC---------------------------------QMCMRKHAMLLLG---RMMVQGIQ 534

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            DA  ++++I A  K G+ +    +L +M    C  N V Y  LIS  C +     A   
Sbjct: 535 PDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMVY 594

Query: 316 LDEMGDKGCKANPISYNVIL 335
           L +M  +G   N  ++NV++
Sbjct: 595 LLKMLYEGICPNEATWNVLV 614



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 8/101 (7%)

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
           LG ++  VR        +Y+ L+ AL +         +   M++ G  PN  TYN LI  
Sbjct: 115 LGCRDPGVR--------VYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRA 166

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            C+ +  +AA  +LDEM  KGC  + +S+  I+ G+CK G+
Sbjct: 167 LCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGR 207



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 7/143 (4%)

Query: 208 KLKEDIMRVYNVKPD------GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
           K+  D  R    +PD       +   + ++ L A G++       +EM    +       
Sbjct: 30  KIPADPSRTERPRPDPGSGDSARHHEATVRRLAAAGDVDGVQYALQEMRLRGVACTEDAL 89

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCK-PNSVTYNALISGFCKEEDFEAAFTILDEMG 320
            + I A  +AG  +          + GC+ P    YN L+    +E    A   + D M 
Sbjct: 90  VAAIGAFARAGSADRALKTFYRASDLGCRDPGVRVYNHLLDALLRENMVGAVVPVYDNMR 149

Query: 321 DKGCKANPISYNVILGGLCKDGK 343
             G   N  +YN+++  LC++ +
Sbjct: 150 KAGVDPNVYTYNLLIRALCQNDR 172


>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
 gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 439

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 161/333 (48%), Gaps = 21/333 (6%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L R +    LA + F+  +   N         + +++  Y  +I  L + + +  +  ++
Sbjct: 29  LRRFENAGMLAYRFFEWASKQRN---------YVHSVRAYHSMIESLAKIRQYQMVWDLV 79

Query: 71  HQLKHDTRIVPKEII----FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126
           + +++      KEI+    FC ++  Y RA+ +E A+  F+ M  +N++  V  FN LL+
Sbjct: 80  NAMRN------KEILNVEAFCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVAAFNGLLS 133

Query: 127 PKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
                  + + +E+F  M+    PD+ +Y+ILI G   +  L  A +++ EM+     P 
Sbjct: 134 ALCKSKNVRKAQEIFDNMKDQFVPDSKTYSILIEGWGRAPNLPKAREIYREMIDSGCIPD 193

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
            VT+  ++  LC   RVDEA+++ ++ M   N KP   +++ L+        +  A+   
Sbjct: 194 EVTYSIMVDVLCKAGRVDEAVEIVKE-MDYNNCKPSSFIYSVLVHTYGVENRIEDAVSTF 252

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
            EM R+ +  D   Y++LISA  KA +      +LK+M  +G  PNS T N +I+     
Sbjct: 253 LEMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMDLKGVNPNSRTCNIIINSLIGR 312

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
            + + AF I   M  K C+ +  SY +I+   C
Sbjct: 313 GETDEAFKIFRRM-IKVCEPDVDSYTMIIKMFC 344



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 148/314 (47%), Gaps = 12/314 (3%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           N  E + +KP   N+  ++ +++ L ++K   + Q+I   +K   + VP    +  +I  
Sbjct: 114 NVMEKYNMKP---NVAAFNGLLSALCKSKNVRKAQEIFDNMKD--QFVPDSKTYSILIEG 168

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPD 151
           +GRA  L +A +++ EM           ++ +++     G++D   E+ + M+     P 
Sbjct: 169 WGRAPNLPKAREIYREMIDSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKPS 228

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
           +  Y++L+H   V  R+EDA   F EM +  +   +  +  LI   C   ++    ++ +
Sbjct: 229 SFIYSVLVHTYGVENRIEDAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVLK 288

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           D M +  V P+ +    +I  L   GE   A  +   M++   E D   Y+ +I      
Sbjct: 289 D-MDLKGVNPNSRTCNIIINSLIGRGETDEAFKIFRRMIK-VCEPDVDSYTMIIKMF--C 344

Query: 272 GRKNEFPA--ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           GRK    A  I K MK++   P+  T++ LI+G C+  +   A  +L+EM +KG + +  
Sbjct: 345 GRKELDMALKIWKYMKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIRPSGA 404

Query: 330 SYNVILGGLCKDGK 343
           ++  +   L K+G+
Sbjct: 405 TFGRLRHLLIKEGR 418



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 108/231 (46%), Gaps = 2/231 (0%)

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAW 172
           N   +V+ +++++       +   + +L   M      +  ++ I++     ++++E+A 
Sbjct: 51  NYVHSVRAYHSMIESLAKIRQYQMVWDLVNAMRNKEILNVEAFCIIMRKYARAQKVEEAV 110

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
             F+ M K  ++P +  F  L+  LC    V +A ++ +++   +   PD + ++ LI+G
Sbjct: 111 YTFNVMEKYNMKPNVAAFNGLLSALCKSKNVRKAQEIFDNMKDQF--VPDSKTYSILIEG 168

Query: 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
                 L  A  +  EM+      D   YS ++  L KAGR +E   I+KEM    CKP+
Sbjct: 169 WGRAPNLPKAREIYREMIDSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKPS 228

Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           S  Y+ L+  +  E   E A +   EM   G  A+  +YN ++   CK  K
Sbjct: 229 SFIYSVLVHTYGVENRIEDAVSTFLEMERNGVMADVAAYNALISAFCKANK 279



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 122/242 (50%), Gaps = 14/242 (5%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y +++  L +A   DE  +I+ ++ ++    P   I+  ++  YG    +E A+  F EM
Sbjct: 197 YSIMVDVLCKAGRVDEAVEIVKEMDYNN-CKPSSFIYSVLVHTYGVENRIEDAVSTFLEM 255

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME----KYVSPDACSYNILIHGCVVS 165
               V   V  +N L++    C K ++MK ++++++    K V+P++ + NI+I+  +  
Sbjct: 256 ERNGVMADVAAYNALISA--FC-KANKMKNVYRVLKDMDLKGVNPNSRTCNIIINSLIGR 312

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
              ++A+K+F  M+K   +P + ++  +I   C    +D ALK+ +  M+     P    
Sbjct: 313 GETDEAFKIFRRMIKV-CEPDVDSYTMIIKMFCGRKELDMALKIWK-YMKKKQFVPSMHT 370

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           F+ LI GLC +G  + A  + EEM+   I      +  L   L K GRK+    +LK ++
Sbjct: 371 FSVLINGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHLLIKEGRKD----VLKFLQ 426

Query: 286 ER 287
           E+
Sbjct: 427 EK 428



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 107/229 (46%), Gaps = 3/229 (1%)

Query: 116 MTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKV 174
           + V+ F  ++       K++     F +MEKY + P+  ++N L+     S+ +  A ++
Sbjct: 88  LNVEAFCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVAAFNGLLSALCKSKNVRKAQEI 147

Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
           FD M K +  P   T+  LI G      + +A ++  +++    + PD   ++ ++  LC
Sbjct: 148 FDNM-KDQFVPDSKTYSILIEGWGRAPNLPKAREIYREMIDSGCI-PDEVTYSIMVDVLC 205

Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
             G +  A+ + +EM  +  +  + IYS L+       R  +  +   EM+  G   +  
Sbjct: 206 KAGRVDEAVEIVKEMDYNNCKPSSFIYSVLVHTYGVENRIEDAVSTFLEMERNGVMADVA 265

Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            YNALIS FCK    +  + +L +M  KG   N  + N+I+  L   G+
Sbjct: 266 AYNALISAFCKANKMKNVYRVLKDMDLKGVNPNSRTCNIIINSLIGRGE 314


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 164/335 (48%), Gaps = 42/335 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERAL 103
           ++  Y+ +I+   +A   D   ++L ++K   R    +++  N++   F GR RL + AL
Sbjct: 145 DVFAYNAVISGFCKADRVDHASKVLDRMKK--RGFEPDVVTYNILIGNFCGRGRL-DLAL 201

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHG- 161
           ++ D++   N + TV  +  L+   +T G +D  MK L +++ + + PD  +YN++++G 
Sbjct: 202 RVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGM 261

Query: 162 --------------------CVVS--------RRL--EDAW----KVFDEMVKRRLQPTL 187
                               CV          R L  E  W    K+  +M+ +  +P  
Sbjct: 262 CKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNP 321

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           +T+ TLI  LC + ++DEA  + + +M+   + PDG  +  LI  LC  G++ LA+   +
Sbjct: 322 ITYSTLITALCRDGKIDEAKNVLK-VMKEKALAPDGYSYDPLISALCREGKVDLAIEFLD 380

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           +M+      D   Y+S++++L K G  +E   I +++ E GC PN+ +YN L        
Sbjct: 381 DMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSG 440

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           D   A  ++ EM   G   + I+YN ++  LC+DG
Sbjct: 441 DKIRALGMILEMLSNGIDPDEITYNSLISCLCRDG 475



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 131/270 (48%), Gaps = 1/270 (0%)

Query: 74  KHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133
           KHD     ++  F   +    ++   + +L     M +   +  V     L+       K
Sbjct: 68  KHDQDYDFRDTNFMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKK 127

Query: 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           +++  ++ +I+EK+  PD  +YN +I G   + R++ A KV D M KR  +P +VT+  L
Sbjct: 128 IEKAIQVMEILEKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNIL 187

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I   C   R+D AL++ + +++  N KP    +  LI+     G +  A+ + +EM+   
Sbjct: 188 IGNFCGRGRLDLALRVMDQLLK-DNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRG 246

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
           +  D   Y+ +++ + K G  +     L  + + GC     TYN L+     E  +E   
Sbjct: 247 LRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGE 306

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ++ +M  KGC+ NPI+Y+ ++  LC+DGK
Sbjct: 307 KLMSDMLVKGCEPNPITYSTLITALCRDGK 336



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 144/288 (50%), Gaps = 8/288 (2%)

Query: 59  RAKMFDEMQQILHQLKHDTRIVPKEIIFCN--VIGFYGRARLLERALQMFDEMSSFNVQM 116
           ++  +DE    L  + +  R    ++I C   + GF+   ++ E+A+Q+ + +     + 
Sbjct: 89  KSAKYDESLYFLQHMVN--RGYKPDVILCTKLIKGFFNMKKI-EKAIQVMEILEKHG-KP 144

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
            V  +N +++      ++D   ++   M+K    PD  +YNILI       RL+ A +V 
Sbjct: 145 DVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVM 204

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           D+++K   +PT++T+  LI     +  +DEA+KL ++++    ++PD   +  ++ G+C 
Sbjct: 205 DQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLS-RGLRPDRYTYNVVVNGMCK 263

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G L  A      + ++        Y+ L+  L   G+      ++ +M  +GC+PN +T
Sbjct: 264 EGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPIT 323

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y+ LI+  C++   + A  +L  M +K    +  SY+ ++  LC++GK
Sbjct: 324 YSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGK 371



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 117/220 (53%), Gaps = 3/220 (1%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           ++TL+      GK+D  K + ++M EK ++PD  SY+ LI       +++ A +  D+M+
Sbjct: 324 YSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMI 383

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
                P ++++ +++  LC     DEAL + E +  V    P+   + +L   L + G+ 
Sbjct: 384 SGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEV-GCPPNAGSYNTLFGALWSSGDK 442

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE-RGCKPNSVTYNA 298
             ALG+  EM+ + I+ D   Y+SLIS L + G  ++   +L +M E   C+P  ++YN 
Sbjct: 443 IRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNT 502

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           ++ G CK +    A  +L  M ++GC  N  +Y +++ G+
Sbjct: 503 VLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQGI 542



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 2/230 (0%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y  +IT L R    DE + +L  +K +  + P    +  +I    R   ++ A++ 
Sbjct: 320 NPITYSTLITALCRDGKIDEAKNVLKVMK-EKALAPDGYSYDPLISALCREGKVDLAIEF 378

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
            D+M S      +  +N++L      G  D    +F+ + E    P+A SYN L      
Sbjct: 379 LDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWS 438

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S     A  +  EM+   + P  +T+ +LI  LC +  VD+A++L  D+      +P   
Sbjct: 439 SGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVI 498

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
            + +++ GLC V  +  A+ V   MV +    +   Y+ LI  +  AG +
Sbjct: 499 SYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQGIGFAGWR 548


>gi|255660880|gb|ACU25609.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 484

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 165/325 (50%), Gaps = 15/325 (4%)

Query: 31  NPNDTEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVP 81
           + + T  H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +  
Sbjct: 20  HSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEW 78

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
            E ++  +I  YG+  +++ +++MF +M    V+ T+K +N L    L  G+    K  F
Sbjct: 79  DEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNXLFKVILRRGRYMMAKRYF 138

Query: 142 -QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
            +++ + + P   ++N++I G  +S ++E A + F++M  R + P +VT+ T+I G    
Sbjct: 139 NKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRV 198

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            +++EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  
Sbjct: 199 KKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAIT 257

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDE 318
           YS+L+  L  A + +E   ILKEM ++   P  NS+ +  LIS  CK  + +AA  +L  
Sbjct: 258 YSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSI-FMRLISSHCKSGNLDAAADVLKA 316

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M           Y  ++   CK G+
Sbjct: 317 MIRLSVPTEAGHYGXLIENFCKXGQ 341



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 129/263 (49%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F++M S  +   V  +NT++N      K++  ++ F  M+ + 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   +++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + +++M  Y    D  +F  LI   C  G L  A  V + M+R  +  +AG Y  LI  
Sbjct: 276 VILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             K G+ ++   +L ++ E+    +P S        YN +I   C       A T++ ++
Sbjct: 336 FCKXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQAXKAETLVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +P + N ++ G  ++G
Sbjct: 396 XKLGVQ-DPTALNTLIRGHSQEG 417



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 123/285 (43%), Gaps = 45/285 (15%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + +  +I  Y R + +E A + F EM   N++ TV  + TL+   ++  ++D   
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT-FGTLIYG 196
            L + M+ + + P+A +Y+ L+ G   + ++ +A  +  EM+ + L PT  + F  LI  
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI-- 254
            C    +D A  + + ++R+ +V  +   +  LI+  C  G+   A+ + ++++   I  
Sbjct: 301 HCKSGNLDAAADVLKAMIRL-SVPTEAGHYGXLIENFCKXGQYDKAVKLLDKLIEKDIIL 359

Query: 255 ------EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK-----------------P 291
                  ++   Y+ +I  L   G+  +   +++++ + G +                 P
Sbjct: 360 RPQSTLHLEPSAYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSP 419

Query: 292 NSV-----------------TYNALISGFCKEEDFEAAFTILDEM 319
           +S                   YN+L+    K+ +   A   LD M
Sbjct: 420 DSAFELLKIMLRRKVBSEKSAYNSLVQSXLKKNEPXDAKAALDSM 464



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 128/313 (40%), Gaps = 47/313 (15%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D ++  + P   +++ Y+ +I    R K  +E ++   ++K    I P  + +  +I  Y
Sbjct: 175 DMKSREISP---DVVTYNTMINGYYRVKKMEEAEKYFVEMK-GRNIEPTVVTYTTLIKGY 230

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSP-D 151
                ++ AL++ +EM  F ++     ++TLL       K+   + +  ++M+KY++P D
Sbjct: 231 VSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-- 209
              +  LI     S  L+ A  V   M++  +      +G LI   C   + D+A+KL  
Sbjct: 291 NSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFCKXGQYDKAVKLLD 350

Query: 210 ----KEDIMR---VYNVKP--------------------------------DGQVFASLI 230
               K+ I+R     +++P                                D     +LI
Sbjct: 351 KLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLI 410

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
           +G    G    A  + + M+R K++ +   Y+SL+ +  K     +  A L  M E    
Sbjct: 411 RGHSQEGSPDSAFELLKIMLRRKVBSEKSAYNSLVQSXLKKNEPXDAKAALDSMIENDHL 470

Query: 291 PNSVTYNALISGF 303
           P+S  + +++   
Sbjct: 471 PDSALFRSVMESL 483


>gi|255661006|gb|ACU25672.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 376

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 128/241 (53%), Gaps = 1/241 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL 158
           ++ A +++ ++    V      +N +LN     G++    EL+++M +  S    S+NI+
Sbjct: 6   IDGAERVYKDIVESKVSPDAVVYNAMLNGFYRAGRMKDCFELWEMMGREGSRSVASFNIM 65

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           + G   +R++E+A  +++ M K       VT+G L++G C    ++++L + E I     
Sbjct: 66  MRGLFDNRKVEEAMSIWELMTKSGFVEDSVTYGILVHGFCKNGYINKSLHILE-IAEQKG 124

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
              D   ++++I  LC   +L  A+ V   M+R   + +  +Y++LI  L  A ++++  
Sbjct: 125 GVLDAFAYSAMINALCKESKLEKAVSVLNGMIRSGCKPNTHVYNALIKGLIGASKRDDAV 184

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            I +EM    C PN  TY+ LI G CK E F  A+ ++ EM +KG   + I+Y++++ GL
Sbjct: 185 RIFREMGTTDCPPNIATYSILIDGLCKGERFGEAYDLVKEMLEKGLNPSVITYSLLMKGL 244

Query: 339 C 339
           C
Sbjct: 245 C 245



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 114/210 (54%), Gaps = 3/210 (1%)

Query: 132 GKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           G +D  + +++ I+E  VSPDA  YN +++G   + R++D ++++ EM+ R    ++ +F
Sbjct: 4   GDIDGAERVYKDIVESKVSPDAVVYNAMLNGFYRAGRMKDCFELW-EMMGREGSRSVASF 62

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
             ++ GL    +V+EA+ + E +M       D   +  L+ G C  G ++ +L + E   
Sbjct: 63  NIMMRGLFDNRKVEEAMSIWE-LMTKSGFVEDSVTYGILVHGFCKNGYINKSLHILEIAE 121

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
           +    +DA  YS++I+AL K  +  +  ++L  M   GCKPN+  YNALI G       +
Sbjct: 122 QKGGVLDAFAYSAMINALCKESKLEKAVSVLNGMIRSGCKPNTHVYNALIKGLIGASKRD 181

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCK 340
            A  I  EMG   C  N  +Y++++ GLCK
Sbjct: 182 DAVRIFREMGTTDCPPNIATYSILIDGLCK 211



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 109/242 (45%), Gaps = 37/242 (15%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           LE+A+ + + M     +     +N L+   +   K D    +F+ M      P+  +Y+I
Sbjct: 145 LEKAVSVLNGMIRSGCKPNTHVYNALIKGLIGASKRDDAVRIFREMGTTDCPPNIATYSI 204

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G     R  +A+ +  EM+++ L P+++T+  L+ GLCL  +V+ AL+L   + +  
Sbjct: 205 LIDGLCKGERFGEAYDLVKEMLEKGLNPSVITYSLLMKGLCLGHKVEMALQLWNQVTK-K 263

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             KPD Q+   LI GLC+VG+  LAL                                  
Sbjct: 264 GFKPDVQMHNILIHGLCSVGKTQLAL---------------------------------- 289

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            ++  +M    C PN VT N L+ GF K+ +   A  I   +     + + ISYN+ L G
Sbjct: 290 -SLYLDMNRWNCAPNLVTQNTLMEGFYKDGNVRNALVIWARILKNELQPDIISYNITLKG 348

Query: 338 LC 339
           LC
Sbjct: 349 LC 350



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 58/109 (53%), Gaps = 1/109 (0%)

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           C  G++  A  V +++V  K+  DA +Y+++++  ++AGR  +   + + M   G + + 
Sbjct: 1   CESGDIDGAERVYKDIVESKVSPDAVVYNAMLNGFYRAGRMKDCFELWEMMGREGSR-SV 59

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            ++N ++ G       E A +I + M   G   + ++Y +++ G CK+G
Sbjct: 60  ASFNIMMRGLFDNRKVEEAMSIWELMTKSGFVEDSVTYGILVHGFCKNG 108



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 83/171 (48%), Gaps = 2/171 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y ++I  L + + F E   ++ ++  +  + P  I +  ++        +E ALQ+
Sbjct: 198 NIATYSILIDGLCKGERFGEAYDLVKEML-EKGLNPSVITYSLLMKGLCLGHKVEMALQL 256

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           +++++    +  V+  N L++   + GK      L+  M ++  +P+  + N L+ G   
Sbjct: 257 WNQVTKKGFKPDVQMHNILIHGLCSVGKTQLALSLYLDMNRWNCAPNLVTQNTLMEGFYK 316

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
              + +A  ++  ++K  LQP ++++   + GLC   R+ +A+    D +R
Sbjct: 317 DGNVRNALVIWARILKNELQPDIISYNITLKGLCSCNRISDAIWFLHDAVR 367



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 3/206 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I  L  A   D+  +I  ++   T   P    +  +I    +      A  +  EM
Sbjct: 167 YNALIKGLIGASKRDDAVRIFREMG-TTDCPPNIATYSILIDGLCKGERFGEAYDLVKEM 225

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
               +  +V  ++ L+       K++   +L+ Q+ +K   PD   +NILIHG     + 
Sbjct: 226 LEKGLNPSVITYSLLMKGLCLGHKVEMALQLWNQVTKKGFKPDVQMHNILIHGLCSVGKT 285

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A  ++ +M +    P LVT  TL+ G   +  V  AL +   I++   ++PD   +  
Sbjct: 286 QLALSLYLDMNRWNCAPNLVTQNTLMEGFYKDGNVRNALVIWARILK-NELQPDIISYNI 344

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKI 254
            +KGLC+   +S A+    + VR KI
Sbjct: 345 TLKGLCSCNRISDAIWFLHDAVRKKI 370



 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           AL ++ +M+ +N    +   NTL+      G +     ++ +I++  + PD  SYNI + 
Sbjct: 288 ALSLYLDMNRWNCAPNLVTQNTLMEGFYKDGNVRNALVIWARILKNELQPDIISYNITLK 347

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
           G     R+ DA     + V++++ PT +T
Sbjct: 348 GLCSCNRISDAIWFLHDAVRKKIIPTKIT 376


>gi|357115508|ref|XP_003559530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g01570-like [Brachypodium distachyon]
          Length = 768

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 127/243 (52%), Gaps = 6/243 (2%)

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP---DACSYNILIH 160
            +FDEMS   +   ++F+N  ++      +LD+  +LF  M+    P   D C+YN +I 
Sbjct: 208 HVFDEMSRRGLPTNLRFYNICIHAFGKWRRLDKSLKLFATMKAATPPLVPDVCTYNSVIR 267

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
             V+  R+ DA  VFDEM    + P + T+  ++ G C   R+D+AL++ +++     +K
Sbjct: 268 VLVIGGRVADALVVFDEMKLAGIHPDVFTYRAVVDGCCKSFRMDDALRMFQEMRGSIGLK 327

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
            D  V+ SL+ GL    +L  A G  E MV D I+  A  ++++I  LFK GR      +
Sbjct: 328 GDVVVYNSLLDGLFKAKKLDEACGFIETMVADGIQCSASTHNTVIDGLFKNGRAEAACRL 387

Query: 281 LKEMKERGCKPNSVTYNALISGFCKE---EDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             E++++G   + + Y+ ++  FCKE   +  E A  ++ EM ++G   + ++   +L G
Sbjct: 388 FYELRKKGQLLDGIAYSIMVREFCKEGTGDQVEEAVGLVKEMEERGFVIDLVTITSLLIG 447

Query: 338 LCK 340
             K
Sbjct: 448 FNK 450



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 2/178 (1%)

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN-VKPDGQVFA 227
           +D   VFDEM +R L   L  +   I+      R+D++LKL   +      + PD   + 
Sbjct: 204 DDFCHVFDEMSRRGLPTNLRFYNICIHAFGKWRRLDKSLKLFATMKAATPPLVPDVCTYN 263

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           S+I+ L   G ++ AL V +EM    I  D   Y +++    K+ R ++   + +EM+  
Sbjct: 264 SVIRVLVIGGRVADALVVFDEMKLAGIHPDVFTYRAVVDGCCKSFRMDDALRMFQEMRGS 323

Query: 288 -GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
            G K + V YN+L+ G  K +  + A   ++ M   G + +  ++N ++ GL K+G+ 
Sbjct: 324 IGLKGDVVVYNSLLDGLFKAKKLDEACGFIETMVADGIQCSASTHNTVIDGLFKNGRA 381



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 61/114 (53%)

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   +  +I+GL  +G+  +A  V +E+ +  + MD  +Y++LI+ L K G+  E   +L
Sbjct: 641 DIATYNLIIQGLGQMGKTEVASSVMDELSKKGVYMDIVMYNTLINQLGKVGKVEEANCLL 700

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +++  RG KP+ VT+N LI+   K    + A   L  M  +G   N  +  +++
Sbjct: 701 EQIITRGMKPDVVTFNTLININAKAGRLKEADKYLRRMIAEGIAPNHATETILI 754



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 4/148 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQMFDE 108
           Y+ ++T   +     ++  +LH+     ++ P +I   N +I   G+    E A  + DE
Sbjct: 610 YNSLMTSFVKKGYLKQVWAVLHE--RGGQLCPNDIATYNLIIQGLGQMGKTEVASSVMDE 667

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRR 167
           +S   V M +  +NTL+N     GK++    L  QI+ + + PD  ++N LI+    + R
Sbjct: 668 LSKKGVYMDIVMYNTLINQLGKVGKVEEANCLLEQIITRGMKPDVVTFNTLININAKAGR 727

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
           L++A K    M+   + P   T   LI+
Sbjct: 728 LKEADKYLRRMIAEGIAPNHATETILIF 755



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 59/122 (48%)

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D  +  + +    A G+LS+A  + E       +  +  Y+SL+++  K G   +  A+L
Sbjct: 571 DADMVNTYMSIFLAKGKLSVACKLFEIFTNLGRKGTSYTYNSLMTSFVKKGYLKQVWAVL 630

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            E   + C  +  TYN +I G  +    E A +++DE+  KG   + + YN ++  L K 
Sbjct: 631 HERGGQLCPNDIATYNLIIQGLGQMGKTEVASSVMDELSKKGVYMDIVMYNTLINQLGKV 690

Query: 342 GK 343
           GK
Sbjct: 691 GK 692



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 2/180 (1%)

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC-SYNILIHGCVVSRRLEDAWKVFDEMVK 180
           NT ++  L  GKL    +LF+I           +YN L+   V    L+  W V  E   
Sbjct: 576 NTYMSIFLAKGKLSVACKLFEIFTNLGRKGTSYTYNSLMTSFVKKGYLKQVWAVLHERGG 635

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           +     + T+  +I GL    + + A  + +++ +   V  D  ++ +LI  L  VG++ 
Sbjct: 636 QLCPNDIATYNLIIQGLGQMGKTEVASSVMDELSK-KGVYMDIVMYNTLINQLGKVGKVE 694

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  + E+++   ++ D   +++LI+   KAGR  E    L+ M   G  PN  T   LI
Sbjct: 695 EANCLLEQIITRGMKPDVVTFNTLININAKAGRLKEADKYLRRMIAEGIAPNHATETILI 754


>gi|255660894|gb|ACU25616.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 481

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 165/325 (50%), Gaps = 15/325 (4%)

Query: 31  NPNDTEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVP 81
           + + T  H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +  
Sbjct: 20  HSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEW 78

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
            E ++  +I  YG+  +++ +++MF +M    V+ T+K +N L    L  G+    K  F
Sbjct: 79  DEDMWVMMIDSYGKQGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYF 138

Query: 142 -QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
            +++ + + P   ++N++I G  +S ++E   + F++M  R + P +VT+ T+I G    
Sbjct: 139 NKMLSEGIEPTRHTFNVMIWGFFLSGKVETXNRFFEDMKSREISPDVVTYNTMINGYYRV 198

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            +++EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  
Sbjct: 199 KKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAIT 257

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDE 318
           YS+L+  L  A + +E   ILKEM ++   P  NS+ +  LIS  CK  + +AA  +L  
Sbjct: 258 YSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSI-FMRLISSHCKSGNLDAAADVLKA 316

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M           Y V++   CK G+
Sbjct: 317 MIRLSVPTEAGHYGVLIENFCKVGQ 341



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/285 (20%), Positives = 124/285 (43%), Gaps = 45/285 (15%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + +  +I  Y R + +E A + F EM   N++ TV  + TL+   ++  ++D   
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT-FGTLIYG 196
            L + M+ + + P+A +Y+ L+ G   + ++ +A  +  EM+ + L PT  + F  LI  
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI-- 254
            C    +D A  + + ++R+ +V  +   +  LI+  C VG+   A+ + ++++   I  
Sbjct: 301 HCKSGNLDAAADVLKAMIRL-SVPTEAGHYGVLIENFCKVGQYDKAVKLLDKLIEKDIIL 359

Query: 255 ------EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK-----------------P 291
                  ++   Y+  I  L   G+  +   +++++ + G +                 P
Sbjct: 360 RPQSTLHLEPSAYNPXIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGXSQEGSP 419

Query: 292 NSV-----------------TYNALISGFCKEEDFEAAFTILDEM 319
           +S                   YN+L+  + K+ +   A   LD M
Sbjct: 420 DSAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSM 464



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/310 (20%), Positives = 128/310 (41%), Gaps = 47/310 (15%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D ++  + P   +++ Y+ +I    R K  +E ++   ++K    I P  + +  +I  Y
Sbjct: 175 DMKSREISP---DVVTYNTMINGYYRVKKMEEAEKYFVEMK-GRNIEPTVVTYTTLIKGY 230

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSP-D 151
                ++ AL++ +EM  F ++     ++TLL       K+   + +  ++M+KY++P D
Sbjct: 231 VSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-- 209
              +  LI     S  L+ A  V   M++  +      +G LI   C   + D+A+KL  
Sbjct: 291 NSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKVGQYDKAVKLLD 350

Query: 210 ----KEDIMR---VYNVKP--------------------------------DGQVFASLI 230
               K+ I+R     +++P                                D     +LI
Sbjct: 351 KLIEKDIILRPQSTLHLEPSAYNPXIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLI 410

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
           +G    G    A  + + M+R K++ +   Y+SL+ +  K     +  A L  M E    
Sbjct: 411 RGXSQEGSPDSAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHL 470

Query: 291 PNSVTYNALI 300
           P+S  + +++
Sbjct: 471 PDSXLFRSVM 480


>gi|359496222|ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13150-like [Vitis vinifera]
          Length = 379

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 146/306 (47%), Gaps = 6/306 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQIL-HQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           K FR    +Y+  +  L +AK F  ++ IL HQ +++   +  E+    ++  YG+A + 
Sbjct: 51  KRFRSRYGYYEKAVLTLAKAKKFSFIEDILEHQKQYNE--ISTEVFAVRLMTLYGKAGMF 108

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY--VSPDACSYNI 157
           E A ++FDE+   N + TV  FN LL+  +   K D++   FQ +     V PD  SYNI
Sbjct: 109 EHAHKLFDELPKLNCERTVVSFNALLSVCVNSKKFDKIDGFFQELPGNLGVVPDVVSYNI 168

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +++       L+ A  V DEM K  L+P L+TF TL+          +  K+  D+M+  
Sbjct: 169 IVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKI-WDLMKKN 227

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           NV P+ + + + ++G+ +   +S A+ + +EM    I+ D    +SL+     AG   E 
Sbjct: 228 NVAPNVRSYNAKLRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNLEEA 287

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
                E+      P   TY  LI    ++ DF+ A  +  E+  +     P     +L G
Sbjct: 288 KRWYSEIARNELPPVRATYMTLIPFLVEKGDFDMATELCKEVCSRRWLIEPALLQQVLEG 347

Query: 338 LCKDGK 343
           L K+ K
Sbjct: 348 LVKESK 353


>gi|357455187|ref|XP_003597874.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359582|gb|ABD28711.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486922|gb|AES68125.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 822

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 153/306 (50%), Gaps = 17/306 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y++II    +        ++  +LK     +P    +  +I  + +A   +   Q+
Sbjct: 239 NVVFYNVIIDGYCKKGDLKRATRVFEELKLKG-FLPTLETYGALIDGFCKAGKFQVVDQL 297

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            +EM+   + + VK FN++++ K   G +D+  E+ ++M E    PD  +YNILI+    
Sbjct: 298 LNEMNVMGLNVNVKVFNSIIDAKYKYGLVDKAAEMMRMMTEMGCEPDITTYNILINFSCS 357

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE----LRVDEALKLKEDIMRVYNVK 220
             R+++A +  +   +R L P   ++  L++  C +    +  D   K+ E        K
Sbjct: 358 GGRIKEAEEFLERAKERTLLPNKFSYTPLMHAYCKQGDYVMASDMLFKIAET-----GDK 412

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA- 279
           PD   + + I G  A GE+ +AL V+E+M+   +  DA IY+ L+S L K GR   FPA 
Sbjct: 413 PDLVSYGAFIHGSVAGGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKKGR---FPAA 469

Query: 280 --ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +L EM +   +P++  Y  L+ GF +  + + A  + + +  KG     + YNV++ G
Sbjct: 470 KLLLSEMLDLNLQPDAYMYATLVDGFIRNNELDKATELFEVVMSKGIDPGVVGYNVMIKG 529

Query: 338 LCKDGK 343
           LCK GK
Sbjct: 530 LCKCGK 535



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 154/344 (44%), Gaps = 44/344 (12%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI---IFCNVIGF 92
           E   LK F   L  Y  +I    +A  F    Q++ QL ++  ++   +   +F ++I  
Sbjct: 264 EELKLKGFLPTLETYGALIDGFCKAGKF----QVVDQLLNEMNVMGLNVNVKVFNSIIDA 319

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK-------LDRMKE------ 139
             +  L+++A +M   M+    +  +  +N L+N   + G+       L+R KE      
Sbjct: 320 KYKYGLVDKAAEMMRMMTEMGCEPDITTYNILINFSCSGGRIKEAEEFLERAKERTLLPN 379

Query: 140 -----------------------LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFD 176
                                  LF+I E    PD  SY   IHG V    ++ A  V +
Sbjct: 380 KFSYTPLMHAYCKQGDYVMASDMLFKIAETGDKPDLVSYGAFIHGSVAGGEIDVALMVRE 439

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
           +M+++ + P    +  L+ GLC + R   A  L  +++ + N++PD  ++A+L+ G    
Sbjct: 440 KMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEMLDL-NLQPDAYMYATLVDGFIRN 498

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
            EL  A  + E ++   I+     Y+ +I  L K G+  +  + + +MK     P+  T+
Sbjct: 499 NELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIANHAPDEYTH 558

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + +I G+ K+ D ++A  +  +M  +  K N ++Y  ++ G CK
Sbjct: 559 STVIDGYVKQHDLDSALKMFGQMMKQKYKPNVVAYTSLINGFCK 602



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 1/202 (0%)

Query: 142 QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
           ++MEK V PDA  YN+L+ G     R   A  +  EM+   LQP    + TL+ G     
Sbjct: 440 KMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEMLDLNLQPDAYMYATLVDGFIRNN 499

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
            +D+A +L E +M    + P    +  +IKGLC  G+++ A+    +M       D   +
Sbjct: 500 ELDKATELFEVVMS-KGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIANHAPDEYTH 558

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           S++I    K    +    +  +M ++  KPN V Y +LI+GFCK  D   A  +   M  
Sbjct: 559 STVIDGYVKQHDLDSALKMFGQMMKQKYKPNVVAYTSLINGFCKIADMSRAEKVFRAMQS 618

Query: 322 KGCKANPISYNVILGGLCKDGK 343
              + N ++Y +++GG  K GK
Sbjct: 619 FNLEPNVVTYTILIGGFSKTGK 640



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 118/241 (48%), Gaps = 2/241 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
           ++ AL + ++M    V    + +N L++     G+    K L  ++++  + PDA  Y  
Sbjct: 431 IDVALMVREKMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEMLDLNLQPDAYMYAT 490

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L+ G + +  L+ A ++F+ ++ + + P +V +  +I GLC   ++ +A+      M++ 
Sbjct: 491 LVDGFIRNNELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNK-MKIA 549

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N  PD    +++I G     +L  AL +  +M++ K + +   Y+SLI+   K    +  
Sbjct: 550 NHAPDEYTHSTVIDGYVKQHDLDSALKMFGQMMKQKYKPNVVAYTSLINGFCKIADMSRA 609

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + + M+    +PN VTY  LI GF K    E A +  + M    C  N  +++ ++ G
Sbjct: 610 EKVFRAMQSFNLEPNVVTYTILIGGFSKTGKPEKAASFFELMLMNNCLPNDTTFHYLING 669

Query: 338 L 338
           L
Sbjct: 670 L 670



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 144/307 (46%), Gaps = 15/307 (4%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+++++ L +   F   + +L ++  D  + P   ++  ++  + R   L++A ++F+ +
Sbjct: 453 YNVLMSGLCKKGRFPAAKLLLSEML-DLNLQPDAYMYATLVDGFIRNNELDKATELFEVV 511

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168
            S  +   V  +N ++     CGK+ D +  + ++     +PD  +++ +I G V    L
Sbjct: 512 MSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIANHAPDEYTHSTVIDGYVKQHDL 571

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A K+F +M+K++ +P +V + +LI G C    +  A K+    M+ +N++P+   +  
Sbjct: 572 DSALKMFGQMMKQKYKPNVVAYTSLINGFCKIADMSRAEKVFR-AMQSFNLEPNVVTYTI 630

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL---------FKAGRKNEFPA 279
           LI G    G+   A    E M+ +    +   +  LI+ L          +   +N+   
Sbjct: 631 LIGGFSKTGKPEKAASFFELMLMNNCLPNDTTFHYLINGLTNITNTTLLIEKNEENDRSL 690

Query: 280 IL---KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
           IL     M   G      TYN++I   CK    + A  +  +M  KG   + + ++ +L 
Sbjct: 691 ILDFFATMISEGWSQVIATYNSIIVCLCKHGMVDTAQLLQTKMLRKGFLMDSVCFSALLH 750

Query: 337 GLCKDGK 343
           GLC+ GK
Sbjct: 751 GLCQTGK 757



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 17/209 (8%)

Query: 147 YVSP-DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI-----YGLCLE 200
           + SP +  +Y+ L+   V  R   +   V ++M  R  +PTL    ++I     YG    
Sbjct: 87  FSSPLNNVAYSSLLKLMVKYRLFSEIEIVLEDMKNRNFKPTLEALNSVICVYAEYGF--- 143

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR----DKIEM 256
             VD+A+K+   +  +YN  P      SL+  L   G++ +A  + ++M+       +++
Sbjct: 144 --VDKAVKMFYMVCELYNCFPCVVANNSLLNCLVKNGKVDVACELYDKMLERGGDHGLDL 201

Query: 257 DAGIYSSLI--SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
               YS +I    L   G+  E   ++ +    GC PN V YN +I G+CK+ D + A  
Sbjct: 202 VVDNYSIVIVVKGLCDVGKVEEGRKLIDDRWGNGCVPNVVFYNVIIDGYCKKGDLKRATR 261

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + +E+  KG      +Y  ++ G CK GK
Sbjct: 262 VFEELKLKGFLPTLETYGALIDGFCKAGK 290



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 32/309 (10%)

Query: 47  LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMF 106
           ++ Y+++I  L +     +    ++++K      P E     VI  Y +   L+ AL+MF
Sbjct: 520 VVGYNVMIKGLCKCGKMTDAVSYVNKMKIANH-APDEYTHSTVIDGYVKQHDLDSALKMF 578

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVS 165
            +M     +  V  + +L+N       + R +++F+ M+ + + P+  +Y ILI G   +
Sbjct: 579 GQMMKQKYKPNVVAYTSLINGFCKIADMSRAEKVFRAMQSFNLEPNVVTYTILIGGFSKT 638

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC--------LELRVDEALKLKEDIMRVY 217
            + E A   F+ M+     P   TF  LI GL         +E   +    L  D     
Sbjct: 639 GKPEKAASFFELMLMNNCLPNDTTFHYLINGLTNITNTTLLIEKNEENDRSLILDFFATM 698

Query: 218 NVKPDGQVFA---SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
             +   QV A   S+I  LC  G +  A  ++ +M+R    MD+  +S+L+  L + G+ 
Sbjct: 699 ISEGWSQVIATYNSIIVCLCKHGMVDTAQLLQTKMLRKGFLMDSVCFSALLHGLCQTGKS 758

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            E+  I                   ISG   + DF+ AF    ++        P   + I
Sbjct: 759 KEWRNI-------------------ISGDLTKIDFQTAFEYSLKLDKYLYDGKPSEASYI 799

Query: 335 LGGLCKDGK 343
           L  L +D K
Sbjct: 800 LLNLIEDSK 808


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 130/266 (48%), Gaps = 2/266 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P    +  +I  Y + R LE A ++ +EM      + V  +NTL+      G ++   
Sbjct: 239 ISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAF 298

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
              + ME Y + PD  +Y  +I+G     R + A  + DEM    L P +V + TLI G 
Sbjct: 299 GYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGF 358

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
             +   DEA K+ ++ M    V+P+   + +LI+GLC +G +  A  + ++M +     D
Sbjct: 359 MRQGNADEAFKIVKE-MSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMAD 417

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+ +I    +   K E   +L EM++ G  PN  TY+ +I+G C+  + E A  +L+
Sbjct: 418 TMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLE 477

Query: 318 EMGDKGCKANPISYNVILGGLCKDGK 343
           +M   G K N   Y  ++ G C++G 
Sbjct: 478 QMIADGLKPNAFVYAPLISGYCREGS 503



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 142/300 (47%), Gaps = 7/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y +II  L +    +    +L Q+  D  + P   ++  +I  Y R      A + 
Sbjct: 452 NVYTYSIIINGLCQIGESERASGLLEQMIADG-LKPNAFVYAPLISGYCREGSFSLACET 510

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
             +M+  N+   +  +N+L+      GK+D   E + +++EK   P+  +Y  LIHG  +
Sbjct: 511 LKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSM 570

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI--MRVYNVKPD 222
           +  LE A ++  +M+   L P    +  ++ G     + D   K+   +  M    + PD
Sbjct: 571 AGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGY---FKSDNLEKVSSTLKSMLEKGLMPD 627

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
            +++  +I  L + G +  A+ V   + ++ +  D+ IY SLIS   KA    +   +L 
Sbjct: 628 NRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLD 687

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           EM ++G +P    YNALI GFCK +D   A  I + +  KG   N ++Y  ++ G CK G
Sbjct: 688 EMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAG 747



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 144/303 (47%), Gaps = 11/303 (3%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           N++ Y+ +I  L RA   +E      +++ D  +VP    +  +I G   R R  ++A  
Sbjct: 277 NVVTYNTLIGGLCRAGAIEEAFGYKKEME-DYGLVPDGFTYGAIINGLCKRGRP-DQAKC 334

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----VSPDACSYNILIH 160
           + DEMS   +   V  ++TL++  +  G  D   E F+I+++     V P+  +Y+ LI 
Sbjct: 335 LLDEMSCAGLMPNVVVYSTLIDGFMRQGNAD---EAFKIVKEMSAAGVQPNKITYDNLIR 391

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     R+  A ++  +M K       +T+  +I G   +   +EA  L  + MR   + 
Sbjct: 392 GLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNE-MRKGGIS 450

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   ++ +I GLC +GE   A G+ E+M+ D ++ +A +Y+ LIS   + G  +     
Sbjct: 451 PNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACET 510

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           LK+M      P+   YN+LI G       + A    DEM +KG + N  +Y  ++ G   
Sbjct: 511 LKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSM 570

Query: 341 DGK 343
            G 
Sbjct: 571 AGN 573



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 140/304 (46%), Gaps = 4/304 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K F+ N   Y  +I     A   ++ +Q+LHQ+  ++ + P + I+  ++  Y ++  LE
Sbjct: 552 KGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQML-NSGLNPNDFIYAQILEGYFKSDNLE 610

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
           +       M    +    + +  +++   + G +     +  ++EK  + PD+  Y  LI
Sbjct: 611 KVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLI 670

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G   +  +E A  + DEM K+ ++P +  +  LI G C    +  A  +   I+    +
Sbjct: 671 SGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSII-CKGL 729

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   + +LI G C  G++  A+ +  EM+ + +  DA +YS L +    +G   +   
Sbjct: 730 PPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALF 789

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           I +EM  RG    S ++N L+ GFCK    +     L  M DK    + ++   I+ GL 
Sbjct: 790 ITEEMIARGYAIIS-SFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLG 848

Query: 340 KDGK 343
           + GK
Sbjct: 849 EAGK 852



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 1/172 (0%)

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIK 231
           WKV   M    + P + T+ TLI   C    ++ A K+ E+ MR      +   + +LI 
Sbjct: 228 WKVRGFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEE-MRETGCSLNVVTYNTLIG 286

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           GLC  G +  A G K+EM    +  D   Y ++I+ L K GR ++   +L EM   G  P
Sbjct: 287 GLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMP 346

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           N V Y+ LI GF ++ + + AF I+ EM   G + N I+Y+ ++ GLCK G+
Sbjct: 347 NVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGR 398



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 135/299 (45%), Gaps = 4/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L  Y+ +I  L      DE  +   ++  +    P +  +  +I  Y  A  LE+A Q+
Sbjct: 522 DLYCYNSLIIGLSNVGKMDEAIEYYDEML-EKGFQPNDFTYGGLIHGYSMAGNLEKAEQL 580

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
             +M +  +      +  +L        L+++    + M EK + PD   Y I+IH    
Sbjct: 581 LHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSS 640

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S  ++ A  V   + K  L P  + +G+LI G C    +++A+ L +++ +   ++P   
Sbjct: 641 SGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAK-KGIEPGIS 699

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G C   ++S A  +   ++   +  +   Y++LI    KAG   +   +  EM
Sbjct: 700 CYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEM 759

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  P++  Y+ L +G     D + A  I +EM  +G  A   S+N ++ G CK GK
Sbjct: 760 LTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARG-YAIISSFNTLVHGFCKRGK 817



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 135/306 (44%), Gaps = 40/306 (13%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I  L  +        +L  ++ +  +VP  +I+ ++I  + +A  +E+A+ + DEM
Sbjct: 631 YGIVIHNLSSSGHMQAAVSVLSVIEKNG-LVPDSLIYGSLISGFCKAADMEKAVGLLDEM 689

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
           +   ++  +  +N L++       +   + +F  I+ K + P+  +Y  LI G   +  +
Sbjct: 690 AKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDI 749

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED-IMRVYNVKPDGQVFA 227
            DA  +++EM+   + P    +  L  G      + +AL + E+ I R Y +      F 
Sbjct: 750 RDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAIISS---FN 806

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS------ALFKAGRKNEFPAIL 281
           +L+ G C  G+L      +E +    + MD  I  SL++       L +AG+ +E   I 
Sbjct: 807 TLVHGFCKRGKL------QETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIF 860

Query: 282 KEMKER--------------------GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
            E++++                    G  P  V +N +I   CK+   + A  + D +  
Sbjct: 861 VELQQKNASHRDTDHLSSLFTDMINQGLVPLDVIHN-MIQSHCKQGYLDKALMLHDALVA 919

Query: 322 KGCKAN 327
           KG +AN
Sbjct: 920 KG-RAN 924


>gi|218200036|gb|EEC82463.1| hypothetical protein OsI_26904 [Oryza sativa Indica Group]
          Length = 346

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 122/244 (50%), Gaps = 8/244 (3%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM----EKYVSPDACS 154
           L  A  + D + S    ++   +NT+L      G  DR   L + M         P+A S
Sbjct: 61  LGEATSLLDALPSVRDAVS---YNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVS 117

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           Y +L+      RR + A  +   M    ++  +VT+GTLI GLC    VD+A++L  ++ 
Sbjct: 118 YTVLMRALCADRRADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC 177

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
               ++P+  V++SL++G C  G       V  EM    IE D  +Y+ LI +L K G+ 
Sbjct: 178 E-SGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKA 236

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            +   ++  M  RG +PN VTYN LI+  CKE   + A  +L +M +KG   + ++YN +
Sbjct: 237 KKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTL 296

Query: 335 LGGL 338
           + GL
Sbjct: 297 IKGL 300



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 1/160 (0%)

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
           +P  V++  L+  LC + R D+A+ L    MR   V+ D   + +LI+GLC   E+  A+
Sbjct: 112 RPNAVSYTVLMRALCADRRADQAVGLLRS-MRSAGVRADVVTYGTLIRGLCDAAEVDKAV 170

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            +  EM    IE +  +YSSL+    K+GR  +   +  EM E+G +P+ V Y  LI   
Sbjct: 171 ELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSL 230

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           CK    + A  ++D M  +G + N ++YNV++  +CK+G 
Sbjct: 231 CKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGS 270



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 115/236 (48%), Gaps = 10/236 (4%)

Query: 36  EAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           E HP    R N + Y +++  L   +  D+   +L  ++    +    + +  +I     
Sbjct: 106 EPHP--ACRPNAVSYTVLMRALCADRRADQAVGLLRSMR-SAGVRADVVTYGTLIRGLCD 162

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACS 154
           A  +++A+++  EM    ++  V  +++LL      G+ + + ++F ++ EK + PD   
Sbjct: 163 AAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVM 222

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           Y  LI       + + A  V D MV+R L+P +VT+  LI  +C E  V EA+ + +  M
Sbjct: 223 YTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKK-M 281

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
               V PD   + +LIKGL  V E+  A+ + EEMVR  I     I SS  SA+ +
Sbjct: 282 SEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGYI-----IQSSQQSAIAQ 332



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 10/162 (6%)

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNV------KPDGQVFASLIKGLCAVGELSL 241
           V++ T++  LC     D A  L    +R  ++      +P+   +  L++ LCA      
Sbjct: 78  VSYNTVLTALCRRGHHDRAGAL----LRAMSLEPHPACRPNAVSYTVLMRALCADRRADQ 133

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           A+G+   M    +  D   Y +LI  L  A   ++   ++ EM E G +PN V Y++L+ 
Sbjct: 134 AVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQ 193

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G+CK   +E    +  EM +KG + + + Y  ++  LCK GK
Sbjct: 194 GYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGK 235


>gi|356571194|ref|XP_003553764.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g04760, chloroplastic-like [Glycine max]
          Length = 531

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 175/381 (45%), Gaps = 61/381 (16%)

Query: 12  PRLQKDPKLALQLFKNPNPNPNDTEAHPL----------KPFRYNLLHYDLIITKLGRAK 61
           PRL   P++       P+P+   TE+ P           K F  +++ Y+++I  L    
Sbjct: 86  PRLHPSPQI-------PHPSAKPTESIPHAYQVLDRMKNKGFSPDIVTYNILIGSLCSRG 138

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
           M     +  +QL  +    P  + +  +I        ++ A+++ DEM   N+Q  V  +
Sbjct: 139 MLHAALEFKNQLLKE-NFNPTVVTYTILIEATLLQGGIDEAIKLLDEMFEINLQPDVFPY 197

Query: 122 NTLLNPKLTC--GKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
           N+++     C  G +DR  E+   I  K  + D  +YNIL+       + E  +++  +M
Sbjct: 198 NSII---XMCREGYVDRAFEVISSISSKGYALDVITYNILLRSLXNQGKWEAGFELMSDM 254

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
           V +  +  +VT+  LI  LC + +V+E + L +D M+   ++PDG  +  LI  LC  G 
Sbjct: 255 VAKGCEANVVTYSVLISSLCRDGKVEEGVGLLKD-MKKKGLEPDGYCYDPLIAVLCKEGR 313

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS----- 293
           + LA+ V + M+ D    D   Y+++++ L K  R +E  +I +++ E GC PN+     
Sbjct: 314 VDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNT 373

Query: 294 -----------------------------VTYNALISGFCKEEDFEAAFTILD--EMGDK 322
                                        + YN+LIS  C++   + A  +L   EM   
Sbjct: 374 VFSALGSSGHKVRALGMILEMLDXVDPDVIAYNSLISCLCRDGMVDEAIELLVDMEMESS 433

Query: 323 GCKANPISYNVILGGLCKDGK 343
            CK + +SYN++L GLC+ G+
Sbjct: 434 ECKPSVVSYNIVLLGLCRVGR 454



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 120/242 (49%), Gaps = 5/242 (2%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
           E   ++  +M +   +  V  ++ L++     GK++    L + M+K  + PD   Y+ L
Sbjct: 245 EAGFELMSDMVAKGCEANVVTYSVLISSLCRDGKVEEGVGLLKDMKKKGLEPDGYCYDPL 304

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I       R++ A +V D M+     P +V + T++  LC + R DEAL + E +  V  
Sbjct: 305 IAVLCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEV-G 363

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
             P+   + ++   L + G    ALG+  EM+ D ++ D   Y+SLIS L + G  +E  
Sbjct: 364 CSPNASSYNTVFSALGSSGHKVRALGMILEML-DXVDPDVIAYNSLISCLCRDGMVDEAI 422

Query: 279 AIL--KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
            +L   EM+   CKP+ V+YN ++ G C+      A  +L  M DKGC  N  +Y  ++ 
Sbjct: 423 ELLVDMEMESSECKPSVVSYNIVLLGLCRVGRVSDATEVLAAMVDKGCLPNETTYTFLIE 482

Query: 337 GL 338
           G+
Sbjct: 483 GI 484



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 107/263 (40%), Gaps = 45/263 (17%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y ++I+ L R    +E   +L  +K    + P    +  +I    +   ++ A+++
Sbjct: 262 NVVTYSVLISSLCRDGKVEEGVGLLKDMKK-KGLEPDGYCYDPLIAVLCKEGRVDLAIEV 320

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----VSPDACSYNILIHG 161
            D M S      +  +NT+L     C K  R  E   I EK      SP+A SYN +   
Sbjct: 321 LDVMISDGCVPDIVNYNTIL--ACLC-KQKRADEALSIFEKLGEVGCSPNASSYNTVFSA 377

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI-MRVYNVK 220
              S     A  +  EM+   + P ++ + +LI  LC +  VDEA++L  D+ M     K
Sbjct: 378 LGSSGHKVRALGMILEMLDX-VDPDVIAYNSLISCLCRDGMVDEAIELLVDMEMESSECK 436

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P    +  ++ GLC VG +S           D  E                        +
Sbjct: 437 PSVVSYNIVLLGLCRVGRVS-----------DATE------------------------V 461

Query: 281 LKEMKERGCKPNSVTYNALISGF 303
           L  M ++GC PN  TY  LI G 
Sbjct: 462 LAAMVDKGCLPNETTYTFLIEGI 484


>gi|21617993|gb|AAM67043.1| unknown [Arabidopsis thaliana]
          Length = 394

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 162/331 (48%), Gaps = 13/331 (3%)

Query: 15  QKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 74
           ++DPK   + FK         +A   + FR N+  Y+  + +L  AK F+ +++IL + +
Sbjct: 48  ERDPKFITEKFK---------KACQAEWFRKNIAVYERTVRRLAAAKKFEWVEEILEE-Q 97

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           +    + KE     +I  YGR  + E A ++FDEM   N + TV  FN LLN  +   K 
Sbjct: 98  NKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMPERNCKRTVLSFNALLNACVNSKKF 157

Query: 135 DRMKELFQIMEKYVS--PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           D ++ +F+ +   +S  PD  SYN LI G        +A  + DE+  + L+P  +TF  
Sbjct: 158 DLVEGIFEELPGKLSIEPDVASYNTLIKGLCGKGSFTEAVALIDEIENKGLKPDHITFNI 217

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           L++    + + +E  ++   ++   NVK D + + + + GL    +    + + +++  +
Sbjct: 218 LLHESYTKGKFEEGEQIWARMVE-KNVKRDIRSYNARLLGLAMENKSEEMVSLFDKLKGN 276

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
           +++ D   ++++I      G+ +E     KE+++ GC+P    +N+L+   CK  D E+A
Sbjct: 277 ELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEKNGCRPLKFVFNSLLPAICKAGDLESA 336

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + +  E+  K    +      ++  L K  K
Sbjct: 337 YELCKEIFAKRLLVDEAVLQEVVDALVKGSK 367



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 124/246 (50%), Gaps = 4/246 (1%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRAR 97
           P +  +  +L ++ ++     +K FD ++ I  +L     I P    +  +I G  G+  
Sbjct: 133 PERNCKRTVLSFNALLNACVNSKKFDLVEGIFEELPGKLSIEPDVASYNTLIKGLCGKGS 192

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYN 156
             E A+ + DE+ +  ++     FN LL+   T GK +  ++++ +++EK V  D  SYN
Sbjct: 193 FTE-AVALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEKNVKRDIRSYN 251

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
             + G  +  + E+   +FD++    L+P + TF  +I G   E ++DEA+   ++I + 
Sbjct: 252 ARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEK- 310

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
              +P   VF SL+  +C  G+L  A  + +E+   ++ +D  +   ++ AL K  +++E
Sbjct: 311 NGCRPLKFVFNSLLPAICKAGDLESAYELCKEIFAKRLLVDEAVLQEVVDALVKGSKQDE 370

Query: 277 FPAILK 282
              I++
Sbjct: 371 AEEIVE 376


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 145/295 (49%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           +++I T   +  M DE   I +++K    + P  + +  +I    +   ++ A+  F++M
Sbjct: 381 FNIIFTAYAKKAMIDEAMHIFNKMKQQG-LSPDVVNYGALIDALCKLGRVDDAVLKFNQM 439

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIHGCVVSRRL 168
            +  V   +  FN+L+    T  K ++ KE  F+++ + + PD   +N ++       ++
Sbjct: 440 MNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQV 499

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
             A ++ D M +   +P ++++ TLI G CL  R+DEA K   D+M    +KPD   + +
Sbjct: 500 MKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAK-SLDVMLSVGLKPDEWTYNT 558

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ G C  G +  A GV  EM+R+ I      YS+++  LF   R +E   +   M   G
Sbjct: 559 LLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSG 618

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + N   YN +++G  K    + AF +   +  K  +    ++N+++G L K G+
Sbjct: 619 KQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGR 673



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 151/337 (44%), Gaps = 41/337 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT-RIVPKEIIFCNVI--GFYGRARLLERA 102
           +++ Y+ ++      K  +E  ++LH +     R  P  ++   ++  GF+   ++ ++A
Sbjct: 164 DVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQV-DKA 222

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG 161
             +F EM    +Q  V  + T+++       +DR + +FQ M +K V PD  +YN LIHG
Sbjct: 223 YNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHG 282

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
            +   + ++  ++ +EM    L+P   T+G+L+  LC   R  EA  L + ++R   +KP
Sbjct: 283 YLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIR-KGIKP 341

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI--------------------- 260
           +  ++  LI G    G LS    +   MV + +  D  I                     
Sbjct: 342 NVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIF 401

Query: 261 --------------YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
                         Y +LI AL K GR ++      +M   G  PN   +N+L+ G C  
Sbjct: 402 NKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTV 461

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + +E A     EM ++G + + + +N IL  LC  G+
Sbjct: 462 DKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQ 498



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 145/305 (47%), Gaps = 5/305 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           +R N +  + ++  L  AK   E   IL +   +    P  + +  ++  +   +  E A
Sbjct: 125 WRVNNIVINQLLKGLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEA 184

Query: 103 LQMFDEMSSFNVQM---TVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNIL 158
           L++   M+    +     V  +  ++N   T G++D+   LF ++M++ + P+  +Y  +
Sbjct: 185 LELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTV 244

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   ++ ++ A  VF +M+ + ++P   T+  LI+G     +  E +++ E+ M  + 
Sbjct: 245 IDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEE-MSAHG 303

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           +KPD   + SL+  LC  G    A  + + M+R  I+ +  IY  LI      G  +E  
Sbjct: 304 LKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMH 363

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +L  M E G  P+   +N + + + K+   + A  I ++M  +G   + ++Y  ++  L
Sbjct: 364 DLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDAL 423

Query: 339 CKDGK 343
           CK G+
Sbjct: 424 CKLGR 428



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 123/276 (44%), Gaps = 18/276 (6%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEM--SSFNVQMTV--KFFNTLLNPKLTCGK 133
           ++ P    +  +IG + R   LE     F  +  S + V   V  +    L + K  C  
Sbjct: 89  KVTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEA 148

Query: 134 LD----RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK---RRLQPT 186
           +D    RM EL        +PD  SYN L+ G    +R E+A ++   M     R   P 
Sbjct: 149 MDILVKRMPELG------CTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPN 202

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
           +V++  +I G   E +VD+A  L  ++M    ++P+   + ++I GLC    +  A GV 
Sbjct: 203 VVSYAIVINGFFTEGQVDKAYNLFLEMMD-RGIQPNVVTYTTVIDGLCKAQVVDRAEGVF 261

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           ++M+   ++ D   Y+ LI      G+  E   +L+EM   G KP+  TY +L++  C  
Sbjct: 262 QQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNN 321

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
                A  + D M  KG K N   Y +++ G    G
Sbjct: 322 GRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKG 357



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 138/307 (44%), Gaps = 51/307 (16%)

Query: 89  VIGFYGRARLL--ERALQMFDEMSSFNVQMTVKFFNTLLNP-KLTCGKLDRMKE------ 139
           VIG   R+  L  + AL++FD + +     +V  FN LL       G+     E      
Sbjct: 18  VIGSRARSGSLGLDDALKLFDGLLTHARPASVIAFNHLLTAVSRVSGRRSSTTESELVVS 77

Query: 140 LFQIMEKY----VSPDACSYNILI----------HG-CVVSRRLEDAWKV---------- 174
           LF  M +     V+PD C+Y+ILI          HG       L+  W+V          
Sbjct: 78  LFNRMIRECTIKVTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLK 137

Query: 175 -----------FDEMVKRRLQ----PTLVTFGTLIYGLCLELRVDEALKLKEDIM--RVY 217
                       D +VKR  +    P +V++ TL+ G C E R +EAL+L   +   +  
Sbjct: 138 GLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGR 197

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           +  P+   +A +I G    G++  A  +  EM+   I+ +   Y+++I  L KA   +  
Sbjct: 198 SCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRA 257

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + ++M ++G KP++ TYN LI G+     ++    +L+EM   G K +  +Y  +L  
Sbjct: 258 EGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNY 317

Query: 338 LCKDGKC 344
           LC +G+C
Sbjct: 318 LCNNGRC 324



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 136/286 (47%), Gaps = 19/286 (6%)

Query: 43  FRYNLLHYDL-IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLER 101
           F +N L Y L  + K  +AK F    ++L+Q      I P  + F  ++        + +
Sbjct: 449 FVFNSLVYGLCTVDKWEKAKEF--YFEMLNQ-----GIRPDVVFFNTILCNLCTKGQVMK 501

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIH 160
           A ++ D M     +  V  + TL+      G++D   +   +M    + PD  +YN L+H
Sbjct: 502 AQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLH 561

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM---RVY 217
           G   + R++DA+ VF EM++  + P +VT+ T+++GL    R  EA +L  +++   + +
Sbjct: 562 GYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQW 621

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N+     ++  ++ GL     +  A  + + +     +++   ++ +I ALFK+GR  + 
Sbjct: 622 NI----WIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDA 677

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKE---EDFEAAFTILDEMG 320
             +   +   G  P+  TY  +     +E   E+F+  F+ +++ G
Sbjct: 678 MHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSG 723


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 130/246 (52%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           L++ L++ DE+    ++     +N ++      G++   ++L + M K+ V PD   Y  
Sbjct: 293 LDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTT 352

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I G      +  A K+FDEM ++++ P +VT+ ++I+G+C   ++ EA ++  + M V 
Sbjct: 353 VISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNE-MLVK 411

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            ++PD   + +LI G C  GE+  A  V  +MV+  +  +   Y++L   L K G  +  
Sbjct: 412 GLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVA 471

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +L EM  +G +PN  TYN +++G CK  + E    +++EM   G   + I+Y  ++  
Sbjct: 472 NELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDA 531

