BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038490
(344 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9MAG8|PPR79_ARATH Putative pentatricopeptide repeat-containing protein At1g53330
OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1
Length = 471
Score = 384 bits (987), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/336 (57%), Positives = 250/336 (74%), Gaps = 4/336 (1%)
Query: 1 KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRA 60
K SS RLA L R + DP A++LF+NP+P +P +PFRY+LL YD+IITKLG +
Sbjct: 5 KSVSSFRLASLLRRENDPSAAMKLFRNPDPE----STNPKRPFRYSLLCYDIIITKLGGS 60
Query: 61 KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
KMFDE+ Q+L LK DTRIVP EIIFCNVI F+GR +L RAL MFDEM + Q TVK
Sbjct: 61 KMFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQRTVKS 120
Query: 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
N+LL+ L CG+L++MKE ++++ PDAC+YNILIHGC S +DA K+FDEMVK
Sbjct: 121 LNSLLSALLKCGELEKMKERLSSIDEFGKPDACTYNILIHGCSQSGCFDDALKLFDEMVK 180
Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
++++PT VTFGTLI+GLC + RV EALK+K D+++VY V+P ++ASLIK LC +GELS
Sbjct: 181 KKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQIGELS 240
Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
A +K+E KI++DA IYS+LIS+L KAGR NE IL+EM E+GCKP++VTYN LI
Sbjct: 241 FAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLI 300
Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
+GFC E D E+A +LDEM +KG K + ISYN+ILG
Sbjct: 301 NGFCVENDSESANRVLDEMVEKGLKPDVISYNMILG 336
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 11/169 (6%)
Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEA----LKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
KR + +L+ + +I L DE L LK D + P +F ++I
Sbjct: 40 KRPFRYSLLCYDIIITKLGGSKMFDELDQVLLHLKTDT----RIVPTEIIFCNVI-NFFG 94
Query: 236 VGEL-SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
G+L S AL + +EM + + + +SL+SAL K G + L + E G KP++
Sbjct: 95 RGKLPSRALHMFDEMPQYRCQRTVKSLNSLLSALLKCGELEKMKERLSSIDEFG-KPDAC 153
Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
TYN LI G + F+ A + DEM K K +++ ++ GLCKD +
Sbjct: 154 TYNILIHGCSQSGCFDDALKLFDEMVKKKVKPTGVTFGTLIHGLCKDSR 202
>sp|Q9LQQ1|PPR20_ARATH Pentatricopeptide repeat-containing protein At1g07740,
mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2
SV=1
Length = 459
Score = 168 bits (426), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 181/326 (55%), Gaps = 13/326 (3%)
Query: 16 KDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 75
+DP+ AL LF + FR++ Y +I KL +++ FD + QIL +++
Sbjct: 60 EDPEEALSLF----------HQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRY 109
Query: 76 DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
+ +E +F +I YG+A +++A+ +F +++SF+ T++ NTL+N + G+L+
Sbjct: 110 RN-VRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELE 168
Query: 136 RMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
+ K F + + P++ S+NILI G + E A KVFDEM++ +QP++VT+ +LI
Sbjct: 169 KAKSFFDGAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLI 228
Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
LC + +A L ED+++ ++P+ F L+KGLC GE + A + +M
Sbjct: 229 GFLCRNDDMGKAKSLLEDMIK-KRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGC 287
Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
+ Y L+S L K GR +E +L EMK+R KP+ V YN L++ C E A+
Sbjct: 288 KPGLVNYGILMSDLGKRGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYR 347
Query: 315 ILDEMGDKGCKANPISYNVILGGLCK 340
+L EM KGCK N +Y +++ G C+
Sbjct: 348 VLTEMQMKGCKPNAATYRMMIDGFCR 373
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 112/245 (45%), Gaps = 10/245 (4%)
Query: 61 KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
K+FDEM ++ + P + + ++IGF R + +A + ++M ++
Sbjct: 207 KVFDEMLEM--------EVQPSVVTYNSLIGFLCRNDDMGKAKSLLEDMIKKRIRPNAVT 258
Query: 121 FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
F L+ G+ + K+L ME + P +Y IL+ R+++A + EM
Sbjct: 259 FGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGKRGRIDEAKLLLGEMK 318
Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
KRR++P +V + L+ LC E RV EA ++ + M++ KP+ + +I G C + +
Sbjct: 319 KRRIKPDVVIYNILVNHLCTECRVPEAYRVLTE-MQMKGCKPNAATYRMMIDGFCRIEDF 377
Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
L V M+ + + +++ L K G + +L+ M ++ S + L
Sbjct: 378 DSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGNLDHACFVLEVMGKKNLSFGSGAWQNL 437
Query: 300 ISGFC 304
+S C
Sbjct: 438 LSDLC 442
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 169/323 (52%), Gaps = 13/323 (4%)
Query: 21 ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
AL LFK + E ++P N++ Y +I+ L + + Q+L + + +I
Sbjct: 279 ALNLFK-------EMETKGIRP---NVVTYSSLISCLCSYGRWSDASQLLSDMI-EKKIN 327
Query: 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
P + F +I + + A +++D+M ++ + +N+L+N +LD+ K++
Sbjct: 328 PNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQM 387
Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
F+ M K PD +YN LI G S+R+ED ++F EM R L VT+ TLI GL
Sbjct: 388 FEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 447
Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
+ D A K+ + M V PD ++ L+ GLC G+L AL V + M + +I++D
Sbjct: 448 DGDCDNAQKVFKQ-MVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIY 506
Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
IY+++I + KAG+ ++ + + +G KPN VTYN +ISG C + + A+ +L +M
Sbjct: 507 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 566
Query: 320 GDKGCKANPISYNVILGGLCKDG 342
+ G N +YN ++ +DG
Sbjct: 567 KEDGPLPNSGTYNTLIRAHLRDG 589
Score = 128 bits (321), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 149/299 (49%), Gaps = 3/299 (1%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
NL+ Y +++ L + D +L++++ +I +IF +I + R ++ AL +
Sbjct: 224 NLVTYGVVVNGLCKRGDTDLALNLLNKMEA-AKIEADVVIFNTIIDSLCKYRHVDDALNL 282
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
F EM + ++ V +++L++ + G+ +L M EK ++P+ ++N LI V
Sbjct: 283 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 342
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
+ +A K++D+M+KR + P + T+ +L+ G C+ R+D+A ++ E M + PD
Sbjct: 343 EGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFE-FMVSKDCFPDVV 401
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
+ +LIKG C + + EM + D Y++LI LF G + + K+M
Sbjct: 402 TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM 461
Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
G P+ +TY+ L+ G C E A + D M K + Y ++ G+CK GK
Sbjct: 462 VSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 520
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 154/330 (46%), Gaps = 36/330 (10%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
+++ ++ +++ + + K FD + + +++ IV + +I + R + AL +
Sbjct: 84 SIVEFNKLLSAIAKMKKFDVVISLGEKMQR-LEIVHGLYTYNILINCFCRRSQISLALAL 142
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
+M + ++ ++LLN ++ D + + Q++E PD ++ LIHG +
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD---------EALKLKEDI-- 213
+ +A + D MV+R QP LVT+G ++ GLC D EA K++ D+
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262
Query: 214 -----------------------MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
M ++P+ ++SLI LC+ G S A + +M+
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322
Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
KI + +++LI A K G+ E + +M +R P+ TYN+L++GFC + +
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 382
Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCK 340
A + + M K C + ++YN ++ G CK
Sbjct: 383 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCK 412
Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 138/268 (51%), Gaps = 2/268 (0%)
Query: 77 TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD- 135
+R +P + F ++ + + + + + ++M + + +N L+N ++
Sbjct: 79 SRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISL 138
Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
+ L ++M+ P + + L++G +R+ DA + D+MV+ +P +TF TLI+
Sbjct: 139 ALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 198
Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
GL L + EA+ L D M +P+ + ++ GLC G+ LAL + +M KIE
Sbjct: 199 GLFLHNKASEAVALV-DRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIE 257
Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
D I++++I +L K ++ + KEM+ +G +PN VTY++LIS C + A +
Sbjct: 258 ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQL 317
Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
L +M +K N +++N ++ K+GK
Sbjct: 318 LSDMIEKKINPNLVTFNALIDAFVKEGK 345
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 123/270 (45%), Gaps = 20/270 (7%)
Query: 72 QLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131
Q K + RI P I C + ++GRA F S + +L L
Sbjct: 22 QGKGNPRIAPSSIDLCGMC-YWGRA---------FSSGSGD--------YREILRNGLHD 63
Query: 132 GKLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
KLD LF M K P +N L+ ++ + + ++M + + L T+
Sbjct: 64 MKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTY 123
Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
LI C ++ AL L +M++ +P +SL+ G C +S A+ + ++MV
Sbjct: 124 NILINCFCRRSQISLALALLGKMMKL-GYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 182
Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
D +++LI LF + +E A++ M +RGC+PN VTY +++G CK D +
Sbjct: 183 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTD 242
Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCK 340
A +L++M +A+ + +N I+ LCK
Sbjct: 243 LALNLLNKMEAAKIEADVVIFNTIIDSLCK 272
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 108/211 (51%), Gaps = 4/211 (1%)
Query: 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
P + + +I + +++ +E ++F EMS + + TL+ G D +++
Sbjct: 398 PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 457
Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
F Q++ V PD +Y+IL+ G + +LE A +VFD M K ++ + + T+I G+C
Sbjct: 458 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 517
Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
+VD+ L + + VKP+ + ++I GLC+ L A + ++M D ++G
Sbjct: 518 AGKVDDGWDLFCS-LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSG 576
Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCK 290
Y++LI A + G K +++EM R C+
Sbjct: 577 TYNTLIRAHLRDGDKAASAELIREM--RSCR 605
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 173/330 (52%), Gaps = 13/330 (3%)
Query: 15 QKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 74
+KD K A++L+ D+ +P N+ ++++I+ L + D+ +I ++K
Sbjct: 232 EKDHKTAMELWDRL---LEDSSVYP------NVKTHNIMISGLSKCGRVDDCLKIWERMK 282
Query: 75 HDTRIVPKEI-IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133
+ R K++ + ++I A +++A +F+E+ + V +NT+L CGK
Sbjct: 283 QNER--EKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGK 340
Query: 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
+ EL++IME S + SYNILI G + + ++++A ++ M + T+G
Sbjct: 341 IKESLELWRIMEHKNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIF 400
Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
I+GLC+ V++AL + +++ D +AS+I LC L A + +EM +
Sbjct: 401 IHGLCVNGYVNKALGVMQEV-ESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHG 459
Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
+E+++ + ++LI L + R E L+EM + GC+P V+YN LI G CK F A
Sbjct: 460 VELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEAS 519
Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
+ EM + G K + +Y+++L GLC+D K
Sbjct: 520 AFVKEMLENGWKPDLKTYSILLCGLCRDRK 549
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 173/370 (46%), Gaps = 48/370 (12%)
Query: 11 LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
L + +K+P+ A LF + +P + ++ + Y I+ +L +M + + +I+
Sbjct: 16 LLKSEKNPRAAFALFDSATRHPG---------YAHSAVVYHHILRRLSETRMVNHVSRIV 66
Query: 71 HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS-FNVQMTVKFFNTLLNPKL 129
+L E + +VI YG+ + ++AL +F M F + ++ +NTLLN +
Sbjct: 67 -ELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFV 125
Query: 130 TCGKLDRMKELFQIMEKY-VSPDACSYNILI----------------------------- 159
+ +++ LF E V+P+ +YN+LI
Sbjct: 126 EAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVF 185
Query: 160 -HGCVV-----SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
+ V+ + +L+DA ++FDEM +R + P + + LI G E A++L + +
Sbjct: 186 SYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRL 245
Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
+ +V P+ + +I GL G + L + E M +++ E D YSSLI L AG
Sbjct: 246 LEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGN 305
Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
++ ++ E+ ER + VTYN ++ GFC+ + + + M K N +SYN+
Sbjct: 306 VDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKN-SVNIVSYNI 364
Query: 334 ILGGLCKDGK 343
++ GL ++GK
Sbjct: 365 LIKGLLENGK 374
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 160/336 (47%), Gaps = 36/336 (10%)
Query: 43 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
F+ ++ Y +I L +A D+ ++ ++ + + P + +I + + + + A
Sbjct: 180 FKPDVFSYSTVINDLAKAGKLDDALELFDEMS-ERGVAPDVTCYNILIDGFLKEKDHKTA 238
Query: 103 LQMFDEM-SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV-SPDACSYNILIH 160
++++D + +V VK N +++ CG++D ++++ M++ D +Y+ LIH
Sbjct: 239 MELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIH 298
Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK---------- 210
G + ++ A VF+E+ +R+ +VT+ T++ G C ++ E+L+L
Sbjct: 299 GLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVN 358
Query: 211 -----------------EDIMRVYNVKP------DGQVFASLIKGLCAVGELSLALGVKE 247
++ ++ + P D + I GLC G ++ ALGV +
Sbjct: 359 IVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQ 418
Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
E+ +D Y+S+I L K R E ++KEM + G + NS NALI G ++
Sbjct: 419 EVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDS 478
Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
A L EMG GC+ +SYN+++ GLCK GK
Sbjct: 479 RLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGK 514
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 141/297 (47%), Gaps = 7/297 (2%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI--IFCNVIGFYGRARLLERAL 103
N++ Y+++I L DE I + K IF + + G + +AL
Sbjct: 358 NIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNG---YVNKAL 414
Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
+ E+ S + V + ++++ +L+ L + M K+ V ++ N LI G
Sbjct: 415 GVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGL 474
Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
+ RL +A EM K +PT+V++ LI GLC + EA ++++ KPD
Sbjct: 475 IRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLE-NGWKPD 533
Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
+ ++ L+ GLC ++ LAL + + ++ +E D +++ LI L G+ ++ ++
Sbjct: 534 LKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMA 593
Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
M+ R C N VTYN L+ GF K D A I M G + + ISYN I+ GLC
Sbjct: 594 NMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLC 650
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 115/251 (45%), Gaps = 2/251 (0%)
Query: 86 FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145
+ ++I + + LE A + EMS V++ N L+ + +L + M
Sbjct: 432 YASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMG 491
Query: 146 KY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
K P SYNILI G + + +A EM++ +P L T+ L+ GLC + ++D
Sbjct: 492 KNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKID 551
Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
AL+L ++ ++ D + LI GLC+VG+L A+ V M + Y++L
Sbjct: 552 LALELWHQFLQS-GLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTL 610
Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
+ FK G N I M + G +P+ ++YN ++ G C A D+ + G
Sbjct: 611 MEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGI 670
Query: 325 KANPISYNVIL 335
++N+++
Sbjct: 671 FPTVYTWNILV 681
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 142 bits (358), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 161/321 (50%), Gaps = 41/321 (12%)
Query: 63 FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM-SSFNVQMTVKFF 121
FD ++++L +++ + R++ E F V YG+A L ++A+ +F M F + +VK F
Sbjct: 93 FDSVEKLLSRIRLENRVII-ERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSF 151
Query: 122 NTLLNPKLTCGKLDRMKELFQI-----MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFD 176
N++LN + G R E + M +SP+ S+N++I R ++ A +VF
Sbjct: 152 NSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFR 211
Query: 177 EMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR--------VYNVKPDG----- 223
M +R+ P T+ TL+ GLC E R+DEA+ L +++ +YNV DG
Sbjct: 212 GMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKG 271
Query: 224 ---------------------QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
+ +LI GLC G+L A+ + E MV K + Y
Sbjct: 272 DLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYG 331
Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
+LI+ L K R + +L M+ERG N Y+ LISG KE E A ++ +M +K
Sbjct: 332 TLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEK 391
Query: 323 GCKANPISYNVILGGLCKDGK 343
GCK N + Y+V++ GLC++GK
Sbjct: 392 GCKPNIVVYSVLVDGLCREGK 412
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 150/300 (50%), Gaps = 5/300 (1%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
N L ++L+I L + + D ++ + + + +P +C ++ + ++ A+ +
Sbjct: 186 NGLSFNLVIKALCKLRFVDRAIEVFRGMP-ERKCLPDGYTYCTLMDGLCKEERIDEAVLL 244
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
DEM S + +N L++ G L R+ +L M K P+ +YN LIHG +
Sbjct: 245 LDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCL 304
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM-RVYNVKPDG 223
+L+ A + + MV + P VT+GTLI GL + R +A++L + R Y++ +
Sbjct: 305 KGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHL--NQ 362
Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
+++ LI GL G+ A+ + +M + + +YS L+ L + G+ NE IL
Sbjct: 363 HIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNR 422
Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
M GC PN+ TY++L+ GF K E A + EM GC N Y+V++ GLC G+
Sbjct: 423 MIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGR 482
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 139/297 (46%), Gaps = 6/297 (2%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
N + Y+ +I L D+ +L ++ ++ +P ++ + +I + R A+++
Sbjct: 291 NEVTYNTLIHGLCLKGKLDKAVSLLERMV-SSKCIPNDVTYGTLINGLVKQRRATDAVRL 349
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
M + ++ L++ GK + L++ M EK P+ Y++L+ G
Sbjct: 350 LSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCR 409
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
+ +A ++ + M+ P T+ +L+ G +EA+++ +++ + +
Sbjct: 410 EGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKT-GCSRNKF 468
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
++ LI GLC VG + A+ V +M+ I+ D YSS+I L G + + EM
Sbjct: 469 CYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEM 528
Query: 285 ---KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
+E +P+ VTYN L+ G C ++D A +L+ M D+GC + I+ N L L
Sbjct: 529 LCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTL 585
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 150/289 (51%), Gaps = 9/289 (3%)
Query: 56 KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ 115
+LG+ + ++ +IL + VP I + +I Y +A + AL + D MS V
Sbjct: 149 RLGKTRKAAKILEILE----GSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VS 201
Query: 116 MTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKV 174
V +NT+L GKL + M+ L +++++ PD +Y ILI + A K+
Sbjct: 202 PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKL 261
Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
DEM R P +VT+ L+ G+C E R+DEA+K D M +P+ +++ +C
Sbjct: 262 LDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLND-MPSSGCQPNVITHNIILRSMC 320
Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
+ G A + +M+R ++ LI+ L + G IL++M + GC+PNS+
Sbjct: 321 STGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSL 380
Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
+YN L+ GFCKE+ + A L+ M +GC + ++YN +L LCKDGK
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGK 429
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 147/300 (49%), Gaps = 5/300 (1%)
Query: 46 NLLHYDLIITKL-GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
+++ Y+ I+ L K+ M+ + L+ D P I + +I R + A++
Sbjct: 203 DVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDC--YPDVITYTILIEATCRDSGVGHAMK 260
Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCV 163
+ DEM V +N L+N G+LD +K L + P+ ++NI++
Sbjct: 261 LLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMC 320
Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
+ R DA K+ +M+++ P++VTF LI LC + + A+ + E M + +P+
Sbjct: 321 STGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEK-MPQHGCQPNS 379
Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
+ L+ G C ++ A+ E MV D Y+++++AL K G+ + IL +
Sbjct: 380 LSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ 439
Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
+ +GC P +TYN +I G K A +LDEM K K + I+Y+ ++GGL ++GK
Sbjct: 440 LSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK 499
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 150/300 (50%), Gaps = 7/300 (2%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERAL 103
+++ Y++++ + + DE + L+ + +I N+I R ++ A
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSG--CQPNVITHNIILRSMCSTGRWMD-AE 329
Query: 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGC 162
++ +M +V FN L+N G L R ++ + M ++ P++ SYN L+HG
Sbjct: 330 KLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGF 389
Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222
++++ A + + MV R P +VT+ T++ LC + +V++A+++ + P
Sbjct: 390 CKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ-LSSKGCSPV 448
Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
+ ++I GL G+ A+ + +EM ++ D YSSL+ L + G+ +E
Sbjct: 449 LITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFH 508
Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
E + G +PN+VT+N+++ G CK + A L M ++GCK N SY +++ GL +G
Sbjct: 509 EFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEG 568
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 145/292 (49%), Gaps = 6/292 (2%)
Query: 33 NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
ND + +P N++ +++I+ + + + +++L + P + F +I F
Sbjct: 298 NDMPSSGCQP---NVITHNIILRSMCSTGRWMDAEKLLADMLRKG-FSPSVVTFNILINF 353
Query: 93 YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPD 151
R LL RA+ + ++M Q +N LL+ K+DR E + M + PD
Sbjct: 354 LCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPD 413
Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
+YN ++ ++EDA ++ +++ + P L+T+ T+I GL + +A+KL +
Sbjct: 414 IVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLD 473
Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
+ MR ++KPD ++SL+ GL G++ A+ E R I +A ++S++ L K+
Sbjct: 474 E-MRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKS 532
Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
+ + L M RGCKPN +Y LI G E + A +L+E+ +KG
Sbjct: 533 RQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKG 584
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 105/211 (49%), Gaps = 8/211 (3%)
Query: 137 MKELFQIMEKYV----SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
++E F+ +E V PD LI G + A K+ + + P ++T+
Sbjct: 118 LEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNV 177
Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
+I G C ++ AL ++ +V PD + ++++ LC G+L A+ V + M++
Sbjct: 178 MISGYCKAGEINNALS----VLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQR 233
Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
D Y+ LI A + +L EM++RGC P+ VTYN L++G CKE + A
Sbjct: 234 DCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEA 293
Query: 313 FTILDEMGDKGCKANPISYNVILGGLCKDGK 343
L++M GC+ N I++N+IL +C G+
Sbjct: 294 IKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
+ + G E L+ M G P+ + LI GFC+ A IL+ + G +
Sbjct: 112 MVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPD 171
Query: 328 PISYNVILGGLCKDGK 343
I+YNV++ G CK G+
Sbjct: 172 VITYNVMISGYCKAGE 187
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 160/299 (53%), Gaps = 3/299 (1%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
+L+ Y +++ L + D +L++++ ++ P +I+ +I + + ++ AL +
Sbjct: 220 DLVTYGVVVNGLCKRGDTDLAFNLLNKMEQG-KLEPGVLIYNTIIDGLCKYKHMDDALNL 278
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
F EM + ++ V +++L++ G+ D + L ++E+ ++PD +++ LI V
Sbjct: 279 FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 338
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
+L +A K++DEMVKR + P++VT+ +LI G C+ R+DEA ++ E M + PD
Sbjct: 339 EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE-FMVSKHCFPDVV 397
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
+ +LIKG C + + V EM + + + Y+ LI LF+AG + I KEM
Sbjct: 398 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM 457
Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
G PN +TYN L+ G CK E A + + + + +YN+++ G+CK GK
Sbjct: 458 VSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 516
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 162/323 (50%), Gaps = 13/323 (4%)
Query: 21 ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
AL LFK + E ++P N++ Y +I+ L + + ++L + + +I
Sbjct: 275 ALNLFK-------EMETKGIRP---NVVTYSSLISCLCNYGRWSDASRLLSDMI-ERKIN 323
Query: 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
P F +I + + L A +++DEM ++ ++ +++L+N +LD K++
Sbjct: 324 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 383
Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
F+ M K+ PD +YN LI G +R+E+ +VF EM +R L VT+ LI GL
Sbjct: 384 FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 443
Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
D A ++ ++ M V P+ + +L+ GLC G+L A+ V E + R K+E
Sbjct: 444 AGDCDMAQEIFKE-MVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIY 502
Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
Y+ +I + KAG+ + + + +G KP+ V YN +ISGFC++ E A + EM
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 562
Query: 320 GDKGCKANPISYNVILGGLCKDG 342
+ G N YN ++ +DG
Sbjct: 563 KEDGTLPNSGCYNTLIRARLRDG 585
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 134/261 (51%), Gaps = 2/261 (0%)
Query: 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
P + +++ Y ++ + A+ + D+M Q FNTL++ K L
Sbjct: 149 PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL 208
Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
+++ K PD +Y ++++G + A+ + ++M + +L+P ++ + T+I GLC
Sbjct: 209 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 268
Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
+D+AL L ++ M ++P+ ++SLI LC G S A + +M+ KI D
Sbjct: 269 YKHMDDALNLFKE-METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 327
Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
+S+LI A K G+ E + EM +R P+ VTY++LI+GFC + + A + + M
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 387
Query: 320 GDKGCKANPISYNVILGGLCK 340
K C + ++YN ++ G CK
Sbjct: 388 VSKHCFPDVVTYNTLIKGFCK 408
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 130/266 (48%), Gaps = 4/266 (1%)
Query: 81 PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
P + F +I G + + E A+ + D M + Q + + ++N G D
Sbjct: 184 PNTVTFNTLIHGLFLHNKASE-AMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFN 242
Query: 140 LFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
L ME+ + P YN +I G + ++DA +F EM + ++P +VT+ +LI LC
Sbjct: 243 LLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLC 302
Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
R +A +L D++ + PD F++LI G+L A + +EMV+ I+
Sbjct: 303 NYGRWSDASRLLSDMIE-RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 361
Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
YSSLI+ R +E + + M + C P+ VTYN LI GFCK + E + E
Sbjct: 362 VTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFRE 421
Query: 319 MGDKGCKANPISYNVILGGLCKDGKC 344
M +G N ++YN+++ GL + G C
Sbjct: 422 MSQRGLVGNTVTYNILIQGLFQAGDC 447
Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 1/176 (0%)
Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
+L+DA +F EMVK R P+++ F L+ + + D + L E M+ + + +
Sbjct: 61 KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQ-MQNLGIPHNHYTY 119
Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
+ LI C +L LAL V +M++ E + SSL++ + R +E A++ +M
Sbjct: 120 SILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFV 179
Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
G +PN+VT+N LI G A ++D M KGC+ + ++Y V++ GLCK G
Sbjct: 180 TGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRG 235
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 142/268 (52%), Gaps = 2/268 (0%)
Query: 76 DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
+ ++ P + + +++G Y + +AL+++ EM+ + ++ F TLL+ G +
Sbjct: 465 NKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIR 524
Query: 136 RMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
+LF M ++ V P+ +YN++I G + A++ EM ++ + P ++ LI
Sbjct: 525 DAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLI 584
Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
+GLCL + EA K+ D + N + + + L+ G C G+L AL V +EMV+ +
Sbjct: 585 HGLCLTGQASEA-KVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGV 643
Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
++D Y LI K + F +LKEM +RG KP+ V Y ++I K DF+ AF
Sbjct: 644 DLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFG 703
Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDG 342
I D M ++GC N ++Y ++ GLCK G
Sbjct: 704 IWDLMINEGCVPNEVTYTAVINGLCKAG 731
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 147/334 (44%), Gaps = 38/334 (11%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
N++ Y+++I L + + E I L + P + +C ++ + + E L+M
Sbjct: 261 NIVPYNVLIDGLCKKQKVWEAVGIKKDLA-GKDLKPDVVTYCTLVYGLCKVQEFEIGLEM 319
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
DEM + ++L+ GK++ L + +++ VSP+ YN LI
Sbjct: 320 MDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCK 379
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
R+ +A +FD M K L+P VT+ LI C ++D AL +++ +K
Sbjct: 380 GRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDT-GLKLSVY 438
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL-------------------- 264
+ SLI G C G++S A G EM+ K+E Y+SL
Sbjct: 439 PYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEM 498
Query: 265 ---------------ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
+S LF+AG + + EM E KPN VTYN +I G+C+E D
Sbjct: 499 TGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDM 558
Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
AF L EM +KG + SY ++ GLC G+
Sbjct: 559 SKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQ 592
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 135/299 (45%), Gaps = 38/299 (12%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
NL Y+ +I L + + F E + + ++ + P ++ + +I + R L+ AL
Sbjct: 366 NLFVYNALIDSLCKGRKFHEAELLFDRMGK-IGLRPNDVTYSILIDMFCRRGKLDTALSF 424
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
EM ++++V +N+L+N G + + +++ K + P +Y L+ G
Sbjct: 425 LGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCS 484
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
++ A +++ EM + + P++ TF TL+ GL + +A+KL + M +NVKP+
Sbjct: 485 KGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNE-MAEWNVKPNRV 543
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
+ +I+G C G++S A EF LKEM
Sbjct: 544 TYNVMIEGYCEEGDMSKAF--------------------------------EF---LKEM 568
Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
E+G P++ +Y LI G C A +D + C+ N I Y +L G C++GK
Sbjct: 569 TEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGK 627
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 122/267 (45%), Gaps = 12/267 (4%)
Query: 83 EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF- 141
EI + ++ + R LE AL + EM V + + + L++ L + ++LF
Sbjct: 612 EICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLK----HKDRKLFF 667
Query: 142 ----QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
++ ++ + PD Y +I + ++A+ ++D M+ P VT+ +I GL
Sbjct: 668 GLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGL 727
Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK-EEMVRDKIEM 256
C V+EA L + V +V P+ + + L GE+ + V+ + +
Sbjct: 728 CKAGFVNEAEVLCSKMQPVSSV-PNQVTYGCFLDILTK-GEVDMQKAVELHNAILKGLLA 785
Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
+ Y+ LI + GR E ++ M G P+ +TY +I+ C+ D + A +
Sbjct: 786 NTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELW 845
Query: 317 DEMGDKGCKANPISYNVILGGLCKDGK 343
+ M +KG + + ++YN ++ G C G+
Sbjct: 846 NSMTEKGIRPDRVAYNTLIHGCCVAGE 872
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 2/186 (1%)
Query: 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV-KRRLQPTLVTFGTL 193
D LF EK + S+++LI V SRR+ D VF M+ K L P + T L
Sbjct: 139 DVFNVLFSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSAL 198
Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
++GL A++L D++ V ++PD ++ +I+ LC + +LS A + M
Sbjct: 199 LHGLVKFRHFGLAMELFNDMVSV-GIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATG 257
Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
+++ Y+ LI L K + E I K++ + KP+ VTY L+ G CK ++FE
Sbjct: 258 CDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGL 317
Query: 314 TILDEM 319
++DEM
Sbjct: 318 EMMDEM 323
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 1/138 (0%)
Query: 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
+D L K I +V ++ P+ + ++L+ GL LA+ + +MV I D IY+
Sbjct: 173 LDGVLVFKMMITKV-SLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYT 231
Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
+I +L + + ++ M+ GC N V YN LI G CK++ A I ++ K
Sbjct: 232 GVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGK 291
Query: 323 GCKANPISYNVILGGLCK 340
K + ++Y ++ GLCK
Sbjct: 292 DLKPDVVTYCTLVYGLCK 309
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 103/234 (44%), Gaps = 14/234 (5%)
Query: 75 HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134
HD + P ++I+ ++I + + A ++D M + + ++N G +
Sbjct: 674 HDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFV 733
Query: 135 DRMKELFQIMEKYVS-PDACSY----NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
+ + L M+ S P+ +Y +IL G V ++ A ++ + ++K L T T
Sbjct: 734 NEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEV---DMQKAVELHNAILKGLLANT-AT 789
Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYN--VKPDGQVFASLIKGLCAVGELSLALGVKE 247
+ LI G C + R++EA +L I R+ V PD + ++I LC ++ A+ +
Sbjct: 790 YNMLIRGFCRQGRIEEASEL---ITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWN 846
Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
M I D Y++LI AG + + EM +G PN+ T S
Sbjct: 847 SMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKTSRTTTS 900
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 167/344 (48%), Gaps = 14/344 (4%)
Query: 2 PTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAK 61
P+ I+L R +KD + ++ +F + + H F Y +L +L A
Sbjct: 16 PSQVIKLM---RAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVL-------RLVSAN 65
Query: 62 MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
F + ++ ++K + +V ++I+ G YGR +L++F +M F+ + K +
Sbjct: 66 KFKAAEDLIVRMKIENCVVSEDILLSICRG-YGRVHRPFDSLRVFHKMKDFDCDPSQKAY 124
Query: 122 NTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHG-CVVSRRLEDAWKVFDEMV 179
T+L + +L+ + ++ M E + P S N+LI C ++ K+F EM
Sbjct: 125 VTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMP 184
Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
KR P T+GTLI GLC R+DEA KL +++ + P + SLI GLC +
Sbjct: 185 KRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVE-KDCAPTVVTYTSLINGLCGSKNV 243
Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
A+ EEM IE + YSSL+ L K GR + + + M RGC+PN VTY L
Sbjct: 244 DEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTL 303
Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
I+G CKE+ + A +LD M +G K + Y ++ G C K
Sbjct: 304 ITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISK 347
Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 128/269 (47%), Gaps = 20/269 (7%)
Query: 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKE 139
P + +I R ++ A ++F EM + TV + +L+N +D M+
Sbjct: 190 PDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRY 249
Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
L ++ K + P+ +Y+ L+ G R A ++F+ M+ R +P +VT+ TLI GLC
Sbjct: 250 LEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCK 309
Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
E ++ EA++L D M + +KPD ++ +I G CA+ + A +EM+ G
Sbjct: 310 EQKIQEAVELL-DRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMIL------GG 362
Query: 260 IYSSLISALFKAGRKNE--------FPA----ILKEMKERGCKPNSVTYNALISGFCKEE 307
I + ++ NE +P+ + M+ RG T +L+ CK+
Sbjct: 363 ITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKG 422
Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILG 336
+F+ A ++DE+ GC + ++ +++G
Sbjct: 423 EFQKAVQLVDEIVTDGCIPSKGTWKLLIG 451
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 136/263 (51%), Gaps = 12/263 (4%)
Query: 85 IFCNVI--GFYGRARLLERALQMFDEMSS----FNVQMTVKFFNTLLNPKLTCGKLDRMK 138
+ NVI GF R+ E AL EMS+ F Q T FNTL+N G +
Sbjct: 260 VSVNVIVHGFCKEGRV-EDALNFIQEMSNQDGFFPDQYT---FNTLVNGLCKAGHVKHAI 315
Query: 139 ELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
E+ +M ++ PD +YN +I G +++A +V D+M+ R P VT+ TLI L
Sbjct: 316 EIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTL 375
Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
C E +V+EA +L ++ + PD F SLI+GLC +A+ + EEM E D
Sbjct: 376 CKENQVEEATELAR-VLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPD 434
Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
Y+ LI +L G+ +E +LK+M+ GC + +TYN LI GFCK A I D
Sbjct: 435 EFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFD 494
Query: 318 EMGDKGCKANPISYNVILGGLCK 340
EM G N ++YN ++ GLCK
Sbjct: 495 EMEVHGVSRNSVTYNTLIDGLCK 517
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/374 (26%), Positives = 167/374 (44%), Gaps = 47/374 (12%)
Query: 3 TSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKM 62
++ ++L R Q D AL+LF + PN + L Y+ I+ +LGR+
Sbjct: 48 STDVKLLDSLRSQPDDSAALRLFNLASKKPNFSPEPAL---------YEEILLRLGRSGS 98
Query: 63 FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM-SSFNVQMTVKFF 121
FD+M++IL +K +R F +I Y + L + L + D M F ++ F+
Sbjct: 99 FDDMKKILEDMK-SSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFY 157
Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
N +LN + L ++ M + + PD ++N+LI + +L A + ++M
Sbjct: 158 NRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPS 217
Query: 181 RRLQPTLVTFGT-----------------------------------LIYGLCLELRVDE 205
L P TF T +++G C E RV++
Sbjct: 218 YGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVED 277
Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
AL +++ PD F +L+ GLC G + A+ + + M+++ + D Y+S+I
Sbjct: 278 ALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVI 337
Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
S L K G E +L +M R C PN+VTYN LIS CKE E A + + KG
Sbjct: 338 SGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGIL 397
Query: 326 ANPISYNVILGGLC 339
+ ++N ++ GLC
Sbjct: 398 PDVCTFNSLIQGLC 411
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 134/269 (49%), Gaps = 7/269 (2%)
Query: 79 IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD--- 135
I P F +I RA L A+ M ++M S+ + K F T++ + G LD
Sbjct: 185 IKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGAL 244
Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLI 194
R++E Q++E S S N+++HG R+EDA EM + P TF TL+
Sbjct: 245 RIRE--QMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLV 302
Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
GLC V A+++ D+M PD + S+I GLC +GE+ A+ V ++M+
Sbjct: 303 NGLCKAGHVKHAIEIM-DVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDC 361
Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
+ Y++LIS L K + E + + + +G P+ T+N+LI G C + A
Sbjct: 362 SPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAME 421
Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
+ +EM KGC+ + +YN+++ LC GK
Sbjct: 422 LFEEMRSKGCEPDEFTYNMLIDSLCSKGK 450
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 4/299 (1%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
N + Y+ +I+ L + +E ++ L I+P F ++I R A+++
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKG-ILPDVCTFNSLIQGLCLTRNHRVAMEL 422
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
F+EM S + +N L++ + GKLD + + ME + +YN LI G
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
+ + +A ++FDEM + VT+ TLI GLC RV++A +L D M + KPD
Sbjct: 483 ANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLM-DQMIMEGQKPDKY 541
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
+ SL+ C G++ A + + M + E D Y +LIS L KAGR +L+ +
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI 601
Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG-CKANPISYNVILGGLCKDG 342
+ +G YN +I G ++ A + EM ++ + +SY ++ GLC G
Sbjct: 602 QMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGG 660
Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 148/323 (45%), Gaps = 39/323 (12%)
Query: 56 KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ 115
K G K E+ ++ Q +D P + +VI + ++ A+++ D+M + +
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYD----PDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCS 362
Query: 116 MTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKV 174
+NTL++ +++ EL +++ K + PD C++N LI G ++R A ++
Sbjct: 363 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL 422
Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL--------------------------- 207
F+EM + +P T+ LI LC + ++DEAL
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482
Query: 208 --KLKE-----DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI 260
K +E D M V+ V + + +LI GLC + A + ++M+ + + D
Sbjct: 483 ANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYT 542
Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
Y+SL++ + G + I++ M GC+P+ VTY LISG CK E A +L +
Sbjct: 543 YNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQ 602
Query: 321 DKGCKANPISYNVILGGLCKDGK 343
KG P +YN ++ GL + K
Sbjct: 603 MKGINLTPHAYNPVIQGLFRKRK 625
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 138 bits (347), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 168/323 (52%), Gaps = 13/323 (4%)
Query: 21 ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
AL LFK + E ++P N++ Y +I+ L + + Q+L + + +I
Sbjct: 204 ALNLFK-------EMETKGIRP---NVVTYSSLISCLCSYGRWSDASQLLSDMI-EKKIN 252
Query: 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
P + F +I + + A ++ D+M ++ + +N+L+N +LD+ K++
Sbjct: 253 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 312
Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
F+ M K PD +YN LI G S+R+ED ++F EM R L VT+ TLI GL
Sbjct: 313 FEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 372
Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
+ D A K+ + M V PD ++ L+ GLC G+L AL V + M + +I++D
Sbjct: 373 DGDCDNAQKVFKQ-MVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIY 431
Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
IY+++I + KAG+ ++ + + +G KPN VTYN +ISG C + + A+ +L +M
Sbjct: 432 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 491
Query: 320 GDKGCKANPISYNVILGGLCKDG 342
+ G + +YN ++ +DG
Sbjct: 492 KEDGPLPDSGTYNTLIRAHLRDG 514
Score = 127 bits (320), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 148/299 (49%), Gaps = 3/299 (1%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
NL+ Y +++ L + D +L++++ +I +IF +I + R ++ AL +
Sbjct: 149 NLVTYGVVVNGLCKRGDIDLAFNLLNKMEA-AKIEADVVIFNTIIDSLCKYRHVDDALNL 207
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
F EM + ++ V +++L++ + G+ +L M EK ++P+ ++N LI V
Sbjct: 208 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 267
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
+ +A K+ D+M+KR + P + T+ +LI G C+ R+D+A ++ E M + PD
Sbjct: 268 EGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFE-FMVSKDCFPDLD 326
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
+ +LIKG C + + EM + D Y++LI LF G + + K+M
Sbjct: 327 TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM 386
Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
G P+ +TY+ L+ G C E A + D M K + Y ++ G+CK GK
Sbjct: 387 VSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 445
Score = 111 bits (278), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 137/268 (51%), Gaps = 2/268 (0%)
Query: 77 TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD- 135
+R +P F ++ + + + + + ++M + + +N L+N ++
Sbjct: 4 SRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISL 63
Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
+ L ++M+ P + + L++G +R+ DA + D+MV+ +P +TF TLI+
Sbjct: 64 ALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 123
Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
GL L + EA+ L D M +P+ + ++ GLC G++ LA + +M KIE
Sbjct: 124 GLFLHNKASEAVALV-DRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIE 182
Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
D I++++I +L K ++ + KEM+ +G +PN VTY++LIS C + A +
Sbjct: 183 ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQL 242
Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
L +M +K N +++N ++ K+GK
Sbjct: 243 LSDMIEKKINPNLVTFNALIDAFVKEGK 270
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 133/287 (46%), Gaps = 35/287 (12%)
Query: 89 VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKY 147
+I + R + AL + +M + ++ ++LLN ++ D + + Q++E
Sbjct: 51 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 110
Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD--- 204
PD ++ LIHG + + +A + D MV+R QP LVT+G ++ GLC +D
Sbjct: 111 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAF 170
Query: 205 ------EALKLKEDI-------------------------MRVYNVKPDGQVFASLIKGL 233
EA K++ D+ M ++P+ ++SLI L
Sbjct: 171 NLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 230
Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
C+ G S A + +M+ KI + +++LI A K G+ E + +M +R P+
Sbjct: 231 CSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDI 290
Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
TYN+LI+GFC + + A + + M K C + +YN ++ G CK
Sbjct: 291 FTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCK 337
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 124/266 (46%), Gaps = 4/266 (1%)
Query: 81 PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
P I F +I G + + E A+ + D M Q + + ++N G +D
Sbjct: 113 PDTITFTTLIHGLFLHNKASE-AVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFN 171
Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
L ME + D +N +I R ++DA +F EM + ++P +VT+ +LI LC
Sbjct: 172 LLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLC 231
Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
R +A +L D++ + P+ F +LI G+ A + ++M++ I+ D
Sbjct: 232 SYGRWSDASQLLSDMIE-KKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDI 290
Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
Y+SLI+ R ++ + + M + C P+ TYN LI GFCK + E + E
Sbjct: 291 FTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFRE 350
Query: 319 MGDKGCKANPISYNVILGGLCKDGKC 344
M +G + ++Y ++ GL DG C
Sbjct: 351 MSHRGLVGDTVTYTTLIQGLFHDGDC 376
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 107/211 (50%), Gaps = 4/211 (1%)
Query: 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
P + +I + +++ +E ++F EMS + + TL+ G D +++
Sbjct: 323 PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 382
Query: 141 F-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
F Q++ V PD +Y+IL+ G + +LE A +VFD M K ++ + + T+I G+C
Sbjct: 383 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 442
Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
+VD+ L + + VKP+ + ++I GLC+ L A + ++M D D+G
Sbjct: 443 AGKVDDGWDLFCS-LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSG 501
Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCK 290
Y++LI A + G K +++EM R C+
Sbjct: 502 TYNTLIRAHLRDGDKAASAELIREM--RSCR 530
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 143/281 (50%), Gaps = 37/281 (13%)
Query: 99 LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
+ A ++FDE++ ++Q TV FNTL+N G LD L MEK PD +Y+
Sbjct: 256 ISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSA 315
Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD---EALK------ 208
LI+ +++ A +FDEM KR L P V F TLI+G +D E+ +
Sbjct: 316 LINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKG 375
Query: 209 LKEDIMRVYN--------------------------VKPDGQVFASLIKGLCAVGELSLA 242
L+ DI+ +YN ++PD + +LI G C G++ A
Sbjct: 376 LQPDIV-LYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETA 434
Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
L +++EM ++ IE+D +S+L+ + K GR + L+EM G KP+ VTY ++
Sbjct: 435 LEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDA 494
Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
FCK+ D + F +L EM G + ++YNV+L GLCK G+
Sbjct: 495 FCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQ 535
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 150/293 (51%), Gaps = 3/293 (1%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
++ ++ +I + DE ++ HQ++ +R P + +I + ++ A +
Sbjct: 274 TVVSFNTLINGYCKVGNLDEGFRLKHQMEK-SRTRPDVFTYSALINALCKENKMDGAHGL 332
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
FDEM + F TL++ G++D MKE +Q ++ K + PD YN L++G
Sbjct: 333 FDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCK 392
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
+ L A + D M++R L+P +T+ TLI G C V+ AL+++++ M ++ D
Sbjct: 393 NGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKE-MDQNGIELDRV 451
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
F++L+ G+C G + A EM+R I+ D Y+ ++ A K G +LKEM
Sbjct: 452 GFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEM 511
Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
+ G P+ VTYN L++G CK + A +LD M + G + I+YN +L G
Sbjct: 512 QSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEG 564
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 52/100 (52%)
Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
G E++ ++ +++ L++ K G ++ + E+ +R +P V++N LI+G+
Sbjct: 226 GFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGY 285
Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
CK + + F + +M + + +Y+ ++ LCK+ K
Sbjct: 286 CKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENK 325
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 146/297 (49%), Gaps = 6/297 (2%)
Query: 50 YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA-RLLERALQMFDE 108
+DL++ R + D+ I+H L +P + + V+ R+ R + A +F E
Sbjct: 137 FDLVVKSYSRLSLIDKALSIVH-LAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKE 195
Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRR 167
M V V +N L+ G +D LF ME K P+ +YN LI G R+
Sbjct: 196 MLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRK 255
Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE-ALKLKEDIMRVYNVKPDGQVF 226
++D +K+ M + L+P L+++ +I GLC E R+ E + L E R Y++ D +
Sbjct: 256 IDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSL--DEVTY 313
Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
+LIKG C G AL + EM+R + Y+SLI ++ KAG N L +M+
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV 373
Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
RG PN TY L+ GF ++ A+ +L EM D G + ++YN ++ G C GK
Sbjct: 374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGK 430
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 154/306 (50%), Gaps = 3/306 (0%)
Query: 39 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
LK NL+ Y+++I L R E+ +L ++ + E+ + +I Y +
Sbjct: 267 ALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSL-DEVTYNTLIKGYCKEGN 325
Query: 99 LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
+AL M EM + +V + +L++ G ++R E Q+ + + P+ +Y
Sbjct: 326 FHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTT 385
Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
L+ G + +A++V EM P++VT+ LI G C+ ++++A+ + ED M+
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLED-MKEK 444
Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
+ PD +++++ G C ++ AL VK EMV I+ D YSSLI + R E
Sbjct: 445 GLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEA 504
Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
+ +EM G P+ TY ALI+ +C E D E A + +EM +KG + ++Y+V++ G
Sbjct: 505 CDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLING 564
Query: 338 LCKDGK 343
L K +
Sbjct: 565 LNKQSR 570
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 155/357 (43%), Gaps = 56/357 (15%)
Query: 38 HPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
H L P +++ Y +I + +A + + L Q++ + P E + ++ + +
Sbjct: 339 HGLTP---SVITYTSLIHSMCKAGNMNRAMEFLDQMR-VRGLCPNERTYTTLVDGFSQKG 394
Query: 98 LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYN 156
+ A ++ EM+ +V +N L+N GK+ D + L + EK +SPD SY+
Sbjct: 395 YMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYS 454
Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
++ G S +++A +V EMV++ ++P +T+ +LI G C + R EA L E+++RV
Sbjct: 455 TVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRV 514
Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
+ PD + +LI C G+L AL + EMV + D YS LI+ L K R E
Sbjct: 515 -GLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTRE 573
Query: 277 -------------FPA-------------------------------------ILKEMKE 286
P+ + + M
Sbjct: 574 AKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLG 633
Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
+ KP+ YN +I G C+ D A+T+ EM G + ++ ++ L K+GK
Sbjct: 634 KNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGK 690
Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 139/264 (52%), Gaps = 4/264 (1%)
Query: 73 LKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132
L+H + P I + ++I +A + RA++ D+M + + + TL++ G
Sbjct: 337 LRHG--LTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKG 394
Query: 133 KLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
++ + + M + SP +YN LI+G V+ ++EDA V ++M ++ L P +V++
Sbjct: 395 YMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYS 454
Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
T++ G C VDEAL++K +++ +KPD ++SLI+G C A + EEM+R
Sbjct: 455 TVLSGFCRSYDVDEALRVKREMVE-KGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLR 513
Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
+ D Y++LI+A G + + EM E+G P+ VTY+ LI+G K+
Sbjct: 514 VGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTRE 573
Query: 312 AFTILDEMGDKGCKANPISYNVIL 335
A +L ++ + + ++Y+ ++
Sbjct: 574 AKRLLLKLFYEESVPSDVTYHTLI 597
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 139/302 (46%), Gaps = 20/302 (6%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
+++ Y +++ R+ DE ++ ++ + I P I + ++I + R + A +
Sbjct: 449 DVVSYSTVLSGFCRSYDVDEALRVKREMV-EKGIKPDTITYSSLIQGFCEQRRTKEACDL 507
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
++EM + + L+N G L++ +L +++EK V PD +Y++LI+G
Sbjct: 508 YEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNK 567
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY---------------GLCLELRVDEALKL 209
R +A ++ ++ P+ VT+ TLI G C++ + EA ++
Sbjct: 568 QSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQV 627
Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
E ++ N KPDG + +I G C G++ A + +EMV+ + +L+ AL
Sbjct: 628 FESMLG-KNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALH 686
Query: 270 KAGRKNEFPAILKEMKERGCK-PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
K G+ NE +++ + R C+ + L+ +E + + +L EM G N
Sbjct: 687 KEGKVNELNSVIVHVL-RSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPNG 745
Query: 329 IS 330
IS
Sbjct: 746 IS 747
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 143/283 (50%), Gaps = 10/283 (3%)
Query: 62 MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
MFD+M + ++ P +I+ +I +++ ++ AL + + M + V +
Sbjct: 173 MFDQMVGMGYK--------PNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTY 224
Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
N+L++ + G+ + M K + PD ++N LI CV R+ +A + ++EM++
Sbjct: 225 NSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIR 284
Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
R L P +VT+ LIYGLC+ R+DEA ++ M PD ++ LI G C ++
Sbjct: 285 RSLDPDIVTYSLLIYGLCMYSRLDEAEEMF-GFMVSKGCFPDVVTYSILINGYCKSKKVE 343
Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
+ + EM + + + Y+ LI +AG+ N I + M G PN +TYN L+
Sbjct: 344 HGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLL 403
Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
G C E A IL +M G A+ ++YN+I+ G+CK G+
Sbjct: 404 HGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGE 446
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 145/299 (48%), Gaps = 11/299 (3%)
Query: 50 YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQMFDE 108
+ +++ + + K +D + + Q++ +P + CN++ + R L AL +
Sbjct: 84 FSRLLSAISKMKKYDVVIYLWEQMQMLG--IPHNLCTCNILLNCFCRCSQLSLALSFLGK 141
Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHGCVV 164
M + ++ F +LLN + DR+ + + ++ V P+ YN +I G
Sbjct: 142 MIKLGHEPSIVTFGSLLNGFC---RGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCK 198
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
S+++++A + + M K + P +VT+ +LI GLC R +A ++ M + PD
Sbjct: 199 SKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVS-CMTKREIYPDVF 257
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
F +LI G +S A EEM+R ++ D YS LI L R +E + M
Sbjct: 258 TFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFM 317
Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
+GC P+ VTY+ LI+G+CK + E + EM +G N ++Y +++ G C+ GK
Sbjct: 318 VSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGK 376
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 152/301 (50%), Gaps = 3/301 (0%)
Query: 43 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
++ N++ Y+ II L ++K D +L++++ D I P + + ++I + A
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDG-IGPDVVTYNSLISGLCSSGRWSDA 240
Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHG 161
+M M+ + V FN L++ + G++ +E ++ ++ + + PD +Y++LI+G
Sbjct: 241 TRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYG 300
Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
+ RL++A ++F MV + P +VT+ LI G C +V+ +KL + M V
Sbjct: 301 LCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCE-MSQRGVVR 359
Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
+ + LI+G C G+L++A + MV + + Y+ L+ L G+ + IL
Sbjct: 360 NTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVIL 419
Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
+M++ G + VTYN +I G CK + A+ I + +G + +Y ++ GL K