Query: 338 LCKDGK 343
            CK G+
Sbjct: 532 YCKMGE 537



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 153/315 (48%), Gaps = 18/315 (5%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D  +HPL         +DL    L       E Q++ H+L     +V   +  CN+  F 
Sbjct: 166 DWGSHPLV--------FDLYFQVLVENGFVLEAQKLFHKLLRYGVVV--SVDSCNL--FL 213

Query: 94  GRARL----LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYV 148
            R       ++ A+++F+E     V       N +L+     GK+     L  Q+ ++  
Sbjct: 214 SRLSCNFEGIKIAVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGN 273

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
            PD  SY +++ G      L+   K+ DE+  + L+P    +  +I  LC    V EA +
Sbjct: 274 FPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQ 333

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           L    MR + V PD  V+ ++I G C +G +S A  + +EM R KI  D   Y+S+I  +
Sbjct: 334 LLRG-MRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGI 392

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            K+G+  E   +  EM  +G +P+ VTY ALI G+CK  + + AF++ ++M  KG   N 
Sbjct: 393 CKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNV 452

Query: 329 ISYNVILGGLCKDGK 343
           ++Y  +  GLCK+G+
Sbjct: 453 VTYTALADGLCKNGE 467



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 147/284 (51%), Gaps = 16/284 (5%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
           K+FDEM++         +IVP  + + +VI    ++  +  A +MF+EM    ++     
Sbjct: 368 KLFDEMRR--------KKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVT 419

Query: 121 FNTLLNPKLTCGKLDRMKELF----QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFD 176
           +  L++     G+   MKE F    Q+++K ++P+  +Y  L  G   +  ++ A ++  
Sbjct: 420 YTALIDGYCKAGE---MKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLH 476

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
           EM ++ LQP + T+ T++ GLC    +++ +KL E+ M +    PD   + +L+   C +
Sbjct: 477 EMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEE-MDLAGFYPDTITYTTLMDAYCKM 535

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           GE++ A  +   M+  +++     ++ L++    +G   +   +++ M E+G  PN+ T+
Sbjct: 536 GEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTF 595

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           N+L+  +C + +  A   I   M D+G   +  +YN+++ G CK
Sbjct: 596 NSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCK 639



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 143/285 (50%), Gaps = 3/285 (1%)

Query: 59  RAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV 118
           R    D++ +++ +LK    + P E I+ N+I    +   +  A Q+   M  + V    
Sbjct: 289 RIGELDKVLKLVDELK-GKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDN 347

Query: 119 KFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
             + T+++     G +    +LF  M  K + PD  +Y  +IHG   S ++ +A ++F+E
Sbjct: 348 VVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNE 407

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           M+ + L+P  VT+  LI G C    + EA  +   +++   + P+   + +L  GLC  G
Sbjct: 408 MLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQ-KGLTPNVVTYTALADGLCKNG 466

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           E+ +A  +  EM R  ++ +   Y+++++ L K G   +   +++EM   G  P+++TY 
Sbjct: 467 EIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYT 526

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            L+  +CK  +   A  +L  M +K  +   +++NV++ G C  G
Sbjct: 527 TLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSG 571



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 117/245 (47%), Gaps = 2/245 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           ++ A ++  EMS   +Q  V  +NT++N     G +++  +L + M+     PD  +Y  
Sbjct: 468 IDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTT 527

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L+        +  A ++   M+ +RLQPTLVTF  L+ G C+   +++  +L E ++   
Sbjct: 528 LMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLE-K 586

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + P+   F SL+K  C    +     + + M    +  D+  Y+ LI    KA    E 
Sbjct: 587 GIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEA 646

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + KEM E+G    + TY+ALI GF K + F  A  + +EM   G  A    Y++ +  
Sbjct: 647 WFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDV 706

Query: 338 LCKDG 342
             ++G
Sbjct: 707 NYEEG 711



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 125/274 (45%), Gaps = 3/274 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +   L +    D   ++LH++     + P    +  ++    +   +E+ +++
Sbjct: 451 NVVTYTALADGLCKNGEIDVANELLHEMSRKG-LQPNVYTYNTIVNGLCKIGNIEQTVKL 509

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            +EM           + TL++     G++ +  EL +IM  K + P   ++N+L++G  +
Sbjct: 510 MEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCM 569

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S  LED  ++ + M+++ + P   TF +L+   C++  +    ++ +  M    V PD  
Sbjct: 570 SGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKA-MHDRGVMPDSN 628

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  LIKG C    +  A  + +EMV     + A  Y +LI   +K  +  E   + +EM
Sbjct: 629 TYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEM 688

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
           ++ G       Y+  +    +E ++E    + DE
Sbjct: 689 RKHGLVAEKDIYDIFVDVNYEEGNWEITLELCDE 722


>gi|255660884|gb|ACU25611.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 484

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 164/325 (50%), Gaps = 15/325 (4%)

Query: 31  NPNDTEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVP 81
           + + T  H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +  
Sbjct: 20  HSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEW 78

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
            E ++  +I  YG+  +++ +++MF +M    V+ T+K +N L    L  G+    K  F
Sbjct: 79  DEDMWVMMIDSYGKEXIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYF 138

Query: 142 -QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
            +++ + + P   ++N++I G  +S ++E A + F++M  R + P +VT+ T+I G    
Sbjct: 139 NKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRV 198

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            +++EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  
Sbjct: 199 KKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAIT 257

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDE 318
           YS+L+  L  A   +E   ILKEM ++   P  NS+ +  LIS  CK  + +AA  +L  
Sbjct: 258 YSTLLPGLCNAEXMSEARVILKEMMDKYLAPTDNSI-FMRLISSHCKSGNLDAAADVLKA 316

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M           Y  ++   CK G+
Sbjct: 317 MIRLSVPTEAGHYGXLIENFCKXGQ 341



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 128/263 (48%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F++M S  +   V  +NT++N      K++  ++ F  M+ + 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   +++DA ++ +EM    ++P  +T+ TL+ GLC    + EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEXMSEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + +++M  Y    D  +F  LI   C  G L  A  V + M+R  +  +AG Y  LI  
Sbjct: 276 VILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             K G+ ++   +L ++ E+    +P S        YN +I   C       A T++ ++
Sbjct: 336 FCKXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQAXKAETLVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +P + N ++ G  ++G
Sbjct: 396 XKLGVQ-DPTALNTLIRGHSQEG 417



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 123/285 (43%), Gaps = 45/285 (15%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + +  +I  Y R + +E A + F EM   N++ TV  + TL+   ++  ++D   
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT-FGTLIYG 196
            L + M+ + + P+A +Y+ L+ G   +  + +A  +  EM+ + L PT  + F  LI  
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEXMSEARVILKEMMDKYLAPTDNSIFMRLISS 300

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI-- 254
            C    +D A  + + ++R+ +V  +   +  LI+  C  G+   A+ + ++++   I  
Sbjct: 301 HCKSGNLDAAADVLKAMIRL-SVPTEAGHYGXLIENFCKXGQYDKAVKLLDKLIEKDIIL 359

Query: 255 ------EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK-----------------P 291
                  ++   Y+ +I  L   G+  +   +++++ + G +                 P
Sbjct: 360 RPQSTLHLEPSAYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSP 419

Query: 292 NSV-----------------TYNALISGFCKEEDFEAAFTILDEM 319
           +S                   YN+L+  + K+ +   A   LD M
Sbjct: 420 DSAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSM 464



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 131/316 (41%), Gaps = 53/316 (16%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D ++  + P   +++ Y+ +I    R K  +E ++   ++K    I P  + +  +I  Y
Sbjct: 175 DMKSREISP---DVVTYNTMINGYYRVKKMEEAEKYFVEMK-GRNIEPTVVTYTTLIKGY 230

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE----LFQIMEKYVS 149
                ++ AL++ +EM  F ++     ++TLL P L C   + M E    L ++M+KY++
Sbjct: 231 VSVDQVDDALRLVEEMKGFGIKPNAITYSTLL-PGL-CNA-EXMSEARVILKEMMDKYLA 287

Query: 150 P-DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
           P D   +  LI     S  L+ A  V   M++  +      +G LI   C   + D+A+K
Sbjct: 288 PTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFCKXGQYDKAVK 347

Query: 209 L------KEDIMR---VYNVKP--------------------------------DGQVFA 227
           L      K+ I+R     +++P                                D     
Sbjct: 348 LLDKLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALN 407

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +LI+G    G    A  + + M+R K++ +   Y+SL+ +  K     +  A L  M E 
Sbjct: 408 TLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIEN 467

Query: 288 GCKPNSVTYNALISGF 303
              P+S  + +++   
Sbjct: 468 DHLPDSALFRSVMESL 483


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 141/301 (46%), Gaps = 3/301 (0%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           FR N++ Y  +I  L + +  +   +I +Q+  D  I P  + + +++           A
Sbjct: 183 FRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMG-DNGIRPNVVTYNSLVSGLCEIGRWSDA 241

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG 161
             +  +M    +Q  V  F  L++  +  GK+   KEL+++M +  V PD  +Y  LI+G
Sbjct: 242 AWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALING 301

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                RL++A ++F  M      P  VT+ TLI+G C   RV++  K+  + M    +  
Sbjct: 302 LCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYE-MSQKGLVA 360

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   +  LI+G C VG   +A  V  +M   +   D   Y+ L+  L   G   +   I 
Sbjct: 361 NTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIF 420

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           K M++R    N VTY  +I G CK    E AF +   +  KG K N I+Y  ++ G C+ 
Sbjct: 421 KYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRR 480

Query: 342 G 342
           G
Sbjct: 481 G 481



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 147/300 (49%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           +++ +  +++ + + K FD +  +  Q++     +   +  CN++     R+    RA  
Sbjct: 81  SIVDFTRLLSVIAKMKRFDVVISLFEQMQ--ILGISPVLYTCNIVMNCVCRSSQPCRASC 138

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCV 163
              +M     +  +  F +LL+      +++    LF QI+     P+  +Y  LIH   
Sbjct: 139 FLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLC 198

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
            +R L  A ++F++M    ++P +VT+ +L+ GLC   R  +A  L  D+M+   ++P+ 
Sbjct: 199 KNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMK-RGIQPNV 257

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             F +LI     VG++  A  + + M++  +  D   Y++LI+ L   GR +E   +   
Sbjct: 258 ITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYL 317

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M+  G  PN VTY  LI GFCK +  E    I  EM  KG  AN I+Y V++ G C  G+
Sbjct: 318 MESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGR 377



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 138/281 (49%), Gaps = 3/281 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R N++ Y+ +++ L     + +   +L  +     I P  I F  +I  + +   +  A 
Sbjct: 219 RPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRG-IQPNVITFTALIDAFVKVGKIMEAK 277

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
           +++  M   +V   V  +  L+N   T G+LD  +++F +ME     P+  +Y  LIHG 
Sbjct: 278 ELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGF 337

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             S+R+ED  K+F EM ++ L    +T+  LI G CL  R D A ++    M      PD
Sbjct: 338 CKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQ-MGSRRAPPD 396

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
            + +  L+ GLC  G +  AL + + M + +++++   Y+ +I  + K G+  +   +  
Sbjct: 397 IRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFC 456

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
            +  +G KPN +TY  +ISGFC+      A  +  +M + G
Sbjct: 457 SLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDG 497



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 123/264 (46%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  +I    + R L  A+++F++M    ++  V  +N+L++     G+      L
Sbjct: 185 PNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWL 244

Query: 141 FQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
            + +M++ + P+  ++  LI   V   ++ +A +++  M++  + P + T+  LI GLC 
Sbjct: 245 LRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCT 304

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R+DEA ++   +M      P+   + +LI G C    +     +  EM +  +  +  
Sbjct: 305 YGRLDEARQMFY-LMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTI 363

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+ LI      GR +    +  +M  R   P+  TYN L+ G C     E A  I   M
Sbjct: 364 TYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYM 423

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             +    N ++Y +I+ G+CK GK
Sbjct: 424 RKREMDINIVTYTIIIQGMCKVGK 447


>gi|297834130|ref|XP_002884947.1| hypothetical protein ARALYDRAFT_897532 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330787|gb|EFH61206.1| hypothetical protein ARALYDRAFT_897532 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 528

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 6/297 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQIL-HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDE 108
           Y   I +L  AK F  + ++L +Q K D   +  E     ++  YG + + E A ++FDE
Sbjct: 93  YSAFIRRLREAKKFSTIHEVLQYQKKFDD--IKSEDFVIRIMLLYGYSGMAEHAHKLFDE 150

Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKY-VSPDACSYNILIHGCVVSR 166
           M   N + TVK FN LL+  +   KLD  K+ F ++ EK  ++PD  +YN +I     + 
Sbjct: 151 MPELNCERTVKSFNALLSAYVNSRKLDEAKKAFKELPEKLGITPDLVTYNTMIKALCRTG 210

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
            ++D   +F+E+ K   +P L++F TL+          E  ++  D+M+  N+ P+ + +
Sbjct: 211 SMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRI-WDLMKSKNLAPNIRSY 269

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
            S ++GL    + + A+ +   M  + I  D   Y++ I+A        E      EMKE
Sbjct: 270 NSRVRGLTRNKKFTDAIDLINVMKTEGISPDVHTYNAFITAYRGDNNLEEVMKWYNEMKE 329

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +G  P++VTY  LI   CK+ D + A  I +E       + P  Y  ++  L   GK
Sbjct: 330 KGLTPDTVTYCLLIPLLCKKGDLDRAVEISEEAIKHKLLSRPNMYKPVVERLMGAGK 386


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 148/301 (49%), Gaps = 14/301 (4%)

Query: 45  YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           YN + Y L   +LGR    D  + +   +  D  ++P  + +  +I  Y R      AL 
Sbjct: 315 YNTIMYSL--CRLGRVS--DARRYLDVMVNED--LMPDLVSYNTLIYGYSRLGNFAEALL 368

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV 163
           +F E+ S N+  +V  +NTL++     G LD  K +   M K+ + PD  ++ IL+ G  
Sbjct: 369 LFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFC 428

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV---DEALKLKEDIMRVYNVK 220
               L  A ++FDEM+ R L+P  + + T I G   EL++    +A  +KE+ M+     
Sbjct: 429 QMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVG---ELKLGNPSKAFGMKEE-MKAEGFP 484

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   +  LI GLC +G    A  + ++M  + I  D   Y+S+I A   +G   +   +
Sbjct: 485 PDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEV 544

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             +M ++G  P+ VTY  LI  +      + A    DEM DKG   N I+YN ++ GLCK
Sbjct: 545 FSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCK 604

Query: 341 D 341
           +
Sbjct: 605 E 605



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 143/316 (45%), Gaps = 36/316 (11%)

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
           M +E++++ + +    +I P  + F  ++    +   + RA+++ D M  F        +
Sbjct: 187 MVNEVEEV-YSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSY 245

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           N L+N     G+ DR KEL + M    +   A +YN LI G       E+A  +  EM+ 
Sbjct: 246 NVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLG 305

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALK-----LKEDIM--------------------- 214
           R   PT+VT+ T++Y LC   RV +A +     + ED+M                     
Sbjct: 306 RGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAE 365

Query: 215 --------RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266
                   R  N+ P    + +LI G C  G L +A G+K++M++  +  D   ++ L+ 
Sbjct: 366 ALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVR 425

Query: 267 ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326
              + G       +  EM  RG KP+ + Y   I G  K  +   AF + +EM  +G   
Sbjct: 426 GFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPP 485

Query: 327 NPISYNVILGGLCKDG 342
           + I+YNV++ GLCK G
Sbjct: 486 DLITYNVLINGLCKLG 501



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 37/244 (15%)

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
           +A  M +EM +      +  +N L+N     G  D   EL Q M  + + PD  +Y  +I
Sbjct: 470 KAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSII 529

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           H  ++S  L  A +VF +M+K+ + P++VT+  LI+   +  R+D A K  ++ M+   V
Sbjct: 530 HAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDE-MQDKGV 588

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   + +LI GLC           KE M      MD                      
Sbjct: 589 SPNVITYNALIYGLC-----------KENM------MDVAY------------------N 613

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +  EM+ +G  PN  TY  LI+     + ++ A  +  +M D+  K +  +++ ++  L 
Sbjct: 614 LFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIKPDSCTHSALMKHLS 673

Query: 340 KDGK 343
           KD K
Sbjct: 674 KDYK 677



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 108/208 (51%), Gaps = 3/208 (1%)

Query: 27  NPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF 86
           NP+      E    + F  +L+ Y+++I  L +   FD+  +++ +++ +  IVP  + +
Sbjct: 467 NPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEG-IVPDHVTY 525

Query: 87  CNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIME 145
            ++I  +  + LL +A ++F +M    +  +V  +  L++     G+LD  K+ F ++ +
Sbjct: 526 TSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQD 585

Query: 146 KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
           K VSP+  +YN LI+G      ++ A+ +F EM  + + P   T+  LI          +
Sbjct: 586 KGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQD 645

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGL 233
           ALKL +D++    +KPD    ++L+K L
Sbjct: 646 ALKLYKDMLD-REIKPDSCTHSALMKHL 672


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 133/280 (47%), Gaps = 41/280 (14%)

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP----DACSYN 156
           +AL+++ +  +    +  +  N LL+     GKLD   E F+I ++ +      D  SYN
Sbjct: 488 KALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLD---EAFRIQKEILGRGCVMDRVSYN 544

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR- 215
            LI GC   ++L++A+   DEMVKR L+P   T+  LI GL    +V+EA++  +D  R 
Sbjct: 545 TLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRN 604

Query: 216 -----VY----------------------------NVKPDGQVFASLIKGLCAVGELSLA 242
                VY                            NV+P+  V+  LI+  C  G LS+A
Sbjct: 605 GMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMA 664

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
           L ++E+M    I  ++  Y+SLI  +    R  E   + +EM+  G +PN   Y ALI G
Sbjct: 665 LELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDG 724

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + K         +L EM  K    N I+Y V++GG  +DG
Sbjct: 725 YGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDG 764



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 128/250 (51%), Gaps = 12/250 (4%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG--KLDRMKELFQIME----KYVSPDA 152
           L+ A    DEM    ++     ++ L+     CG   +++++E  Q  +      + PD 
Sbjct: 556 LDEAFMFLDEMVKRGLKPDNYTYSILI-----CGLFNMNKVEEAIQFWDDCKRNGMLPDV 610

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +Y+++I GC  + R E+  + FDEM+ + +QP  V +  LI   C   R+  AL+L+ED
Sbjct: 611 YTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELRED 670

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M+   + P+   + SLIKG+  +  +  A  + EEM  + +E +   Y++LI    K G
Sbjct: 671 -MKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLG 729

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           +  +   +L+EM  +   PN +TY  +I G+ ++ +   A  +L+EM +KG   + I+Y 
Sbjct: 730 QMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYK 789

Query: 333 VILGGLCKDG 342
             + G  K G
Sbjct: 790 EFIYGYLKQG 799



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 151/294 (51%), Gaps = 3/294 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ ++ +I  LG    +DE      ++  +  + P  I +  ++    RA+ +  A  +
Sbjct: 294 NVVTFNTVIDGLGMCGRYDEAFMFKEKMV-ERGMEPTLITYSILVKGLTRAKRIGDAYFV 352

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
             EM+       V  +N L++  +  G L++  E+  +M  K +S  + +YN LI G   
Sbjct: 353 LKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCK 412

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + + ++A ++  EM+         +F ++I  LC  L  D AL+   +++ + N+ P G 
Sbjct: 413 NGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEML-LRNMSPGGG 471

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           +  +LI GLC  G+ S AL +  + +     +D    ++L+  L +AG+ +E   I KE+
Sbjct: 472 LLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEI 531

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             RGC  + V+YN LISG C ++  + AF  LDEM  +G K +  +Y++++ GL
Sbjct: 532 LGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGL 585



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 107/218 (49%), Gaps = 1/218 (0%)

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
           N LL   +   +  +  E F ++ K VSPD   +   I+      ++E+A K+F +M + 
Sbjct: 230 NILLTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEA 289

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
            + P +VTF T+I GL +  R DEA   KE ++    ++P    ++ L+KGL     +  
Sbjct: 290 GVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVE-RGMEPTLITYSILVKGLTRAKRIGD 348

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           A  V +EM +     +  +Y++LI +  +AG  N+   I   M  +G    S TYN LI 
Sbjct: 349 AYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIK 408

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           G+CK    + A  +L EM   G   N  S+  ++  LC
Sbjct: 409 GYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLC 446



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 147/336 (43%), Gaps = 42/336 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            L+ Y +++  L RAK   +   +L ++       P  I++ N+I  +  A  L +A+++
Sbjct: 329 TLITYSILVKGLTRAKRIGDAYFVLKEMTKKG-FPPNVIVYNNLIDSFIEAGSLNKAIEI 387

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            D M S  + +T   +NTL+      G+ D  + L  +++    + +  S+  +I  C++
Sbjct: 388 KDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVI--CLL 445

Query: 165 SRRL--EDAWKVFDEMVKRRLQP------TLV---------------------------- 188
              L  + A +   EM+ R + P      TL+                            
Sbjct: 446 CSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDT 505

Query: 189 -TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
            T   L++GLC   ++DEA +++++I+    V  D   + +LI G C   +L  A    +
Sbjct: 506 RTSNALLHGLCEAGKLDEAFRIQKEILGRGCVM-DRVSYNTLISGCCGKKKLDEAFMFLD 564

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           EMV+  ++ D   YS LI  LF   +  E      + K  G  P+  TY+ +I G CK E
Sbjct: 565 EMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAE 624

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             E      DEM  K  + N + YN ++   C+ G+
Sbjct: 625 RTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGR 660



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 92/194 (47%), Gaps = 2/194 (1%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P   + NIL+   V +   +   + FD +V + + P +  F T I   C   +V+EA+KL
Sbjct: 224 PSKTTCNILLTSLVRANEFQKCCEAFD-VVCKGVSPDVYLFTTAINAFCKGGKVEEAVKL 282

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
               M    V P+   F ++I GL   G    A   KE+MV   +E     YS L+  L 
Sbjct: 283 FSK-MEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLT 341

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           +A R  +   +LKEM ++G  PN + YN LI  F +      A  I D M  KG      
Sbjct: 342 RAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSS 401

Query: 330 SYNVILGGLCKDGK 343
           +YN ++ G CK+G+
Sbjct: 402 TYNTLIKGYCKNGQ 415


>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
 gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
          Length = 347

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 122/242 (50%), Gaps = 2/242 (0%)

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHG 161
           +++ DEM        +  +N +LN     G++D   E  + +  Y   P+  SYNI++ G
Sbjct: 1   MKLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKG 60

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              + R EDA K+ +EM  +   P +VTF  LI  LC    V+ A+++ E I + Y   P
Sbjct: 61  LFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPK-YGCTP 119

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   +  L+   C   ++  A+   E MV      D   Y++L++AL + G  +    +L
Sbjct: 120 NSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLL 179

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            ++K +GC P  ++YN +I G  K    + A  +LDEM  KG + + I+Y  I  GLC++
Sbjct: 180 HQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCRE 239

Query: 342 GK 343
            K
Sbjct: 240 DK 241



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 140/298 (46%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y++++  + +    D+  + L  L       P  + +  V+     A   E A ++
Sbjct: 15  DIITYNVVLNGICQEGRVDDAMEFLENLPSYGG-EPNTVSYNIVLKGLFTAERWEDAEKL 73

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            +EM+       V  FN L++     G ++   E+ + + KY  +P++ SYN L+H    
Sbjct: 74  MEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCK 133

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            ++++ A    + MV R   P +V++ TL+  LC    VD A+ L    ++     P   
Sbjct: 134 QKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQ-LKGKGCSPVLI 192

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + ++I GL   G+   AL + +EM+   ++ D   Y+++ S L +  +  E      ++
Sbjct: 193 SYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFCKV 252

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++ G +P  V YNA++ G CK  +   A  +   M   GC  N  +Y +++ GL  +G
Sbjct: 253 QDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTYTILVEGLAYEG 310



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 132/279 (47%), Gaps = 3/279 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N + Y++++  L  A+ +++ ++++ ++ H     P  + F  +I F  R  L+E A+++
Sbjct: 50  NTVSYNIVLKGLFTAERWEDAEKLMEEMAHKG-CPPNVVTFNMLISFLCRRGLVEPAMEV 108

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            +++  +        +N LL+      K+D+     ++M  +   PD  SYN L+     
Sbjct: 109 LEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCR 168

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  ++ A  +  ++  +   P L+++ T+I GL    +  EAL+L ++++    ++PD  
Sbjct: 169 NGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMIS-KGLQPDII 227

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + ++  GLC   ++  A+    ++    I     +Y++++  L K    +    +   M
Sbjct: 228 TYTTIASGLCREDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYM 287

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
              GC PN  TY  L+ G   E   + A  +L ++  +G
Sbjct: 288 ISNGCMPNESTYTILVEGLAYEGLVKEARDLLGQLCSRG 326


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 133/280 (47%), Gaps = 41/280 (14%)

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP----DACSYN 156
           +AL+++ +  +    +  +  N LL+     GKLD   E F+I ++ +      D  SYN
Sbjct: 501 KALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLD---EAFRIQKEILGRGCVMDRVSYN 557

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR- 215
            LI GC   ++L++A+   DEMVKR L+P   T+  LI GL    +V+EA++  +D  R 
Sbjct: 558 TLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRN 617

Query: 216 -----VY----------------------------NVKPDGQVFASLIKGLCAVGELSLA 242
                VY                            NV+P+  V+  LI+  C  G LS+A
Sbjct: 618 GMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMA 677

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
           L ++E+M    I  ++  Y+SLI  +    R  E   + +EM+  G +PN   Y ALI G
Sbjct: 678 LELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDG 737

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + K         +L EM  K    N I+Y V++GG  +DG
Sbjct: 738 YGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDG 777



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 128/250 (51%), Gaps = 12/250 (4%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG--KLDRMKELFQIME----KYVSPDA 152
           L+ A    DEM    ++     ++ L+     CG   +++++E  Q  +      + PD 
Sbjct: 569 LDEAFMFLDEMVKRGLKPDNYTYSILI-----CGLFNMNKVEEAIQFWDDCKRNGMLPDV 623

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +Y+++I GC  + R E+  + FDEM+ + +QP  V +  LI   C   R+  AL+L+ED
Sbjct: 624 YTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELRED 683

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M+   + P+   + SLIKG+  +  +  A  + EEM  + +E +   Y++LI    K G
Sbjct: 684 -MKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLG 742

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           +  +   +L+EM  +   PN +TY  +I G+ ++ +   A  +L+EM +KG   + I+Y 
Sbjct: 743 QMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYK 802

Query: 333 VILGGLCKDG 342
             + G  K G
Sbjct: 803 EFIYGYLKQG 812



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 151/294 (51%), Gaps = 3/294 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ ++ +I  LG    +DE      ++  +  + P  I +  ++    RA+ +  A  +
Sbjct: 307 NVVTFNTVIDGLGMCGRYDEAFMFKEKMV-ERGMEPTLITYSILVKGLTRAKRIGDAYFV 365

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
             EM+       V  +N L++  +  G L++  E+  +M  K +S  + +YN LI G   
Sbjct: 366 LKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCK 425

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + + ++A ++  EM+         +F ++I  LC  L  D AL+   +++ + N+ P G 
Sbjct: 426 NGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEML-LRNMSPGGG 484

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           +  +LI GLC  G+ S AL +  + +     +D    ++L+  L +AG+ +E   I KE+
Sbjct: 485 LLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEI 544

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             RGC  + V+YN LISG C ++  + AF  LDEM  +G K +  +Y++++ GL
Sbjct: 545 LGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGL 598



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 107/218 (49%), Gaps = 1/218 (0%)

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
           N LL   +   +  +  E F ++ K VSPD   +   I+      ++E+A K+F +M + 
Sbjct: 243 NILLTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEA 302

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
            + P +VTF T+I GL +  R DEA   KE ++    ++P    ++ L+KGL     +  
Sbjct: 303 GVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVE-RGMEPTLITYSILVKGLTRAKRIGD 361

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           A  V +EM +     +  +Y++LI +  +AG  N+   I   M  +G    S TYN LI 
Sbjct: 362 AYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIK 421

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           G+CK    + A  +L EM   G   N  S+  ++  LC
Sbjct: 422 GYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLC 459



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 147/336 (43%), Gaps = 42/336 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            L+ Y +++  L RAK   +   +L ++       P  I++ N+I  +  A  L +A+++
Sbjct: 342 TLITYSILVKGLTRAKRIGDAYFVLKEMTKKG-FPPNVIVYNNLIDSFIEAGSLNKAIEI 400

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            D M S  + +T   +NTL+      G+ D  + L  +++    + +  S+  +I  C++
Sbjct: 401 KDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVI--CLL 458

Query: 165 SRRL--EDAWKVFDEMVKRRLQP------TLV---------------------------- 188
              L  + A +   EM+ R + P      TL+                            
Sbjct: 459 CSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDT 518

Query: 189 -TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
            T   L++GLC   ++DEA +++++I+    V  D   + +LI G C   +L  A    +
Sbjct: 519 RTSNALLHGLCEAGKLDEAFRIQKEILGRGCVM-DRVSYNTLISGCCGKKKLDEAFMFLD 577

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           EMV+  ++ D   YS LI  LF   +  E      + K  G  P+  TY+ +I G CK E
Sbjct: 578 EMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAE 637

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             E      DEM  K  + N + YN ++   C+ G+
Sbjct: 638 RTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGR 673



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 92/194 (47%), Gaps = 2/194 (1%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P   + NIL+   V +   +   + FD +V + + P +  F T I   C   +V+EA+KL
Sbjct: 237 PSKTTCNILLTSLVRANEFQKCCEAFD-VVCKGVSPDVYLFTTAINAFCKGGKVEEAVKL 295

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
               M    V P+   F ++I GL   G    A   KE+MV   +E     YS L+  L 
Sbjct: 296 FSK-MEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLT 354

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           +A R  +   +LKEM ++G  PN + YN LI  F +      A  I D M  KG      
Sbjct: 355 RAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSS 414

Query: 330 SYNVILGGLCKDGK 343
           +YN ++ G CK+G+
Sbjct: 415 TYNTLIKGYCKNGQ 428


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 124/251 (49%), Gaps = 3/251 (1%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY--VSPDA 152
           R   ++RA ++F +M SF     V  +NTL+N      ++ R  ELF+ ++     SPD 
Sbjct: 190 RVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDI 249

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +Y  +I G   S ++++A  +F+EM++  +QP ++TF  LI G      + EA  +   
Sbjct: 250 VTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRK 309

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M  ++   D   F SLI G C  G+++  L     M    +      Y+ LI+AL K  
Sbjct: 310 -MAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKEN 368

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           R NE    L ++K     P    YN +I GFCK  + +    IL EM +K C  + +++ 
Sbjct: 369 RLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFT 428

Query: 333 VILGGLCKDGK 343
           +++ G C  G+
Sbjct: 429 ILIIGHCVKGR 439



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 151/340 (44%), Gaps = 12/340 (3%)

Query: 12  PRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLH----YDLIITKLGRAKMFDEMQ 67
           P  Q  P +A ++ K  N      +         N+ H    Y+L++  L +    D + 
Sbjct: 34  PDRQLTPLIAFEVIKRFNNPKVGFKFLEFSRLNLNVNHCYSTYNLLMRSLCQMGHHDLVN 93

Query: 68  QILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127
            +   +  D  + P   +   ++ +  +A   +   ++  E+    V++    +N LL+ 
Sbjct: 94  IVFDYMGSDGHL-PDSKLLGFLVTWMAQASDFDMVKKLLAEVQGKEVRINSFVYNNLLSV 152

Query: 128 KLTCGKLDRMKELFQIMEKYV----SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
            +   K +++ E   + ++Y+     PD  ++NILI G      ++ A++VF +M     
Sbjct: 153 LV---KQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGC 209

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P +VT+ TLI GLC    V    +L ++I    +  PD   + S+I G C  G++  A 
Sbjct: 210 LPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEAS 269

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            + EEM+R  I+ +   ++ LI    K G   E  A+ ++M    C  + VT+ +LI G+
Sbjct: 270 NLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGY 329

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           C+           + M  +       +Y V++  LCK+ +
Sbjct: 330 CRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENR 369



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 5/233 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  II+   ++    E   +  ++   + I P  I F  +I  +G+   +  A  M
Sbjct: 248 DIVTYTSIISGFCKSGKMKEASNLFEEMMR-SGIQPNVITFNVLIDGFGKIGNIAEAEAM 306

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           + +M+ F+    V  F +L++     G+++   + + +M+ + VSP   +Y +LI+    
Sbjct: 307 YRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCK 366

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA-LKLKEDIMRVYNVKPDG 223
             RL +A     ++    + P    +  +I G C    VDE  + LKE  M      PD 
Sbjct: 367 ENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKE--MEEKRCDPDK 424

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             F  LI G C  G +  A+ +   M+  +   D    +SLIS L KAG  NE
Sbjct: 425 VTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLISCLLKAGMPNE 477



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/202 (19%), Positives = 81/202 (40%), Gaps = 37/202 (18%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ ++++I   G+     E + +  ++ +        + F ++I  Y RA  +   L+ 
Sbjct: 283 NVITFNVLIDGFGKIGNIAEAEAMYRKMAY-FDCSADVVTFTSLIDGYCRAGQVNHGLKF 341

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF------------------------ 141
           ++ M + NV  TV  +  L+N      +L+  ++                          
Sbjct: 342 WNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCK 401

Query: 142 ------------QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
                       ++ EK   PD  ++ ILI G  V  R+ +A  +F+ M+  R  P  +T
Sbjct: 402 AGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNIT 461

Query: 190 FGTLIYGLCLELRVDEALKLKE 211
             +LI  L      +EA ++++
Sbjct: 462 VNSLISCLLKAGMPNEAYRIRK 483


>gi|255660928|gb|ACU25633.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 481

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 171/361 (47%), Gaps = 56/361 (15%)

Query: 38  HPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN 88
           H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +   E ++  
Sbjct: 27  HALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVL 85

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVK--------------------FFNTLLNPK 128
           +I  YG+  +++ ++++F +M    V+ T+K                    +FN ++N  
Sbjct: 86  MIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKVISRRGRYMMSKRYFNKMVNEG 145

Query: 129 LT---------------CGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAW 172
           +                 GK++     F+ +  + ++PD  +YN +I+G    +++E+A 
Sbjct: 146 IEPTRHTFNVLIWGFFLSGKVETANRFFEDLKSREITPDVVTYNTMINGYTRVKKMEEAE 205

Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
           K F EM ++++ PT+VT+ TLI G     RVD+AL+L E+ M+   +KP+   +++L+ G
Sbjct: 206 KYFLEMKEKKIDPTVVTYTTLIKGYASIDRVDDALRLVEE-MKGLGIKPNAITYSTLLPG 264

Query: 233 LCAVGELSLALGVKEEMVRDKIE-MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           LC   ++S A  + +EMV   I   D  I+  LIS+  KAG  +    +LK M       
Sbjct: 265 LCDAEKMSEARSLLKEMVDKYIAPKDNSIFIRLISSQCKAGNLDAAADVLKAMIRLSIPT 324

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGC--------KANPISYNVILGGLCKDGK 343
            +  Y  LI  +CK   ++ A  + D++ +K             P +YN ++  LC +G+
Sbjct: 325 EAGHYGVLIENYCKAGKYDQAVKLFDKLIEKDIILRPQSTLHMEPSAYNPLIEYLCNNGQ 384

Query: 344 C 344
            
Sbjct: 385 T 385



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 129/263 (49%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKY 147
           + GF+   ++ E A + F+++ S  +   V  +NT++N      K++  ++ F ++ EK 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDLKSREITPDVVTYNTMINGYTRVKKMEEAEKYFLEMKEKK 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G     R++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IDPTVVTYTTLIKGYASIDRVDDALRLVEEMKGLGIKPNAITYSTLLPGLCDAEKMSEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            L ++++  Y    D  +F  LI   C  G L  A  V + M+R  I  +AG Y  LI  
Sbjct: 276 SLLKEMVDKYIAPKDNSIFIRLISSQCKAGNLDAAADVLKAMIRLSIPTEAGHYGVLIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             KAG+ ++   +  ++ E+    +P S        YN LI   C       A T++ ++
Sbjct: 336 YCKAGKYDQAVKLFDKLIEKDIILRPQSTLHMEPSAYNPLIEYLCNNGQTGKAETLVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + + IS N ++ G  ++G
Sbjct: 396 MKLGVQ-DSISLNTLIRGHSQEG 417



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 127/300 (42%), Gaps = 48/300 (16%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I    R K  +E ++   ++K + +I P  + +  +I  Y     ++ AL++
Sbjct: 184 DVVTYNTMINGYTRVKKMEEAEKYFLEMK-EKKIDPTVVTYTTLIKGYASIDRVDDALRL 242

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSP-------------- 150
            +EM    ++     ++TLL       K+   + L  ++++KY++P              
Sbjct: 243 VEEMKGLGIKPNAITYSTLLPGLCDAEKMSEARSLLKEMVDKYIAPKDNSIFIRLISSQC 302

Query: 151 ----------------------DACSYNILIHGCVVSRRLEDAWKVFDEMVKR----RLQ 184
                                 +A  Y +LI     + + + A K+FD+++++    R Q
Sbjct: 303 KAGNLDAAADVLKAMIRLSIPTEAGHYGVLIENYCKAGKYDQAVKLFDKLIEKDIILRPQ 362

Query: 185 PTL----VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
            TL      +  LI  LC   +  +A  L   +M++  V+ D     +LI+G    G   
Sbjct: 363 STLHMEPSAYNPLIEYLCNNGQTGKAETLVRQLMKL-GVQ-DSISLNTLIRGHSQEGSPD 420

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  + + M+R K++ +   Y SL+ +  K     +  A L  M E    P+S  + +++
Sbjct: 421 SAFEILKIMLRRKVDSEKSAYDSLVQSYLKRNEPADAKAALDXMIENDHLPDSSLFRSVM 480


>gi|255660882|gb|ACU25610.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 484

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 165/325 (50%), Gaps = 15/325 (4%)

Query: 31  NPNDTEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVP 81
           + + T  H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +  
Sbjct: 20  HSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEW 78

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
            E ++  +I  YG+  +++ +++MF +M    V+ T+K +N L    L  G+    K  F
Sbjct: 79  DEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYF 138

Query: 142 -QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
            +++ + + P   ++N++I G  +S ++E A + F++M  R + P +VT+ T+I G    
Sbjct: 139 NKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRV 198

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            +++EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  
Sbjct: 199 KKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAIT 257

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDE 318
           YS+L+  L  A + +E   ILKEM ++   P  NS+ +  LIS  CK  + +AA  +L  
Sbjct: 258 YSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSI-FMRLISSHCKSGNLDAAADVLKA 316

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M           Y  ++   CK G+
Sbjct: 317 MIRLSVPTEAGHYGXLIENFCKVGQ 341



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 129/263 (49%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F++M S  +   V  +NT++N      K++  ++ F  M+ + 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   +++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + +++M  Y    D  +F  LI   C  G L  A  V + M+R  +  +AG Y  LI  
Sbjct: 276 VILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             K G+ ++   +L ++ E+    +P S        YN +I   C       A T++ ++
Sbjct: 336 FCKVGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQAXKAETLVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +P + N ++ G  ++G
Sbjct: 396 XKLGVQ-DPTALNTLIRGHSQEG 417



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/285 (20%), Positives = 125/285 (43%), Gaps = 45/285 (15%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + +  +I  Y R + +E A + F EM   N++ TV  + TL+   ++  ++D   
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT-FGTLIYG 196
            L + M+ + + P+A +Y+ L+ G   + ++ +A  +  EM+ + L PT  + F  LI  
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI-- 254
            C    +D A  + + ++R+ +V  +   +  LI+  C VG+   A+ + ++++   I  
Sbjct: 301 HCKSGNLDAAADVLKAMIRL-SVPTEAGHYGXLIENFCKVGQYDKAVKLLDKLIEKDIIL 359

Query: 255 ------EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK-----------------P 291
                  ++   Y+ +I  L   G+  +   +++++ + G +                 P
Sbjct: 360 RPQSTLHLEPSAYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSP 419

Query: 292 NSV-----------------TYNALISGFCKEEDFEAAFTILDEM 319
           +S                   YN+L+  + K+ +   A   LD M
Sbjct: 420 DSAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSM 464



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/310 (20%), Positives = 128/310 (41%), Gaps = 47/310 (15%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D ++  + P   +++ Y+ +I    R K  +E ++   ++K    I P  + +  +I  Y
Sbjct: 175 DMKSREISP---DVVTYNTMINGYYRVKKMEEAEKYFVEMK-GRNIEPTVVTYTTLIKGY 230

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSP-D 151
                ++ AL++ +EM  F ++     ++TLL       K+   + +  ++M+KY++P D
Sbjct: 231 VSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-- 209
              +  LI     S  L+ A  V   M++  +      +G LI   C   + D+A+KL  
Sbjct: 291 NSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFCKVGQYDKAVKLLD 350

Query: 210 ----KEDIMR---VYNVKP--------------------------------DGQVFASLI 230
               K+ I+R     +++P                                D     +LI
Sbjct: 351 KLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLI 410

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
           +G    G    A  + + M+R K++ +   Y+SL+ +  K     +  A L  M E    
Sbjct: 411 RGHSQEGSPDSAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHL 470

Query: 291 PNSVTYNALI 300
           P+S  + +++
Sbjct: 471 PDSALFRSVM 480


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 133/280 (47%), Gaps = 41/280 (14%)

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP----DACSYN 156
           +AL+++ +  +    +  +  N LL+     GKLD   E F+I ++ +      D  SYN
Sbjct: 477 KALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLD---EAFRIQKEILGRGCVMDRVSYN 533

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR- 215
            LI GC   ++L++A+   DEMVKR L+P   T+  LI GL    +V+EA++  +D  R 
Sbjct: 534 TLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRN 593

Query: 216 -----VY----------------------------NVKPDGQVFASLIKGLCAVGELSLA 242
                VY                            NV+P+  V+  LI+  C  G LS+A
Sbjct: 594 GMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMA 653

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
           L ++E+M    I  ++  Y+SLI  +    R  E   + +EM+  G +PN   Y ALI G
Sbjct: 654 LELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDG 713

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           + K         +L EM  K    N I+Y V++GG  +DG
Sbjct: 714 YGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDG 753



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 128/250 (51%), Gaps = 12/250 (4%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG--KLDRMKELFQIME----KYVSPDA 152
           L+ A    DEM    ++     ++ L+     CG   +++++E  Q  +      + PD 
Sbjct: 545 LDEAFMFLDEMVKRGLKPDNYTYSILI-----CGLFNMNKVEEAIQFWDDCKRNGMLPDV 599

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +Y+++I GC  + R E+  + FDEM+ + +QP  V +  LI   C   R+  AL+L+ED
Sbjct: 600 YTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELRED 659

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M+   + P+   + SLIKG+  +  +  A  + EEM  + +E +   Y++LI    K G
Sbjct: 660 -MKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLG 718

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           +  +   +L+EM  +   PN +TY  +I G+ ++ +   A  +L+EM +KG   + I+Y 
Sbjct: 719 QMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYK 778

Query: 333 VILGGLCKDG 342
             + G  K G
Sbjct: 779 EFIYGYLKQG 788



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 151/294 (51%), Gaps = 3/294 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ ++ +I  LG    +DE      ++  +  + P  I +  ++    RA+ +  A  +
Sbjct: 283 NVVTFNTVIDGLGMCGRYDEAFMFKEKMV-ERGMEPTLITYSILVKGLTRAKRIGDAYFV 341

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
             EM+       V  +N L++  +  G L++  E+  +M  K +S  + +YN LI G   
Sbjct: 342 LKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCK 401

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + + ++A ++  EM+         +F ++I  LC  L  D AL+   +++ + N+ P G 
Sbjct: 402 NGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEML-LRNMSPGGG 460

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           +  +LI GLC  G+ S AL +  + +     +D    ++L+  L +AG+ +E   I KE+
Sbjct: 461 LLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEI 520

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             RGC  + V+YN LISG C ++  + AF  LDEM  +G K +  +Y++++ GL
Sbjct: 521 LGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGL 574



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 107/218 (49%), Gaps = 1/218 (0%)

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
           N LL   +   +  +  E F ++ K VSPD   +   I+      ++E+A K+F +M + 
Sbjct: 219 NILLTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEA 278

Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
            + P +VTF T+I GL +  R DEA   KE ++    ++P    ++ L+KGL     +  
Sbjct: 279 GVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVE-RGMEPTLITYSILVKGLTRAKRIGD 337

Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
           A  V +EM +     +  +Y++LI +  +AG  N+   I   M  +G    S TYN LI 
Sbjct: 338 AYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIK 397

Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           G+CK    + A  +L EM   G   N  S+  ++  LC
Sbjct: 398 GYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLC 435



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 147/336 (43%), Gaps = 42/336 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            L+ Y +++  L RAK   +   +L ++       P  I++ N+I  +  A  L +A+++
Sbjct: 318 TLITYSILVKGLTRAKRIGDAYFVLKEMTKKG-FPPNVIVYNNLIDSFIEAGSLNKAIEI 376

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            D M S  + +T   +NTL+      G+ D  + L  +++    + +  S+  +I  C++
Sbjct: 377 KDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVI--CLL 434

Query: 165 SRRL--EDAWKVFDEMVKRRLQP------TLV---------------------------- 188
              L  + A +   EM+ R + P      TL+                            
Sbjct: 435 CSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDT 494

Query: 189 -TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
            T   L++GLC   ++DEA +++++I+    V  D   + +LI G C   +L  A    +
Sbjct: 495 RTSNALLHGLCEAGKLDEAFRIQKEILGRGCVM-DRVSYNTLISGCCGKKKLDEAFMFLD 553

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           EMV+  ++ D   YS LI  LF   +  E      + K  G  P+  TY+ +I G CK E
Sbjct: 554 EMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAE 613

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             E      DEM  K  + N + YN ++   C+ G+
Sbjct: 614 RTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGR 649



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 92/194 (47%), Gaps = 2/194 (1%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P   + NIL+   V +   +   + FD +V + + P +  F T I   C   +V+EA+KL
Sbjct: 213 PSKTTCNILLTSLVRANEFQKCCEAFD-VVCKGVSPDVYLFTTAINAFCKGGKVEEAVKL 271

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
               M    V P+   F ++I GL   G    A   KE+MV   +E     YS L+  L 
Sbjct: 272 FSK-MEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLT 330

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           +A R  +   +LKEM ++G  PN + YN LI  F +      A  I D M  KG      
Sbjct: 331 RAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSS 390

Query: 330 SYNVILGGLCKDGK 343
           +YN ++ G CK+G+
Sbjct: 391 TYNTLIKGYCKNGQ 404


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 153/312 (49%), Gaps = 18/312 (5%)

Query: 41  KPFRYNLLHYDLIIT---KLGRAK----MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           + FR++ + Y  II    K+G+ +    MF +M++I        R+ P  I++  VI   
Sbjct: 169 RGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKI--------RVYPNLIMYNTVIDGL 220

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF--QIMEKYVSPD 151
            +  L++ A  +  EM    +++ V  +N++++   + G+     +L    ++   V PD
Sbjct: 221 CKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPD 280

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             ++NILI G     R+ +A+ V   M+KR  +P +V++  L+ G CL   V EA K   
Sbjct: 281 VYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEA-KQVF 339

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           D M      P+   + +LI G C V  +  A+ +  EM    +  D   Y+ L+  L K+
Sbjct: 340 DKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKS 399

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           GR      +++ M+  G   + +TYN L+  + K E F+ A  +   + + G   N  +Y
Sbjct: 400 GRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTY 459

Query: 332 NVILGGLCKDGK 343
           N++L GLCK G+
Sbjct: 460 NILLDGLCKSGR 471



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 154/334 (46%), Gaps = 44/334 (13%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++ +++ L + K ++ +  +   L+    I P  I F  +I  + +   +  A  +   +
Sbjct: 72  FNKLLSTLIKLKRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNI 131

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP----DACSYNILIHGCVVS 165
                Q+ V+   TL+  K  C K  R+ E   ++ +YV      D   Y  +I+G    
Sbjct: 132 LKMGFQIDVRILTTLM--KGLCLK-GRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKI 188

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            +  DA ++F +M K R+ P L+ + T+I GLC +  VDEA  L  +++    ++ D   
Sbjct: 189 GKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVE-NGIELDVYS 247

Query: 226 FASLIKGLCAVGELSLALGVKEEMV-RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           + S+I G C+VG    A+ + +EMV R K+  D   ++ LI  L K GR +E   ++  M
Sbjct: 248 YNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVM 307

Query: 285 KERGCKPNSVTYNAL-----------------------------------ISGFCKEEDF 309
            +RG KP+ V+YNAL                                   I+G+CK    
Sbjct: 308 IKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMV 367

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + A  +L EM +K    + ++YN +L GL K G+
Sbjct: 368 DEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGR 401



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 2/116 (1%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           P ++I  NV+   Y +    ++AL +F  +    +   ++ +N LL+     G+L   KE
Sbjct: 418 PADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKE 477

Query: 140 LFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           +FQ++  K   P+  +YNI+IHG      L++A  +  +MV     P  +TF T++
Sbjct: 478 IFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNYLPNYITFDTIV 533


>gi|255660906|gb|ACU25622.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 484

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 164/327 (50%), Gaps = 27/327 (8%)

Query: 35  TEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVPK--- 82
           T  H L+ FR+    NL  ++      II  LGRA   +  + IL         +PK   
Sbjct: 24  TSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLD-------IPKKGL 76

Query: 83  ---EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
              E ++  +I  YG+  +++ +++MF +M    V+ T+K +N L    L  G+    K 
Sbjct: 77  EWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKR 136

Query: 140 LF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            F +++ + + P   ++N++I G  +S ++E A + F++M  R + P +VT+ T+I G  
Sbjct: 137 YFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTIINGYY 196

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              +++EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A
Sbjct: 197 RVKKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNA 255

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTIL 316
             YS+L+  L  A +  E  +ILKEM ++   P  NS+ +  LIS  C   + +AA  +L
Sbjct: 256 ITYSTLLPGLCNAEKMTEARSILKEMMDKYLAPTDNSI-FMRLISSQCNSGNLDAAADVL 314

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
             M           Y V++   CK G+
Sbjct: 315 KAMIRLSVPTEAGHYGVLIENFCKAGQ 341



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 129/263 (49%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F++M S  +   V  +NT++N      K++  ++ F  M+ + 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDMKSREISPDVVTYNTIINGYYRVKKMEEAEKYFVEMKGRN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   +++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMTEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + +++M  Y    D  +F  LI   C  G L  A  V + M+R  +  +AG Y  LI  
Sbjct: 276 SILKEMMDKYLAPTDNSIFMRLISSQCNSGNLDAAADVLKAMIRLSVPTEAGHYGVLIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             KAG+ ++   +L ++ E+    +P S        YN +I   C       A  ++ ++
Sbjct: 336 FCKAGQYDQAVKLLDKLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQAAKAEALVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +P + N ++ G  ++G
Sbjct: 396 LKLGVQ-DPTALNTLIRGHSQEG 417



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 135/297 (45%), Gaps = 18/297 (6%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D ++  + P   +++ Y+ II    R K  +E ++   ++K    I P  + +  +I  Y
Sbjct: 175 DMKSREISP---DVVTYNTIINGYYRVKKMEEAEKYFVEMK-GRNIEPTVVTYTTLIKGY 230

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSP-D 151
                ++ AL++ +EM  F ++     ++TLL       K+   + +  ++M+KY++P D
Sbjct: 231 VSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMTEARSILKEMMDKYLAPTD 290

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-- 209
              +  LI     S  L+ A  V   M++  +      +G LI   C   + D+A+KL  
Sbjct: 291 NSIFMRLISSQCNSGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKAGQYDQAVKLLD 350

Query: 210 ----KEDIMR---VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
               K+ I+R     +++P    +  +I+ LC  G+ + A  +  ++++  ++ D    +
Sbjct: 351 KLIEKDIILRPQSTLHLEPSA--YNPMIEYLCNNGQAAKAEALVRQLLKLGVQ-DPTALN 407

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           +LI    + G  +    +LK M  R        Y++L+  + K+ +   A   LD M
Sbjct: 408 TLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYDSLVQSYLKKNEPADAKAALDSM 464


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 141/271 (52%), Gaps = 5/271 (1%)

Query: 76  DTRIVPKEIIFCNVIGFYG--RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133
           D ++V    +  N +  YG  + + +  A  ++ EM S  +   V  ++ L++     GK
Sbjct: 69  DGKLVQLNAVMYNTV-IYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGK 127

Query: 134 LDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           L    +LF +I+ + + PD  ++NIL+ G    R++++   VF  M+K+ + P +VT+ +
Sbjct: 128 LKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNS 187

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           L+ G  L   V+ A K   + M    V PD + +  LI G C + ++  A+ +  EM   
Sbjct: 188 LVDGYRLVKEVNTA-KSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCK 246

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
            I  +   Y+SLI  L K+GR +    ++ +M +RG  PN +TYN++I    K    + A
Sbjct: 247 NIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKA 306

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             ++ +  D+G + +  +Y +++ GLCK G+
Sbjct: 307 IALITKFKDQGIQPSMYTYTILIDGLCKGGR 337



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 141/280 (50%), Gaps = 3/280 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + N + Y+ +I  + + K  ++   +  ++     I P  + +  +I  +     L+
Sbjct: 71  KLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMV-SKGISPNVVTYSALISGFFVVGKLK 129

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
            A+ +F+++   N++     FN L++      K+   K +F +M K  + PD  +YN L+
Sbjct: 130 DAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLV 189

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G  + + +  A  +F+ M +  + P + ++  LI G C   +VD+A+ L  + M   N+
Sbjct: 190 DGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNE-MHCKNI 248

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+   + SLI GL   G +S AL + ++M    +  +   Y+S+I ALFK  + ++  A
Sbjct: 249 IPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIA 308

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           ++ + K++G +P+  TY  LI G CK    + A  I +++
Sbjct: 309 LITKFKDQGIQPSMYTYTILIDGLCKGGRLKDARNIFEDL 348



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 94/190 (49%), Gaps = 1/190 (0%)

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           D  SY  LIHG         A  +   +  + +Q   V + T+IYG+C +  V++A  L 
Sbjct: 41  DQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLY 100

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
            + M    + P+   +++LI G   VG+L  A+ +  +++ + I+ D   ++ L+    K
Sbjct: 101 SE-MVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCK 159

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
             +  E   +   M ++G  P+ VTYN+L+ G+   ++   A +I + M   G   +  S
Sbjct: 160 DRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRS 219

Query: 331 YNVILGGLCK 340
           YN+++ G CK
Sbjct: 220 YNILINGFCK 229



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 86/160 (53%), Gaps = 1/160 (0%)

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P  +T  TLI GLCL+ ++ +A  L  D +       D   + +LI GLC VGE   AL
Sbjct: 4   HPNTITLNTLIKGLCLKGQIHQAF-LFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAAL 62

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            + + +    ++++A +Y+++I  + K    N+   +  EM  +G  PN VTY+ALISGF
Sbjct: 63  DLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGF 122

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
                 + A  + +++  +  K +  ++N+++ G CKD K
Sbjct: 123 FVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRK 162



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 94/190 (49%), Gaps = 5/190 (2%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P+  + N LI G  +  ++  A+   D++V        V++GTLI+GLC   +V E    
Sbjct: 5   PNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLC---KVGETRAA 61

Query: 210 KEDIMRVYN--VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + + RV    V+ +  ++ ++I G+C    ++ A  +  EMV   I  +   YS+LIS 
Sbjct: 62  LDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISG 121

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
            F  G+  +   +  ++     KP+  T+N L+ GFCK+   +   T+   M  +G   +
Sbjct: 122 FFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPD 181

Query: 328 PISYNVILGG 337
            ++YN ++ G
Sbjct: 182 VVTYNSLVDG 191



 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%)

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G  PN++T N LI G C +     AF   D++   G   + +SY  ++ GLCK G+
Sbjct: 2   GYHPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGE 57


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 138/280 (49%), Gaps = 41/280 (14%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNP----KLTCGKLDRMKELFQIMEKYVSPDACSYNI 157
           ALQ+  ++    VQ  V  +NT+++     KL     D   E+   + K + PD  +Y  
Sbjct: 188 ALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEM---IVKRIFPDVVTYTT 244

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA----------- 206
           LI+GC++  RL++A  +F++M+ + ++P + TF  L+ GLC E  + +A           
Sbjct: 245 LIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQG 304

Query: 207 -----------------LKLKEDIMRVYN------VKPDGQVFASLIKGLCAVGELSLAL 243
                            +K +     V+N      V PD Q ++ +I GLC    +  A+
Sbjct: 305 VDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAV 364

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            + +EM    +  +   Y+SLI  L K GR ++   ++ EM  RG   + +TY++L+   
Sbjct: 365 NLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDAL 424

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           CK    + A T++ ++ D+G + N  +Y +++ GLCK+G+
Sbjct: 425 CKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGR 464



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 154/300 (51%), Gaps = 7/300 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL--LERAL 103
           N++ Y+ II  L + K+      +  ++    RI P  + +  +I  YG   +  L+ A+
Sbjct: 203 NVVMYNTIIDSLCKDKLVIHASDLCSEMI-VKRIFPDVVTYTTLI--YGCLIVGRLKEAV 259

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
            +F++M   N++  V  FN L++     G++ + + +  +M K  V  +  +YN L+ G 
Sbjct: 260 GLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGY 319

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
            + ++   A  VF+ M +R + P + ++  +I GLC    VDEA+ L ++ M   ++ P+
Sbjct: 320 FLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKE-MHSKSMAPN 378

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + SLI GL   G +S A  +  EM       D   YSSL+ AL K  + ++   ++ 
Sbjct: 379 TVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLIT 438

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++K++G +PN  TY  L+ G CK    + A  +  ++  KG   +   YNV++ GLCK+G
Sbjct: 439 KIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEG 498



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 124/254 (48%), Gaps = 11/254 (4%)

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK----YVS 149
           G+ R    AL   D++ +    +    + TL+N     G+    +   Q++ K     V 
Sbjct: 148 GKVR---EALHFHDDVIAKGFHLDQVSYGTLINGLCKTGE---TRAALQVLRKIDGLLVQ 201

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P+   YN +I      + +  A  +  EM+ +R+ P +VT+ TLIYG  +  R+ EA+ L
Sbjct: 202 PNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGL 261

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
               M + N+KPD   F  L+ GLC  GE+  A  V   M++  ++ +   Y+SL+   F
Sbjct: 262 FNQ-MLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYF 320

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
              ++N+   +   M  RG  P+  +Y+ +I+G CK +  + A  +  EM  K    N +
Sbjct: 321 LVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTV 380

Query: 330 SYNVILGGLCKDGK 343
           +YN ++ GL K G+
Sbjct: 381 TYNSLIDGLLKYGR 394



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 125/238 (52%), Gaps = 3/238 (1%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNIL 158
            +A  +F+ M+   V   V+ ++ ++N       +D    LF+ M  K ++P+  +YN L
Sbjct: 326 NKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSL 385

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G +   R+ DAW + +EM  R     ++T+ +L+  LC   +VD+A+ L   I +   
Sbjct: 386 IDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKI-KDQG 444

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           ++P+   +  L+ GLC  G L  A  V ++++     +D  +Y+ +++ L K G  +E  
Sbjct: 445 IQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEAL 504

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK-ANPISYNVIL 335
           +++ +M++ GC P++VTY  L+    + +  + A  +L EM  +G    + IS N +L
Sbjct: 505 SLVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVKLLREMIVQGSAVGSNISSNSML 562



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 115/274 (41%), Gaps = 44/274 (16%)

Query: 107 DEMSSFNVQMTVKF-------FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNIL 158
           D +SSFN  + ++        FN +L+  +            + ME K + PD  ++NIL
Sbjct: 46  DAVSSFNHILHMRNPVQPIFEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNIL 105

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+       L  A+ V  ++ K    P  VT  TLI GLCL  +V EAL   +D++    
Sbjct: 106 INCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVI-AKG 164

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVK-------------------------------- 246
              D   + +LI GLC  GE   AL V                                 
Sbjct: 165 FHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHAS 224

Query: 247 ---EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
               EM+  +I  D   Y++LI      GR  E   +  +M  +  KP+  T+N L+ G 
Sbjct: 225 DLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGL 284

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           CKE + + A  +L  M  +G  +N ++YN ++ G
Sbjct: 285 CKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDG 318



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 107/208 (51%), Gaps = 3/208 (1%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DAC 153
           + ++++ A+ +F EM S ++      +N+L++  L  G++    +L   M     P D  
Sbjct: 356 KTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVI 415

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +Y+ L+     + +++ A  +  ++  + +QP + T+  L+ GLC   R+ +A  + +D+
Sbjct: 416 TYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDL 475

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           + +     D +++  ++ GLC  G    AL +  +M  +    DA  Y +L+ ALF+  +
Sbjct: 476 L-IKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALFENDK 534

Query: 274 KNEFPAILKEMKERGCKPNS-VTYNALI 300
            ++   +L+EM  +G    S ++ N+++
Sbjct: 535 NDKAVKLLREMIVQGSAVGSNISSNSML 562



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 4/177 (2%)

Query: 167 RLEDAWKVFDEMVKRR--LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            ++DA   F+ ++  R  +QP +  F  ++  L        A+   +  M +  ++PD  
Sbjct: 43  NVDDAVSSFNHILHMRNPVQP-IFEFNKILSSLVKLNHFHTAISFSKQ-MELKQIQPDLF 100

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F  LI   C +G L+ A  V  ++ +     D    ++LI  L   G+  E      ++
Sbjct: 101 TFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDV 160

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             +G   + V+Y  LI+G CK  +  AA  +L ++     + N + YN I+  LCKD
Sbjct: 161 IAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKD 217



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 2/143 (1%)

Query: 202 RVDEALKLKEDIMRVYN-VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            VD+A+     I+ + N V+P  + F  ++  L  +     A+   ++M   +I+ D   
Sbjct: 43  NVDDAVSSFNHILHMRNPVQPIFE-FNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFT 101

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
           ++ LI+     G  N   ++L ++ + G  P++VT   LI G C       A    D++ 
Sbjct: 102 FNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVI 161

Query: 321 DKGCKANPISYNVILGGLCKDGK 343
            KG   + +SY  ++ GLCK G+
Sbjct: 162 AKGFHLDQVSYGTLINGLCKTGE 184


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 157/332 (47%), Gaps = 40/332 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF-CNVIGFYGRARLLERALQ 104
           N++ Y  +I  L +A++ D  + +  Q+  D  + P    + C + G+    +  E  +Q
Sbjct: 195 NVVTYTTVIDGLCKAQVVDRAKGVFQQMI-DRGVKPDNGTYNCLIHGYLSTGKWKE-VVQ 252

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG-- 161
           M +EMS+  ++     +  LL+     G+    +  F  M  K + PD   Y IL+HG  
Sbjct: 253 MLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYA 312

Query: 162 -------------------------------CVVSRR--LEDAWKVFDEMVKRRLQPTLV 188
                                          C  +++  +E+A  +F++M ++ L P +V
Sbjct: 313 TKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVV 372

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           +FG LI  LC   RVD+A+ L+ + M    V P+  VF+SL+ GLC VG+   A  +  E
Sbjct: 373 SFGALIDALCKLGRVDDAV-LQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFE 431

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           ++   I +DA  +++L+  L   GR  E   ++  M   G +PN ++YN L++G C    
Sbjct: 432 VLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGR 491

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            + A  +LD M   G K N  +Y ++L G CK
Sbjct: 492 IDEAAKLLDVMVSNGLKPNEFTYTILLRGYCK 523