Sbjct: 420 ADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKK 479
Query: 342 G 342
G
Sbjct: 480 G 480
>sp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475
OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1
Length = 506
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 174/337 (51%), Gaps = 14/337 (4%)
Query: 11 LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 70
L + ++DP+ L +F +A K F +N Y +++ L R K F + IL
Sbjct: 62 LMKRERDPQGVLDIF---------NKASQQKGFNHNNATYSVLLDNLVRHKKFLAVDAIL 112
Query: 71 HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF-NVQMTVKFFNTLLNPKL 129
HQ+K++T +E +F N++ + R+ L ++ ++MF+ + V+ ++ +T LN +
Sbjct: 113 HQMKYET-CRFQESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKPSLNAISTCLNLLI 171
Query: 130 TCGKLDRMKELFQIMEKYVS--PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ-PT 186
G+++ ++L + + P+ C +NIL+ + + A+ V +EM + + P
Sbjct: 172 DSGEVNLSRKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISYPN 231
Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
+T+ TL+ L R EA++L ED++ + PD F +I G C GE+ A +
Sbjct: 232 SITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKIL 291
Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
+ M ++ + YS+L++ K G+ E E+K+ G K ++V Y L++ FC+
Sbjct: 292 DFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRN 351
Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
+ + A +L EM C+A+ ++YNVIL GL +G+
Sbjct: 352 GETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGR 388
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 134/278 (48%), Gaps = 5/278 (1%)
Query: 69 ILHQLKHDTRIVPKEIIFCNVIG-FYGRARLLERALQMFDEM-SSFNVQMTVKFFNTLLN 126
++ ++K P I + ++ + +R E A+++F++M S + FN ++N
Sbjct: 218 VVEEMKRSGISYPNSITYSTLMDCLFAHSRSKE-AVELFEDMISKEGISPDPVTFNVMIN 276
Query: 127 PKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
G+++R K++ M+K +P+ +Y+ L++G ++++A + FDE+ K L+
Sbjct: 277 GFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKL 336
Query: 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
V + TL+ C DEA+KL + M+ + D + +++GL + G AL +
Sbjct: 337 DTVGYTTLMNCFCRNGETDEAMKLLGE-MKASRCRADTLTYNVILRGLSSEGRSEEALQM 395
Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
++ + + ++ G Y +++AL G + L M ERG P+ T+N L+ C+
Sbjct: 396 LDQWGSEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELVVRLCE 455
Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
E +L G P S+ ++ +CK+ K
Sbjct: 456 SGYTEIGVRVLIGFLRIGLIPGPKSWGAVVESICKERK 493
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 131 bits (330), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 146/295 (49%), Gaps = 6/295 (2%)
Query: 50 YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
+DL++ + +M DE + + +K + PK +++ R +E A + +M
Sbjct: 158 FDLLVRCCCQLRMVDEAIECFYLMK-EKGFYPKTETCNHILTLLSRLNRIENAWVFYADM 216
Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
++ V FN ++N GKL + K IME + + P +YN L+ G + R+
Sbjct: 217 YRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRI 276
Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
E A + EM + QP + T+ ++ +C E R E L+ ++I V PD +
Sbjct: 277 EGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEVLREMKEIGLV----PDSVSYNI 332
Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
LI+G G+L +A ++EMV+ + Y++LI LF + +++E++E+G
Sbjct: 333 LIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKG 392
Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
+SVTYN LI+G+C+ D + AF + DEM G + +Y ++ LC+ K
Sbjct: 393 IVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNK 447
Score = 131 bits (330), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 160/305 (52%), Gaps = 12/305 (3%)
Query: 41 KPFRYNLLHYDLIITKL---GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR 97
K F+ ++ Y+ I++ + GRA ++L ++K + +VP + + +I
Sbjct: 289 KGFQPDMQTYNPILSWMCNEGRA------SEVLREMK-EIGLVPDSVSYNILIRGCSNNG 341
Query: 98 LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYN 156
LE A DEM + T +NTL++ K++ + L +I EK + D+ +YN
Sbjct: 342 DLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYN 401
Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
ILI+G + A+ + DEM+ +QPT T+ +LIY LC + + EA +L E ++
Sbjct: 402 ILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVG- 460
Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
+KPD + +L+ G CA+G + A + +EM I D Y+ L+ L G+ E
Sbjct: 461 KGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEE 520
Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
++ EMK RG KP+ ++YN LISG+ K+ D + AF + DEM G ++YN +L
Sbjct: 521 ARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLK 580
Query: 337 GLCKD 341
GL K+
Sbjct: 581 GLSKN 585
Score = 128 bits (321), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 135/255 (52%), Gaps = 4/255 (1%)
Query: 89 VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV 148
V GF R R+ E A + EM S Q ++ +N +L+ G+ + L ++ E +
Sbjct: 267 VQGFSLRGRI-EGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEV--LREMKEIGL 323
Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
PD+ SYNILI GC + LE A+ DEMVK+ + PT T+ TLI+GL +E +++ A
Sbjct: 324 VPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEI 383
Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
L +I R + D + LI G C G+ A + +EM+ D I+ Y+SLI L
Sbjct: 384 LIREI-REKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVL 442
Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
+ + E + +++ +G KP+ V N L+ G C + + AF++L EM +
Sbjct: 443 CRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDD 502
Query: 329 ISYNVILGGLCKDGK 343
++YN ++ GLC +GK
Sbjct: 503 VTYNCLMRGLCGEGK 517
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 110/240 (45%), Gaps = 2/240 (0%)
Query: 65 EMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124
E +IL + + IV + + +I Y + ++A + DEM + +Q T + +L
Sbjct: 379 EAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSL 438
Query: 125 LNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
+ K ELF+ ++ K + PD N L+ G ++ A+ + EM +
Sbjct: 439 IYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSI 498
Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
P VT+ L+ GLC E + +EA +L ++ R +KPD + +LI G G+ A
Sbjct: 499 NPDDVTYNCLMRGLCGEGKFEEARELMGEMKR-RGIKPDHISYNTLISGYSKKGDTKHAF 557
Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
V++EM+ Y++L+ L K +L+EMK G PN ++ ++I
Sbjct: 558 MVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAM 617
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 131 bits (329), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 148/306 (48%), Gaps = 4/306 (1%)
Query: 39 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL 98
PLK R N + Y +I L A+ DE + ++K D P + +I +
Sbjct: 280 PLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDD-ECFPTVRTYTVLIKSLCGSER 338
Query: 99 LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNI 157
AL + EM ++ + + L++ + K ++ +EL Q++EK + P+ +YN
Sbjct: 339 KSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNA 398
Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
LI+G +EDA V + M R+L P T+ LI G C + V +A+ + ++
Sbjct: 399 LINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYC-KSNVHKAMGVLNKMLE-R 456
Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
V PD + SLI G C G A + M + D Y+S+I +L K+ R E
Sbjct: 457 KVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEA 516
Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
+ ++++G PN V Y ALI G+CK + A +L++M K C N +++N ++ G
Sbjct: 517 CDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHG 576
Query: 338 LCKDGK 343
LC DGK
Sbjct: 577 LCADGK 582
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 124/237 (52%), Gaps = 2/237 (0%)
Query: 107 DEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVS 165
DE ++ + +NTLLN G +D MK+++ +++E V P+ +YN +++G
Sbjct: 172 DERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKL 231
Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
+E+A + ++V+ L P T+ +LI G C +D A K+ + M + + +
Sbjct: 232 GNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNE-MPLKGCRRNEVA 290
Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
+ LI GLC + A+ + +M D+ Y+ LI +L + RK+E ++KEM+
Sbjct: 291 YTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEME 350
Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
E G KPN TY LI C + FE A +L +M +KG N I+YN ++ G CK G
Sbjct: 351 ETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 147/293 (50%), Gaps = 4/293 (1%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
N++ Y+ +I + M ++ ++ +L ++ P + +I Y ++ + +A+ +
Sbjct: 392 NVITYNALINGYCKRGMIEDAVDVV-ELMESRKLSPNTRTYNELIKGYCKSNV-HKAMGV 449
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
++M V V +N+L++ + G D L +M ++ + PD +Y +I
Sbjct: 450 LNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCK 509
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
S+R+E+A +FD + ++ + P +V + LI G C +VDEA + E ++ N P+
Sbjct: 510 SKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLS-KNCLPNSL 568
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
F +LI GLCA G+L A ++E+MV+ ++ + LI L K G + + ++M
Sbjct: 569 TFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQM 628
Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
G KP++ TY I +C+E A ++ +M + G + +Y+ ++ G
Sbjct: 629 LSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKG 681
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 149/316 (47%), Gaps = 21/316 (6%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
+++ Y+ +I R+ FD ++L L +D +VP + + ++I +++ +E A +
Sbjct: 461 DVVTYNSLIDGQCRSGNFDSAYRLL-SLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDL 519
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
FD + V V + L++ GK+D + + ++ K P++ ++N LIHG
Sbjct: 520 FDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCA 579
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
+L++A + ++MVK LQPT+ T LI+ L + D A + ++ KPD
Sbjct: 580 DGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSS-GTKPDAH 638
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
+ + I+ C G L A + +M + + D YSSLI G+ N +LK M
Sbjct: 639 TYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRM 698
Query: 285 KERGCKPNSVTYNALISGFCKEE------------------DFEAAFTILDEMGDKGCKA 326
++ GC+P+ T+ +LI + + +F+ +L++M +
Sbjct: 699 RDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTP 758
Query: 327 NPISYNVILGGLCKDG 342
N SY ++ G+C+ G
Sbjct: 759 NAKSYEKLILGICEVG 774
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 149/310 (48%), Gaps = 5/310 (1%)
Query: 34 DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
+ E +KP N+ Y ++I L F++ +++L Q+ + ++P I + +I Y
Sbjct: 348 EMEETGIKP---NIHTYTVLIDSLCSQCKFEKARELLGQML-EKGLMPNVITYNALINGY 403
Query: 94 GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC 153
+ ++E A+ + + M S + + +N L+ M L +++E+ V PD
Sbjct: 404 CKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVV 463
Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
+YN LI G S + A+++ M R L P T+ ++I LC RV+EA L D
Sbjct: 464 TYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLF-DS 522
Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
+ V P+ ++ +LI G C G++ A + E+M+ ++ +++LI L G+
Sbjct: 523 LEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGK 582
Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
E + ++M + G +P T LI K+ DF+ A++ +M G K + +Y
Sbjct: 583 LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTT 642
Query: 334 ILGGLCKDGK 343
+ C++G+
Sbjct: 643 FIQTYCREGR 652
Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/364 (21%), Positives = 151/364 (41%), Gaps = 72/364 (19%)
Query: 50 YDLIITKLGRAKMFDEMQQILHQLKHD-----------------------------TRIV 80
Y+ ++ L R + DEM+Q+ ++ D ++IV
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 81 -----PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
P + ++I Y + + L+ A ++F+EM + + L++ ++D
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305
Query: 136 RMKELF------------------------------------QIMEKYVSPDACSYNILI 159
+LF ++ E + P+ +Y +LI
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLI 365
Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
+ E A ++ +M+++ L P ++T+ LI G C +++A+ + E +M +
Sbjct: 366 DSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVE-LMESRKL 424
Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
P+ + + LIKG C + A+GV +M+ K+ D Y+SLI ++G +
Sbjct: 425 SPNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYR 483
Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
+L M +RG P+ TY ++I CK + E A + D + KG N + Y ++ G C
Sbjct: 484 LLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYC 543
Query: 340 KDGK 343
K GK
Sbjct: 544 KAGK 547
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 10/147 (6%)
Query: 194 IYGLCLELRVDEALKLKED-IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252
+ LC ++ DE +LK I+ YN +L+ L G + V EM+ D
Sbjct: 162 VLDLCRKMNKDERFELKYKLIIGCYN---------TLLNSLARFGLVDEMKQVYMEMLED 212
Query: 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312
K+ + Y+ +++ K G E + ++ E G P+ TY +LI G+C+ +D ++A
Sbjct: 213 KVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSA 272
Query: 313 FTILDEMGDKGCKANPISYNVILGGLC 339
F + +EM KGC+ N ++Y ++ GLC
Sbjct: 273 FKVFNEMPLKGCRRNEVAYTHLIHGLC 299
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 120/294 (40%), Gaps = 56/294 (19%)
Query: 99 LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNI 157
+ A F +M S + + T + G+L D + ++ E VSPD +Y+
Sbjct: 618 FDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSS 677
Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI-------YG--------LCLE-- 200
LI G + A+ V M +P+ TF +LI YG LC
Sbjct: 678 LIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSN 737
Query: 201 -LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK-IEMDA 258
+ D ++L E ++ ++V P+ + + LI G+C VG L +A V + M R++ I
Sbjct: 738 MMEFDTVVELLEKMVE-HSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSE 796
Query: 259 GIYSSLIS-----------------------------------ALFKAGRKNEFPAILKE 283
++++L+S L+K G K ++ +
Sbjct: 797 LVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQN 856
Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
+ + G + + + +I G K+ EA + + + M GCK + +Y++++ G
Sbjct: 857 LLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 134/272 (49%), Gaps = 18/272 (6%)
Query: 89 VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKY 147
++ + +A L+E+A + F+EM V + L++ L K+ ELF+ M +
Sbjct: 524 MVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG 583
Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR----------------LQPTLVTFG 191
P+ +Y+ LI G + ++E A ++F+ M + +P +VT+G
Sbjct: 584 CLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYG 643
Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
L+ G C RV+EA KL D M + +P+ V+ +LI GLC VG+L A VK EM
Sbjct: 644 ALLDGFCKSHRVEEARKLL-DAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSE 702
Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
YSSLI FK R++ +L +M E C PN V Y +I G CK +
Sbjct: 703 HGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDE 762
Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
A+ ++ M +KGC+ N ++Y ++ G GK
Sbjct: 763 AYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGK 794
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 141/309 (45%), Gaps = 11/309 (3%)
Query: 43 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
F + + Y +I+ L A +F+E L++++ T +P + + ++ + L R
Sbjct: 298 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRA-TSCLPNVVTYSTLLCGCLNKKQLGRC 356
Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHG 161
++ + M + K FN+L++ T G +L + M K P YNILI G
Sbjct: 357 KRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILI-G 415
Query: 162 CVVSRR-------LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
+ + L+ A K + EM+ + + + LC + ++A + +++
Sbjct: 416 SICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMI 475
Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
PD ++ ++ LC ++ LA + EEM R + D Y+ ++ + KAG
Sbjct: 476 G-QGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLI 534
Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
+ EM+E GC PN VTY ALI + K + A + + M +GC N ++Y+ +
Sbjct: 535 EQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSAL 594
Query: 335 LGGLCKDGK 343
+ G CK G+
Sbjct: 595 IDGHCKAGQ 603
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 91/224 (40%), Gaps = 5/224 (2%)
Query: 119 KFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
+F N L+ G ++EL ++ + P +YN LI + + RL+ A + E
Sbjct: 201 EFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHRE 260
Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
M L+ T Y LC + EAL L E N PD + LI GLC
Sbjct: 261 MSLANLRMDGFTLRCFAYSLCKVGKWREALTLVE----TENFVPDTVFYTKLISGLCEAS 316
Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
A+ M + YS+L+ + +L M GC P+ +N
Sbjct: 317 LFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFN 376
Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
+L+ +C D A+ +L +M G + YN+++G +C D
Sbjct: 377 SLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGD 420
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 4/161 (2%)
Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
R +P+ T+ LI R+D A + + M + N++ DG LC VG+
Sbjct: 230 RFRPSRSTYNCLIQAFLKADRLDSASLIHRE-MSLANLRMDGFTLRCFAYSLCKVGKWRE 288
Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
AL + E + D Y+ LIS L +A E L M+ C PN VTY+ L+
Sbjct: 289 ALTLVET---ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLC 345
Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
G ++ +L+ M +GC +P +N ++ C G
Sbjct: 346 GCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSG 386
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 105/246 (42%), Gaps = 5/246 (2%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
N++ Y +I L + DE +++ Q+ + P + + +I +G +E L++
Sbjct: 743 NVVIYTEMIDGLCKVGKTDEAYKLM-QMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 801
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-DACSYNILIHGCVV 164
+ M S V + L++ G LD L + M++ P Y +I G
Sbjct: 802 LERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEG--F 859
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD-G 223
++ ++ + DE+ + P L + LI L R++ AL+L E++ D
Sbjct: 860 NKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYS 919
Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
+ SLI+ LC ++ A + EM + + + + SLI LF+ + +E +L
Sbjct: 920 STYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDF 979
Query: 284 MKERGC 289
+ C
Sbjct: 980 ISHMVC 985
>sp|Q8LDU5|PP298_ARATH Pentatricopeptide repeat-containing protein At4g01400,
mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2
SV=2
Length = 466
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 167/342 (48%), Gaps = 13/342 (3%)
Query: 4 SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMF 63
S R+ L Q DP LA ++F + PN FR++ + ++I KLGR + F
Sbjct: 50 SPTRVQKLIASQSDPLLAKEIFDYASQQPN---------FRHSRSSHLILILKLGRGRYF 100
Query: 64 DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT 123
+ + +L + + + EI F +I Y A+L E+ L F +M FN K N
Sbjct: 101 NLIDDVLAKHRSSGYPLTGEI-FTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNR 159
Query: 124 LLNPKLTC-GKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
+L+ ++ G L + ELF+ + V P+ SYN+L+ ++ L A+++F +M++R
Sbjct: 160 ILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLER 219
Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
+ P + ++ LI G C + +V+ A++L +D++ V PD + +L+ LC +L
Sbjct: 220 DVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFV-PDRLSYTTLLNSLCRKTQLRE 278
Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
A + M D Y+++I + R + +L +M GC PNSV+Y LI
Sbjct: 279 AYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIG 338
Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
G C + F+ L+EM KG + N ++ G C GK
Sbjct: 339 GLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGK 380
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 2/213 (0%)
Query: 99 LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNI 157
L A Q+F +M +V V + L+ G+++ EL ++ K PD SY
Sbjct: 206 LSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTT 265
Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
L++ +L +A+K+ M + P LV + T+I G C E R +A K+ +D++
Sbjct: 266 LLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLS-N 324
Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
P+ + +LI GLC G EEM+ + + L+ G+ E
Sbjct: 325 GCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEA 384
Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
+++ + + G +S T+ +I C E++ E
Sbjct: 385 CDVVEVVMKNGETLHSDTWEMVIPLICNEDESE 417
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 155/299 (51%), Gaps = 3/299 (1%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
+L+ Y +I L + D +L++++ +I +I+ VI + R ++ AL +
Sbjct: 204 DLVTYGAVINGLCKRGEPDLALNLLNKMEKG-KIEADVVIYSTVIDSLCKYRHVDDALNL 262
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
F EM + ++ V +++L++ G+ D + L ++E+ ++P+ ++N LI
Sbjct: 263 FTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAK 322
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
+L +A K+FDEM++R + P +VT+ +LI G C+ R+DEA ++ +M + PD
Sbjct: 323 EGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFT-LMVSKDCLPDVV 381
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
+ +LI G C ++ + + +M R + + Y++LI F+A + + K+M
Sbjct: 382 TYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQM 441
Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
G PN +TYN L+ G CK E A + + + + + +YN++ G+CK GK
Sbjct: 442 VSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGK 500
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 156/303 (51%), Gaps = 3/303 (0%)
Query: 41 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
K R ++ Y +I+ L + + ++L + + +I P + F ++I + + L
Sbjct: 269 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDML-ERKINPNVVTFNSLIDAFAKEGKLI 327
Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
A ++FDEM ++ + +N+L+N +LD +++F +M K PD +YN LI
Sbjct: 328 EAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLI 387
Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
+G ++++ D ++F +M +R L VT+ TLI+G D A + + M V
Sbjct: 388 NGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQ-MVSDGV 446
Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
P+ + +L+ GLC G+L A+ V E + + K+E D Y+ + + KAG+ +
Sbjct: 447 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWD 506
Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
+ + +G KP+ + YN +ISGFCK+ E A+T+ +M + G + +YN ++
Sbjct: 507 LFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHL 566
Query: 340 KDG 342
+DG
Sbjct: 567 RDG 569
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 139/300 (46%), Gaps = 3/300 (1%)
Query: 45 YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQ 104
+NL Y+++I L R IL ++ P + +++ + + A+
Sbjct: 98 HNLYTYNIMINCLCRRSQLSFALAILGKMMK-LGYGPSIVTLNSLLNGFCHGNRISEAVA 156
Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
+ D+M Q F TL++ K L + M K PD +Y +I+G
Sbjct: 157 LVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLC 216
Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
+ A + ++M K +++ +V + T+I LC VD+AL L + M ++PD
Sbjct: 217 KRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTE-MDNKGIRPDV 275
Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
++SLI LC G S A + +M+ KI + ++SLI A K G+ E + E
Sbjct: 276 FTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDE 335
Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
M +R PN VTYN+LI+GFC + + A I M K C + ++YN ++ G CK K
Sbjct: 336 MIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKK 395
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 128/284 (45%), Gaps = 10/284 (3%)
Query: 62 MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
+ D+M ++ +Q P + F ++ + A+ + + M Q + +
Sbjct: 157 LVDQMVEMGYQ--------PDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTY 208
Query: 122 NTLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180
++N G+ D L MEK + D Y+ +I R ++DA +F EM
Sbjct: 209 GAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDN 268
Query: 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240
+ ++P + T+ +LI LC R +A +L D++ + P+ F SLI G+L
Sbjct: 269 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLE-RKINPNVVTFNSLIDAFAKEGKLI 327
Query: 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300
A + +EM++ I+ + Y+SLI+ R +E I M + C P+ VTYN LI
Sbjct: 328 EAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLI 387
Query: 301 SGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
+GFCK + + +M +G N ++Y ++ G + C
Sbjct: 388 NGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDC 431
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 128/280 (45%), Gaps = 35/280 (12%)
Query: 99 LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
L+ A+ +F EM ++ F+ LL+ K D + + ME VS + +YNI
Sbjct: 46 LDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNI 105
Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI---- 213
+I+ +L A + +M+K P++VT +L+ G C R+ EA+ L + +
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165
Query: 214 ------------------------------MRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
M V +PD + ++I GLC GE LAL
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 225
Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
+ +M + KIE D IYS++I +L K ++ + EM +G +P+ TY++LIS
Sbjct: 226 NLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCL 285
Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
C + A +L +M ++ N +++N ++ K+GK
Sbjct: 286 CNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGK 325
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 41/190 (21%)
Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213
S N L+H +L++A +F EMVK R P++V F L+ + + D + E
Sbjct: 37 SRNALLH-----LKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEK- 90
Query: 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273
M + V + + +I LC +LS AL
Sbjct: 91 MEILGVSHNLYTYNIMINCLCRRSQLSFAL------------------------------ 120
Query: 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNV 333
AIL +M + G P+ VT N+L++GFC A ++D+M + G + + +++
Sbjct: 121 -----AILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTT 175
Query: 334 ILGGLCKDGK 343
++ GL + K
Sbjct: 176 LVHGLFQHNK 185
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 162/323 (50%), Gaps = 3/323 (0%)
Query: 21 ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
AL +KN N N K R N++ Y+ +I L + + ++L + + +I
Sbjct: 264 ALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI-ERKIN 322
Query: 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
P + F +I + + L A +++DEM ++ + +++L+N +LD K +
Sbjct: 323 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382
Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
F++M K P+ +YN LI G ++R+E+ ++F EM +R L VT+ TLI GL
Sbjct: 383 FELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 442
Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
D A K+ + M V PD ++ L+ GLC G+L AL V E + + K+E D
Sbjct: 443 AGDCDMAQKIFKK-MVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIY 501
Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
Y+ +I + KAG+ + + + +G KPN + Y +ISGFC++ E A + EM
Sbjct: 502 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 561
Query: 320 GDKGCKANPISYNVILGGLCKDG 342
+ G N +YN ++ +DG
Sbjct: 562 KEDGTLPNSGTYNTLIRARLRDG 584
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 153/299 (51%), Gaps = 3/299 (1%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
+L Y ++ L + D +L +++ +I +I+ +I + + AL +
Sbjct: 219 DLFTYGTVVNGLCKRGDIDLALSLLKKMEKG-KIEADVVIYTTIIDALCNYKNVNDALNL 277
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
F EM + ++ V +N+L+ G+ D + L ++E+ ++P+ +++ LI V
Sbjct: 278 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 337
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
+L +A K++DEM+KR + P + T+ +LI G C+ R+DEA + E +M + P+
Sbjct: 338 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE-LMISKDCFPNVV 396
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
+ +LIKG C + + + EM + + + Y++LI LF+AG + I K+M
Sbjct: 397 TYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM 456
Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
G P+ +TY+ L+ G CK E A + + + + + +YN+++ G+CK GK
Sbjct: 457 VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGK 515
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 130/266 (48%), Gaps = 4/266 (1%)
Query: 81 PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
P + F +I G + + E A+ + D M + Q + + T++N G +D
Sbjct: 183 PNTVTFNTLIHGLFLHNKASE-AVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALS 241
Query: 140 LFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
L + MEK + D Y +I + + DA +F EM + ++P +VT+ +LI LC
Sbjct: 242 LLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 301
Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
R +A +L D++ + P+ F++LI G+L A + +EM++ I+ D
Sbjct: 302 NYGRWSDASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360
Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
YSSLI+ R +E + + M + C PN VTYN LI GFCK + E + E
Sbjct: 361 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFRE 420
Query: 319 MGDKGCKANPISYNVILGGLCKDGKC 344
M +G N ++YN ++ GL + G C
Sbjct: 421 MSQRGLVGNTVTYNTLIQGLFQAGDC 446
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 123/246 (50%), Gaps = 2/246 (0%)