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 152/295 (51%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++++     +  M +E   I ++++    + P  + F  +I    +   ++ A+  F++M
Sbjct: 339 FNIMFCAYAKKAMIEEAMHIFNKMRQQG-LSPDVVSFGALIDALCKLGRVDDAVLQFNQM 397

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
            +  V   +  F++L+    T GK ++ +ELF +++++ +  DA  +N L+       R+
Sbjct: 398 INEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRV 457

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A ++ D M++  ++P ++++ TL+ G CL  R+DEA KL  D+M    +KP+   +  
Sbjct: 458 MEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLL-DVMVSNGLKPNEFTYTI 516

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L++G C    +  A  +  EM+   +      Y++++  LF+ GR +E   +   M    
Sbjct: 517 LLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSR 576

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            K +  TYN +++G CK    + AF +   +  K  + + +++N+++G L K G+
Sbjct: 577 TKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGR 631



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 131/254 (51%), Gaps = 9/254 (3%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLN--PKLTCGKL-DRMKELFQIMEKY----VSPD 151
           L+ AL++FDE+       +V+ FN LL    +  C    +R+  LF  M +     V+P+
Sbjct: 30  LDEALKLFDELLHCARPASVRAFNQLLTVVSRAGCSSASERVVSLFTRMARECSSKVAPN 89

Query: 152 ACSYNILIHGCVVSR-RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           AC+Y+ILI GC     RLE  +  F  ++K   +  ++    L+ GLC   RVDEA  + 
Sbjct: 90  ACTYSILI-GCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDIL 148

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
              M  +   PD   + ++I G    G++  A  +  EM+   I  +   Y+++I  L K
Sbjct: 149 LLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCK 208

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
           A   +    + ++M +RG KP++ TYN LI G+     ++    +L+EM   G + + I+
Sbjct: 209 AQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCIT 268

Query: 331 YNVILGGLCKDGKC 344
           Y ++L  LCK+G+C
Sbjct: 269 YALLLDYLCKNGRC 282



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 145/302 (48%), Gaps = 2/302 (0%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           +R N++    ++  L  AK  DE   IL     +    P  + +  VI  + R   +E+A
Sbjct: 121 WRVNVIVISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKA 180

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG 161
             +F EM    +   V  + T+++       +DR K +FQ M ++ V PD  +YN LIHG
Sbjct: 181 YNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHG 240

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
            + + + ++  ++ +EM    L+P  +T+  L+  LC   R  EA +L  D M    +KP
Sbjct: 241 YLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREA-RLFFDSMFRKGIKP 299

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D  ++A L+ G    G LS      + MV + +  +  I++ +  A  K     E   I 
Sbjct: 300 DVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIF 359

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            +M+++G  P+ V++ ALI   CK    + A    ++M ++G   N   ++ ++ GLC  
Sbjct: 360 NKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTV 419

Query: 342 GK 343
           GK
Sbjct: 420 GK 421



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 114/229 (49%), Gaps = 6/229 (2%)

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACS 154
            R++E A ++ D M    V+  V  +NTL+      G++D   +L  +M    + P+  +
Sbjct: 455 GRVME-AQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFT 513

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           Y IL+ G   +RR++DA+ +F EM+ + + P + T+ T+++GL    R  EA +L  +++
Sbjct: 514 YTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMI 573

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
                K D   +  ++ GLC    +  A  +   +     ++D+  ++ +I AL K GRK
Sbjct: 574 NS-RTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRK 632

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKE---EDFEAAFTILDEMG 320
            +   +   +   G  P+ VTY  +     +E    +F+  F+ +++ G
Sbjct: 633 EDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSG 681


>gi|255660902|gb|ACU25620.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 484

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 163/321 (50%), Gaps = 15/321 (4%)

Query: 35  TEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVPKEII 85
           T  H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +   E +
Sbjct: 24  TSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDM 82

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIM 144
           +  +I  YG+  +++ +++MF +M    V+ T+K +N L    L  G+    K  F +++
Sbjct: 83  WVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFXVILRRGRYMMAKRYFNKML 142

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
            + + P   ++N++I G  +S ++E A + F++M  R + P +VT+ T+I G     +++
Sbjct: 143 SEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKME 202

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  YS+L
Sbjct: 203 EAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTL 261

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           +  L  A +  E  +ILKEM ++   P  NS+ +  LIS  C   + +AA  +L  M   
Sbjct: 262 LPGLCNAEKMTEARSILKEMMDKYLAPTDNSI-FMRLISSQCNSGNLDAAADVLKAMIRL 320

Query: 323 GCKANPISYNVILGGLCKDGK 343
                   Y V++   CK G+
Sbjct: 321 SVPTEAGHYGVLIENFCKAGQ 341



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 129/263 (49%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F++M S  +   V  +NT++N      K++  ++ F  M+ + 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   +++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMTEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + +++M  Y    D  +F  LI   C  G L  A  V + M+R  +  +AG Y  LI  
Sbjct: 276 SILKEMMDKYLAPTDNSIFMRLISSQCNSGNLDAAADVLKAMIRLSVPTEAGHYGVLIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             KAG+ ++   +L ++ E+    +P S        YN +I   C       A  ++ ++
Sbjct: 336 FCKAGQYDQAVKLLDKLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQAAKAEALVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +P + N ++ G  ++G
Sbjct: 396 LKLGVQ-DPTALNTLIRGHSQEG 417



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 135/297 (45%), Gaps = 18/297 (6%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D ++  + P   +++ Y+ +I    R K  +E ++   ++K    I P  + +  +I  Y
Sbjct: 175 DMKSREISP---DVVTYNTMINGYYRVKKMEEAEKYFVEMK-GRNIEPTVVTYTTLIKGY 230

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSP-D 151
                ++ AL++ +EM  F ++     ++TLL       K+   + +  ++M+KY++P D
Sbjct: 231 VSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMTEARSILKEMMDKYLAPTD 290

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-- 209
              +  LI     S  L+ A  V   M++  +      +G LI   C   + D+A+KL  
Sbjct: 291 NSIFMRLISSQCNSGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKAGQYDQAVKLLD 350

Query: 210 ----KEDIMR---VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
               K+ I+R     +++P    +  +I+ LC  G+ + A  +  ++++  ++ D    +
Sbjct: 351 KLIEKDIILRPQSTLHLEPSA--YNPMIEYLCNNGQAAKAEALVRQLLKLGVQ-DPTALN 407

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           +LI    + G  +    +LK M  R        YN+L+  + K+ +   A   LD M
Sbjct: 408 TLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPADAKAALDSM 464


>gi|357159149|ref|XP_003578355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Brachypodium distachyon]
          Length = 857

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 150/303 (49%), Gaps = 5/303 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F+++   Y  +I  LG+A+ F  M+ +LH++  D R  P  + +  +I  YGRA  L  A
Sbjct: 360 FKHDGHTYTTMIGILGQARQFGIMRNLLHEMNRD-RCKPTVVTYNRIIHAYGRANYLREA 418

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
           +++F+EM     +     + TL++     G L+   +L+  M++  +SPD  +Y+ +++ 
Sbjct: 419 VKVFEEMEEAGYEPDRVTYCTLIDIHAKAGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNC 478

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                +L  A+K+F EM++    P LVT+  +I         D  +KL  D M+V   +P
Sbjct: 479 LGKGGQLAAAYKLFCEMIENGCTPNLVTYNIIIALQAKARNYDNVVKLYRD-MQVAGFRP 537

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   ++ +++ L   G L  A  V  EM RD    D  +Y  L+    KAG  ++     
Sbjct: 538 DKITYSIVMEVLGHCGHLDEAEAVFIEMRRDWAP-DEPVYGLLVDLWGKAGNVDKALGWY 596

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             M + G +PN  T N+L+S F K   F+ A+++L  M  +G   +  +Y ++L   C D
Sbjct: 597 HAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLL-SCCTD 655

Query: 342 GKC 344
              
Sbjct: 656 AHA 658



 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 52/259 (20%), Positives = 106/259 (40%), Gaps = 24/259 (9%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL+ Y++II    +A+ +D + ++   ++      P +I +  V+   G    L+ A  +
Sbjct: 503 NLVTYNIIIALQAKARNYDNVVKLYRDMQ-VAGFRPDKITYSIVMEVLGHCGHLDEAEAV 561

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           F EM   +       +  L++     G +D+    +  M +  + P+  + N L+   + 
Sbjct: 562 FIEMRR-DWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLK 620

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY---------GLCLELRVDEALKLKEDIMR 215
             R +DA+ V   M+ + L P+L T+  L+          GLC +L           ++ 
Sbjct: 621 INRFQDAYSVLQNMLAQGLVPSLQTYTLLLSCCTDAHAQMGLCCQLMAITGHPAHMFLLY 680

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
           + + +P G+      +               + M  +  E   G+  ++I  L K+G K 
Sbjct: 681 LPDAEPGGENVRDHTRYFL------------DMMHSEDRESKRGLMDAVIDFLHKSGLKE 728

Query: 276 EFPAILKEMKERGCKPNSV 294
           E   I +   ++   P+SV
Sbjct: 729 EAGFIWEVAAQKNVYPDSV 747


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 168/386 (43%), Gaps = 61/386 (15%)

Query: 3   TSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKM 62
           T ++  A L R++ DP  AL LF+             L P R +L+ +  ++  L RA+ 
Sbjct: 69  TPALLQAALRRVRLDPDAALHLFR-------------LAPSRPSLVSHAQLLHILARARR 115

Query: 63  FDEMQQILHQLK-HDTRIVP------KEIIFCNV-----IGFYGRARLLERALQMFDEMS 110
           F + + +L  L  H   + P      ++  F  V     +  +  A  L  AL +FD M 
Sbjct: 116 FHDARALLSSLPPHAEPLFPHLAEVYRDFTFSAVSFDLLLRAHADAGQLSSALNVFDGMG 175

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL- 168
               + +++  N LLN  +  G       ++ Q+    V PD  +  I+        R+ 
Sbjct: 176 KVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVA 235

Query: 169 ----------------------------------EDAWKVFDEMVKRRLQPTLVTFGTLI 194
                                             EDA ++ + + ++ L P +VT+  L+
Sbjct: 236 QAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLV 295

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
            G C + R++EA ++ +++    ++  D   +  +I G C  G +  A  V+ EM    I
Sbjct: 296 KGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGI 355

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
            ++  +Y+++I+ L K GR  E   +L+EM++ G +P+  +YN LI G+C+E     AF 
Sbjct: 356 HVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFE 415

Query: 315 ILDEMGDKGCKANPISYNVILGGLCK 340
           +   M   G  A  ++YN +L G C 
Sbjct: 416 MCRMMVRNGLAATTLTYNTLLKGFCS 441



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 157/334 (47%), Gaps = 37/334 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y L++    +    +E ++++ ++K    IV  E+ +  +I  Y +   ++ A ++
Sbjct: 287 NVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRV 346

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            +EM    + + +  +NT++N     G+++ ++++ Q ME   + PD  SYN LI G   
Sbjct: 347 RNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCR 406

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +  A+++   MV+  L  T +T+ TL+ G C    +D+AL+L   +M    V P+  
Sbjct: 407 EGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWF-LMLKRGVAPNEI 465

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
             ++L+ GL   G+   AL + +E +   +  +   ++++I+ L K GR  E   +L  M
Sbjct: 466 SCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRM 525

Query: 285 KERGCKPNSVTYNALISGFCK----------------------EEDFEAAFT-------- 314
           KE  C P+S+TY  L  G+CK                       E F +  T        
Sbjct: 526 KELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQW 585

Query: 315 -----ILDEMGDKGCKANPISYNVILGGLCKDGK 343
                I  EM  +G   N ++Y  ++ G CK+G 
Sbjct: 586 HKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGN 619



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 142/324 (43%), Gaps = 27/324 (8%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ ++ +I  L +     E +++L ++K + R  P  + +  +   Y +   L  A  +
Sbjct: 498 NVITFNTVINGLCKIGRMAEAEELLDRMK-ELRCPPDSLTYRTLFDGYCKLGQLGTATHL 556

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            ++M       +V+ FN+ +       +  ++ ++   M  + +SP+  +Y  LI G   
Sbjct: 557 MNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCK 616

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA-LKLK------------- 210
              L +A  ++ EMV   + P +     L+     E +VDEA L L+             
Sbjct: 617 EGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSI 676

Query: 211 -----EDIMRVYNVKPDGQ------VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
                + I  V +   DG       ++  +I GLC  G ++ A  + E +   +   D  
Sbjct: 677 STIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNF 736

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YSSLI     +G  +E  ++   M   G  PN +TYN+LI G CK      A  + +++
Sbjct: 737 TYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKL 796

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             KG   N I+YN ++   CK+GK
Sbjct: 797 QSKGISPNGITYNTLIDEYCKEGK 820



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 21/226 (9%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNI 157
           +++   + D ++  N       +N ++      G++   K LF+ +  K   PD  +Y+ 
Sbjct: 681 IDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSS 740

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LIHGC  S  +++A+ + D M+   L P ++T+ +LIYGLC   ++  A+ L    ++  
Sbjct: 741 LIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNK-LQSK 799

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + P+G  + +LI   C  G+ + A  +K++MV +                   G   E 
Sbjct: 800 GISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEE-------------------GYMEEA 840

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
             +L +M E    PN +TY  LI G+ K  + E    + DEM  +G
Sbjct: 841 IKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRG 886



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 138/311 (44%), Gaps = 28/311 (9%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++  IT    AK + ++  I H       + P  + +  +I  + +   L  A  ++ EM
Sbjct: 572 FNSFITGHFIAKQWHKVNDI-HSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEM 630

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSR-RL 168
            +  +   V   + L++     GK+D   E   +++K V+ D      +I GC +S   +
Sbjct: 631 VNNGMNPNVFICSALMSCFYKEGKVD---EANLVLQKLVNID------MIPGCSISTIEI 681

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           +    V D +         V +  +I+GLC   R+ +A  L E  +R     PD   ++S
Sbjct: 682 DKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFES-LRNKRFLPDNFTYSS 740

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G  A G +  A  +++ M+   +  +   Y+SLI  L K+G+ +    +  +++ +G
Sbjct: 741 LIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKG 800

Query: 289 CKPNSVTYNALISGFCKE----EDF------------EAAFTILDEMGDKGCKANPISYN 332
             PN +TYN LI  +CKE    E F            E A  +LD+M +     N I+Y 
Sbjct: 801 ISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYC 860

Query: 333 VILGGLCKDGK 343
            ++ G  K G 
Sbjct: 861 TLIHGYIKSGN 871



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 2/194 (1%)

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
            A S+++L+     + +L  A  VFD M K   +P+L +   L+  L        A  + 
Sbjct: 147 SAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVY 206

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
              MR+  V PD    A + K  C  G ++ A+   EEM    +E++   Y +++     
Sbjct: 207 GQ-MRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCG 265

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG-CKANPI 329
            G   +   IL+ ++ +G  PN VTY  L+ G+CK+   E A  ++ EM + G    + +
Sbjct: 266 MGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEV 325

Query: 330 SYNVILGGLCKDGK 343
           +Y +++ G C+ G+
Sbjct: 326 AYGMMINGYCQRGR 339



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 92/202 (45%), Gaps = 20/202 (9%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
            P   N++ +++II  L ++    + + +   L+ + R +P    + ++I     +  ++
Sbjct: 695 NPHSANVM-WNVIIFGLCKSGRIADAKSLFESLR-NKRFLPDNFTYSSLIHGCAASGSID 752

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
            A  + D M S  +   +  +N+L+      GKL R   LF ++  K +SP+  +YN LI
Sbjct: 753 EAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLI 812

Query: 160 ----------------HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
                              V    +E+A K+ D+M++  + P  +T+ TLI+G      +
Sbjct: 813 DEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNM 872

Query: 204 DEALKLKEDIMRVYNVKPDGQV 225
           +E  KL ++ M +  + P   +
Sbjct: 873 EEISKLYDE-MHIRGLLPTNWI 893


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 157/311 (50%), Gaps = 6/311 (1%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           N   ++ LKP   N++ Y+ ++  L  A+ ++E +++L ++  D      ++ F  ++ F
Sbjct: 358 NRMPSYGLKP---NVVCYNTLLKGLCSAERWEETEELLAEM-FDKDCPLDDVTFNILVDF 413

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPD 151
           + +  L++R +++ ++M        V  + T++N     G +D    L + M      P+
Sbjct: 414 FCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPN 473

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             SY I++ G   + R  DA  +  +M+++      +TF TLI  LC +  V++A++L +
Sbjct: 474 TISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLK 533

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
             M V    PD   ++++I GL   G+   AL +   MV   +  +  IYSS+ SAL + 
Sbjct: 534 Q-MLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSRE 592

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           GR N+   +   +++   + ++V YNA+IS  CK  + E A   L  M   GC  N  +Y
Sbjct: 593 GRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTY 652

Query: 332 NVILGGLCKDG 342
            +++ GL  +G
Sbjct: 653 TILIRGLASEG 663



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 147/310 (47%), Gaps = 12/310 (3%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           A P+ P  Y   ++ ++     R ++ D +  +    +     +P   ++  ++    R 
Sbjct: 152 AVPVPPNAYT--YFPVVRALCARGRIADALAVLDEMPRRGCAPIPP--MYHVILEAACRG 207

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSY 155
                A+++ +++ +    + V   N +LN     G +D    L + +  +   PD  SY
Sbjct: 208 GGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSY 267

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC---LELRVDEALKLKED 212
           N ++ G  +++R     ++ +EMV+    P +VTF TLI  LC   L  RV E L     
Sbjct: 268 NAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQ--- 324

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M  +   PD +++A++I G+C  G L +A  +   M    ++ +   Y++L+  L  A 
Sbjct: 325 -MVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAE 383

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           R  E   +L EM ++ C  + VT+N L+  FC+    +    +L++M + GC  + I+Y 
Sbjct: 384 RWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYT 443

Query: 333 VILGGLCKDG 342
            ++ G CK+G
Sbjct: 444 TVINGFCKEG 453



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 119/240 (49%), Gaps = 2/240 (0%)

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNILIHGC 162
           ++ +EM        +  FNTL++     G  +R+ E L Q++E   +PD   Y  +I G 
Sbjct: 285 ELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGI 344

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
                LE A ++ + M    L+P +V + TL+ GLC   R +E  +L  ++    +   D
Sbjct: 345 CKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFD-KDCPLD 403

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              F  L+   C  G +   + + E+M+      D   Y+++I+   K G  +E   +LK
Sbjct: 404 DVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLK 463

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            M   GCKPN+++Y  ++ G C  E +  A  ++ +M  +GC  NPI++N ++  LCK G
Sbjct: 464 SMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKG 523



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 142/299 (47%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ ++  L  AK +  +Q+++ ++       P  + F  +I +  R  L ER  ++
Sbjct: 263 DVVSYNAVLKGLCMAKRWGCVQELMEEMVR-MACPPNIVTFNTLISYLCRNGLFERVHEV 321

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
             +M        ++ + T+++     G L+   E+   M  Y + P+   YN L+ G   
Sbjct: 322 LAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCS 381

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R E+  ++  EM  +      VTF  L+   C    VD  ++L E ++  +   PD  
Sbjct: 382 AERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLE-HGCMPDVI 440

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + ++I G C  G +  A+ + + M     + +   Y+ ++  L  A R  +   ++ +M
Sbjct: 441 TYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQM 500

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ++GC  N +T+N LI+  CK+   E A  +L +M   GC  + ISY+ ++ GL K GK
Sbjct: 501 IQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 559



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 156/334 (46%), Gaps = 38/334 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ ++ +I+ L R  +F+ + ++L Q+  +    P   ++  +I    +   LE A ++
Sbjct: 298 NIVTFNTLISYLCRNGLFERVHEVLAQMV-EHGCTPDIRMYATIIDGICKEGHLEVAHEI 356

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            + M S+ ++  V  +NTLL    +  + +  +EL  ++ +K    D  ++NIL+     
Sbjct: 357 LNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQ 416

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  ++   ++ ++M++    P ++T+ T+I G C E  +DEA+ L +  M     KP+  
Sbjct: 417 NGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS-MTACGCKPNTI 475

Query: 225 VFASLIKGLCAV-----------------------------------GELSLALGVKEEM 249
            +  ++KGLC+                                    G +  A+ + ++M
Sbjct: 476 SYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQM 535

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           + +    D   YS++I  L KAG+ +E   +L  M  +G  PN++ Y+++ S   +E   
Sbjct: 536 LVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRI 595

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
                + D + D   +++ + YN ++  LCK G+
Sbjct: 596 NKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGE 629



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 105/255 (41%), Gaps = 38/255 (14%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           +N ++      G+L+  + L   +   V P+A +Y  ++       R+ DA  V DEM +
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAVP--VPPNAYTYFPVVRALCARGRIADALAVLDEMPR 187

Query: 181 RRLQPTLVTFGTLIYGLC--------------LELR---------------------VDE 205
           R   P    +  ++   C              L  R                     VDE
Sbjct: 188 RGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDE 247

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           AL L  D+   +  +PD   + +++KGLC          + EEMVR     +   +++LI
Sbjct: 248 ALHLLRDLPS-FGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLI 306

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
           S L + G       +L +M E GC P+   Y  +I G CKE   E A  IL+ M   G K
Sbjct: 307 SYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLK 366

Query: 326 ANPISYNVILGGLCK 340
            N + YN +L GLC 
Sbjct: 367 PNVVCYNTLLKGLCS 381



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YN ++ G   + +LE A ++   +    + P   T+  ++  LC   R+ +AL + +++ 
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAV---PVPPNAYTYFPVVRALCARGRIADALAVLDEMP 186

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           R     P   ++  +++  C  G    A+ V E++      +D G  + +++A+   G  
Sbjct: 187 R-RGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSV 245

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +E   +L+++   GC+P+ V+YNA++ G C  + +     +++EM    C  N +++N +
Sbjct: 246 DEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTL 305

Query: 335 LGGLCKDG 342
           +  LC++G
Sbjct: 306 ISYLCRNG 313


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 148/301 (49%), Gaps = 4/301 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R ++  Y  +I  LG+A   DE     ++++ +    P  ++  N+I F G+A  L+ A+
Sbjct: 297 RPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREG-CRPDTVVMNNMINFLGKAGRLDDAM 355

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTC-GKLDRMKELFQIM-EKYVSPDACSYNILIHG 161
           ++F EM +     +V  +NT++        +   +   F+ M E  +SP + +Y+ILI G
Sbjct: 356 KLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDG 415

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              + R+E A  + +EM ++   P    + +LI  L    R D A +L +++        
Sbjct: 416 FCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCG-SS 474

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
             +V+A +IK L   G L  A+ + +EM +     D   Y++L+S L + G  +E  + +
Sbjct: 475 SARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTM 534

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           + M+E GC P+  +YN +++G  K      A  +L  M     + + +SYN +LG L   
Sbjct: 535 RRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHA 594

Query: 342 G 342
           G
Sbjct: 595 G 595



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 130/287 (45%), Gaps = 11/287 (3%)

Query: 58  GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT 117
           G   +F+EM+   HQ        P    +  +I   G+A  ++ A   F EM     +  
Sbjct: 283 GALSLFEEMR---HQYCR-----PDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPD 334

Query: 118 VKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSR-RLEDAWKVF 175
               N ++N     G+LD   +LFQ M      P   +YN +I     S+ R  +    F
Sbjct: 335 TVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWF 394

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           + M +  + P+  T+  LI G C   R+++A+ L E+ M      P    + SLI  L  
Sbjct: 395 ERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEE-MDEKGFPPCPAAYCSLIDALGK 453

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
                LA  + +E+  +     A +Y+ +I  L KAGR ++   +  EM + GC P+   
Sbjct: 454 AKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYA 513

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           YNAL+SG  +    + A + +  M + GC  +  SYN+IL GL K G
Sbjct: 514 YNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTG 560



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 143/300 (47%), Gaps = 23/300 (7%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI------GFYGRARLLERALQMF 106
           ++  LG AKM  +   I +Q+K   +  P    + ++I      G YG+        +++
Sbjct: 165 VVRMLGNAKMVSKAIAIFYQIK-TRKCQPTAQAYNSMIIMLMHEGQYGKVH------ELY 217

Query: 107 DEMSS----FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG 161
           +EMS+    F   MT   ++ L++     G+ D   +L   M E  + P    Y +LI  
Sbjct: 218 NEMSTEGHCFPDTMT---YSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITL 274

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 +  A  +F+EM  +  +P + T+  LI GL    R+DEA     ++ R    +P
Sbjct: 275 FFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQR-EGCRP 333

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA-GRKNEFPAI 280
           D  V  ++I  L   G L  A+ + +EM   +       Y+++I ALF++  R +E P+ 
Sbjct: 334 DTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSW 393

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            + MKE G  P+S TY+ LI GFCK    E A  +L+EM +KG    P +Y  ++  L K
Sbjct: 394 FERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 453



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 129/296 (43%), Gaps = 3/296 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I  L     + ++ ++ +++  +    P  + +  +I  + +    + A Q+ +EM
Sbjct: 197 YNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEM 256

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
               +Q T K +  L+        +     LF+ M  +Y  PD  +Y  LI G   + R+
Sbjct: 257 KENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRI 316

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           ++A+  F EM +   +P  V    +I  L    R+D+A+KL ++ M      P    + +
Sbjct: 317 DEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQE-MGTLRCIPSVVTYNT 375

Query: 229 LIKGLC-AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +IK L  +    S      E M    I   +  YS LI    K  R  +   +L+EM E+
Sbjct: 376 IIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEK 435

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G  P    Y +LI    K + ++ A  +  E+ +    ++   Y V++  L K G+
Sbjct: 436 GFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGR 491



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 87/179 (48%)

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           ++ +  A  +F ++  R+ QPT   + ++I  L  E +  +  +L  ++    +  PD  
Sbjct: 172 AKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTM 231

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +++LI   C +G    A  +  EM  + ++    IY+ LI+  FK    +   ++ +EM
Sbjct: 232 TYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEM 291

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + + C+P+  TY  LI G  K    + A+    EM  +GC+ + +  N ++  L K G+
Sbjct: 292 RHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGR 350



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 11/199 (5%)

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           D  +Y  LI    V  +  + WK+  EMV+    P  V   T +  +   L    A  + 
Sbjct: 122 DTSTYMALIRCLEVVEQYGEMWKMIQEMVR---NPICVVTPTELSEVVRML--GNAKMVS 176

Query: 211 EDIMRVYNVK-----PDGQVFASLIKGLCAVGELSLALGVKEEMVRD-KIEMDAGIYSSL 264
           + I   Y +K     P  Q + S+I  L   G+      +  EM  +     D   YS+L
Sbjct: 177 KAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSAL 236

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           ISA  K GR++    +L EMKE G +P +  Y  LI+ F K +D   A ++ +EM  + C
Sbjct: 237 ISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYC 296

Query: 325 KANPISYNVILGGLCKDGK 343
           + +  +Y  ++ GL K G+
Sbjct: 297 RPDVFTYTELIRGLGKAGR 315



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 2/128 (1%)

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI-EMDAGIYSSLISALFKAGRKNE 276
           N + D   + +LI+ L  V +      + +EMVR+ I  +     S ++  L  A   ++
Sbjct: 118 NYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSK 177

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG-CKANPISYNVIL 335
             AI  ++K R C+P +  YN++I     E  +     + +EM  +G C  + ++Y+ ++
Sbjct: 178 AIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALI 237

Query: 336 GGLCKDGK 343
              CK G+
Sbjct: 238 SAFCKLGR 245


>gi|255660920|gb|ACU25629.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
          Length = 484

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 164/321 (51%), Gaps = 15/321 (4%)

Query: 35  TEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVPKEII 85
           T  H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +   E +
Sbjct: 24  TSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDM 82

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIM 144
           +  +I  YG+  +++ ++++F +M    V+ T+K ++ L    L  G+    K  F +++
Sbjct: 83  WVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRFMMAKRYFNKML 142

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
            + + P    +N++I G  +S ++E A + F++M  R + P ++T+ T+I G     ++D
Sbjct: 143 SEGIEPTRHXFNVMIWGFFLSGKVETANRFFEDMKSREISPDVITYNTMINGYYRVKKMD 202

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  YS+L
Sbjct: 203 EAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTL 261

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           +  L  A + +E  +ILKEM ++   P  NS+ +  LIS  CK  + +AA  +L  M   
Sbjct: 262 LPGLCNAEKMSEARSILKEMVDKYMAPTDNSI-FXRLISSQCKTGNLDAAADVLKAMIRL 320

Query: 323 GCKANPISYNVILGGLCKDGK 343
                   Y V++   CK G+
Sbjct: 321 SVPTEAGHYGVLIENFCKAGQ 341



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 129/263 (49%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F++M S  +   V  +NT++N      K+D  ++ F  M+ + 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDMKSREISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGRN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   +++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + ++++  Y    D  +F  LI   C  G L  A  V + M+R  +  +AG Y  LI  
Sbjct: 276 SILKEMVDKYMAPTDNSIFXRLISSQCKTGNLDAAADVLKAMIRLSVPTEAGHYGVLIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             KAG+ ++   +L ++ E+    +P S        YN +I   C       A  ++ ++
Sbjct: 336 FCKAGQHDKAVKLLDKLIEKDIILRPQSTLHMEPSAYNPMIEYLCNNGQTAKAEALVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +P + N ++ G  ++G
Sbjct: 396 LKLGVQ-DPTALNTLIRGHSQEG 417



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 125/285 (43%), Gaps = 45/285 (15%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  I +  +I  Y R + ++ A + F EM   N++ TV  + TL+   ++  ++D   
Sbjct: 181 ISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT-FGTLIYG 196
            L + M+ Y + P+A +Y+ L+ G   + ++ +A  +  EMV + + PT  + F  LI  
Sbjct: 241 RLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYMAPTDNSIFXRLISS 300

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI-- 254
            C    +D A  + + ++R+ +V  +   +  LI+  C  G+   A+ + ++++   I  
Sbjct: 301 QCKTGNLDAAADVLKAMIRL-SVPTEAGHYGVLIENFCKAGQHDKAVKLLDKLIEKDIIL 359

Query: 255 ------EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK-----------------P 291
                  M+   Y+ +I  L   G+  +  A+++++ + G +                 P
Sbjct: 360 RPQSTLHMEPSAYNPMIEYLCNNGQTAKAEALVRQLLKLGVQDPTALNTLIRGHSQEGSP 419

Query: 292 NSV-----------------TYNALISGFCKEEDFEAAFTILDEM 319
           +S                   Y++L+  + K+ +   A   LD M
Sbjct: 420 DSAFELLKIMLRRKVDSEKSAYDSLVQSYLKKNEPADAKAALDSM 464


>gi|159465707|ref|XP_001691064.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
 gi|158279750|gb|EDP05510.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
          Length = 630

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 131/267 (49%), Gaps = 12/267 (4%)

Query: 86  FCNVIGFYGRARL------LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
            C+V  +     L      ++RA+++ +EM   N++  V  F  L+N  + CGKL    E
Sbjct: 65  LCDVYSYTATISLCIYSQDVDRAMELMNEMRQRNIERNVHTFTALMNVCIKCGKLPLALE 124

Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG-- 196
           ++  M      P+  +YN L+       R E A  V D M +  ++P L T+ TLI    
Sbjct: 125 IYNNMRAANCMPNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACN 184

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
           +C + R  EAL + + ++      P+   + +LI       +L  AL V +EM+R  +E 
Sbjct: 185 MCNQPR--EALAVYQRLLS-DGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMER 241

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
               YSSLISA  KAG+      I  EM++  C PN+VTYN+L++   +   +E A  + 
Sbjct: 242 SVITYSSLISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVF 301

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
           ++M   GC  + ++Y  ++    + G+
Sbjct: 302 EQMTAHGCTPDVVTYTALISAYERGGQ 328



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 164/334 (49%), Gaps = 10/334 (2%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L RL KD + A++LF   +   +  E  PL+    ++  Y   I+    ++  D   +++
Sbjct: 37  LSRLGKDRR-AMELF---DWLRSANERSPLRQL-CDVYSYTATISLCIYSQDVDRAMELM 91

Query: 71  HQLKHDTRIVPKEI-IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL 129
           ++++   R + + +  F  ++    +   L  AL++++ M + N    V  +NTL++   
Sbjct: 92  NEMRQ--RNIERNVHTFTALMNVCIKCGKLPLALEIYNNMRAANCMPNVVTYNTLVDVYG 149

Query: 130 TCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
             G+ +R   +  +M ++ V P   +YN LI  C +  +  +A  V+  ++     P   
Sbjct: 150 KLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGYTPNST 209

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           T+  LI      +++ +AL++ ++++R  N++     ++SLI      G+   AL +  E
Sbjct: 210 TYNALISAYGKTMQLGKALEVYQEMLR-QNMERSVITYSSLISACEKAGQWETALRIFNE 268

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           M +D    +   Y+SL++A  + G+  +   + ++M   GC P+ VTY ALIS + +   
Sbjct: 269 MQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVTYTALISAYERGGQ 328

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++ A     +M  +GCK + I YN I+  L + G
Sbjct: 329 WQKALQAFGKMCMQGCKPDAIVYNAIIDTLWETG 362


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 143/289 (49%), Gaps = 3/289 (1%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R N++ Y+ ++T L     + +   +L  +    RI P  I F  +I  + +   L  A 
Sbjct: 220 RPNVVTYNALVTGLCEIGRWGDAAWLLRDMM-KRRIEPNVITFTALIDAFVKVGKLMEAK 278

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
           ++++ M   +V   V  + +L+N     G LD  +++F +ME+    P+   Y  LIHG 
Sbjct: 279 ELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGF 338

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             S+R+ED  K+F EM ++ +    +T+  LI G CL  R D A ++    M      PD
Sbjct: 339 CKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQ-MSSRRAPPD 397

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
            + +  L+ GLC  G++  AL + E M + +++++   Y+ +I  + K G+  +   +  
Sbjct: 398 IRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFC 457

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
            +  +G KPN +TY  +ISGFC+      A ++  +M + G   N   Y
Sbjct: 458 SLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 135/267 (50%), Gaps = 8/267 (2%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F +++  Y     +E A+ +FD++     +  V  + TL+        L+   EL
Sbjct: 151 PDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVEL 210

Query: 141 FQIMEKYVS-PDACSYNILIHG-CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           F  M    S P+  +YN L+ G C + R  + AW + D M+KRR++P ++TF  LI    
Sbjct: 211 FNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRD-MMKRRIEPNVITFTALIDAF- 268

Query: 199 LELRVDEALKLKE--DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
             ++V + ++ KE  ++M   +V PD   + SLI GLC  G L  A  +   M R+    
Sbjct: 269 --VKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYP 326

Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
           +  IY++LI    K+ R  +   I  EM ++G   N++TY  LI G+C     + A  + 
Sbjct: 327 NEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVF 386

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
           ++M  +    +  +YNV+L GLC +GK
Sbjct: 387 NQMSSRRAPPDIRTYNVLLDGLCCNGK 413



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 144/306 (47%), Gaps = 13/306 (4%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---RIVPKEIIFCNV--IGFYGRAR 97
           F+ N++ Y  +I  L + +  +   ++ +Q+  +     +V    +   +  IG +G A 
Sbjct: 184 FKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAA 243

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYN 156
            L R      +M    ++  V  F  L++  +  GKL   KEL+ +M +  V PD  +Y 
Sbjct: 244 WLLR------DMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYG 297

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            LI+G  +   L++A ++F  M +    P  V + TLI+G C   RV++ +K+  + M  
Sbjct: 298 SLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYE-MSQ 356

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             V  +   +  LI+G C VG   +A  V  +M   +   D   Y+ L+  L   G+  +
Sbjct: 357 KGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEK 416

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              I + M++R    N VTY  +I G CK    E AF +   +  KG K N I+Y  ++ 
Sbjct: 417 ALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMIS 476

Query: 337 GLCKDG 342
           G C+ G
Sbjct: 477 GFCRRG 482



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 127/264 (48%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  +I    + R L  A+++F++M +   +  V  +N L+      G+      L
Sbjct: 186 PNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWL 245

Query: 141 FQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
            + +M++ + P+  ++  LI   V   +L +A ++++ M++  + P + T+G+LI GLC+
Sbjct: 246 LRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCM 305

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
              +DEA ++   +M      P+  ++ +LI G C    +   + +  EM +  +  +  
Sbjct: 306 YGLLDEARQMFY-LMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTI 364

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y+ LI      GR +    +  +M  R   P+  TYN L+ G C     E A  I + M
Sbjct: 365 TYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYM 424

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             +    N ++Y +I+ G+CK GK
Sbjct: 425 RKREMDINIVTYTIIIQGMCKLGK 448



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 119/242 (49%), Gaps = 2/242 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIH 160
           AL +F  M       ++  F  LL+      + D +  LF+ M+   + P  C+ NI++H
Sbjct: 67  ALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMH 126

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
              +S +   A     +M+K   +P LVTF +L+ G C   R+++A+ L + I+ +   K
Sbjct: 127 CVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGM-GFK 185

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   + +LI+ LC    L+ A+ +  +M  +    +   Y++L++ L + GR  +   +
Sbjct: 186 PNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWL 245

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L++M +R  +PN +T+ ALI  F K      A  + + M       +  +Y  ++ GLC 
Sbjct: 246 LRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCM 305

Query: 341 DG 342
            G
Sbjct: 306 YG 307


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 168/386 (43%), Gaps = 61/386 (15%)

Query: 3   TSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKM 62
           T ++  A L R++ DP  AL LF+             L P R +L+ +  ++  L RA+ 
Sbjct: 69  TPALLQAALRRVRLDPDAALHLFR-------------LAPSRPSLVSHAQLLHILARARR 115

Query: 63  FDEMQQILHQLK-HDTRIVP------KEIIFCNV-----IGFYGRARLLERALQMFDEMS 110
           F + + +L  L  H   + P      ++  F  V     +  +  A  L  AL +FD M 
Sbjct: 116 FHDARALLSSLPPHAEPLFPHLAEVYRDFTFSAVSFDLLLRAHADAGQLSSALNVFDGMG 175

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL- 168
               + +++  N LLN  +  G       ++ Q+    V PD  +  I+        R+ 
Sbjct: 176 KVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVA 235

Query: 169 ----------------------------------EDAWKVFDEMVKRRLQPTLVTFGTLI 194
                                             EDA ++ + + ++ L P +VT+  L+
Sbjct: 236 QAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLV 295

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
            G C + R++EA ++ +++    ++  D   +  +I G C  G +  A  V+ EM    I
Sbjct: 296 KGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGI 355

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
            ++  +Y+++I+ L K GR  E   +L+EM++ G +P+  +YN LI G+C+E     AF 
Sbjct: 356 HVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFE 415

Query: 315 ILDEMGDKGCKANPISYNVILGGLCK 340
           +   M   G  A  ++YN +L G C 
Sbjct: 416 MCRMMVRNGLAATTLTYNTLLKGFCS 441



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 157/334 (47%), Gaps = 37/334 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y L++    +    +E ++++ ++K    IV  E+ +  +I  Y +   ++ A ++
Sbjct: 287 NVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRV 346

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
            +EM    + + +  +NT++N     G+++ ++++ Q ME   + PD  SYN LI G   
Sbjct: 347 RNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCR 406

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +  A+++   MV+  L  T +T+ TL+ G C    +D+AL+L   +M    V P+  
Sbjct: 407 EGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWF-LMLKRGVAPNEI 465

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
             ++L+ GL   G+   AL + +E +   +  +   ++++I+ L K GR  E   +L  M
Sbjct: 466 SCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRM 525

Query: 285 KERGCKPNSVTYNALISGFCK----------------------EEDFEAAFT-------- 314
           KE  C P+S+TY  L  G+CK                       E F +  T        
Sbjct: 526 KELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQW 585

Query: 315 -----ILDEMGDKGCKANPISYNVILGGLCKDGK 343
                I  EM  +G   N ++Y  ++ G CK+G 
Sbjct: 586 HKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGN 619



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 2/226 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNI 157
           +++   + D ++  N       +N ++      G++   K LF+ +  K   PD  +Y+ 
Sbjct: 681 IDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSS 740

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LIHGC  S  +++A+ + D M+   L P ++T+ +LIYGLC   ++  A+ L    ++  
Sbjct: 741 LIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNK-LQSK 799

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + P+G  + +LI   C  G+ + A  +K++MV + I+     YS LI  L   G   E 
Sbjct: 800 GISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEA 859

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
             +L +M E    PN +TY  LI G+ K  + E    + DEM  +G
Sbjct: 860 IKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRG 905



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 1/189 (0%)

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           +N++I G   S R+ DA  +F+ +  +R  P   T+ +LI+G      +DEA  L+ D+M
Sbjct: 703 WNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLR-DVM 761

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
               + P+   + SLI GLC  G+LS A+ +  ++    I  +   Y++LI    K G+ 
Sbjct: 762 LSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKT 821

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            E   + ++M E G +P  +TY+ LI G C +   E A  +LD+M +     N I+Y  +
Sbjct: 822 TEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTL 881

Query: 335 LGGLCKDGK 343
           + G  K G 
Sbjct: 882 IHGYIKSGN 890



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 142/324 (43%), Gaps = 27/324 (8%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ ++ +I  L +     E +++L ++K + R  P  + +  +   Y +   L  A  +
Sbjct: 498 NVITFNTVINGLCKIGRMAEAEELLDRMK-ELRCPPDSLTYRTLFDGYCKLGQLGTATHL 556

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            ++M       +V+ FN+ +       +  ++ ++   M  + +SP+  +Y  LI G   
Sbjct: 557 MNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCK 616

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA-LKLK------------- 210
              L +A  ++ EMV   + P +     L+     E +VDEA L L+             
Sbjct: 617 EGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSI 676

Query: 211 -----EDIMRVYNVKPDGQ------VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
                + I  V +   DG       ++  +I GLC  G ++ A  + E +   +   D  
Sbjct: 677 STIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNF 736

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YSSLI     +G  +E  ++   M   G  PN +TYN+LI G CK      A  + +++
Sbjct: 737 TYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKL 796

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             KG   N I+YN ++   CK+GK
Sbjct: 797 QSKGISPNGITYNTLIDEYCKEGK 820



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 139/294 (47%), Gaps = 12/294 (4%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           ++  IT    AK + ++  I H       + P  + +  +I  + +   L  A  ++ EM
Sbjct: 572 FNSFITGHFIAKQWHKVNDI-HSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEM 630

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSR-RL 168
            +  +   V   + L++     GK+D   E   +++K V+ D      +I GC +S   +
Sbjct: 631 VNNGMNPNVFICSALMSCFYKEGKVD---EANLVLQKLVNID------MIPGCSISTIEI 681

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           +    V D +         V +  +I+GLC   R+ +A  L E  +R     PD   ++S
Sbjct: 682 DKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFES-LRNKRFLPDNFTYSS 740

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G  A G +  A  +++ M+   +  +   Y+SLI  L K+G+ +    +  +++ +G
Sbjct: 741 LIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKG 800

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             PN +TYN LI  +CKE     AF +  +M ++G +   I+Y++++ GLC  G
Sbjct: 801 ISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQG 854



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 2/194 (1%)

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
            A S+++L+     + +L  A  VFD M K   +P+L +   L+  L        A  + 
Sbjct: 147 SAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVY 206

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
              MR+  V PD    A + K  C  G ++ A+   EEM    +E++   Y +++     
Sbjct: 207 GQ-MRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCG 265

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG-CKANPI 329
            G   +   IL+ ++ +G  PN VTY  L+ G+CK+   E A  ++ EM + G    + +
Sbjct: 266 MGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEV 325

Query: 330 SYNVILGGLCKDGK 343
           +Y +++ G C+ G+
Sbjct: 326 AYGMMINGYCQRGR 339


>gi|297832366|ref|XP_002884065.1| hypothetical protein ARALYDRAFT_343373 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329905|gb|EFH60324.1| hypothetical protein ARALYDRAFT_343373 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1056

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 155/330 (46%), Gaps = 17/330 (5%)

Query: 15  QKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 74
           QK    AL+ F+  +  P          F ++   Y  +  KL   + FD + Q+L ++ 
Sbjct: 41  QKSASGALETFRWASTFPG---------FIHSRSTYRALFYKLCVFRRFDTVYQLLDEMP 91

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
             T + P + IF  +I  +GRARL +R + + D +S F ++ ++K FN++L+  L    +
Sbjct: 92  ESTGLPPDDAIFVTIIRGFGRARLTKRVISVVDLVSKFGIKPSLKVFNSILDV-LVKEDI 150

Query: 135 DRMKELF--QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
           D  +E F  ++M   +  D  +Y IL+ G  ++ R+ D +K+   M    + P  V + T
Sbjct: 151 DIAREFFRRKMMASGIQGDEYTYGILMKGLCLTNRIGDGFKLLQIMKTCGVAPNTVVYNT 210

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           L++ LC   +V  A  L  ++      +P+   F  LI   C   +L  ++ + E+    
Sbjct: 211 LLHALCKNGKVGRARSLMSEMK-----EPNDVTFNILISAYCNEQKLIQSMVLLEKCFSL 265

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
            +  D    + ++  L   GR +E   +L+ ++ +G K + V  N L+ G+C       A
Sbjct: 266 GLVPDVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCAVGKMRVA 325

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDG 342
                EM  KG   N  +YN+++ G C  G
Sbjct: 326 QRFFQEMERKGYLPNVETYNLLIAGFCDVG 355



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 128/301 (42%), Gaps = 39/301 (12%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           +VP  +    V+        +  AL++ + + S   ++ V   NTL+      GK+   +
Sbjct: 267 LVPDVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCAVGKMRVAQ 326

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
             FQ ME K   P+  +YN+LI G      L+ A   F++M    ++    TF TLI GL
Sbjct: 327 RFFQEMERKGYLPNVETYNLLIAGFCDVGMLDSALDTFNDMKTDAIRWNFATFNTLIRGL 386

Query: 198 CLELRVDEALK---LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR--- 251
            +  R D+ +K   L +D   V+  + D   + S+I G         AL    +M +   
Sbjct: 387 SVRGRTDDGIKILELMQDSETVHGARIDP--YNSVIYGFYKENRWEDALEFLLKMEKLFP 444

Query: 252 -------------------------DKIEMDAGIYSSLISALF-----KAGRKNEFPAIL 281
                                    D++  + G+ S ++S        + G   E   ++
Sbjct: 445 RAVDRSFKLISLCEKGGMDDVKTAYDQMTGEGGVPSVIVSHCLIHRYSQEGYMEETLELI 504

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            +M  RG  P S T+NA+I GFCKE+        +++M ++GC  +  SYN +L  LC  
Sbjct: 505 NDMVTRGYLPRSSTFNAVIIGFCKEDKVMNGIKFVEDMAERGCVPDRESYNPLLEELCVK 564

Query: 342 G 342
           G
Sbjct: 565 G 565



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 145/379 (38%), Gaps = 73/379 (19%)

Query: 10  CLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYN-LLHYDLIITKLGRAK-MFDEMQ 67
           CL     D    LQ+ K     PN           YN LLH      K+GRA+ +  EM+
Sbjct: 181 CLTNRIGDGFKLLQIMKTCGVAPNTVV--------YNTLLHALCKNGKVGRARSLMSEMK 232

Query: 68  QILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF----NVQMTVKFFNT 123
           +            P ++ F  +I  Y   + L +++ + ++  S     +V    K    
Sbjct: 233 E------------PNDVTFNILISAYCNEQKLIQSMVLLEKCFSLGLVPDVVTVTKVMEV 280

Query: 124 LLNPKLTCGKLDRMKELFQIMEKYVSP----DACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           L N         R+ E  +++E+  S     D  + N L+ G     ++  A + F EM 
Sbjct: 281 LCNE-------GRVSEALEVLERVESKGGKVDVVACNTLVKGYCAVGKMRVAQRFFQEME 333

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           ++   P + T+  LI G C    +D AL    D M+   ++ +   F +LI+GL   G  
Sbjct: 334 RKGYLPNVETYNLLIAGFCDVGMLDSALDTFND-MKTDAIRWNFATFNTLIRGLSVRGRT 392

Query: 240 SLALGVKEEMVRDKIEMDAGI--YSSLISALFKAGRKNE-----------FPAIL----- 281
              + + E M   +    A I  Y+S+I   +K  R  +           FP  +     
Sbjct: 393 DDGIKILELMQDSETVHGARIDPYNSVIYGFYKENRWEDALEFLLKMEKLFPRAVDRSFK 452

Query: 282 -----------------KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
                             +M   G  P+ +  + LI  + +E   E    ++++M  +G 
Sbjct: 453 LISLCEKGGMDDVKTAYDQMTGEGGVPSVIVSHCLIHRYSQEGYMEETLELINDMVTRGY 512

Query: 325 KANPISYNVILGGLCKDGK 343
                ++N ++ G CK+ K
Sbjct: 513 LPRSSTFNAVIIGFCKEDK 531



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 103/240 (42%), Gaps = 13/240 (5%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQ 142
           FC+V        +L+ AL  F++M +  ++     FNTL+      G+ D   ++ EL Q
Sbjct: 351 FCDV-------GMLDSALDTFNDMKTDAIRWNFATFNTLIRGLSVRGRTDDGIKILELMQ 403

Query: 143 IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR 202
             E         YN +I+G     R EDA +   +M K  L P  V     +  LC +  
Sbjct: 404 DSETVHGARIDPYNSVIYGFYKENRWEDALEFLLKMEK--LFPRAVDRSFKLISLCEKGG 461

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
           +D+ +K   D M      P   V   LI      G +   L +  +MV       +  ++
Sbjct: 462 MDD-VKTAYDQMTGEGGVPSVIVSHCLIHRYSQEGYMEETLELINDMVTRGYLPRSSTFN 520

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           ++I    K  +       +++M ERGC P+  +YN L+   C + D + A+ +L  M +K
Sbjct: 521 AVIIGFCKEDKVMNGIKFVEDMAERGCVPDRESYNPLLEELCVKGDIQKAWLLLSLMVEK 580



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 68/155 (43%)

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           T+  L Y LC+  R D   +L +++     + PD  +F ++I+G          + V + 
Sbjct: 66  TYRALFYKLCVFRRFDTVYQLLDEMPESTGLPPDDAIFVTIIRGFGRARLTKRVISVVDL 125

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           + +  I+    +++S++  L K           ++M   G + +  TY  L+ G C    
Sbjct: 126 VSKFGIKPSLKVFNSILDVLVKEDIDIAREFFRRKMMASGIQGDEYTYGILMKGLCLTNR 185

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               F +L  M   G   N + YN +L  LCK+GK
Sbjct: 186 IGDGFKLLQIMKTCGVAPNTVVYNTLLHALCKNGK 220



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 102/232 (43%), Gaps = 15/232 (6%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLK-----HDTRIVPKEIIFCNVIGFYGRARL 98
           R+N   ++ +I  L      D+  +IL  ++     H  RI P   +   + GFY   R 
Sbjct: 373 RWNFATFNTLIRGLSVRGRTDDGIKILELMQDSETVHGARIDPYNSV---IYGFYKENRW 429

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTL-LNPKLTCGKLDRMKELF-QIMEKYVSPDACSYN 156
            E AL+   +M     +   + F  + L  K   G +D +K  + Q+  +   P     +
Sbjct: 430 -EDALEFLLKMEKLFPRAVDRSFKLISLCEK---GGMDDVKTAYDQMTGEGGVPSVIVSH 485

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            LIH       +E+  ++ ++MV R   P   TF  +I G C E +V   +K  ED M  
Sbjct: 486 CLIHRYSQEGYMEETLELINDMVTRGYLPRSSTFNAVIIGFCKEDKVMNGIKFVED-MAE 544

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
               PD + +  L++ LC  G++  A  +   MV   I  D+ ++SSL+  L
Sbjct: 545 RGCVPDRESYNPLLEELCVKGDIQKAWLLLSLMVEKSIVPDSSMWSSLMFCL 596


>gi|255660892|gb|ACU25615.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 481

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 164/325 (50%), Gaps = 15/325 (4%)

Query: 31  NPNDTEAHPLKPF----RYNLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVP 81
           + + T  H L+ F    R NL  ++      II  LGRA   +  + IL  +     +  
Sbjct: 20  HSSKTSEHALQFFXWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEW 78

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
            E ++  +I  YG+  +++ +++MF +M    V+ T+K +N L    L  G+    K  F
Sbjct: 79  DEDMWVMMIDSYGKQGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYF 138

Query: 142 -QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
            +++ + + P   ++N++I G  +S ++E A + F++M  R + P +VT+ T+I G    
Sbjct: 139 NKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRV 198

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            +++EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  
Sbjct: 199 KKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAIT 257

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDE 318
           YS+L+  L  A + +E    LKEM ++   P  NS+ +  LIS  CK  + +AA  +L  
Sbjct: 258 YSTLLPGLCNAEKMSEARVXLKEMMDKYLAPTDNSI-FMRLISSHCKSGNLDAAADVLKA 316

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M           Y V++   CK G+
Sbjct: 317 MXRLSVPTEAGHYGVLIENFCKXGQ 341



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 127/263 (48%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F++M S  +   V  +NT++N      K++  ++ F  M+ + 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   +++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
              +++M  Y    D  +F  LI   C  G L  A  V + M R  +  +AG Y  LI  
Sbjct: 276 VXLKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMXRLSVPTEAGHYGVLIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             K G+ ++   +L ++ E+    +P S        YN +I   C       A T++ ++
Sbjct: 336 FCKXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQAAKAETLVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +P + N ++ G  ++G
Sbjct: 396 LKLGVQ-DPTALNTLIRGHSQEG 417



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 134/300 (44%), Gaps = 24/300 (8%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D ++  + P   +++ Y+ +I    R K  +E ++   ++K    I P  + +  +I  Y
Sbjct: 175 DMKSREISP---DVVTYNTMINGYYRVKKMEEAEKYFVEMK-GRNIEPTVVTYTTLIKGY 230

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK-ELFQIMEKYVSP-D 151
                ++ AL++ +EM  F ++     ++TLL       K+   +  L ++M+KY++P D
Sbjct: 231 VSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVXLKEMMDKYLAPTD 290

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-- 209
              +  LI     S  L+ A  V   M +  +      +G LI   C   + D+A+KL  
Sbjct: 291 NSIFMRLISSHCKSGNLDAAADVLKAMXRLSVPTEAGHYGVLIENFCKXGQYDKAVKLLD 350

Query: 210 ----KEDIMR---VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM---DAG 259
               K+ I+R     +++P    +  +I+ LC  G+ + A    E +VR  +++   D  
Sbjct: 351 KLIEKDIILRPQSTLHLEPSA--YNPMIEYLCNNGQAAKA----ETLVRQLLKLGVQDPT 404

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             ++LI    + G  +    +LK M  R        YN+L+  + K+ +   A   LD M
Sbjct: 405 ALNTLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSXYNSLVQSYLKKNEPXDAKAALDSM 464


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 152/313 (48%), Gaps = 24/313 (7%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHD-TRIVPKEIIFCNVI--GFYGR------- 95
           ++  Y+ ++  L       E  ++LH +  D     P +++  N +  GF+         
Sbjct: 162 DVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLT 221

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLN-------PKLTCGKLDRMKELFQIMEKYV 148
           A+ +++A+++ + M    V      +N++L+       PK   G L +M+         V
Sbjct: 222 AQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRS------DGV 275

Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
            P+  +Y+ L++    + R  +A K+FD M KR L+P + T+ TL+ G C E RV E+ K
Sbjct: 276 EPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEK 335

Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
           L + ++R+  VKPD   + +LI G C  G++  A  +   MV   ++ D   Y +LI+  
Sbjct: 336 LFDLMVRI-GVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGY 394

Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
            +  R ++  A+ KEM   G  PN +TYN ++ G        AA  +   +   G +   
Sbjct: 395 CRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLEL 454

Query: 329 ISYNVILGGLCKD 341
            +YN+IL GLCK+
Sbjct: 455 STYNIILHGLCKN 467



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 146/292 (50%), Gaps = 4/292 (1%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           I TKL  A+  D+  ++L+ +  +  ++P  + + +++  Y  +   + A+    +M S 
Sbjct: 216 IQTKL-TAQAMDKAMEVLNTMVKNG-VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSD 273

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDA 171
            V+  V  +++L+N     G+    +++F  M K  + PD  +Y  L+ G     R+ ++
Sbjct: 274 GVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIES 333

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIK 231
            K+FD MV+  ++P ++T+ TLI G CL  ++DEA KL   ++ V  VKPD   + +LI 
Sbjct: 334 EKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSV-GVKPDIVTYGTLIN 392

Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
           G C V  +  AL + +EMV   +  +   Y+ ++  LF   R      +   + + G + 
Sbjct: 393 GYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQL 452

Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              TYN ++ G CK    + A  +   +     +    ++N+++G L K G+
Sbjct: 453 ELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGR 504



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 105/220 (47%), Gaps = 16/220 (7%)

Query: 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR---LQPTLVTF 190
           L RM EL  I      PD  SYN L+ G     R ++A ++   M   R     P +V++
Sbjct: 151 LRRMTELGCI------PDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 204

Query: 191 GTLIYGLCLE-LRVDEALKLKEDIMRVYN------VKPDGQVFASLIKGLCAVGELSLAL 243
            T++ G   E ++     +  +  M V N      V PD   + S++ G C+ G+   A+
Sbjct: 205 NTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAI 264

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
           G  ++M  D +E +   YSSL++ L K GR  E   I   M +RG +P+  TY  L+ G 
Sbjct: 265 GTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGH 324

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           CKE     +  + D M   G K + I+YN ++ G C  GK
Sbjct: 325 CKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGK 364



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 140/308 (45%), Gaps = 36/308 (11%)

Query: 70  LHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL 129
           L +++ D  + P  + + +++ +  +      A ++FD M+   ++  +  + TLL    
Sbjct: 267 LKKMRSDG-VEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHC 325

Query: 130 TCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
             G++   ++LF +M +  V PD  +YN LI GC ++ ++++A K+   MV   ++P +V
Sbjct: 326 KEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIV 385

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMR--------VYNVKPDG-----------QVFASL 229
           T+GTLI G C   R+D+AL L ++++          YN+   G           +++ S+
Sbjct: 386 TYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSI 445

Query: 230 IK---------------GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
            K               GLC       AL + + +    ++++   ++ +I AL K GR 
Sbjct: 446 TKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRM 505

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +E   +       G  P+  TY+ +     ++   E    +   M + GC A+    N I
Sbjct: 506 DEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSI 565

Query: 335 LGGLCKDG 342
           +  L + G
Sbjct: 566 VRKLLQRG 573



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 118/261 (45%), Gaps = 20/261 (7%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLL------NPKLTCGKLDRMKELFQIMEKYVSPDAC 153
           E A  +FDE+       ++   N  L      +P     + +RM    +     V+P   
Sbjct: 37  EDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMA---RAGAGKVTPTVH 93

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +Y ILI  C  + RL+  +     +VK+  +   +TF  L+ GLC + R  +A+ +    
Sbjct: 94  TYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRR 153

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK---IEMDAGIYSSLISALFK 270
           M      PD   + +L+KGLC       AL +   M  D+      D   Y+++++  FK
Sbjct: 154 MTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFK 213

Query: 271 AGRKNEFPA--------ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
            G + +  A        +L  M + G  P+ +TYN+++ G+C     + A   L +M   
Sbjct: 214 EGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSD 273

Query: 323 GCKANPISYNVILGGLCKDGK 343
           G + N ++Y+ ++  LCK+G+
Sbjct: 274 GVEPNVVTYSSLMNYLCKNGR 294



 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 68/137 (49%), Gaps = 8/137 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYG--RARLLERA 102
           N++ Y++I+  L   +     +++   + K  T++   E+   N+I  +G  +  L + A
Sbjct: 418 NIITYNIILQGLFHTRRTAAAKELYVSITKSGTQL---ELSTYNII-LHGLCKNNLTDEA 473

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
           L+MF  +   ++Q+  + FN ++   L CG++D  K+LF       + PD  +Y+++   
Sbjct: 474 LRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAEN 533

Query: 162 CVVSRRLEDAWKVFDEM 178
            +    LE+   +F  M
Sbjct: 534 LIEQGSLEELDDLFLSM 550


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 116/224 (51%), Gaps = 2/224 (0%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +  LL       + +  + +F+ M  +  SP+  SY+ILI G    +++++A ++ +EM+
Sbjct: 55  YGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMI 114

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
               QP +VT+G+L+ GLC   ++ EA+ L    M      PDG V+  LI G    G++
Sbjct: 115 DGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSR-MVYRGCPPDGVVYNVLIDGFSKKGDM 173

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A  + EEM+          Y+SL+S   + G      ++ K+M  +GC PN  T+N L
Sbjct: 174 GEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNL 233

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + GFCK  D   A  +  EM   GC  + +SYN ++ G+C  GK
Sbjct: 234 LDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGK 277



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 149/312 (47%), Gaps = 6/312 (1%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           ND  A    P  Y    Y  ++  L +A+ F+E + +   +       P    +  +I  
Sbjct: 41  NDMLAAGCVPNTYT---YGYLLRSLCQAQRFEEARSVFRGMAAQG-CSPNVFSYSILIAG 96

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPD 151
             R + ++ A ++ +EM     Q  V  + +LL+     GKL    +LF +++ +   PD
Sbjct: 97  LCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPD 156

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
              YN+LI G      + +A+++F+EM+++   PT+ T+ +L+ G   +        L +
Sbjct: 157 GVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFK 216

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           D++R   V P+   F +L+ G C +G++  A  +  EM       D   Y++LI  +   
Sbjct: 217 DMLRQGCV-PNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSK 275

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G+ +E   +L+EM   G  P+ V+YN LI G+ K    + A  +  E+   G + +  SY
Sbjct: 276 GKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSY 335

Query: 332 NVILGGLCKDGK 343
           + I+  LC+ GK
Sbjct: 336 STIIDCLCRAGK 347



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 92/190 (48%), Gaps = 1/190 (0%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           SYN L+     S R +  +  +++M+     P   T+G L+  LC   R +EA  +    
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG- 77

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M      P+   ++ LI GLC   ++  A  +  EM+    + +   Y SL+S L K G+
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   +   M  RGC P+ V YN LI GF K+ D   A+ + +EM +KGC     +YN 
Sbjct: 138 LKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNS 197

Query: 334 ILGGLCKDGK 343
           +L G  + G+
Sbjct: 198 LLSGFSRKGE 207



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 135/296 (45%), Gaps = 3/296 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y ++I  L R +  DE  ++L+++  D    P  + + +++    +   L+ A+ +
Sbjct: 86  NVFSYSILIAGLCRGQKVDEAAELLNEMI-DGGHQPNVVTYGSLLSGLCKMGKLKEAVDL 144

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           F  M           +N L++     G +     LF+ ++EK   P   +YN L+ G   
Sbjct: 145 FSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSR 204

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
                    +F +M+++   P + TF  L+ G C    + EA +L  + MR     PD  
Sbjct: 205 KGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLE-MRSLGCPPDVV 263

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI+G+C+ G+   A  +  EM+R  +  D   Y+ LI    K+G  +    +  E+
Sbjct: 264 SYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEI 323

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            + G +P++ +Y+ +I   C+     AAF +  +M   G   +      ++ GLC+
Sbjct: 324 PKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCR 379



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 121/275 (44%), Gaps = 3/275 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+++I    +     E  ++  ++  +   +P    + +++  + R     R   +F +M
Sbjct: 160 YNVLIDGFSKKGDMGEAYRLFEEML-EKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDM 218

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
                   +  FN LL+     G +     LF  M      PD  SYN LI G     + 
Sbjct: 219 LRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKP 278

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A ++  EM++  + P +V++  LI G      +D A+KL  +I +   ++PD   +++
Sbjct: 279 HEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKS-GLEPDAFSYST 337