Query: 99 LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
L+ A+ +F EM ++ FN LL+ K D + L + M+ +S D SYNI
Sbjct: 61 LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120
Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
LI+ +L A V +M+K +P +VT +L+ G C R+ EA+ L D M V
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALV-DQMFVM 179
Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
+P+ F +LI GL + S A+ + + MV + D Y ++++ L K G +
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239
Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
++LK+M++ + + V Y +I C ++ A + EM +KG + N ++YN ++
Sbjct: 240 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 299
Query: 338 LCKDGK 343
LC G+
Sbjct: 300 LCNYGR 305
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 103/214 (48%), Gaps = 6/214 (2%)
Query: 132 GKLDRMKELFQIMEKYVSPDACSYNI---LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV 188
+L + LF + Y S A SY+ L ++ +L+DA +F EMV+ R P++V
Sbjct: 24 AQLRKASPLFSLRGVYFS--AASYDYREKLSRNVLLDLKLDDAVDLFGEMVQSRPLPSIV 81
Query: 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248
F L+ + + D + L E M+ + D + LI C +L LAL V +
Sbjct: 82 EFNKLLSAIAKMNKFDLVISLGER-MQNLRISYDLYSYNILINCFCRRSQLPLALAVLGK 140
Query: 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308
M++ E D SSL++ R +E A++ +M +PN+VT+N LI G
Sbjct: 141 MMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNK 200
Query: 309 FEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
A ++D M +GC+ + +Y ++ GLCK G
Sbjct: 201 ASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRG 234
>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
Length = 654
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 132/265 (49%), Gaps = 2/265 (0%)
Query: 79 IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
++P ++F ++ + +AR L A +F M F V + +N L++ G +
Sbjct: 300 LLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAV 359
Query: 139 ELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
L ME +SPD +Y ILI+G + ++ +A ++F +M R+ P+ T+ +LI+G
Sbjct: 360 GLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGY 419
Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
C E +++AL L + M V+P+ F++LI G C V ++ A+G+ EM I D
Sbjct: 420 CKEYNMEQALDLCSE-MTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPD 478
Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
Y++LI A FK E + +M E G PN T+ L+ GF KE A
Sbjct: 479 VVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQ 538
Query: 318 EMGDKGCKANPISYNVILGGLCKDG 342
E + N + + ++ GLC++G
Sbjct: 539 ENNQQRSCWNHVGFTCLIEGLCQNG 563
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 145/288 (50%), Gaps = 3/288 (1%)
Query: 53 IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112
I+ L R + FD + + +QL +VP I+ + + L + ++ DEM+S
Sbjct: 170 ILNGLVRRRRFDSVW-VDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSL 228
Query: 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDA 171
++ V + + K++ +++F++M+K+ V P+ +Y+ +I G + + A
Sbjct: 229 GIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQA 288
Query: 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIK 231
+ ++ E++ L P +V FGTL+ G C + A L +++ + V P+ V+ LI
Sbjct: 289 YGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVK-FGVDPNLYVYNCLIH 347
Query: 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291
G C G + A+G+ EM + D Y+ LI+ L + E + ++MK P
Sbjct: 348 GHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFP 407
Query: 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
+S TYN+LI G+CKE + E A + EM G + N I+++ ++ G C
Sbjct: 408 SSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYC 455
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 136/299 (45%), Gaps = 3/299 (1%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
N+ Y + I L R +E +++ +K ++P + +I Y + + +A +
Sbjct: 233 NVYIYTIYILDLCRDNKMEEAEKMFELMKKHG-VLPNLYTYSAMIDGYCKTGNVRQAYGL 291
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
+ E+ + V F TL++ +L + LF M K+ V P+ YN LIHG
Sbjct: 292 YKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCK 351
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
S + +A + EM L P + T+ LI GLC+E +V EA +L + M+ + P
Sbjct: 352 SGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQK-MKNERIFPSSA 410
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
+ SLI G C + AL + EM +E + +S+LI + EM
Sbjct: 411 TYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEM 470
Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
+G P+ VTY ALI KE + + A + +M + G N ++ ++ G K+G+
Sbjct: 471 TIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGR 529
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 1/194 (0%)
Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
+ P+ Y I I ++E+A K+F+ M K + P L T+ +I G C V +A
Sbjct: 230 IKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAY 289
Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
L ++I+ V + P+ VF +L+ G C EL A + MV+ ++ + +Y+ LI
Sbjct: 290 GLYKEIL-VAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHG 348
Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
K+G E +L EM+ P+ TY LI+G C E+ A + +M ++ +
Sbjct: 349 HCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPS 408
Query: 328 PISYNVILGGLCKD 341
+YN ++ G CK+
Sbjct: 409 SATYNSLIHGYCKE 422
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 110/264 (41%), Gaps = 15/264 (5%)
Query: 93 YGRARLLERALQMFDEMSSFNVQMTVKFFNTL---LNPKLTCGKLDRM-----------K 138
Y AR L ++L + S M+ + FN L +PK + G + +
Sbjct: 91 YTLARCLIKSLIERLKRHSEPSNMSHRLFNALEDIQSPKFSIGVFSLLIMEFLEMGLFEE 150
Query: 139 ELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
L+ E SPD+ + +++G V RR + W + M+ R L P + + L + C
Sbjct: 151 ALWVSREMKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVL-FQCC 209
Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
+ + + D M +KP+ ++ I LC ++ A + E M + + +
Sbjct: 210 FKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNL 269
Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
YS++I K G + + KE+ PN V + L+ GFCK + A ++
Sbjct: 270 YTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVH 329
Query: 319 MGDKGCKANPISYNVILGGLCKDG 342
M G N YN ++ G CK G
Sbjct: 330 MVKFGVDPNLYVYNCLIHGHCKSG 353
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 127/280 (45%), Gaps = 11/280 (3%)
Query: 33 NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
++ E+ L P ++ Y ++I L E ++ ++K++ RI P + ++I
Sbjct: 363 SEMESLNLSP---DVFTYTILINGLCIEDQVAEANRLFQKMKNE-RIFPSSATYNSLIHG 418
Query: 93 YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVS 149
Y + +E+AL + EM++ V+ + F+TL++ C D M F++ K +
Sbjct: 419 YCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDG--YCNVRDIKAAMGLYFEMTIKGIV 476
Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
PD +Y LI +++A +++ +M++ + P TF L+ G E R+ A+
Sbjct: 477 PDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDF 536
Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
++ + + + F LI+GLC G + A +M I D Y S++
Sbjct: 537 YQENNQQRSCW-NHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHL 595
Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
+ R + + +M + G PN + N L++ F + +
Sbjct: 596 QEKRITDTMMLQCDMIKTGILPNLLV-NQLLARFYQANGY 634
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 26/201 (12%)
Query: 166 RRLEDAWKVFDEMVKRRLQPT--LVTFGTLIYGL----------CLELRVDEALKLKED- 212
R E+A+K+F+ + R+ + L +F +I+ L CL + E LK +
Sbjct: 52 RSAEEAFKLFETSSRSRVSKSNDLQSFSAVIHVLTGAHKYTLARCLIKSLIERLKRHSEP 111
Query: 213 ---IMRVYNVKPDGQ-------VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262
R++N D Q VF+ LI +G AL V EM K D+
Sbjct: 112 SNMSHRLFNALEDIQSPKFSIGVFSLLIMEFLEMGLFEEALWVSREM---KCSPDSKACL 168
Query: 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322
S+++ L + R + + M RG P+ Y L K+ + +LDEM
Sbjct: 169 SILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSL 228
Query: 323 GCKANPISYNVILGGLCKDGK 343
G K N Y + + LC+D K
Sbjct: 229 GIKPNVYIYTIYILDLCRDNK 249
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 153/299 (51%), Gaps = 3/299 (1%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
NL+ Y +++ L + D +L++++ +I +I+ VI + R + AL +
Sbjct: 224 NLVTYGVVVNGLCKRGDIDLAFNLLNKMEA-AKIEANVVIYSTVIDSLCKYRHEDDALNL 282
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
F EM + V+ V +++L++ + D + L ++E+ ++P+ ++N LI V
Sbjct: 283 FTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVK 342
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
+L +A K++DEM+KR + P + T+ +LI G C+ R+DEA + E +M + P+
Sbjct: 343 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE-LMISKDCFPNVV 401
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
+ +LI G C + + + EM + + + Y++LI F+A + + K+M
Sbjct: 402 TYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 461
Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
G PN +TYN L+ G CK E A + + + + +YN+++ G+CK GK
Sbjct: 462 VSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 520
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 143/286 (50%), Gaps = 13/286 (4%)
Query: 70 LHQLKHD-----------TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV 118
LH +K D +R +P F ++ + + + + + ++M + +
Sbjct: 61 LHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNL 120
Query: 119 KFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177
+N L+N ++ + L ++M+ P + + L++G +R+ DA + D+
Sbjct: 121 YTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 180
Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
MV+ +P +TF TLI+GL L + EA+ L D M +P+ + ++ GLC G
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALV-DRMVQRGCQPNLVTYGVVVNGLCKRG 239
Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
++ LA + +M KIE + IYS++I +L K +++ + EM+ +G +PN +TY+
Sbjct: 240 DIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYS 299
Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
+LIS C E + A +L +M ++ N +++N ++ K+GK
Sbjct: 300 SLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGK 345
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 147/284 (51%), Gaps = 3/284 (1%)
Query: 41 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
K R N++ Y +I+ L + + + ++L + + +I P + F +I + + L
Sbjct: 289 KGVRPNVITYSSLISCLCNYERWSDASRLLSDMI-ERKINPNVVTFNALIDAFVKEGKLV 347
Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
A +++DEM ++ + +++L+N +LD K +F++M K P+ +YN LI
Sbjct: 348 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 407
Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
+G ++R+++ ++F EM +R L VT+ TLI+G D A + + M V
Sbjct: 408 NGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQ-MVSDGV 466
Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
P+ + +L+ GLC G+L A+ V E + R K+E Y+ +I + KAG+ +
Sbjct: 467 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 526
Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
+ + +G KP+ + YN +ISGFC++ E A + +M + G
Sbjct: 527 LFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDG 570
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 124/266 (46%), Gaps = 4/266 (1%)
Query: 81 PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
P I F +I G + + E A+ + D M Q + + ++N G +D
Sbjct: 188 PDTITFTTLIHGLFLHNKASE-AVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFN 246
Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
L ME + + Y+ +I R +DA +F EM + ++P ++T+ +LI LC
Sbjct: 247 LLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLC 306
Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
R +A +L D++ + P+ F +LI G+L A + +EM++ I+ D
Sbjct: 307 NYERWSDASRLLSDMIE-RKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 365
Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
YSSLI+ R +E + + M + C PN VTYN LI+GFCK + + + E
Sbjct: 366 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFRE 425
Query: 319 MGDKGCKANPISYNVILGGLCKDGKC 344
M +G N ++Y ++ G + C
Sbjct: 426 MSQRGLVGNTVTYTTLIHGFFQARDC 451
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 124/270 (45%), Gaps = 20/270 (7%)
Query: 72 QLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131
Q K + RI P I C + ++GRA F S + +L L
Sbjct: 22 QGKGNPRIAPSSIDLCGMC-YWGRA---------FSSGSGD--------YREILRNGLHS 63
Query: 132 GKLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
KLD LF M K P +N L+ ++ + + ++M + + L T+
Sbjct: 64 MKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTY 123
Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
LI C ++ AL L +M++ +P +SL+ G C +S A+ + ++MV
Sbjct: 124 NILINCFCRRSQISLALALLGKMMKL-GYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 182
Query: 251 RDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
D +++LI LF + +E A++ M +RGC+PN VTY +++G CK D +
Sbjct: 183 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDID 242
Query: 311 AAFTILDEMGDKGCKANPISYNVILGGLCK 340
AF +L++M +AN + Y+ ++ LCK
Sbjct: 243 LAFNLLNKMEAAKIEANVVIYSTVIDSLCK 272
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 121/236 (51%), Gaps = 10/236 (4%)
Query: 61 KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
K++DEM + I P + ++I + L+ A MF+ M S + V
Sbjct: 351 KLYDEMIK--------RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 402
Query: 121 FNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
+NTL+N ++D ELF+ M ++ + + +Y LIHG +R ++A VF +MV
Sbjct: 403 YNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV 462
Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
+ P ++T+ TL+ GLC ++++A+ + E + R ++P + +I+G+C G++
Sbjct: 463 SDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS-KMEPTIYTYNIMIEGMCKAGKV 521
Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
+ + ++ D IY+++IS + G K E A+ ++M+E G P+S T
Sbjct: 522 EDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 156/297 (52%), Gaps = 3/297 (1%)
Query: 40 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
+K + +++ Y +I L +D+ ++L ++ I+P + F +I + + L
Sbjct: 273 MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG-RNIIPDVVTFSALIDVFVKEGKL 331
Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
A ++++EM + + +N+L++ L ++F +M K PD +Y+IL
Sbjct: 332 LEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSIL 391
Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
I+ ++R++D ++F E+ + L P +T+ TL+ G C +++ A +L ++ M
Sbjct: 392 INSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQE-MVSRG 450
Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
V P + L+ GLC GEL+ AL + E+M + ++ + GIY+ +I + A + ++
Sbjct: 451 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAW 510
Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
++ + ++G KP+ VTYN +I G CK+ A + +M + GC + +YN+++
Sbjct: 511 SLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 163/336 (48%), Gaps = 15/336 (4%)
Query: 11 LPRLQK--DPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQ 68
L RL K + LAL LF+ + + +++ Y ++I L + FD+
Sbjct: 217 LNRLCKSGNSALALDLFRKMEE----------RNIKASVVQYSIVIDSLCKDGSFDDALS 266
Query: 69 ILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
+ ++++ I + + ++IG + +M EM N+ V F+ L++
Sbjct: 267 LFNEMEMKG-IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVF 325
Query: 129 LTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187
+ GKL KEL+ +++ + ++PD +YN LI G L +A ++FD MV + +P +
Sbjct: 326 VKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDI 385
Query: 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
VT+ LI C RVD+ ++L +I + P+ + +L+ G C G+L+ A + +
Sbjct: 386 VTYSILINSYCKAKRVDDGMRLFREI-SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQ 444
Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
EMV + Y L+ L G N+ I ++M++ YN +I G C
Sbjct: 445 EMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNAS 504
Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
+ A+++ + DKG K + ++YNV++GGLCK G
Sbjct: 505 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGS 540
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 132/264 (50%), Gaps = 2/264 (0%)
Query: 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
P E+ + V+ ++ AL +F +M N++ +V ++ +++ G D L
Sbjct: 208 PDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSL 267
Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
F ME K + D +Y+ LI G + +D K+ EM+ R + P +VTF LI
Sbjct: 268 FNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 327
Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
E ++ EA +L + M + PD + SLI G C L A + + MV E D
Sbjct: 328 EGKLLEAKELYNE-MITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIV 386
Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
YS LI++ KA R ++ + +E+ +G PN++TYN L+ GFC+ AA + EM
Sbjct: 387 TYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM 446
Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
+G + ++Y ++L GLC +G+
Sbjct: 447 VSRGVPPSVVTYGILLDGLCDNGE 470
Score = 111 bits (278), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 129/262 (49%), Gaps = 4/262 (1%)
Query: 81 PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
P I F ++ GF R+ E A+ + D M + + +TL+N G++
Sbjct: 138 PDTITFSTLVNGFCLEGRVSE-AVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALV 196
Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
L M +Y PD +Y +++ S A +F +M +R ++ ++V + +I LC
Sbjct: 197 LIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLC 256
Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
+ D+AL L + M + +K D ++SLI GLC G+ + EM+ I D
Sbjct: 257 KDGSFDDALSLFNE-MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDV 315
Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
+S+LI K G+ E + EM RG P+++TYN+LI GFCKE A + D
Sbjct: 316 VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDL 375
Query: 319 MGDKGCKANPISYNVILGGLCK 340
M KGC+ + ++Y++++ CK
Sbjct: 376 MVSKGCEPDIVTYSILINSYCK 397
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 108/196 (55%), Gaps = 1/196 (0%)
Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
+ D + I+I+ ++L A+ V K +P +TF TL+ G CLE RV EA+
Sbjct: 101 IEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAV 160
Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
L + ++ + +PD ++LI GLC G +S AL + + MV + D Y +++
Sbjct: 161 ALVDRMVEMKQ-RPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNR 219
Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
L K+G + ++M+ER K + V Y+ +I CK+ F+ A ++ +EM KG KA+
Sbjct: 220 LCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 279
Query: 328 PISYNVILGGLCKDGK 343
++Y+ ++GGLC DGK
Sbjct: 280 VVTYSSLIGGLCNDGK 295
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 107/194 (55%), Gaps = 1/194 (0%)
Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
PD +++ L++G + R+ +A + D MV+ + +P LVT TLI GLCL+ RV EAL L
Sbjct: 138 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 197
Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
D M Y +PD + ++ LC G +LAL + +M I+ YS +I +L
Sbjct: 198 I-DRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLC 256
Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
K G ++ ++ EM+ +G K + VTY++LI G C + ++ +L EM + + +
Sbjct: 257 KDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVV 316
Query: 330 SYNVILGGLCKDGK 343
+++ ++ K+GK
Sbjct: 317 TFSALIDVFVKEGK 330
Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 129/258 (50%), Gaps = 2/258 (0%)
Query: 79 IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
I P I + ++I + + L A QMFD M S + + ++ L+N ++D
Sbjct: 346 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGM 405
Query: 139 ELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
LF +I K + P+ +YN L+ G S +L A ++F EMV R + P++VT+G L+ GL
Sbjct: 406 RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGL 465
Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
C +++AL++ E + + G ++ +I G+C ++ A + + ++ D
Sbjct: 466 CDNGELNKALEIFEKMQKSRMTLGIG-IYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPD 524
Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
Y+ +I L K G +E + ++MKE GC P+ TYN LI ++ +++
Sbjct: 525 VVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIE 584
Query: 318 EMGDKGCKANPISYNVIL 335
EM G A+ + +++
Sbjct: 585 EMKVCGFSADSSTIKMVI 602
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 131/251 (52%), Gaps = 3/251 (1%)
Query: 86 FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145
+ +I G+ R + A + D M S NV+++++ F L+ + G F ME
Sbjct: 154 YNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213
Query: 146 KY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204
Y PD +++I+I RR +A FD + K R +P ++ + L+ G C +
Sbjct: 214 DYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSL-KDRFEPDVIVYTNLVRGWCRAGEIS 272
Query: 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264
EA K+ ++ M++ ++P+ ++ +I LC G++S A V +M+ +A +++L
Sbjct: 273 EAEKVFKE-MKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNL 331
Query: 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324
+ KAGR + + +MK+ GC+P+++TYN LI C++E+ E A +L+ M K C
Sbjct: 332 MRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKC 391
Query: 325 KANPISYNVIL 335
+ N ++N I
Sbjct: 392 EVNASTFNTIF 402
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/296 (21%), Positives = 146/296 (49%), Gaps = 5/296 (1%)
Query: 50 YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
+ ++I+ L R + E Q LK R P I++ N++ + RA + A ++F EM
Sbjct: 224 FSIVISNLSRKRRASEAQSFFDSLK--DRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEM 281
Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRL 168
++ V ++ +++ CG++ R ++F +++ +P+A ++N L+ V + R
Sbjct: 282 KLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRT 341
Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
E +V+++M K +P +T+ LI C + ++ A+K+ +++ + + F +
Sbjct: 342 EKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIK-KKCEVNASTFNT 400
Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
+ + + +++ A + +M+ K E + Y+ L+ + + + KEM ++
Sbjct: 401 IFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKE 460
Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS-YNVILGGLCKDGK 343
+PN TY L++ FC + A+ + EM ++ C +S Y ++L L + G+
Sbjct: 461 VEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQ 516
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 16/300 (5%)
Query: 50 YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
+ ++I + RA + E ++++ D VP +I F VI R R A FD +
Sbjct: 189 FTILIRRYVRAGLASEAVHCFNRME-DYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSL 247
Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRL 168
+ V + L+ G++ +++F+ M+ + P+ +Y+I+I ++
Sbjct: 248 KD-RFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQI 306
Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN------VKPD 222
A VF +M+ P +TF L +RV E +++VYN +PD
Sbjct: 307 SRAHDVFADMLDSGCAPNAITFNNL-------MRVHVKAGRTEKVLQVYNQMKKLGCEPD 359
Query: 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282
+ LI+ C L A+ V M++ K E++A ++++ + K N +
Sbjct: 360 TITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYS 419
Query: 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
+M E C+PN+VTYN L+ F + + + EM DK + N +Y +++ C G
Sbjct: 420 KMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMG 479
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 2/189 (1%)
Query: 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
YN +I R+ + AW + D M R ++ ++ TF LI EA+ + M
Sbjct: 154 YNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCF-NRM 212
Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
Y PD F+ +I L S A + + +D+ E D +Y++L+ +AG
Sbjct: 213 EDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSL-KDRFEPDVIVYTNLVRGWCRAGEI 271
Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
+E + KEMK G +PN TY+ +I C+ A + +M D GC N I++N +
Sbjct: 272 SEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNL 331
Query: 335 LGGLCKDGK 343
+ K G+
Sbjct: 332 MRVHVKAGR 340
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 98/242 (40%), Gaps = 37/242 (15%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
N+ Y ++I L R + + D+ P I F N++ + +A E+ LQ+
Sbjct: 289 NVYTYSIVIDALCRCGQISRAHDVFADML-DSGCAPNAITFNNLMRVHVKAGRTEKVLQV 347
Query: 106 FDEMSSF--------------------NVQMTVKFFNTLLNPKL-----TCGKLDRMKE- 139
+++M N++ VK NT++ K T + R E
Sbjct: 348 YNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEK 407
Query: 140 ----------LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189
++ME P+ +YNIL+ V S+ + K+ EM + ++P + T
Sbjct: 408 KRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNT 467
Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
+ L+ C + A KL ++++ + P ++ ++ L G+L + E+M
Sbjct: 468 YRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKM 527
Query: 250 VR 251
++
Sbjct: 528 IQ 529
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 151/311 (48%), Gaps = 9/311 (2%)
Query: 34 DTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
D H P N + Y +I L + +E Q+L ++ VP F +VI
Sbjct: 242 DMTKHGCVP---NSVIYQTLIHSLSKCNRVNEALQLLEEM-FLMGCVPDAETFNDVILGL 297
Query: 94 GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC 153
+ + A +M + M + L+N G++D K+LF + K P+
Sbjct: 298 CKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK---PEIV 354
Query: 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKED 212
+N LIHG V RL+DA V +MV + P + T+ +LIYG E V AL++ D
Sbjct: 355 IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHD 414
Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
MR KP+ + L+ G C +G++ A V EM D ++ + ++ LISA K
Sbjct: 415 -MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEH 473
Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
R E I +EM +GCKP+ T+N+LISG C+ ++ + A +L +M +G AN ++YN
Sbjct: 474 RIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYN 533
Query: 333 VILGGLCKDGK 343
++ + G+
Sbjct: 534 TLINAFLRRGE 544
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 164/339 (48%), Gaps = 10/339 (2%)
Query: 8 LACLPRLQ--KDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDE 65
+ C+P + D L L F N ++ F + + Y ++ L + D
Sbjct: 281 MGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDA 340
Query: 66 MQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124
+ + +++ P+ +IF +I GF RL + + D ++S+ + V +N+L
Sbjct: 341 AKDLFYRIPK-----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSL 395
Query: 125 LNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
+ G + E+ M K P+ SY IL+ G ++++A+ V +EM L
Sbjct: 396 IYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGL 455
Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
+P V F LI C E R+ EA+++ ++ R KPD F SLI GLC V E+ AL
Sbjct: 456 KPNTVGFNCLISAFCKEHRIPEAVEIFREMPR-KGCKPDVYTFNSLISGLCEVDEIKHAL 514
Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
+ +M+ + + + Y++LI+A + G E ++ EM +G + +TYN+LI G
Sbjct: 515 WLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGL 574
Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
C+ + + A ++ ++M G + IS N+++ GLC+ G
Sbjct: 575 CRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSG 613
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 140/283 (49%), Gaps = 13/283 (4%)
Query: 64 DEMQQILHQLKHDTR--IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121
+E+ L L+ T+ VP +I+ +I + + ALQ+ +EM + F
Sbjct: 231 NEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETF 290
Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKYV----SPDACSYNILIHGCVVSRRLEDAWKVFDE 177
N ++ L K DR+ E +++ + + +PD +Y L++G R++ A +F
Sbjct: 291 NDVI---LGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYR 347
Query: 178 MVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237
+ K P +V F TLI+G R+D+A + D++ Y + PD + SLI G G
Sbjct: 348 IPK----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEG 403
Query: 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297
+ LAL V +M + + Y+ L+ K G+ +E +L EM G KPN+V +N
Sbjct: 404 LVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFN 463
Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
LIS FCKE A I EM KGCK + ++N ++ GLC+
Sbjct: 464 CLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCE 506
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 157/339 (46%), Gaps = 44/339 (12%)
Query: 43 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
+R++ Y ++I KLG F + ++L Q+K D IV KE +F +++ Y +A +
Sbjct: 107 YRHSFDVYQVLIGKLGANGEFKTIDRLLIQMK-DEGIVFKESLFISIMRDYDKAGFPGQT 165
Query: 103 LQMFDEMSS-FNVQMTVKFFNTLLN------------------------PKL-------- 129
++ EM + ++ + T K +N +L P L
Sbjct: 166 TRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMK 225
Query: 130 ---TCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185
++D L + M K+ P++ Y LIH R+ +A ++ +EM P
Sbjct: 226 AFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVP 285
Query: 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245
TF +I GLC R++EA K+ + M + PD + L+ GLC +G + A +
Sbjct: 286 DAETFNDVILGLCKFDRINEAAKMV-NRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDL 344
Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM-KERGCKPNSVTYNALISGFC 304
+ + +I I+++LI GR ++ A+L +M G P+ TYN+LI G+
Sbjct: 345 FYRIPKPEIV----IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYW 400
Query: 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
KE A +L +M +KGCK N SY +++ G CK GK
Sbjct: 401 KEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGK 439
Score = 108 bits (269), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 140/315 (44%), Gaps = 35/315 (11%)
Query: 63 FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
D+ + +L + IVP + ++I Y + L+ AL++ +M + + V +
Sbjct: 369 LDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYT 428