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I  LC  G++  A  V ++M+ +    DA +   L+  L +  R  E   + + M +  
Sbjct: 338 IIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFE 397

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           C P    YN L+   CK +  +    I  E+ ++G
Sbjct: 398 CVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERG 432


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 153/301 (50%), Gaps = 7/301 (2%)

Query: 46  NLLHYDLIITKL-GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNV-IGFYGRARLLERAL 103
           N   YD ++  L  R K+   MQ +  QL+  ++  P +++ C V I    +   + +A+
Sbjct: 180 NAATYDAVLCSLCDRGKLKQAMQVLGRQLQ--SKCYP-DVVTCTVLIDATCKESGVGQAM 236

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
           ++F+EM +   +  V  +N L+      G+LD      + +  Y   PD  S+N+++   
Sbjct: 237 KLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSL 296

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
               R  DA K+   M+++   P++VTF  LI  LC +  + +AL + E +M  +   P+
Sbjct: 297 CSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLE-MMPKHGHTPN 355

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
            + F  LI+G C    +  A+   E MV      D   Y+ L++AL K G+ ++   IL 
Sbjct: 356 SRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILS 415

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++  +GC P+ ++YN +I G  K    E A  +L+EM  KG K + I+   ++GGL ++G
Sbjct: 416 QLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREG 475

Query: 343 K 343
           K
Sbjct: 476 K 476



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 148/313 (47%), Gaps = 10/313 (3%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-- 90
           N+      KP   +++ Y+++I    +    DE  + L +L   +     ++I  N+I  
Sbjct: 240 NEMRNKGCKP---DVVTYNVLIKGFCKGGRLDEAIRFLKKLP--SYGCQPDVISHNMILR 294

Query: 91  GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV-S 149
                 R ++ A+++   M       +V  FN L+N     G L +   + ++M K+  +
Sbjct: 295 SLCSGGRWMD-AMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHT 353

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P++ S+N LI G    + ++ A +  + MV R   P +VT+  L+  LC + +VD+A+ +
Sbjct: 354 PNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVI 413

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
               +      P    + ++I GL  VG+  LA+ + EEM    ++ D    +S++  L 
Sbjct: 414 LSQ-LSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLS 472

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           + G+  E       +K    +PN+  YN++I+G CK +    A   L +M  KGCK    
Sbjct: 473 REGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEA 532

Query: 330 SYNVILGGLCKDG 342
           +Y  ++ G+  +G
Sbjct: 533 TYTTLIKGITYEG 545



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 135/280 (48%), Gaps = 5/280 (1%)

Query: 46  NLLHYDLIITKL-GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
           +++ +++I+  L    +  D M+ +   L+     +P  + F  +I F  +  LL +AL 
Sbjct: 285 DVISHNMILRSLCSGGRWMDAMKLLATMLRKGC--LPSVVTFNILINFLCQKGLLGKALN 342

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
           + + M         + FN L+        +DR  E  +IM  +   PD  +YNIL+    
Sbjct: 343 VLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALC 402

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
              +++DA  +  ++  +   P+L+++ T+I GL    + + A++L E+ M    +KPD 
Sbjct: 403 KDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEE-MCYKGLKPDL 461

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
               S++ GL   G++  A+     + R  I  +A IY+S+I+ L K+ + +     L +
Sbjct: 462 ITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLAD 521

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           M  +GCKP   TY  LI G   E   E A  + +E+  +G
Sbjct: 522 MVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRG 561



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 102/213 (47%), Gaps = 5/213 (2%)

Query: 132 GKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           G+L+      + M  K  SPD  +   LI       R ++A ++   + +      + ++
Sbjct: 93  GELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSY 152

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
             LI G C    ++EAL++ + +     V P+   + +++  LC  G+L  A+ V    +
Sbjct: 153 NVLISGYCKSGEIEEALRVLDRM----GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQL 208

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
           + K   D    + LI A  K     +   +  EM+ +GCKP+ VTYN LI GFCK    +
Sbjct: 209 QSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLD 268

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            A   L ++   GC+ + IS+N+IL  LC  G+
Sbjct: 269 EAIRFLKKLPSYGCQPDVISHNMILRSLCSGGR 301


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 116/224 (51%), Gaps = 2/224 (0%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +  LL       + +  + +F+ M  +  SP+  SY+ILI G    +++++A ++ +EM+
Sbjct: 55  YGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMI 114

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
               QP +VT+G+L+ GLC   ++ EA+ L    M      PDG V+  LI G    G++
Sbjct: 115 DGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSR-MVYRGCPPDGVVYNVLIDGFSKKGDM 173

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A  + EEM+          Y+SL+S   + G      ++ K+M  +GC PN  T+N L
Sbjct: 174 GEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNL 233

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + GFCK  D   A  +  EM   GC  + +SYN ++ G+C  GK
Sbjct: 234 LDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGK 277



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 145/299 (48%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N   Y  ++  L +A+ F+E + +   +       P    +  +I    R + ++ A ++
Sbjct: 51  NTYTYGYLLRSLCQAQRFEEARSVFRGMAAQG-CSPNVFSYSILIAGLCRGQKVDEAAEL 109

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            +EM     Q  V  + +LL+     GKL    +LF +++ +   PD   YN+LI G   
Sbjct: 110 LNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSK 169

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              + +A+++F+EM+++   PT+ T+ +L+ G   +        L +D++R   V P+  
Sbjct: 170 KGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCV-PNIF 228

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            F +L+ G C +G++  A  +  EM       D   Y++L+  +   G+ +E   +L+EM
Sbjct: 229 TFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREM 288

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  P+ V+YN LI G+ K    + A  +  E+   G + +  SY+ I+  LC+ GK
Sbjct: 289 IRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGK 347



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 92/190 (48%), Gaps = 1/190 (0%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           SYN L+     S R +  +  +++M+     P   T+G L+  LC   R +EA  +    
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG- 77

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M      P+   ++ LI GLC   ++  A  +  EM+    + +   Y SL+S L K G+
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   +   M  RGC P+ V YN LI GF K+ D   A+ + +EM +KGC     +YN 
Sbjct: 138 LKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNS 197

Query: 334 ILGGLCKDGK 343
           +L G  + G+
Sbjct: 198 LLSGFSRKGE 207



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 135/296 (45%), Gaps = 3/296 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y ++I  L R +  DE  ++L+++  D    P  + + +++    +   L+ A+ +
Sbjct: 86  NVFSYSILIAGLCRGQKVDEAAELLNEMI-DGGHQPNVVTYGSLLSGLCKMGKLKEAVDL 144

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           F  M           +N L++     G +     LF+ ++EK   P   +YN L+ G   
Sbjct: 145 FSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSR 204

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
                    +F +M+++   P + TF  L+ G C    + EA +L  + MR     PD  
Sbjct: 205 KGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLE-MRSLGCPPDVV 263

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +L++G+C+ G+   A  +  EM+R  +  D   Y+ LI    K+G  +    +  E+
Sbjct: 264 SYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEI 323

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            + G +P++ +Y+ +I   C+     AAF +  +M   G   +      ++ GLC+
Sbjct: 324 PKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCR 379



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 122/268 (45%), Gaps = 3/268 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            +  Y+ +++   R   F  +Q +   +      VP    F N++  + +   +  A ++
Sbjct: 191 TVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQG-CVPNIFTFNNLLDGFCKMGDMVEAHRL 249

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           F EM S      V  +NTL+    + GK    + L  +++   V PD  SYNILI G   
Sbjct: 250 FLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSK 309

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S  L+ A K+F E+ K  L+P   ++ T+I  LC   +V  A  + +D M      PD  
Sbjct: 310 SGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKD-MIANGSAPDAA 368

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           V   L+ GLC    L+ +  + + MV+ +       Y+ L+  L KA R ++   I  E+
Sbjct: 369 VVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHEL 428

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAA 312
            ERG  P+      ++    + +D EAA
Sbjct: 429 TERGFSPDVEISKVILETLRRSDDKEAA 456



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 121/275 (44%), Gaps = 3/275 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+++I    +     E  ++  ++  +   +P    + +++  + R     R   +F +M
Sbjct: 160 YNVLIDGFSKKGDMGEAYRLFEEML-EKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDM 218

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
                   +  FN LL+     G +     LF  M      PD  SYN L+ G     + 
Sbjct: 219 LRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKP 278

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A ++  EM++  + P +V++  LI G      +D A+KL  +I +   ++PD   +++
Sbjct: 279 HEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKS-GLEPDAFSYST 337

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I  LC  G++  A  V ++M+ +    DA +   L+  L +  R  E   + + M +  
Sbjct: 338 IIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFE 397

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           C P    YN L+   CK +  +    I  E+ ++G
Sbjct: 398 CVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERG 432


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 124/243 (51%), Gaps = 2/243 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIH 160
           AL +FD+      Q  V  + TL+N     G       L + M +K   P+  +YN +I 
Sbjct: 201 ALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIID 260

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                R++ +A+ +F EM+ + + P + T+ +LI+ LC          L  +++    + 
Sbjct: 261 SLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVN-SKIM 319

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+  VF++++  LC  G +++A  V + M++  +E D   Y++L+         +E   +
Sbjct: 320 PNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKV 379

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
              M  +GC PN  +YN LI+G+C+ +  + A  +L++M  +G  A+ ++YN ++ GLC 
Sbjct: 380 FDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCH 439

Query: 341 DGK 343
            G+
Sbjct: 440 VGR 442



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 122/264 (46%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  I +  +I    + R +  A  +F EM +  +   +  +N+L++      +   +  L
Sbjct: 250 PNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTL 309

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
             +++   + P+   ++ ++        +  A  V D M+KR ++P +VT+  L+ G CL
Sbjct: 310 LNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCL 369

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
              +DEA+K+  D M      P+ + +  LI G C +  +  A+G+ E+M    +  D  
Sbjct: 370 RSEMDEAVKVF-DTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTV 428

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI  L   GR     A+  EM   G  P+ VTY  L+   CK      A  +L  +
Sbjct: 429 TYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAI 488

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
                 A+ + YN+ + G+C+ G+
Sbjct: 489 EGSNLDADILVYNIAIDGMCRAGE 512



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 132/289 (45%), Gaps = 7/289 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  R N++ Y+ II  L + +   E   +  ++   T+ +  +I   N +  +    L E
Sbjct: 246 KNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMI--TKGISPDIFTYNSL-IHALCNLCE 302

Query: 101 --RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
                 + +EM +  +   V  F+T+++     G +    ++  +M ++ V PD  +Y  
Sbjct: 303 WKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTA 362

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L+ G  +   +++A KVFD MV +   P + ++  LI G C   R+D+A+ L E  M + 
Sbjct: 363 LMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQ-MSLQ 421

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            +  D   + +LI GLC VG L  A+ +  EMV      D   Y  L+  L K     E 
Sbjct: 422 GLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEA 481

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326
             +LK ++      + + YN  I G C+  + EAA  +   +  +G  A
Sbjct: 482 MVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSCQGFAA 530



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 1/206 (0%)

Query: 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           D +    +++  +  P    +  L+      +       +  +M    + P + T   LI
Sbjct: 95  DALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILI 154

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
              C   R+  A  +   ++++   +PD   F +LI+GLC  G++  AL + ++ + +  
Sbjct: 155 NSFCHLRRLGYAFSVLAKLLKL-GCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGF 213

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           + D   Y +L++ L K G  +    +L+ M ++ C+PN + YN +I   CK+     AF 
Sbjct: 214 QPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFN 273

Query: 315 ILDEMGDKGCKANPISYNVILGGLCK 340
           +  EM  KG   +  +YN ++  LC 
Sbjct: 274 LFSEMITKGISPDIFTYNSLIHALCN 299



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 1/174 (0%)

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           L+DA   F+ M+     P+ V F  L+  +         L L    M  + + PD     
Sbjct: 93  LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQ-MDSFGIPPDVYTLN 151

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            LI   C +  L  A  V  ++++   + D   +++LI  L   G+  E   +  +    
Sbjct: 152 ILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGE 211

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           G +P+ VTY  L++G CK  +  AA  +L  M  K C+ N I+YN I+  LCKD
Sbjct: 212 GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKD 265



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 57/123 (46%)

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P    F  L+  +  +   S  L +  +M    I  D    + LI++     R     ++
Sbjct: 110 PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSV 169

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L ++ + GC+P++ T+N LI G C E     A  + D+   +G + + ++Y  ++ GLCK
Sbjct: 170 LAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCK 229

Query: 341 DGK 343
            G 
Sbjct: 230 VGN 232


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 156/299 (52%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y  +I  L +   ++ ++ +  ++ H   I P    F +VI    +   +E A ++
Sbjct: 247 DIFTYSTLIDALCKLSQWENVRTLFLEMIH-LNIYPNVCTFNSVIDGLCKEGKVEDAEEI 305

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
              M    V   V  +N +++     G++DR +E+F  M  K + PD  SYNILI+G   
Sbjct: 306 MRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYAR 365

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            +++++A +V  E+ ++ L+P++VT   L++GL    R   A    ++++   ++ PD  
Sbjct: 366 QKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHI-PDLY 424

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
              +L+ G    G +  A+    ++ R + + +  IY+++I  L K G+ ++  A  +++
Sbjct: 425 THCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKL 484

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              G  P+ +TY A+ISG+C+E   + A  +L +M D GC A+  +YNVI+ G  +  K
Sbjct: 485 PLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNK 543



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 140/309 (45%), Gaps = 8/309 (2%)

Query: 38  HPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
           H  K   YN + +  +I  L       +   +  +L  +    P E+++  V+    +  
Sbjct: 133 HFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKG 192

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYN 156
             ++A  +   M   + +   + +  +++     G LD    L   M +K + PD  +Y+
Sbjct: 193 HTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYS 252

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            LI       + E+   +F EM+   + P + TF ++I GLC E +V++A    E+IMR 
Sbjct: 253 TLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDA----EEIMRY 308

Query: 217 Y---NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
                V PD   +  +I G    G++  A  + + M+   IE D   Y+ LI+   +  +
Sbjct: 309 MIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKK 368

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +E   + +E+ ++G KP+ VT N L+ G  +    ++A    DEM   G   +  ++  
Sbjct: 369 IDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCT 428

Query: 334 ILGGLCKDG 342
           +LGG  K+G
Sbjct: 429 LLGGYFKNG 437



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 143/297 (48%), Gaps = 3/297 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  ++ +I  L +    ++ ++I+  +  +  + P  I +  +I  YG    ++RA ++
Sbjct: 282 NVCTFNSVIDGLCKEGKVEDAEEIMRYMI-EKGVDPDVITYNMIIDGYGLRGQVDRAREI 340

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVV 164
           FD M + +++  +  +N L+N      K+D  M+   +I +K + P   + N+L+HG   
Sbjct: 341 FDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFE 400

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R + A   FDEM+     P L T  TL+ G      V+EA+     + R      + Q
Sbjct: 401 LGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRRE-DTNIQ 459

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++ ++I GLC  G+L  A    E++    +  D   Y+++IS   + G  +E   +L++M
Sbjct: 460 IYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKM 519

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           ++ GC  ++ TYN ++ GF +          L+E+  K       +  +++  + +D
Sbjct: 520 EDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDIIAED 576



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 123/266 (46%), Gaps = 9/266 (3%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           T+ +P    F  ++      +     + +F E+    + +     + ++N   +C  + R
Sbjct: 66  TKPLPSVASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVHEFILSIVVN---SCCLMHR 122

Query: 137 MKELFQIM----EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL-QPTLVTFG 191
               F ++    +K +  +  ++  LI G     +++DA  +F ++V+  + +P  V +G
Sbjct: 123 TDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYG 182

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           T++ GLC +    +A  L   +M   + KP+ + +  +I   C  G L  A  +  EM +
Sbjct: 183 TVMNGLCKKGHTQKAFDLLR-LMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQ 241

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
             I  D   YS+LI AL K  +      +  EM      PN  T+N++I G CKE   E 
Sbjct: 242 KSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVED 301

Query: 312 AFTILDEMGDKGCKANPISYNVILGG 337
           A  I+  M +KG   + I+YN+I+ G
Sbjct: 302 AEEIMRYMIEKGVDPDVITYNMIIDG 327



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 118/252 (46%), Gaps = 1/252 (0%)

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-D 151
           +   + L+ A  +F +M       +V  F+ LL   +       +  LF+ + K   P  
Sbjct: 47  FQNVKCLDDAFSLFRQMVRTKPLPSVASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVH 106

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
               +I+++ C +  R +  + V     K+ +    VTF TLI GL  E +V +A+ L +
Sbjct: 107 EFILSIVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFK 166

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            ++R    +P+  ++ +++ GLC  G    A  +   M +   + +   Y+ +I A  K 
Sbjct: 167 KLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKD 226

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G  +   ++L EMK++   P+  TY+ LI   CK   +E   T+  EM       N  ++
Sbjct: 227 GMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTF 286

Query: 332 NVILGGLCKDGK 343
           N ++ GLCK+GK
Sbjct: 287 NSVIDGLCKEGK 298



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 136/273 (49%), Gaps = 6/273 (2%)

Query: 75  HDTRIVP-KEIIFCNVI-GFYGRARLLERALQMFDEMSSFNV-QMTVKFFNTLLNPKLTC 131
           H  + +P  E+ F  +I G +   ++ + A+ +F ++   N+ +     + T++N     
Sbjct: 133 HFKKGIPYNEVTFTTLIRGLFAENKV-KDAVHLFKKLVRENICEPNEVMYGTVMNGLCKK 191

Query: 132 GKLDRMKELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           G   +  +L ++ME+    P+  +Y I+I        L+ A  + +EM ++ + P + T+
Sbjct: 192 GHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTY 251

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
            TLI  LC   + +    L  +++ + N+ P+   F S+I GLC  G++  A  +   M+
Sbjct: 252 STLIDALCKLSQWENVRTLFLEMIHL-NIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMI 310

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
              ++ D   Y+ +I      G+ +    I   M  +  +P+ ++YN LI+G+ +++  +
Sbjct: 311 EKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKID 370

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            A  +  E+  KG K + ++ NV+L GL + G+
Sbjct: 371 EAMQVCREISQKGLKPSIVTCNVLLHGLFELGR 403


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 123/243 (50%), Gaps = 2/243 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           + +AL   D++ +    +    + TL+N     G+     +L + ++ K V  +A  YN 
Sbjct: 154 IHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNT 213

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I G    + + DA+ ++ EMV +R+ P +VT+  LI G  +  ++ +A+ L    M + 
Sbjct: 214 VIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNK-MILE 272

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N+KPD   F  L+ G C  G L  A  V + M+   I+ +   +++L+    K  +  E 
Sbjct: 273 NIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEG 332

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +   M ++G KPN VTY +L+ G+C  +    A  I + M  +G  AN  SYN+++ G
Sbjct: 333 KTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMING 392

Query: 338 LCK 340
            CK
Sbjct: 393 FCK 395



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 128/243 (52%), Gaps = 2/243 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           ALQ+   +    VQ+    +NT+++       ++   +L+ +++ K +SPD  +Y+ LI 
Sbjct: 192 ALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIR 251

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G  +  +L+DA  +F++M+   ++P + TF  L+ G C E R+ +A K   D+M + ++K
Sbjct: 252 GFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKA-KNVLDMMMIQDIK 310

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   F +L+ G C   ++     V   M++  I+ +   Y SL+       + N+   I
Sbjct: 311 PNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKI 370

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
              M +RG   N  +YN +I+GFCK +  + A  +  EM  K    + ++YN ++ GLCK
Sbjct: 371 FNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCK 430

Query: 341 DGK 343
            GK
Sbjct: 431 SGK 433



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 148/298 (49%), Gaps = 5/298 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVP-KEIIFCNVIGFYGRARLLER 101
           F  + + Y  +I  L +        Q+L ++  D ++V    +++  VI    + + +  
Sbjct: 169 FHLDQVSYGTLINGLCKVGETRAALQLLRRV--DGKLVQLNAVMYNTVIDGMSKDKHVND 226

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           A  ++ EM +  +   V  ++ L+      GKL    +LF +++ + + PD  ++NIL+ 
Sbjct: 227 AFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVD 286

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     RL+ A  V D M+ + ++P + TF TL+ G C + ++ E   +   +M+   +K
Sbjct: 287 GFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMK-QGIK 345

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   + SL+ G C V +++ A  +   M +  +  +   Y+ +I+   K  + ++   +
Sbjct: 346 PNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKL 405

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             EM  +   P+ VTYN+LI G CK      AF +++EM D+G   N I+YN IL  L
Sbjct: 406 FIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILNAL 463



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 125/281 (44%), Gaps = 37/281 (13%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           ++ A+ +F+ +   N  +T   FN +L   +       +  L Q ME + ++P+  ++NI
Sbjct: 49  VDGAVSLFNSLLHQNPTLTAFEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFVTFNI 108

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+       +  A+ V  +++K   +P ++T  T I G CL+ ++ +AL   + ++ + 
Sbjct: 109 LINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVAL- 167

Query: 218 NVKPDGQVFASLIKGLCAVGELSLAL---------------------------------- 243
               D   + +LI GLC VGE   AL                                  
Sbjct: 168 GFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDA 227

Query: 244 -GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
             +  EMV  +I  D   YS+LI   F  G+  +   +  +M     KP+  T+N L+ G
Sbjct: 228 FDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDG 287

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           FCKE   + A  +LD M  +  K N  ++N ++ G CKD K
Sbjct: 288 FCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRK 328



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 150/304 (49%), Gaps = 28/304 (9%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLL 99
           K  + N + Y+ +I  + + K  ++   +  ++    RI P  + +  +I GF+   +L 
Sbjct: 202 KLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMV-AKRISPDVVTYSALIRGFFIVGKL- 259

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNIL 158
           + A+ +F++M   N++  V  FN L++     G+L + K +  +M  + + P+  ++N L
Sbjct: 260 KDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTL 319

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           + G    R++++   VF  M+K+ ++P +VT+ +L+ G CL  +V++A K+  + M    
Sbjct: 320 VDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKI-FNTMSQRG 378

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR----- 273
           V  +   +  +I G C + ++  A+ +  EM    I  D   Y+SLI  L K+G+     
Sbjct: 379 VTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAF 438

Query: 274 --KNE----------------FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
              NE                  A+L ++K++G +PN  T   LI G C+    EAA  +
Sbjct: 439 QLVNEMHDRGQPPNIITYNSILNALLTKLKDQGIQPNMHTDTILIKGLCQSGKLEAARKV 498

Query: 316 LDEM 319
            +++
Sbjct: 499 FEDL 502



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 90/173 (52%), Gaps = 14/173 (8%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + +C+++  Y   + + +A ++F+ MS   V   V  +N ++N      K+D+  
Sbjct: 344 IKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAM 403

Query: 139 ELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           +LF ++  K++ PD  +YN LI G   S ++  A+++ +EM  R   P ++T+ +++  L
Sbjct: 404 KLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILNAL 463

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
             +L+ D+             ++P+      LIKGLC  G+L  A  V E+++
Sbjct: 464 LTKLK-DQG------------IQPNMHTDTILIKGLCQSGKLEAARKVFEDLL 503


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 148/285 (51%), Gaps = 8/285 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLL 99
           K  R N++ Y  ++  L  +  +++  ++L  +    +I P  I +  ++  F    ++L
Sbjct: 219 KGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIK-RKITPNVITYSALLDAFVKNGKVL 277

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           E A ++F+EM   ++   +  +++L+N      ++D   ++F +M  K   PD  SYN L
Sbjct: 278 E-AKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTL 336

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G   ++R+ED  K+F +M +R L    VT+ TLI G      VD+A +     M  + 
Sbjct: 337 INGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQ-MDSFG 395

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V PD   +  L+ GLC  G L  AL + E+M + ++++D   Y+++I  + K G+  +  
Sbjct: 396 VSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAW 455

Query: 279 AILKEMKERGCKPNSVTYNALISGFCK---EEDFEAAFTILDEMG 320
            +   +  +G KP+ VTY  ++SG C    + + EA +T + + G
Sbjct: 456 GLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEG 500



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 136/263 (51%), Gaps = 2/263 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +   +++  + R   +  A+ + D+M     +  +  +N +++      +++   + 
Sbjct: 153 PDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDF 212

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F +I  K + P+  +Y  L++G   S R  DA ++  +M+KR++ P ++T+  L+     
Sbjct: 213 FKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVK 272

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             +V EA ++ E+++R+ ++ PD   ++SLI GLC    +  A  + + MV      D  
Sbjct: 273 NGKVLEAKEIFEEMVRM-SIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVV 331

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI+   KA R  +   + ++M +RG   N+VTYN LI GF +  D + A     +M
Sbjct: 332 SYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQM 391

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G   +  +YN++LGGLC +G
Sbjct: 392 DSFGVSPDIWTYNILLGGLCDNG 414



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 131/264 (49%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKE 139
           P  + +  +I    + R +  AL  F E+    ++  V  +  L+N     G+  D  + 
Sbjct: 188 PDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARL 247

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L  ++++ ++P+  +Y+ L+   V + ++ +A ++F+EMV+  + P +VT+ +LI GLCL
Sbjct: 248 LRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCL 307

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R+DEA ++  D+M      PD   + +LI G C    +   + +  +M +  +  +  
Sbjct: 308 HDRIDEANQM-FDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTV 366

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI   F+ G  ++      +M   G  P+  TYN L+ G C     E A  I ++M
Sbjct: 367 TYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDM 426

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
                  + ++Y  ++ G+CK GK
Sbjct: 427 QKSEMDLDIVTYTTVIQGMCKTGK 450



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 143/287 (49%), Gaps = 4/287 (1%)

Query: 55  TKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNV 114
           T+L   K+ D +      +K  TR  P  + F  ++    + +  +  + +  +M    +
Sbjct: 59  TRLRDIKLHDAINLFREMVK--TRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGI 116

Query: 115 QMTVKFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWK 173
           +  +  FN ++N    C ++   +  L ++++    PD  +   L++G     R+ DA  
Sbjct: 117 RNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVS 176

Query: 174 VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGL 233
           + D+MV+   +P +V +  +I  LC   RV++AL   ++I R   ++P+   + +L+ GL
Sbjct: 177 LVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGR-KGIRPNVVTYTALVNGL 235

Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
           C  G  + A  +  +M++ KI  +   YS+L+ A  K G+  E   I +EM      P+ 
Sbjct: 236 CNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDI 295

Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           VTY++LI+G C  +  + A  + D M  KGC  + +SYN ++ G CK
Sbjct: 296 VTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCK 342



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 1/177 (0%)

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           +L DA  +F EMVK R  P++V F  L+  +    + D  + L +  M V  ++ D   F
Sbjct: 65  KLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKK-MEVLGIRNDLYTF 123

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
             +I   C   ++SLAL V  +M++   E D     SL++   +  R ++  +++ +M E
Sbjct: 124 NIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE 183

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            G +P+ V YNA+I   CK      A     E+G KG + N ++Y  ++ GLC  G+
Sbjct: 184 IGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGR 240



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 1/194 (0%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P    +N L+   V  ++ +    +  +M    ++  L TF  +I   C   +V  AL +
Sbjct: 83  PSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSV 142

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
              ++++   +PD     SL+ G C    +S A+ + ++MV      D   Y+++I +L 
Sbjct: 143 LGKMLKL-GYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLC 201

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           K  R N+     KE+  +G +PN VTY AL++G C    +  A  +L +M  +    N I
Sbjct: 202 KTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVI 261

Query: 330 SYNVILGGLCKDGK 343
           +Y+ +L    K+GK
Sbjct: 262 TYSALLDAFVKNGK 275


>gi|334183970|ref|NP_177858.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332197845|gb|AEE35966.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 402

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 136/270 (50%), Gaps = 13/270 (4%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           ++ PK   + N++    R  L+E   +++ EM    V   +  FNTL+N     G +   
Sbjct: 117 KLTPK--CYNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEA 174

Query: 138 KE-LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           K+ +  +++    PD  +Y   I G    + ++ A+KVF EM +       V++  LIYG
Sbjct: 175 KQYVTWLIQAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYG 234

Query: 197 LCLELRVDEAL----KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           L    ++DEAL    K+K+D     N  P+ + +  LI  LC  G+ S A+ + ++M   
Sbjct: 235 LFEAKKIDEALSLLVKMKDD-----NCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSES 289

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
            I+ D  +Y+ LI +       +E   +L+ M E G  PN +TYNALI GFCK ++   A
Sbjct: 290 GIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMPNVITYNALIKGFCK-KNVHKA 348

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDG 342
             +L +M ++    + I+YN ++ G C  G
Sbjct: 349 MGLLSKMLEQNLVPDLITYNTLIAGQCSSG 378



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 155/337 (45%), Gaps = 26/337 (7%)

Query: 7   RLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEM 66
            ++ L  L  DP+ AL      +  PN         F++N+  Y  ++T L         
Sbjct: 29  HVSSLFSLNLDPQTALSFSDWISRIPN---------FKHNVTSYASLVTLLCS------- 72

Query: 67  QQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ--MTVKFFNTL 124
           Q+I +++   T ++ K    CN +     A  +    +   +  SF ++  +T K +N L
Sbjct: 73  QEIPYEVPKITILMIKS---CNSVR---DALFVVDFCRTMRKGDSFEIKYKLTPKCYNNL 126

Query: 125 LNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
           L+     G ++ MK L+ +++E  VSPD  ++N L++G      + +A +    +++   
Sbjct: 127 LSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQAGC 186

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P   T+ + I G C    VD A K+ ++ M       +   +  LI GL    ++  AL
Sbjct: 187 DPDYFTYTSFITGHCRRKEVDAAFKVFKE-MTQNGCHRNEVSYTQLIYGLFEAKKIDEAL 245

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            +  +M  D    +   Y+ LI AL  +G+K+E   + K+M E G KP+   Y  LI  F
Sbjct: 246 SLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSF 305

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           C  +  + A  +L+ M + G   N I+YN ++ G CK
Sbjct: 306 CSGDTLDEASGLLEHMLENGLMPNVITYNALIKGFCK 342



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 6/141 (4%)

Query: 209 LKEDIMRVYN------VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
           L E++ R+Y       V PD   F +L+ G C +G +  A      +++   + D   Y+
Sbjct: 135 LVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQAGCDPDYFTYT 194

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           S I+   +    +    + KEM + GC  N V+Y  LI G  + +  + A ++L +M D 
Sbjct: 195 SFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDD 254

Query: 323 GCKANPISYNVILGGLCKDGK 343
            C  N  +Y V++  LC  G+
Sbjct: 255 NCCPNVRTYTVLIDALCGSGQ 275



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 96/216 (44%), Gaps = 3/216 (1%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKE 139
           P    + + I  + R + ++ A ++F EM+          +  L+       K+D  +  
Sbjct: 188 PDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSL 247

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L ++ +    P+  +Y +LI     S +  +A  +F +M +  ++P    +  LI   C 
Sbjct: 248 LVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCS 307

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
              +DEA  L E ++    + P+   + +LIKG C    +  A+G+  +M+   +  D  
Sbjct: 308 GDTLDEASGLLEHMLE-NGLMPNVITYNALIKGFCK-KNVHKAMGLLSKMLEQNLVPDLI 365

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            Y++LI+    +G  +    +L  M+E G  PN  T
Sbjct: 366 TYNTLIAGQCSSGNLDSAYRLLSLMEESGLVPNQRT 401


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 147/306 (48%), Gaps = 8/306 (2%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARL 98
            + F  N + Y +++  L R    DE Q +L+++       P ++ F  +I G+    RL
Sbjct: 306 FRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVP-----TPNDVHFTILINGYVKSGRL 360

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
            E    ++D+M     +  V  FNTL++     G +    ++   M     +P+  +Y  
Sbjct: 361 DEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTT 420

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L+ G     +LE+A  V +EM  +  +  ++ +  L+  LC   +V +AL +  + M   
Sbjct: 421 LLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGE-MSDK 479

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             KPD   F +LI GLC V     AL +  +M+ D +  +   Y++LI A  + G   E 
Sbjct: 480 GCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEA 539

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             ++ +M  RGC  + +TYN LI  FCK    E A  + DEM  K    + IS N+++ G
Sbjct: 540 LKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLING 599

Query: 338 LCKDGK 343
           LC+ GK
Sbjct: 600 LCRVGK 605



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 159/325 (48%), Gaps = 36/325 (11%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I KLG AK F  + ++L Q+K +  I  +E +F  ++ +YGRA L  +A +M  +M
Sbjct: 105 YHVLIDKLGAAKEFKVIDKLLLQIKEEG-IAFRESLFICIMKYYGRANLPGQATRMLLDM 163

Query: 110 SS-FNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRR 167
              +  + T K +N +L+  ++         +F +++ K V P   ++ +++    +   
Sbjct: 164 KGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNE 223

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           +++A  +  +M K    P  V + TLI+ L    RV+EALKL E+ M +    PD   F 
Sbjct: 224 VDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEE-MFLMGCLPDVDTFN 282

Query: 228 SLIKGLCAVGEL------------------SLALGV------------KEEMVRDKIEMD 257
            +I GLC +  +                   +  GV            + +++ +K+   
Sbjct: 283 DVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTP 342

Query: 258 AGI-YSSLISALFKAGRKNEFPAILKE-MKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
             + ++ LI+   K+GR +E  A L + M + GC+P+  T+N LI G CK+    +A  +
Sbjct: 343 NDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDM 402

Query: 316 LDEMGDKGCKANPISYNVILGGLCK 340
           +++M   GC  N I+Y  +L G CK
Sbjct: 403 VNDMSANGCTPNLITYTTLLDGFCK 427



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 132/264 (50%), Gaps = 2/264 (0%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
            P  I +  ++  + +   LE A  + +EMS+   ++ +  +N LL      GK+ +  +
Sbjct: 412 TPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALD 471

Query: 140 LF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           +  ++ +K   PD  ++N LI G     R EDA  ++ +M+   +    VT+ TLI+   
Sbjct: 472 MLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFL 531

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
               + EALKL  D M       D   +  LIK  C +G    ALG+ +EMVR  +    
Sbjct: 532 RGGAIQEALKLVND-MLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSN 590

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
              + LI+ L + G+      +L++M  RG  P+ VTYN+LI+G CK  +   AF + ++
Sbjct: 591 ISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNK 650

Query: 319 MGDKGCKANPISYNVILGGLCKDG 342
           +  +G + + I+YN ++   C+ G
Sbjct: 651 LQAEGIQPDAITYNTLICWHCRAG 674


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 134/269 (49%), Gaps = 2/269 (0%)

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           D++I+P  I    V+    +  ++ +A  + D M    V+  V  +  L++      ++D
Sbjct: 277 DSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMD 336

Query: 136 RMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
              ++F +M  K  +P+  SYN LI+G     R++ A  +F+EM +++L P  VT+ TLI
Sbjct: 337 EAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLI 396

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
           +GLC   R+ +A+ L  +++    + PD   +  L+  LC    L  A+ + + +    +
Sbjct: 397 HGLCHVGRLQDAIALFREMVACGQI-PDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNL 455

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           + D  IY+ +I  + +AG   +   +   +  +G KPN  TYN +  G CK    + A  
Sbjct: 456 DPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATK 515

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  EM +  C A+  +YN I  G  ++ +
Sbjct: 516 LFMEMDENACSADGCTYNTITQGFLRNNE 544



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 115/244 (47%), Gaps = 2/244 (0%)

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILI 159
            AL +FD+M     Q  V  + TL+N     G       L + MEK    PD   Y  LI
Sbjct: 162 EALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLI 221

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           H     R+   A+ +F EM+ + + P +VT  +L+Y LC  L   + +    + M    +
Sbjct: 222 HSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALC-NLGEWKHVNTLLNEMVDSKI 280

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+     +++  LC  G ++ A  V + M +  +E D   Y++LI         +E   
Sbjct: 281 MPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVK 340

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +   M  +GC PN  +YN LI+G+CK E  + A  + +EM  +    N ++YN ++ GLC
Sbjct: 341 VFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLC 400

Query: 340 KDGK 343
             G+
Sbjct: 401 HVGR 404



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 141/298 (47%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N +    ++  L +  M  +   ++  +   + + P  + +  +I  +     ++ A+++
Sbjct: 283 NAISLTTVVDALCKEGMVAQAHDVV-DMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKV 341

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
           FD M        V  +NTL+N      ++D+   LF+ M  + + P+  +YN LIHG   
Sbjct: 342 FDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCH 401

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             RL+DA  +F EMV     P LVT+  L+  LC    +D+A+ L + I    N+ PD Q
Sbjct: 402 VGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAI-EGSNLDPDIQ 460

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++  +I G+C  GEL  A  +   +    ++ +   Y+ +   L K G  +E   +  EM
Sbjct: 461 IYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEM 520

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            E  C  +  TYN +  GF +  +   A  +L+EM  +G   +  +  +++G L  DG
Sbjct: 521 DENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTTLLVGMLSDDG 578



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 128/299 (42%), Gaps = 43/299 (14%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++    + +     L +  +M SF +   V   N L+N   +   L+R+   
Sbjct: 72  PSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLIN---SFCHLNRVNFA 128

Query: 141 FQIMEKYV----SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           F ++ K +     PD  S+  LI G  +  ++ +A  +FD+M+    QP +V + TLI G
Sbjct: 129 FSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLING 188

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIK------------------------- 231
           LC       A++L    M   N +PD  V+ +LI                          
Sbjct: 189 LCKTGHTSAAIRLLRS-MEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISP 247

Query: 232 ----------GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
                      LC +GE      +  EMV  KI  +A   ++++ AL K G   +   ++
Sbjct: 248 NIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVV 307

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             M + G +P+ VTY ALI G C   + + A  + D M  KGC  N  SYN ++ G CK
Sbjct: 308 DMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCK 366



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 124/251 (49%), Gaps = 2/251 (0%)

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-D 151
           Y     L+ AL  F+ M   +   ++  F  +L       +   +  L + M+ +  P +
Sbjct: 49  YLHFNTLDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHN 108

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             + N+LI+      R+  A+ V  +++K   QP   +F TLI GLCLE ++ EAL L  
Sbjct: 109 VYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLF- 167

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
           D M     +PD  ++A+LI GLC  G  S A+ +   M +   + D  +Y +LI +L K 
Sbjct: 168 DKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKD 227

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
            ++ +   +  EM  +G  PN VT N+L+   C   +++   T+L+EM D     N IS 
Sbjct: 228 RQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISL 287

Query: 332 NVILGGLCKDG 342
             ++  LCK+G
Sbjct: 288 TTVVDALCKEG 298



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 128/269 (47%), Gaps = 5/269 (1%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLE--RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           T+ +   I+ CN +  Y    L E      + +EM    +        T+++     G +
Sbjct: 242 TKGISPNIVTCNSL-VYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMV 300

Query: 135 DRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
            +  ++  +M +  V PD  +Y  LI G  +   +++A KVFD MV +   P + ++ TL
Sbjct: 301 AQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTL 360

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G C   R+D+A+ L E++ R   + P+   + +LI GLC VG L  A+ +  EMV   
Sbjct: 361 INGYCKIERMDKAMYLFEEMCR-QKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACG 419

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
              D   Y  L+  L K    ++  A+LK ++     P+   Y  +I G C+  + E A 
Sbjct: 420 QIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDAR 479

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDG 342
            +   +  KG K N  +YN++  GLCK G
Sbjct: 480 DLFSNLSSKGLKPNVWTYNIMTHGLCKRG 508



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 124/264 (46%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  +++  +I    + R   +A  +F EM +  +   +   N+L+      G+   +  L
Sbjct: 212 PDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTL 271

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
             ++++  + P+A S   ++        +  A  V D M +  ++P +VT+  LI G CL
Sbjct: 272 LNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCL 331

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
              +DEA+K+  D+M      P+   + +LI G C +  +  A+ + EEM R K+  +  
Sbjct: 332 RSEMDEAVKVF-DMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTV 390

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI  L   GR  +  A+ +EM   G  P+ VTY  L+   CK    + A  +L  +
Sbjct: 391 TYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAI 450

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
                  +   Y +++ G+C+ G+
Sbjct: 451 EGSNLDPDIQIYTIVIDGMCRAGE 474



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 99/209 (47%), Gaps = 1/209 (0%)

Query: 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           D +    +++  +  P    +  ++      +R      +  +M    +   + T   LI
Sbjct: 57  DALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLI 116

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
              C   RV+ A  +   I+++   +PD   F +LIKGLC  G++  AL + ++M+ +  
Sbjct: 117 NSFCHLNRVNFAFSVLAKILKL-GCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGF 175

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           + D  IY++LI+ L K G  +    +L+ M++  C+P+ V Y  LI   CK+     AF 
Sbjct: 176 QPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFN 235

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  EM  KG   N ++ N ++  LC  G+
Sbjct: 236 LFSEMITKGISPNIVTCNSLVYALCNLGE 264


>gi|414875981|tpg|DAA53112.1| TPA: hypothetical protein ZEAMMB73_920038 [Zea mays]
          Length = 574

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 156/305 (51%), Gaps = 6/305 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           +R +    + ++  L RA   D +     +     R+ P    F  VI  + +   L +A
Sbjct: 149 YRPSAFSVNALLAALVRADRVD-LADRAFRAALRRRVSPDLFTFNIVISGFCKTGQLRKA 207

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE----LFQIMEKYVSPDACSYNIL 158
             +   +S++ V  +V  +NTL++     G++ +M      L ++++  +SPD  ++N+L
Sbjct: 208 GDVAKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISPDVVTFNVL 267

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G      +  A KVF EM ++ +   +VT+ +L+ GLC E +V++++KL E+ M    
Sbjct: 268 INGYCKEPNITAAIKVFQEMRQQGIPANVVTYNSLVSGLCREGKVEDSIKLVEE-MEELG 326

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           +        S++ G C  G +  A G  + + +  ++ +   Y++L+    + G+  E  
Sbjct: 327 LACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPNVITYNTLVDGYRRLGKMKEAA 386

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
           A    M  +G  PN  TYN LI+GF    D+ +   +LDEM +KG KA+ ++YNV++G L
Sbjct: 387 AAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSVSGLLDEMKEKGVKADVVTYNVLIGAL 446

Query: 339 CKDGK 343
           C  G+
Sbjct: 447 CCKGE 451



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 128/268 (47%), Gaps = 6/268 (2%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + F  +I  Y +   +  A+++F EM    +   V  +N+L++     GK++   
Sbjct: 257 ISPDVVTFNVLINGYCKEPNITAAIKVFQEMRQQGIPANVVTYNSLVSGLCREGKVEDSI 316

Query: 139 ELFQIMEKYVSPDAC---SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
           +L + ME+     AC   + N +++G      + +A    D + +R ++P ++T+ TL+ 
Sbjct: 317 KLVEEMEEL--GLACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPNVITYNTLVD 374

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G    L   +     +D M    + P+ + +  LI G     +     G+ +EM    ++
Sbjct: 375 GY-RRLGKMKEAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSVSGLLDEMKEKGVK 433

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y+ LI AL   G   +   +L EM E G +P  V YN +I+GFC++ D + A  I
Sbjct: 434 ADVVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHVAYNTIINGFCEKGDAQGAHEI 493

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
              M  +  +AN ++YNV L   CK GK
Sbjct: 494 RLRMEKRKKRANVVTYNVFLKYFCKMGK 521



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 128/287 (44%), Gaps = 18/287 (6%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQMFDEMSSFNVQMTVK 119
           K+F EM+Q         + +P  ++  N ++    R   +E ++++ +EM    +   + 
Sbjct: 282 KVFQEMRQ---------QGIPANVVTYNSLVSGLCREGKVEDSIKLVEEMEELGLACILS 332

Query: 120 FFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
             N++LN     G +   +     I ++ + P+  +YN L+ G    RRL    +     
Sbjct: 333 TMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPNVITYNTLVDG---YRRLGKMKEAAAAK 389

Query: 179 VKRR---LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
                  + P + T+  LI G     R   ++    D M+   VK D   +  LI  LC 
Sbjct: 390 DAMAGKGISPNVKTYNCLITGFTTS-RDWRSVSGLLDEMKEKGVKADVVTYNVLIGALCC 448

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            GE+  A+ + +EMV   +E     Y+++I+   + G       I   M++R  + N VT
Sbjct: 449 KGEVRKAVKLLDEMVEVGLEPKHVAYNTIINGFCEKGDAQGAHEIRLRMEKRKKRANVVT 508

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           YN  +  FCK    + A  +L+EM +KG   N I+Y +I  G+ + G
Sbjct: 509 YNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNRITYEIINSGMIEKG 555


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 147/301 (48%), Gaps = 3/301 (0%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + ++  Y +++          EM  +L+ +  +  I P   IF      Y +  +++
Sbjct: 337 KGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANG-ISPNHHIFNIFFSAYAKCGIID 395

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
           +A+ +F++M    +      +  L++     G++D  +  F Q++ + V+PD   ++ L+
Sbjct: 396 KAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLV 455

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +G     + E   ++F EM+   + P +V F T++  LC E RV E  +L + I     V
Sbjct: 456 YGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSI-ECMGV 514

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +PD   + +LI G C  G +  A  + E MV   ++ D+  Y++L+    KAGR +   +
Sbjct: 515 RPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYS 574

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
             ++M   G  P  VTYN ++ G  + + F  A  +   M + G K +  +YN+IL GLC
Sbjct: 575 HFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLC 634

Query: 340 K 340
           K
Sbjct: 635 K 635



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 125/251 (49%), Gaps = 5/251 (1%)

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDA 152
           GR R    A   FD M    ++ +V  +  +L+   T G L  M +L  +M    +SP+ 
Sbjct: 322 GRCR---EARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNH 378

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
             +NI          ++ A  +F++M ++ L P  V++G LI  LC   RVD+A ++K +
Sbjct: 379 HIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDA-EVKFN 437

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M    V PD  VF+SL+ GLC V +      +  EM+   I  +   +++++  L K G
Sbjct: 438 QMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEG 497

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           R  E   ++  ++  G +P+ ++YN LI G C     + A  +L+ M   G K +  SYN
Sbjct: 498 RVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYN 557

Query: 333 VILGGLCKDGK 343
            +L G CK G+
Sbjct: 558 TLLHGYCKAGR 568



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 147/295 (49%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           +++  +   +  + D+   I ++++    + P  + +  +I    +   ++ A   F++M
Sbjct: 381 FNIFFSAYAKCGIIDKAMDIFNKMRQQG-LSPDAVSYGALIDALCKLGRVDDAEVKFNQM 439

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
            +  V   +  F++L+    T  K ++++ELF +++   + P+   +N ++       R+
Sbjct: 440 INEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRV 499

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +  ++ D +    ++P ++++ TLI G CL   +DEA KL E ++ V  +KPD   + +
Sbjct: 500 MEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSV-GLKPDSFSYNT 558

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ G C  G +  A     +M+ + I      Y++++  LF+  R +E   +   M   G
Sbjct: 559 LLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSG 618

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            K +  TYN +++G CK    + A  +   +  KG + N I++N+++G L K G+
Sbjct: 619 TKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGR 673



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 142/333 (42%), Gaps = 19/333 (5%)

Query: 21  ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-- 78
           AL+LF    P+     A P     +N L    +    GR     E + ++       R  
Sbjct: 33  ALKLFDELLPH-----ARPASVVAFNHL-LAAVSRSSGRRSTTSESETVVSLFNRMVRDC 86

Query: 79  ---IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL- 134
              + P    +  +IG + R   LE     F  +     +M     N LLN  L  GK  
Sbjct: 87  YIKVAPNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLN-GLCDGKRV 145

Query: 135 -DRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ---PTLVT 189
            + M  L Q M E    PD  SYNIL+ G    +R E+A ++   M   ++    P +V+
Sbjct: 146 GEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVS 205

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           + T+I G   E +VD+   L  ++M    + PD   + ++I GLC       A  V ++M
Sbjct: 206 YSTVINGFFTEGQVDKPYNLFLEMMD-RGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQM 264

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           + + ++ +   Y+ LI      G+  E   +L+EM   G KPN  TY +L++  CK    
Sbjct: 265 IDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRC 324

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
             A    D M  KG K +  +Y ++L G    G
Sbjct: 325 REARFFFDSMIGKGIKPSVTTYGIMLHGYATKG 357



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 133/296 (44%), Gaps = 51/296 (17%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNP-------KLTCGKLDRMKELFQIMEK----Y 147
           L  AL++FDE+       +V  FN LL         + T  + + +  LF  M +     
Sbjct: 30  LGDALKLFDELLPHARPASVVAFNHLLAAVSRSSGRRSTTSESETVVSLFNRMVRDCYIK 89

Query: 148 VSPDACSYNILI----------HG-CVVSRRLEDAWKVFDEMVKRRL------------- 183
           V+P+ C+Y+ILI          HG       L+  W++ D +V  +L             
Sbjct: 90  VAPNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRM-DHIVINQLLNGLCDGKRVGEA 148

Query: 184 -------------QPTLVTFGTLIYGLCLELRVDEALKLKEDIM--RVYNVKPDGQVFAS 228
                         P  V++  L+ GLC E R +EAL+L   +   +V++  P+   +++
Sbjct: 149 MDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYST 208

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I G    G++     +  EM+   I  D   Y+++I  L KA   +   A+ ++M + G
Sbjct: 209 VINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNG 268

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
            KPN  TYN LI G+     ++    +L+EM   G K N  +Y  +L  LCK+G+C
Sbjct: 269 VKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRC 324



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 136/305 (44%), Gaps = 5/305 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           +R + +  + ++  L   K   E   +L Q   +   +P  + +  ++      +  E A
Sbjct: 125 WRMDHIVINQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEA 184

Query: 103 LQMFDEMSSFNVQM---TVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNIL 158
           L++   M+   V      V  ++T++N   T G++D+   LF ++M++ + PD  +Y  +
Sbjct: 185 LELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTV 244

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   ++  + A  VF +M+   ++P + T+  LI+G     +  E +++ E+ M    
Sbjct: 245 IDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEE-MSAGG 303

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
            KP+   + SL+  LC  G    A    + M+   I+     Y  ++      G  +E  
Sbjct: 304 PKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMH 363

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +L  M   G  PN   +N   S + K    + A  I ++M  +G   + +SY  ++  L
Sbjct: 364 DLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDAL 423

Query: 339 CKDGK 343
           CK G+
Sbjct: 424 CKLGR 428



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 140/299 (46%), Gaps = 7/299 (2%)

Query: 48  LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL--LERALQM 105
           + Y  +I  L +    D+ +   +Q+ ++  + P  ++F +++  YG   +   E+  ++
Sbjct: 414 VSYGALIDALCKLGRVDDAEVKFNQMINEG-VTPDIVVFSSLV--YGLCTVDKWEKVEEL 470

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           F EM +  +   + FFNT+L      G++   + L   +E   V PD  SYN LI G  +
Sbjct: 471 FFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCL 530

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  +++A K+ + MV   L+P   ++ TL++G C   R+D A      ++    + P   
Sbjct: 531 AGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLS-NGITPGVV 589

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +++ GL      S A  +   M+    + D   Y+ +++ L K+   +E   + + +
Sbjct: 590 TYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNL 649

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G + N +T+N +I    K    E A  +   +   G   N ++Y +++  L ++G 
Sbjct: 650 CSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGS 708



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 133/302 (44%), Gaps = 12/302 (3%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNV-IGFYGRARLLERA 102
           ++++  Y++I+  L ++   DE  ++   L   ++ +   II  N+ IG   +    E A
Sbjct: 620 KWDIYTYNIILNGLCKSNCVDEAIKMFQNLC--SKGLQLNIITFNIMIGALLKGGRKEDA 677

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
           + +F  + +  +   V  +  ++   +  G L+    LF  MEK   +P++   N L+  
Sbjct: 678 MDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRR 737

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
            +    +  A     ++ +R       T   LI         DE     + + + Y +  
Sbjct: 738 LLHRGDISRAGAYLSKLDERNFSVEASTTSMLIS----IFSSDEYQHHAKSLPKKYRILN 793

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +    ++LIK    + +   A  +  EM+   +  D   Y++++  LF+ GR +E   + 
Sbjct: 794 EANS-SALIKKARRIDD---AYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELY 849

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             M     + N  TYN +++G CK    + AF +   +  KG + N I++N+++G L K 
Sbjct: 850 LSMINSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKG 909

Query: 342 GK 343
           G+
Sbjct: 910 GR 911



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 82/161 (50%), Gaps = 8/161 (4%)

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +RR++DA+ +F EM+ + L P +VT+ T+++GL    R  EA   KE  + + N +    
Sbjct: 804 ARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEA---KELYLSMINSRTQMN 860

Query: 225 VFAS--LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
           ++    ++ GLC    +  A  + + +    ++++   ++ +I AL K GRK +   +  
Sbjct: 861 IYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFA 920

Query: 283 EMKERGCKPNSVTYNALISGFCKE---EDFEAAFTILDEMG 320
            +   G  P+ VTY  +     +E   E+F+  F  +++ G
Sbjct: 921 AIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSG 961



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 111/245 (45%), Gaps = 6/245 (2%)

Query: 64   DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT 123
            DE Q     L    RI+ +     N      +AR ++ A  +F EM    +   V  +NT
Sbjct: 776  DEYQHHAKSLPKKYRILNE----ANSSALIKKARRIDDAYSLFREMLMKGLTPDVVTYNT 831

Query: 124  LLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR 182
            +L+     G+    KEL+  ++      +  +YNI+++G   S  +++A+K+F  +  + 
Sbjct: 832  ILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKG 891

Query: 183  LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
            LQ  ++TF  +I  L    R ++A+ L   I     + PD   +  + + L   G L   
Sbjct: 892  LQLNIITFNIMIGALLKGGRKEDAMDLFAAI-PANGLVPDVVTYRLVAENLIEEGSLEEF 950

Query: 243  LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
             G+   M +    +D+ + ++L+  L + G  +   A L ++ E+     + T + LIS 
Sbjct: 951  DGLFLTMEKSGTPLDSRLLNALVRRLLQRGDISRAGAYLSKLDEKNFSLEASTTSELISL 1010

Query: 303  FCKEE 307
            F + E
Sbjct: 1011 FSRGE 1015



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 88/191 (46%), Gaps = 2/191 (1%)

Query: 133 KLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           ++D    LF +++ K ++PD  +YN ++HG   + R  +A +++  M+  R Q  + T+ 
Sbjct: 806 RIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYN 865

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
            ++ GLC    VDEA K+ + +     ++ +   F  +I  L   G    A+ +   +  
Sbjct: 866 IILNGLCKSNCVDEAFKMFQSLCS-KGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPA 924

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
           + +  D   Y  +   L + G   EF  +   M++ G   +S   NAL+    +  D   
Sbjct: 925 NGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDISR 984

Query: 312 AFTILDEMGDK 322
           A   L ++ +K
Sbjct: 985 AGAYLSKLDEK 995


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 148/299 (49%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y  ++  L +    D    +L++++   RI    +IF  +I    + R +E A+ +
Sbjct: 222 DLVTYGTVVNGLCKRGDIDLALNLLNKMEA-ARIKANVVIFNTIIDSLCKYRHVEVAVDL 280

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
           F EM +  ++  V  +N+L+N     G+  D  + L  ++EK ++P+  ++N LI     
Sbjct: 281 FTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFK 340

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L +A K+ +EM++R + P  +T+  LI G C+  R+DEA ++ +  M   +  P+ Q
Sbjct: 341 EGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFK-FMVSKDCLPNIQ 399

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +LI G C    +   + +  EM +  +  +   Y+++I   F+AG  +    + K+M
Sbjct: 400 TYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQM 459

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
                  + +TY+ L+ G C     + A  I   +     + N   YN ++ G+CK GK
Sbjct: 460 VSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGK 518



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 161/358 (44%), Gaps = 52/358 (14%)

Query: 21  ALQLFKN---PNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 77
           A+ LF +     P P+  E + L      +  ++L+I+ LG     ++MQ +   + HD 
Sbjct: 67  AVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVIS-LG-----EQMQTL--GISHDL 118

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DR 136
                  IF N    + R   L  AL +  +M     +  +   ++LLN      ++ D 
Sbjct: 119 YTYS---IFINC---FCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172

Query: 137 MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           +  + Q++E    PD  ++  LIHG  +  +  +A  + D+MV+R  QP LVT+GT++ G
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNG 232

Query: 197 LCLELRVD---------EALKLKEDI-------------------------MRVYNVKPD 222
           LC    +D         EA ++K ++                         M    ++P+
Sbjct: 233 LCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPN 292

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + SLI  LC  G  S A  +   M+  KI  +   +++LI A FK G+  E   + +
Sbjct: 293 VVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHE 352

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           EM +R   P+++TYN LI+GFC     + A  +   M  K C  N  +YN ++ G CK
Sbjct: 353 EMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCK 410



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 153/303 (50%), Gaps = 8/303 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLL 99
           K  R N++ Y+ +I  L     + +  ++L  +  + +I P  + F  +I  F+   +L+
Sbjct: 287 KGIRPNVVTYNSLINCLCNYGRWSDASRLLSNML-EKKINPNVVTFNALIDAFFKEGKLV 345

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           E A ++ +EM   ++      +N L+N      +LD  K++F+ M  K   P+  +YN L
Sbjct: 346 E-AEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTL 404

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G    +R+ED  ++F EM +R L    VT+ T+I G       D A  + +  M    
Sbjct: 405 INGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQ-MVSNR 463

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V  D   ++ L+ GLC+ G+L  AL + + + + ++E++  IY+++I  + KAG+  E  
Sbjct: 464 VPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAW 523

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +   +     KP+ VTYN +ISG C +   + A  +  +M + G   N  +YN ++   
Sbjct: 524 DLFCSLS---IKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRAN 580

Query: 339 CKD 341
            +D
Sbjct: 581 LRD 583



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 122/246 (49%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           ++ A+ +F +M       ++  FN LL+      K + +  L + M+   +S D  +Y+I
Sbjct: 64  VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
            I+      +L  A  V  +M+K   +P +VT  +L+ G C   R+ +A+ L + ++ + 
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM- 182

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             KPD   F +LI GL    + S A+ + ++MV+   + D   Y ++++ L K G  +  
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +L +M+    K N V +N +I   CK    E A  +  EM  KG + N ++YN ++  
Sbjct: 243 LNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINC 302

Query: 338 LCKDGK 343
           LC  G+
Sbjct: 303 LCNYGR 308



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 104/209 (49%), Gaps = 2/209 (0%)

Query: 133 KLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           K+D   +LF  M K    P    +N L+       + E    + ++M    +   L T+ 
Sbjct: 63  KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
             I   C   ++  AL +   +M++   +PD    +SL+ G C    +S A+ + ++MV 
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKL-GYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE 181

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
              + D   +++LI  LF   + +E  A++ +M +RGC+P+ VTY  +++G CK  D + 
Sbjct: 182 MGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDL 241

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCK 340
           A  +L++M     KAN + +N I+  LCK
Sbjct: 242 ALNLLNKMEAARIKANVVIFNTIIDSLCK 270



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 92/176 (52%), Gaps = 1/176 (0%)

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           +++DA  +F +MVK R  P++V F  L+  +    + +  + L E  M+   +  D   +
Sbjct: 63  KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQ-MQTLGISHDLYTY 121

Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
           +  I   C   +LSLAL V  +M++   E D    SSL++    + R ++  A++ +M E
Sbjct: 122 SIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE 181

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            G KP++ T+  LI G         A  ++D+M  +GC+ + ++Y  ++ GLCK G
Sbjct: 182 MGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRG 237


>gi|356564752|ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 544

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 160/341 (46%), Gaps = 16/341 (4%)

Query: 13  RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRY---------NLLHYDLIITKLGRAKMF 63
           R    P   L++ K  N NPN       K FR+         +   Y++++  L +A + 
Sbjct: 70  REHLTPSHVLEVVKRFN-NPN----LGFKFFRFTRERLSMSHSFWTYNMLLRSLCQAGLH 124

Query: 64  DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT 123
           +  + +   ++ D ++ P   +   ++  +  A   + + ++  E     VQ+ V  +N 
Sbjct: 125 NSAKLLYDSMRSDGQL-PDSRLLGFLVSSFALADRFDVSKELLAEAQCSGVQVDVIVYNN 183

Query: 124 LLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR 182
            LN  +   +LD    LF ++M  +   DA ++NILI G   +  +++A+++  +M    
Sbjct: 184 FLNILIKHNRLDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGDVDEAFELLGDMGSFG 243

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
             P +VT+  L++GLC   +VD A  L E++       P+   + ++I G C + ++  A
Sbjct: 244 CSPDIVTYNILLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSYTTVISGYCRLSKMDEA 303

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
             +  EMVR   + +   +S+L+    KAG       + K++   GC PN +T  +LI+G
Sbjct: 304 SSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASALGMHKKILFHGCAPNVITLTSLING 363

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +C+         +  EM  +   AN  +Y+V++  LCK  +
Sbjct: 364 YCRAGWVNHGLDLWREMNARNIPANLYTYSVLISALCKSNR 404



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 125/247 (50%), Gaps = 4/247 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ--IMEKYVSPDACSYN 156
           ++ A ++  +M SF     +  +N LL+      ++DR ++L +   ++   +P+  SY 
Sbjct: 229 VDEAFELLGDMGSFGCSPDIVTYNILLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSYT 288

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            +I G     ++++A  +F EMV+   +P + TF  L+ G      +  AL + + I+  
Sbjct: 289 TVISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASALGMHKKIL-F 347

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           +   P+     SLI G C  G ++  L +  EM    I  +   YS LISAL K+ R  E
Sbjct: 348 HGCAPNVITLTSLINGYCRAGWVNHGLDLWREMNARNIPANLYTYSVLISALCKSNRLQE 407

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +L+ +K+    P +  YN +I G+CK  + + A  I+ EM +K CK + +++ +++ 
Sbjct: 408 ARNLLRILKQSDIVPLAFVYNPVIDGYCKSGNIDEANAIVAEMEEK-CKPDKLTFTILII 466

Query: 337 GLCKDGK 343
           G C  G+
Sbjct: 467 GHCMKGR 473



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 108/275 (39%), Gaps = 34/275 (12%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y++++  L R    D  + +L ++       P  + +  VI  Y R   ++ A  +
Sbjct: 247 DIVTYNILLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSYTTVISGYCRLSKMDEASSL 306

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           F EM     +  V  F+ L++  +  G +     + + I+    +P+  +   LI+G   
Sbjct: 307 FYEMVRSGTKPNVFTFSALVDGFVKAGDMASALGMHKKILFHGCAPNVITLTSLINGYCR 366

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-----KEDIMR---V 216
           +  +     ++ EM  R +   L T+  LI  LC   R+ EA  L     + DI+    V
Sbjct: 367 AGWVNHGLDLWREMNARNIPANLYTYSVLISALCKSNRLQEARNLLRILKQSDIVPLAFV 426

Query: 217 YN-------------------------VKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           YN                          KPD   F  LI G C  G    A+G+  +M+ 
Sbjct: 427 YNPVIDGYCKSGNIDEANAIVAEMEEKCKPDKLTFTILIIGHCMKGRTPEAIGIFYKMLA 486

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
                D     +L S L K+G   E   I + + E
Sbjct: 487 SGCTPDDITIRTLSSCLLKSGMPGEAARIKETLFE 521


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 124/264 (46%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  I     I  +     + +AL   D++ +    +    + TL+N     G+     EL
Sbjct: 261 PDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALEL 320

Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
            +  + K V PD   YN +I G    + + DA+ ++ E V +R+ P + T+  LI G C+
Sbjct: 321 LRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCI 380

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             ++ +A+ L    M   N+ PD   F+ L+ G C  G +  A  V   M++  I+ D  
Sbjct: 381 VGKLKDAIDLFNK-MTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVV 439

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            YSSL+         N+  +I   M  RG   N  +YN +I+GFCK +  + A  +  EM
Sbjct: 440 TYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEM 499

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             K    + I+Y+ ++ GLCK G+
Sbjct: 500 HHKQIFPDVITYSSLIDGLCKSGR 523



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 145/272 (53%), Gaps = 3/272 (1%)

Query: 74  KHDTRIV-PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132
           ++D ++V P  +++  +I    + + +  A  ++ E  S  +   V  +N L++     G
Sbjct: 323 RNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVG 382

Query: 133 KLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
           KL    +LF  M  K + PD  +++IL+ G      +++A  V   M+K+ ++P +VT+ 
Sbjct: 383 KLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYS 442

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           +L+ G CL   V++A  +  + M    V  + Q +  +I G C +  +  A+ + +EM  
Sbjct: 443 SLMDGYCLVNEVNKAESI-FNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHH 501

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
            +I  D   YSSLI  L K+GR +    ++ EM  RG +P+ +TYN+++   CK+   + 
Sbjct: 502 KQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDK 561

Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           A T+L ++  +G + +  +Y +++ GLC+ GK
Sbjct: 562 AITLLTKLKGQGIRPDMNTYTILVKGLCQSGK 593



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 149/298 (50%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ II  + + K  ++    L+  K   RI P    +  +I  +     L+ A+ +
Sbjct: 332 DVVMYNTIIDGMCKDKHVNDAFD-LYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDL 390

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           F++M+S N+   V  F+ L++     G +   K +  +M K  + PD  +Y+ L+ G  +
Sbjct: 391 FNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCL 450

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              +  A  +F+ M  R +   + ++  +I G C    VDEA+KL ++ M    + PD  
Sbjct: 451 VNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKE-MHHKQIFPDVI 509

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            ++SLI GLC  G +S AL + +EM     + D   Y+S++ AL K    ++   +L ++
Sbjct: 510 TYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKL 569

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           K +G +P+  TY  L+ G C+    E A  + +++  KG   +  +Y V++ G C  G
Sbjct: 570 KGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKG 627



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 128/246 (52%), Gaps = 2/246 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + + +++  Y     + +A  +F+ MS   V   V+ +N ++N       +D   
Sbjct: 434 IKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAM 493

Query: 139 ELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           +LF+ M  K + PD  +Y+ LI G   S R+  A ++ DEM  R  QP ++T+ +++  L
Sbjct: 494 KLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDAL 553

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C +  VD+A+ L    ++   ++PD   +  L+KGLC  G+L  A  V E+++     +D
Sbjct: 554 CKKHHVDKAITLLTK-LKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLD 612

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
              Y+ +I      G  +E  A+L +M+E GC P++ TY  +I    ++++ + A  +L 
Sbjct: 613 VYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLR 672

Query: 318 EMGDKG 323
           EM  +G
Sbjct: 673 EMIMRG 678



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 59/124 (47%)

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +PD     + IKG C  G++  AL   ++++     +D   Y +LI+ L K G       
Sbjct: 260 EPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALE 319

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +L+    +  +P+ V YN +I G CK++    AF +  E   K    +  +YN ++ G C
Sbjct: 320 LLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFC 379

Query: 340 KDGK 343
             GK
Sbjct: 380 IVGK 383



 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
           P ILK     G +P+++T    I GFC +     A    D++   G   + +SY  ++ G
Sbjct: 252 PKILKN----GYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLING 307

Query: 338 LCKDGK 343
           LCK G+
Sbjct: 308 LCKVGE 313


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 125/245 (51%), Gaps = 2/245 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           ++R+L   D++ +   QM    + TLLN     G+     +L +++E +   PD   Y+ 
Sbjct: 151 VKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYST 210

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I G    + +  A+  F EM  R + P ++T+ TLI+G CL  ++  A  L  + M + 
Sbjct: 211 IIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNE-MILK 269

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N+ P+   +  LI  LC  G++  A  +  EM       D   Y+S++  L K+   ++ 
Sbjct: 270 NINPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKA 329

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
            A+  +MK+ G +PN  TY ALI G CK    + A  +   +  KGC  +  +YNV++ G
Sbjct: 330 TALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISG 389

Query: 338 LCKDG 342
           LCK+G
Sbjct: 390 LCKEG 394



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 8/244 (3%)

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE------LFQIME-KYVSPDACSYNILI 159
           D +S FN  + V+    ++      G L +MK       L + ME K + P+  + NILI
Sbjct: 48  DTVSQFNRLLLVRHTPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNILI 107

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +      ++  ++ V  +++K   QP  +T  TL+ GLCL+  V  +L   + ++     
Sbjct: 108 NCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVV-AQGF 166

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           + +   + +L+ GLC +GE   A+ +   +       D  +YS++I  L K    N+   
Sbjct: 167 QMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYD 226

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
              EM  RG  PN +TY+ LI GFC       AF++L+EM  K    N  +YN+++  LC
Sbjct: 227 FFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALC 286

Query: 340 KDGK 343
           K+GK
Sbjct: 287 KEGK 290



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 132/302 (43%), Gaps = 35/302 (11%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD- 135
            R  P  I F  ++G+  + +    A+ +  +M    ++  +   N L+N     G++  
Sbjct: 59  VRHTPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFCHLGQMAF 118

Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
               L +I++    PD  + N L+ G  +   ++ +    D++V +  Q   V++GTL+ 
Sbjct: 119 SFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLN 178

Query: 196 GLCL---------ELRVDEALKLKEDI-------------------------MRVYNVKP 221
           GLC           LR+ E    + D+                         M    + P
Sbjct: 179 GLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFP 238

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   +++LI G C  G+L  A  +  EM+   I  +   Y+ LI AL K G+  E   +L
Sbjct: 239 NVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLL 298

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            EM  +G   + VTYN+++ G CK ++ + A  +  +M   G + N  +Y  ++ GLCK 
Sbjct: 299 AEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCKG 358

Query: 342 GK 343
           G+
Sbjct: 359 GR 360



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 132/255 (51%), Gaps = 2/255 (0%)

Query: 70  LHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL 129
           L ++  D    P  +++  +I    + +++ +A   F EM++  +   V  ++TL+    
Sbjct: 192 LLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFC 251

Query: 130 TCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
             G+L      L +++ K ++P+  +YNILI       ++++A K+  EM  +     +V
Sbjct: 252 LAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVV 311

Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
           T+ +++ GLC    +D+A  L    M+ + ++P+   + +LI GLC  G L  A  + + 
Sbjct: 312 TYNSVLDGLCKSQNLDKATALFMK-MKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQH 370

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           ++     +D   Y+ +IS L K G  ++  A+  +M++ GC PN+VT++ +I    ++++
Sbjct: 371 LLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGCIPNAVTFDIIIRSLFEKDE 430

Query: 309 FEAAFTILDEMGDKG 323
            + A  +L  M  KG
Sbjct: 431 NDKAEKLLHGMIAKG 445


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 125/245 (51%), Gaps = 2/245 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           L+ A    DEM    ++     ++ L+   L   K++   + +   ++  + PD  +Y++
Sbjct: 548 LDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSV 607

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I GC  + R E+  K+FDEM+   LQP  V +  LI   C   R+  AL+L+ED M+  
Sbjct: 608 MIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELRED-MKHK 666

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            + P+   + SLIKG+  +  +  A  + EEM  + +E +   Y++LI    K G+  + 
Sbjct: 667 GISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKV 726

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +L+EM  +   PN +TY  +I G+ ++ +   A  +L EM +KG   + I+Y   + G
Sbjct: 727 ECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFIYG 786

Query: 338 LCKDG 342
             K G
Sbjct: 787 YLKQG 791



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 126/248 (50%), Gaps = 8/248 (3%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACS 154
           LE   ++  E+      M    +NTL++    CG   ++ E F  M++ V     PD  +
Sbjct: 513 LEEGFRIQKEILGRGFVMDRVSYNTLISG--CCGN-KKLDEAFMFMDEMVKKGLKPDNYT 569

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           Y+ILI G +   ++E+A + + +  +  + P + T+  +I G C   R +E  KL +++M
Sbjct: 570 YSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMM 629

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
              N++P+  V+  LI   C  G LS+AL ++E+M    I  ++  Y+SLI  +    R 
Sbjct: 630 S-NNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRV 688

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            E   +L+EM+  G +PN   Y ALI G+ K         +L EM  K    N I+Y V+
Sbjct: 689 EEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVM 748

Query: 335 LGGLCKDG 342
           +GG  +DG
Sbjct: 749 IGGYARDG 756



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 146/294 (49%), Gaps = 3/294 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ +I  LG +  +DE      ++  +  + P  I +  ++    +A+ +  A  +
Sbjct: 286 NVVTYNTVIDGLGMSGRYDEAFMFKEKMV-ERGVEPTLITYSILVKGLTKAKRIGDAYCV 344

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
             EM+       V  +N L++  +  G L++  E+  +M  K +S  + +YN LI G   
Sbjct: 345 LKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCK 404

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S + + A ++  EM+         +F ++I  LC     D AL+   + M + N+ P G 
Sbjct: 405 SGQADIAERLLKEMLSIGFNVNQGSFTSVICLLCSHHMFDSALRFVGE-MLLRNMSPGGG 463

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           +  +LI GLC  G+ S A+ +  + +     +D    ++L+  L +AG+  E   I KE+
Sbjct: 464 LLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEI 523

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             RG   + V+YN LISG C  +  + AF  +DEM  KG K +  +Y++++ GL
Sbjct: 524 LGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGL 577



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 128/247 (51%), Gaps = 8/247 (3%)

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP----DACSYN 156
           +A++++ +  +    +  K  N LL+     GKL+   E F+I ++ +      D  SYN
Sbjct: 480 KAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLE---EGFRIQKEILGRGFVMDRVSYN 536

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            LI GC  +++L++A+   DEMVK+ L+P   T+  LI GL    +V+EA++   D  R 
Sbjct: 537 TLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKR- 595

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             + PD   ++ +I G C          + +EM+ + ++ +  +Y+ LI A  ++GR + 
Sbjct: 596 NGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSM 655

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              + ++MK +G  PNS TY +LI G       E A  +L+EM  +G + N   Y  ++ 
Sbjct: 656 ALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALID 715

Query: 337 GLCKDGK 343
           G  K G+
Sbjct: 716 GYGKLGQ 722



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 142/334 (42%), Gaps = 38/334 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
            L+ Y +++  L +AK   +   +L ++  +    P  I++ N+I     A  L +A+++
Sbjct: 321 TLITYSILVKGLTKAKRIGDAYCVLKEMT-EKGFPPNVIVYNNLIDSLIEAGSLNKAIEI 379

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            D M S  + +T   +NTL+      G+ D  + L  +++    + +  S+  +I     
Sbjct: 380 KDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLCS 439

Query: 165 SRRLEDAWKVFDEMVKRRLQP------TLV-----------------------------T 189
               + A +   EM+ R + P      TL+                             T
Sbjct: 440 HHMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKT 499

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
              L++GLC   +++E  +++++I+    V  D   + +LI G C   +L  A    +EM
Sbjct: 500 SNALLHGLCEAGKLEEGFRIQKEILGRGFVM-DRVSYNTLISGCCGNKKLDEAFMFMDEM 558

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           V+  ++ D   YS LI  L    +  E      + K  G  P+  TY+ +I G CK E  
Sbjct: 559 VKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERT 618

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           E    + DEM     + N + YN ++G  C+ G+
Sbjct: 619 EEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGR 652



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 89/194 (45%), Gaps = 2/194 (1%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P   + NIL+   V +   +   + F  +V + + P +  F T I   C   +V+EA++L
Sbjct: 216 PSKTTCNILLTSLVRATEFQKCCEAF-HVVCKGVSPDVYLFTTAINAFCKGGKVEEAIEL 274

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
               M    V P+   + ++I GL   G    A   KE+MV   +E     YS L+  L 
Sbjct: 275 FSK-MEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLT 333

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           KA R  +   +LKEM E+G  PN + YN LI    +      A  I D M  KG      
Sbjct: 334 KAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSS 393

Query: 330 SYNVILGGLCKDGK 343
           +YN ++ G CK G+
Sbjct: 394 TYNTLIKGYCKSGQ 407



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 114/280 (40%), Gaps = 41/280 (14%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP  Y    Y ++I  L      +E  Q     K +  ++P    +  +I    +A   
Sbjct: 563 LKPDNYT---YSILIRGLLNMNKVEEAIQFWGDCKRNG-MIPDVYTYSVMIDGCCKAERT 618

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNIL 158
           E   ++FDEM S N+Q     +N L+      G+L    EL + M+ K +SP++ +Y  L
Sbjct: 619 EEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSL 678

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G  +  R+E+A  + +EM    L+P +                               
Sbjct: 679 IKGMSIISRVEEAKLLLEEMRMEGLEPNVFH----------------------------- 709

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
                  + +LI G   +G++     +  EM    +  +   Y+ +I    + G   E  
Sbjct: 710 -------YTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEAS 762

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
            +L EM+E+G  P+S+TY   I G+ K+     AF   DE
Sbjct: 763 RLLHEMREKGIVPDSITYKEFIYGYLKQGGVLQAFKGSDE 802


>gi|255660916|gb|ACU25627.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 484

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 166/321 (51%), Gaps = 15/321 (4%)

Query: 35  TEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVPKEII 85
           T  H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +   E +
Sbjct: 24  TSEHALQFFRWVERSNLFEHNRDTHLKIIEILGRALKLNHARCILLDMPKKG-LEWDEDM 82

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIM 144
           +  +I  YG+A +++ ++++F +M    V+ T+K ++ L    +  G+    K  F +++
Sbjct: 83  WVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKML 142

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
            + + P   ++N+LI G  +S +++ A + F++M  R + P +VT+ T+I G     ++D
Sbjct: 143 SEGIEPTRHTFNVLIWGFFLSGKVDTANRFFEDMKSREISPDVVTYNTMINGCYRVKKMD 202

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  YS+L
Sbjct: 203 EAEKYFVE-MKGRNIEPTVVSYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTL 261

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           +  L  AG+ +E  +ILKEM ++   P  NS+ +  LIS  C+  +  AA  +L  M   
Sbjct: 262 LPGLCDAGKMSEAQSILKEMVDKYIAPKDNSI-FMRLISSQCEAGNLGAAADVLKAMIRL 320

Query: 323 GCKANPISYNVILGGLCKDGK 343
                   Y V++   CK G+
Sbjct: 321 SVPTEAGHYGVLIENFCKAGQ 341



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/315 (20%), Positives = 132/315 (41%), Gaps = 51/315 (16%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D ++  + P   +++ Y+ +I    R K  DE ++   ++K    I P  + +  +I  Y
Sbjct: 175 DMKSREISP---DVVTYNTMINGCYRVKKMDEAEKYFVEMK-GRNIEPTVVSYTTLIKGY 230

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSP-D 151
                ++ AL++ +EM  + ++     ++TLL      GK+   + +  ++++KY++P D
Sbjct: 231 VSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCDAGKMSEAQSILKEMVDKYIAPKD 290

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-- 209
              +  LI     +  L  A  V   M++  +      +G LI   C   + D+A+KL  
Sbjct: 291 NSIFMRLISSQCEAGNLGAAADVLKAMIRLSVPTEAGHYGVLIENFCKAGQHDKAVKLLD 350

Query: 210 ----KEDIMR---VYNVKPDGQVFASLIKGLCAVGELS---------LALGVKEE----- 248
               K+ I+R     +++P    +  +I+ LC  G+ +         L LGV++      
Sbjct: 351 KLIEKDIILRPQSTLHMEPSA--YNPMIEYLCNNGQTAKAEALVRQLLKLGVQDSTALNT 408

Query: 249 --------------------MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
                               M+R K++ +   Y SL+ +  K     +  A L  M E  
Sbjct: 409 LIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYDSLVQSYLKKNEPADAKAALGSMIEND 468

Query: 289 CKPNSVTYNALISGF 303
             P+S  + +++   
Sbjct: 469 HLPDSSLFRSVMESL 483


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 130/269 (48%), Gaps = 2/269 (0%)

Query: 68   QILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127
            QI  +      I P    +  +IG        E+A  +F +M +         FN LL  
Sbjct: 773  QIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAV 832

Query: 128  KLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
                GK+  + EL+ +++ +   PDA +YNI+I     S  L+ A   F ++V    +PT
Sbjct: 833  HGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPT 892

Query: 187  LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
              T+G LI GL    R++EA++L E+ M  Y  KP+  +F  LI G   +G+   A  + 
Sbjct: 893  PRTYGPLIDGLAKVGRLEEAMRLFEE-MSDYGCKPNCAIFNILINGYGKIGDTETACQLF 951

Query: 247  EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
            + MV + I  D   Y+ L+  L  AGR +E      E+K  G  P+ + YN +I+G  K 
Sbjct: 952  KRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKS 1011

Query: 307  EDFEAAFTILDEMGDKGCKANPISYNVIL 335
            +  E A  + +EM ++G   +  +YN ++
Sbjct: 1012 QRMEEALALYNEMRNRGIVPDLYTYNSLM 1040



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 137/293 (46%), Gaps = 3/293 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  ++ K       D  ++   Q++ D  + P  + F  ++    +AR  + A   FD M
Sbjct: 335 YITLLDKFNDFGDLDTFKEFWSQMEADGYM-PDVVTFTILVDVLCKARDFDEAFATFDVM 393

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
               +   +  +NTL+   L  G+++   +L   ME   V P A +Y   I     S   
Sbjct: 394 RKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGET 453

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
             A + F++M  + + P +V     +Y L    R+ EA K   + +R   + PD   +  
Sbjct: 454 GKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREA-KTMFNGLRENGLAPDSVTYNM 512

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           ++K    VG++  A+ +  EM+R+  E D  + +SLI +L+KAGR +E   +   MK+  
Sbjct: 513 MMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMK 572

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             P  VTYN L+SG  KE   + A  + + M  K C  N IS+N +L   CK+
Sbjct: 573 LSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKN 625



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 148/299 (49%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ + +++  L +A+ FDE       ++    I+P    +  +I    RA  +E AL++
Sbjct: 366 DVVTFTILVDVLCKARDFDEAFATFDVMRKQG-ILPNLHTYNTLICGLLRAGRIEDALKL 424

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            D M S  VQ T   + T ++     G+  +  E F+ M+ K + P+  + N  ++    
Sbjct: 425 LDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAE 484

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             RL +A  +F+ + +  L P  VT+  ++       +VDEA+ L  +++R    +PD  
Sbjct: 485 MGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIR-NGCEPDVI 543

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           V  SLI  L   G +  A  + + M   K+      Y++L+S L K GR  +   + + M
Sbjct: 544 VVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESM 603

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             + C PN++++N L+  FCK ++ E A  +  +M    CK + ++YN ++ GL K+ K
Sbjct: 604 IXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENK 662



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 139/283 (49%), Gaps = 3/283 (1%)

Query: 50   YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
            +++++   G++    E+ ++  ++    R  P  I +  VI    ++  L++AL  F ++
Sbjct: 826  FNMLLAVHGKSGKITELFELYKEMI-SRRCKPDAITYNIVISSLAKSNNLDKALDFFYDL 884

Query: 110  SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
             S + + T + +  L++     G+L+    LF+ M  Y   P+   +NILI+G       
Sbjct: 885  VSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDT 944

Query: 169  EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            E A ++F  MV   ++P L ++  L+  LCL  RVDEAL    + ++   + PD   +  
Sbjct: 945  ETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNE-LKSTGLDPDFIAYNR 1003

Query: 229  LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
            +I GL     +  AL +  EM    I  D   Y+SL+  L  AG   +   + +E++  G
Sbjct: 1004 IINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAG 1063

Query: 289  CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
             +P+  TYNALI G+   E+ E A+T+   M   GC  N  +Y
Sbjct: 1064 LEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTY 1106



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 149/348 (42%), Gaps = 51/348 (14%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           +  LKP   +L  Y  ++  LG+ K   EM  +L +   D  + P    F   I   GRA
Sbjct: 220 SEGLKP---SLKTYSALMVALGK-KRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRA 275

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK---------Y 147
             ++ A ++F  M        +  +  L++     G+L+  KELF  M+          Y
Sbjct: 276 GKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIY 335

Query: 148 VS---------------------------PDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           ++                           PD  ++ IL+     +R  ++A+  FD M K
Sbjct: 336 ITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRK 395

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
           + + P L T+ TLI GL    R+++ALKL  D M    V+P    + + I      GE  
Sbjct: 396 QGILPNLHTYNTLICGLLRAGRIEDALKLL-DTMESVGVQPTAYTYITFIDYFGKSGETG 454

Query: 241 LALGVKEEM-----VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            A+   E+M     V + +  +A +YS     L + GR  E   +   ++E G  P+SVT
Sbjct: 455 KAVETFEKMKAKGIVPNIVACNASLYS-----LAEMGRLREAKTMFNGLRENGLAPDSVT 509

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           YN ++  + K    + A  +L EM   GC+ + I  N ++  L K G+
Sbjct: 510 YNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGR 557



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 119/254 (46%), Gaps = 5/254 (1%)

Query: 48   LHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQMF 106
            + Y+++I+ L ++   D+     + L   D R  P+   +  +I    +   LE A+++F
Sbjct: 859  ITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPR--TYGPLIDGLAKVGRLEEAMRLF 916

Query: 107  DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVS 165
            +EMS +  +     FN L+N     G  +   +LF+ M  + + PD  SY IL+    ++
Sbjct: 917  EEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLA 976

Query: 166  RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             R+++A   F+E+    L P  + +  +I GL    R++EAL L  + MR   + PD   
Sbjct: 977  GRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNE-MRNRGIVPDLYT 1035

Query: 226  FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
            + SL+  L   G +  A  + EE+    +E D   Y++LI     +        + K M 
Sbjct: 1036 YNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMM 1095

Query: 286  ERGCKPNSVTYNAL 299
              GC PN  TY  L
Sbjct: 1096 VDGCNPNIGTYAQL 1109



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 140/299 (46%), Gaps = 4/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           NL  Y+ +I  L RA   ++  ++L  ++    + P    +   I ++G++    +A++ 
Sbjct: 401 NLHTYNTLICGLLRAGRIEDALKLLDTME-SVGVQPTAYTYITFIDYFGKSGETGKAVET 459

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
           F++M +  +   +   N  L      G+L   K +F  + E  ++PD+ +YN+++     
Sbjct: 460 FEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSK 519

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             ++++A  +  EM++   +P ++   +LI  L    RVDEA ++  D M+   + P   
Sbjct: 520 VGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMF-DRMKDMKLSPTVV 578

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +L+ GL   G +  A+ + E M+  K   +   +++L+    K         +  +M
Sbjct: 579 TYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKM 638

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               CKP+ +TYN +I G  KE     AF    ++  K    + ++   +L GL K G+
Sbjct: 639 TVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQL-KKSMHPDHVTICTLLPGLVKCGQ 696



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 94/209 (44%), Gaps = 8/209 (3%)

Query: 141 FQIMEKY-----VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
           +QI +K+     +SP   SYN LI   +     E AW +F +M      P   TF  L+ 
Sbjct: 772 YQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLA 831

Query: 196 GLCLELRVDEALKL-KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
                 ++ E  +L KE I R    KPD   +  +I  L     L  AL    ++V    
Sbjct: 832 VHGKSGKITELFELYKEMISR--RCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDF 889

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
                 Y  LI  L K GR  E   + +EM + GCKPN   +N LI+G+ K  D E A  
Sbjct: 890 RPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQ 949

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +   M ++G + +  SY +++  LC  G+
Sbjct: 950 LFKRMVNEGIRPDLKSYTILVDCLCLAGR 978



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/363 (21%), Positives = 147/363 (40%), Gaps = 74/363 (20%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           +I  L +A   DE  Q+  ++K D ++ P  + +  ++   G+   +++A+++F+ M   
Sbjct: 548 LIDSLYKAGRVDEAWQMFDRMK-DMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXK 606

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDA 171
                   FNTLL+      +++   ++F  M      PD  +YN +I+G +   ++  A
Sbjct: 607 KCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHA 666

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLC--------------------------------- 198
           +  F ++ K+ + P  VT  TL+ GL                                  
Sbjct: 667 FWFFHQL-KKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMG 725

Query: 199 ---LELRVDEALKLKEDIMRVYNVKPDG-------------------QVFASLIKGL--- 233
              +E  +D+A+   E+++     + D                    Q+F    K L   
Sbjct: 726 GTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGIS 785

Query: 234 -------CAVGEL------SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
                  C +GEL        A  + ++M       DA  ++ L++   K+G+  E   +
Sbjct: 786 PTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFEL 845

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            KEM  R CKP+++TYN +IS   K  + + A     ++     +  P +Y  ++ GL K
Sbjct: 846 YKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAK 905

Query: 341 DGK 343
            G+
Sbjct: 906 VGR 908



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 104/248 (41%), Gaps = 37/248 (14%)

Query: 132 GKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           G L +M  +   M K     +A SYN LIH  + S    +A +V+  MV   L+P+L T+
Sbjct: 171 GGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTY 230

Query: 191 GTLI------------------------------YGLCLEL-----RVDEALKLKEDIMR 215
             L+                              + +C+ +     ++DEA ++    M 
Sbjct: 231 SALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRR-MD 289

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
                PD   +  LI  LC  G+L  A  +  +M  +  + D  IY +L+      G  +
Sbjct: 290 DEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLD 349

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
            F     +M+  G  P+ VT+  L+   CK  DF+ AF   D M  +G   N  +YN ++
Sbjct: 350 TFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLI 409

Query: 336 GGLCKDGK 343
            GL + G+
Sbjct: 410 CGLLRAGR 417



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 134/308 (43%), Gaps = 11/308 (3%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  R +L  Y  I   L       +M  +L++++     V     +  +I    ++    
Sbjct: 151 KIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRK-AGFVLNAYSYNGLIHLLIQSGFCG 209

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-----PDACSY 155
            AL+++  M S  ++ ++K ++ L+   +  GK  R  E+  ++ K +      P+  ++
Sbjct: 210 EALEVYRRMVSEGLKPSLKTYSALM---VALGK-KRDSEMVMVLLKEMEDLGLRPNVYTF 265

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
            I I     + ++++A+++F  M      P LVT+  LI  LC   +++ A +L    M+
Sbjct: 266 TICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVK-MK 324

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
               KPD  ++ +L+      G+L        +M  D    D   ++ L+  L KA   +
Sbjct: 325 ANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFD 384

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E  A    M+++G  PN  TYN LI G  +    E A  +LD M   G +    +Y   +
Sbjct: 385 EAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFI 444

Query: 336 GGLCKDGK 343
               K G+
Sbjct: 445 DYFGKSGE 452



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 1/188 (0%)

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N ++    V  ++ED   VF+ M K+ ++  L T+ T+   L +   + +   +    MR
Sbjct: 126 NFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNK-MR 184

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
                 +   +  LI  L   G    AL V   MV + ++     YS+L+ AL K     
Sbjct: 185 KAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSE 244

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
               +LKEM++ G +PN  T+   I    +    + A+ I   M D+GC  + ++Y V++
Sbjct: 245 MVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLI 304

Query: 336 GGLCKDGK 343
             LC  G+
Sbjct: 305 DALCNAGQ 312


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 128/248 (51%), Gaps = 4/248 (1%)

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDA 152
            +ARL     +++ +M    V   +  FN L++     G +++ ++L   ME +++ PD 
Sbjct: 173 AKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDL 232

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN LI          +A  + D M +  + P +VT+ +LIYG C E R+ EAL+L  +
Sbjct: 233 FTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFRE 292

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           I       P+   + +LI G C V +L  AL ++E M  + +      Y+S++  L + G
Sbjct: 293 IN---GATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEG 349

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           +  +   +L EM ER  +P++VT N LI+ +CK  D  +A  +  +M + G K +  ++ 
Sbjct: 350 KIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFK 409

Query: 333 VILGGLCK 340
            ++ G CK
Sbjct: 410 ALIHGFCK 417



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 166/328 (50%), Gaps = 24/328 (7%)

Query: 12  PRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILH 71
            R+ +D   A+Q+F++          H  KP   +L    +++  L +A++ + + ++  
Sbjct: 140 SRMTQD---AIQVFEH-------MRVHGFKP---HLHACTVLLNSLAKARLTNMVWKVYK 186

Query: 72  QLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131
           ++     +VP   IF  +I    ++  +E+A Q+ +EM S  +   +  +NTL++  L C
Sbjct: 187 KMVR-VGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLIS--LYC 243

Query: 132 GKLDRMKELFQIMEKY----VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
            K     E   I ++     VSPD  +YN LI+G     R+ +A ++F E+      P  
Sbjct: 244 KK-GMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNH 300

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           VT+ TLI G C    ++EAL+L+E +M V  + P    + S+++ LC  G++  A  +  
Sbjct: 301 VTYTTLIDGYCRVNDLEEALRLRE-VMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLN 359

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           EM   K+E D    ++LI+A  K G       + K+M E G KP+  T+ ALI GFCK  
Sbjct: 360 EMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLH 419

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVIL 335
           + ++A   L EM D G   +  +Y+ ++
Sbjct: 420 EVDSAKEFLFEMLDAGFSPSYSTYSWLV 447



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 143/298 (47%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  ++++I    ++   ++ +Q+L++++    I P    +  +I  Y +  +   AL +
Sbjct: 196 NIHIFNVLIHACCKSGDVEKAEQLLNEME-SRFIFPDLFTYNTLISLYCKKGMHYEALGI 254

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
            D M    V   +  +N+L+      G++     LF+ +    +P+  +Y  LI G    
Sbjct: 255 QDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREING-ATPNHVTYTTLIDGYCRV 313

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             LE+A ++ + M    L P +VT+ +++  LC E ++ +A +L  + M    V+PD   
Sbjct: 314 NDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNE-MSERKVEPDNVT 372

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
             +LI   C +G++  A+ VK++M+   ++ D   + +LI    K    +     L EM 
Sbjct: 373 CNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEML 432

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + G  P+  TY+ L+  +  +++ EA   + DE+  KG   +   Y  ++  LCK  K
Sbjct: 433 DAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDK 490



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 141/312 (45%), Gaps = 8/312 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           N+ E+  + P   +L  Y+ +I+   +  M  E   I  +++    + P  + + ++I  
Sbjct: 221 NEMESRFIFP---DLFTYNTLISLYCKKGMHYEALGIQDRMERGG-VSPDIVTYNSLIYG 276

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPD 151
           + R   +  AL++F E++          + TL++       L+    L ++ME + + P 
Sbjct: 277 FCREGRMREALRLFREINGATPNHVT--YTTLIDGYCRVNDLEEALRLREVMEVEGLHPG 334

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +YN ++       +++DA ++ +EM +R+++P  VT  TLI   C    +  A+K+K+
Sbjct: 335 VVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKK 394

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            ++    +KPD   F +LI G C + E+  A     EM+          YS L+ + +  
Sbjct: 395 KMLEA-GLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQ 453

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
             K     +  E+  +G   +   Y ALI   CK +  E+A  I   M  KG K + + Y
Sbjct: 454 DNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVY 513

Query: 332 NVILGGLCKDGK 343
             +     K GK
Sbjct: 514 TSLAYAYFKAGK 525



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 113/255 (44%), Gaps = 2/255 (0%)

Query: 66  MQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125
           M++ L   +      P  + +  +I  Y R   LE AL++ + M    +   V  +N++L
Sbjct: 283 MREALRLFREINGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSIL 342

Query: 126 NPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ 184
                 GK+ D  + L ++ E+ V PD  + N LI+       +  A KV  +M++  L+
Sbjct: 343 RKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLK 402

Query: 185 PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
           P   TF  LI+G C    VD A +   +++      P    ++ L+            + 
Sbjct: 403 PDQFTFKALIHGFCKLHEVDSAKEFLFEMLDA-GFSPSYSTYSWLVDSYYDQDNKEAVIR 461

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           + +E+ R  + +D  +Y +LI  L K  +      I   M+ +G K +SV Y +L   + 
Sbjct: 462 LPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYF 521

Query: 305 KEEDFEAAFTILDEM 319
           K     AA  +LDEM
Sbjct: 522 KAGKAIAASDMLDEM 536



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 65/130 (50%)

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           MRV+  KP       L+  L      ++   V ++MVR  +  +  I++ LI A  K+G 
Sbjct: 153 MRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGD 212

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             +   +L EM+ R   P+  TYN LIS +CK+     A  I D M   G   + ++YN 
Sbjct: 213 VEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNS 272

Query: 334 ILGGLCKDGK 343
           ++ G C++G+
Sbjct: 273 LIYGFCREGR 282


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 153/303 (50%), Gaps = 5/303 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV-PKEIIFCNVIGFYGRARLLER 101
           F+ N + Y  +I   G  K+ D    I    K D R+  P   ++  +I    + +L+  
Sbjct: 160 FQLNQVSYATLIN--GVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSE 217

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIH 160
           A  +F EM+   +   V  ++TL+      GKL + +  L +++ K ++P+  +YNIL+ 
Sbjct: 218 AYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVD 277

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                 ++++A  V   M+K  ++P ++T+ TL+ G  L   V +A  +  + M +  V 
Sbjct: 278 ALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHV-FNAMSLMGVT 336

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   +  LI G C    +  AL + +EM +  +      YSSLI  L K+GR      +
Sbjct: 337 PDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDL 396

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           + EM++RG   + +TY++LI G CK    + A  + ++M D+  + N  ++ ++L GLCK
Sbjct: 397 IDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCK 456

Query: 341 DGK 343
            G+
Sbjct: 457 GGR 459



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 124/246 (50%), Gaps = 4/246 (1%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
           L+ A+ + +EM    +   V  +N L++     GK+   K +  +M K  V PD  +Y+ 
Sbjct: 250 LKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYST 309

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L+ G  +   ++ A  VF+ M    + P + T+  LI G C    VDEAL L ++ M   
Sbjct: 310 LMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKE-MHQK 368

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE-MDAGIYSSLISALFKAGRKNE 276
           N+ P    ++SLI GLC  G +     + +EM RD+ +  D   YSSLI  L K G  + 
Sbjct: 369 NMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEM-RDRGQPADVITYSSLIDGLCKNGHLDR 427

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
             A+  +MK++  +PN  T+  L+ G CK    + A  +  ++  KG   N  +YNV++ 
Sbjct: 428 AIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIN 487

Query: 337 GLCKDG 342
           G CK G
Sbjct: 488 GHCKQG 493



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 117/221 (52%), Gaps = 2/221 (0%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           ++TL++      ++ + + +F  M    V+PD  +Y ILI+G   ++ +++A  +F EM 
Sbjct: 307 YSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMH 366

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           ++ + P +VT+ +LI GLC   R+     L ++ MR      D   ++SLI GLC  G L
Sbjct: 367 QKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDE-MRDRGQPADVITYSSLIDGLCKNGHL 425

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
             A+ +  +M   +I  +   ++ L+  L K GR  +   + +++  +G   N  TYN +
Sbjct: 426 DRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVM 485

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           I+G CK+   E A T+L +M D GC  N  ++  I+  L K
Sbjct: 486 INGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFK 526



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 122/244 (50%), Gaps = 8/244 (3%)

Query: 107 DEMSSFNVQMTVKF------FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
           D +S FN  + ++       FN +L+             L   +E K + PD  + NILI
Sbjct: 42  DAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILI 101

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
           +      ++   + V  +++KR   P  VT  TLI GLCL+ +V +AL   + ++     
Sbjct: 102 NCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLL-AQGF 160

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           + +   +A+LI G+C +G+   A+ +  ++     + +  +YS++I AL K    +E   
Sbjct: 161 QLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYG 220

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +  EM  +G   + VTY+ LI GFC E   + A  +L+EM  K    N  +YN+++  LC
Sbjct: 221 LFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALC 280

Query: 340 KDGK 343
           K+GK
Sbjct: 281 KEGK 284



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 135/285 (47%), Gaps = 3/285 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LK    N+  Y++++  L +     E + +L  +     + P  I +  ++  Y     +
Sbjct: 262 LKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKAC-VKPDVITYSTLMDGYFLVYEV 320

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
           ++A  +F+ MS   V   V  +  L+N       +D    LF+ M +K + P   +Y+ L
Sbjct: 321 KKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSL 380

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I G   S R+   W + DEM  R     ++T+ +LI GLC    +D A+ L    M+   
Sbjct: 381 IDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNK-MKDQE 439

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           ++P+   F  L+ GLC  G L  A  V ++++     ++   Y+ +I+   K G   E  
Sbjct: 440 IRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEAL 499

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
            +L +M++ GC PN+ T+  +I    K+++ + A  +L +M  +G
Sbjct: 500 TMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 544


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 128/248 (51%), Gaps = 4/248 (1%)

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDA 152
            +ARL     +++ +M    V   +  FN L++     G +++ ++L   ME +++ PD 
Sbjct: 173 AKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDL 232

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN LI          +A  + D M +  + P +VT+ +LIYG C E R+ EAL+L  +
Sbjct: 233 FTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFRE 292

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
           I       P+   + +LI G C V +L  AL ++E M  + +      Y+S++  L + G
Sbjct: 293 IN---GATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEG 349

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           +  +   +L EM ER  +P++VT N LI+ +CK  D  +A  +  +M + G K +  ++ 
Sbjct: 350 KIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFK 409

Query: 333 VILGGLCK 340
            ++ G CK
Sbjct: 410 ALIHGFCK 417



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 166/328 (50%), Gaps = 24/328 (7%)

Query: 12  PRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILH 71
            R+ +D   A+Q+F++          H  KP   +L    +++  L +A++ + + ++  
Sbjct: 140 SRMTQD---AIQVFEH-------MRVHGFKP---HLHACTVLLNSLAKARLTNMVWKVYK 186

Query: 72  QLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131
           ++     +VP   IF  +I    ++  +E+A Q+ +EM S  +   +  +NTL++  L C
Sbjct: 187 KMVR-VGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLIS--LYC 243

Query: 132 GKLDRMKELFQIMEKY----VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
            K     E   I ++     VSPD  +YN LI+G     R+ +A ++F E+      P  
Sbjct: 244 KK-GMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNH 300

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           VT+ TLI G C    ++EAL+L+E +M V  + P    + S+++ LC  G++  A  +  
Sbjct: 301 VTYTTLIDGYCRVNDLEEALRLRE-VMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLN 359

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
           EM   K+E D    ++LI+A  K G       + K+M E G KP+  T+ ALI GFCK  
Sbjct: 360 EMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLH 419

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVIL 335
           + ++A   L EM D G   +  +Y+ ++
Sbjct: 420 EVDSAKEFLFEMLDAGFSPSYSTYSWLV 447



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 143/298 (47%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  ++++I    ++   ++ +Q+L++++    I P    +  +I  Y +  +   AL +
Sbjct: 196 NIHIFNVLIHACCKSGDVEKAEQLLNEME-SRFIFPDLFTYNTLISLYCKKGMHYEALGI 254

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165
            D M    V   +  +N+L+      G++     LF+ +    +P+  +Y  LI G    
Sbjct: 255 QDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREING-ATPNHVTYTTLIDGYCRV 313

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
             LE+A ++ + M    L P +VT+ +++  LC E ++ +A +L  + M    V+PD   
Sbjct: 314 NDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNE-MSERKVEPDNVT 372

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
             +LI   C +G++  A+ VK++M+   ++ D   + +LI    K    +     L EM 
Sbjct: 373 CNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEML 432

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + G  P+  TY+ L+  +  +++ EA   + DE+  KG   +   Y  ++  LCK  K
Sbjct: 433 DAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDK 490



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 141/312 (45%), Gaps = 8/312 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           N+ E+  + P   +L  Y+ +I+   +  M  E   I  +++    + P  + + ++I  
Sbjct: 221 NEMESRFIFP---DLFTYNTLISLYCKKGMHYEALGIQDRMERGG-VSPDIVTYNSLIYG 276

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPD 151
           + R   +  AL++F E++          + TL++       L+    L ++ME + + P 
Sbjct: 277 FCREGRMREALRLFREINGATPNHVT--YTTLIDGYCRVNDLEEALRLREVMEVEGLHPG 334

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +YN ++       +++DA ++ +EM +R+++P  VT  TLI   C    +  A+K+K+
Sbjct: 335 VVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKK 394

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            ++    +KPD   F +LI G C + E+  A     EM+          YS L+ + +  
Sbjct: 395 KMLEA-GLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQ 453

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
             K     +  E+  +G   +   Y ALI   CK +  E+A  I   M  KG K + + Y
Sbjct: 454 DNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVY 513

Query: 332 NVILGGLCKDGK 343
             +     K GK
Sbjct: 514 TSLAYAYFKAGK 525



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 113/255 (44%), Gaps = 2/255 (0%)

Query: 66  MQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125
           M++ L   +      P  + +  +I  Y R   LE AL++ + M    +   V  +N++L
Sbjct: 283 MREALRLFREINGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSIL 342

Query: 126 NPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ 184
                 GK+ D  + L ++ E+ V PD  + N LI+       +  A KV  +M++  L+
Sbjct: 343 RKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLK 402

Query: 185 PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
           P   TF  LI+G C    VD A +   +++      P    ++ L+            + 
Sbjct: 403 PDQFTFKALIHGFCKLHEVDSAKEFLFEMLDA-GFSPSYSTYSWLVDSYYDQDNKEAVIR 461

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           + +E+ R  + +D  +Y +LI  L K  +      I   M+ +G K +SV Y +L   + 
Sbjct: 462 LPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYF 521

Query: 305 KEEDFEAAFTILDEM 319
           K     AA  +LDEM
Sbjct: 522 KAGKAIAASDMLDEM 536



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 65/130 (50%)

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           MRV+  KP       L+  L      ++   V ++MVR  +  +  I++ LI A  K+G 
Sbjct: 153 MRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGD 212

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             +   +L EM+ R   P+  TYN LIS +CK+     A  I D M   G   + ++YN 
Sbjct: 213 VEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNS 272

Query: 334 ILGGLCKDGK 343
           ++ G C++G+
Sbjct: 273 LIYGFCREGR 282


>gi|302757523|ref|XP_002962185.1| hypothetical protein SELMODRAFT_77345 [Selaginella moellendorffii]
 gi|300170844|gb|EFJ37445.1| hypothetical protein SELMODRAFT_77345 [Selaginella moellendorffii]
          Length = 442

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 133/256 (51%), Gaps = 5/256 (1%)

Query: 84  IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQI 143
           + +  +I    +A   ++A+  F+ M +      ++ F  ++      GKL+R  E+FQ 
Sbjct: 10  VAYTAIINALFKAHRPDQAIACFERMVARKCDPDLRTFTVVITGLCKAGKLNRACEVFQE 69

Query: 144 M-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR 202
           M  K   PD   Y  L+ G   +  +++A K+  E+V R ++PT VT+ + I GLC   R
Sbjct: 70  MNRKGWKPDIIVYTSLVDGLSKASMMDEARKLLQEIVSRGMKPTEVTYTSFISGLCKNGR 129

Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
           V+EA KL  ++ ++       +V   +  G    G++  AL +K+EMV+  + +D   Y+
Sbjct: 130 VEEAGKLVREMGKMCA----AEVLHCIFGGYVLEGKIEEALALKDEMVKKGVTLDVRCYT 185

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           +LI  LF   R +E   + + M ++G  P++ TY  ++S FCK+   +AA  +++ M   
Sbjct: 186 NLIHGLFYVRRNDEAQEMFEAMVQQGYVPDTRTYGMIVSHFCKQGKMQAACKVVEIMDAA 245

Query: 323 GCKANPISYNVILGGL 338
           G +AN   YN ++ G 
Sbjct: 246 GLEANCHIYNSLMDGF 261



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 157/372 (42%), Gaps = 75/372 (20%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL--------------------------- 73
           K ++ +++ Y  ++  L +A M DE +++L ++                           
Sbjct: 73  KGWKPDIIVYTSLVDGLSKASMMDEARKLLQEIVSRGMKPTEVTYTSFISGLCKNGRVEE 132

Query: 74  -----KHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
                +   ++   E++ C + G Y     +E AL + DEM    V + V+ +  L++  
Sbjct: 133 AGKLVREMGKMCAAEVLHC-IFGGYVLEGKIEEALALKDEMVKKGVTLDVRCYTNLIHGL 191

Query: 129 LTCGKLDRMKELFQIM--EKYVSPD-------------------ACS------------- 154
               + D  +E+F+ M  + YV PD                   AC              
Sbjct: 192 FYVRRNDEAQEMFEAMVQQGYV-PDTRTYGMIVSHFCKQGKMQAACKVVEIMDAAGLEAN 250

Query: 155 ---YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC-LELRVDEALKLK 210
              YN L+ G +   R  +A  V+D M+++ + P++VT+  L+ GLC L    D  L L+
Sbjct: 251 CHIYNSLMDGFLGVNRAREAINVYDTMLRKMVMPSIVTYNILMLGLCKLGQTADARLVLR 310

Query: 211 EDIMRVYN-VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
           E  MR  + + P    + +LI GL   G    A+ V  EMV + +  D    +SLI AL 
Sbjct: 311 E--MRERDGIVPTIVSYRTLIHGLGKAGRADEAIDVFTEMVDNGVVPDCPSCTSLIQALA 368

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
            A R +E   +L++M   G  P+++ YNAL+   C       A+ +L EM D  C  +  
Sbjct: 369 MADRMDEATQLLRDMPRMGITPDALAYNALVKVLCGGAKVGPAWDVLVEMMDNSCVPDGS 428

Query: 330 SYNVILGGLCKD 341
           ++  +  G   D
Sbjct: 429 TFRAMKLGFKAD 440



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 81/157 (51%), Gaps = 4/157 (2%)

Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
           +V +  +I  L    R D+A+   E  M      PD + F  +I GLC  G+L+ A  V 
Sbjct: 9   VVAYTAIINALFKAHRPDQAIACFER-MVARKCDPDLRTFTVVITGLCKAGKLNRACEVF 67

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           +EM R   + D  +Y+SL+  L KA   +E   +L+E+  RG KP  VTY + ISG CK 
Sbjct: 68  QEMNRKGWKPDIIVYTSLVDGLSKASMMDEARKLLQEIVSRGMKPTEVTYTSFISGLCKN 127

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              E A  ++ EMG K C A  +  + I GG   +GK
Sbjct: 128 GRVEEAGKLVREMG-KMCAAEVL--HCIFGGYVLEGK 161


>gi|11079485|gb|AAG29197.1|AC078898_7 hypothetical protein [Arabidopsis thaliana]
          Length = 441

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 136/270 (50%), Gaps = 13/270 (4%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           ++ PK   + N++    R  L+E   +++ EM    V   +  FNTL+N     G +   
Sbjct: 117 KLTPK--CYNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEA 174

Query: 138 KE-LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           K+ +  +++    PD  +Y   I G    + ++ A+KVF EM +       V++  LIYG
Sbjct: 175 KQYVTWLIQAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYG 234

Query: 197 LCLELRVDEAL----KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           L    ++DEAL    K+K+D     N  P+ + +  LI  LC  G+ S A+ + ++M   
Sbjct: 235 LFEAKKIDEALSLLVKMKDD-----NCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSES 289

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
            I+ D  +Y+ LI +       +E   +L+ M E G  PN +TYNALI GFCK ++   A
Sbjct: 290 GIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMPNVITYNALIKGFCK-KNVHKA 348

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDG 342
             +L +M ++    + I+YN ++ G C  G
Sbjct: 349 MGLLSKMLEQNLVPDLITYNTLIAGQCSSG 378



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 155/337 (45%), Gaps = 26/337 (7%)

Query: 7   RLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEM 66
            ++ L  L  DP+ AL      +  PN         F++N+  Y  ++T L         
Sbjct: 29  HVSSLFSLNLDPQTALSFSDWISRIPN---------FKHNVTSYASLVTLLCS------- 72

Query: 67  QQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ--MTVKFFNTL 124
           Q+I +++   T ++ K    CN +     A  +    +   +  SF ++  +T K +N L
Sbjct: 73  QEIPYEVPKITILMIKS---CNSVR---DALFVVDFCRTMRKGDSFEIKYKLTPKCYNNL 126

Query: 125 LNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
           L+     G ++ MK L+ +++E  VSPD  ++N L++G      + +A +    +++   
Sbjct: 127 LSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQAGC 186

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
            P   T+ + I G C    VD A K+ ++ M       +   +  LI GL    ++  AL
Sbjct: 187 DPDYFTYTSFITGHCRRKEVDAAFKVFKE-MTQNGCHRNEVSYTQLIYGLFEAKKIDEAL 245

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            +  +M  D    +   Y+ LI AL  +G+K+E   + K+M E G KP+   Y  LI  F
Sbjct: 246 SLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSF 305

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           C  +  + A  +L+ M + G   N I+YN ++ G CK
Sbjct: 306 CSGDTLDEASGLLEHMLENGLMPNVITYNALIKGFCK 342



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 6/141 (4%)

Query: 209 LKEDIMRVYN------VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
           L E++ R+Y       V PD   F +L+ G C +G +  A      +++   + D   Y+
Sbjct: 135 LVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQAGCDPDYFTYT 194

Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           S I+   +    +    + KEM + GC  N V+Y  LI G  + +  + A ++L +M D 
Sbjct: 195 SFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDD 254

Query: 323 GCKANPISYNVILGGLCKDGK 343
            C  N  +Y V++  LC  G+
Sbjct: 255 NCCPNVRTYTVLIDALCGSGQ 275


>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 141/297 (47%), Gaps = 41/297 (13%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
           VP  I +  ++     A  +E A  M   +   NV +    FNT++   L  GKL    E
Sbjct: 274 VPNAITYGFLLKGLCLASQVEEARTMLGRVPELNVVL----FNTVIGRCLLDGKLKEAAE 329

Query: 140 LFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
           L++ M  K   PDA +Y+ILIHG     RL  A K+  EM  +   P++VT+  L++  C
Sbjct: 330 LYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFC 389

Query: 199 -----------LEL------------------------RVDEALKLKEDIMRVYNVKPDG 223
                      LE+                        R+D+A++  ++ M+    KPD 
Sbjct: 390 RNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQE-MKSQGYKPDI 448

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             + ++I  LC   ++  A  + E ++ + +  +A  Y++LI AL + G   +  ++  +
Sbjct: 449 CTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLAND 508

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           M   GC  + V+YN LI   C++ + + +  +L EM +KG K N +SYN+++  LCK
Sbjct: 509 MVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCK 565



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 124/245 (50%), Gaps = 2/245 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
           L  A+++  EM       ++  +  LL+     G  D ++ + ++M +K +S +   YN 
Sbjct: 359 LGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNG 418

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I      RR++DA +   EM  +  +P + T+ T+IY LC   +++EA  L E+++   
Sbjct: 419 MICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLH-E 477

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            V  +   + +LI  L   G    A+ +  +MV     +D   Y+ LI AL + G  +  
Sbjct: 478 GVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRS 537

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +L EM E+G KPN+V+YN LIS  CK      A  +  EM ++    + ++YN ++ G
Sbjct: 538 IMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLING 597

Query: 338 LCKDG 342
           LCK G
Sbjct: 598 LCKMG 602



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 135/296 (45%), Gaps = 8/296 (2%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ ++    RA    ++  +  ++ H  R+ P    F        R    + AL M   M
Sbjct: 139 YNTVLAAFARADCHTDVLSLYRRMVHRDRVPPTTFTFSIAARALCRLGRADEALTMLRSM 198

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
           +          + T+++     G ++    L  ++     S D  ++N ++HG     RL
Sbjct: 199 ARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVHGLCTLGRL 258

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +A ++ D M+ R   P  +T+G L+ GLCL  +V+EA  +   +  + NV     V  +
Sbjct: 259 REAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTMLGRVPEL-NV-----VLFN 312

Query: 229 LIKGLCAV-GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            + G C + G+L  A  + E M       DA  YS LI  L K GR      +L+EM+++
Sbjct: 313 TVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDK 372

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           G  P+ VTY  L+  FC+   ++    +L+ M DKG   N   YN ++  +CKD +
Sbjct: 373 GFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRR 428



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 143/295 (48%), Gaps = 9/295 (3%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I  L +        ++L +++ D    P  + +  ++  + R  + +    M + M
Sbjct: 346 YSILIHGLCKLGRLGSAMKLLREME-DKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVM 404

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHGCVVS 165
           S   + M ++ +N ++       K  RM +  + M++  S    PD C+YN +I+    +
Sbjct: 405 SDKGLSMNLEGYNGMI---CAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNN 461

Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
            ++E+A  +F+ ++   +    +T+ TLI+ L       +A+ L  D M ++    D   
Sbjct: 462 NQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLAND-MVLHGCSLDIVS 520

Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
           +  LIK LC  G +  ++ +  EM    I+ +   Y+ LIS L K  R  +   + KEM 
Sbjct: 521 YNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEML 580

Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            +   P+ VTYN LI+G CK     AA  +L+++ ++   A+ I+YN+++   CK
Sbjct: 581 NQELTPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDVHADIITYNILISWHCK 635



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 143/330 (43%), Gaps = 20/330 (6%)

Query: 15  QKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 74
             DP+ AL L ++  P+        + P R +LL        L R+        +L QL 
Sbjct: 81  NADPERALFLLESLPPSR-------VPPLRESLL------IPLFRSLAPGRALHLLDQLP 127

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFN-VQMTVKFFNTLLNPKLTCGK 133
           H   + P    +  V+  + RA      L ++  M   + V  T   F+         G+
Sbjct: 128 HRFAVSPSFRSYNTVLAAFARADCHTDVLSLYRRMVHRDRVPPTTFTFSIAARALCRLGR 187

Query: 134 LDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
            D    + + M ++   PD   Y  +IH       + +A  + DEM        + TF  
Sbjct: 188 ADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFND 247

Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
           +++GLC   R+ EA +L  D M +    P+   +  L+KGLC   ++  A      M+  
Sbjct: 248 IVHGLCTLGRLREAARLV-DRMMIRGCVPNAITYGFLLKGLCLASQVEEA----RTMLGR 302

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
             E++  +++++I      G+  E   + + M  +GC P++ TY+ LI G CK     +A
Sbjct: 303 VPELNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSA 362

Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDG 342
             +L EM DKG   + ++Y ++L   C++G
Sbjct: 363 MKLLREMEDKGFAPSIVTYTILLHSFCRNG 392



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 144/302 (47%), Gaps = 15/302 (4%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYG------ 94
           K F  +++ Y +++    R  M+D ++ +L        ++  + +  N+ G+ G      
Sbjct: 372 KGFAPSIVTYTILLHSFCRNGMWDNIRAML-------EVMSDKGLSMNLEGYNGMICAVC 424

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDAC 153
           + R ++ A++   EM S   +  +  +NT++       +++  + LF+ ++ + V  +A 
Sbjct: 425 KDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAI 484

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YN LIH  + +   +DA  + ++MV       +V++  LI  LC +  VD ++ L  + 
Sbjct: 485 TYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSE- 543

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M    +KP+   +  LI  LC    +  AL + +EM+  ++  D   Y++LI+ L K G 
Sbjct: 544 MAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGW 603

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +    +L+++       + +TYN LIS  CK      A  +L+     G   N  ++ +
Sbjct: 604 MHAALNLLEKLHNEDVHADIITYNILISWHCKARLLHDASMLLNRAVTSGITPNERTWGI 663

Query: 334 IL 335
           ++
Sbjct: 664 MV 665



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 119/268 (44%), Gaps = 3/268 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K    NL  Y+ +I  + + +  D+  + + ++K      P    +  +I        +E
Sbjct: 407 KGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQG-YKPDICTYNTIIYHLCNNNQME 465

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
            A  +F+ +    V      +NTL++  L  G       L   M  +  S D  SYN LI
Sbjct: 466 EAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLI 525

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
                   ++ +  +  EM ++ ++P  V++  LI  LC   RV +AL+L ++++    +
Sbjct: 526 KALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLN-QEL 584

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            PD   + +LI GLC +G +  AL + E++  + +  D   Y+ LIS   KA   ++   
Sbjct: 585 TPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDVHADIITYNILISWHCKARLLHDASM 644

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEE 307
           +L      G  PN  T+  ++  F ++ 
Sbjct: 645 LLNRAVTSGITPNERTWGIMVQNFVRKS 672



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 7/156 (4%)

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPD----GQVFASLIKGLCAVGELSLALGVKE 247
           +L+  L   L    AL L + +   + V P       V A+  +  C    LSL    + 
Sbjct: 105 SLLIPLFRSLAPGRALHLLDQLPHRFAVSPSFRSYNTVLAAFARADCHTDVLSL---YRR 161

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
            + RD++      +S    AL + GR +E   +L+ M   GC P++V Y  +I   C + 
Sbjct: 162 MVHRDRVPPTTFTFSIAARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQG 221

Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               A T+LDEM   GC A+  ++N I+ GLC  G+
Sbjct: 222 GVNEAATLLDEMFLMGCSADVNTFNDIVHGLCTLGR 257


>gi|255660926|gb|ACU25632.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 484

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 172/338 (50%), Gaps = 16/338 (4%)

Query: 18  PKLALQLFKNPNPNPNDTEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQ 68
           P    +L  N      ++E H L+ FR+    NL  ++      II  LGRA   +  + 
Sbjct: 8   PSFDHELVYNVLHGAKNSE-HALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARC 66

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           IL  +     +   E ++  +I  YG+  +++ ++++F +M    V+ T+K ++ L    
Sbjct: 67  ILLDMPKKG-LEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKVI 125

Query: 129 LTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
           +  G+    K  F +++ + + P   ++N++I G  +S ++E A + F++M  R + P +
Sbjct: 126 MRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDV 185

Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           +T+ T+I G C   +++EA K   + M+  N++P    + +LIKG  +V ++  AL + E
Sbjct: 186 ITYNTMINGYCRVKKMEEAEKYFVE-MKGKNIEPTVVTYTTLIKGYVSVDQVDDALRLVE 244

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCK 305
           EM    I+ +A  YS+L+  L  A + +E  +ILKEM ++   P  NS+ +  LIS  CK
Sbjct: 245 EMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTDNSI-FMRLISSHCK 303

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             + +AA  +L  M           Y V++   CK G+
Sbjct: 304 VGNLDAAADVLKAMIRLSVPTEAGHYGVLIENYCKAGQ 341



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 130/263 (49%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F++M S  +   V  +NT++N      K++  ++ F  M+ K 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDMKSREISPDVITYNTMINGYCRVKKMEEAEKYFVEMKGKN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   +++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + ++++  Y    D  +F  LI   C VG L  A  V + M+R  +  +AG Y  LI  
Sbjct: 276 SILKEMVDKYIAPTDNSIFMRLISSHCKVGNLDAAADVLKAMIRLSVPTEAGHYGVLIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERG--CKPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             KAG+ ++   +L ++ E+    +P S        YN ++   C       A  ++ ++
Sbjct: 336 YCKAGQYDQAVKLLDKLIEKDIIVRPQSTLHMEPSAYNPIVEYLCNNGQTSKAEALVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +P + N ++ G  ++G
Sbjct: 396 MKLGVQ-DPTALNTLIRGHSQEG 417



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 126/285 (44%), Gaps = 45/285 (15%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  I +  +I  Y R + +E A + F EM   N++ TV  + TL+   ++  ++D   
Sbjct: 181 ISPDVITYNTMINGYCRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT-FGTLIYG 196
            L + M+ Y + P+A +Y+ L+ G   + ++ +A  +  EMV + + PT  + F  LI  
Sbjct: 241 RLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMRLISS 300

Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI-- 254
            C    +D A  + + ++R+ +V  +   +  LI+  C  G+   A+ + ++++   I  
Sbjct: 301 HCKVGNLDAAADVLKAMIRL-SVPTEAGHYGVLIENYCKAGQYDQAVKLLDKLIEKDIIV 359

Query: 255 ------EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK-----------------P 291
                  M+   Y+ ++  L   G+ ++  A+++++ + G +                 P
Sbjct: 360 RPQSTLHMEPSAYNPIVEYLCNNGQTSKAEALVRQLMKLGVQDPTALNTLIRGHSQEGSP 419

Query: 292 NSV-----------------TYNALISGFCKEEDFEAAFTILDEM 319
           +S                   Y++L+  + K+ +   A   LD M
Sbjct: 420 DSAFELLKIMLRRKVDSEKSAYDSLVQSYLKKSEPADAKAALDSM 464


>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 418

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 131/244 (53%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++  Y R   L+   ++   M +  VQ  V  ++ L+N      K+D   EL
Sbjct: 169 PSVVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANEL 228

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F ++++  + P+  ++  LI G   + R++ A +++ +++ +   P L+T+ TLI+GLC 
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCK 288

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           +  + +A  L ++ M +  +KPD   + +LI G C  G+L  A   ++ M+++ I +D  
Sbjct: 289 KGDLKQARDLIDE-MSMKELKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDV 347

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LIS L + GR  +   +L+ M   G KP++ TY  +I+ FCK+ D +    +L EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLRGMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEM 407

Query: 320 GDKG 323
              G
Sbjct: 408 XRDG 411



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 122/228 (53%), Gaps = 2/228 (0%)

Query: 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVF 175
           ++ FFN L++     G++   + +F  + K+ + P   S+N L+ G +    L++ +++ 
Sbjct: 135 SLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFRLK 194

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
             M    +QP + T+  LI GLC E ++DEA +L  +++    + P+G  F +LI G C 
Sbjct: 195 SAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLD-NGLVPNGVTFTTLIDGHCK 253

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
            G + LA+ + ++++      D   Y++LI  L K G   +   ++ EM  +  KP+ +T
Sbjct: 254 NGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKIT 313

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y  LI G CKE D E AF     M  +  + + ++Y  ++ GLC++G+
Sbjct: 314 YTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGR 361



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 133/267 (49%), Gaps = 9/267 (3%)

Query: 81  PKEIIFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           P  + F N++       G  RL   A  +FD ++ + ++ +V  FNTL++  +  G LD 
Sbjct: 133 PASLYFFNILMHRFCKEGEMRL---AQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDE 189

Query: 137 MKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
              L   M    V PD  +Y++LI+G     ++++A ++F+EM+   L P  VTF TLI 
Sbjct: 190 GFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLID 249

Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
           G C   RVD A+++ + ++      PD   + +LI GLC  G+L  A  + +EM   +++
Sbjct: 250 GHCKNGRVDLAMEIYKQLLS-QGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELK 308

Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
            D   Y++LI    K G         K M +   + + V Y ALISG C+E     A  +
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 316 LDEMGDKGCKANPISYNVILGGLCKDG 342
           L  M   G K +  +Y +I+   CK G
Sbjct: 369 LRGMLSVGLKPDNGTYTMIINEFCKKG 395



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 108/222 (48%), Gaps = 2/222 (0%)

Query: 75  HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
           H + + P    +  +I    +   ++ A ++F+EM    +      F TL++     G++
Sbjct: 198 HASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRV 257

Query: 135 DRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
           D   E++ Q++ +  SPD  +YN LI G      L+ A  + DEM  + L+P  +T+ TL
Sbjct: 258 DLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTTL 317

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I G C E  ++ A + ++ +++  N++ D   + +LI GLC  G    A  +   M+   
Sbjct: 318 IDGSCKEGDLETAFEYRKRMIK-ENIRLDDVAYTALISGLCQEGRSVDAEKMLRGMLSVG 376

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
           ++ D G Y+ +I+   K G       +LKEM   G  P  VT
Sbjct: 377 LKPDNGTYTMIINEFCKKGDVKTGSKLLKEMXRDGHVPCVVT 418



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 50/103 (48%)

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
           L  G  +E++          ++ L+    K G      ++   + + G +P+ V++N L+
Sbjct: 119 LVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLM 178

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           SG+ +  D +  F +   M   G + +  +Y+V++ GLCK+ K
Sbjct: 179 SGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESK 221


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 138/274 (50%), Gaps = 5/274 (1%)

Query: 71  HQLKHDTRIVPKEIIFCNV-IGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL 129
           + +KH  +I P +I   N+ I  +     L  AL  F +++      T+  FNTLL+   
Sbjct: 3   NNIKHGLQI-PCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHG-- 59