Query: 123 TLLNPKLTCGKLDRMKELFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
L++ GK+D + M + P+ +N LI R+ +A ++F EM ++
Sbjct: 429 ILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRK 488
Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR-------------------------- 215
+P + TF +LI GLC + AL L D++
Sbjct: 489 GCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEA 548
Query: 216 -------VYNVKP-DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
V+ P D + SLIKGLC GE+ A + E+M+RD + LI+
Sbjct: 549 RKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILING 608
Query: 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327
L ++G E KEM RG P+ VT+N+LI+G C+ E T+ ++ +G +
Sbjct: 609 LCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPD 668
Query: 328 PISYNVILGGLCKDG 342
+++N ++ LCK G
Sbjct: 669 TVTFNTLMSWLCKGG 683
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 147/294 (50%), Gaps = 9/294 (3%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
N+ Y +++ + DE +L+++ D + P + F +I + + + A+++
Sbjct: 423 NVYSYTILVDGFCKLGKIDEAYNVLNEMSADG-LKPNTVGFNCLISAFCKEHRIPEAVEI 481
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHG 161
F EM + V FN+L++ C ++D +K ++ +S + +YN LI+
Sbjct: 482 FREMPRKGCKPDVYTFNSLISG--LC-EVDEIKHALWLLRDMISEGVVANTVTYNTLINA 538
Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
+ +++A K+ +EMV + +T+ +LI GLC VD+A L E ++R + P
Sbjct: 539 FLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHA-P 597
Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
LI GLC G + A+ ++EMV D ++SLI+ L +AGR + +
Sbjct: 598 SNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMF 657
Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
++++ G P++VT+N L+S CK A +LDE + G N +++++L
Sbjct: 658 RKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILL 711
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 130/279 (46%), Gaps = 6/279 (2%)
Query: 33 NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
N+ A LKP N + ++ +I+ + E +I ++ P F ++I
Sbjct: 448 NEMSADGLKP---NTVGFNCLISAFCKEHRIPEAVEIFREMPRKG-CKPDVYTFNSLISG 503
Query: 93 YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP-D 151
++ AL + +M S V +NTL+N L G++ ++L M SP D
Sbjct: 504 LCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLD 563
Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
+YN LI G + ++ A +F++M++ P+ ++ LI GLC V+EA++ ++
Sbjct: 564 EITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQK 623
Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
+ M + PD F SLI GLC G + L + ++ + I D +++L+S L K
Sbjct: 624 E-MVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKG 682
Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310
G + +L E E G PN T++ L+ +E +
Sbjct: 683 GFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQETLD 721
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 128 bits (322), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 138/264 (52%), Gaps = 2/264 (0%)
Query: 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMKE 139
P + +I + + ++ A ++ D M S + +N ++ + GKLD +K
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215
Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
L Q++ P +Y ILI ++ +++A K+ DEM+ R L+P + T+ T+I G+C
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275
Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
E VD A ++ + + + +PD + L++ L G+ + +M +K + +
Sbjct: 276 EGMVDRAFEMVRN-LELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334
Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
YS LI+ L + G+ E +LK MKE+G P++ +Y+ LI+ FC+E + A L+ M
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 394
Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
GC + ++YN +L LCK+GK
Sbjct: 395 ISDGCLPDIVNYNTVLATLCKNGK 418
Score = 128 bits (321), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 151/303 (49%), Gaps = 3/303 (0%)
Query: 41 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
K F + + Y+++I L D ++L+QL D P I + +I ++
Sbjct: 187 KDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDN-CQPTVITYTILIEATMLEGGVD 245
Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILI 159
AL++ DEM S ++ + +NT++ G +DR E+ + +E K PD SYNIL+
Sbjct: 246 EALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILL 305
Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
+ + E+ K+ +M + P +VT+ LI LC + +++EA+ L + +M+ +
Sbjct: 306 RALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLK-LMKEKGL 364
Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
PD + LI C G L +A+ E M+ D D Y+++++ L K G+ ++
Sbjct: 365 TPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALE 424
Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
I ++ E GC PNS +YN + S D A ++ EM G + I+YN ++ LC
Sbjct: 425 IFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLC 484
Query: 340 KDG 342
++G
Sbjct: 485 REG 487
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 109/210 (51%), Gaps = 2/210 (0%)
Query: 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193
++ + L ++ K +PD LI G R + A +V E++++ QP + + L
Sbjct: 106 IESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVM-EILEKFGQPDVFAYNAL 164
Query: 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253
I G C R+D+A ++ D MR + PD + +I LC+ G+L LAL V +++ D
Sbjct: 165 INGFCKMNRIDDATRVL-DRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDN 223
Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
+ Y+ LI A G +E ++ EM RG KP+ TYN +I G CKE + AF
Sbjct: 224 CQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAF 283
Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
++ + KGC+ + ISYN++L L GK
Sbjct: 284 EMVRNLELKGCEPDVISYNILLRALLNQGK 313
Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 150/307 (48%), Gaps = 14/307 (4%)
Query: 37 AHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96
+ LKP ++ Y+ II + + M D +++ L + + ++I N++ RA
Sbjct: 256 SRGLKP---DMFTYNTIIRGMCKEGMVDRAFEMVRNL--ELKGCEPDVISYNILL---RA 307
Query: 97 RL----LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPD 151
L E ++ +M S V ++ L+ GK++ L ++M EK ++PD
Sbjct: 308 LLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPD 367
Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
A SY+ LI RL+ A + + M+ P +V + T++ LC + D+AL++
Sbjct: 368 AYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFG 427
Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
+ V P+ + ++ L + G+ AL + EM+ + I+ D Y+S+IS L +
Sbjct: 428 KLGEV-GCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCRE 486
Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
G +E +L +M+ P+ VTYN ++ GFCK E A +L+ M GC+ N +Y
Sbjct: 487 GMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTY 546
Query: 332 NVILGGL 338
V++ G+
Sbjct: 547 TVLIEGI 553
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 127 bits (320), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 169/368 (45%), Gaps = 73/368 (19%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
N+ ++++ +L +++ DE + ++ + P EI FC++I G+ ++ A ++
Sbjct: 411 NVRTVNIMVDRLCKSQKLDEACAMFEEMDYKV-CTPDEITFCSLIDGLGKVGRVDDAYKV 469
Query: 106 FDEM--------SSFNVQMTVKFFN-----------------------TLLNPKLTC--- 131
+++M S + FFN LLN + C
Sbjct: 470 YEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFK 529
Query: 132 -GKLDRMKELFQ-IMEKYVSPDACSYNILIHG---------------------CVVSRR- 167
G+ ++ + +F+ I + PDA SY+ILIHG CV+ R
Sbjct: 530 AGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRA 589
Query: 168 -------------LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214
+ A+++ +EM + +PT+VT+G++I GL R+DEA L E+
Sbjct: 590 YNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEE-A 648
Query: 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274
+ ++ + +++SLI G VG + A + EE+++ + + ++SL+ AL KA
Sbjct: 649 KSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEI 708
Query: 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334
NE + MKE C PN VTY LI+G CK F AF EM +G K + ISY +
Sbjct: 709 NEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTM 768
Query: 335 LGGLCKDG 342
+ GL K G
Sbjct: 769 ISGLAKAG 776
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 156/346 (45%), Gaps = 40/346 (11%)
Query: 33 NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
++ EA+ LKP + + Y +I L +A DE ++ L+ + R VP + +I
Sbjct: 262 HEIEANGLKP---DEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRR-VPCTYAYNTMIMG 317
Query: 93 YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDA 152
YG A + A + + + +V +N +L GK+D ++F+ M+K +P+
Sbjct: 318 YGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNL 377
Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
+YNILI + +L+ A+++ D M K L P + T ++ LC ++DEA + E+
Sbjct: 378 STYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEE 437
Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
M PD F SLI GL VG + A V E+M+ ++ +Y+SLI F G
Sbjct: 438 -MDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHG 496
Query: 273 RKNEFPAILKEMKERGCK-----------------------------------PNSVTYN 297
RK + I K+M + C P++ +Y+
Sbjct: 497 RKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYS 556
Query: 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
LI G K + + M ++GC + +YN+++ G CK GK
Sbjct: 557 ILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGK 602
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 145/296 (48%), Gaps = 4/296 (1%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
+++ Y+ I+T L + DE ++ ++K D P + +I RA L+ A ++
Sbjct: 342 SVIAYNCILTCLRKMGKVDEALKVFEEMKKDA--APNLSTYNILIDMLCRAGKLDTAFEL 399
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
D M + V+ N +++ KLD +F+ M+ K +PD ++ LI G
Sbjct: 400 RDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGK 459
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
R++DA+KV+++M+ + + + +LI R ++ K+ +D++ N PD Q
Sbjct: 460 VGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMIN-QNCSPDLQ 518
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
+ + + + GE + EE+ + DA YS LI L KAG NE + M
Sbjct: 519 LLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSM 578
Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
KE+GC ++ YN +I GFCK A+ +L+EM KG + ++Y ++ GL K
Sbjct: 579 KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAK 634
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 157/342 (45%), Gaps = 11/342 (3%)
Query: 6 IRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRY--NLLHYDLIITKLGRAKMF 63
I C P LQ +FK P +K R+ + Y ++I L +A
Sbjct: 509 INQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFA 568
Query: 64 DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT 123
+E ++ + +K ++ + VI + + + +A Q+ +EM + + TV + +
Sbjct: 569 NETYELFYSMKEQGCVLDTRA-YNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGS 627
Query: 124 LLNPKLTCGKLDRMKELFQIME----KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
+++ K+DR+ E + + E K + + Y+ LI G R+++A+ + +E++
Sbjct: 628 VIDG---LAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELM 684
Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
++ L P L T+ +L+ L ++EAL + M+ P+ + LI GLC V +
Sbjct: 685 QKGLTPNLYTWNSLLDALVKAEEINEALVCFQS-MKELKCTPNQVTYGILINGLCKVRKF 743
Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
+ A +EM + ++ Y+++IS L KAG E A+ K G P+S YNA+
Sbjct: 744 NKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAM 803
Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
I G AF++ +E +G + + V+L L K+
Sbjct: 804 IEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKN 845
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 140/296 (47%), Gaps = 17/296 (5%)
Query: 49 HYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDE 108
H D+++T +F +MQ++ ++ P +F +I + + ++ AL + DE
Sbjct: 183 HSDMMLT------LFQQMQELGYE--------PTVHLFTTLIRGFAKEGRVDSALSLLDE 228
Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRR 167
M S ++ + +N ++ GK+D + F +E + PD +Y +I + R
Sbjct: 229 MKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANR 288
Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
L++A ++F+ + K R P + T+I G + DEA L E R P +
Sbjct: 289 LDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLER-QRAKGSIPSVIAYN 347
Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
++ L +G++ AL V EEM +D + Y+ LI L +AG+ + + M++
Sbjct: 348 CILTCLRKMGKVDEALKVFEEMKKDAAP-NLSTYNILIDMLCRAGKLDTAFELRDSMQKA 406
Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
G PN T N ++ CK + + A + +EM K C + I++ ++ GL K G+
Sbjct: 407 GLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGR 462
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 127/274 (46%), Gaps = 5/274 (1%)
Query: 72 QLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131
Q+ + P + +IG + + L +F +M + TV F TL+
Sbjct: 157 QMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKE 216
Query: 132 GKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
G++D L M+ + D YN+ I +++ AWK F E+ L+P VT+
Sbjct: 217 GRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTY 276
Query: 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250
++I LC R+DEA+++ E + + V P + ++I G + G+ A + E
Sbjct: 277 TSMIGVLCKANRLDEAVEMFEHLEKNRRV-PCTYAYNTMIMGYGSAGKFDEAYSLLERQ- 334
Query: 251 RDKIEMDAGI-YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
R K + + I Y+ +++ L K G+ +E + +EMK + PN TYN LI C+
Sbjct: 335 RAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMK-KDAAPNLSTYNILIDMLCRAGKL 393
Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
+ AF + D M G N + N+++ LCK K
Sbjct: 394 DTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQK 427
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 119/246 (48%), Gaps = 9/246 (3%)
Query: 106 FDEMSSFNVQMTVKFF----NTLLNPKLTCGKLDRMKE---LFQIMEKY-VSPDACSYNI 157
FD + +M+V F NT + L C K ++++E + Q+M K+ P +Y
Sbjct: 114 FDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTT 173
Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
LI + +F +M + +PT+ F TLI G E RVD AL L ++ M+
Sbjct: 174 LIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDE-MKSS 232
Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
++ D ++ I VG++ +A E+ + ++ D Y+S+I L KA R +E
Sbjct: 233 SLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEA 292
Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
+ + +++ P + YN +I G+ F+ A+++L+ KG + I+YN IL
Sbjct: 293 VEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTC 352
Query: 338 LCKDGK 343
L K GK
Sbjct: 353 LRKMGK 358
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 9/222 (4%)
Query: 127 PKLTCGKLDRMK------ELFQIMEKYVSPDAC--SYNILIHGCVVSRRLEDAWKVFDEM 178
P+ G L R+K E F+ E+ C SYN L+ R + ++ EM
Sbjct: 65 PEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEM 124
Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
P++ T ++ G ++ E + + +MR + +P + +LI AV
Sbjct: 125 SVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQ-MMRKFKFRPAFSAYTTLIGAFSAVNH 183
Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298
+ L + ++M E ++++LI K GR + ++L EMK + V YN
Sbjct: 184 SDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNV 243
Query: 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
I F K + A+ E+ G K + ++Y ++G LCK
Sbjct: 244 CIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCK 285
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 164/324 (50%), Gaps = 5/324 (1%)
Query: 21 ALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80
AL +KN N N K R N++ Y+ +I L + + ++L + + +I
Sbjct: 265 ALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI-ERKIN 323
Query: 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
P + F +I + + L A +++DEM ++ + +++L+N +LD K +
Sbjct: 324 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 383
Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
F++M K P+ +YN LI G ++R+++ ++F EM +R L VT+ TLI+G
Sbjct: 384 FELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQ 443
Query: 200 ELRVDEA-LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
D A + K+ M V PD ++ L+ GLC G++ AL V E + R K+E D
Sbjct: 444 ARECDNAQIVFKQ--MVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDI 501
Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
Y+ +I + KAG+ + + + +G KPN VTY ++SGFC++ E A + E
Sbjct: 502 YTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFRE 561
Query: 319 MGDKGCKANPISYNVILGGLCKDG 342
M ++G + +YN ++ +DG
Sbjct: 562 MKEEGPLPDSGTYNTLIRAHLRDG 585
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 153/299 (51%), Gaps = 3/299 (1%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
+L+ Y +++ L + D +L +++ +I P +I+ +I + + AL +
Sbjct: 220 DLVTYGIVVNGLCKRGDIDLALSLLKKMEQG-KIEPGVVIYNTIIDALCNYKNVNDALNL 278
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
F EM + ++ V +N+L+ G+ D + L ++E+ ++P+ +++ LI V
Sbjct: 279 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 338
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
+L +A K++DEM+KR + P + T+ +LI G C+ R+DEA + E +M + P+
Sbjct: 339 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE-LMISKDCFPNVV 397
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
+ +LIKG C + + + EM + + + Y++LI F+A + + K+M
Sbjct: 398 TYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQM 457
Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
G P+ +TY+ L+ G C E A + + + + + +YN+++ G+CK GK
Sbjct: 458 VSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGK 516
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 155/335 (46%), Gaps = 37/335 (11%)
Query: 41 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
+PF +++ + +++ + + FD + + Q++ + I + +I + R L
Sbjct: 76 RPFP-SIVEFSKLLSAIAKMNKFDLVISLGEQMQ-NLGISHNLYTYSILINCFCRRSQLS 133
Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILI 159
AL + +M + + N+LLN ++ D + + Q++E PD+ ++N LI
Sbjct: 134 LALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLI 193
Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR---- 215
HG R +A + D MV + QP LVT+G ++ GLC +D AL L + + +
Sbjct: 194 HGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIE 253
Query: 216 ----VYN--------------------------VKPDGQVFASLIKGLCAVGELSLALGV 245
+YN ++P+ + SLI+ LC G S A +
Sbjct: 254 PGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRL 313
Query: 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305
+M+ KI + +S+LI A K G+ E + EM +R P+ TY++LI+GFC
Sbjct: 314 LSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 373
Query: 306 EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
+ + A + + M K C N ++YN ++ G CK
Sbjct: 374 HDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCK 408
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 142/291 (48%), Gaps = 4/291 (1%)
Query: 54 ITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFN 113
I +L K+ D + +K +R P + F ++ + + + + ++M +
Sbjct: 54 INRLNDLKLDDAVNLFGDMVK--SRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLG 111
Query: 114 VQMTVKFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAW 172
+ + ++ L+N +L + L ++M+ PD + N L++G R+ DA
Sbjct: 112 ISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAV 171
Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
+ +MV+ QP TF TLI+GL R EA+ L D M V +PD + ++ G
Sbjct: 172 SLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALV-DRMVVKGCQPDLVTYGIVVNG 230
Query: 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
LC G++ LAL + ++M + KIE IY+++I AL N+ + EM +G +PN
Sbjct: 231 LCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPN 290
Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
VTYN+LI C + A +L +M ++ N ++++ ++ K+GK
Sbjct: 291 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 341
Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 123/265 (46%), Gaps = 2/265 (0%)
Query: 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
P F +I R A+ + D M Q + + ++N G +D L
Sbjct: 184 PDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSL 243
Query: 141 FQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
+ ME+ + P YN +I + + DA +F EM + ++P +VT+ +LI LC
Sbjct: 244 LKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCN 303
Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
R +A +L D++ + P+ F++LI G+L A + +EM++ I+ D
Sbjct: 304 YGRWSDASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF 362
Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
YSSLI+ R +E + + M + C PN VTYN LI GFCK + + + EM
Sbjct: 363 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREM 422
Query: 320 GDKGCKANPISYNVILGGLCKDGKC 344
+G N ++Y ++ G + +C
Sbjct: 423 SQRGLVGNTVTYTTLIHGFFQAREC 447
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 115/232 (49%), Gaps = 10/232 (4%)
Query: 66 MQQILHQLKHDTRIVPKEIIFCNVIGF------YGRARLLERALQMFDEMSSFNVQMTVK 119
M L + KH ++ + F NV+ + + +A+ ++ +++F EMS +
Sbjct: 373 MHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTV 432
Query: 120 FFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178
+ TL++ + D + +F Q++ V PD +Y+IL+ G + ++E A VF+ +
Sbjct: 433 TYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYL 492
Query: 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238
+ +++P + T+ +I G+C +V++ L + + VKP+ + +++ G C G
Sbjct: 493 QRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCS-LSLKGVKPNVVTYTTMMSGFCRKGL 551
Query: 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
A + EM + D+G Y++LI A + G K +++EM R C+
Sbjct: 552 KEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREM--RSCR 601
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 132/254 (51%), Gaps = 3/254 (1%)
Query: 91 GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VS 149
GF R E A +F EM ++ F LL + + + Q ME Y +S
Sbjct: 45 GFLHSIRF-EDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGIS 103
Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
D S+ ILIH RL A V +M+K +P++VTFG+L++G CL R+ +A L
Sbjct: 104 HDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSL 163
Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
+M +P+ V+ +LI GLC GEL++AL + EM + + D Y++L++ L
Sbjct: 164 V-ILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLC 222
Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
+GR ++ +L++M +R P+ VT+ ALI F K+ + + A + EM N +
Sbjct: 223 YSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNV 282
Query: 330 SYNVILGGLCKDGK 343
+YN I+ GLC G+
Sbjct: 283 TYNSIINGLCMHGR 296
Score = 117 bits (294), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 145/318 (45%), Gaps = 16/318 (5%)
Query: 27 NPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF 86
+ P P+ + L NL Y+ +I + + L+ + HD F
Sbjct: 64 HSQPLPSIVDFTRLLTATANLRRYETVI--------YFSQKMELYGISHDL------YSF 109
Query: 87 CNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK 146
+I + R L AL + +M + ++ F +LL+ ++ L +M K
Sbjct: 110 TILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVK 169
Query: 147 Y-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
P+ YN LI G + L A ++ +EM K+ L +VT+ TL+ GLC R +
Sbjct: 170 SGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSD 229
Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
A ++ D+M+ ++ PD F +LI G L A + +EM++ ++ + Y+S+I
Sbjct: 230 AARMLRDMMK-RSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSII 288
Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
+ L GR + M +GC PN VTYN LISGFCK + + M +G
Sbjct: 289 NGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFN 348
Query: 326 ANPISYNVILGGLCKDGK 343
A+ +YN ++ G C+ GK
Sbjct: 349 ADIFTYNTLIHGYCQVGK 366
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 2/242 (0%)
Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
A +M +M ++ V F L++ + G LD +EL+ ++++ V P+ +YN +I+
Sbjct: 230 AARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIIN 289
Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
G + RL DA K FD M + P +VT+ TLI G C VDE +KL + M
Sbjct: 290 GLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQR-MSCEGFN 348
Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
D + +LI G C VG+L +AL + MV ++ D + L+ L G
Sbjct: 349 ADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVK 408
Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
+M+E V YN +I G CK + E A+ + + +G K + +Y +++ GLCK
Sbjct: 409 FDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCK 468
Query: 341 DG 342
+G
Sbjct: 469 NG 470
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 140/299 (46%), Gaps = 9/299 (3%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
+LLH ++ ++G D ++ +K P +++ +I + L AL++
Sbjct: 146 SLLHGFCLVNRIG-----DAFSLVILMVKSGYE--PNVVVYNTLIDGLCKNGELNIALEL 198
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
+EM + V +NTLL G+ D + L +M++ ++PD ++ LI V
Sbjct: 199 LNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVK 258
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
L++A +++ EM++ + P VT+ ++I GLC+ R+ +A K D+M P+
Sbjct: 259 QGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKK-TFDLMASKGCFPNVV 317
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
+ +LI G C + + + + M + D Y++LI + G+ I M
Sbjct: 318 TYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWM 377
Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
R P+ +T+ L+ G C + E+A D+M + ++YN+++ GLCK K
Sbjct: 378 VSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADK 436
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 138/269 (51%), Gaps = 2/269 (0%)
Query: 76 DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135
+T P E+ + V+ ++ A+++ +M N+++ ++ +++ G LD
Sbjct: 221 ETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLD 280
Query: 136 RMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194
LF ME K D +YN LI G + R +D K+ +M+KR++ P +VTF LI
Sbjct: 281 NAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLI 340
Query: 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254
E ++ EA +L +++M+ + P+ + SLI G C L A+ + + M+
Sbjct: 341 DSFVKEGKLREADQLLKEMMQ-RGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGC 399
Query: 255 EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314
+ D ++ LI+ KA R ++ + +EM RG N+VTYN L+ GFC+ E A
Sbjct: 400 DPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKK 459
Query: 315 ILDEMGDKGCKANPISYNVILGGLCKDGK 343
+ EM + + + +SY ++L GLC +G+
Sbjct: 460 LFQEMVSRRVRPDIVSYKILLDGLCDNGE 488
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 136/262 (51%), Gaps = 4/262 (1%)
Query: 81 PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMK 138
P +IF ++ G R+ E AL++ D M + T+ NTL+N GK+ D +
Sbjct: 156 PDTVIFNTLLNGLCLECRVSE-ALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVV 214
Query: 139 ELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
+ +++E P+ +Y +++ S + A ++ +M +R ++ V + +I GLC
Sbjct: 215 LIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLC 274
Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
+ +D A L + M + K D + +LI G C G + +M++ KI +
Sbjct: 275 KDGSLDNAFNLFNE-MEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNV 333
Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
+S LI + K G+ E +LKEM +RG PN++TYN+LI GFCKE E A ++D
Sbjct: 334 VTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDL 393
Query: 319 MGDKGCKANPISYNVILGGLCK 340
M KGC + +++N+++ G CK
Sbjct: 394 MISKGCDPDIMTFNILINGYCK 415
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 158/300 (52%), Gaps = 9/300 (3%)
Query: 40 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
+K F+ +++ Y+ +I A +D+ ++L + +I P + F +I + + L
Sbjct: 291 IKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK-RKISPNVVTFSVLIDSFVKEGKL 349
Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSY 155
A Q+ EM + +N+L++ C K +R++E Q+++ +S PD ++
Sbjct: 350 READQLLKEMMQRGIAPNTITYNSLIDG--FC-KENRLEEAIQMVDLMISKGCDPDIMTF 406
Query: 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215
NILI+G + R++D ++F EM R + VT+ TL+ G C +++ A KL ++ M
Sbjct: 407 NILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQE-MV 465
Query: 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275
V+PD + L+ GLC GEL AL + ++ + K+E+D GIY +I + A + +
Sbjct: 466 SRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVD 525
Query: 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
+ + + +G K ++ YN +IS C+++ A + +M ++G + ++YN+++
Sbjct: 526 DAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILI 585
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/367 (25%), Positives = 159/367 (43%), Gaps = 37/367 (10%)
Query: 12 PRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILH 71
PRL + L + L PN E NL + D + + L K D +
Sbjct: 19 PRLLETGTLRIALINCPNELLFCCERGFSTFSDRNLSYRDKLSSGLVGIKADDAVDLFRD 78
Query: 72 QLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131
++ +R +P I F + + + E L + +M S + ++ + ++N C
Sbjct: 79 MIQ--SRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRC 136
Query: 132 GKLD-RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190
KL + +IM+ PD +N L++G + R+ +A ++ D MV+ +PTL+T
Sbjct: 137 RKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITL 196
Query: 191 GTLIYGLCLELRVDEALKLKEDI----------------------------------MRV 216
TL+ GLCL +V +A+ L + + M
Sbjct: 197 NTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEE 256
Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
N+K D ++ +I GLC G L A + EM + D Y++LI AGR ++
Sbjct: 257 RNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDD 316
Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336
+L++M +R PN VT++ LI F KE A +L EM +G N I+YN ++
Sbjct: 317 GAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLID 376
Query: 337 GLCKDGK 343
G CK+ +
Sbjct: 377 GFCKENR 383
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 149/294 (50%), Gaps = 3/294 (1%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
N++ + ++I + E Q+L ++ I P I + ++I + + LE A+QM
Sbjct: 332 NVVTFSVLIDSFVKEGKLREADQLLKEMMQ-RGIAPNTITYNSLIDGFCKENRLEEAIQM 390
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
D M S + FN L+N ++D ELF+ M + V + +YN L+ G
Sbjct: 391 VDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQ 450
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
S +LE A K+F EMV RR++P +V++ L+ GLC +++AL++ I + ++ D
Sbjct: 451 SGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEK-SKMELDIG 509
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
++ +I G+C ++ A + + +++DA Y+ +IS L + ++ + ++M
Sbjct: 510 IYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKM 569
Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
E G P+ +TYN LI ++D A +++EM G A+ + +++ L
Sbjct: 570 TEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINML 623
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 123/246 (50%), Gaps = 2/246 (0%)
Query: 99 LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNI 157
L+ A +F+EM + + +NTL+ G+ D +L + ++++ +SP+ ++++
Sbjct: 279 LDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSV 338
Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
LI V +L +A ++ EM++R + P +T+ +LI G C E R++EA+++ D+M
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMV-DLMISK 397
Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
PD F LI G C + L + EM + + Y++L+ ++G+
Sbjct: 398 GCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVA 457
Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
+ +EM R +P+ V+Y L+ G C + E A I ++ + + Y +I+ G
Sbjct: 458 KKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHG 517
Query: 338 LCKDGK 343
+C K
Sbjct: 518 MCNASK 523
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 147/302 (48%), Gaps = 5/302 (1%)
Query: 41 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLL 99
+ + + + Y +II L + D + +++ + + +II N +IG + A
Sbjct: 257 RNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEM--EIKGFKADIITYNTLIGGFCNAGRW 314
Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNIL 158
+ ++ +M + V F+ L++ + GKL +L ++M++ ++P+ +YN L
Sbjct: 315 DDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSL 374
Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
I G RLE+A ++ D M+ + P ++TF LI G C R+D+ L+L + M +
Sbjct: 375 IDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFRE-MSLRG 433
Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
V + + +L++G C G+L +A + +EMV ++ D Y L+ L G +
Sbjct: 434 VIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKAL 493
Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
I ++++ + + Y +I G C + A+ + + KG K + +YN+++ L
Sbjct: 494 EIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISEL 553
Query: 339 CK 340
C+
Sbjct: 554 CR 555
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 168/340 (49%), Gaps = 12/340 (3%)
Query: 7 RLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEM 66
RL + Q++ LALQ+F ++HP F +N Y I+ KL RA+ FD +
Sbjct: 51 RLVSMITQQQNIDLALQIFLYAG------KSHP--GFTHNYDTYHSILFKLSRARAFDPV 102
Query: 67 QQILHQLKHD-TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125
+ ++ L++ I E +F +++ YG A E ++++F + F V+ +V+ NTLL
Sbjct: 103 ESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLL 162
Query: 126 NPKLTCGKLDRMKELFQIMEKY--VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
N + + D + +F+ ++ ++P+ + N+L+ +E A+KV DE+ L
Sbjct: 163 NVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGL 222
Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
P LVT+ T++ G ++ A ++ E+++ PD + L+ G C +G S A
Sbjct: 223 VPNLVTYTTILGGYVARGDMESAKRVLEEMLD-RGWYPDATTYTVLMDGYCKLGRFSEAA 281
Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
V ++M +++IE + Y +I AL K + E + EM ER P+S +I
Sbjct: 282 TVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDAL 341
Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
C++ + A + +M C + + ++ LCK+G+
Sbjct: 342 CEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGR 381
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 147/312 (47%), Gaps = 7/312 (2%)
Query: 33 NDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92
N E+ + P N+ +L++ L + + ++L ++ +VP + + ++G
Sbjct: 180 NSKESFGITP---NIFTCNLLVKALCKKNDIESAYKVLDEIP-SMGLVPNLVTYTTILGG 235
Query: 93 YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPD 151
Y +E A ++ +EM + L++ G+ + MEK + P+
Sbjct: 236 YVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPN 295
Query: 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211
+Y ++I ++ +A +FDEM++R P +I LC + +VDEA L
Sbjct: 296 EVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWR 355
Query: 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271
+++ N PD + ++LI LC G ++ A + +E + I Y++LI+ + +
Sbjct: 356 KMLK-NNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSIP-SLLTYNTLIAGMCEK 413
Query: 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
G E + +M ER CKPN+ TYN LI G K + + +L+EM + GC N ++
Sbjct: 414 GELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTF 473
Query: 332 NVILGGLCKDGK 343
++ GL K GK
Sbjct: 474 LILFEGLQKLGK 485
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 6/161 (3%)
Query: 80 VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
+P + +I + + + A ++FDE ++ ++ +NTL+ G+L
Sbjct: 363 MPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSIP-SLLTYNTLIAGMCEKGELTEAGR 421
Query: 140 LFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
L+ M E+ P+A +YN+LI G + +++ +V +EM++ P TF L GL
Sbjct: 422 LWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQ 481
Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
+ ++A+K+ M V N K D + + +K GEL
Sbjct: 482 KLGKEEDAMKIVS--MAVMNGKVDKESWELFLKKF--AGEL 518
>sp|Q9LUD6|PP230_ARATH Pentatricopeptide repeat-containing protein At3g14580,
mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2
SV=1
Length = 405
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 139/276 (50%), Gaps = 3/276 (1%)
Query: 50 YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR-ARLLERALQMFDE 108
Y L+I K G+AKM+DE+++++ +K + R E F N++ YG A + RA+++
Sbjct: 98 YALMINKFGQAKMYDEIEEVMRTIKLEKRCRFSEEFFYNLMRIYGNLAGRINRAIEILFG 157
Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRR 167
M F + K FN +LN ++ D + ++F K V DAC NILI G S
Sbjct: 158 MPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACCLNILIKGLCESGN 217
Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
LE A ++ DE +++ +P ++TF LI G C + + +EA KL E M ++PD F
Sbjct: 218 LEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLER-MEKERIEPDTITFN 276
Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
LI GL G + + + E M E + G Y ++ L R E ++ +M
Sbjct: 277 ILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLEAKEMMSQMISW 336
Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
G +P+ ++Y ++ G C+ + +L +M + G
Sbjct: 337 GMRPSFLSYKKMVLGLCETKSVVEMDWVLRQMVNHG 372
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 53/90 (58%)
Query: 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313
+E+DA + LI L ++G +L E ++ +PN +T++ LI GFC + FE AF
Sbjct: 198 VEIDACCLNILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAF 257
Query: 314 TILDEMGDKGCKANPISYNVILGGLCKDGK 343
+L+ M + + + I++N+++ GL K G+
Sbjct: 258 KLLERMEKERIEPDTITFNILISGLRKKGR 287
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%)
Query: 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320
++ +++ L A +E I + G + ++ N LI G C+ + EAA +LDE
Sbjct: 170 FNFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACCLNILIKGLCESGNLEAALQLLDEFP 229
Query: 321 DKGCKANPISYNVILGGLCKDGK 343
+ + N ++++ ++ G C GK
Sbjct: 230 QQKSRPNVMTFSPLIRGFCNKGK 252
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPIS 330
AGR N IL M + GC P+S ++N +++ + F+ I G + +
Sbjct: 145 AGRINRAIEILFGMPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACC 204
Query: 331 YNVILGGLCKDG 342
N+++ GLC+ G
Sbjct: 205 LNILIKGLCESG 216
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 155/299 (51%), Gaps = 3/299 (1%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
+L+ Y ++ L + D +L +++ +I +I+ +I + + ++ AL +
Sbjct: 222 DLVTYGTVVNGLCKRGDIDLALSLLKKMEKG-KIEADVVIYNTIIDGLCKYKHMDDALNL 280
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
F EM + ++ V +++L++ G+ D + L ++E+ ++P+ +++ LI V
Sbjct: 281 FTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 340
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
+L +A K++DEM+KR + P + T+ +LI G C+ R+DEA + E +M + P+
Sbjct: 341 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE-LMISKDCFPNVV 399
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
+++LIKG C + + + EM + + + Y++LI F+A + + K+M
Sbjct: 400 TYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 459
Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
G PN +TYN L+ G CK A + + + + + +YN+++ G+CK GK
Sbjct: 460 VSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK 518
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 134/264 (50%), Gaps = 2/264 (0%)
Query: 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
P + + V+ + ++ AL + +M ++ V +NT+++ +D L
Sbjct: 221 PDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNL 280
Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
F M+ K + PD +Y+ LI R DA ++ +M++R++ P +VTF LI
Sbjct: 281 FTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 340
Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
E ++ EA KL +++++ ++ PD ++SLI G C L A + E M+ +
Sbjct: 341 EGKLVEAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVV 399
Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
YS+LI KA R E + +EM +RG N+VTY LI GF + D + A + +M
Sbjct: 400 TYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 459
Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
G N ++YN++L GLCK+GK
Sbjct: 460 VSVGVHPNILTYNILLDGLCKNGK 483
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 156/303 (51%), Gaps = 3/303 (0%)
Query: 41 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
K R ++ Y +I+ L + + ++L + + +I P + F +I + + L
Sbjct: 287 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMI-ERKINPNVVTFSALIDAFVKEGKLV 345
Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILI 159
A +++DEM ++ + +++L+N +LD K +F++M K P+ +Y+ LI
Sbjct: 346 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLI 405
Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
G ++R+E+ ++F EM +R L VT+ TLI+G D A + + ++ V V
Sbjct: 406 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSV-GV 464
Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
P+ + L+ GLC G+L+ A+ V E + R +E D Y+ +I + KAG+ +
Sbjct: 465 HPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWE 524
Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
+ + +G PN + YN +ISGFC++ E A ++L +M + G N +YN ++
Sbjct: 525 LFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARL 584
Query: 340 KDG 342
+DG
Sbjct: 585 RDG 587
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 128/266 (48%), Gaps = 4/266 (1%)
Query: 81 PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
P F +I G + + E A+ + D+M Q + + T++N G +D
Sbjct: 186 PDTFTFTTLIHGLFLHNKASE-AVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALS 244
Query: 140 LFQIMEK-YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
L + MEK + D YN +I G + ++DA +F EM + ++P + T+ +LI LC
Sbjct: 245 LLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLC 304
Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
R +A +L D++ + P+ F++LI G+L A + +EM++ I+ D
Sbjct: 305 NYGRWSDASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 363
Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
YSSLI+ R +E + + M + C PN VTY+ LI GFCK + E + E
Sbjct: 364 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFRE 423
Query: 319 MGDKGCKANPISYNVILGGLCKDGKC 344
M +G N ++Y ++ G + C
Sbjct: 424 MSQRGLVGNTVTYTTLIHGFFQARDC 449
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 139/268 (51%), Gaps = 2/268 (0%)
Query: 77 TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD- 135
+R P + F ++ + E + + ++M + + + ++ +N +L
Sbjct: 77 SRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSL 136
Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
+ L ++M+ PD + + L++G S+R+ DA + D+MV+ +P TF TLI+
Sbjct: 137 ALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIH 196
Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
GL L + EA+ L + +++ +PD + +++ GLC G++ LAL + ++M + KIE
Sbjct: 197 GLFLHNKASEAVALVDQMVQ-RGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE 255
Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
D IY+++I L K ++ + EM +G +P+ TY++LIS C + A +
Sbjct: 256 ADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 315
Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
L +M ++ N ++++ ++ K+GK
Sbjct: 316 LSDMIERKINPNVVTFSALIDAFVKEGK 343
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 2/209 (0%)
Query: 133 KLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
K+D +LF M K P +N L+ + E + ++M + L T+
Sbjct: 63 KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122
Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
I C ++ AL + +M++ +PD +SL+ G C +S A+ + ++MV
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKL-GYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE 181
Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
+ D +++LI LF + +E A++ +M +RGC+P+ VTY +++G CK D +
Sbjct: 182 MGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDL 241
Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCK 340
A ++L +M +A+ + YN I+ GLCK
Sbjct: 242 ALSLLKKMEKGKIEADVVIYNTIIDGLCK 270
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 124 bits (312), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 118/206 (57%), Gaps = 3/206 (1%)
Query: 139 ELFQIMEKYVS--PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196
++F +M K V+ P++ SY+ILIHG RLE+A+ + D+M ++ QP+ T+ LI
Sbjct: 251 KVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKA 310
Query: 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256
LC +D+A L ++++ KP+ + LI GLC G++ A GV +MV+D+I
Sbjct: 311 LCDRGLIDKAFNLFDEMIP-RGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFP 369
Query: 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316
Y++LI+ K GR +L M++R CKPN T+N L+ G C+ A +L
Sbjct: 370 SVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLL 429
Query: 317 DEMGDKGCKANPISYNVILGGLCKDG 342
M D G + +SYNV++ GLC++G
Sbjct: 430 KRMLDNGLSPDIVSYNVLIDGLCREG 455
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 138/284 (48%), Gaps = 9/284 (3%)
Query: 61 KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120
K+FD M + + P + + +I LE A + D+M Q + +
Sbjct: 251 KVFDVMSK-------EVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRT 303
Query: 121 FNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
+ L+ G +D+ LF +++ + P+ +Y +LI G ++E+A V +MV
Sbjct: 304 YTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMV 363
Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
K R+ P+++T+ LI G C + RV A +L +M KP+ + F L++GLC VG+
Sbjct: 364 KDRIFPSVITYNALINGYCKDGRVVPAFELLT-VMEKRACKPNVRTFNELMEGLCRVGKP 422
Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
A+ + + M+ + + D Y+ LI L + G N +L M +P+ +T+ A+
Sbjct: 423 YKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAI 482
Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
I+ FCK+ + A L M KG + ++ ++ G+CK GK
Sbjct: 483 INAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGK 526
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 139/299 (46%), Gaps = 3/299 (1%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
N+ Y ++I L R +E + ++ D RI P I + +I Y + + A ++
Sbjct: 335 NVHTYTVLIDGLCRDGKIEEANGVCRKMVKD-RIFPSVITYNALINGYCKDGRVVPAFEL 393
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVV 164
M + V+ FN L+ GK + L + +++ +SPD SYN+LI G
Sbjct: 394 LTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCR 453
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
+ A+K+ M ++P +TF +I C + + D A ++R + D
Sbjct: 454 EGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLR-KGISLDEV 512
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
+LI G+C VG+ AL + E +V+ +I + ++ L K + E A+L ++
Sbjct: 513 TGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKI 572
Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
+ G P+ VTY L+ G + D +F IL+ M GC N Y +I+ GLC+ G+
Sbjct: 573 NKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGR 631
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 96/177 (54%), Gaps = 2/177 (1%)
Query: 168 LEDAWKVFDEMVKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
L DA KVFD M K P V++ LI+GLC R++EA LK D M +P + +
Sbjct: 246 LRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLK-DQMGEKGCQPSTRTY 304
Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
LIK LC G + A + +EM+ + + Y+ LI L + G+ E + ++M +
Sbjct: 305 TVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVK 364
Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
P+ +TYNALI+G+CK+ AF +L M + CK N ++N ++ GLC+ GK
Sbjct: 365 DRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGK 421
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%)
Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
+L+ G C L + +ALK+ + + + P+ ++ LI GLC VG L A G+K++M
Sbjct: 235 SLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGE 294
Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
+ Y+ LI AL G ++ + EM RGCKPN TY LI G C++ E
Sbjct: 295 KGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEE 354
Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
A + +M + I+YN ++ G CKDG+
Sbjct: 355 ANGVCRKMVKDRIFPSVITYNALINGYCKDGR 386
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 118/272 (43%), Gaps = 4/272 (1%)
Query: 70 LHQLKH--DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127
+H LK D + P + + +I R + A ++ M+ F+++ F ++N
Sbjct: 426 VHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINA 485
Query: 128 KLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
GK D +M K +S D + LI G + DA + + +VK R+ T
Sbjct: 486 FCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTT 545
Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
+ ++ L +V E L + I ++ + P + +L+ GL G+++ + +
Sbjct: 546 PHSLNVILDMLSKGCKVKEELAMLGKINKL-GLVPSVVTYTTLVDGLIRSGDITGSFRIL 604
Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
E M + Y+ +I+ L + GR E +L M++ G PN VTY ++ G+
Sbjct: 605 ELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNN 664
Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
+ A + M ++G + N Y+ +L G
Sbjct: 665 GKLDRALETVRAMVERGYELNDRIYSSLLQGF 696
>sp|Q9SZ10|PP338_ARATH Pentatricopeptide repeat-containing protein At4g26680,
mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2
SV=1
Length = 521
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 144/296 (48%), Gaps = 9/296 (3%)
Query: 50 YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI--GFYGRARLLERALQMFD 107
+D + K F Q+K D +P + CN G+ R+ + AL+ +
Sbjct: 171 FDSLFKTFAHLKKFRNATDTFMQMK-DYGFLP-TVESCNAYMSSLLGQGRV-DIALRFYR 227
Query: 108 EMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYNILIHGCVVS 165
EM + N +++ GKLD+ EL Q ME+ + + D SYN LI G
Sbjct: 228 EMRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDV-SYNTLIAGHCEK 286
Query: 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV 225
L A K+ + M K LQP +VTF TLI+G C +++ EA K+ + M+ NV P+
Sbjct: 287 GLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGE-MKAVNVAPNTVT 345
Query: 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285
+ +LI G G+ +A E+MV + I+ D Y++LI L K + + +KE+
Sbjct: 346 YNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELD 405
Query: 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
+ PNS T++ALI G C ++ + F + M GC N ++N+++ C++
Sbjct: 406 KENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRN 461
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 151/340 (44%), Gaps = 41/340 (12%)
Query: 11 LPRLQKDPKLALQLF---KNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQ 67
L ++QKD L+L+ F K NP + E H +
Sbjct: 88 LLKIQKDYLLSLEFFNWAKTRNPGSHSLETHAI--------------------------- 120
Query: 68 QILHQLKHDTRIVPKEIIFCNVI---GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124
+LH L + + E I +V+ G A++ + L + E S T + F++L
Sbjct: 121 -VLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSYRECDS-----TPRVFDSL 174
Query: 125 LNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183
K + F M+ Y P S N + + R++ A + + EM + ++
Sbjct: 175 FKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKI 234
Query: 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243
P T ++ G C ++D+ ++L +D+ R+ + + +LI G C G LS AL
Sbjct: 235 SPNPYTLNMVMSGYCRSGKLDKGIELLQDMERL-GFRATDVSYNTLIAGHCEKGLLSSAL 293
Query: 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303
+K M + ++ + +++LI +A + E + EMK PN+VTYN LI+G+
Sbjct: 294 KLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGY 353
Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
++ D E AF ++M G + + ++YN ++ GLCK K
Sbjct: 354 SQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAK 393
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 37/262 (14%)
Query: 83 EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ 142
++ + +I + LL AL++ + M +Q V FNTL++ KL ++F
Sbjct: 273 DVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFG 332
Query: 143 IMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201
M+ V+P+ +YN LI+G E A++ +++MV +Q ++T+ LI+GLC +
Sbjct: 333 EMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQA 392
Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
+ +A + +++ + N+ P+ F++LI G C VR + +Y
Sbjct: 393 KTRKAAQFVKELDK-ENLVPNSSTFSALIMGQC---------------VRKNADRGFELY 436
Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
S+I + GC PN T+N L+S FC+ EDF+ A +L EM
Sbjct: 437 KSMIRS--------------------GCHPNEQTFNMLVSAFCRNEDFDGASQVLREMVR 476
Query: 322 KGCKANPISYNVILGGLCKDGK 343
+ + + + + GL GK
Sbjct: 477 RSIPLDSRTVHQVCNGLKHQGK 498
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 154/303 (50%), Gaps = 3/303 (0%)
Query: 41 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
K + +++ Y+ ++ L +A +++ +L + IVP I F ++ + + L+
Sbjct: 257 KGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS-REIVPNVITFNVLLDVFVKEGKLQ 315
Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
A +++ EM + + + +NTL++ +L + +M + SPD ++ LI
Sbjct: 316 EANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLI 375
Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
G + +R++D KVF + KR L VT+ L+ G C ++ A +L ++ M + V
Sbjct: 376 KGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE-MVSHGV 434
Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
PD + L+ GLC G+L AL + E++ + K+++ +Y+++I + K G+ +
Sbjct: 435 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWN 494
Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
+ + +G KPN +TY +ISG CK+ A +L +M + G N +YN ++
Sbjct: 495 LFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHL 554
Query: 340 KDG 342
+DG
Sbjct: 555 RDG 557
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 147/300 (49%), Gaps = 5/300 (1%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEII-FCNVIGFYGRARLLERALQ 104
+++ Y+ I+ + R+ +L +++ R V ++ + +I R ++ A+
Sbjct: 192 DVVTYNSIVNGICRSGDTSLALDLLRKMEE--RNVKADVFTYSTIIDSLCRDGCIDAAIS 249
Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCV 163
+F EM + ++ +V +N+L+ GK + L + M + + P+ ++N+L+ V
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 309
Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
+L++A +++ EM+ R + P ++T+ TL+ G C++ R+ EA + D+M PD
Sbjct: 310 KEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML-DLMVRNKCSPDI 368
Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
F SLIKG C V + + V + + + +A YS L+ ++G+ + +E
Sbjct: 369 VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE 428
Query: 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
M G P+ +TY L+ G C E A I +++ + Y I+ G+CK GK
Sbjct: 429 MVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGK 488
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 124/264 (46%), Gaps = 2/264 (0%)
Query: 77 TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD- 135
+R +P + F R + L ++ + + N ++N C K
Sbjct: 82 SRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCF 141
Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
L ++M+ PD ++N LI G + ++ +A + D MV+ QP +VT+ +++
Sbjct: 142 AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVN 201
Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
G+C AL L M NVK D ++++I LC G + A+ + +EM I+
Sbjct: 202 GICRSGDTSLALDLLRK-MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIK 260
Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
Y+SL+ L KAG+ N+ +LK+M R PN +T+N L+ F KE + A +
Sbjct: 261 SSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANEL 320
Query: 316 LDEMGDKGCKANPISYNVILGGLC 339
EM +G N I+YN ++ G C
Sbjct: 321 YKEMITRGISPNIITYNTLMDGYC 344
Score = 108 bits (269), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 131/265 (49%), Gaps = 4/265 (1%)
Query: 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
P + + +++ R+ AL + +M NV+ V ++T+++ G +D L
Sbjct: 191 PDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISL 250
Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
F+ ME K + +YN L+ G + + D + +MV R + P ++TF L+
Sbjct: 251 FKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK 310
Query: 200 ELRVDEALKL-KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
E ++ EA +L KE I R + P+ + +L+ G C LS A + + MVR+K D
Sbjct: 311 EGKLQEANELYKEMITR--GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDI 368
Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
++SLI R ++ + + + +RG N+VTY+ L+ GFC+ + A + E
Sbjct: 369 VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE 428
Query: 319 MGDKGCKANPISYNVILGGLCKDGK 343
M G + ++Y ++L GLC +GK
Sbjct: 429 MVSHGVLPDVMTYGILLDGLCDNGK 453
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 107/216 (49%), Gaps = 36/216 (16%)
Query: 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFG------------TLIYGLCLELRVDE----- 205
+V + +DA +F EM++ R P+LV F L+ C +L ++
Sbjct: 64 IVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNI 123
Query: 206 ------------------ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
A + +M++ +PD F +LIKGL G++S A+ + +
Sbjct: 124 YTLNIMINCFCRCCKTCFAYSVLGKVMKL-GYEPDTTTFNTLIKGLFLEGKVSEAVVLVD 182
Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
MV + + D Y+S+++ + ++G + +L++M+ER K + TY+ +I C++
Sbjct: 183 RMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDG 242
Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
+AA ++ EM KG K++ ++YN ++ GLCK GK
Sbjct: 243 CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 134/274 (48%), Gaps = 18/274 (6%)
Query: 87 CN-VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145
CN VIG + R + A+ ++ +M + + + FN L+ C KL F +
Sbjct: 109 CNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLT 168
Query: 146 KY-VSPDACSYNILIHGCVVSRRLEDAWKVF---------------DEMVKRRLQPTLVT 189
K PD ++N L+HG + R+ +A +F D+MV+ L P ++T
Sbjct: 169 KLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVIT 228
Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
F TLI GLCLE RV EA L M + D + +++ G+C +G+ AL + +M
Sbjct: 229 FNTLINGLCLEGRVLEAAALVNK-MVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKM 287
Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
I+ D IYS++I L K G ++ + EM E+G PN TYN +I GFC +
Sbjct: 288 EETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRW 347
Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
A +L +M ++ + +++N ++ K+GK
Sbjct: 348 SDAQRLLRDMIEREINPDVLTFNALISASVKEGK 381
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 92/366 (25%), Positives = 159/366 (43%), Gaps = 58/366 (15%)
Query: 17 DPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD 76
D K AL L E +KP +++ Y II +L + + Q + ++ +
Sbjct: 276 DTKSALNLLSK-------MEETHIKP---DVVIYSAIIDRLCKDGHHSDAQYLFSEML-E 324
Query: 77 TRIVPKEIIF-CNVIGF--YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133
I P + C + GF +GR +R L+ +M + V FN L++ + GK
Sbjct: 325 KGIAPNVFTYNCMIDGFCSFGRWSDAQRLLR---DMIEREINPDVLTFNALISASVKEGK 381
Query: 134 LDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192
L ++L +++ + + PD +YN +I+G R +DA +FD M P +VTF T
Sbjct: 382 LFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNT 437
Query: 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR- 251
+I C RVDE ++L +I R + + + +LI G C V L+ A + +EM+
Sbjct: 438 IIDVYCRAKRVDEGMQLLREISR-RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISH 496
Query: 252 ----------------------------------DKIEMDAGIYSSLISALFKAGRKNEF 277
KI++D Y+ +I + K + +E
Sbjct: 497 GVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEA 556
Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
+ + G +P+ TYN +ISGFC + A + +M D G + + +YN ++ G
Sbjct: 557 WDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRG 616
Query: 338 LCKDGK 343
K G+
Sbjct: 617 CLKAGE 622
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 141/293 (48%), Gaps = 9/293 (3%)
Query: 52 LIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111
LI + K+F E +++ ++ H I P + + ++I + + + A MFD M+S
Sbjct: 372 LISASVKEGKLF-EAEKLCDEMLHRC-IFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS 429
Query: 112 FNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKYVSPDACSYNILIHGCVVSRRLED 170
+V FNT+++ ++D M+ L +I + + + +YN LIHG L