Query: 130 TCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
            C + DR+ E   +  +   P+  ++  L++G     R+ +A  + D MV+  LQP  +T
Sbjct: 60  LCVE-DRVSEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQIT 118

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           +GT++ G+C       AL L   +  + ++KPD  +++++I GL   G  + A  +  EM
Sbjct: 119 YGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEM 178

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
               I  D   YS +I+    +G+ +E   +L+EM  R   P+ VT++ LI+   KE D 
Sbjct: 179 QDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDL 238

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +A  +L EM   G   N ++ N +L GLC  GK
Sbjct: 239 NSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGK 272



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 150/312 (48%), Gaps = 17/312 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQ--QILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERA 102
           N + Y  I+   G  KM D +    +L +++  + I P  +I+  +I G +   R  + A
Sbjct: 115 NQITYGTIVD--GMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTD-A 171

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHG 161
             +F EM    +   +  ++ ++N   + GK    + L Q ++ + +SPD  +++ LI+ 
Sbjct: 172 QNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINA 231

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE---------D 212
            V    L  A  +  EM+   + P +VT  TL+ GLC   ++ +AL++ +         D
Sbjct: 232 LVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDID 291

Query: 213 IMRVYN-VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
               +N V+PD Q +  LI GL   G+   A  + EEM    I  D   YSS+I+ L K 
Sbjct: 292 ATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQ 351

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
            R +E   +   M  +   PN VT+N LI+G+CK    +    +  EMG +G  AN I+Y
Sbjct: 352 SRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITY 411

Query: 332 NVILGGLCKDGK 343
             ++ G  K G 
Sbjct: 412 ITLIRGFRKVGN 423



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 138/286 (48%), Gaps = 14/286 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I     +  + E Q++L ++    +I P  + F  +I    +   L  A  +
Sbjct: 186 DIVTYSCMINGFCSSGKWSEAQRLLQEMLV-RKISPDVVTFSGLINALVKEGDLNSAQDL 244

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY------------VSPDAC 153
             EM S  V   V   NTLL+     GKL    E+F+ M+K             V PD  
Sbjct: 245 LQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQ 304

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YNILI G +   +  +A ++++EM  R + P  VT+ ++I GLC + R+DEA ++  D 
Sbjct: 305 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMF-DS 363

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M   +  P+   F +LI G C  G +   L +  EM R  I  +A  Y +LI    K G 
Sbjct: 364 MGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGN 423

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            N    I +EM   G  P+++T   +++G   +E+ + A  +L+E+
Sbjct: 424 INGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRALAMLEEL 469



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 140/314 (44%), Gaps = 25/314 (7%)

Query: 54  ITKLGRAKMFDEMQQILHQLKHDTRIV-----------PKEIIFCNVIGFYGRARLLERA 102
           +TKLG          +LH L  + R+            P  + F  ++    R   +  A
Sbjct: 41  LTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEA 100

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYNILIH 160
           + + D M    +Q     + T+++     G       L + ME+  ++ PD   Y+ +I 
Sbjct: 101 VALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIID 160

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     R  DA  +F EM  + + P +VT+  +I G C   +  EA +L ++ M V  + 
Sbjct: 161 GLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQE-MLVRKIS 219

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE---- 276
           PD   F+ LI  L   G+L+ A  + +EM+   +  +    ++L+  L  +G+  +    
Sbjct: 220 PDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEM 279

Query: 277 FPAILKEMKE-------RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           F A+ K M +        G +P+  TYN LISG   E  F  A  + +EM  +G   + +
Sbjct: 280 FKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTV 339

Query: 330 SYNVILGGLCKDGK 343
           +Y+ ++ GLCK  +
Sbjct: 340 TYSSMINGLCKQSR 353



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 143/312 (45%), Gaps = 16/312 (5%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF-CNVIGFYGRARL 98
           L   + +++ Y  II  L +     + Q +  +++ D  I P  + + C + GF    + 
Sbjct: 145 LSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQ-DKGIFPDIVTYSCMINGFCSSGKW 203

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNI 157
            E A ++  EM    +   V  F+ L+N  +  G L+  ++L Q ++   V P+  + N 
Sbjct: 204 SE-AQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNT 262

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRL-----------QPTLVTFGTLIYGLCLELRVDEA 206
           L+ G   S +L+DA ++F  M K  +           +P + T+  LI GL  E +  EA
Sbjct: 263 LLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEA 322

Query: 207 LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266
            +L E+ M    + PD   ++S+I GLC    L  A  + + M       +   +++LI+
Sbjct: 323 EELYEE-MPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLIT 381

Query: 267 ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326
              KAG  ++   +  EM  RG   N++TY  LI GF K  +   +  I  EM   G   
Sbjct: 382 GYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYP 441

Query: 327 NPISYNVILGGL 338
           + I+   +L GL
Sbjct: 442 DTITIRNMLTGL 453



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 103/191 (53%), Gaps = 3/191 (1%)

Query: 97  RLLERALQMFDEMSSFN-VQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACS 154
           + +++++   D   +FN V+  V+ +N L++  +  GK    +EL++ M  + + PD  +
Sbjct: 281 KAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVT 340

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           Y+ +I+G     RL++A ++FD M  +   P +VTF TLI G C    VD+ L+L  ++ 
Sbjct: 341 YSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMG 400

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           R   +  +   + +LI+G   VG ++ +L + +EM+   +  D     ++++ L+     
Sbjct: 401 R-RGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 459

Query: 275 NEFPAILKEMK 285
               A+L+E++
Sbjct: 460 KRALAMLEELQ 470


>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Glycine max]
          Length = 836

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 143/284 (50%), Gaps = 11/284 (3%)

Query: 61  KMFDEMQQILHQLKHDTRIVPKEIIF--CNVIGFYGRARLLERALQMFDEMSSFNVQMTV 118
           ++F+ ++Q+L +     RI    +IF  C     +G+   +E A ++ +EM     Q   
Sbjct: 519 EVFEVLKQMLEKGLLLDRISYNTLIFGCCK----WGK---IEEAFKLKEEMVQQEFQPDT 571

Query: 119 KFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
             +N L+      GK+D +  L    ++Y   P+  +Y +L+ G   + R+EDA K F  
Sbjct: 572 YTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKN 631

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           +   +++ + V +  LI   C    V EA KL+ D M+   + P    ++SLI G+C +G
Sbjct: 632 LDYEKVELSSVVYNILIAAYCRIGNVTEAFKLR-DAMKSRGILPTCATYSSLIHGMCCIG 690

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
            +  A  + EEM  + +  +   Y++LI    K G+ +   +IL EM   G +PN +TY 
Sbjct: 691 RVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYT 750

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            +I G+CK  + + A  +L+EM   G   + ++YN +  G CK+
Sbjct: 751 IMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNALQKGYCKE 794



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 121/228 (53%), Gaps = 7/228 (3%)

Query: 122 NTLLNPKLTCGKLDR--MKELF----QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVF 175
           NT+ +  L  G  +R  M+E+F    Q++EK +  D  SYN LI GC    ++E+A+K+ 
Sbjct: 500 NTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLK 559

Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
           +EMV++  QP   T+  L+ GL    ++D+  +L  +  + Y   P+   +A L++G C 
Sbjct: 560 EEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHE-AKEYGFVPNVYTYALLLEGYCK 618

Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
              +  A+   + +  +K+E+ + +Y+ LI+A  + G   E   +   MK RG  P   T
Sbjct: 619 ADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCAT 678

Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           Y++LI G C     + A  I +EM ++G   N   Y  ++GG CK G+
Sbjct: 679 YSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQ 726



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 8/226 (3%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFD 176
           +NTL+     C K  +++E F++ E+ V     PD  +YN L+ G     +++D  ++  
Sbjct: 539 YNTLI---FGCCKWGKIEEAFKLKEEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLH 595

Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236
           E  +    P + T+  L+ G C   R+++A+K  ++ +    V+    V+  LI   C +
Sbjct: 596 EAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKN-LDYEKVELSSVVYNILIAAYCRI 654

Query: 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296
           G ++ A  +++ M    I      YSSLI  +   GR +E   I +EM+  G  PN   Y
Sbjct: 655 GNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCY 714

Query: 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            ALI G CK    +   +IL EM   G + N I+Y +++ G CK G
Sbjct: 715 TALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLG 760



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 94/188 (50%), Gaps = 2/188 (1%)

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           N+L+   V +  L  +++VFD +  + + P + TF T I   C   RV +A+ L    M 
Sbjct: 225 NLLLSSLVKANELHKSYEVFD-LACQGVAPDVFTFTTAINAFCKGGRVGDAVDLFCK-ME 282

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
              V P+   + ++I GL   G    AL  K+ MVR K+      Y  LIS L K     
Sbjct: 283 GLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFE 342

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E   +L EM   G  PN V +NALI G+C++ D   A  + DEM  KG K N +++N +L
Sbjct: 343 EANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLL 402

Query: 336 GGLCKDGK 343
            G C+  +
Sbjct: 403 QGFCRSNQ 410



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 123/267 (46%), Gaps = 3/267 (1%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           + P  + + NVI    ++   E AL+  D M    V  +V  +  L++  +     +   
Sbjct: 286 VFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEAN 345

Query: 139 E-LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           E L ++     +P+   +N LI G      + +A +V DEM  + ++P  VTF TL+ G 
Sbjct: 346 EVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGF 405

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C   ++++A ++   I+    +  +  V + +I  L        AL +  +++   I + 
Sbjct: 406 CRSNQMEQAEQVLVYILSS-GLSVNMDVCSYVIHRLMERSGFVSALKIVTKLLSGNIRVS 464

Query: 258 AGIYSSLISALFKA-GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
             + + L+  L K  G         K    +G   N+VT NAL+ G C+  + E  F +L
Sbjct: 465 DSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNALLHGLCERGNMEEVFEVL 524

Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
            +M +KG   + ISYN ++ G CK GK
Sbjct: 525 KQMLEKGLLLDRISYNTLIFGCCKWGK 551



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 144/298 (48%), Gaps = 6/298 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y ++I+ L + +MF+E  ++L ++ +     P E++F  +I  Y R   +  AL++
Sbjct: 324 SVVTYGVLISGLMKLEMFEEANEVLVEM-YSMGFAPNEVVFNALIDGYCRKGDMGEALRV 382

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEK--YVSPDACSYNILIHGC 162
            DEM+   ++     FNTLL       ++++ ++ L  I+     V+ D CSY  +IH  
Sbjct: 383 RDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSY--VIHRL 440

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
           +       A K+  +++   ++ +      L+ GLC      EA++L   +  V  +  +
Sbjct: 441 MERSGFVSALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAAN 500

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
                +L+ GLC  G +     V ++M+   + +D   Y++LI    K G+  E   + +
Sbjct: 501 TVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKE 560

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           EM ++  +P++ TYN L+ G       +    +L E  + G   N  +Y ++L G CK
Sbjct: 561 EMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCK 618



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 38  HPLKPFRY--NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           H  K + +  N+  Y L++    +A   ++  +    L ++ ++    +++  +I  Y R
Sbjct: 595 HEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLDYE-KVELSSVVYNILIAAYCR 653

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACS 154
              +  A ++ D M S  +  T   +++L++     G++D  KE+F+ M  + + P+   
Sbjct: 654 IGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFC 713

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           Y  LI G     +++    +  EM    ++P  +T+  +I G C    + EA +L  +++
Sbjct: 714 YTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMI 773

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLAL 243
           R   + PD   + +L KG C   EL++ L
Sbjct: 774 R-NGIAPDTVTYNALQKGYCKERELTVTL 801


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 138/274 (50%), Gaps = 5/274 (1%)

Query: 71  HQLKHDTRIVPKEIIFCNV-IGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL 129
           + +KH  +I P +I   N+ I  +     L  AL  F +++      T+  FNTLL+   
Sbjct: 3   NNIKHGLQI-PCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHG-- 59

Query: 130 TCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
            C + DR+ E   +  +   P+  ++  L++G     R+ +A  + D MV+  LQP  +T
Sbjct: 60  LCVE-DRVSEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQIT 118

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           +GT++ G+C       AL L   +  + ++KPD  +++++I GL   G  + A  +  EM
Sbjct: 119 YGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEM 178

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
               I  D   YS +I+    +G+ +E   +L+EM  R   P+ VT++ LI+   KE D 
Sbjct: 179 QDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDL 238

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +A  +L EM   G   N ++ N +L GLC  GK
Sbjct: 239 NSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGK 272



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 150/312 (48%), Gaps = 17/312 (5%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQ--QILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERA 102
           N + Y  I+   G  KM D +    +L +++  + I P  +I+  +I G +   R  + A
Sbjct: 115 NQITYGTIVD--GMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTD-A 171

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHG 161
             +F EM    +   +  ++ ++N   + GK    + L Q ++ + +SPD  +++ LI+ 
Sbjct: 172 QNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINA 231

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE---------D 212
            V    L  A  +  EM+   + P +VT  TL+ GLC   ++ +AL++ +         D
Sbjct: 232 LVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDID 291

Query: 213 IMRVYN-VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
               +N V+PD Q +  LI GL   G+   A  + EEM    I  D   YSS+I+ L K 
Sbjct: 292 ATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQ 351

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
            R +E   +   M  +   PN VT+N LI+G+CK    +    +  EMG +G  AN I+Y
Sbjct: 352 SRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITY 411

Query: 332 NVILGGLCKDGK 343
             ++ G  K G 
Sbjct: 412 ITLIRGFRKVGN 423



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 138/286 (48%), Gaps = 14/286 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I     +  + E Q++L ++    +I P  + F  +I    +   L  A  +
Sbjct: 186 DIVTYSCMINGFCSSGKWSEAQRLLQEMLV-RKISPDVVTFSGLINALVKEGDLNSAQDL 244

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY------------VSPDAC 153
             EM S  V   V   NTLL+     GKL    E+F+ M+K             V PD  
Sbjct: 245 LQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQ 304

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +YNILI G +   +  +A ++++EM  R + P  VT+ ++I GLC + R+DEA ++  D 
Sbjct: 305 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMF-DS 363

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M   +  P+   F +LI G C  G +   L +  EM R  I  +A  Y +LI    K G 
Sbjct: 364 MGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGN 423

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            N    I +EM   G  P+++T   +++G   +E+ + A  +L+E+
Sbjct: 424 INGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKKALAMLEEL 469



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 140/314 (44%), Gaps = 25/314 (7%)

Query: 54  ITKLGRAKMFDEMQQILHQLKHDTRIV-----------PKEIIFCNVIGFYGRARLLERA 102
           +TKLG          +LH L  + R+            P  + F  ++    R   +  A
Sbjct: 41  LTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEA 100

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYNILIH 160
           + + D M    +Q     + T+++     G       L + ME+  ++ PD   Y+ +I 
Sbjct: 101 VALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIID 160

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     R  DA  +F EM  + + P +VT+  +I G C   +  EA +L ++ M V  + 
Sbjct: 161 GLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQE-MLVRKIS 219

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE---- 276
           PD   F+ LI  L   G+L+ A  + +EM+   +  +    ++L+  L  +G+  +    
Sbjct: 220 PDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEM 279

Query: 277 FPAILKEMKE-------RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           F A+ K M +        G +P+  TYN LISG   E  F  A  + +EM  +G   + +
Sbjct: 280 FKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTV 339

Query: 330 SYNVILGGLCKDGK 343
           +Y+ ++ GLCK  +
Sbjct: 340 TYSSMINGLCKQSR 353



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 143/312 (45%), Gaps = 16/312 (5%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF-CNVIGFYGRARL 98
           L   + +++ Y  II  L +     + Q +  +++ D  I P  + + C + GF    + 
Sbjct: 145 LSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQ-DKGIFPDIVTYSCMINGFCSSGKW 203

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNI 157
            E A ++  EM    +   V  F+ L+N  +  G L+  ++L Q ++   V P+  + N 
Sbjct: 204 SE-AQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNT 262

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRL-----------QPTLVTFGTLIYGLCLELRVDEA 206
           L+ G   S +L+DA ++F  M K  +           +P + T+  LI GL  E +  EA
Sbjct: 263 LLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEA 322

Query: 207 LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266
            +L E+ M    + PD   ++S+I GLC    L  A  + + M       +   +++LI+
Sbjct: 323 EELYEE-MPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLIT 381

Query: 267 ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326
              KAG  ++   +  EM  RG   N++TY  LI GF K  +   +  I  EM   G   
Sbjct: 382 GYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYP 441

Query: 327 NPISYNVILGGL 338
           + I+   +L GL
Sbjct: 442 DTITIRNMLTGL 453



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 104/191 (54%), Gaps = 3/191 (1%)

Query: 97  RLLERALQMFDEMSSFN-VQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACS 154
           + +++++   D   +FN V+  V+ +N L++  +  GK    +EL++ M  + + PD  +
Sbjct: 281 KAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVT 340

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           Y+ +I+G     RL++A ++FD M  +   P +VTF TLI G C    VD+ L+L  ++ 
Sbjct: 341 YSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMG 400

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           R   +  +   + +LI+G   VG ++ +L + +EM+   +  D     ++++ L+     
Sbjct: 401 R-RGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 459

Query: 275 NEFPAILKEMK 285
            +  A+L+E++
Sbjct: 460 KKALAMLEELQ 470


>gi|255561325|ref|XP_002521673.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539064|gb|EEF40660.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 341

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 146/308 (47%), Gaps = 5/308 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR--ARL 98
           K ++ N   Y L+I KL +AK FD ++ I+ ++K +         F NVI  YG    R+
Sbjct: 24  KDYKPNEALYTLVINKLAQAKNFDAIEDIMQRIKLEKSCRLSNGFFYNVIKIYGHLAGRI 83

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
                 +FD    +N    VK FN +LN  ++    D + E+++      V  DAC  NI
Sbjct: 84  KVAIDTLFDMPRGYNCWPDVKTFNLVLNLLVSARIFDVVHEIYEKAPILGVEIDACCLNI 143

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI G   +  LE A+ V DE  K+R +P + TF TL++ LC +  V++A  L  D M   
Sbjct: 144 LIKGLCENGDLEAAFYVLDEFPKQRCKPNVRTFSTLMHYLCAKGEVNQAFGLL-DRMENE 202

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            ++ D   F  LI GL   G +   + +  +M     E +AG Y  ++  L  AG+ +E 
Sbjct: 203 GIEVDTITFNILISGLRKRGRIEEGMELLVKMKLKGCEPNAGSYQEVLYGLLDAGKFSEA 262

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
              +  M   G  P+ V+Y  LI G CKE+       +L +M  +G       +  I+G 
Sbjct: 263 KDFMDRMVCEGNGPSFVSYKKLIDGLCKEKLIGEVDCVLKQMLKQGFVPKMGMWKHIVGS 322

Query: 338 -LCKDGKC 344
            L + G C
Sbjct: 323 MLSESGDC 330


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 167/401 (41%), Gaps = 78/401 (19%)

Query: 18  PKLALQLFKNPNPNPN-----DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ 72
           PK+   + +NP PNP         A   K FR      DLI   L      +   Q L  
Sbjct: 59  PKIVTSIIQNP-PNPQLGFRFFIWASNFKRFR-AWESCDLITDLLINQNGLELYCQTLEA 116

Query: 73  LKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP----- 127
           LK+    V  +  F  +I  Y +  L ++A++ F  M  F+    V  +N +L+      
Sbjct: 117 LKNGGIKVHNDAFFV-LIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKN 175

Query: 128 -------------KLTC-----------------GKLDRMKELF-QIMEKYVSPDACSYN 156
                        KL C                 G +     LF ++ ++ + PDA +Y 
Sbjct: 176 FLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYC 235

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL------- 209
           ++I G   S+R++DA+++FD+M    + P  VT   L+ G C+  RVDEA  L       
Sbjct: 236 VVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKD 295

Query: 210 ---------------------KEDIMRVY------NVKPDGQVFASLIKGLCAVGELSLA 242
                                 ED+  +Y      NVKPD  ++  ++KGL   G++  A
Sbjct: 296 GYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDA 355

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
           L +  EM    +  D   Y+ LI      G  +E  ++  E+    C PN  TY+ LISG
Sbjct: 356 LELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISG 415

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            C+      A  I +EM   GC  + +++N ++ GLCK G+
Sbjct: 416 MCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQ 456



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 129/260 (49%), Gaps = 12/260 (4%)

Query: 62  MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
           +FDEM Q          I+P    +C VI    R++ ++ A ++FD+M    V       
Sbjct: 218 LFDEMTQ--------RGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTC 269

Query: 122 NTLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           N LLN      ++D    L ++ EK  YV  D   Y+ LI G   ++R ED   ++ +M+
Sbjct: 270 NALLNGFCMLDRVDEAFSLLRLFEKDGYVL-DVRGYSCLIRGLFRAKRYEDVQLLYRKMI 328

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           +  ++P +  +  ++ GL    +V +AL+L  + M    V PD   +  LIKG C +G L
Sbjct: 329 EDNVKPDVYLYTIMMKGLAEAGKVRDALELLNE-MTESGVVPDTVCYNVLIKGFCDMGLL 387

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
           S A  ++ E+ R     +   YS LIS + + G   +   I  EM++ GC P++VT+N+L
Sbjct: 388 SEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSL 447

Query: 300 ISGFCKEEDFEAAFTILDEM 319
           I G CK    E A  +  +M
Sbjct: 448 IDGLCKTGQLEKAHLLFYKM 467



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 141/304 (46%), Gaps = 14/304 (4%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y  +I  L RAK ++++Q +  ++  D  + P   ++  ++     A  +  AL++ +EM
Sbjct: 304 YSCLIRGLFRAKRYEDVQLLYRKMIEDN-VKPDVYLYTIMMKGLAEAGKVRDALELLNEM 362

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIHGCVVSRRL 168
           +   V      +N L+      G L   + L  +I      P+  +Y+ILI G   +   
Sbjct: 363 TESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLT 422

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA--LKLKEDIMRVYNV------K 220
            DA ++F+EM K    P+ VTF +LI GLC   ++++A  L  K +I R  ++       
Sbjct: 423 RDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQG 482

Query: 221 P----DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           P    D      +++ LC  G +  A  +  ++           Y+ L++   K G  N 
Sbjct: 483 PSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNG 542

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              + +EM+ +G  P++VTY  LI+G  + +  E A+ + D+M   GC  +   Y  ++ 
Sbjct: 543 AYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMT 602

Query: 337 GLCK 340
            +C+
Sbjct: 603 WMCR 606



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 16/291 (5%)

Query: 64  DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT 123
           DE   +L   + D  ++      C + G + RA+  E    ++ +M   NV+  V  +  
Sbjct: 283 DEAFSLLRLFEKDGYVLDVRGYSCLIRGLF-RAKRYEDVQLLYRKMIEDNVKPDVYLYTI 341

Query: 124 LLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR 182
           ++      GK+ D ++ L ++ E  V PD   YN+LI G      L +A  +  E+ +  
Sbjct: 342 MMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHD 401

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
             P + T+  LI G+C      +A ++  ++ ++    P    F SLI GLC  G+L  A
Sbjct: 402 CFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKL-GCYPSAVTFNSLIDGLCKTGQLEKA 460

Query: 243 --LGVKEEMVRD-----------KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
             L  K E+ R+              +D+     ++  L  +G  ++   IL ++ + G 
Sbjct: 461 HLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGD 520

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            P   TYN L++GFCK  +F  A+ +  EM  KG   + ++Y  ++ GL +
Sbjct: 521 APGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLR 571


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 157/311 (50%), Gaps = 6/311 (1%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           N   ++ LKP   N++ Y+ ++  L  A+ ++E +++L ++  D      ++ F  ++ F
Sbjct: 321 NRMPSYGLKP---NVVCYNTLLKGLCSAERWEETEELLAEM-FDKDCPLDDVTFNILVDF 376

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPD 151
           + +  L++R +++ ++M        V  + T++N     G +D    L + M      P+
Sbjct: 377 FCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPN 436

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             SY I++ G   + R  DA  +  +M+++      +TF TLI  LC +  V++A++L +
Sbjct: 437 TISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLK 496

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
             M V    PD   ++++I GL   G+   AL +   MV   +  +  IYSS+ SAL + 
Sbjct: 497 Q-MLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSRE 555

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           GR N+   +   +++   + ++V YNA+IS  CK  + E A   L  M   GC  N  +Y
Sbjct: 556 GRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTY 615

Query: 332 NVILGGLCKDG 342
            +++ GL  +G
Sbjct: 616 TILIRGLASEG 626



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 147/310 (47%), Gaps = 12/310 (3%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           A P+ P  Y   ++ ++     R ++ D +  +    +     +P   ++  ++    R 
Sbjct: 115 AVPVPPNAYT--YFPVVRALCARGRIADALAVLDEMPRRGCAPIPP--MYHVILEAACRG 170

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSY 155
                A+++ +++ +    + V   N +LN     G +D+   L + +  +   PD  SY
Sbjct: 171 GGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSY 230

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC---LELRVDEALKLKED 212
           N ++ G  +++R     ++ +EMV+    P +VTF TLI  LC   L  RV E L     
Sbjct: 231 NAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQ--- 287

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M  +   PD +++A++I G+C  G L +A  +   M    ++ +   Y++L+  L  A 
Sbjct: 288 -MAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAE 346

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
           R  E   +L EM ++ C  + VT+N L+  FC+    +    +L++M   GC  + I+Y 
Sbjct: 347 RWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYT 406

Query: 333 VILGGLCKDG 342
            ++ G CK+G
Sbjct: 407 TVINGFCKEG 416



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 142/299 (47%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ ++  L  AK +  +Q+++ ++       P  + F  +I +  R  L ER  ++
Sbjct: 226 DVVSYNAVLKGLCMAKRWGCVQELMEEMVR-MACPPNIVTFNTLISYLCRNGLFERVHEV 284

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
             +M+       ++ + T+++     G L    E+   M  Y + P+   YN L+ G   
Sbjct: 285 LAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCS 344

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + R E+  ++  EM  +      VTF  L+   C    VD  ++L E  M V+   PD  
Sbjct: 345 AERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQ-MLVHGCMPDVI 403

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + ++I G C  G +  A+ + + M     + +   Y+ ++  L  A R  +   ++ +M
Sbjct: 404 TYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQM 463

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            ++GC  N +T+N LI+  CK+   E A  +L +M   GC  + ISY+ ++ GL K GK
Sbjct: 464 IQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 522



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 155/334 (46%), Gaps = 38/334 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ ++ +I+ L R  +F+ + ++L Q+  +    P   ++  +I    +   L+ A ++
Sbjct: 261 NIVTFNTLISYLCRNGLFERVHEVLAQMA-EHGCTPDIRMYATIIDGICKEGHLKVAHEI 319

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            + M S+ ++  V  +NTLL    +  + +  +EL  ++ +K    D  ++NIL+     
Sbjct: 320 LNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQ 379

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  ++   ++ ++M+     P ++T+ T+I G C E  +DEA+ L +  M     KP+  
Sbjct: 380 NGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS-MTACGCKPNTI 438

Query: 225 VFASLIKGLCAV-----------------------------------GELSLALGVKEEM 249
            +  ++KGLC+                                    G +  A+ + ++M
Sbjct: 439 SYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQM 498

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           + +    D   YS++I  L KAG+ +E   +L  M  +G  PN++ Y+++ S   +E   
Sbjct: 499 LVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRI 558

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
                + D + D   +++ + YN ++  LCK G+
Sbjct: 559 NKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGE 592



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 105/255 (41%), Gaps = 38/255 (14%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           +N ++      G+L+  + L   +   V P+A +Y  ++       R+ DA  V DEM +
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVP--VPPNAYTYFPVVRALCARGRIADALAVLDEMPR 150

Query: 181 RRLQPTLVTFGTLIYGLC--------------LELR---------------------VDE 205
           R   P    +  ++   C              L  R                     VD+
Sbjct: 151 RGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDK 210

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           AL L  D+   +  +PD   + +++KGLC          + EEMVR     +   +++LI
Sbjct: 211 ALHLLRDLPS-FGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLI 269

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
           S L + G       +L +M E GC P+   Y  +I G CKE   + A  IL+ M   G K
Sbjct: 270 SYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLK 329

Query: 326 ANPISYNVILGGLCK 340
            N + YN +L GLC 
Sbjct: 330 PNVVCYNTLLKGLCS 344



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YN ++ G   + +LE A ++   +    + P   T+  ++  LC   R+ +AL + +++ 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAV---PVPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           R     P   ++  +++  C  G    A+ V E++      +D G  + +++A+   G  
Sbjct: 150 R-RGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSV 208

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           ++   +L+++   GC+P+ V+YNA++ G C  + +     +++EM    C  N +++N +
Sbjct: 209 DKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTL 268

Query: 335 LGGLCKDG 342
           +  LC++G
Sbjct: 269 ISYLCRNG 276


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 142/270 (52%), Gaps = 6/270 (2%)

Query: 78  RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137
           +I P    F  VI    +   + +A  + ++M  +     V  +NTL++     G   +M
Sbjct: 218 KIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKM 277

Query: 138 KE----LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
            +    L +++E  VSP+  ++NILI G      L  + KVF EM+ + + P ++T+ +L
Sbjct: 278 YKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSL 337

Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
           I GLC   +++EA+ ++ D M    V+P+   + SLI G C  G +  AL + + +    
Sbjct: 338 INGLCNGGKINEAIGMR-DKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQG 396

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
                 +Y+ LI A  K G+ ++  A+ +EM+  G  P+  TYN LI+G C+  + EAA 
Sbjct: 397 TRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAK 456

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + D++ +KG   + +++++++ G C  G+
Sbjct: 457 KLFDQLTNKGL-PDLVTFHILMEGYCSRGE 485



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 132/242 (54%), Gaps = 5/242 (2%)

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG-C 162
           ++ EM    +Q  V  FN ++N     GK+++ +++ + M+ Y  SP+  SYN LI G C
Sbjct: 210 LYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYC 269

Query: 163 VV--SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
            +  + ++  A  V  EMV+  + P L TF  LI G   +  +  +LK+ ++++   +V 
Sbjct: 270 KLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLD-QDVI 328

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   + SLI GLC  G+++ A+G++++MV   ++ +   Y SLI+   K G   E   +
Sbjct: 329 PNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDM 388

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
              +K +G +P +  YN LI  +CK    +  F + +EM  +G   +  +YN ++ GLC+
Sbjct: 389 FDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCR 448

Query: 341 DG 342
           +G
Sbjct: 449 NG 450



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 149/301 (49%), Gaps = 7/301 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLK---HDTRIVPKEIIFCNVIGFYGRARLLERA 102
           N+  ++++I  L +    ++ + ++  +K   +   +V    +        G  ++  +A
Sbjct: 222 NVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMY-KA 280

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
             +  EM    V   +  FN L++       L    ++F +++++ V P+  +YN LI+G
Sbjct: 281 DAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLING 340

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                ++ +A  + D+MV   +QP L+T+ +LI G C    + EAL +  D ++    +P
Sbjct: 341 LCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDM-FDSVKGQGTRP 399

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
             +++  LI   C +G++     +KEEM R+ I  D G Y+ LI+ L + G       + 
Sbjct: 400 TTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLF 459

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            ++  +G  P+ VT++ L+ G+C   +   A  +L EM   G K   ++YN+++ G CK+
Sbjct: 460 DQLTNKGL-PDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKE 518

Query: 342 G 342
           G
Sbjct: 519 G 519



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 132/290 (45%), Gaps = 38/290 (13%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ +I  L      +E   +  ++     + P  I + ++I  + +  +++ AL M
Sbjct: 330 NVITYNSLINGLCNGGKINEAIGMRDKMV-SAGVQPNLITYHSLINGFCKNGMMKEALDM 388

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           FD +     + T + +N L++     GK+D    L + ME+  + PD  +YN LI G   
Sbjct: 389 FDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCR 448

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  +E A K+FD++  + L P LVTF  L+ G C      +A  L +++ ++  +KP   
Sbjct: 449 NGNIEAAKKLFDQLTNKGL-PDLVTFHILMEGYCSRGESRKAAMLLKEMSKM-GLKPRHL 506

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  ++KG C  G L  A  ++ +M                                   
Sbjct: 507 TYNIMMKGYCKEGNLKAATNMRTQM----------------------------------E 532

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           KER  + N  +YN L+ G+ ++   E A  +L+EM +KG   N I+Y ++
Sbjct: 533 KERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIV 582



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 103/215 (47%), Gaps = 39/215 (18%)

Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
           R  D   ++ EM++R++QP + TF  +I  LC   ++++A  + ED M+VY   P+   +
Sbjct: 203 RSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMED-MKVYGYSPNVVSY 261

Query: 227 ASLIKGLCAVG---ELSLALGVKEEMVRDKIE---------------------------- 255
            +LI G C +G   ++  A  V +EMV +++                             
Sbjct: 262 NTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKE 321

Query: 256 -MDAGI------YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
            +D  +      Y+SLI+ L   G+ NE   +  +M   G +PN +TY++LI+GFCK   
Sbjct: 322 MLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGM 381

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + A  + D +  +G +     YN+++   CK GK
Sbjct: 382 MKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGK 416


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 152/307 (49%), Gaps = 13/307 (4%)

Query: 40  LKPFRYNLLHYDLIITKLGRAK----MFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYG 94
           LK   +NL    ++I    R +     F  M +I+ +L ++    P  + F  +I G   
Sbjct: 100 LKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKII-KLGYE----PDTVTFSTLINGLCL 154

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDAC 153
             R+ E AL++ D M     + T+   N L+N     GK+ D +  + +++E    P+  
Sbjct: 155 EGRVSE-ALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEV 213

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +Y  ++     S +   A ++  +M +R+++   V +  +I GLC +  +D A  L  + 
Sbjct: 214 TYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE- 272

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M +   K D  ++ +LI+G C  G       +  +M++ KI  D   +S+LI    K G+
Sbjct: 273 MEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGK 332

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             E   + KEM +RG  P++VTY +LI GFCKE   + A  +LD M  KGC  N  ++N+
Sbjct: 333 LREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNI 392

Query: 334 ILGGLCK 340
           ++ G CK
Sbjct: 393 LINGYCK 399



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 134/243 (55%), Gaps = 2/243 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIH 160
           A+ +F EM+    +  +  F+ L +      + D + +L + ME K ++ +  + +I+I+
Sbjct: 56  AVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMIN 115

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
            C   R+L  A+    +++K   +P  VTF TLI GLCLE RV EAL+L + ++ + + K
Sbjct: 116 CCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH-K 174

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P      +L+ GLC  G++S A+ + + MV    + +   Y  ++  + K+G+      +
Sbjct: 175 PTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMEL 234

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L++M+ER  K ++V Y+ +I G CK+   + AF + +EM  KG KA+ I Y  ++ G C 
Sbjct: 235 LRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCY 294

Query: 341 DGK 343
            G+
Sbjct: 295 AGR 297



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 149/297 (50%), Gaps = 3/297 (1%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           +K F+ +++ Y  +I     A  +D+  ++L  +    +I P  + F  +I  + +   L
Sbjct: 275 IKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK-RKITPDVVAFSALIDCFVKEGKL 333

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
             A ++  EM    +      + +L++      +LD+   +  +M  K   P+  ++NIL
Sbjct: 334 REAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNIL 393

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G   +  ++D  ++F +M  R +    VT+ TLI G C   +++ A +L ++ M    
Sbjct: 394 INGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQE-MVSRR 452

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V+PD   +  L+ GLC  GE   AL + E++ + K+E+D GIY+ +I  +  A + ++  
Sbjct: 453 VRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAW 512

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
            +   +  +G KP+  TYN +I G CK+     A  +  +M + G   N  +YN+++
Sbjct: 513 DLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILI 569



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 2/243 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIH 160
           A+ + D M     Q     +  +L      G+     EL + ME + +  DA  Y+I+I 
Sbjct: 196 AVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIID 255

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G      L++A+ +F+EM  +  +  ++ + TLI G C   R D+  KL  D+++   + 
Sbjct: 256 GLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK-RKIT 314

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   F++LI      G+L  A  + +EM++  I  D   Y+SLI    K  + ++   +
Sbjct: 315 PDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHM 374

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L  M  +GC PN  T+N LI+G+CK    +    +  +M  +G  A+ ++YN ++ G C+
Sbjct: 375 LDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 434

Query: 341 DGK 343
            GK
Sbjct: 435 LGK 437



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 132/269 (49%), Gaps = 2/269 (0%)

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           +T   P E+ +  V+    ++     A+++  +M    +++    ++ +++     G LD
Sbjct: 205 ETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLD 264

Query: 136 RMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
               LF  ME K    D   Y  LI G   + R +D  K+  +M+KR++ P +V F  LI
Sbjct: 265 NAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALI 324

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
                E ++ EA +L +++++   + PD   + SLI G C   +L  A  + + MV    
Sbjct: 325 DCFVKEGKLREAEELHKEMIQ-RGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGC 383

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
             +   ++ LI+   KA   ++   + ++M  RG   ++VTYN LI GFC+    E A  
Sbjct: 384 GPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKE 443

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +  EM  +  + + +SY ++L GLC +G+
Sbjct: 444 LFQEMVSRRVRPDIVSYKILLDGLCDNGE 472



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 141/320 (44%), Gaps = 61/320 (19%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P    F  +I  Y +A L++  L++F +MS   V      +NTL+      GKL+  KEL
Sbjct: 385 PNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKEL 444

Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           FQ M  + V PD  SY IL+ G   +   E A ++F+++ K +++  +  +  +I+G+C 
Sbjct: 445 FQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCN 504

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA----------------- 242
             +VD+A  L    + +  VKPD + +  +I GLC  G LS A                 
Sbjct: 505 ASKVDDAWDLFCS-LPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGC 563

Query: 243 ---------LG---------VKEEMVRDKIEMDAGIYS---SLISALFKAGRKNEF---- 277
                    LG         + EE+ R    +DA       S ++ + KAG + +     
Sbjct: 564 TYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFT 623

Query: 278 -----------------PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
                            P + K MK  G KPN VTYN +I G            +LD+M 
Sbjct: 624 TLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMF 683

Query: 321 DKGCKANPISYNVILGGLCK 340
           ++GC+ N ++ +  + GLCK
Sbjct: 684 ERGCQPNAVTKSTFISGLCK 703



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 148/310 (47%), Gaps = 17/310 (5%)

Query: 41  KPFRYNLLHYDLIITKLGRA-------KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           +  + + + Y +II  L +         +F+EM+  +   K D       II+  +I  +
Sbjct: 241 RKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEME--IKGFKADI------IIYTTLIRGF 292

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDA 152
             A   +   ++  +M    +   V  F+ L++  +  GKL   +EL  +++++ +SPD 
Sbjct: 293 CYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDT 352

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +Y  LI G     +L+ A  + D MV +   P + TF  LI G C    +D+ L+L   
Sbjct: 353 VTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRK 412

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M +  V  D   + +LI+G C +G+L +A  + +EMV  ++  D   Y  L+  L   G
Sbjct: 413 -MSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNG 471

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
              +   I +++++   + +   YN +I G C     + A+ +   +  KG K +  +YN
Sbjct: 472 EPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYN 531

Query: 333 VILGGLCKDG 342
           +++GGLCK G
Sbjct: 532 IMIGGLCKKG 541



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 120/246 (48%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
           L+ A  +F+EM     +  +  + TL+      G+ D   +L + M ++ ++PD  +++ 
Sbjct: 263 LDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSA 322

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI   V   +L +A ++  EM++R + P  VT+ +LI G C E ++D+A  +  D+M   
Sbjct: 323 LIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHML-DLMVSK 381

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
              P+ + F  LI G C    +   L +  +M    +  D   Y++LI    + G+    
Sbjct: 382 GCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVA 441

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + +EM  R  +P+ V+Y  L+ G C   + E A  I +++     + +   YN+I+ G
Sbjct: 442 KELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHG 501

Query: 338 LCKDGK 343
           +C   K
Sbjct: 502 MCNASK 507



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 150/333 (45%), Gaps = 60/333 (18%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  ++++I    +A + D+  ++  ++     +V   + +  +I  +     LE A ++
Sbjct: 386 NIRTFNILINGYCKANLIDDGLELFRKMSLRG-VVADTVTYNTLIQGFCELGKLEVAKEL 444

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           F EM S  V+  +  +  LL+     G+ ++  E+F+ +EK  +  D   YNI+IHG   
Sbjct: 445 FQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCN 504

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA----LKLKED-------- 212
           + +++DAW +F  +  + ++P + T+  +I GLC +  + EA     K++ED        
Sbjct: 505 ASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCT 564

Query: 213 ---IMRVYNVKPDGQVFASLIKGLCAVG------ELSLALGVKEEMVRDK---------- 253
              ++R +  + D    A LI+ +   G       L  AL     M++            
Sbjct: 565 YNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTT 624

Query: 254 ------IEMDAGIY---------------------SSLISALFKAGRKNEFPAILKEMKE 286
                 +E +A +Y                     +++I  L      ++ P +L +M E
Sbjct: 625 LLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFE 684

Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           RGC+PN+VT +  ISG CK++   +A  +L +M
Sbjct: 685 RGCQPNAVTKSTFISGLCKQDLHGSAILLLRKM 717



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 1/190 (0%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           SY   +   +V  + +DA  +F EM + R +P L+ F  L   +    + D  L L +  
Sbjct: 39  SYRERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQ- 97

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           M +  +  +    + +I   C   +LSLA     ++++   E D   +S+LI+ L   GR
Sbjct: 98  MELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGR 157

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +E   ++  M E G KP  +T NAL++G C       A  ++D M + G + N ++Y  
Sbjct: 158 VSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGP 217

Query: 334 ILGGLCKDGK 343
           +L  +CK G+
Sbjct: 218 VLKVMCKSGQ 227


>gi|6721172|gb|AAF26800.1|AC016829_24 hypothetical protein [Arabidopsis thaliana]
          Length = 572

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 161/336 (47%), Gaps = 18/336 (5%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L R + D + AL + K          A   K  +++   YD+ +  LG+AK +D M++ +
Sbjct: 158 LHRFRDDWRSALGILK---------WAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFV 208

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130
            +++ D  +    +    ++  +  A   E A+ +FD +  F ++   +  N LL+    
Sbjct: 209 ERMRGDKLVTLNTV--AKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCK 266

Query: 131 CGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
             ++++ + +   ++ +++P+A ++NI IHG   + R+E+A     EM     +P ++++
Sbjct: 267 EKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISY 326

Query: 191 GTLIYGLCLELRVDEALKLKEDI--MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
            T+I   C +    E +K+ E +  M      P+   + +++  L A  E   AL V   
Sbjct: 327 TTIIRCYCQQF---EFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATR 383

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK-EMKERGCKPNSVTYNALISGFCKEE 307
           M R   + D+  Y+ LI  L +AGR  E   + + EM E G   N+ TYN++I+ +C  +
Sbjct: 384 MKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHD 443

Query: 308 DFEAAFTILDEMGDKG-CKANPISYNVILGGLCKDG 342
           + + A  +L EM     C  +  +Y  +L    K G
Sbjct: 444 EEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRG 479



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 98/217 (45%), Gaps = 14/217 (6%)

Query: 133 KLDRMKELFQIM--EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           K DRMKE  + M  +K V+ +  +   ++     +   E+A  +FD + +  L+    + 
Sbjct: 200 KWDRMKEFVERMRGDKLVTLNTVAK--IMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESM 257

Query: 191 GTLIYGLCLELRVDEA----LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
             L+  LC E RV++A    L+LK  I       P+   F   I G C    +  AL   
Sbjct: 258 NLLLDTLCKEKRVEQARVVLLQLKSHIT------PNAHTFNIFIHGWCKANRVEEALWTI 311

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           +EM           Y+++I    +     +   +L EM+  G  PNS+TY  ++S    +
Sbjct: 312 QEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQ 371

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           ++FE A  +   M   GCK + + YN ++  L + G+
Sbjct: 372 KEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGR 408



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 124/306 (40%), Gaps = 46/306 (15%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS 110
           +L++  L + K  ++ + +L QLK  + I P    F   I  + +A  +E AL    EM 
Sbjct: 258 NLLLDTLCKEKRVEQARVVLLQLK--SHITPNAHTFNIFIHGWCKANRVEEALWTIQEMK 315

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMK--ELFQIMEKYVSP------------------ 150
               +  V  + T++  +  C + + +K  E+   ME   SP                  
Sbjct: 316 GHGFRPCVISYTTII--RCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKE 373

Query: 151 ------------------DACSYNILIHGCVVSRRLEDAWKVFD-EMVKRRLQPTLVTFG 191
                             D+  YN LIH    + RLE+A +VF  EM +  +     T+ 
Sbjct: 374 FEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYN 433

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG--VKEEM 249
           ++I   C     D+A++L +++       PD   +  L++     G++ + +G  +KE +
Sbjct: 434 SMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDV-VEVGKLLKEMV 492

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
            +  + +D   Y+ LI  L +A        + +EM  +   P   T   L+    K+   
Sbjct: 493 TKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHRTCLLLLEEVKKKNMH 552

Query: 310 EAAFTI 315
           E+A  I
Sbjct: 553 ESAERI 558



 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 93/215 (43%), Gaps = 4/215 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           FR  ++ Y  II    +   F ++ ++L +++ +    P  I +  ++      +  E A
Sbjct: 319 FRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGS-PPNSITYTTIMSSLNAQKEFEEA 377

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM--EKYVSPDACSYNILIH 160
           L++   M     +    F+N L++     G+L+  + +F++   E  VS +  +YN +I 
Sbjct: 378 LRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIA 437

Query: 161 GCVVSRRLEDAWKVFDEMVKRRL-QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
                   + A ++  EM    L  P + T+  L+        V E  KL ++++  +++
Sbjct: 438 MYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHL 497

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
             D   +  LI+ LC       A  + EEM+   I
Sbjct: 498 SLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDI 532


>gi|255547888|ref|XP_002515001.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546052|gb|EEF47555.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 466

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 157/334 (47%), Gaps = 14/334 (4%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L R + D K AL +F+          A     ++++   YD ++  +G+ K  D+M+ +L
Sbjct: 58  LFRFKDDWKSALGVFR---------WAESRAGYKHSPEAYDTMVDIMGKMKQMDQMEFLL 108

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130
            +++    +  K +     +  +  AR  E  L++FD++ +F ++   +  N LL+    
Sbjct: 109 EEMEKGQHVTLKTV--GKAMRRFAGARQWENVLRVFDKLGTFGLEKNTESMNLLLDTLCK 166

Query: 131 CGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
             K++  +E+F  ++ ++SP+A ++NI IHG     R+E+A+    EM      P ++++
Sbjct: 167 ERKVELAREIFLDLKSHISPNANTFNIFIHGWCKVNRVEEAYWTIQEMKGHGCTPCVISY 226

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
            T++   C      +  +L  D M    + P+   + S++  L    E   AL + + M 
Sbjct: 227 STIVQFYCHRSNFSKVYELL-DEMEAQGLIPNVVTYTSVMSALAKSEEYEEALQIAQRMK 285

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILK-EMKERGCKPNSVTYNALISGFCKEEDF 309
               + D   Y+SLI  L KAGR  E   + + EM   G  PN+ TYN++I+  C     
Sbjct: 286 SVGCKPDTLFYNSLIHTLGKAGRPEEAIQVFEVEMPNTGVPPNTSTYNSMIAMLCHHSQE 345

Query: 310 EAAFTILDEM-GDKGCKANPISYNVILGGLCKDG 342
             A  +L E+     CK +  +Y  +L    K G
Sbjct: 346 RKALNLLKEIEASIICKPDVQTYYPLLKSCFKAG 379



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 104/223 (46%), Gaps = 2/223 (0%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           ++T+++      ++D+M+ L + MEK       +    +     +R+ E+  +VFD++  
Sbjct: 88  YDTMVDIMGKMKQMDQMEFLLEEMEKGQHVTLKTVGKAMRRFAGARQWENVLRVFDKLGT 147

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
             L+    +   L+  LC E +V+ A ++  D+    ++ P+   F   I G C V  + 
Sbjct: 148 FGLEKNTESMNLLLDTLCKERKVELAREIFLDLKS--HISPNANTFNIFIHGWCKVNRVE 205

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A    +EM           YS+++         ++   +L EM+ +G  PN VTY +++
Sbjct: 206 EAYWTIQEMKGHGCTPCVISYSTIVQFYCHRSNFSKVYELLDEMEAQGLIPNVVTYTSVM 265

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           S   K E++E A  I   M   GCK + + YN ++  L K G+
Sbjct: 266 SALAKSEEYEEALQIAQRMKSVGCKPDTLFYNSLIHTLGKAGR 308



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 109/243 (44%), Gaps = 10/243 (4%)

Query: 80  VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
            P  I +  ++ FY       +  ++ DEM +  +   V  + ++++      K +  +E
Sbjct: 220 TPCVISYSTIVQFYCHRSNFSKVYELLDEMEAQGLIPNVVTYTSVMS---ALAKSEEYEE 276

Query: 140 LFQIMEKYVS----PDACSYNILIHGCVVSRRLEDAWKVFD-EMVKRRLQPTLVTFGTLI 194
             QI ++  S    PD   YN LIH    + R E+A +VF+ EM    + P   T+ ++I
Sbjct: 277 ALQIAQRMKSVGCKPDTLFYNSLIHTLGKAGRPEEAIQVFEVEMPNTGVPPNTSTYNSMI 336

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL-SLALGVKEEMV-RD 252
             LC   +  +AL L ++I      KPD Q +  L+K     G + SL   + ++MV + 
Sbjct: 337 AMLCHHSQERKALNLLKEIEASIICKPDVQTYYPLLKSCFKAGSIDSLLSQLLDDMVKKH 396

Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
            + +D   Y+ L+  L +A +      + +EM  +   P   T   L+     +  ++AA
Sbjct: 397 HLSLDFSAYTLLVHGLCRANKCEWAYCLFEEMIGKDMTPKYQTCRLLLDEVKLKHMYDAA 456

Query: 313 FTI 315
             I
Sbjct: 457 QKI 459



 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 80/169 (47%), Gaps = 4/169 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           + L Y+ +I  LG+A   +E  Q+      +T + P    + ++I          +AL +
Sbjct: 292 DTLFYNSLIHTLGKAGRPEEAIQVFEVEMPNTGVPPNTSTYNSMIAMLCHHSQERKALNL 351

Query: 106 FDEM-SSFNVQMTVKFFNTLLNPKLTCGKLDRM-KELFQIMEK--YVSPDACSYNILIHG 161
             E+ +S   +  V+ +  LL      G +D +  +L   M K  ++S D  +Y +L+HG
Sbjct: 352 LKEIEASIICKPDVQTYYPLLKSCFKAGSIDSLLSQLLDDMVKKHHLSLDFSAYTLLVHG 411

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
              + + E A+ +F+EM+ + + P   T   L+  + L+   D A K++
Sbjct: 412 LCRANKCEWAYCLFEEMIGKDMTPKYQTCRLLLDEVKLKHMYDAAQKIE 460


>gi|255660912|gb|ACU25625.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 481

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 163/321 (50%), Gaps = 15/321 (4%)

Query: 35  TEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVPKEII 85
           T  H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +   E +
Sbjct: 24  TSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDM 82

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIM 144
           +  +I  YG+  +++ ++++FD M    V+ T+K ++ L    L  G+    K  F +++
Sbjct: 83  WVMMIDSYGKQGIVQESVKLFDRMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKML 142

Query: 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
            + + P   ++N+LI G  +S ++E A + F++M  R + P +VT+ T+I G     ++ 
Sbjct: 143 SEGIEPTRHTFNVLIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMX 202

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           EA K   + M+  N++P    + +LIKG  +V ++  AL + EEM    I+ +A  YS+L
Sbjct: 203 EAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTL 261

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
           +  L  A + +E  +ILKEM ++   P  NS+ +  LI+  CK    +AA  +L  M   
Sbjct: 262 LPGLCNAEKMSEARSILKEMMDKYLAPTDNSI-FMRLITSQCKSGHLDAASDVLKAMIRL 320

Query: 323 GCKANPISYNVILGGLCKDGK 343
                   Y V++   CK G+
Sbjct: 321 SVPTEAGHYGVLIENFCKAGQ 341



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 129/263 (49%), Gaps = 11/263 (4%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KY 147
           + GF+   ++ E A + F++M S  +   V  +NT++N      K+   ++ F  M+ + 
Sbjct: 157 IWGFFLSGKV-ETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMXEAEKYFVEMKGRN 215

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           + P   +Y  LI G V   +++DA ++ +EM    ++P  +T+ TL+ GLC   ++ EA 
Sbjct: 216 IEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEAR 275

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            + +++M  Y    D  +F  LI   C  G L  A  V + M+R  +  +AG Y  LI  
Sbjct: 276 SILKEMMDKYLAPTDNSIFMRLITSQCKSGHLDAASDVLKAMIRLSVPTEAGHYGVLIEN 335

Query: 268 LFKAGRKNEFPAILKEMKERGC--KPNSV------TYNALISGFCKEEDFEAAFTILDEM 319
             KAG+ ++   +L ++ E+    +P S        YN +I   C       A T++ ++
Sbjct: 336 FCKAGQYDQAVKLLDKVIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQAAKAETLVRQL 395

Query: 320 GDKGCKANPISYNVILGGLCKDG 342
              G + +P + N ++ G  ++G
Sbjct: 396 LKLGVQ-DPTALNTLIRGHSQEG 417



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 134/300 (44%), Gaps = 24/300 (8%)

Query: 34  DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
           D ++  + P   +++ Y+ +I    R K   E ++   ++K    I P  + +  +I  Y
Sbjct: 175 DMKSREISP---DVVTYNTMINGYYRVKKMXEAEKYFVEMK-GRNIEPTVVTYTTLIKGY 230

Query: 94  GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSP-D 151
                ++ AL++ +EM  F ++     ++TLL       K+   + +  ++M+KY++P D
Sbjct: 231 VSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARSILKEMMDKYLAPTD 290

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL-- 209
              +  LI     S  L+ A  V   M++  +      +G LI   C   + D+A+KL  
Sbjct: 291 NSIFMRLITSQCKSGHLDAASDVLKAMIRLSVPTEAGHYGVLIENFCKAGQYDQAVKLLD 350

Query: 210 ----KEDIMR---VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM---DAG 259
               K+ I+R     +++P    +  +I+ LC  G+ + A    E +VR  +++   D  
Sbjct: 351 KVIEKDIILRPQSTLHLEPSA--YNPMIEYLCNNGQAAKA----ETLVRQLLKLGVQDPT 404

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
             ++LI    + G  +    +LK M  R        Y++L+  + K+ +   A   LD M
Sbjct: 405 ALNTLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYDSLVQSYLKKNEPADAKAALDSM 464


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 150/301 (49%), Gaps = 7/301 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLER--AL 103
           N++ Y+++++ L RA   DE + ++ ++   + + P    +   I F G  R  E    L
Sbjct: 263 NIVTYNVLLSGLCRAGRMDETRVLMDEMASHS-MFPDGFTYS--ILFDGLTRTGESRTML 319

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGC 162
            +F E     V +     + LLN     GK+ + +++ +++    + P    YN LI+G 
Sbjct: 320 SLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGY 379

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
              R L  A+ +F++M  R ++P  +T+  LI GLC    V +A  L  + M    V P 
Sbjct: 380 CQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVME-MEKSGVDPS 438

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
            + F +LI      G+L     V  +M +  I+ D   + S++ A  K G+  E  AIL 
Sbjct: 439 VETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILD 498

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +M  +   PN+  YN++I  + +  D E AF ++++M + G  A+ ++YN++L GLC+  
Sbjct: 499 DMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSS 558

Query: 343 K 343
           +
Sbjct: 559 Q 559



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 142/278 (51%), Gaps = 3/278 (1%)

Query: 67  QQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126
           +Q+L  L H T +VP  +I+  +I  Y + R L  A  +F++M S +++     +N L+N
Sbjct: 354 EQVLEMLVH-TGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALIN 412

Query: 127 PKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
                  + + ++L   MEK  V P   ++N LI     + +LE  + V  +M ++ ++ 
Sbjct: 413 GLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKS 472

Query: 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
            +++FG+++   C   ++ EA+ + +D M   +V P+ QV+ S+I      G+   A  +
Sbjct: 473 DVISFGSVVKAFCKNGKIPEAVAILDD-MIYKDVAPNAQVYNSIIDAYIESGDTEQAFLL 531

Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
            E+M    +      Y+ L+  L ++ + +E   ++  ++ +G +P+ V+YN +IS  C 
Sbjct: 532 VEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCN 591

Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + D + A  +L EM   G +    +Y+ ++  L   G+
Sbjct: 592 KGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGR 629



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 118/221 (53%), Gaps = 2/221 (0%)

Query: 121 FNTLLNPKLTCGK-LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +N ++      GK  D +K   ++++  V P+  +YN +I G V    LE  +++ D+M+
Sbjct: 197 YNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQML 256

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
               +P +VT+  L+ GLC   R+DE  ++  D M  +++ PDG  ++ L  GL   GE 
Sbjct: 257 HDGPKPNIVTYNVLLSGLCRAGRMDET-RVLMDEMASHSMFPDGFTYSILFDGLTRTGES 315

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
              L +  E ++  + + A   S L++ L K G+  +   +L+ +   G  P +V YN L
Sbjct: 316 RTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTL 375

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           I+G+C+  D   AF I ++M  +  + + I+YN ++ GLCK
Sbjct: 376 INGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCK 416



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 146/310 (47%), Gaps = 12/310 (3%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRA--KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYG 94
           A P   F YN++   L  +  G    K+FDEM         D  +VP  I +  +I  + 
Sbjct: 189 APPPDAFSYNVVIAGLWRSGKGSDALKVFDEMV--------DMGVVPNWITYNTMIDGHV 240

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDAC 153
           +   LE   ++ D+M     +  +  +N LL+     G++D  + L   M  + + PD  
Sbjct: 241 KGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGF 300

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
           +Y+IL  G   +        +F E +K+ +     T   L+ GLC + +V +A ++ E +
Sbjct: 301 TYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEML 360

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           +    + P   ++ +LI G C V +L  A  + E+M    I  D   Y++LI+ L K   
Sbjct: 361 VHT-GLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEM 419

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
             +   ++ EM++ G  P+  T+N LI  +      E  FT+L +M  KG K++ IS+  
Sbjct: 420 VTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGS 479

Query: 334 ILGGLCKDGK 343
           ++   CK+GK
Sbjct: 480 VVKAFCKNGK 489



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 142/284 (50%), Gaps = 3/284 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +  R + + Y+ +I  L + +M  + + ++ +++  + + P    F  +I  YG A  LE
Sbjct: 398 RHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEK-SGVDPSVETFNTLIDAYGTAGQLE 456

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILI 159
           +   +  +M    ++  V  F +++      GK+ + +  L  ++ K V+P+A  YN +I
Sbjct: 457 KCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSII 516

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
              + S   E A+ + ++M    +  ++VT+  L+ GLC   ++DEA +L    +R   +
Sbjct: 517 DAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIY-TLRNQGL 575

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +PD   + ++I   C  G+   AL + +EM +  I      Y +L+SAL  AGR ++   
Sbjct: 576 RPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMEC 635

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
           + ++M  +  +P+S  Y  ++  + + E+     ++  EM +KG
Sbjct: 636 LYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKG 679



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 39/226 (17%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIM---EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           +N ++   +  G LD    + + M   E    PDA SYN++I G   S +  DA KVFDE
Sbjct: 160 WNKVVQACVAAGDLDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDE 219

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           MV   + P  +T+ T+I                           DG V     KG    G
Sbjct: 220 MVDMGVVPNWITYNTMI---------------------------DGHV-----KG----G 243

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           +L     ++++M+ D  + +   Y+ L+S L +AGR +E   ++ EM      P+  TY+
Sbjct: 244 DLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYS 303

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            L  G  +  +     ++  E   KG      + +++L GLCKDGK
Sbjct: 304 ILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGK 349



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 72/128 (56%), Gaps = 2/128 (1%)

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM--DAGIYSSLISALFKAGRKN 275
             +PD   +  +++   A G+L +AL +   M R +     DA  Y+ +I+ L+++G+ +
Sbjct: 152 GARPDTFAWNKVVQACVAAGDLDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGS 211

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +   +  EM + G  PN +TYN +I G  K  D EA F + D+M   G K N ++YNV+L
Sbjct: 212 DALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLL 271

Query: 336 GGLCKDGK 343
            GLC+ G+
Sbjct: 272 SGLCRAGR 279


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 134/264 (50%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  V+    ++     A+++  +M   N+++    ++ +++     G LD    L
Sbjct: 324 PNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNL 383

Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F  ME K ++ +  +YNILI G   + R +D  K+  +M+KR++ P +VTF  LI     
Sbjct: 384 FNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK 443

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E ++ EA +L ++++    + PD   + SLI G C    L  A  + + MV    + +  
Sbjct: 444 EGKLREAEELHKEMIH-RGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIR 502

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            ++ LI+   KA R ++   + ++M  RG   ++VTYN LI GFC+      A  +  EM
Sbjct: 503 TFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEM 562

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             +    N ++Y ++L GLC +G+
Sbjct: 563 VSRKVPPNIVTYKILLDGLCDNGE 586



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 136/245 (55%), Gaps = 2/245 (0%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNIL 158
           + A+ +F +M       TV  F+ L +      + D +  L + ME K ++ +  + +I+
Sbjct: 168 DDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIM 227

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+     R+L  A+    +++K   +P  +TF TLI GLCLE RV EAL+L + ++ + +
Sbjct: 228 INCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGH 287

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
            KPD     +L+ GLC  G+ + A+ + ++MV    + +A  Y  +++ + K+G+     
Sbjct: 288 -KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAM 346

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +L++M+ER  K ++V Y+ +I G CK    + AF + +EM  KG   N I+YN+++GG 
Sbjct: 347 ELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGF 406

Query: 339 CKDGK 343
           C  G+
Sbjct: 407 CNAGR 411



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 2/243 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIH 160
           A+ + D+M  +  Q     +  +LN     G+     EL + ME + +  DA  Y+I+I 
Sbjct: 310 AMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIID 369

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G      L++A+ +F+EM  + +   ++T+  LI G C   R D+  KL  D+++   + 
Sbjct: 370 GLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIK-RKIN 428

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   F+ LI      G+L  A  + +EM+   I  D   Y+SLI    K    ++   +
Sbjct: 429 PNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQM 488

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +  M  +GC PN  T+N LI+G+CK    +    +  +M  +G  A+ ++YN ++ G C+
Sbjct: 489 VDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 548

Query: 341 DGK 343
            GK
Sbjct: 549 LGK 551



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 150/304 (49%), Gaps = 3/304 (0%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           +K    N++ Y+++I     A  +D+  ++L  +    +I P  + F  +I  + +   L
Sbjct: 389 MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIK-RKINPNVVTFSVLIDSFVKEGKL 447

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
             A ++  EM    +      + +L++       LD+  ++  +M  K   P+  ++NIL
Sbjct: 448 REAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNIL 507

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G   + R++D  ++F +M  R +    VT+ TLI G C   +++ A +L ++ M    
Sbjct: 508 INGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQE-MVSRK 566

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V P+   +  L+ GLC  GE   AL + E++ + K+E+D GIY+ +I  +  A + ++  
Sbjct: 567 VPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAW 626

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +   +  +G KP   TYN +I G CK+     A  +  +M + G   +  +YN+++   
Sbjct: 627 DLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAH 686

Query: 339 CKDG 342
             DG
Sbjct: 687 LGDG 690



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 141/306 (46%), Gaps = 11/306 (3%)

Query: 40  LKPFRYNLLHYDLIITKLGRAK----MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           LK   +NL    ++I    R +     F  M +I+ +L ++    P  I F  +I     
Sbjct: 214 LKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKII-KLGYE----PNTITFSTLINGLCL 268