Sbjct: 430 PDVVT----FNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNA 485
Query: 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230
A +F EM+ + P +T L+YG C +++EAL+L E ++++ + D + +I
Sbjct: 486 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFE-VIQMSKIDLDTVAYNIII 544
Query: 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290
G+C ++ A + + +E D Y+ +IS ++ + +MK+ G +
Sbjct: 545 HGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHE 604
Query: 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
P++ TYN LI G K + + + ++ EM G + + ++ L DG+
Sbjct: 605 PDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMV-ADLITDGR 656
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 135/288 (46%), Gaps = 11/288 (3%)
Query: 54 ITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFN 113
+TKLG +LH L + RI +F G+ LE A+ +FD+M
Sbjct: 167 LTKLGFQPDVVTFNTLLHGLCLEDRISEALALF----GYMVETGFLE-AVALFDQMVEIG 221
Query: 114 VQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAW 172
+ V FNTL+N G++ L +++ K + D +Y +++G + A
Sbjct: 222 LTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSAL 281
Query: 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232
+ +M + ++P +V + +I LC + +A L +++ + P+ + +I G
Sbjct: 282 NLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLE-KGIAPNVFTYNCMIDG 340
Query: 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292
C+ G S A + +M+ +I D +++LISA K G+ E + EM R P+
Sbjct: 341 FCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPD 400
Query: 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
+VTYN++I GFCK F+ A + D M + +++N I+ C+
Sbjct: 401 TVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCR 444
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 45/98 (45%)
Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
A+ + MVR + A + +I + R + ++ ++M+ R N ++N LI
Sbjct: 90 AIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIK 149
Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
FC + + ++ G + + +++N +L GLC
Sbjct: 150 CFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLC 187
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 139/264 (52%), Gaps = 2/264 (0%)
Query: 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
P +I+ +I + +E+A +F EM + + + L+N G + E+
Sbjct: 196 PNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEM 255
Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
++ M E V P+ +YN +++ R +DA++VFDEM +R + +VT+ TLI GLC
Sbjct: 256 YEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCR 315
Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
E++++EA K+ D M+ + P+ + +LI G C VG+L AL + ++ +
Sbjct: 316 EMKLNEANKVV-DQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLV 374
Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
Y+ L+S + G + ++KEM+ERG KP+ VTY LI F + ++ E A + M
Sbjct: 375 TYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSM 434
Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
+ G + +Y+V++ G C G+
Sbjct: 435 EELGLVPDVHTYSVLIHGFCIKGQ 458
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 129/281 (45%), Gaps = 1/281 (0%)
Query: 63 FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122
F +LH L K ++ +I Y +++ L ++ F+EM FN
Sbjct: 74 FFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFN 133
Query: 123 TLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR 182
LL + ++ F + V D S+ ILI GC + +E ++ + E+ +
Sbjct: 134 YLLTFVVGSSSFNQWWSFFNENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFG 193
Query: 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242
P +V + TLI G C + +++A L ++ ++ + + + + LI GL G
Sbjct: 194 FSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKL-GLVANERTYTVLINGLFKNGVKKQG 252
Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
+ E+M D + + Y+ +++ L K GR + + EM+ERG N VTYN LI G
Sbjct: 253 FEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGG 312
Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
C+E A ++D+M G N I+YN ++ G C GK
Sbjct: 313 LCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGK 353
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 114/243 (46%), Gaps = 2/243 (0%)
Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
A Q+FDEM V + +NTL+ KL+ ++ Q+ ++P+ +YN LI
Sbjct: 287 AFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLID 346
Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
G +L A + ++ R L P+LVT+ L+ G C + A K+ ++ M +K
Sbjct: 347 GFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKE-MEERGIK 405
Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
P + LI + A+ ++ M + D YS LI G+ NE +
Sbjct: 406 PSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRL 465
Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
K M E+ C+PN V YN +I G+CKE A +L EM +K N SY ++ LCK
Sbjct: 466 FKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCK 525
Query: 341 DGK 343
+ K
Sbjct: 526 ERK 528
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 131/238 (55%), Gaps = 2/238 (0%)
Query: 99 LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNI 157
+E++ + E++ F V + TL++ G++++ K+LF M K + + +Y +
Sbjct: 179 IEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTV 238
Query: 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217
LI+G + + ++++++M + + P L T+ ++ LC + R +A ++ ++ MR
Sbjct: 239 LINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDE-MRER 297
Query: 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEF 277
V + + +LI GLC +L+ A V ++M D I + Y++LI G+ +
Sbjct: 298 GVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKA 357
Query: 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335
++ +++K RG P+ VTYN L+SGFC++ D A ++ EM ++G K + ++Y +++
Sbjct: 358 LSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILI 415
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 140/287 (48%), Gaps = 19/287 (6%)
Query: 46 NLLHYDLIITKL---GRAK----MFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRAR 97
NL Y+ ++ +L GR K +FDEM++ R V I+ N +IG R
Sbjct: 267 NLYTYNCVMNQLCKDGRTKDAFQVFDEMRE---------RGVSCNIVTYNTLIGGLCREM 317
Query: 98 LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYN 156
L A ++ D+M S + + +NTL++ GKL + L + + + +SP +YN
Sbjct: 318 KLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYN 377
Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216
IL+ G A K+ EM +R ++P+ VT+ LI +++A++L+ M
Sbjct: 378 ILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLS-MEE 436
Query: 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
+ PD ++ LI G C G+++ A + + MV E + IY+++I K G
Sbjct: 437 LGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYR 496
Query: 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
+LKEM+E+ PN +Y +I CKE + A ++++M D G
Sbjct: 497 ALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSG 543
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 130/258 (50%), Gaps = 6/258 (2%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLLERALQ 104
N++ Y+ +I L R +E +++ Q+K D I P I + +I GF G +L +AL
Sbjct: 302 NIVTYNTLIGGLCREMKLNEANKVVDQMKSDG-INPNLITYNTLIDGFCGVGKL-GKALS 359
Query: 105 MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCV 163
+ ++ S + ++ +N L++ G ++ + ME + + P +Y ILI
Sbjct: 360 LCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFA 419
Query: 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223
S +E A ++ M + L P + T+ LI+G C++ +++EA +L + ++ N +P+
Sbjct: 420 RSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVE-KNCEPNE 478
Query: 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283
++ ++I G C G AL + +EM ++ + Y +I L K + E ++++
Sbjct: 479 VIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEK 538
Query: 284 MKERGCKPNSVTYNALIS 301
M + G P S + +LIS
Sbjct: 539 MIDSGIDP-STSILSLIS 555
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 138/302 (45%), Gaps = 43/302 (14%)
Query: 84 IIFCN--VIGF--YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
++ CN +IG Y + + A ++FD+M V + V+ FN L+N GKL+
Sbjct: 166 LLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALG 225
Query: 140 LFQIM--EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
+ + M E V+PD +YN ++ RL D ++ +M K L P VT+ L+YG
Sbjct: 226 MLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGY 285
Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
C + EA ++ E +M+ NV PD + LI GLC G + L + + M K++ D
Sbjct: 286 CKLGSLKEAFQIVE-LMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPD 344
Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE---------- 307
Y++LI F+ G E ++++M+ G K N VT+N + CKEE
Sbjct: 345 VVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVK 404
Query: 308 --------------------------DFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
D A ++ EMG KG K N I+ N IL LCK+
Sbjct: 405 ELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKE 464
Query: 342 GK 343
K
Sbjct: 465 RK 466
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 148/297 (49%), Gaps = 6/297 (2%)
Query: 50 YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
Y+ I+ + + +++++L +K + +VP + + N++ Y + L+ A Q+ + M
Sbjct: 243 YNTILKAMSKKGRLSDLKELLLDMKKNG-LVPNRVTYNNLVYGYCKLGSLKEAFQIVELM 301
Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVVSRRL 168
NV + +N L+N G + EL M+ + PD +YN LI GC
Sbjct: 302 KQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLS 361
Query: 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228
+A K+ ++M ++ VT + LC E + + + ++++ ++ PD + +
Sbjct: 362 LEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHT 421
Query: 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288
LIK VG+LS AL + EM + I+M+ ++++ AL K + +E +L +RG
Sbjct: 422 LIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRG 481
Query: 289 CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI--SYNVILGGLCKDGK 343
+ VTY LI GF +EE E A + DEM K K P ++N ++GGLC GK
Sbjct: 482 FIVDEVTYGTLIMGFFREEKVEKALEMWDEM--KKVKITPTVSTFNSLIGGLCHHGK 536
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
P + + +I Y + L AL+M EM ++M NT+L+ KLD L
Sbjct: 414 PDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNL 473
Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
K D +Y LI G ++E A +++DEM K ++ PT+ TF +LI GLC
Sbjct: 474 LNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCH 533
Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
+ + A++ K D + + PD F S+I G C G + A E ++ + D
Sbjct: 534 HGKTELAME-KFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNY 592
Query: 260 IYSSLISALFKAGRK----NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
+ L++ L K G N F +++E + ++VTYN +IS FCK++ + A+ +
Sbjct: 593 TCNILLNGLCKEGMTEKALNFFNTLIEERE-----VDTVTYNTMISAFCKDKKLKEAYDL 647
Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
L EM +KG + + +YN + L +DGK
Sbjct: 648 LSEMEEKGLEPDRFTYNSFISLLMEDGK 675
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 108/197 (54%), Gaps = 5/197 (2%)
Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC---LELRVDEA 206
P ++I + + + A ++F +M++ +L+P L+T TL+ GL + A
Sbjct: 129 PSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSA 188
Query: 207 LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD-KIEMDAGIYSSLI 265
++ +D++++ V + Q F L+ G C G+L ALG+ E MV + K+ D Y++++
Sbjct: 189 REVFDDMVKI-GVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTIL 247
Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
A+ K GR ++ +L +MK+ G PN VTYN L+ G+CK + AF I++ M
Sbjct: 248 KAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVL 307
Query: 326 ANPISYNVILGGLCKDG 342
+ +YN+++ GLC G
Sbjct: 308 PDLCTYNILINGLCNAG 324
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 117/244 (47%), Gaps = 4/244 (1%)
Query: 41 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
K + N + + I+ L + + DE +L+ H + E+ + +I + R +E
Sbjct: 445 KGIKMNTITLNTILDALCKERKLDEAHNLLNS-AHKRGFIVDEVTYGTLIMGFFREEKVE 503
Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
+AL+M+DEM + TV FN+L+ GK + E F ++ E + PD ++N +I
Sbjct: 504 KALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSII 563
Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
G R+E A++ ++E +K +P T L+ GLC E ++AL ++ V
Sbjct: 564 LGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREV 623
Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
D + ++I C +L A + EM +E D Y+S IS L + G+ +E
Sbjct: 624 --DTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDE 681
Query: 280 ILKE 283
+LK+
Sbjct: 682 LLKK 685
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 149/348 (42%), Gaps = 46/348 (13%)
Query: 34 DTEAHPLKPFR--YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIG 91
D + + L P R YN L Y KLG K E QI+ +K T ++P + +I
Sbjct: 265 DMKKNGLVPNRVTYNNLVYG--YCKLGSLK---EAFQIVELMKQ-TNVLPDLCTYNILIN 318
Query: 92 FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME------ 145
A + L++ D M S +Q V +NTL++ G ++L + ME
Sbjct: 319 GLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKA 378
Query: 146 ---------KYV----------------------SPDACSYNILIHGCVVSRRLEDAWKV 174
K++ SPD +Y+ LI + L A ++
Sbjct: 379 NQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEM 438
Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
EM ++ ++ +T T++ LC E ++DEA L + + D + +LI G
Sbjct: 439 MREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFI-VDEVTYGTLIMGFF 497
Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
++ AL + +EM + KI ++SLI L G+ E+ E G P+
Sbjct: 498 REEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDS 557
Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
T+N++I G+CKE E AF +E K + + N++L GLCK+G
Sbjct: 558 TFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEG 605
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 110/222 (49%), Gaps = 4/222 (1%)
Query: 120 FFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCV---VSRRLEDAWKVF 175
F+ L+ L GK ++FQ M + + P+ + N L+ G V S + A +VF
Sbjct: 133 LFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVF 192
Query: 176 DEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235
D+MVK + + TF L+ G CLE ++++AL + E ++ + V PD + +++K +
Sbjct: 193 DDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSK 252
Query: 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295
G LS + +M ++ + + Y++L+ K G E I++ MK+ P+ T
Sbjct: 253 KGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCT 312
Query: 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337
YN LI+G C ++D M + + ++YN ++ G
Sbjct: 313 YNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDG 354
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 22/222 (9%)
Query: 55 TKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNV 114
T+L K FDE+ + + ++P + F ++I Y + +E+A + ++E +
Sbjct: 537 TELAMEK-FDELAE--------SGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSF 587
Query: 115 QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKV 174
+ N LLN G ++ F + + D +YN +I ++L++A+ +
Sbjct: 588 KPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREVDTVTYNTMISAFCKDKKLKEAYDL 647
Query: 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234
EM ++ L+P T+ + I L +E D L +++++ ++ K F S+ + L
Sbjct: 648 LSEMEEKGLEPDRFTYNSFI-SLLME---DGKLSETDELLKKFSGK-----FGSMKRDLQ 698
Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276
E + A +E ++ +A YS +I L GR E
Sbjct: 699 VETEKNPATSESKE----ELNTEAIAYSDVIDELCSRGRLKE 736
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK---EEDFEAAFTI 315
++ +SA G+ + I ++M KPN +T N L+ G + +A +
Sbjct: 132 ALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREV 191
Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
D+M G N ++NV++ G C +GK
Sbjct: 192 FDDMVKIGVSLNVQTFNVLVNGYCLEGK 219
>sp|Q9ZUU3|PP190_ARATH Pentatricopeptide repeat-containing protein At2g37230
OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1
Length = 757
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 156/315 (49%), Gaps = 15/315 (4%)
Query: 38 HPLKPFRYN----LLHYDLIITKLGRAKMFDEMQQILHQ----LKHDTRIVP-KEIIFCN 88
H L+ FR+ L+ +D T + KM E+ ++ H L + VP E +F
Sbjct: 132 HALQFFRWTERSGLIRHDRD-THMKMIKMLGEVSKLNHARCILLDMPEKGVPWDEDMFVV 190
Query: 89 VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKY 147
+I YG+A +++ ++++F +M V+ T+K +N+L L G+ K F +++ +
Sbjct: 191 LIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEG 250
Query: 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207
V P +YN+++ G +S RLE A + F++M R + P TF T+I G C ++DEA
Sbjct: 251 VEPTRHTYNLMLWGFFLSLRLETALRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAE 310
Query: 208 KLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267
KL + M+ + P + ++IKG AV + L + EEM IE +A YS+L+
Sbjct: 311 KLFVE-MKGNKIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPG 369
Query: 268 LFKAGRKNEFPAILKEMKERGCKP--NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
L AG+ E ILK M + P NS+ L+S K D AA +L M
Sbjct: 370 LCDAGKMVEAKNILKNMMAKHIAPKDNSIFLKLLVSQ-SKAGDMAAATEVLKAMATLNVP 428
Query: 326 ANPISYNVILGGLCK 340
A Y V++ CK
Sbjct: 429 AEAGHYGVLIENQCK 443
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 121/263 (46%), Gaps = 15/263 (5%)
Query: 91 GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVS 149
GF+ RL E AL+ F++M + + FNT++N K+D ++LF M+ +
Sbjct: 264 GFFLSLRL-ETALRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIG 322
Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
P SY +I G + R++D ++F+EM ++P T+ TL+ GLC ++ EA +
Sbjct: 323 PSVVSYTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNI 382
Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
+++M + D +F L+ G+++ A V + M + +AG Y LI
Sbjct: 383 LKNMMAKHIAPKDNSIFLKLLVSQSKAGDMAAATEVLKAMATLNVPAEAGHYGVLIENQC 442
Query: 270 KAGRKN----------EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
KA N E IL+ +P++ YN +I C A + ++
Sbjct: 443 KASAYNRAIKLLDTLIEKEIILRHQDTLEMEPSA--YNPIIEYLCNNGQTAKAEVLFRQL 500
Query: 320 GDKGCKANPISYNVILGGLCKDG 342
+G + + + N ++ G K+G
Sbjct: 501 MKRGVQ-DQDALNNLIRGHAKEG 522
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 137/306 (44%), Gaps = 15/306 (4%)
Query: 50 YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
++ +I R K DE +++ ++K + +I P + + +I Y ++ L++F+EM
Sbjct: 293 FNTMINGFCRFKKMDEAEKLFVEMKGN-KIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEM 351
Query: 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ-IMEKYVSPDACSYNILIHGCVVSRRL 168
S ++ ++TLL GK+ K + + +M K+++P S I + V +
Sbjct: 352 RSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKHIAPKDNS--IFLKLLVSQSKA 409
Query: 169 ED---AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL------KEDIMRVYN- 218
D A +V M + +G LI C + A+KL KE I+R +
Sbjct: 410 GDMAAATEVLKAMATLNVPAEAGHYGVLIENQCKASAYNRAIKLLDTLIEKEIILRHQDT 469
Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
++ + + +I+ LC G+ + A + ++++ ++ D ++LI K G +
Sbjct: 470 LEMEPSAYNPIIEYLCNNGQTAKAEVLFRQLMKRGVQ-DQDALNNLIRGHAKEGNPDSSY 528
Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
ILK M RG S Y LI + + + A T LD M + G + + ++ L
Sbjct: 529 EILKIMSRRGVPRESNAYELLIKSYMSKGEPGDAKTALDSMVEDGHVPDSSLFRSVIESL 588
Query: 339 CKDGKC 344
+DG+
Sbjct: 589 FEDGRV 594
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 62/137 (45%)
Query: 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261
+++ AL+ R ++ D +IK L V +L+ A + +M + D ++
Sbjct: 129 KLEHALQFFRWTERSGLIRHDRDTHMKMIKMLGEVSKLNHARCILLDMPEKGVPWDEDMF 188
Query: 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321
LI + KAG E I ++MK+ G + +YN+L + + A ++M
Sbjct: 189 VVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVS 248
Query: 322 KGCKANPISYNVILGGL 338
+G + +YN++L G
Sbjct: 249 EGVEPTRHTYNLMLWGF 265
>sp|Q84J71|PP161_ARATH Pentatricopeptide repeat-containing protein At2g17670
OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1
Length = 463
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 119/211 (56%), Gaps = 3/211 (1%)
Query: 132 GKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR-RLQPTLVT 189
G++D K+L ++ EK+ PD +YN L+ + L ++ DEM ++P LV+
Sbjct: 173 GRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVS 232
Query: 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249
F LI +C + EA+ L + KPD ++ +++KG C + + S A+GV ++M
Sbjct: 233 FTILIDNVCNSKNLREAMYLVSKLGNA-GFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKM 291
Query: 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309
+ +E D Y++LI L KAGR E LK M + G +P++ TY +L++G C++ +
Sbjct: 292 KEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGES 351
Query: 310 EAAFTILDEMGDKGCKANPISYNVILGGLCK 340
A ++L+EM +GC N +YN +L GLCK
Sbjct: 352 LGALSLLEEMEARGCAPNDCTYNTLLHGLCK 382
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 113/244 (46%), Gaps = 8/244 (3%)
Query: 35 TEAH-PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93
TE H P + YN L + L + K + + + +++ D + P + F +I
Sbjct: 186 TEKHSPPDTYTYNFL-----LKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNV 240
Query: 94 GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDA 152
++ L A+ + ++ + + +NT++ T K +++ M E+ V PD
Sbjct: 241 CNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQ 300
Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
+YN LI G + R+E+A MV +P T+ +L+ G+C + AL L E+
Sbjct: 301 ITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEE 360
Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
M P+ + +L+ GLC + + + E M +++++ Y++L+ +L K+G
Sbjct: 361 -MEARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKSG 419
Query: 273 RKNE 276
+ E
Sbjct: 420 KVAE 423
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 9/182 (4%)
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLI---YGLCLELRVDEALKLKEDIMRVY-NVK 220
S L DA +F+ + P + F + YG V++ +KL + I++ N +
Sbjct: 62 SPNLSDAKSLFNSIAATSRIPLDLKFHNSVLQSYGSIA--VVNDTVKLFQHILKSQPNFR 119
Query: 221 PDGQVFASLIKGLCAVGELSLA--LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
P F L+ C + S++ V MV + +E D + +L + GR +E
Sbjct: 120 PGRSTFLILLSHACRAPDSSISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAK 179
Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK-GCKANPISYNVILGG 337
++KE+ E+ P++ TYN L+ CK +D + +DEM D K + +S+ +++
Sbjct: 180 DLMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDN 239
Query: 338 LC 339
+C
Sbjct: 240 VC 241
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 97/250 (38%), Gaps = 48/250 (19%)
Query: 43 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERA 102
F+ + Y+ I+ E + ++K + + P +I + +I +A +E A
Sbjct: 261 FKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEG-VEPDQITYNTLIFGLSKAGRVEEA 319
Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHG 161
M + + +L+N G+ L + ME + +P+ C+YN L+H
Sbjct: 320 RMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLH- 378
Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
GLC +D+ ++L E +M+ VK
Sbjct: 379 ----------------------------------GLCKARLMDKGMELYE-MMKSSGVKL 403
Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
+ +A+L++ L G+++ A V + V K DA YS+L + L L
Sbjct: 404 ESNGYATLVRSLVKSGKVAEAYEVFDYAVDSKSLSDASAYSTLETTL----------KWL 453
Query: 282 KEMKERGCKP 291
K+ KE+G P
Sbjct: 454 KKAKEQGLVP 463
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
+L M G +P+ VT + + C+ + A ++ E+ +K + +YN +L LC
Sbjct: 146 VLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLC 205
Query: 340 K 340
K
Sbjct: 206 K 206
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 163/336 (48%), Gaps = 30/336 (8%)
Query: 17 DPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD 76
+P LAL L N E ++ +++ Y+ II L + K D+ + +++ +
Sbjct: 230 EPDLALNLL-------NKMEKGKIEA---DVVIYNTIIDGLCKYKHMDDAFDLFNKM--E 277
Query: 77 TRIVPKEII--------FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128
T+ + ++ CN YGR A ++ +M N+ + FFN L++
Sbjct: 278 TKGIKPDVFTYNPLISCLCN----YGR---WSDASRLLSDMLEKNINPDLVFFNALIDAF 330
Query: 129 LTCGKLDRMKELFQIM--EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186
+ GKL ++L+ M K+ PD +YN LI G +R+E+ +VF EM +R L
Sbjct: 331 VKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 390
Query: 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246
VT+ TLI+G D A + + M V PD + L+ GLC G + AL V
Sbjct: 391 TVTYTTLIHGFFQARDCDNAQMVFKQ-MVSDGVHPDIMTYNILLDGLCNNGNVETALVVF 449
Query: 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306
E M + +++D Y+++I AL KAG+ + + + +G KPN VTY ++SGFC++
Sbjct: 450 EYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRK 509
Query: 307 EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
E A + EM + G N +YN ++ +DG
Sbjct: 510 GLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDG 545
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 121/243 (49%), Gaps = 1/243 (0%)
Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIH 160
AL + ++M ++ V +NT+++ +D +LF ME K + PD +YN LI
Sbjct: 234 ALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLIS 293
Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
R DA ++ +M+++ + P LV F LI E ++ EA KL +++++ +
Sbjct: 294 CLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCF 353
Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
PD + +LIKG C + + V EM + + + Y++LI F+A + +
Sbjct: 354 PDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 413
Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
K+M G P+ +TYN L+ G C + E A + + M + K + ++Y ++ LCK
Sbjct: 414 FKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCK 473
Query: 341 DGK 343
GK
Sbjct: 474 AGK 476
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 132/268 (49%), Gaps = 2/268 (0%)
Query: 77 TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD- 135
+R P + F ++ + + + + ++M + + + ++ +N +L
Sbjct: 69 SRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSL 128
Query: 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195
+ L ++M+ P + N L++G R+ +A + D+MV+ QP VTF TL++
Sbjct: 129 ALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVH 188
Query: 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255
GL + EA+ L E M V +PD + ++I GLC GE LAL + +M + KIE
Sbjct: 189 GLFQHNKASEAVALVER-MVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIE 247
Query: 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315
D IY+++I L K ++ + +M+ +G KP+ TYN LIS C + A +
Sbjct: 248 ADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRL 307
Query: 316 LDEMGDKGCKANPISYNVILGGLCKDGK 343
L +M +K + + +N ++ K+GK
Sbjct: 308 LSDMLEKNINPDLVFFNALIDAFVKEGK 335
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 147/341 (43%), Gaps = 40/341 (11%)
Query: 41 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLE 100
+PF +++ + +++ + + FD + + Q++ + I + I ++ R L
Sbjct: 70 RPFP-SIVEFSKLLSAIAKMNKFDLVISLGEQMQ-NLGISHNLYTYSIFINYFCRRSQLS 127
Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILI 159
AL + +M ++ N+LLN ++ L Q++E PD ++ L+
Sbjct: 128 LALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLV 187
Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL---------KLK 210
HG + +A + + MV + QP LVT+G +I GLC D AL K++
Sbjct: 188 HGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIE 247
Query: 211 EDIMRVYN--------------------------VKPDGQVFASLIKGLCAVGELSLALG 244
D++ +YN +KPD + LI LC G S A
Sbjct: 248 ADVV-IYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASR 306
Query: 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM-KERGCKPNSVTYNALISGF 303
+ +M+ I D +++LI A K G+ E + EM K + C P+ V YN LI GF
Sbjct: 307 LLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGF 366
Query: 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344
CK + E + EM +G N ++Y ++ G + C
Sbjct: 367 CKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDC 407
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 35/226 (15%)
Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
S D C N L + +L+DA +F +MVK R P++V F L+ + + D +
Sbjct: 38 SSDDCREN-LSRKVLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVIS 96
Query: 209 LKEDI--------MRVYNV--------------------------KPDGQVFASLIKGLC 234
L E + + Y++ P SL+ G C
Sbjct: 97 LGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFC 156
Query: 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294
+S A+ + ++MV + D +++L+ LF+ + +E A+++ M +GC+P+ V
Sbjct: 157 HGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLV 216
Query: 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
TY A+I+G CK + + A +L++M +A+ + YN I+ GLCK
Sbjct: 217 TYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCK 262
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 150/304 (49%), Gaps = 13/304 (4%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLK-----HDTRIVPKEIIFCNVIGFYGRARLLE 100
+++ + +++K+ ++K +D + + H ++ HD + I VI R
Sbjct: 68 SIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHD--LYSYNI----VINCLCRCSRFV 121
Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILI 159
AL + +M F + V ++L+N ++ +L ME+ PD YN +I
Sbjct: 122 IALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTII 181
Query: 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219
G + DA ++FD M + ++ VT+ +L+ GLC R +A +L D M + ++
Sbjct: 182 DGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRD-MVMRDI 240
Query: 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279
P+ F ++I G+ S A+ + EEM R ++ D Y+SLI+ L GR +E
Sbjct: 241 VPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQ 300
Query: 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
+L M +GC P+ VTYN LI+GFCK + + + EM +G + I+YN I+ G
Sbjct: 301 MLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYF 360
Query: 340 KDGK 343
+ G+
Sbjct: 361 QAGR 364
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 131/246 (53%), Gaps = 5/246 (2%)
Query: 79 IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138
IVP I F VI + + A+++++EM+ V V +N+L+N G++D K
Sbjct: 240 IVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAK 299
Query: 139 ELFQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197
++ +M K PD +YN LI+G S+R+++ K+F EM +R L +T+ T+I G
Sbjct: 300 QMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGY 359
Query: 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257
R D A ++I + +P+ + ++ L+ GLC + AL + E M + +IE+D
Sbjct: 360 FQAGRPDAA----QEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELD 415
Query: 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317
Y+ +I + K G + + + + +G KP+ V+Y +ISGFC++ ++ + +
Sbjct: 416 ITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYR 475
Query: 318 EMGDKG 323
+M + G
Sbjct: 476 KMQEDG 481
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 126/263 (47%), Gaps = 5/263 (1%)
Query: 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
P +I+ +I + L+ A+++FD M V+ +N+L+ G+ L
Sbjct: 172 PDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARL 231
Query: 141 FQIM-EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
+ M + + P+ ++ +I V + +A K+++EM +R + P + T+ +LI GLC+
Sbjct: 232 MRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCM 291
Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
RVDEA ++ D+M PD + +LI G C + + EM + + D
Sbjct: 292 HGRVDEAKQML-DLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTI 350
Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
Y+++I F+AGR + I M R PN TY+ L+ G C E A + + M
Sbjct: 351 TYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENM 407
Query: 320 GDKGCKANPISYNVILGGLCKDG 342
+ + +YN+++ G+CK G
Sbjct: 408 QKSEIELDITTYNIVIHGMCKIG 430
Score = 38.5 bits (88), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 5/141 (3%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
+ + Y+ II +A D Q+I ++ I I+ + G R+ E+AL +
Sbjct: 348 DTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSIL---LYGLCMNWRV-EKALVL 403
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVV 164
F+ M +++ + +N +++ G ++ +LF+ + K + PD SY +I G
Sbjct: 404 FENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCR 463
Query: 165 SRRLEDAWKVFDEMVKRRLQP 185
R+ + + ++ +M + L P
Sbjct: 464 KRQWDKSDLLYRKMQEDGLLP 484
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 150/312 (48%), Gaps = 21/312 (6%)
Query: 33 NDTEAHPLKPFRYNLLHYDLIITKLGR--------AKMFDEMQQILHQLKHDTRIVPKEI 84
N + + L+P NL+ Y+ +I G+ AK FDEMQ+ + P I
Sbjct: 292 NSMKEYGLRP---NLVTYNAVIDACGKGGMEFKQVAKFFDEMQR--------NGVQPDRI 340
Query: 85 IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE-LFQI 143
F +++ R L E A +FDEM++ ++ V +NTLL+ G++D E L Q+
Sbjct: 341 TFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQM 400
Query: 144 MEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203
K + P+ SY+ +I G + R ++A +F EM + V++ TL+ R
Sbjct: 401 PVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRS 460
Query: 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263
+EAL + ++ V +K D + +L+ G G+ V EM R+ + + YS+
Sbjct: 461 EEALDILREMASV-GIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYST 519
Query: 264 LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323
LI K G E I +E K G + + V Y+ALI CK +A +++DEM +G
Sbjct: 520 LIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEG 579
Query: 324 CKANPISYNVIL 335
N ++YN I+
Sbjct: 580 ISPNVVTYNSII 591
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 143/295 (48%), Gaps = 4/295 (1%)
Query: 50 YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL-LERALQMFDE 108
+ +I+ GR+ + +E + + +K + + P + + VI G+ + ++ + FDE
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMK-EYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDE 329
Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVVSRR 167
M VQ FN+LL G + + LF ++ + + D SYN L+ +
Sbjct: 330 MQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQ 389
Query: 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA 227
++ A+++ +M +R+ P +V++ T+I G R DEAL L + MR + D +
Sbjct: 390 MDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGE-MRYLGIALDRVSYN 448
Query: 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287
+L+ VG AL + EM I+ D Y++L+ K G+ +E + EMK
Sbjct: 449 TLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKRE 508
Query: 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
PN +TY+ LI G+ K ++ A I E G +A+ + Y+ ++ LCK+G
Sbjct: 509 HVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNG 563
Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 127/258 (49%), Gaps = 6/258 (2%)
Query: 88 NVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY 147
+ +G YG+ + +R +F+ + TV F+ L++ G + +F M++Y
Sbjct: 241 STLGRYGKVTIAKR---IFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEY 297
Query: 148 -VSPDACSYNILIHGCVVS-RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205
+ P+ +YN +I C + K FDEM + +QP +TF +L+ +C + E
Sbjct: 298 GLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLL-AVCSRGGLWE 356
Query: 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265
A + D M ++ D + +L+ +C G++ LA + +M +I + YS++I
Sbjct: 357 AARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVI 416
Query: 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325
KAGR +E + EM+ G + V+YN L+S + K E A IL EM G K
Sbjct: 417 DGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIK 476
Query: 326 ANPISYNVILGGLCKDGK 343
+ ++YN +LGG K GK
Sbjct: 477 KDVVTYNALLGGYGKQGK 494
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 148/285 (51%), Gaps = 8/285 (2%)
Query: 41 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI-GFYGRARLL 99
K R N++ Y ++ L + + + ++L + +I P I + ++ F ++L
Sbjct: 219 KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK-KKITPNVITYSALLDAFVKNGKVL 277
Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNIL 158
E A ++F+EM ++ + +++L+N ++D ++F +M K D SYN L
Sbjct: 278 E-AKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTL 336
Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
I+G ++R+ED K+F EM +R L VT+ TLI G VD+A + M +
Sbjct: 337 INGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQ-MDFFG 395
Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
+ PD + L+ GLC GEL AL + E+M + ++++D Y+++I + K G+ E
Sbjct: 396 ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAW 455
Query: 279 AILKEMKERGCKPNSVTYNALISGFCKE---EDFEAAFTILDEMG 320
++ + +G KP+ VTY ++SG C + + EA +T + + G
Sbjct: 456 SLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500
Score = 121 bits (303), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 138/264 (52%), Gaps = 2/264 (0%)
Query: 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
P + +++ + R + A+ + D+M + + +N +++ +++ +
Sbjct: 153 PDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDF 212
Query: 141 FQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
F+ +E K + P+ +Y L++G S R DA ++ +M+K+++ P ++T+ L+
Sbjct: 213 FKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVK 272
Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
+V EA +L E+++R+ ++ PD ++SLI GLC + A + + MV D
Sbjct: 273 NGKVLEAKELFEEMVRM-SIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVV 331
Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
Y++LI+ KA R + + +EM +RG N+VTYN LI GF + D + A +M
Sbjct: 332 SYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 391
Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
G + +YN++LGGLC +G+
Sbjct: 392 DFFGISPDIWTYNILLGGLCDNGE 415
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 131/264 (49%), Gaps = 2/264 (0%)
Query: 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKE 139
P + + +I + + + A F E+ ++ V + L+N + D +
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 247
Query: 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
L +++K ++P+ +Y+ L+ V + ++ +A ++F+EMV+ + P +VT+ +LI GLCL
Sbjct: 248 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCL 307
Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
R+DEA ++ D+M D + +LI G C + + + EM + + +
Sbjct: 308 HDRIDEANQM-FDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTV 366
Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
Y++LI F+AG ++ +M G P+ TYN L+ G C + E A I ++M
Sbjct: 367 TYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM 426
Query: 320 GDKGCKANPISYNVILGGLCKDGK 343
+ + ++Y ++ G+CK GK
Sbjct: 427 QKREMDLDIVTYTTVIRGMCKTGK 450
Score = 111 bits (278), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 142/287 (49%), Gaps = 4/287 (1%)
Query: 55 TKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNV 114
T+L K+ D + +K +R P + F ++ + + + + + +M +
Sbjct: 59 TRLRDIKLNDAIDLFSDMVK--SRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGI 116
Query: 115 QMTVKFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWK 173
+ + FN ++N C ++ + L ++++ PD + L++G R+ DA
Sbjct: 117 RNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVS 176
Query: 174 VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGL 233
+ D+MV+ +P +V + +I LC RV++A ++I R ++P+ + +L+ GL
Sbjct: 177 LVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIER-KGIRPNVVTYTALVNGL 235
Query: 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293
C S A + +M++ KI + YS+L+ A K G+ E + +EM P+
Sbjct: 236 CNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDI 295
Query: 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
VTY++LI+G C + + A + D M KGC A+ +SYN ++ G CK
Sbjct: 296 VTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCK 342
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 2/212 (0%)
Query: 133 KLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191
KL+ +LF M K P +N L+ V ++ + + +M ++ L TF
Sbjct: 65 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124
Query: 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251
+I C +V AL + ++++ +PD SL+ G C +S A+ + ++MV
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKL-GYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE 183
Query: 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEA 311
+ D Y+++I +L K R N+ KE++ +G +PN VTY AL++G C +
Sbjct: 184 IGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSD 243
Query: 312 AFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
A +L +M K N I+Y+ +L K+GK
Sbjct: 244 AARLLSDMIKKKITPNVITYSALLDAFVKNGK 275
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 121 bits (304), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 131/243 (53%), Gaps = 2/243 (0%)
Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIH 160
AL + ++M + ++ V ++T+++ D LF ME K V P+ +Y+ LI
Sbjct: 237 ALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLIS 296
Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
R DA ++ +M++R++ P LVTF LI + ++ +A KL E++++ ++
Sbjct: 297 CLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIK-RSID 355
Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
P+ ++SLI G C + L A + E M+R + Y++LI+ KA R ++ +
Sbjct: 356 PNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMEL 415
Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
+EM +RG N+VTY LI GF + D + A + +M G N ++YN++L GLCK
Sbjct: 416 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCK 475
Query: 341 DGK 343
+GK
Sbjct: 476 NGK 478
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 153/299 (51%), Gaps = 3/299 (1%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
+L+ Y ++ L + D +L++++ +I +I+ VI + R + AL +
Sbjct: 217 DLVTYGAVVNGLCKRGDTDLALNLLNKMEA-AKIEANVVIYSTVIDSLCKYRHEDDALNL 275
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVV 164
F EM + V+ V +++L++ G+ D + L ++E+ ++P+ +++ LI V
Sbjct: 276 FTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVK 335
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
+L A K+++EM+KR + P + T+ +LI G C+ R+ EA ++ E ++R + P+
Sbjct: 336 KGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIR-KDCLPNVV 394
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
+ +LI G C + + + EM + + + Y++LI F+A + + K+M
Sbjct: 395 TYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 454
Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
G PN +TYN L+ G CK A + + + + + +YN+++ G+CK GK
Sbjct: 455 VSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK 513
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 124/266 (46%), Gaps = 4/266 (1%)
Query: 81 PKEIIFCNVI-GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139
P + F +I G + + E A+ + D M Q + + ++N G D
Sbjct: 181 PDTVTFTTLIHGLFLHNKASE-AVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALN 239
Query: 140 LFQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198
L ME + + Y+ +I R +DA +F EM + ++P ++T+ +LI LC
Sbjct: 240 LLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLC 299
Query: 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA 258
R +A +L D++ + P+ F++LI G+L A + EEM++ I+ +
Sbjct: 300 NYGRWSDASRLLSDMIE-RKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNI 358
Query: 259 GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDE 318
YSSLI+ R E +L+ M + C PN VTYN LI+GFCK + + + E
Sbjct: 359 FTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFRE 418
Query: 319 MGDKGCKANPISYNVILGGLCKDGKC 344
M +G N ++Y ++ G + C
Sbjct: 419 MSQRGLVGNTVTYTTLIHGFFQARDC 444
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 139/302 (46%), Gaps = 19/302 (6%)
Query: 60 AKMFDEMQQILHQ---LKHDTRIVPKEIIFCNVIGFYGRARL--------------LERA 102
AK+ ++ +H+ ++ + P FC F G+ L+ A
Sbjct: 3 AKISSSAKRFVHRSLVVRGNAATFPLSFSFCRRRAFSGKTSYDYREVLRTGLSDIELDDA 62
Query: 103 LQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHG 161
+ +F M+ ++ F+ LL+ K D + + ME +S + +YNILI+
Sbjct: 63 IGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINC 122
Query: 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP 221
RL A + +M+K +P +VT +L+ G C R+ +A+ L + ++ + KP
Sbjct: 123 FCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEM-GYKP 181
Query: 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281
D F +LI GL + S A+ + + MV+ + D Y ++++ L K G + +L
Sbjct: 182 DTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLL 241
Query: 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341
+M+ + N V Y+ +I CK + A + EM +KG + N I+Y+ ++ LC
Sbjct: 242 NKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNY 301
Query: 342 GK 343
G+
Sbjct: 302 GR 303
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 119/223 (53%), Gaps = 2/223 (0%)
Query: 121 FNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179
++T++N G+LD++ +L ++M+ K + P++ Y +I +L +A + F EM+
Sbjct: 284 YSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMI 343
Query: 180 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239
++ + P V + TLI G C + A K + M ++ PD + ++I G C +G++
Sbjct: 344 RQGILPDTVVYTTLIDGFCKRGDIRAASKFFYE-MHSRDITPDVLTYTAIISGFCQIGDM 402
Query: 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299
A + EM +E D+ ++ LI+ KAG + + M + GC PN VTY L
Sbjct: 403 VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 462
Query: 300 ISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
I G CKE D ++A +L EM G + N +YN I+ GLCK G
Sbjct: 463 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSG 505
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 151/314 (48%), Gaps = 9/314 (2%)
Query: 36 EAH------PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNV 89
EAH LK + +++ Y ++ R D++ +++ +K + P I+ ++
Sbjct: 264 EAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG-LKPNSYIYGSI 322
Query: 90 IGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYV 148
IG R L A + F EM + + TL++ G + + F ++ + +
Sbjct: 323 IGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDI 382
Query: 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208
+PD +Y +I G + +A K+F EM + L+P VTF LI G C + +A +
Sbjct: 383 TPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFR 442
Query: 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268
+ +++ P+ + +LI GLC G+L A + EM + ++ + Y+S+++ L
Sbjct: 443 VHNHMIQA-GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGL 501
Query: 269 FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328
K+G E ++ E + G ++VTY L+ +CK + + A IL EM KG +
Sbjct: 502 CKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTI 561
Query: 329 ISYNVILGGLCKDG 342
+++NV++ G C G
Sbjct: 562 VTFNVLMNGFCLHG 575
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 151/301 (50%), Gaps = 6/301 (1%)
Query: 40 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL 99
LKP Y Y II L R E ++ ++ I+P +++ +I + + +
Sbjct: 312 LKPNSY---IYGSIIGLLCRICKLAEAEEAFSEMIRQG-ILPDTVVYTTLIDGFCKRGDI 367
Query: 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME-KYVSPDACSYNIL 158
A + F EM S ++ V + +++ G + +LF M K + PD+ ++ L
Sbjct: 368 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 427
Query: 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218
I+G + ++DA++V + M++ P +VT+ TLI GLC E +D A +L ++ ++
Sbjct: 428 INGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI-G 486
Query: 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278
++P+ + S++ GLC G + A+ + E + D Y++L+ A K+G ++
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 546
Query: 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
ILKEM +G +P VT+N L++GFC E +L+ M KG N ++N ++
Sbjct: 547 EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 606
Query: 339 C 339
C
Sbjct: 607 C 607
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 143/303 (47%), Gaps = 9/303 (2%)
Query: 45 YNLLHYDLII---TKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLER 101
+N+ Y+++I +LGR K + +L +LK T P I + V+ Y R L++
Sbjct: 244 WNVASYNIVIHFVCQLGRIKEAHHLL-LLMELKGYT---PDVISYSTVVNGYCRFGELDK 299
Query: 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIH 160
++ + M ++ + +++ KL +E F +++ + + PD Y LI
Sbjct: 300 VWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLID 359
Query: 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220
G + A K F EM R + P ++T+ +I G C + EA KL + M ++
Sbjct: 360 GFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE-MFCKGLE 418
Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
PD F LI G C G + A V M++ + Y++LI L K G + +
Sbjct: 419 PDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANEL 478
Query: 281 LKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340
L EM + G +PN TYN++++G CK + E A ++ E G A+ ++Y ++ CK
Sbjct: 479 LHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 538
Query: 341 DGK 343
G+
Sbjct: 539 SGE 541
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 2/248 (0%)
Query: 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140
P + + +I + L+ A ++ EM +Q + +N+++N G ++ +L
Sbjct: 454 PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL 513
Query: 141 FQIMEKY-VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199
E ++ D +Y L+ S ++ A ++ EM+ + LQPT+VTF L+ G CL
Sbjct: 514 VGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCL 573
Query: 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259
+++ KL + M + P+ F SL+K C L A + ++M + D
Sbjct: 574 HGMLEDGEKLL-NWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGK 632
Query: 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319
Y +L+ KA E + +EMK +G + TY+ LI GF K + F A + D+M
Sbjct: 633 TYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQM 692
Query: 320 GDKGCKAN 327
+G A+
Sbjct: 693 RREGLAAD 700
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 135/299 (45%), Gaps = 3/299 (1%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
++L Y II+ + E ++ H++ + P + F +I Y +A ++ A ++
Sbjct: 385 DVLTYTAIISGFCQIGDMVEAGKLFHEM-FCKGLEPDSVTFTELINGYCKAGHMKDAFRV 443
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-VSPDACSYNILIHGCVV 164
+ M V + TL++ G LD EL M K + P+ +YN +++G
Sbjct: 444 HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCK 503
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
S +E+A K+ E L VT+ TL+ C +D+A ++ ++++ ++P
Sbjct: 504 SGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLG-KGLQPTIV 562
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
F L+ G C G L + M+ I +A ++SL+ AI K+M
Sbjct: 563 TFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDM 622
Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
RG P+ TY L+ G CK + + A+ + EM KG + +Y+V++ G K K
Sbjct: 623 CSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKK 681
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 4/132 (3%)
Query: 216 VYNVK---PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
VY K D +VF + L G L A V E+M+ + + + ++ L K
Sbjct: 165 VYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDC 224
Query: 273 RKNEFPAIL-KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISY 331
K I+ +E E G N +YN +I C+ + A +L M KG + ISY
Sbjct: 225 YKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISY 284
Query: 332 NVILGGLCKDGK 343
+ ++ G C+ G+
Sbjct: 285 STVVNGYCRFGE 296
>sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150
OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1
Length = 551
Score = 121 bits (303), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 145/297 (48%), Gaps = 6/297 (2%)
Query: 50 YDLIITKLGRAKMFDEMQQIL-HQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDE 108
Y I +L AK F + ++L +Q K D + E ++ YG + + E A ++FDE
Sbjct: 90 YSAFIRRLREAKKFSTIDEVLQYQKKFDD--IKSEDFVIRIMLLYGYSGMAEHAHKLFDE 147
Query: 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKY-VSPDACSYNILIHGCVVSR 166
M N + TVK FN LL+ + KLD MK ++ EK ++PD +YN +I
Sbjct: 148 MPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKG 207
Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226
++D +F+E+ K +P L++F TL+ E ++ D+M+ N+ P+ + +
Sbjct: 208 SMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRI-WDLMKSKNLSPNIRSY 266
Query: 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286
S ++GL + + AL + + M + I D Y++LI+A E EMKE
Sbjct: 267 NSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKE 326
Query: 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
+G P++VTY LI CK+ D + A + +E + P Y ++ L GK
Sbjct: 327 KGLTPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNMYKPVVERLMGAGK 383
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 112/245 (45%), Gaps = 18/245 (7%)
Query: 50 YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109
++ +++ +K DE + +L I P + + +I R ++ L +F+E+
Sbjct: 160 FNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEEL 219
Query: 110 SSFNVQMTVKFFNTLLNP---KLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSR 166
+ + FNTLL + + DR+ +L + K +SP+ SYN + G ++
Sbjct: 220 EKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMK--SKNLSPNIRSYNSRVRGLTRNK 277
Query: 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN------VK 220
+ DA + D M + P + T+ LI RVD L E++M+ YN +
Sbjct: 278 KFTDALNLIDVMKTEGISPDVHTYNALITAY----RVDNNL---EEVMKCYNEMKEKGLT 330
Query: 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280
PD + LI LC G+L A+ V EE ++ K+ +Y ++ L AG+ +E +
Sbjct: 331 PDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNMYKPVVERLMGAGKIDEATQL 390
Query: 281 LKEMK 285
+K K
Sbjct: 391 VKNGK 395
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 133/280 (47%), Gaps = 41/280 (14%)
Query: 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP----DACSYN 156
+AL+++ + + + + N LL+ GKLD E F+I ++ + D SYN
Sbjct: 501 KALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLD---EAFRIQKEILGRGCVMDRVSYN 557
Query: 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR- 215
LI GC ++L++A+ DEMVKR L+P T+ LI GL +V+EA++ +D R
Sbjct: 558 TLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRN 617
Query: 216 -----VY----------------------------NVKPDGQVFASLIKGLCAVGELSLA 242
VY NV+P+ V+ LI+ C G LS+A
Sbjct: 618 GMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMA 677
Query: 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302
L ++E+M I ++ Y+SLI + R E + +EM+ G +PN Y ALI G
Sbjct: 678 LELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDG 737
Query: 303 FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342
+ K +L EM K N I+Y V++GG +DG
Sbjct: 738 YGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDG 777
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 128/250 (51%), Gaps = 12/250 (4%)
Query: 99 LERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG--KLDRMKELFQIME----KYVSPDA 152
L+ A DEM ++ ++ L+ CG +++++E Q + + PD
Sbjct: 569 LDEAFMFLDEMVKRGLKPDNYTYSILI-----CGLFNMNKVEEAIQFWDDCKRNGMLPDV 623
Query: 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212
+Y+++I GC + R E+ + FDEM+ + +QP V + LI C R+ AL+L+ED
Sbjct: 624 YTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELRED 683
Query: 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272
M+ + P+ + SLIKG+ + + A + EEM + +E + Y++LI K G
Sbjct: 684 -MKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLG 742
Query: 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYN 332
+ + +L+EM + PN +TY +I G+ ++ + A +L+EM +KG + I+Y
Sbjct: 743 QMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYK 802
Query: 333 VILGGLCKDG 342
+ G K G
Sbjct: 803 EFIYGYLKQG 812
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 151/294 (51%), Gaps = 3/294 (1%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
N++ ++ +I LG +DE ++ + + P I + ++ RA+ + A +
Sbjct: 307 NVVTFNTVIDGLGMCGRYDEAFMFKEKMV-ERGMEPTLITYSILVKGLTRAKRIGDAYFV 365
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM-EKYVSPDACSYNILIHGCVV 164
EM+ V +N L++ + G L++ E+ +M K +S + +YN LI G
Sbjct: 366 LKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCK 425
Query: 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224
+ + ++A ++ EM+ +F ++I LC L D AL+ +++ + N+ P G
Sbjct: 426 NGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEML-LRNMSPGGG 484
Query: 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284
+ +LI GLC G+ S AL + + + +D ++L+ L +AG+ +E I KE+
Sbjct: 485 LLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEI 544
Query: 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338
RGC + V+YN LISG C ++ + AF LDEM +G K + +Y++++ GL
Sbjct: 545 LGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGL 598
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 107/218 (49%), Gaps = 1/218 (0%)
Query: 122 NTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181
N LL + + + E F ++ K VSPD + I+ ++E+A K+F +M +
Sbjct: 243 NILLTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEA 302
Query: 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241
+ P +VTF T+I GL + R DEA KE ++ ++P ++ L+KGL +
Sbjct: 303 GVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVE-RGMEPTLITYSILVKGLTRAKRIGD 361
Query: 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301
A V +EM + + +Y++LI + +AG N+ I M +G S TYN LI
Sbjct: 362 AYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIK 421
Query: 302 GFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339
G+CK + A +L EM G N S+ ++ LC
Sbjct: 422 GYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLC 459
Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 147/336 (43%), Gaps = 42/336 (12%)
Query: 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQM 105
L+ Y +++ L RAK + +L ++ P I++ N+I + A L +A+++
Sbjct: 342 TLITYSILVKGLTRAKRIGDAYFVLKEMTKKG-FPPNVIVYNNLIDSFIEAGSLNKAIEI 400
Query: 106 FDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF-QIMEKYVSPDACSYNILIHGCVV 164
D M S + +T +NTL+ G+ D + L +++ + + S+ +I C++
Sbjct: 401 KDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVI--CLL 458
Query: 165 SRRL--EDAWKVFDEMVKRRLQP------TLV---------------------------- 188
L + A + EM+ R + P TL+
Sbjct: 459 CSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDT 518
Query: 189 -TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247
T L++GLC ++DEA +++++I+ V D + +LI G C +L A +
Sbjct: 519 RTSNALLHGLCEAGKLDEAFRIQKEILGRGCVM-DRVSYNTLISGCCGKKKLDEAFMFLD 577
Query: 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307
EMV+ ++ D YS LI LF + E + K G P+ TY+ +I G CK E
Sbjct: 578 EMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAE 637
Query: 308 DFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343
E DEM K + N + YN ++ C+ G+
Sbjct: 638 RTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGR 673
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 92/194 (47%), Gaps = 2/194 (1%)
Query: 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209
P + NIL+ V + + + FD +V + + P + F T I C +V+EA+KL
Sbjct: 237 PSKTTCNILLTSLVRANEFQKCCEAFD-VVCKGVSPDVYLFTTAINAFCKGGKVEEAVKL 295
Query: 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269
M V P+ F ++I GL G A KE+MV +E YS L+ L
Sbjct: 296 FSK-MEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLT 354
Query: 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329
+A R + +LKEM ++G PN + YN LI F + A I D M KG
Sbjct: 355 RAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSS 414
Query: 330 SYNVILGGLCKDGK 343
+YN ++ G CK+G+
Sbjct: 415 TYNTLIKGYCKNGQ 428
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,803,597
Number of Sequences: 539616
Number of extensions: 5301833
Number of successful extensions: 20017
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 132
Number of HSP's that attempted gapping in prelim test: 12852
Number of HSP's gapped (non-prelim): 2767
length of query: 344
length of database: 191,569,459
effective HSP length: 118
effective length of query: 226
effective length of database: 127,894,771
effective search space: 28904218246
effective search space used: 28904218246
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)