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACS 154
              +  AL++ D M     +  +   NTL+N     GK      L   M +Y   P+A +
Sbjct: 269 EGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVT 328

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           Y  +++    S +   A ++  +M +R ++   V +  +I GLC    +D A  L  + M
Sbjct: 329 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNE-M 387

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
            +  +  +   +  LI G C  G       +  +M++ KI  +   +S LI +  K G+ 
Sbjct: 388 EMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKL 447

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            E   + KEM  RG  P+++TY +LI GFCKE   + A  ++D M  KGC  N  ++N++
Sbjct: 448 REAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNIL 507

Query: 335 LGGLCK 340
           + G CK
Sbjct: 508 INGYCK 513



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 138/281 (49%), Gaps = 3/281 (1%)

Query: 64  DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT 123
           D+   +   + H +R +P  I F  +     + +  +  L +  +M    +   +   + 
Sbjct: 168 DDAIDLFRDMIH-SRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSI 226

Query: 124 LLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR 182
           ++N    C KL      + +I++    P+  +++ LI+G  +  R+ +A ++ D MV+  
Sbjct: 227 MINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMG 286

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
            +P L+T  TL+ GLCL  +  EA+ L  D M  Y  +P+   +  ++  +C  G+ +LA
Sbjct: 287 HKPDLITINTLVNGLCLSGKEAEAMLLI-DKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 345

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
           + +  +M    I++DA  YS +I  L K G  +    +  EM+ +G   N +TYN LI G
Sbjct: 346 MELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 405

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           FC    ++    +L +M  +    N ++++V++    K+GK
Sbjct: 406 FCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGK 446



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 120/246 (48%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
           L+ A  +F+EM    +   +  +N L+      G+ D   +L + M ++ ++P+  ++++
Sbjct: 377 LDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSV 436

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI   V   +L +A ++  EM+ R + P  +T+ +LI G C E  +D+A ++  D+M   
Sbjct: 437 LIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMV-DLMVSK 495

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
              P+ + F  LI G C    +   L +  +M    +  D   Y++LI    + G+ N  
Sbjct: 496 GCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVA 555

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + +EM  R   PN VTY  L+ G C   + E A  I +++     + +   YN+I+ G
Sbjct: 556 KELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHG 615

Query: 338 LCKDGK 343
           +C   K
Sbjct: 616 MCNASK 621



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 144/297 (48%), Gaps = 3/297 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ + ++I    +     E +++  ++ H   I P  I + ++I  + +   L++A QM
Sbjct: 430 NVVTFSVLIDSFVKEGKLREAEELHKEMIH-RGIAPDTITYTSLIDGFCKENHLDKANQM 488

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            D M S      ++ FN L+N      ++D   ELF+ M  + V  D  +YN LI G   
Sbjct: 489 VDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 548

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L  A ++F EMV R++ P +VT+  L+ GLC     ++AL++ E I +   ++ D  
Sbjct: 549 LGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEK-SKMELDIG 607

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++  +I G+C   ++  A  +   +    ++     Y+ +I  L K G  +E   + ++M
Sbjct: 608 IYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKM 667

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           +E G  P+  TYN LI     + D   +  +++E+   G   +  +  +++  L  D
Sbjct: 668 EEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDD 724



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 122/254 (48%), Gaps = 2/254 (0%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKY 147
           +I  + R R L  A     ++     +     F+TL+N     G++    EL  +++E  
Sbjct: 227 MINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMG 286

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
             PD  + N L++G  +S +  +A  + D+MV+   QP  VT+G ++  +C   +   A+
Sbjct: 287 HKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAM 346

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           +L    M   N+K D   ++ +I GLC  G L  A  +  EM    I  +   Y+ LI  
Sbjct: 347 ELLRK-MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 405

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
              AGR ++   +L++M +R   PN VT++ LI  F KE     A  +  EM  +G   +
Sbjct: 406 FCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPD 465

Query: 328 PISYNVILGGLCKD 341
            I+Y  ++ G CK+
Sbjct: 466 TITYTSLIDGFCKE 479



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 105/223 (47%), Gaps = 34/223 (15%)

Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC------LELRVDEAL 207
           SY   +   +V  + +DA  +F +M+  R  PT++ F  L   +       L L + + +
Sbjct: 153 SYRERLRSGLVDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQM 212

Query: 208 KLKEDIMRVYNV----------------------------KPDGQVFASLIKGLCAVGEL 239
           +LK     +Y +                            +P+   F++LI GLC  G +
Sbjct: 213 ELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRV 272

Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
           S AL + + MV    + D    ++L++ L  +G++ E   ++ +M E GC+PN+VTY  +
Sbjct: 273 SEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPV 332

Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++  CK      A  +L +M ++  K + + Y++I+ GLCK G
Sbjct: 333 LNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHG 375


>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
          Length = 1024

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 167/336 (49%), Gaps = 25/336 (7%)

Query: 12  PRLQKDPKL-ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           P L K   L  LQL + P    +       K F +N   Y L+I  LGR++  +  +  +
Sbjct: 184 PSLSKTTVLQTLQLIRTPAKALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNAARNFV 243

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130
             ++  +                G A     ++++F  M    V  +V  FN+LL+  L 
Sbjct: 244 FSIEKKS----------------GGAE----SIKVFKTMKEIGVSPSVVTFNSLLSIVLK 283

Query: 131 CGKLDRMKELF-QIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
            G+    K+LF ++++ Y V+PD  ++NILI G  ++  +++ +  F EM + +  P +V
Sbjct: 284 RGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVV 343

Query: 189 TFGTLIYGLCLELRVDEALK-LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
           T+ TL+ GLC   +V  A   +K  + +  N+ P+   + +LI+G C   +++ AL +  
Sbjct: 344 TYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLA 403

Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM-KERGCKPNSVTYNALISGFCKE 306
           EMV   ++ +   Y++LI  L +A + ++   IL+ M  + G  P++ T N LI   C  
Sbjct: 404 EMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTM 463

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
              E AF++ ++M +   + +  +Y+V++  LC+ G
Sbjct: 464 GKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRG 499



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 142/300 (47%), Gaps = 14/300 (4%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           I+ K GR  M    +Q+  ++     + P    F  +I  +    +++     F EMS F
Sbjct: 280 IVLKRGRTSM---AKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRF 336

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK---YVSPDACSYNILIHGCVVSRRLE 169
                V  +NTL++     GK+     + + M K    +SP+  +Y  LI G  + + + 
Sbjct: 337 KCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMA 396

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           +A  +  EMV R L+P  +T+ TLI GLC   ++D+  ++ E ++      PD     +L
Sbjct: 397 EALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTL 456

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG---RKNEFPAILKE--- 283
           IK  C +G+L  A  V E+M   +++ D+  YS L+ +L + G   R  EF   L E   
Sbjct: 457 IKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEI 516

Query: 284 -MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            + + GCKP    YN +    C     + A  +  ++  +G + +P SY  ++ G C++G
Sbjct: 517 LLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQ-DPPSYKTLILGHCREG 575



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 93/176 (52%), Gaps = 2/176 (1%)

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           ++ KVF  M +  + P++VTF +L+  +    R   A +L ++++  Y V PD   F  L
Sbjct: 254 ESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNIL 313

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM--KER 287
           I+G C    +       +EM R K + D   Y++L+  L +AG+      ++K M  K  
Sbjct: 314 IRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSP 373

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
              PN VTY  LI G+C ++D   A ++L EM  +G K N I+YN ++ GLC+  K
Sbjct: 374 NLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQK 429



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 111/243 (45%), Gaps = 13/243 (5%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           LKP   N + Y+ +I  L  A+  D++++IL  +  D   +P       +I  +     L
Sbjct: 410 LKP---NKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKL 466

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYV-------SPD 151
           E A  +F++MS   VQ     ++ L+      G   R +E F ++ EK +        P 
Sbjct: 467 EEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPL 526

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             +YN +      + + + A +VF +++KR  Q    ++ TLI G C E   +    L  
Sbjct: 527 VAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDP-PSYKTLILGHCREGTPEAGFDLLV 585

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            ++R  +  PD + +  +I GL   G+  LA    E+M++        I+ S+++AL + 
Sbjct: 586 LMLR-RDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEK 644

Query: 272 GRK 274
            R+
Sbjct: 645 ERR 647


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 140/269 (52%), Gaps = 12/269 (4%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P    F  +I  Y    +L++A+ +F+EM    V+  V  + T++      GK+D   
Sbjct: 392 IAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAM 451

Query: 139 ELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
           E F Q++++ V PD  +Y+ LI G      L  A ++  E++   ++  +V FG++I  L
Sbjct: 452 EKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNL 511

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C   RV +A  + +  + V  + PD  V+  L+ G C VG++  AL V + MV   IE +
Sbjct: 512 CKLGRVMDAQNIFDLTVNV-GLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 570

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI-- 315
              Y +L++   K GR +E  ++ +EM ++G KP+++ YN +I G      FEA  T+  
Sbjct: 571 VVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL-----FEAGRTVPA 625

Query: 316 ---LDEMGDKGCKANPISYNVILGGLCKD 341
                EM + G   N  +Y+++L GL K+
Sbjct: 626 KVKFHEMTESGIAMNKCTYSIVLRGLFKN 654



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 155/312 (49%), Gaps = 8/312 (2%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF-CNVIG 91
           N+   H +KP   +++ Y  +I  L R    D+  +  +Q+  D  +VP +  + C + G
Sbjct: 420 NEMRDHGVKP---HVVTYMTVIAALCRIGKMDDAMEKFNQMI-DQGVVPDKYAYHCLIQG 475

Query: 92  FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSP 150
           F     LL +A ++  E+ +  +++ + FF +++N     G++   + +F +     + P
Sbjct: 476 FCTHGSLL-KAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHP 534

Query: 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
           DA  YN+L+ G  +  ++E A +VFD MV   ++P +V +GTL+ G C   R+DE L L 
Sbjct: 535 DAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLF 594

Query: 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270
            ++++   +KP   ++  +I GL   G    A     EM    I M+   YS ++  LFK
Sbjct: 595 REMLQ-KGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFK 653

Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
               +E   + KE++    K + +T N +I+G  +    E A  +   +   G     ++
Sbjct: 654 NRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVT 713

Query: 331 YNVILGGLCKDG 342
           Y++++  L K+G
Sbjct: 714 YSIMITNLLKEG 725



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 152/334 (45%), Gaps = 38/334 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +L+ Y  ++  L +A+  D+ +  L Q+ +   ++P    + N+I  Y      + A+++
Sbjct: 255 DLVTYSSVVHALCKARAMDKAEAFLRQMVNKG-VLPDNWTYNNLIYGYSSTGQWKEAVRV 313

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHG--- 161
           F EM   ++   V   NTL+      GK+   +++F  M  K  +PD  SY I+++G   
Sbjct: 314 FKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYAT 373

Query: 162 --CVVSRR------------------------------LEDAWKVFDEMVKRRLQPTLVT 189
             C+V                                 L+ A  +F+EM    ++P +VT
Sbjct: 374 KGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVT 433

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           + T+I  LC   ++D+A++ K + M    V PD   +  LI+G C  G L  A  +  E+
Sbjct: 434 YMTVIAALCRIGKMDDAME-KFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEI 492

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           + + + +D   + S+I+ L K GR  +   I       G  P++V YN L+ G+C     
Sbjct: 493 MNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKM 552

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           E A  + D M   G + N + Y  ++ G CK G+
Sbjct: 553 EKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGR 586



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 139/294 (47%), Gaps = 3/294 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  ++++I       M D+   I ++++ D  + P  + +  VI    R   ++ A++ 
Sbjct: 395 DIYTFNVLIKAYANCGMLDKAMIIFNEMR-DHGVKPHVVTYMTVIAALCRIGKMDDAMEK 453

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           F++M    V      ++ L+    T G L + KEL  +IM   +  D   +  +I+    
Sbjct: 454 FNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCK 513

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R+ DA  +FD  V   L P  V +  L+ G CL  ++++AL++  D M    ++P+  
Sbjct: 514 LGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVF-DAMVSAGIEPNVV 572

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +L+ G C +G +   L +  EM++  I+    +Y+ +I  LF+AGR         EM
Sbjct: 573 GYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEM 632

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            E G   N  TY+ ++ G  K   F+ A  +  E+     K + I+ N ++ G+
Sbjct: 633 TESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGM 686



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 113/261 (43%), Gaps = 39/261 (14%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEK---YVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
           +N LL      GK  +  +L ++M +     SPD  +YN +I G      +  A  +F E
Sbjct: 187 YNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKE 246

Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
           MV+R + P LVT+ ++++ LC    +D+A      ++    V PD   + +LI G  + G
Sbjct: 247 MVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVN-KGVLPDNWTYNNLIYGYSSTG 305

Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE-------------------FP 278
           +   A+ V +EM R  I  D    ++L+ +L K G+  E                   + 
Sbjct: 306 QWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYT 365

Query: 279 AILKEMKERGC----------------KPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
            +L     +GC                 P+  T+N LI  +      + A  I +EM D 
Sbjct: 366 IMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDH 425

Query: 323 GCKANPISYNVILGGLCKDGK 343
           G K + ++Y  ++  LC+ GK
Sbjct: 426 GVKPHVVTYMTVIAALCRIGK 446



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 136/302 (45%), Gaps = 3/302 (0%)

Query: 44  RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
           R +++ +  II  L +     + Q I   L  +  + P  +++  ++  Y     +E+AL
Sbjct: 498 RLDIVFFGSIINNLCKLGRVMDAQNIF-DLTVNVGLHPDAVVYNMLMDGYCLVGKMEKAL 556

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGC 162
           ++FD M S  ++  V  + TL+N     G++D    LF ++++K + P    YNI+I G 
Sbjct: 557 RVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 616

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
             + R   A   F EM +  +     T+  ++ GL      DEA+ L ++ +R  NVK D
Sbjct: 617 FEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKE-LRAMNVKID 675

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
                ++I G+     +  A  +   + R  +   A  YS +I+ L K G   E   +  
Sbjct: 676 IITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFS 735

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            M+  GC+P+S   N ++    K+ +   A   L ++ ++      ++  +++      G
Sbjct: 736 SMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKG 795

Query: 343 KC 344
            C
Sbjct: 796 TC 797



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 37/235 (15%)

Query: 146 KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
           + +SP + +Y IL+  C  + R E A   F ++++  L+   +    L+ G C   R DE
Sbjct: 107 RVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDE 166

Query: 206 ALKL--------------------------------KEDIMRVYN-----VKPDGQVFAS 228
           AL +                                 +D++R+         PD   + +
Sbjct: 167 ALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNT 226

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           +I G    G+++ A  + +EMV+  I  D   YSS++ AL KA   ++  A L++M  +G
Sbjct: 227 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKG 286

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             P++ TYN LI G+     ++ A  +  EM  +    + ++ N ++G LCK GK
Sbjct: 287 VLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGK 341



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 105/253 (41%), Gaps = 7/253 (2%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE--LFQIMEKYVSPDA 152
           RA   E AL  F ++    +++     + LL       + D   +  L +  E    PD 
Sbjct: 125 RAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDV 184

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRL--QPTLVTFGTLIYGLCLELRVDEALKL- 209
            SYNIL+       +   A  +   M +      P +V + T+I G   E  V++A  L 
Sbjct: 185 FSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLF 244

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
           KE + R   + PD   ++S++  LC    +  A     +MV   +  D   Y++LI    
Sbjct: 245 KEMVQR--GIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYS 302

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
             G+  E   + KEM+ +   P+ V  N L+   CK    + A  + D M  KG   +  
Sbjct: 303 STGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 362

Query: 330 SYNVILGGLCKDG 342
           SY ++L G    G
Sbjct: 363 SYTIMLNGYATKG 375


>gi|356526063|ref|XP_003531639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 1 [Glycine max]
 gi|356526065|ref|XP_003531640.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 2 [Glycine max]
          Length = 522

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 111/202 (54%), Gaps = 1/202 (0%)

Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           L ++M+  +SP+  S+N LI G         A KV   MV+  +QP +VTF TLI G C 
Sbjct: 248 LEKMMDMGLSPNVVSFNTLISGYCNKGLFGLALKVKSLMVENGVQPNVVTFNTLINGFCK 307

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E ++ EA ++  + M+V NV P    + +L+ G   VG+  + + V EEM+R+ ++ D  
Sbjct: 308 ERKLHEANRVFNE-MKVANVDPSVVTYNTLLNGYGQVGDSEMGVRVYEEMMRNGLKADIL 366

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI  L K G+  +    ++E+ +    PN+ T++ALI+G C   + E AF I   M
Sbjct: 367 TYNALILGLCKDGKTKKAAGFVRELDKENLVPNASTFSALITGQCVRNNSERAFLIYRSM 426

Query: 320 GDKGCKANPISYNVILGGLCKD 341
              GC  N  ++ +++   CK+
Sbjct: 427 VRSGCSPNGQTFQMLISAFCKN 448



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 144/296 (48%), Gaps = 6/296 (2%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS 110
           +  ++ L R +  D       +++  + + P       +I  Y     +++   M ++M 
Sbjct: 193 NAFLSSLLRLRRADIALAFYREIRRRSCVSPNVYTLNMIIRAYCMLGEVQKGFDMLEKMM 252

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLE 169
              +   V  FNTL++     G      ++  +M E  V P+  ++N LI+G    R+L 
Sbjct: 253 DMGLSPNVVSFNTLISGYCNKGLFGLALKVKSLMVENGVQPNVVTFNTLINGFCKERKLH 312

Query: 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229
           +A +VF+EM    + P++VT+ TL+ G       +  +++ E++MR   +K D   + +L
Sbjct: 313 EANRVFNEMKVANVDPSVVTYNTLLNGYGQVGDSEMGVRVYEEMMR-NGLKADILTYNAL 371

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL--KEMKER 287
           I GLC  G+   A G   E+ ++ +  +A  +S+LI+   +  R N   A L  + M   
Sbjct: 372 ILGLCKDGKTKKAAGFVRELDKENLVPNASTFSALITG--QCVRNNSERAFLIYRSMVRS 429

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           GC PN  T+  LIS FCK EDF+ A  +L +M  +    +  + + +  GLC+ GK
Sbjct: 430 GCSPNGQTFQMLISAFCKNEDFDGAVQVLRDMLGRLMSPDLSTMSELCDGLCRCGK 485



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 112/225 (49%), Gaps = 3/225 (1%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           F++L        K      ++ +M+++  SP   S N  +   +  RR + A   + E+ 
Sbjct: 157 FDSLFKTLAHTNKFRHATHIYTLMKEHGFSPTVQSCNAFLSSLLRLRRADIALAFYREIR 216

Query: 180 KRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
           +R  + P + T   +I   C+   V +   + E +M +  + P+   F +LI G C  G 
Sbjct: 217 RRSCVSPNVYTLNMIIRAYCMLGEVQKGFDMLEKMMDM-GLSPNVVSFNTLISGYCNKGL 275

Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
             LAL VK  MV + ++ +   +++LI+   K  + +E   +  EMK     P+ VTYN 
Sbjct: 276 FGLALKVKSLMVENGVQPNVVTFNTLINGFCKERKLHEANRVFNEMKVANVDPSVVTYNT 335

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           L++G+ +  D E    + +EM   G KA+ ++YN ++ GLCKDGK
Sbjct: 336 LLNGYGQVGDSEMGVRVYEEMMRNGLKADILTYNALILGLCKDGK 380



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 2/215 (0%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           + P  + F  +I  + + R L  A ++F+EM   NV  +V  +NTLLN     G  +   
Sbjct: 291 VQPNVVTFNTLINGFCKERKLHEANRVFNEMKVANVDPSVVTYNTLLNGYGQVGDSEMGV 350

Query: 139 ELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
            +++ +M   +  D  +YN LI G     + + A     E+ K  L P   TF  LI G 
Sbjct: 351 RVYEEMMRNGLKADILTYNALILGLCKDGKTKKAAGFVRELDKENLVPNASTFSALITGQ 410

Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
           C+    + A  +   ++R     P+GQ F  LI   C   +   A+ V  +M+   +  D
Sbjct: 411 CVRNNSERAFLIYRSMVRS-GCSPNGQTFQMLISAFCKNEDFDGAVQVLRDMLGRLMSPD 469

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
               S L   L + G+     A+  EM+ R   P+
Sbjct: 470 LSTMSELCDGLCRCGKNQLALALCSEMEVRRLLPD 504


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 160/338 (47%), Gaps = 37/338 (10%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           + F++ L  Y  ++ KLG    F+EM+ +L +++ +      E ++   + FYGR   ++
Sbjct: 113 QGFKHTLFTYKSMLQKLGFHGKFNEMENLLSEMRSNLDNTLLEGVYVEAMRFYGRKGKIQ 172

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            A+  F+ M  FN   +V  +N ++N  +  G  ++  +++  M +K V  D  +Y I I
Sbjct: 173 EAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRI 232

Query: 160 H---------------------GC---------VVSRRLE-----DAWKVFDEMVKRRLQ 184
                                 GC         VV+   E      A ++FDEM++  L 
Sbjct: 233 KSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLC 292

Query: 185 PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
           P + TF  L++ LC +  V E+ +L + +++   V P+   F   I+GLC  G L  A+ 
Sbjct: 293 PDVTTFNKLVHALCKKGFVLESERLFDKVLK-RGVCPNLFTFNIFIQGLCKEGSLDRAVR 351

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
           +   + R+ +  D   Y+++I  L +  R  E    L +M   G +PN  TYN++I G+C
Sbjct: 352 LLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYC 411

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           K+     A  IL +   KG K +  +Y  ++ G C+DG
Sbjct: 412 KKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDG 449



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 3/225 (1%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
           +NTL++      KLD   EL   M  + ++PD  +YN L++G   + + E+  ++F  M 
Sbjct: 543 YNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMT 602

Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
           ++   P ++T+ T+I  LC   +V+EA+ L  + M+   + PD   F +LI G C VG+L
Sbjct: 603 EKGCAPNIITYNTIIESLCNSKKVNEAVDLLGE-MKSKGLTPDVVSFGTLITGFCKVGDL 661

Query: 240 SLALGVKEEMVRD-KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
             A G+   M +   +      Y+ +ISA  +         +  EMK+ GC P++ TY  
Sbjct: 662 DGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRV 721

Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           LI GFCK  +    +  L E  +KG   +  ++  +L  LC + K
Sbjct: 722 LIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHK 766



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 132/251 (52%), Gaps = 12/251 (4%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG--KLDRMKELFQIMEKYVS----PDA 152
           L+RA+++   +S   ++  V  +NT++     CG  +  R+ E  + + K V+    P+ 
Sbjct: 346 LDRAVRLLGCVSREGLRPDVVTYNTVI-----CGLCRKSRVVEAEECLHKMVNGGFEPND 400

Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
            +YN +I G      + DA ++  + V +  +P   T+ +L+ G C +   D+A+ + +D
Sbjct: 401 FTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKD 460

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            +    ++P   V+ +LIKGLC  G +  AL +  EM     + D   Y+ +I+ L K G
Sbjct: 461 GLG-KGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMG 519

Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
             ++   ++ +   +GC P+  TYN L+ G+C++   ++A  +++ M  +G   + I+YN
Sbjct: 520 CLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYN 579

Query: 333 VILGGLCKDGK 343
            +L GLCK  K
Sbjct: 580 TLLNGLCKTAK 590



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 138/301 (45%), Gaps = 3/301 (0%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
            R +++ Y+ +I  L R     E ++ LH++ +     P +  + ++I  Y +  ++  A
Sbjct: 361 LRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGG-FEPNDFTYNSIIDGYCKKGMVVDA 419

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQI-MEKYVSPDACSYNILIHG 161
            ++  +      +     + +L+N     G  D+   +F+  + K + P    YN LI G
Sbjct: 420 NRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKG 479

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 +  A ++ +EM ++  +P + T+  +I GLC    + +A  L  D +      P
Sbjct: 480 LCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAI-TKGCIP 538

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D   + +L+ G C   +L  A+ +   M    +  D   Y++L++ L K  +  E   I 
Sbjct: 539 DIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIF 598

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           K M E+GC PN +TYN +I   C  +    A  +L EM  KG   + +S+  ++ G CK 
Sbjct: 599 KAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKV 658

Query: 342 G 342
           G
Sbjct: 659 G 659



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 142/300 (47%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
           NL  +++ I  L +    D   ++L  +  +  + P  + +  VI G   ++R++E A +
Sbjct: 329 NLFTFNIFIQGLCKEGSLDRAVRLLGCVSREG-LRPDVVTYNTVICGLCRKSRVVE-AEE 386

Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCV 163
              +M +   +     +N++++     G + D  + L   + K   PD  +Y  L++G  
Sbjct: 387 CLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFC 446

Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
                + A  VF + + + L+P+++ + TLI GLC +  +  AL+L  + M     KPD 
Sbjct: 447 QDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNE-MAEKGCKPDI 505

Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
             +  +I GLC +G LS A  +  + +      D   Y++L+    +  + +    ++  
Sbjct: 506 WTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNR 565

Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           M  +G  P+ +TYN L++G CK    E    I   M +KGC  N I+YN I+  LC   K
Sbjct: 566 MWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKK 625



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 126/278 (45%), Gaps = 2/278 (0%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y+LII  L +     +   ++         +P    +  ++  Y R   L+ A+++
Sbjct: 504 DIWTYNLIINGLCKMGCLSDANHLIGD-AITKGCIPDIFTYNTLVDGYCRQLKLDSAIEL 562

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            + M S  +   V  +NTLLN      K + + E+F+ M EK  +P+  +YN +I     
Sbjct: 563 VNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCN 622

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S+++ +A  +  EM  + L P +V+FGTLI G C    +D A  L   + + Y+V     
Sbjct: 623 SKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTA 682

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  +I        + +AL +  EM ++  + D   Y  LI    K G  N+    L E 
Sbjct: 683 TYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLEN 742

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
            E+G  P+  T+  +++  C E   + A  I+  M  K
Sbjct: 743 IEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQK 780


>gi|255660878|gb|ACU25608.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 484

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 164/325 (50%), Gaps = 15/325 (4%)

Query: 31  NPNDTEAHPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRIVP 81
           + + T  H L+ FR+    NL  ++      II  LGRA   +  + IL  +     +  
Sbjct: 20  HSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEW 78

Query: 82  KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141
            E ++  +I  YG+  +++ +++MF +M    V+ T+K +N L    L  G+    K  F
Sbjct: 79  DEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYF 138

Query: 142 -QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
            +++ + + P   ++N++I G  +S ++E A + F++M  R + P +VT+ T+I G    
Sbjct: 139 NKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRV 198

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
            +++EA K   + M+  N++P    + +LIKG  +V ++   L + EEM    I+ +A  
Sbjct: 199 KKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDXLRLVEEMKGFGIKPNAIT 257

Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDE 318
           YS+L+  L  A + +E   ILKEM ++   P  NS+ +  LIS  CK  + +AA  +L  
Sbjct: 258 YSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSI-FMRLISSHCKSGNLDAAADVLKA 316

Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
           M           Y  ++   CK G+
Sbjct: 317 MIRLSVPTEAGHYGXLIENFCKAGQ 341



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 117/303 (38%), Gaps = 78/303 (25%)

Query: 79  IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
           I P  + +  +I  Y R + +E A + F EM   N++ TV  + TL+   ++  ++D   
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDXL 240

Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT-------LVT- 189
            L + M+ + + P+A +Y+ L+ G   + ++ +A  +  EM+ + L PT       L++ 
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300

Query: 190 ----------------------------FGTLIYGLCLELRVDEALKL------KEDIMR 215
                                       +G LI   C   + D+A+KL      K+ I+R
Sbjct: 301 HCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFCKAGQYDKAVKLLDKLIEKDIILR 360

Query: 216 ---VYNVKP--------------------------------DGQVFASLIKGLCAVGELS 240
                +++P                                D     +LI+G    G   
Sbjct: 361 PQSTLHLEPSAYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSPD 420

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            A  + + M+R K++ +   Y SL+ +  K     +  A L  M E    P+S  + +++
Sbjct: 421 SAFELLKIMLRRKVBSEKSAYISLVQSXLKKNEPXDAKAALDSMIENDHLPDSALFRSVM 480

Query: 301 SGF 303
              
Sbjct: 481 ESL 483


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 160/333 (48%), Gaps = 38/333 (11%)

Query: 47  LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMF 106
           ++ Y +II  L + ++ +E   + + ++    I P  + + ++I     +   ++A  +F
Sbjct: 244 VVSYSIIIDSLCKNRLVNEAVDLFYHMR-SIGISPTVVTYNSLIYGMCNSGQWKQASILF 302

Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGK-LDRMKELFQIMEKYVSPDACSYNILIHGC--- 162
            EM  +N++  V  F+ L++     G  L+ +    ++++  + PD  +Y+ LIHG    
Sbjct: 303 KEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKS 362

Query: 163 ------------VVSRRL--------------------EDAWKVFDEMVKRRLQPTLVTF 190
                       ++SR +                     +A  + + M++R L+P +VT+
Sbjct: 363 SLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTY 422

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
            +L+ G CL  ++DEA K+  DIM      PD   +  LIKG C    +  A  + +EM 
Sbjct: 423 NSLMDGYCLHSQMDEARKV-FDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMS 481

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
              +  ++  +++LIS L +AGR      + K+M   GC P+ +TY+ L+SGFCK    +
Sbjct: 482 HKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLD 541

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            A  + + +     K N +   ++LGG+CK GK
Sbjct: 542 EALALFEALKKSQLKPNHVICKILLGGMCKAGK 574



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 137/261 (52%), Gaps = 4/261 (1%)

Query: 81  PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MK 138
           P  I F  +I G     R++E A++  D + S   Q TV     ++N     GK    + 
Sbjct: 172 PSIITFNTLINGLCIEGRIVE-AMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIV 230

Query: 139 ELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
            + +++E    P+  SY+I+I     +R + +A  +F  M    + PT+VT+ +LIYG+C
Sbjct: 231 WMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMC 290

Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
              +  +A  L ++++  +N+KPD   F+ L+  LC  G +  AL V  +M++  +E D 
Sbjct: 291 NSGQWKQASILFKEMLE-WNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDI 349

Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
             YSSLI  + K+    E   +L EM  R  +P+ VT++  +  FCK+     A +I++ 
Sbjct: 350 VTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINL 409

Query: 319 MGDKGCKANPISYNVILGGLC 339
           M ++G + N ++YN ++ G C
Sbjct: 410 MIERGLRPNVVTYNSLMDGYC 430



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 126/247 (51%), Gaps = 6/247 (2%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
            + AL  F++M   N    +  FN LL   +     D +  +++ ME + VS    +  I
Sbjct: 85  FDDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTI 144

Query: 158 LIHGCVVSRRLED-AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM-R 215
           LI+ C+    L    + V  ++ K   +P+++TF TLI GLC+E R+ EA++  + IM R
Sbjct: 145 LIN-CLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSR 203

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
            Y  +P       ++ GLC +G+ S A+   ++MV    E +   YS +I +L K    N
Sbjct: 204 GY--QPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVN 261

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E   +   M+  G  P  VTYN+LI G C    ++ A  +  EM +   K + +++++++
Sbjct: 262 EAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILV 321

Query: 336 GGLCKDG 342
             LCK+G
Sbjct: 322 DALCKEG 328



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 149/315 (47%), Gaps = 16/315 (5%)

Query: 29  NPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN 88
           NP P  T+ + L      + HYD +++   + + F     +     +   I+   +   +
Sbjct: 99  NPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSV-----YTLTILINCLCHLH 153

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKY 147
           ++G             +  ++     + ++  FNTL+N     G++ + M++L  IM + 
Sbjct: 154 LVGL---------GFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRG 204

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
             P   ++ ++++G     +   A     +MV+   +P +V++  +I  LC    V+EA+
Sbjct: 205 YQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAV 264

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            L    MR   + P    + SLI G+C  G+   A  + +EM+   ++ D   +S L+ A
Sbjct: 265 DLFYH-MRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDA 323

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
           L K G   E  ++  +M +   +P+ VTY++LI G CK   ++ + T+L+EM  +  + +
Sbjct: 324 LCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPD 383

Query: 328 PISYNVILGGLCKDG 342
            +++++ +   CK G
Sbjct: 384 VVTFSIWVDVFCKKG 398



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 124/248 (50%), Gaps = 3/248 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  +I  + ++ ++ E   +L+++     I P  + F   +  + +  ++  A  +
Sbjct: 348 DIVTYSSLIHGVCKSSLWKESSTLLNEML-SRNIRPDVVTFSIWVDVFCKKGMVSEAQSI 406

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            + M    ++  V  +N+L++      ++D  +++F IM  K  +PD  SYNILI G   
Sbjct: 407 INLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCK 466

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           S R+++A ++FDEM  + L P  +T  TLI GLC   R   A +L +  M  +   PD  
Sbjct: 467 SERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKK-MGSHGCPPDLI 525

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +++L+ G C  G L  AL + E + + +++ +  I   L+  + KAG+  +   +   +
Sbjct: 526 TYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSL 585

Query: 285 KERGCKPN 292
                +P+
Sbjct: 586 SIEELQPD 593



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 88/183 (48%), Gaps = 3/183 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           +  R N++ Y+ ++         DE +++   +  +    P  + +  +I  Y ++  ++
Sbjct: 413 RGLRPNVVTYNSLMDGYCLHSQMDEARKVF-DIMVNKGCAPDVLSYNILIKGYCKSERID 471

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
            A Q+FDEMS   +        TL++     G+    KELF+ M  +   PD  +Y+ L+
Sbjct: 472 EAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLL 531

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
            G      L++A  +F+ + K +L+P  V    L+ G+C   ++++A +L    + +  +
Sbjct: 532 SGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSS-LSIEEL 590

Query: 220 KPD 222
           +PD
Sbjct: 591 QPD 593


>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 451

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 162/364 (44%), Gaps = 43/364 (11%)

Query: 9   ACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQ 68
           + L RL      ALQ F   + N +    H    F       DL I    R  +   +  
Sbjct: 59  SVLKRLWNHGPKALQFFHFLD-NHHREYVHDASSF-------DLAIDIAARLHIHPTVWS 110

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           ++H+++   RI P    F  V   Y  +   ++A+++F  M        +  FNT+L+  
Sbjct: 111 LIHRMR-SLRIGPSPKTFAIVAERYASSGKPDKAVKLFLNMHEHGCFQDLASFNTILDVL 169

Query: 129 LTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
               ++++  ELF+ +    S D  +YN++++G  + +R   A +V  EMV R + P L 
Sbjct: 170 CKSKRVEKAYELFRALRGRFSADTVTYNVIVNGWCLIKRTPKALEVLKEMVDRGINPNLT 229

Query: 189 TFGTLIYGLCLELRVDEA----LKLKE---------------------DIMRVYNV---- 219
           T+ T++ G     ++ +A    L++K+                     +I R  NV    
Sbjct: 230 TYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKRTRNVFDEM 289

Query: 220 -----KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
                 P    + + I+ LC    +  A+ + EEMVR   E +   Y+ LI  LF AG+ 
Sbjct: 290 IREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKGYEPNVTTYNVLIRGLFHAGKF 349

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +    +++ M+  GC+PN  TYN +I  + +  + E A  + ++MG   C  N  +YN++
Sbjct: 350 SRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGTGDCLPNLDTYNIL 409

Query: 335 LGGL 338
           + G+
Sbjct: 410 ISGM 413



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 126/279 (45%), Gaps = 6/279 (2%)

Query: 68  QILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126
           Q  H L  H    V     F   I    R  +      +   M S  +  + K F  +  
Sbjct: 73  QFFHFLDNHHREYVHDASSFDLAIDIAARLHIHPTVWSLIHRMRSLRIGPSPKTFAIVAE 132

Query: 127 PKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
              + GK D+  +LF  M ++    D  S+N ++     S+R+E A+++F  + + R   
Sbjct: 133 RYASSGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRAL-RGRFSA 191

Query: 186 TLVTFGTLIYGLCLELRVDEALK-LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
             VT+  ++ G CL  R  +AL+ LKE + R   + P+   + ++++G    G++  A  
Sbjct: 192 DTVTYNVIVNGWCLIKRTPKALEVLKEMVDR--GINPNLTTYNTMLQGFFRAGQIRQAWE 249

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
              EM +   E+D   Y++++     AG       +  EM   G  P+  TYNA I   C
Sbjct: 250 FFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKRTRNVFDEMIREGVLPSVATYNAFIQVLC 309

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           K++  E A  + +EM  KG + N  +YNV++ GL   GK
Sbjct: 310 KKDSVENAVVMFEEMVRKGYEPNVTTYNVLIRGLFHAGK 348



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 110/235 (46%), Gaps = 3/235 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  + + Y++I+      K   +  ++L ++  D  I P    +  ++  + RA  + +A
Sbjct: 189 FSADTVTYNVIVNGWCLIKRTPKALEVLKEMV-DRGINPNLTTYNTMLQGFFRAGQIRQA 247

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
            + F EM   N ++ V  + T+++     G++ R + +F +++ + V P   +YN  I  
Sbjct: 248 WEFFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKRTRNVFDEMIREGVLPSVATYNAFIQV 307

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
                 +E+A  +F+EMV++  +P + T+  LI GL    +     +L +  M     +P
Sbjct: 308 LCKKDSVENAVVMFEEMVRKGYEPNVTTYNVLIRGLFHAGKFSRGEELMQR-MENEGCEP 366

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           + Q +  +I+      E+  ALG+ E+M       +   Y+ LIS +F   R  +
Sbjct: 367 NFQTYNMMIRYYSECSEVEKALGLFEKMGTGDCLPNLDTYNILISGMFVRKRSED 421


>gi|224111544|ref|XP_002315895.1| predicted protein [Populus trichocarpa]
 gi|222864935|gb|EEF02066.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 165/343 (48%), Gaps = 15/343 (4%)

Query: 3   TSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKM 62
           + S+    L +L     LAL  F+          A   K F+Y+   Y  +I  LG+ K 
Sbjct: 4   SPSLVFEALKKLSNAGALALSFFR---------WAEKQKGFQYSTESYHALIESLGKIKQ 54

Query: 63  FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
           F+ +  ++  +K    ++ KE  F  +   Y RAR ++ A+  F +M  F +++     N
Sbjct: 55  FNVIWNLVTDMKQKG-LLNKET-FALISRRYARARKVKEAVDAFMKMEKFGLKIESSDVN 112

Query: 123 TLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
            LL+      +++R + +F  M K  +V+ D  SY IL+ G    + L    +V++EM  
Sbjct: 113 RLLDTLCKSRQVERAQLVFDKMNKRGFVA-DIKSYTILLEGWGQEKNLSRLMEVYNEMKD 171

Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
              +P +VT+G LI   C   R D+A++L  + M   N KP   ++ +LI GL A   LS
Sbjct: 172 EGFEPDVVTYGILINAHCKSRRYDDAIELFHE-MEAKNCKPSPHIYCTLINGLGAEKRLS 230

Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
            AL   E         +A  Y++++ A   + R ++    + EM++ G  P++ TY+ ++
Sbjct: 231 EALEFFELSKASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDIIL 290

Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
               +    + A+++  +M  +GC+ +  +Y +I+   C + +
Sbjct: 291 HHLIRAGKTKIAYSVFQKMSCEGCQPSVSTYEIIVRMFCNEDR 333



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 115/234 (49%), Gaps = 3/234 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  +++ Y ++I    +++ +D+  ++ H+++      P   I+C +I   G  + L  A
Sbjct: 174 FEPDVVTYGILINAHCKSRRYDDAIELFHEMEAKN-CKPSPHIYCTLINGLGAEKRLSEA 232

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
           L+ F+   +         +N ++       ++D ++     M K  V P A +Y+I++H 
Sbjct: 233 LEFFELSKASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILHH 292

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
            + + + + A+ VF +M     QP++ T+  ++   C E RVD A+K+  D M+   + P
Sbjct: 293 LIRAGKTKIAYSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRVDMAIKV-WDQMKAKGILP 351

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
              +F++LI  LC   +L  A    +EM+   I   A ++S+L   L   G+K+
Sbjct: 352 VMHMFSTLINSLCHESKLDEACMYFQEMLDVGIRPPAQLFSNLKQNLLDEGKKD 405


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 151/306 (49%), Gaps = 10/306 (3%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  + ++  Y  ++        F +M  + + +K +  I     +F  +I  Y +  +++
Sbjct: 399 KGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNG-IAANCHVFTILIHAYAKRGMVD 457

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILI 159
            A+ +F EM    V   V  ++T+++     G+L D M++  Q++ + + P+   Y+ +I
Sbjct: 458 DAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSII 517

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRL-QPTLVTFGTLIYGLCLELRVDEA---LKLKEDIMR 215
            G  +   L  A ++  EM+ + + +P +V F ++I  LC + RV +A     L  DI  
Sbjct: 518 QGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDI-- 575

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
               +P    F SLI G C VG++  A  + + M    +E D   Y++L+   FK GR N
Sbjct: 576 --GERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRIN 633

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           +   + +EM+ +G KPN+VTY  +++G  +     AA     EM + G       Y +IL
Sbjct: 634 DGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIIL 693

Query: 336 GGLCKD 341
           GGLC++
Sbjct: 694 GGLCRN 699



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 139/300 (46%), Gaps = 5/300 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRIVPKEIIFCNVI-GFYGRARLLERAL 103
           N + Y +++  L    M      +L  + K      P  + +  VI GF+       +A 
Sbjct: 227 NAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGET-GKAC 285

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK-ELFQIMEKYVSPDACSYNILIHGC 162
            +F EM+   V+  V  +N +++       +D+ +  L Q+      PD  +Y+ +IHG 
Sbjct: 286 SLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGY 345

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
               RL++A K+F EM KR L P +VT  + +  LC   R  EA +   D M     KPD
Sbjct: 346 ATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEF-FDSMTAKGHKPD 404

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              + +L+ G  + G  +  +G+   M  + I  +  +++ LI A  K G  ++   I  
Sbjct: 405 IFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFT 464

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           EM+++G  P+ VTY+ +IS F +      A    ++M  +G + N   Y+ I+ G C  G
Sbjct: 465 EMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHG 524



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 156/335 (46%), Gaps = 39/335 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+LII  L +A+  D+ + +L Q+  D    P  + +  +I  Y     L+ A +M
Sbjct: 299 DVVTYNLIIDALCKARAMDKAELVLRQMTTDG-AQPDTVTYSCMIHGYATLGRLKEAAKM 357

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHG--- 161
           F EM    +   +   N+ L      G+     E F  M  K   PD  SY  L+HG   
Sbjct: 358 FREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYAS 417

Query: 162 ----------------------CVV--------SRR--LEDAWKVFDEMVKRRLQPTLVT 189
                                 C V        ++R  ++DA  +F EM ++ + P +VT
Sbjct: 418 EGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVT 477

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           + T+I       R+ +A++ K + M    ++P+  V++S+I+G C  G L  A  +  EM
Sbjct: 478 YSTVISTFSRMGRLTDAME-KFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEM 536

Query: 250 VRDKIEM-DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
           +   I   D   +SS+I++L K GR  +   I     + G +P  +T+N+LI G+C    
Sbjct: 537 INKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGK 596

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            + AF ILD M   G + + ++YN +L G  K+G+
Sbjct: 597 MDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGR 631



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 134/286 (46%), Gaps = 11/286 (3%)

Query: 60  AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK 119
           A+ FD M    H+        P    +C ++  Y         + +F+ M S  +     
Sbjct: 390 AEFFDSMTAKGHK--------PDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCH 441

Query: 120 FFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
            F  L++     G +D    +F  M++  VSPD  +Y+ +I       RL DA + F++M
Sbjct: 442 VFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQM 501

Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
           V R +QP    + ++I G C+   + +A +L  +++     +PD   F+S+I  LC  G 
Sbjct: 502 VARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGR 561

Query: 239 LSLALGVKEEMVRDKIEMDAGI-YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
           +  A  +  ++  D  E    I ++SLI      G+ ++   IL  M+  G +P+ VTYN
Sbjct: 562 VMDAHDI-FDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYN 620

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            L+ G+ K        T+  EM  KG K N ++Y ++L GL + G+
Sbjct: 621 TLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGR 666



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 136/293 (46%), Gaps = 4/293 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           + ++I    +  M D+   I  +++    + P  + +  VI  + R   L  A++ F++M
Sbjct: 443 FTILIHAYAKRGMVDDAMLIFTEMQQQG-VSPDVVTYSTVISTFSRMGRLTDAMEKFNQM 501

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYV-SPDACSYNILIHGCVVSRR 167
            +  +Q     +++++      G L + KEL  +++ K +  PD   ++ +I+      R
Sbjct: 502 VARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGR 561

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           + DA  +FD       +P ++TF +LI G CL  ++D+A K+  D M V  V+PD   + 
Sbjct: 562 VMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKIL-DAMEVVGVEPDIVTYN 620

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
           +L+ G    G ++  L +  EM R  ++ +   Y  +++ LF+AGR         EM E 
Sbjct: 621 TLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIES 680

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           G       Y  ++ G C+    + A  +  ++G    K +    N ++  + K
Sbjct: 681 GTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYK 733



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 114/255 (44%), Gaps = 11/255 (4%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----- 149
           RAR  +  L +F  +    ++M     NTLL  K  C   +R +E   ++   +S     
Sbjct: 169 RARRPDLGLALFGCILRTGLKMDQITANTLL--KCLC-YANRTEEAVNVLLHRMSELGCV 225

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKR--RLQPTLVTFGTLIYGLCLELRVDEAL 207
           P+A SY+I++     +   + A  +   M K+     P +V + T+I+G   E    +A 
Sbjct: 226 PNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKAC 285

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
            L  ++ R   VKPD   +  +I  LC    +  A  V  +M  D  + D   YS +I  
Sbjct: 286 SLFHEMTR-QGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHG 344

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
               GR  E   + +EMK+RG  PN VT N+ ++  CK    + A    D M  KG K +
Sbjct: 345 YATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPD 404

Query: 328 PISYNVILGGLCKDG 342
             SY  +L G   +G
Sbjct: 405 IFSYCTLLHGYASEG 419



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 93/196 (47%), Gaps = 2/196 (1%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           P  C+YNIL+  C  +RR +    +F  +++  L+   +T  TL+  LC   R +EA+ +
Sbjct: 155 PTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNV 214

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD--KIEMDAGIYSSLISA 267
               M      P+   ++ ++K LC       AL + + M +       D   YS++I  
Sbjct: 215 LLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHG 274

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
            F  G   +  ++  EM  +G KP+ VTYN +I   CK    + A  +L +M   G + +
Sbjct: 275 FFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPD 334

Query: 328 PISYNVILGGLCKDGK 343
            ++Y+ ++ G    G+
Sbjct: 335 TVTYSCMIHGYATLGR 350



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 110/244 (45%), Gaps = 2/244 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F +VI    +   +  A  +FD  +    +  V  FN+L++     GK+D+  ++
Sbjct: 544 PDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKI 603

Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
              ME   V PD  +YN L+ G   + R+ D   +F EM ++ ++P  VT+G ++ GL  
Sbjct: 604 LDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFR 663

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
             R   A K   +++          ++  ++ GLC       A+ + +++    ++    
Sbjct: 664 AGRTVAARKKFHEMIE-SGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSIT 722

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
           I +++I+A++K  RK E   +   +   G  PN  TY  +I    K+   E A  +   M
Sbjct: 723 ILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSM 782

Query: 320 GDKG 323
              G
Sbjct: 783 EKSG 786


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 137/293 (46%), Gaps = 3/293 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I          EM   L  L  +  + P   IF      Y +  ++++A+ +F++M
Sbjct: 342 YGILIHGYATKGALSEMHSFL-DLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKM 400

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
               +   V  +  L++     G++D  +  F Q++ + V+P+   +N L++G     + 
Sbjct: 401 RQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKW 460

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           E A ++  EM+ + + P  V F TLI  LC   RV E  +L  D+M    V+PD   +  
Sbjct: 461 ERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLI-DLMEHVGVRPDAFSYTP 519

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           LI G C  G    A  V + MV   +      Y++L+     A R ++   + +EM  +G
Sbjct: 520 LISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKG 579

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
             P  VTYN ++ G  + + F  A  +   M + G K +  +YN+IL GLCK 
Sbjct: 580 VTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKS 632



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 143/302 (47%), Gaps = 9/302 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y ++I         D+   +  ++  D  I P  + +  VI    +A+L +RA  +
Sbjct: 198 NVVSYSIVINGFFTEGQVDKPYNLFLEMI-DRGIPPDVVTYTTVIDGLCKAQLFDRAEGV 256

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----VSPDACSYNILIHG 161
           F +M     +     +N L++  L+ GK    KE+ Q++E+     + PD  +Y  L++ 
Sbjct: 257 FQQMIDNGFKPNNYTYNCLIHGYLSIGK---WKEVVQMLEEMSARGLKPDCYTYGSLLNY 313

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
              + R  +A   FD M+++ ++P + T+G LI+G   +  + E      D+M    + P
Sbjct: 314 LCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFL-DLMVENGLSP 372

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           D  +F          G +  A+ +  +M +  +  +   Y +LI AL K GR ++     
Sbjct: 373 DHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKF 432

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            +M   G  PN V +N+L+ G C  + +E A  ++ EM D+G   N + +N ++  LC  
Sbjct: 433 NQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNV 492

Query: 342 GK 343
           G+
Sbjct: 493 GR 494



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 150/314 (47%), Gaps = 10/314 (3%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           N    H L P   N+++Y  +I  L +    D+ +   +Q+ ++  + P  ++F +++  
Sbjct: 398 NKMRQHGLSP---NVVNYGALIDALCKLGRVDDAEVKFNQMINEG-VTPNIVVFNSLV-- 451

Query: 93  YGRARL--LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VS 149
           YG   +   ERA ++  EM    +     FFNTL+      G++   + L  +ME   V 
Sbjct: 452 YGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVR 511

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PDA SY  LI G  ++ R ++A KVFD MV   L PT VT+ TL++G C   R+D+A  L
Sbjct: 512 PDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCL 571

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
             +++R   V P    + +++ GL      S A  +   M+    + D   Y+ +++ L 
Sbjct: 572 FREMLR-KGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLC 630

Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
           K+   +E   + + +  +G + N +T+  +I    K    E A  +   +   G   N +
Sbjct: 631 KSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVV 690

Query: 330 SYNVILGGLCKDGK 343
           +Y ++   L ++G 
Sbjct: 691 TYRLVAENLIEEGS 704



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 145/295 (49%), Gaps = 3/295 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           +++  +   +  M D+   I ++++    + P  + +  +I    +   ++ A   F++M
Sbjct: 377 FNIFFSAYAKCGMIDKAMDIFNKMRQHG-LSPNVVNYGALIDALCKLGRVDDAEVKFNQM 435

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIHGCVVSRRL 168
            +  V   +  FN+L+    T  K +R +EL ++++++ + P+A  +N LI       R+
Sbjct: 436 INEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRV 495

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            +  ++ D M    ++P   ++  LI G CL  R DEA K+ + ++ +  + P    + +
Sbjct: 496 MEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSI-GLSPTEVTYNT 554

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
           L+ G C+   +  A  +  EM+R  +      Y++++  LF+  R +E   +   M   G
Sbjct: 555 LLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSG 614

Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            K +  TYN +++G CK    + AF +   +  KG + N I++ +++G L K G+
Sbjct: 615 TKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGR 669



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 122/295 (41%), Gaps = 45/295 (15%)

Query: 95  RARLLERALQMFDEMSSFNVQMTVKFFNTLLNP--KLTCGK-----LDRMKELFQIMEKY 147
           R+  L+ AL++FDE+       +V+ FN LL    +  C       +     + +     
Sbjct: 26  RSLGLDDALKLFDELLHHARPASVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSDK 85

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
           V+P+ C+Y+ILI        LE  +  F  ++K   +   +    L+ GLC   RV EA+
Sbjct: 86  VAPNLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAM 145

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLC--------------------------------- 234
            +    M      PD   +  L+KGLC                                 
Sbjct: 146 DVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIV 205

Query: 235 -----AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
                  G++     +  EM+   I  D   Y+++I  L KA   +    + ++M + G 
Sbjct: 206 INGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGF 265

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
           KPN+ TYN LI G+     ++    +L+EM  +G K +  +Y  +L  LCK+G+C
Sbjct: 266 KPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRC 320


>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
 gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 453

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 160/364 (43%), Gaps = 43/364 (11%)

Query: 9   ACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQ 68
           + L RL      ALQ F   + N +    H    F       DL I    R  +   +  
Sbjct: 61  SVLKRLWNHGPKALQFFHFLD-NHHREYVHDASSF-------DLAIDIAARLHLHPTVWS 112

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           ++H+++   RI P    F  V   Y  A   ++A+++F  M        +  FNT+L+  
Sbjct: 113 LIHRMR-SLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVL 171

Query: 129 LTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
               ++++  ELF+ +    S D  +YN++++G  + +R   A +V  EMV+R + P L 
Sbjct: 172 CKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLT 231

Query: 189 TFGTLIYGLC------------LELR-------------VDEALKLKEDIMRVYNV---- 219
           T+ T++ G              LE++             V     +  +I R  NV    
Sbjct: 232 TYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEM 291

Query: 220 -----KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
                 P    + ++I+ LC    +  A+ + EEMVR   E +   Y+ LI  LF AG  
Sbjct: 292 IREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEF 351

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +    +++ M+  GC+PN  TYN +I  + +  + E A  + ++MG   C  N  +YN++
Sbjct: 352 SRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNIL 411

Query: 335 LGGL 338
           + G+
Sbjct: 412 ISGM 415



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 128/279 (45%), Gaps = 6/279 (2%)

Query: 68  QILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126
           Q  H L  H    V     F   I    R  L      +   M S  +  + K F  +  
Sbjct: 75  QFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAE 134

Query: 127 PKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
              + GK D+  +LF  M ++    D  S+N ++     S+R+E A+++F   ++ R   
Sbjct: 135 RYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELF-RALRGRFSV 193

Query: 186 TLVTFGTLIYGLCLELRVDEALK-LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
             VT+  ++ G CL  R  +AL+ LKE + R   + P+   + +++KG    G++  A  
Sbjct: 194 DTVTYNVILNGWCLIKRTPKALEVLKEMVER--GINPNLTTYNTMLKGFFRAGQIRHAWE 251

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
              EM +   E+D   Y++++     AG       +  EM   G  P+  TYNA+I   C
Sbjct: 252 FFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLC 311

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           K+++ E A  + +EM  +G + N  +YNV++ GL   G+
Sbjct: 312 KKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGE 350



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 113/237 (47%), Gaps = 7/237 (2%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  + + Y++I+      K   +  ++L ++  +  I P    +  ++  + RA  +  A
Sbjct: 191 FSVDTVTYNVILNGWCLIKRTPKALEVLKEMV-ERGINPNLTTYNTMLKGFFRAGQIRHA 249

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
            + F EM   + ++ V  + T+++     G++ R + +F +++ + V P   +YN +I  
Sbjct: 250 WEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQV 309

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN--V 219
                 +E+A  +F+EMV+R  +P + T+  LI GL       E  + +E + R+ N   
Sbjct: 310 LCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGL---FHAGEFSRGEELMQRMENEGC 366

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           +P+ Q +  +I+      E+  ALG+ E+M       +   Y+ LIS +F   R  +
Sbjct: 367 EPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSED 423


>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74900, mitochondrial; AltName: Full=Protein
           ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
           Precursor
 gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
 gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 160/364 (43%), Gaps = 43/364 (11%)

Query: 9   ACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQ 68
           + L RL      ALQ F   + N +    H    F       DL I    R  +   +  
Sbjct: 61  SVLKRLWNHGPKALQFFHFLD-NHHREYVHDASSF-------DLAIDIAARLHLHPTVWS 112

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           ++H+++   RI P    F  V   Y  A   ++A+++F  M        +  FNT+L+  
Sbjct: 113 LIHRMR-SLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVL 171

Query: 129 LTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
               ++++  ELF+ +    S D  +YN++++G  + +R   A +V  EMV+R + P L 
Sbjct: 172 CKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLT 231

Query: 189 TFGTLIYGLC------------LELR-------------VDEALKLKEDIMRVYNV---- 219
           T+ T++ G              LE++             V     +  +I R  NV    
Sbjct: 232 TYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEM 291

Query: 220 -----KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
                 P    + ++I+ LC    +  A+ + EEMVR   E +   Y+ LI  LF AG  
Sbjct: 292 IREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEF 351

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +    +++ M+  GC+PN  TYN +I  + +  + E A  + ++MG   C  N  +YN++
Sbjct: 352 SRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNIL 411

Query: 335 LGGL 338
           + G+
Sbjct: 412 ISGM 415



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 128/279 (45%), Gaps = 6/279 (2%)

Query: 68  QILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126
           Q  H L  H    V     F   I    R  L      +   M S  +  + K F  +  
Sbjct: 75  QFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAE 134

Query: 127 PKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
              + GK D+  +LF  M ++    D  S+N ++     S+R+E A+++F  + + R   
Sbjct: 135 RYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRAL-RGRFSV 193

Query: 186 TLVTFGTLIYGLCLELRVDEALK-LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
             VT+  ++ G CL  R  +AL+ LKE + R   + P+   + +++KG    G++  A  
Sbjct: 194 DTVTYNVILNGWCLIKRTPKALEVLKEMVER--GINPNLTTYNTMLKGFFRAGQIRHAWE 251

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
              EM +   E+D   Y++++     AG       +  EM   G  P+  TYNA+I   C
Sbjct: 252 FFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLC 311

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           K+++ E A  + +EM  +G + N  +YNV++ GL   G+
Sbjct: 312 KKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGE 350



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 128/266 (48%), Gaps = 10/266 (3%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  + + Y++I+      K   +  ++L ++  +  I P    +  ++  + RA  +  A
Sbjct: 191 FSVDTVTYNVILNGWCLIKRTPKALEVLKEMV-ERGINPNLTTYNTMLKGFFRAGQIRHA 249

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
            + F EM   + ++ V  + T+++     G++ R + +F +++ + V P   +YN +I  
Sbjct: 250 WEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQV 309

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN--V 219
                 +E+A  +F+EMV+R  +P + T+  LI GL       E  + +E + R+ N   
Sbjct: 310 LCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGL---FHAGEFSRGEELMQRMENEGC 366

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
           +P+ Q +  +I+      E+  ALG+ E+M       +   Y+ LIS +F   R  +   
Sbjct: 367 EPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVV 426

Query: 280 ---ILKEMKERGCKPNSVTYNALISG 302
              +L EM ERG  P   T+N +++G
Sbjct: 427 AGKLLLEMVERGFIPRKFTFNRVLNG 452



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 87/200 (43%), Gaps = 4/200 (2%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y  ++   G A      + +  ++  +  ++P    +  +I    +   +E A+ M
Sbjct: 264 DVVTYTTVVHGFGVAGEIKRARNVFDEMIREG-VLPSVATYNAMIQVLCKKDNVENAVVM 322

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           F+EM     +  V  +N L+      G+  R +EL Q ME +   P+  +YN++I     
Sbjct: 323 FEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSE 382

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY--NVKPD 222
              +E A  +F++M      P L T+  LI G+ +  R ++ +   + ++ +      P 
Sbjct: 383 CSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPR 442

Query: 223 GQVFASLIKGLCAVGELSLA 242
              F  ++ GL   G  + A
Sbjct: 443 KFTFNRVLNGLLLTGNQAFA 462


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 146/301 (48%), Gaps = 4/301 (1%)

Query: 44   RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL 103
            R ++  Y  +I  LG+A   DE      +++ +    P  +   N+I F G+A  L+ A+
Sbjct: 1287 RPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREG-CRPDTVFMNNMINFLGKAGRLDDAM 1345

Query: 104  QMFDEMSSFNVQMTVKFFNTLLNPKLTC-GKLDRMKELFQIM-EKYVSPDACSYNILIHG 161
            ++F EM +     +V  +NT++        +   +   F+ M E  +SP + +Y+ILI G
Sbjct: 1346 KLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDG 1405

Query: 162  CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
               + R+E A  + +EM ++   P    + +LI  L    R D A +L +++        
Sbjct: 1406 FCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSS- 1464

Query: 222  DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
              +V+A +IK L   G L  A+ + +EM +     D   Y++L+S L + G  +E  + +
Sbjct: 1465 SARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTM 1524

Query: 282  KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
            + M+E GC P+  +YN +++G  K      A  +L  M     + + +SYN +LG L   
Sbjct: 1525 RRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHA 1584

Query: 342  G 342
            G
Sbjct: 1585 G 1585



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 137/302 (45%), Gaps = 19/302 (6%)

Query: 43   FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
            F++N  H        G   +F+EM+   HQ        P    +  +I   G+A  ++ A
Sbjct: 1266 FKFNDAH--------GALSLFEEMR---HQY-----CRPDVFTYTELIRGLGKAGRIDEA 1309

Query: 103  LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
               F EM     +    F N ++N     G+LD   +LFQ ME     P   +YN +I  
Sbjct: 1310 YHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKA 1369

Query: 162  CVVSR-RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
               S+ R  +    F+ M +  + P+  T+  LI G C   R+++A+ L E+ M      
Sbjct: 1370 LFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEE-MDEKGFP 1428

Query: 221  PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
            P    + SLI  L       LA  + +E+  +     A +Y+ +I  L KAGR ++   +
Sbjct: 1429 PCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINM 1488

Query: 281  LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
              EM + GC P+   YNAL+SG  +    + A + +  M + GC  +  SYN+IL GL K
Sbjct: 1489 FDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAK 1548

Query: 341  DG 342
             G
Sbjct: 1549 TG 1550



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 130/296 (43%), Gaps = 3/296 (1%)

Query: 50   YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
            Y+ +I  L     ++++ Q+ +++  +    P  + +  +I  + +    + A+Q+ +EM
Sbjct: 1187 YNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEM 1246

Query: 110  SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
                +Q T K +  L+              LF+ M  +Y  PD  +Y  LI G   + R+
Sbjct: 1247 KEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRI 1306

Query: 169  EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
            ++A+  F EM +   +P  V    +I  L    R+D+A+KL ++ M      P    + +
Sbjct: 1307 DEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQE-METLRCIPSVVTYNT 1365

Query: 229  LIKGLC-AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            +IK L  +    S      E M    I   +  YS LI    K  R  +   +L+EM E+
Sbjct: 1366 IIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEK 1425

Query: 288  GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            G  P    Y +LI    K + ++ A  +  E+ +    ++   Y V++  L K G+
Sbjct: 1426 GFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGR 1481



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 124/297 (41%), Gaps = 36/297 (12%)

Query: 43   FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
            + ++   Y  +I  L   + + EM +++ ++  +   V       +V+   G A+++ +A
Sbjct: 1109 YEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQA 1168

Query: 103  LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGC 162
            + +F                                  +QI  +   P A +YN +I   
Sbjct: 1169 ITIF----------------------------------YQIKTRKCQPIAQAYNSMIIML 1194

Query: 163  VVSRRLEDAWKVFDEM-VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
            +   + E   ++++EM  +    P  VT+  LI   C   R D A++L  + M+   ++P
Sbjct: 1195 MHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNE-MKEIGMQP 1253

Query: 222  DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
              +++  LI       +   AL + EEM       D   Y+ LI  L KAGR +E     
Sbjct: 1254 TTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFF 1313

Query: 282  KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
             EM+  GC+P++V  N +I+   K    + A  +  EM    C  + ++YN I+  L
Sbjct: 1314 CEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKAL 1370



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 11/199 (5%)

Query: 151  DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210
            D  +Y  LIH   V  +  + WK+  EMV+    P  V   T +  +   L    A  ++
Sbjct: 1112 DTSTYMALIHCLEVVEQYGEMWKMIQEMVR---NPICVVTPTELSDVVRML--GNAKMVR 1166

Query: 211  EDIMRVYNVK-----PDGQVFASLIKGLCAVGELSLALGVKEEM-VRDKIEMDAGIYSSL 264
            + I   Y +K     P  Q + S+I  L   G+      +  EM        D   YS+L
Sbjct: 1167 QAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSAL 1226

Query: 265  ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
            ISA  K GR++    +L EMKE G +P +  Y  LI+ F K  D   A ++ +EM  + C
Sbjct: 1227 ISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYC 1286

Query: 325  KANPISYNVILGGLCKDGK 343
            + +  +Y  ++ GL K G+
Sbjct: 1287 RPDVFTYTELIRGLGKAGR 1305



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 2/128 (1%)

Query: 218  NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI-EMDAGIYSSLISALFKAGRKNE 276
            N + D   + +LI  L  V +      + +EMVR+ I  +     S ++  L  A    +
Sbjct: 1108 NYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQ 1167

Query: 277  FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG-CKANPISYNVIL 335
               I  ++K R C+P +  YN++I     E  +E    + +EM  +G C  + ++Y+ ++
Sbjct: 1168 AITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALI 1227

Query: 336  GGLCKDGK 343
               CK G+
Sbjct: 1228 SAFCKLGR 1235


>gi|224114285|ref|XP_002316718.1| predicted protein [Populus trichocarpa]
 gi|222859783|gb|EEE97330.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 126/258 (48%), Gaps = 2/258 (0%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145
           FC V+  Y RA  L  A+Q+   M    ++  +   NT ++  +    L++     + M+
Sbjct: 121 FCCVMVSYSRAGKLRNAMQVLTMMQKAGIEPNLLVCNTAIHVLVMANMLEKALRFLERMQ 180

Query: 146 KY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
              + P+  +YN LI G     R+EDA ++  EM  +   P  V++ T++  LC   R+ 
Sbjct: 181 LLGIMPNVVTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIR 240

Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
           E + + E  M    +  D   + +LI  LC       AL    E  +   ++D   YS++
Sbjct: 241 EVMDVIEK-MEDTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAI 299

Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
           + +  K GR ++   I+ EM  RGC P+ VTY A+I+GF +  +   A  +L +M   GC
Sbjct: 300 VDSYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGC 359

Query: 325 KANPISYNVILGGLCKDG 342
           K N +SY   L GLC+ G
Sbjct: 360 KPNTVSYTAFLKGLCQKG 377



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 139/293 (47%), Gaps = 5/293 (1%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           ++    RA       Q+L  ++    I P  ++    I     A +LE+AL+  + M   
Sbjct: 124 VMVSYSRAGKLRNAMQVLTMMQ-KAGIEPNLLVCNTAIHVLVMANMLEKALRFLERMQLL 182

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDA 171
            +   V  +N L+       +++   EL   M  K  SPD  SY  ++     +RR+ + 
Sbjct: 183 GIMPNVVTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREV 242

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDIMRVYNVKPDGQVFASLI 230
             V ++M   +L    VT+ TLI+ LC     DEAL+ L+E   R + V   G  +++++
Sbjct: 243 MDVIEKMEDTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVG--YSAIV 300

Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
              C  G +  A  +  EM       D   Y+++I+   +AG   +   +L++M + GCK
Sbjct: 301 DSYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCK 360

Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           PN+V+Y A + G C++ +   A  ++    ++    N I+Y+V++ G  ++GK
Sbjct: 361 PNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITYSVVMHGFRREGK 413



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 147/306 (48%), Gaps = 3/306 (0%)

Query: 39  PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
           PLK    + + Y  ++  L + +   E+  ++ +++ DT+++  ++ +  +I    + + 
Sbjct: 215 PLKGCSPDKVSYYTVMGFLCKNRRIREVMDVIEKME-DTKLLADQVTYNTLIHMLCKHQH 273

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
            + ALQ   E      Q+    ++ +++     G++D+ KE+  ++  +   PD  +Y  
Sbjct: 274 ADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTA 333

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I+G   +  +  A K+  +M K   +P  V++   + GLC +    EA ++ +     +
Sbjct: 334 IINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQW 393

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
              P+   ++ ++ G    G+LS A  V  EM+           + L+ +L + GR +E 
Sbjct: 394 WT-PNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEA 452

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
              ++E    GC  N+V +  +I  FC+++D EAA ++LD+M       + ++Y  I+  
Sbjct: 453 KKFMEECLNMGCAVNAVNFTTVIHRFCQQDDIEAALSLLDDMYLSNKHPDAVTYTTIIDA 512

Query: 338 LCKDGK 343
           L K G+
Sbjct: 513 LGKKGR 518



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 143/305 (46%), Gaps = 9/305 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-IVPKEIIFCNVIGFYGRARLL 99
           + F+ + + Y  I+    +    D+ ++I++++   TR  +P  + +  +I  + +A  +
Sbjct: 287 RGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMF--TRGCIPDVVTYTAIINGFSQAGEV 344

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNIL 158
            +A +M  +M     +     +   L      G     +E+ +  E ++ +P+A +Y+++
Sbjct: 345 GQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITYSVV 404

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           +HG     +L DA  V  EM+ +   PT V    L+  LC   RVDEA K  E+ + +  
Sbjct: 405 MHGFRREGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEECLNM-G 463

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
              +   F ++I   C   ++  AL + ++M       DA  Y+++I AL K GR  E  
Sbjct: 464 CAVNAVNFTTVIHRFCQQDDIEAALSLLDDMYLSNKHPDAVTYTTIIDALGKKGRIEEAT 523

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM-GDKGCKANPISYNVILGG 337
            +  +M ++G  P  VTY  +I  + +    E    +LD+M   + C+    ++N ++  
Sbjct: 524 ELTLKMLKKGIDPTPVTYRTVIHRYGQIGRVEDLLNLLDKMLTRQECRT---AFNQVIEK 580

Query: 338 LCKDG 342
           LC  G
Sbjct: 581 LCTFG 585



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
           PDA +Y  +I       R+E+A ++  +M+K+ + PT VT+ T+I+      RV++ L L
Sbjct: 501 PDAVTYTTIIDALGKKGRIEEATELTLKMLKKGIDPTPVTYRTVIHRYGQIGRVEDLLNL 560

Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
            + ++     +     F  +I+ LC  G L  A  +  +++R    +DA     L+ +  
Sbjct: 561 LDKMLTRQECRT---AFNQVIEKLCTFGNLEAADKLLGKVLRTASRIDANTCHVLMESYL 617

Query: 270 KAG 272
           + G
Sbjct: 618 RKG 620


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 124/243 (51%), Gaps = 2/243 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIH 160
           AL +FD+      Q  V  + TL+N     G       L + M +K   P+  +YN +I 
Sbjct: 239 ALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIID 298

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
                R++ +A+ +F EM+ + + P + T+ +LI+ LC          L  +++    + 
Sbjct: 299 SLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVN-SKIM 357

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+  VF++++  LC  G +++A  V + M++  +E D   Y++L+         +E   +
Sbjct: 358 PNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKV 417

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
              M  +GC PN  +YN LI+G+C+ +  + A  +L++M  +G  A+ ++YN ++ GLC 
Sbjct: 418 FDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCH 477

Query: 341 DGK 343
            G+
Sbjct: 478 VGR 480



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 144/305 (47%), Gaps = 7/305 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
           K  R N++ Y+ II  L + +   E   +  ++   T+ +  +I   N +  +    L E
Sbjct: 284 KNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMI--TKGISPDIFTYNSL-IHALCNLCE 340

Query: 101 --RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNI 157
                 + +EM +  +   V  F+T+++     G +    ++  +M ++ V PD  +Y  
Sbjct: 341 WKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTA 400

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           L+ G  +   +++A KVFD MV +   P + ++  LI G C   R+D+A+ L E  M + 
Sbjct: 401 LMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQ-MSLQ 459

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
            +  D   + +LI GLC VG L  A+ +  EMV      D   Y  L+  L K     E 
Sbjct: 460 GLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEA 519

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             +LK ++      + + YN  I G C+  + EAA  +   +  KG + +  +YN+++ G
Sbjct: 520 MVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHG 579

Query: 338 LCKDG 342
           LCK G
Sbjct: 580 LCKRG 584



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 122/264 (46%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  I +  +I    + R +  A  +F EM +  +   +  +N+L++      +   +  L
Sbjct: 288 PNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTL 347

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
             +++   + P+   ++ ++        +  A  V D M+KR ++P +VT+  L+ G CL
Sbjct: 348 LNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCL 407

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
              +DEA+K+  D M      P+ + +  LI G C +  +  A+G+ E+M    +  D  
Sbjct: 408 RSEMDEAVKVF-DTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTV 466

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI  L   GR     A+  EM   G  P+ VTY  L+   CK      A  +L  +
Sbjct: 467 TYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAI 526

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
                 A+ + YN+ + G+C+ G+
Sbjct: 527 EGSNLDADILVYNIAIDGMCRAGE 550



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 117/245 (47%), Gaps = 2/245 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNI 157
           ++ A+++FD M        V+ +N L+N      ++D+   L + M  + +  D  +YN 
Sbjct: 411 MDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNT 470

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LIHG     RL+ A  +F EMV     P LVT+  L+  LC    + EA+ L + I    
Sbjct: 471 LIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAI-EGS 529

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           N+  D  V+   I G+C  GEL  A  +   +    ++ D   Y+ +I  L K G  +E 
Sbjct: 530 NLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEA 589

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + ++M E GC  +   YN +I GF +  +   A  +L EM  +G  A+  +  +I+  
Sbjct: 590 NKLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEGFSADVSTTTLIVEM 649

Query: 338 LCKDG 342
           L  DG
Sbjct: 650 LSDDG 654



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 143/299 (47%), Gaps = 3/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           ++  Y+ +I  L     +  +  +L+++  +++I+P  ++F  V+    +  ++  A  +
Sbjct: 324 DIFTYNSLIHALCNLCEWKHVTTLLNEMV-NSKIMPNVVVFSTVVDALCKEGMIAIAHDV 382

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            D M    V+  V  +  L++      ++D   ++F  M  K   P+  SYNILI+G   
Sbjct: 383 VDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQ 442

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            +R++ A  + ++M  + L    VT+ TLI+GLC   R+  A+ L  +++    + PD  
Sbjct: 443 IQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQI-PDLV 501

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            +  L+  LC    L+ A+ + + +    ++ D  +Y+  I  + +AG       +   +
Sbjct: 502 TYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNL 561

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
             +G +P+  TYN +I G CK    + A  +  +M + GC  +   YN I+ G  +  +
Sbjct: 562 SSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFLRSNE 620



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 1/206 (0%)

Query: 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
           D +    +++  +  P    +  L+      +       +  +M    + P + T   LI
Sbjct: 133 DALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILI 192

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
              C   R+  A  +   ++++   +PD   F +LI+GLC  G++  AL + ++ + +  
Sbjct: 193 NSFCHLRRLGYAFSVLAKLLKL-GCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGF 251

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
           + D   Y +L++ L K G  +    +L+ M ++ C+PN + YN +I   CK+     AF 
Sbjct: 252 QPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFN 311

Query: 315 ILDEMGDKGCKANPISYNVILGGLCK 340
           +  EM  KG   +  +YN ++  LC 
Sbjct: 312 LFSEMITKGISPDIFTYNSLIHALCN 337



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 1/174 (0%)

Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
           L+DA   F+ M+     P+ V F  L+  +         L L    M  + + PD     
Sbjct: 131 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQ-MDSFGIPPDVYTLN 189

Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
            LI   C +  L  A  V  ++++   + D   +++LI  L   G+  E   +  +    
Sbjct: 190 ILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGE 249

Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           G +P+ VTY  L++G CK  +  AA  +L  M  K C+ N I+YN I+  LCKD
Sbjct: 250 GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKD 303



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 98/233 (42%), Gaps = 3/233 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y+++I    + +  D+   +L Q+     ++   + +  +I        L+ A+ +
Sbjct: 429 NVRSYNILINGYCQIQRMDKAMGLLEQMSLQG-LIADTVTYNTLIHGLCHVGRLQHAIAL 487

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           F EM +      +  +  LL+       L     L + +E   +  D   YNI I G   
Sbjct: 488 FHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCR 547

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  LE A  +F  +  + LQP + T+  +I+GLC    +DEA KL    M       DG 
Sbjct: 548 AGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRK-MDENGCSRDGC 606

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           ++ ++I+G     E   A  + +EM+ +    D    + ++  L   G    F
Sbjct: 607 IYNTIIRGFLRSNETFGATQLLQEMLAEGFSADVSTTTLIVEMLSDDGLDQSF 659



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 57/123 (46%)

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P    F  L+  +  +   S  L +  +M    I  D    + LI++     R     ++
Sbjct: 148 PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSV 207

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           L ++ + GC+P++ T+N LI G C E     A  + D+   +G + + ++Y  ++ GLCK
Sbjct: 208 LAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCK 267

Query: 341 DGK 343
            G 
Sbjct: 268 VGN 270


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 146/280 (52%), Gaps = 18/280 (6%)

Query: 81  PKEIIFCNVIGFYG--------RARL--------LERALQMFDEMSSFNVQMTVKFFNTL 124
           P E+ FC   GF          R RL         + A+ +F +M       TV  F+ L
Sbjct: 35  PNELSFCCERGFSAFSDRNLSYRERLRSGLVDIKADDAIDLFRDMIHSRPLPTVIDFSRL 94

Query: 125 LNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
            +      + D +  L + ME K ++ +  + +I+I+     R+L  A+    +++K   
Sbjct: 95  FSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGY 154

Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
           +P  +TF TLI GLCLE RV EAL+L + ++ + + KPD     +L+ GLC  G+ + A+
Sbjct: 155 EPNTITFSTLINGLCLEGRVSEALELVDRMVEMGH-KPDLITINTLVNGLCLSGKEAEAM 213

Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
            + ++MV    + +A  Y  +++ + K+G+      +L++M+ER  K ++V Y+ +I G 
Sbjct: 214 LLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGL 273

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           CK    + AF + +EM  KG   N I+YN+++GG C  G+
Sbjct: 274 CKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGR 313



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 134/264 (50%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + +  V+    ++     A+++  +M   N+++    ++ +++     G LD    L
Sbjct: 226 PNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNL 285

Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
           F  ME K ++ +  +YNILI G   + R +D  K+  +M+KR++ P +VTF  LI     
Sbjct: 286 FNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK 345

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
           E ++ EA +L ++++    + PD   + SLI G C    L  A  + + MV    + +  
Sbjct: 346 EGKLREAEELHKEMIH-RGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIR 404

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            ++ LI+   KA R ++   + ++M  RG   ++VTYN LI GFC+      A  +  EM
Sbjct: 405 TFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEM 464

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
             +    N ++Y ++L GLC +G+
Sbjct: 465 VSRKVPPNIVTYKILLDGLCDNGE 488



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 2/243 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIH 160
           A+ + D+M  +  Q     +  +LN     G+     EL + ME + +  DA  Y+I+I 
Sbjct: 212 AMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIID 271

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G      L++A+ +F+EM  + +   ++T+  LI G C   R D+  KL  D+++   + 
Sbjct: 272 GLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIK-RKIN 330

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           P+   F+ LI      G+L  A  + +EM+   I  D   Y+SLI    K    ++   +
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQM 390

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
           +  M  +GC PN  T+N LI+G+CK    +    +  +M  +G  A+ ++YN ++ G C+
Sbjct: 391 VDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 450

Query: 341 DGK 343
            GK
Sbjct: 451 LGK 453



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 150/304 (49%), Gaps = 3/304 (0%)

Query: 40  LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           +K    N++ Y+++I     A  +D+  ++L  +    +I P  + F  +I  + +   L
Sbjct: 291 MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIK-RKINPNVVTFSVLIDSFVKEGKL 349

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
             A ++  EM    +      + +L++       LD+  ++  +M  K   P+  ++NIL
Sbjct: 350 REAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNIL 409

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           I+G   + R++D  ++F +M  R +    VT+ TLI G C   +++ A +L ++ M    
Sbjct: 410 INGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQE-MVSRK 468

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V P+   +  L+ GLC  GE   AL + E++ + K+E+D GIY+ +I  +  A + ++  
Sbjct: 469 VPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAW 528

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +   +  +G KP   TYN +I G CK+     A  +  +M + G   +  +YN+++   
Sbjct: 529 DLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAH 588

Query: 339 CKDG 342
             DG
Sbjct: 589 LGDG 592



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 141/306 (46%), Gaps = 11/306 (3%)

Query: 40  LKPFRYNLLHYDLIITKLGRAK----MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR 95
           LK   +NL    ++I    R +     F  M +I+ +L ++    P  I F  +I     
Sbjct: 116 LKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKII-KLGYE----PNTITFSTLINGLCL 170

Query: 96  ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACS 154
              +  AL++ D M     +  +   NTL+N     GK      L   M +Y   P+A +
Sbjct: 171 EGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVT 230

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           Y  +++    S +   A ++  +M +R ++   V +  +I GLC    +D A  L  + M
Sbjct: 231 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNE-M 289

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
            +  +  +   +  LI G C  G       +  +M++ KI  +   +S LI +  K G+ 
Sbjct: 290 EMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKL 349

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
            E   + KEM  RG  P+++TY +LI GFCKE   + A  ++D M  KGC  N  ++N++
Sbjct: 350 REAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNIL 409

Query: 335 LGGLCK 340
           + G CK
Sbjct: 410 INGYCK 415



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 138/281 (49%), Gaps = 3/281 (1%)

Query: 64  DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT 123
           D+   +   + H +R +P  I F  +     + +  +  L +  +M    +   +   + 
Sbjct: 70  DDAIDLFRDMIH-SRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSI 128

Query: 124 LLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR 182
           ++N    C KL      + +I++    P+  +++ LI+G  +  R+ +A ++ D MV+  
Sbjct: 129 MINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMG 188

Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
            +P L+T  TL+ GLCL  +  EA+ L  D M  Y  +P+   +  ++  +C  G+ +LA
Sbjct: 189 HKPDLITINTLVNGLCLSGKEAEAMLLI-DKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 247

Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
           + +  +M    I++DA  YS +I  L K G  +    +  EM+ +G   N +TYN LI G
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 307

Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           FC    ++    +L +M  +    N ++++V++    K+GK
Sbjct: 308 FCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGK 348



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 121/246 (49%), Gaps = 2/246 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNI 157
           L+ A  +F+EM    +   +  +N L+      G+ D   +L + ++++ ++P+  ++++
Sbjct: 279 LDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSV 338

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI   V   +L +A ++  EM+ R + P  +T+ +LI G C E  +D+A ++  D+M   
Sbjct: 339 LIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMV-DLMVSK 397

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
              P+ + F  LI G C    +   L +  +M    +  D   Y++LI    + G+ N  
Sbjct: 398 GCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVA 457

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             + +EM  R   PN VTY  L+ G C   + E A  I +++     + +   YN+I+ G
Sbjct: 458 KELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHG 517

Query: 338 LCKDGK 343
           +C   K
Sbjct: 518 MCNASK 523



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 122/254 (48%), Gaps = 2/254 (0%)

Query: 89  VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKY 147
           +I  + R R L  A     ++     +     F+TL+N     G++    EL  +++E  
Sbjct: 129 MINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMG 188

Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
             PD  + N L++G  +S +  +A  + D+MV+   QP  VT+G ++  +C   +   A+
Sbjct: 189 HKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAM 248

Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
           +L    M   N+K D   ++ +I GLC  G L  A  +  EM    I  +   Y+ LI  
Sbjct: 249 ELLRK-MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 307

Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
              AGR ++   +L++M +R   PN VT++ LI  F KE     A  +  EM  +G   +
Sbjct: 308 FCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPD 367

Query: 328 PISYNVILGGLCKD 341
            I+Y  ++ G CK+
Sbjct: 368 TITYTSLIDGFCKE 381



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 146/299 (48%), Gaps = 4/299 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ + ++I    +     E +++  ++ H   I P  I + ++I  + +   L++A QM
Sbjct: 332 NVVTFSVLIDSFVKEGKLREAEELHKEMIH-RGIAPDTITYTSLIDGFCKENHLDKANQM 390

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
            D M S      ++ FN L+N      ++D   ELF+ M  + V  D  +YN LI G   
Sbjct: 391 VDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 450

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             +L  A ++F EMV R++ P +VT+  L+ GLC     ++AL++ E I +   ++ D  
Sbjct: 451 LGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEK-SKMELDIG 509

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++  +I G+C   ++  A  +   +    ++     Y+ +I  L K G  +E   + ++M
Sbjct: 510 IYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKM 569

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           +E G  P+  TYN LI     + D   +  +++E+   G   +  +  +++  L  DG+
Sbjct: 570 EEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDML-SDGR 627



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 114/241 (47%), Gaps = 11/241 (4%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  ++++I    +A   D+  ++  ++     +V   + +  +I  +     L  A ++
Sbjct: 402 NIRTFNILINGYCKANRIDDGLELFRKMSL-RGVVADTVTYNTLIQGFCELGKLNVAKEL 460

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           F EM S  V   +  +  LL+     G+ ++  E+F+ +EK  +  D   YNI+IHG   
Sbjct: 461 FQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCN 520

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA----LKLKEDIMRVYNVK 220
           + +++DAW +F  +  + ++P + T+  +I GLC +  + EA     K++ED        
Sbjct: 521 ASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEED-----GHA 575

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PDG  +  LI+     G+ + ++ + EE+ R    +DA     +I  L     K  F  +
Sbjct: 576 PDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDGRLKKSFLDM 635

Query: 281 L 281
           L
Sbjct: 636 L 636


>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 662

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 137/262 (52%), Gaps = 8/262 (3%)

Query: 86  FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145
           + +++     A+ ++R   +  E+  F   MTV   N+L+    + GKL  ++EL  +  
Sbjct: 155 YVSLVDVLALAKDVDRIRFICSEIRKFEFPMTVSPGNSLIK---SFGKLGMVEELLWVWR 211

Query: 146 KY----VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
           K     + P   +YN L++G V +  ++ A +VF+ M   R++P +VT+ T+I G C   
Sbjct: 212 KMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDVVTYNTMIKGYCKAG 271

Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
           +  +AL+ K  +M    ++ D   + ++I+   A  + S  + + +EM    +++    +
Sbjct: 272 QTQKALE-KLRVMETKGLEADKITYMTMIQACYADSDFSSCVALYQEMDEKGLQVPPHAF 330

Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
           S +I  L K G+ NE  A+ + M  +G KPN   Y  LI G+ K    E A  +L  M D
Sbjct: 331 SLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMID 390

Query: 322 KGCKANPISYNVILGGLCKDGK 343
           +G   + ++Y+V++ GLCK+G+
Sbjct: 391 EGFNPDVVTYSVVVNGLCKNGR 412



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 141/335 (42%), Gaps = 39/335 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ- 104
            L  Y+ ++  L  A   D  +++  ++    RI P  + +  +I  Y +A   ++AL+ 
Sbjct: 221 TLYTYNFLMNGLVSAMFVDSAERVF-EVMESGRIKPDVVTYNTMIKGYCKAGQTQKALEK 279

Query: 105 ----------------------------------MFDEMSSFNVQMTVKFFNTLLNPKLT 130
                                             ++ EM    +Q+    F+ ++     
Sbjct: 280 LRVMETKGLEADKITYMTMIQACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGLCK 339

Query: 131 CGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
            GKL+    +F+ M  K   P+   Y +LI G   +  +EDA ++   M+     P +VT
Sbjct: 340 EGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVT 399

Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
           +  ++ GLC   RV+EA+   +   R   +  +   ++SLI GL   G +  A  + EEM
Sbjct: 400 YSVVVNGLCKNGRVEEAMDYFQ-TCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEM 458

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER-GCKPNSVTYNALISGFCKEED 308
                  D+  Y++LI A  K G+ +E  A+ K M+E  GC     TY  LISG  KE  
Sbjct: 459 SEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTVYTYTILISGMFKEHR 518

Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            E A  + D M DKG          +  GLC  GK
Sbjct: 519 NEEALKLWDMMIDKGITPTAACLRALSTGLCLSGK 553



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 146/327 (44%), Gaps = 37/327 (11%)

Query: 53  IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
           +I   G+  M +E+  +  ++K +  I P    +  ++     A  ++ A ++F+ M S 
Sbjct: 193 LIKSFGKLGMVEELLWVWRKMKENG-IEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESG 251

Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDA 171
            ++  V  +NT++      G+  +  E  ++ME K +  D  +Y  +I  C         
Sbjct: 252 RIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDFSSC 311

Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR--------VYNV---- 219
             ++ EM ++ LQ     F  +I GLC E +++E   + E+++R        +Y V    
Sbjct: 312 VALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDG 371

Query: 220 ----------------------KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
                                  PD   ++ ++ GLC  G +  A+   +    + + ++
Sbjct: 372 YAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAIN 431

Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           +  YSSLI  L KAGR +E   + +EM E+GC  +S  YNALI  F K    + A  +  
Sbjct: 432 SMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFK 491

Query: 318 EM-GDKGCKANPISYNVILGGLCKDGK 343
            M  ++GC     +Y +++ G+ K+ +
Sbjct: 492 RMEEEEGCDQTVYTYTILISGMFKEHR 518



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 143/307 (46%), Gaps = 9/307 (2%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH---DTRIVPKEIIFCNVIGFYGRAR 97
           K + +NL  Y  ++  L  AK  D ++ I  +++       + P      ++I  +G+  
Sbjct: 146 KKYTHNLECYVSLVDVLALAKDVDRIRFICSEIRKFEFPMTVSPGN----SLIKSFGKLG 201

Query: 98  LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYN 156
           ++E  L ++ +M    ++ T+  +N L+N  ++   +D  + +F++ME   + PD  +YN
Sbjct: 202 MVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDVVTYN 261

Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
            +I G   + + + A +    M  + L+   +T+ T+I     +      + L ++ M  
Sbjct: 262 TMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDFSSCVALYQE-MDE 320

Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
             ++     F+ +I GLC  G+L+    V E M+R   + +  IY+ LI    K G   +
Sbjct: 321 KGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVED 380

Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
              +L  M + G  P+ VTY+ +++G CK    E A          G   N + Y+ ++ 
Sbjct: 381 AIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLID 440

Query: 337 GLCKDGK 343
           GL K G+
Sbjct: 441 GLGKAGR 447



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 109/239 (45%), Gaps = 13/239 (5%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  +++ Y +++  L +    +E        + +   +   + + ++I   G+A  ++ A
Sbjct: 393 FNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAI-NSMFYSSLIDGLGKAGRVDEA 451

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC--SYNILIH 160
            ++F+EMS          +N L++     GK+D    LF+ ME+    D    +Y ILI 
Sbjct: 452 ERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTVYTYTILIS 511

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G     R E+A K++D M+ + + PT      L  GLCL  +V  A K+ +++       
Sbjct: 512 GMFKEHRNEEALKLWDMMIDKGITPTAACLRALSTGLCLSGKVARACKILDEL------A 565

Query: 221 PDGQVFAS----LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
           P G +  +    +I  LC  G +  A  + + +     E+   I + +I+AL K G+ +
Sbjct: 566 PMGVILDAACEDMINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVGKAD 624


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 157/311 (50%), Gaps = 6/311 (1%)

Query: 33  NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
           N   ++ LKP   N++ Y+ ++  L  A+ ++E +++L ++  D      ++ F  ++ F
Sbjct: 321 NRMPSYGLKP---NVVCYNTLLKGLCSAERWEETEELLAEM-FDKDCPLDDVTFNILVDF 376

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPD 151
           + +  L++R +++ ++M        V  + T++N     G +D    L + M      P+
Sbjct: 377 FCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPN 436

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
             SY I++ G   + R  DA  +  +M+++      +TF TLI  LC +  V++A++L +
Sbjct: 437 TISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLK 496

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
             M V    PD   ++++I GL   G+   AL +   MV   +  +  IYSS+ SAL + 
Sbjct: 497 Q-MLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSRE 555

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           GR N+   +   +++   + ++V YNA+IS  CK  + E A   L  M   GC  N  +Y
Sbjct: 556 GRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTY 615

Query: 332 NVILGGLCKDG 342
            +++ GL  +G
Sbjct: 616 TILIRGLASEG 626



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 149/343 (43%), Gaps = 47/343 (13%)

Query: 37  AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
           A P+ P  Y   ++ ++     R ++ D +  +    +     +P   ++  ++    R 
Sbjct: 115 AVPVPPNAYT--YFPVVRALCARGRIADALAVLDEMPRRGCAPIPP--MYHVILEAACRG 170

Query: 97  RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSY 155
                A+++ +++ +    + V   N +LN     G +D    L + +  +   PD  SY
Sbjct: 171 GGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSY 230

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC---LELRVDEALKLKED 212
           N ++ G  +++R     ++ +EMV+    P +VTF TLI  LC   L  RV E L     
Sbjct: 231 NAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQ--- 287

Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
            M  +   PD +++A++I G+C  G L +A  +   M    ++ +   Y++L+  L  A 
Sbjct: 288 -MVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAE 346

Query: 273 RKNEFPAILKEM-----------------------------------KERGCKPNSVTYN 297
           R  E   +L EM                                    ERGC P+ +TY 
Sbjct: 347 RWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYT 406

Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            +I+GFCKE   + A  +L  M   GCK N ISY ++L GLC 
Sbjct: 407 TVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCS 449



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 119/240 (49%), Gaps = 2/240 (0%)

Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQIMEKYVSPDACSYNILIHGC 162
           ++ +EM        +  FNTL++     G  +R+ E L Q++E   +PD   Y  +I G 
Sbjct: 248 ELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGI 307

Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
                LE A ++ + M    L+P +V + TL+ GLC   R +E  +L  ++    +   D
Sbjct: 308 CKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFD-KDCPLD 366

Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
              F  L+   C  G +   + + E+M+      D   Y+++I+   K G  +E   +LK
Sbjct: 367 DVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLK 426

Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            M   GCKPN+++Y  ++ G C  E +  A  ++ +M  +GC  NPI++N ++  LCK G
Sbjct: 427 SMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKG 486



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 156/334 (46%), Gaps = 38/334 (11%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ ++ +I+ L R  +F+ + ++L Q+       P   ++  +I    +   LE A ++
Sbjct: 261 NIVTFNTLISYLCRNGLFERVHEVLAQMVEHG-CTPDIRMYATIIDGICKEGHLEVAHEI 319

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            + M S+ ++  V  +NTLL    +  + +  +EL  ++ +K    D  ++NIL+     
Sbjct: 320 LNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQ 379

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +  ++   ++ ++M++R   P ++T+ T+I G C E  +DEA+ L +  M     KP+  
Sbjct: 380 NGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKS-MTACGCKPNTI 438

Query: 225 VFASLIKGLCAV-----------------------------------GELSLALGVKEEM 249
            +  ++KGLC+                                    G +  A+ + ++M
Sbjct: 439 SYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQM 498

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
           + +    D   YS++I  L KAG+ +E   +L  M  +G  PN++ Y+++ S   +E   
Sbjct: 499 LVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRI 558

Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
                + D + D   +++ + YN ++  LCK G+
Sbjct: 559 NKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGE 592



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 105/255 (41%), Gaps = 38/255 (14%)

Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
           +N ++      G+L+  + L   +   V P+A +Y  ++       R+ DA  V DEM +
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVP--VPPNAYTYFPVVRALCARGRIADALAVLDEMPR 150

Query: 181 RRLQPTLVTFGTLIYGLC--------------LELR---------------------VDE 205
           R   P    +  ++   C              L  R                     VDE
Sbjct: 151 RGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDE 210

Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
           AL L  D+   +  +PD   + +++KGLC          + EEMVR     +   +++LI
Sbjct: 211 ALHLLRDLPS-FGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLI 269

Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
           S L + G       +L +M E GC P+   Y  +I G CKE   E A  IL+ M   G K
Sbjct: 270 SYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLK 329

Query: 326 ANPISYNVILGGLCK 340
            N + YN +L GLC 
Sbjct: 330 PNVVCYNTLLKGLCS 344



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
           YN ++ G   + +LE A ++   +    + P   T+  ++  LC   R+ +AL + +++ 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAV---PVPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
           R     P   ++  +++  C  G    A+ V E++      +D G  + +++A+   G  
Sbjct: 150 R-RGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSV 208

Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
           +E   +L+++   GC+P+ V+YNA++ G C  + +     +++EM    C  N +++N +
Sbjct: 209 DEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTL 268

Query: 335 LGGLCKDG 342
           +  LC++G
Sbjct: 269 ISYLCRNG 276


>gi|255584082|ref|XP_002532784.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527472|gb|EEF29603.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 487

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 150/298 (50%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y+ +I    R   F+    +L++++ +  I P  + + ++I    R  LL  +L +
Sbjct: 71  DVVTYNTLIDAYSRFVSFNAAYSLLNRMR-EASISPDVVTYNSLIAGAARNCLLLESLNL 129

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
           FDEM +  +   V  +NTL++     GK +   E+  QI    +SP   ++NI+I+G   
Sbjct: 130 FDEMLNMGIVPDVWSYNTLMHCFFKLGKAEEANEVLRQIFGHGLSPCPTTFNIMINGLCK 189

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           +    +A  +F  + +    P L+T+  LI GLC + R+  A  + ++ +      P+  
Sbjct: 190 NGFTSNALMLFRSLKQHGFVPQLITYNILINGLCKDRRLRAARSMLKE-LETSGYVPNAI 248

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + +++K           L + +EM+      D   Y +++  L K GR  E    +++M
Sbjct: 249 TYTTVMKFCFRSRRFKQGLEILQEMIDKGYTFDGFAYCTVVGVLIKTGRLEEATEYMRQM 308

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
            + G + +  +YN LI+ +CK+ + EAA+ +LDE+  +G + +  ++ +++  +CK G
Sbjct: 309 IKNGIEHDLASYNTLINLYCKQGNLEAAYQLLDEIEKEGLQCDEYTHTILINWMCKAG 366



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 1/186 (0%)

Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
           NI I     ++ L  A  V  + ++  + P +VT+ TLI      +  + A  L    MR
Sbjct: 41  NISIASLCKAKELNKAESVIIDGIRLGVLPDVVTYNTLIDAYSRFVSFNAAYSLLNR-MR 99

Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
             ++ PD   + SLI G      L  +L + +EM+   I  D   Y++L+   FK G+  
Sbjct: 100 EASISPDVVTYNSLIAGAARNCLLLESLNLFDEMLNMGIVPDVWSYNTLMHCFFKLGKAE 159

Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
           E   +L+++   G  P   T+N +I+G CK      A  +   +   G     I+YN+++
Sbjct: 160 EANEVLRQIFGHGLSPCPTTFNIMINGLCKNGFTSNALMLFRSLKQHGFVPQLITYNILI 219

Query: 336 GGLCKD 341
            GLCKD
Sbjct: 220 NGLCKD 225



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 138/325 (42%), Gaps = 56/325 (17%)

Query: 21  ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
           AL LF++        + H   P    L+ Y+++I  L + +     + +L +L+  +  V
Sbjct: 196 ALMLFRS-------LKQHGFVP---QLITYNILINGLCKDRRLRAARSMLKELE-TSGYV 244

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  I +  V+ F  R+R  ++ L++  EM                               
Sbjct: 245 PNAITYTTVMKFCFRSRRFKQGLEILQEM------------------------------- 273

Query: 141 FQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200
              ++K  + D  +Y  ++   + + RLE+A +   +M+K  ++  L ++ TLI   C +
Sbjct: 274 ---IDKGYTFDGFAYCTVVGVLIKTGRLEEATEYMRQMIKNGIEHDLASYNTLINLYCKQ 330

Query: 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR-DKIEMDAG 259
             ++ A +L ++I +   ++ D      LI  +C  G +   LG +  M   + +  D+ 
Sbjct: 331 GNLEAAYQLLDEIEK-EGLQCDEYTHTILINWMCKAGNI---LGARRHMQHMNMMGFDSC 386

Query: 260 IYS--SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
           + +   ++  L K G+ +    + + MK R    +S TY++L+   CK   F  A  +L 
Sbjct: 387 LVALNCMVDGLCKNGQIDHAVKLFESMKMR----DSFTYSSLVHNLCKNGRFHRASKLLL 442

Query: 318 EMGDKGCKANPISYNVILGGLCKDG 342
                G K  P +  V++ GL   G
Sbjct: 443 SCLRSGMKILPSAQRVVISGLRYSG 467



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 55/114 (48%)

Query: 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289
           I  LC   EL+ A  V  + +R  +  D   Y++LI A  +    N   ++L  M+E   
Sbjct: 44  IASLCKAKELNKAESVIIDGIRLGVLPDVVTYNTLIDAYSRFVSFNAAYSLLNRMREASI 103

Query: 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            P+ VTYN+LI+G  +      +  + DEM + G   +  SYN ++    K GK
Sbjct: 104 SPDVVTYNSLIAGAARNCLLLESLNLFDEMLNMGIVPDVWSYNTLMHCFFKLGK 157


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 129/245 (52%), Gaps = 2/245 (0%)

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNIL 158
           ++A+++ DEM        +  +N ++N     G++D   E  + +  Y   P+  SYNI+
Sbjct: 9   KQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIV 68

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           + G   + R EDA ++  EM ++   P +VTF  LI  LC +  V+ AL++ E I + Y 
Sbjct: 69  LKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPK-YG 127

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
             P+   +  L+   C   ++  A+   + MV      D   Y++L++AL ++G  +   
Sbjct: 128 CTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAV 187

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            +L ++K++GC P  ++YN +I G  K    + A  +L+EM  KG + + I+Y+ I  GL
Sbjct: 188 ELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGL 247

Query: 339 CKDGK 343
           C++ +
Sbjct: 248 CREDR 252



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 141/298 (47%), Gaps = 3/298 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           +++ Y++++  + +    D+  + L  L       P  + +  V+     A   E A ++
Sbjct: 26  DIVTYNVVVNGICQEGRVDDAIEFLKNLPS-YGCEPNTVSYNIVLKGLCTAERWEDAEEL 84

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
             EM        V  FN L++     G ++   E+ + + KY  +P++ SYN L+H    
Sbjct: 85  MGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCK 144

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
            ++++ A    D MV R   P +V++ TL+  LC    VD A++L    ++     P   
Sbjct: 145 QKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQ-LKDKGCAPVLI 203

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
            + ++I GL   G+   AL +  EMV   ++ D   YS++ + L +  R  +      ++
Sbjct: 204 SYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKV 263

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           ++ G +PN+V YNA+I G CK  +  +A  +   M   GC  N  +Y +++ GL  +G
Sbjct: 264 QDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEG 321



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 130/279 (46%), Gaps = 38/279 (13%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ ++++I+ L R  + +   ++L Q+       P  + +  ++  + + + +++A+  
Sbjct: 96  NVVTFNMLISFLCRKGLVEPALEVLEQIPK-YGCTPNSLSYNPLLHAFCKQKKMDKAMAF 154

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
            D M S      +  +NTLL      G++D   EL  Q+ +K  +P   SYN +I G   
Sbjct: 155 LDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTK 214

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
           + + ++A ++ +EMV + LQP ++T+ T+  GLC E R+++A++    +  +  ++P+  
Sbjct: 215 AGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDM-GIRPNTV 273

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++ ++I GLC   E   A+ +   M+ +                                
Sbjct: 274 LYNAIILGLCKRRETHSAIDLFAYMIGN-------------------------------- 301

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
              GC PN  TY  LI G   E   + A  +LDE+  +G
Sbjct: 302 ---GCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRG 337



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 29/40 (72%)

Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           CK   ++ A  +LDEM DKGC  + ++YNV++ G+C++G+
Sbjct: 3   CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGR 42


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 158/330 (47%), Gaps = 38/330 (11%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y ++I    +  M D    +L+++K  + I P    +  +I    +    E    +F EM
Sbjct: 216 YSIVIDAFCKDGMLDGATSLLNEMKQKS-IPPDIFTYSTLIDALCKLSQWENVRTLFLEM 274

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRL 168
              N+   V  FN++++     GK++  +E+ + M EK V PD  +YN++I G  +  ++
Sbjct: 275 IHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQV 334

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A ++FD M+ + ++P ++++  LI G   + ++DEA+++  +I +   +KP       
Sbjct: 335 DRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQ-KGLKPSIVTCNV 393

Query: 229 LIKGLCAVGELSLALGVKEEMV-----------------------------------RDK 253
           L+ GL  +G    A    +EM+                                   R +
Sbjct: 394 LLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRR 453

Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
            + +  IY+++I  L K G+ ++  A  +++   G  P+ +TY A+ISG+C+E   + A 
Sbjct: 454 EDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAK 513

Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
            +L +M D GC A+  +YNVI+ G  +  K
Sbjct: 514 DMLRKMEDNGCLADNRTYNVIVRGFLRSNK 543



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 143/297 (48%), Gaps = 3/297 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  ++ +I  L +    ++ ++I+  +  +  + P  I +  +I  YG    ++RA ++
Sbjct: 282 NVCTFNSVIDGLCKEGKVEDAEEIMRYMI-EKGVDPDVITYNMIIDGYGLRGQVDRAREI 340

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVV 164
           FD M + +++  +  +N L+N      K+D  M+   +I +K + P   + N+L+HG   
Sbjct: 341 FDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFE 400

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
             R + A   FDEM+     P L T  TL+ G      V+EA+     + R      + Q
Sbjct: 401 LGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRRE-DTNIQ 459

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
           ++ ++I GLC  G+L  A    E++    +  D   Y+++IS   + G  +E   +L++M
Sbjct: 460 IYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKM 519

Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
           ++ GC  ++ TYN ++ GF +          L+E+  K       +  +++  + +D
Sbjct: 520 EDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDIIAED 576



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 138/273 (50%), Gaps = 6/273 (2%)

Query: 75  HDTRIVP-KEIIFCNVI-GFYGRARLLERALQMFDEMSSFNV-QMTVKFFNTLLNPKLTC 131
           H  + +P  ++IF  ++ G +   ++ + A+ +F ++   N+ +     + T++N     
Sbjct: 133 HFKKGIPFNQVIFNTLLRGLFAENKV-KDAVHLFKKLVRENICEPNEVMYGTVMNGLCKK 191

Query: 132 GKLDRMKELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           G   +  +L ++ME+    P+ C Y+I+I        L+ A  + +EM ++ + P + T+
Sbjct: 192 GHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTY 251

Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
            TLI  LC   + +    L  +++ + N+ P+   F S+I GLC  G++  A  +   M+
Sbjct: 252 STLIDALCKLSQWENVRTLFLEMIHL-NIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMI 310

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
              ++ D   Y+ +I      G+ +    I   M  +  +PN ++YN LI+G+ +++  +
Sbjct: 311 EKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQKKID 370

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
            A  +  E+  KG K + ++ NV+L GL + G+
Sbjct: 371 EAMQVCREISQKGLKPSIVTCNVLLHGLFELGR 403



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 125/266 (46%), Gaps = 9/266 (3%)

Query: 77  TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136
           T+ +P  + F  ++      +     + +F E+    + +     + ++N   +C  + R
Sbjct: 66  TKPLPSVVSFSKLLKALVHMKHYSSVVSLFREIHKLRIPVHEFILSIVVN---SCCLMHR 122

Query: 137 MKELFQIM----EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL-QPTLVTFG 191
               F ++    +K +  +   +N L+ G     +++DA  +F ++V+  + +P  V +G
Sbjct: 123 TDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLVRENICEPNEVMYG 182

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
           T++ GLC +    +A  L   +M   + KP+  +++ +I   C  G L  A  +  EM +
Sbjct: 183 TVMNGLCKKGHTQKAFDLLR-LMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQ 241

Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
             I  D   YS+LI AL K  +      +  EM      PN  T+N++I G CKE   E 
Sbjct: 242 KSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVED 301

Query: 312 AFTILDEMGDKGCKANPISYNVILGG 337
           A  I+  M +KG   + I+YN+I+ G
Sbjct: 302 AEEIMRYMIEKGVDPDVITYNMIIDG 327



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 118/252 (46%), Gaps = 1/252 (0%)

Query: 93  YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-D 151
           +   + L+ A  +F +M       +V  F+ LL   +       +  LF+ + K   P  
Sbjct: 47  FENVKCLDDAFSLFRQMVRTKPLPSVVSFSKLLKALVHMKHYSSVVSLFREIHKLRIPVH 106

Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
               +I+++ C +  R +  + V     K+ +    V F TL+ GL  E +V +A+ L +
Sbjct: 107 EFILSIVVNSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFK 166

Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
            ++R    +P+  ++ +++ GLC  G    A  +   M +   + +  IYS +I A  K 
Sbjct: 167 KLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKD 226

Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
           G  +   ++L EMK++   P+  TY+ LI   CK   +E   T+  EM       N  ++
Sbjct: 227 GMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTF 286

Query: 332 NVILGGLCKDGK 343
           N ++ GLCK+GK
Sbjct: 287 NSVIDGLCKEGK 298


>gi|147791423|emb|CAN76850.1| hypothetical protein VITISV_005998 [Vitis vinifera]
          Length = 340

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 145/306 (47%), Gaps = 6/306 (1%)

Query: 41  KPFRYNLLHYDLIITKLGRAKMFDEMQQIL-HQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
           K FR    +Y+  +  L +AK F  ++ IL HQ +++   +  E+    ++  YG+A + 
Sbjct: 12  KRFRSRYGYYEKAVLTLAKAKKFSFIEDILEHQKQYNE--ISTEVFAVRLMTLYGKAGMF 69

Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY--VSPDACSYNI 157
           E A ++FDE    N + TV  FN LL+  +   K D++   FQ +     V PD  SYNI
Sbjct: 70  EHAHKLFDEXPKLNCERTVVSFNALLSVCVXSKKFDKIDGFFQELPGNLGVVPDVVSYNI 129

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +++       L+ A  V DEM K  L+P L+TF TL+          +  K+  D+M+  
Sbjct: 130 IVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIW-DLMKKN 188

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
           NV P+ + + + ++G+ +   +S A+ + +EM    I+ D    +SL+     AG   E 
Sbjct: 189 NVAPNVRSYNAKLRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNLEEA 248

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
                E+      P   TY  LI    ++ DF+ A  +  E+  +     P     +L G
Sbjct: 249 KRWYSEIARNELPPVRATYMTLIPFLVEKGDFDMATELCKEVCSRRWLIEPALLQQVLEG 308

Query: 338 LCKDGK 343
           L K+ K
Sbjct: 309 LVKESK 314


>gi|222423065|dbj|BAH19514.1| AT3G04130 [Arabidopsis thaliana]
          Length = 508

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 161/336 (47%), Gaps = 18/336 (5%)

Query: 11  LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
           L R + D + AL + K          A   K  +++   YD+ +  LG+AK +D M++ +
Sbjct: 94  LHRFRDDWRSALGILK---------WAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFV 144

Query: 71  HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130
            +++ D  +    +    ++  +  A   E A+ +FD +  F ++   +  N LL+    
Sbjct: 145 ERMRGDKLVTLNTV--AKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCK 202

Query: 131 CGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
             ++++ + +   ++ +++P+A ++NI IHG   + R+E+A     EM     +P ++++
Sbjct: 203 EKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISY 262

Query: 191 GTLIYGLCLELRVDEALKLKEDI--MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
            T+I   C +    E +K+ E +  M      P+   + +++  L A  E   AL V   
Sbjct: 263 TTIIRCYCQQF---EFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATR 319

Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK-EMKERGCKPNSVTYNALISGFCKEE 307
           M R   + D+  Y+ LI  L +AGR  E   + + EM E G   N+ TYN++I+ +C  +
Sbjct: 320 MKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHD 379

Query: 308 DFEAAFTILDEMGDKG-CKANPISYNVILGGLCKDG 342
           + + A  +L EM     C  +  +Y  +L    K G
Sbjct: 380 EEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRG 415



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 14/217 (6%)

Query: 133 KLDRMKELFQIM--EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
           K DRMKE  + M  +K V+ +  +   ++     +   E+A  +FD + +  L+    + 
Sbjct: 136 KWDRMKEFVERMRGDKLVTLNTVAK--IMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESM 193

Query: 191 GTLIYGLCLELRVDEA----LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
             L+  LC E RV++A    L+LK       ++ P+   F   I G C    +  AL   
Sbjct: 194 NLLLDTLCKEKRVEQARVVLLQLKS------HITPNAHTFNIFIHGWCKANRVEEALWTI 247

Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
           +EM           Y+++I    +     +   +L EM+  G  PNS+TY  ++S    +
Sbjct: 248 QEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQ 307

Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           ++FE A  +   M   GCK + + YN ++  L + G+
Sbjct: 308 KEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGR 344



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 124/306 (40%), Gaps = 46/306 (15%)

Query: 51  DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS 110
           +L++  L + K  ++ + +L QLK  + I P    F   I  + +A  +E AL    EM 
Sbjct: 194 NLLLDTLCKEKRVEQARVVLLQLK--SHITPNAHTFNIFIHGWCKANRVEEALWTIQEMK 251

Query: 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMK--ELFQIMEKYVSP------------------ 150
               +  V  + T++  +  C + + +K  E+   ME   SP                  
Sbjct: 252 GHGFRPCVISYTTII--RCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKE 309

Query: 151 ------------------DACSYNILIHGCVVSRRLEDAWKVFD-EMVKRRLQPTLVTFG 191
                             D+  YN LIH    + RLE+A +VF  EM +  +     T+ 
Sbjct: 310 FEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYN 369

Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG--VKEEM 249
           ++I   C     D+A++L +++       PD   +  L++     G++ + +G  +KE +
Sbjct: 370 SMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDV-VEVGKLLKEMV 428

Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
            +  + +D   Y+ LI  L +A        + +EM  +   P   T   L+    K+   
Sbjct: 429 TKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHRTCLLLLEEVKKKNMH 488

Query: 310 EAAFTI 315
           E+A  I
Sbjct: 489 ESAERI 494



 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 93/215 (43%), Gaps = 4/215 (1%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           FR  ++ Y  II    +   F ++ ++L +++ +    P  I +  ++      +  E A
Sbjct: 255 FRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGS-PPNSITYTTIMSSLNAQKEFEEA 313

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM--EKYVSPDACSYNILIH 160
           L++   M     +    F+N L++     G+L+  + +F++   E  VS +  +YN +I 
Sbjct: 314 LRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIA 373

Query: 161 GCVVSRRLEDAWKVFDEMVKRRL-QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
                   + A ++  EM    L  P + T+  L+        V E  KL ++++  +++
Sbjct: 374 MYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHL 433

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
             D   +  LI+ LC       A  + EEM+   I
Sbjct: 434 SLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDI 468


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 155/332 (46%), Gaps = 36/332 (10%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N+  Y+ II  L +   +  +  +++++  D++I+P  +IF  ++    +  ++  A  +
Sbjct: 248 NVSTYNSIIHGLCKFSEWKHVATLMNEMV-DSKIMPNVVIFTTLVDALCKEGMVTIAHDV 306

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
            D M    V+  V  +  L++      ++D   ++F  M  K  +P+  SY+ LI+G   
Sbjct: 307 VDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCK 366

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM---------- 214
            +R++ A  +F+EM +R L P +VT+ TLI+GLC   R+ +A+ L  +++          
Sbjct: 367 IQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVT 426

Query: 215 -RVY-----------------------NVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
            R+                        N+ PD Q +  +I G+C VGEL  A  +   + 
Sbjct: 427 YRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLS 486

Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
              +  D   Y+ +I+ L   G   E   + +EM   GC P+  TYN +  GF +  +  
Sbjct: 487 SKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETL 546

Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
           +A  +L EM  +G  A+  +  +I+  L  DG
Sbjct: 547 SAIQLLQEMLGRGFSADASTITLIVEMLSDDG 578



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 130/299 (43%), Gaps = 43/299 (14%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  + F  ++      +     L +  +M S  +   V     ++N   +   L+R+   
Sbjct: 72  PSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVIN---SFCHLNRVDFG 128

Query: 141 FQIMEKYV----SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
           F ++ K       PD  ++  LI G  V  ++ +A  +FD+MV    QP  VT+GTLI+G
Sbjct: 129 FSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHG 188

Query: 197 LCL-----------------------------------ELRVDEALKLKEDIMRVYNVKP 221
           LC                                    + +V+EAL +  + M    + P
Sbjct: 189 LCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSE-MIAKGISP 247

Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
           +   + S+I GLC   E      +  EMV  KI  +  I+++L+ AL K G       ++
Sbjct: 248 NVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVV 307

Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
             M +RG +P+ VTY AL+ G C   + + A  + D M  KGC  N ISY+ ++ G CK
Sbjct: 308 DVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCK 366



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 121/244 (49%), Gaps = 2/244 (0%)

Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
            AL +FD+M     Q     + TL++     G       L + M +K   P+  +YN +I
Sbjct: 162 EALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTII 221

Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
                 R++ +A  +F EM+ + + P + T+ ++I+GLC          L  +++    +
Sbjct: 222 DCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVD-SKI 280

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
            P+  +F +L+  LC  G +++A  V + M++  +E D   Y++L+         +E   
Sbjct: 281 MPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADK 340

Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
           +   M  +GC PN ++Y+ LI+G+CK +  + A  + +EM  +    N ++YN ++ GLC
Sbjct: 341 VFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLC 400

Query: 340 KDGK 343
             G+
Sbjct: 401 HVGR 404



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 120/245 (48%), Gaps = 2/245 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNI 157
           ++ AL  F+ M       +V  F  +L           +  L + M+    P D  +  I
Sbjct: 55  IDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAI 114

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           +I+      R++  + V  ++ K   QP   TF TLI GLC+E ++ EAL L  D M   
Sbjct: 115 VINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLF-DKMVGE 173

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             +P+G  + +LI GLC VG    A+ +   MV+   E +   Y+++I  LFK  + NE 
Sbjct: 174 GFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEA 233

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
             I  EM  +G  PN  TYN++I G CK  +++   T+++EM D     N + +  ++  
Sbjct: 234 LNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDA 293

Query: 338 LCKDG 342
           LCK+G
Sbjct: 294 LCKEG 298



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 118/240 (49%), Gaps = 2/240 (0%)

Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
           A+++   M   N +  V  +NT+++      +++    +F +++ K +SP+  +YN +IH
Sbjct: 198 AIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIH 257

Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
           G       +    + +EMV  ++ P +V F TL+  LC E  V  A  +  D+M    V+
Sbjct: 258 GLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVV-DVMIQRGVE 316

Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
           PD   + +L+ G C   E+  A  V + MVR     +   YS+LI+   K  R ++   +
Sbjct: 317 PDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYL 376

Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
            +EM +R   PN VTYN LI G C       A  +  EM   G   + ++Y ++L  LCK
Sbjct: 377 FEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCK 436



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 128/264 (48%), Gaps = 2/264 (0%)

Query: 81  PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
           P  I +  +I    + R +  AL +F EM +  +   V  +N++++      +   +  L
Sbjct: 212 PNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATL 271

Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
             ++++  + P+   +  L+        +  A  V D M++R ++P +VT+  L+ G CL
Sbjct: 272 MNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCL 331

Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
              +DEA K+ + ++R     P+   +++LI G C +  +  A+ + EEM + ++  +  
Sbjct: 332 RSEMDEADKVFDTMVR-KGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIV 390

Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
            Y++LI  L   GR  +  A+  EM   G  P+ VTY  L+   CK    + A  +L  +
Sbjct: 391 TYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAI 450

Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
                  +  SYN+++ G+C+ G+
Sbjct: 451 EGSNLAPDIQSYNIVIDGMCRVGE 474



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 3/239 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y  +I    + +  D+   +  ++     +VP  + +  +I        L  A+ +
Sbjct: 353 NVISYSTLINGYCKIQRIDKAMYLFEEMCQ-RELVPNIVTYNTLIHGLCHVGRLRDAIAL 411

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
           F EM +      +  +  LL+       LD+   + + +E   ++PD  SYNI+I G   
Sbjct: 412 FHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCR 471

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
              LE A  +F  +  + L P + T+  +I GLCL+  + EA KL  + M      PD  
Sbjct: 472 VGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFRE-MNTDGCSPDDC 530

Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
            +  + +G     E   A+ + +EM+      DA   + ++  L   G       IL E
Sbjct: 531 TYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDDGLDQSVKQILHE 589


>gi|255660986|gb|ACU25662.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 376

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 128/245 (52%), Gaps = 1/245 (0%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL 158
           ++ A +++ E+    V      +N +LN      K+    EL+++M    +    S+NI+
Sbjct: 6   IDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVSSFNIM 65

Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
           + G   + ++++   +++ M K       +T+G L++G C    +D++L + E   +   
Sbjct: 66  MRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGG 125

Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
           V  D   ++++I GLC    L  A+ V   M++   + +A +Y++LI+ L  A +  +  
Sbjct: 126 V-LDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAI 184

Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
            + +EM    C PN +TYN LI+G CK E F  A+ ++ E+ DKG     I+Y++++ GL
Sbjct: 185 RVFREMGTMHCSPNIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGL 244

Query: 339 CKDGK 343
           C D K
Sbjct: 245 CLDHK 249



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 116/242 (47%), Gaps = 37/242 (15%)

Query: 99  LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNI 157
           L+RA+ + + M     +     +NTL+N  +   K +    +F+ M   + SP+  +YN 
Sbjct: 145 LDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPNIITYNT 204

Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
           LI+G   +    +A+ +  E++ + L P ++T+  L+ GLCL+ +V++AL+L   +    
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTS-K 263

Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
             KPD Q+   LI GLC+VG++ LAL +  +M R K                        
Sbjct: 264 GFKPDVQMHNVLIHGLCSVGKMQLALSLYFDMNRWK------------------------ 299

Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
                      C PN V++N L+ GF K+ D   A  I   +   G + + ISYN+ L G
Sbjct: 300 -----------CAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYNITLKG 348

Query: 338 LC 339
           LC
Sbjct: 349 LC 350



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 134/269 (49%), Gaps = 3/269 (1%)

Query: 76  DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
           ++++ P  +++  ++  Y R   ++   ++++ M S     +V  FN ++      GK+D
Sbjct: 18  ESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMRGLFDNGKVD 76

Query: 136 RMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
            +  ++++M+K     D+ +Y IL+HG   +  ++ +  V +   ++        +  +I
Sbjct: 77  EVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMI 136

Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
            GLC E  +D A+ +   +++    KP+  V+ +LI GL    +   A+ V  EM     
Sbjct: 137 NGLCKEANLDRAVSVLNGMIKS-GCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHC 195

Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
             +   Y++LI+ L K     E   ++KE+ ++G  P  +TY+ L+ G C +   E A  
Sbjct: 196 SPNIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQ 255

Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
           + +++  KG K +   +NV++ GLC  GK
Sbjct: 256 LWNQVTSKGFKPDVQMHNVLIHGLCSVGK 284



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 87/168 (51%), Gaps = 2/168 (1%)

Query: 46  NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
           N++ Y+ +I  L + +MF E   ++ +L  D  + P  I +  ++        +E+ALQ+
Sbjct: 198 NIITYNTLINGLCKNEMFGEAYNLVKELL-DKGLNPGVITYSMLMKGLCLDHKVEKALQL 256

Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
           +++++S   +  V+  N L++   + GK+     L+  M ++  +P+  S+N L+ G   
Sbjct: 257 WNQVTSKGFKPDVQMHNVLIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYK 316

Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
              + +A  ++  +++  L+P ++++   + GLC   R+ +A+    D
Sbjct: 317 DGDIRNALVIWARILRNGLEPDIISYNITLKGLCSCNRISDAILFLHD 364



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 94/206 (45%), Gaps = 3/206 (1%)

Query: 50  YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
           Y+ +I  L  A  F++  ++  ++       P  I +  +I    +  +   A  +  E+
Sbjct: 167 YNTLINGLVGASKFEDAIRVFREMG-TMHCSPNIITYNTLINGLCKNEMFGEAYNLVKEL 225

Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
               +   V  ++ L+       K+++  +L+ Q+  K   PD   +N+LIHG     ++
Sbjct: 226 LDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNVLIHGLCSVGKM 285

Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
           + A  ++ +M + +  P LV+  TL+ G   +  +  AL +   I+R   ++PD   +  
Sbjct: 286 QLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILR-NGLEPDIISYNI 344

Query: 229 LIKGLCAVGELSLALGVKEEMVRDKI 254
            +KGLC+   +S A+    + V  KI
Sbjct: 345 TLKGLCSCNRISDAILFLHDAVTKKI 370


>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
          Length = 447

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 163/365 (44%), Gaps = 45/365 (12%)

Query: 9   ACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQ 68
           + L RL      ALQ F   + N +    H    F       DL I    R  +   +  
Sbjct: 55  SVLKRLWNHGPKALQFFHFLD-NHHREYVHDASSF-------DLAIDIAARLHLHPTVWS 106

Query: 69  ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
           ++H+++   RI P    F  V   Y  A   ++A+++F  M        +  FNT+L+  
Sbjct: 107 LIHRMR-SLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVL 165

Query: 129 LTCGKLDRMKELFQIMEKYVSPDACSYNILIHG-CVVSR--------------------- 166
               ++++  ELF+ +    S D  +YN++++G C++ R                     
Sbjct: 166 CKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKTLEVLKEMVERGINPNLT 225

Query: 167 -------------RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
                        ++  AW+ F EM KR  +  +VT+ T+++G  +   +  A  + +++
Sbjct: 226 TYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEM 285

Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
           +R   V P    + ++I+ LC    +  A+ + EEMVR   E +   Y+ LI  LF AG 
Sbjct: 286 IR-EGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGE 344

Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
            +    +++ M+  GC+PN  TYN +I  + +  + E A  + ++MG   C  N  +YN+
Sbjct: 345 FSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNI 404

Query: 334 ILGGL 338
           ++ G+
Sbjct: 405 LISGM 409



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 127/279 (45%), Gaps = 6/279 (2%)

Query: 68  QILHQL-KHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126
           Q  H L  H    V     F   I    R  L      +   M S  +  + K F  +  
Sbjct: 69  QFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAE 128

Query: 127 PKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
              + GK D+  +LF  M ++    D  S+N ++     S+R+E A+++F   ++ R   
Sbjct: 129 RYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELF-RALRGRFSV 187

Query: 186 TLVTFGTLIYGLCLELRVDEALK-LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244
             VT+  ++ G CL  R  + L+ LKE + R   + P+   + +++KG    G++  A  
Sbjct: 188 DTVTYNVILNGWCLIKRTPKTLEVLKEMVER--GINPNLTTYNTMLKGFFRAGQIRHAWE 245

Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304
              EM +   E+D   Y++++     AG       +  EM   G  P+  TYNA+I   C
Sbjct: 246 FFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLC 305

Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
           K+++ E A  + +EM  +G + N  +YNV++ GL   G+
Sbjct: 306 KKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGE 344



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 113/237 (47%), Gaps = 7/237 (2%)

Query: 43  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
           F  + + Y++I+      K   +  ++L ++  +  I P    +  ++  + RA  +  A
Sbjct: 185 FSVDTVTYNVILNGWCLIKRTPKTLEVLKEMV-ERGINPNLTTYNTMLKGFFRAGQIRHA 243

Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHG 161
            + F EM   + ++ V  + T+++     G++ R + +F +++ + V P   +YN +I  
Sbjct: 244 WEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQV 303

Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN--V 219
                 +E+A  +F+EMV+R  +P + T+  LI GL       E  + +E + R+ N   
Sbjct: 304 LCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGL---FHAGEFSRGEELMQRMENEGC 360

Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
           +P+ Q +  +I+      E+  ALG+ E+M       +   Y+ LIS +F   R  +
Sbjct: 361 EPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSED 417


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.324    0.140    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,316,571,724
Number of Sequences: 23463169
Number of extensions: 213283152
Number of successful extensions: 618702
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5951
Number of HSP's successfully gapped in prelim test: 5130
Number of HSP's that attempted gapping in prelim test: 474590
Number of HSP's gapped (non-prelim): 63125
length of query: 344
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 201
effective length of database: 9,003,962,200
effective search space: 1809796402200
effective search space used: 1809796402200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 77 (34.3 bits)