Query 038490
Match_columns 344
No_of_seqs 559 out of 1835
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 11:34:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.4E-56 5.2E-61 404.9 37.5 330 3-344 438-770 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.2E-54 2.5E-59 394.0 37.9 325 3-339 473-800 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 2.9E-52 6.3E-57 374.8 30.6 320 2-344 158-478 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 1.2E-50 2.5E-55 372.6 34.1 324 2-344 222-641 (857)
5 PLN03081 pentatricopeptide (PP 100.0 2.4E-49 5.3E-54 356.0 29.9 318 3-343 190-509 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 3.3E-49 7E-54 363.1 31.0 318 4-344 123-440 (857)
7 PRK11788 tetratricopeptide rep 100.0 2E-25 4.4E-30 189.2 29.1 304 8-329 41-354 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 3.3E-24 7.2E-29 201.0 36.1 317 6-344 571-887 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 3.5E-23 7.5E-28 194.2 35.9 314 8-342 437-750 (899)
10 PRK11788 tetratricopeptide rep 99.9 2.4E-22 5.1E-27 170.5 33.5 283 50-340 38-327 (389)
11 PRK15174 Vi polysaccharide exp 99.9 1.1E-20 2.3E-25 168.3 34.5 315 8-343 48-367 (656)
12 PRK15174 Vi polysaccharide exp 99.9 2.1E-20 4.5E-25 166.5 35.0 300 2-322 76-381 (656)
13 TIGR00990 3a0801s09 mitochondr 99.9 1.8E-18 4E-23 154.4 35.0 318 7-343 132-557 (615)
14 PRK11447 cellulose synthase su 99.9 4.9E-18 1.1E-22 161.2 35.5 300 8-322 275-700 (1157)
15 TIGR00990 3a0801s09 mitochondr 99.9 6.1E-18 1.3E-22 151.1 32.6 234 84-322 332-571 (615)
16 KOG4626 O-linked N-acetylgluco 99.8 1.2E-18 2.5E-23 144.4 21.3 296 4-320 118-415 (966)
17 PRK11447 cellulose synthase su 99.8 3.8E-17 8.3E-22 155.2 33.9 297 8-321 357-739 (1157)
18 KOG4626 O-linked N-acetylgluco 99.8 3.2E-18 7E-23 141.7 22.4 281 46-337 217-499 (966)
19 PRK10049 pgaA outer membrane p 99.8 1.7E-16 3.7E-21 144.5 34.6 320 5-343 52-442 (765)
20 PRK10049 pgaA outer membrane p 99.8 9.8E-16 2.1E-20 139.6 32.5 319 8-343 21-408 (765)
21 PF13429 TPR_15: Tetratricopep 99.8 1.6E-18 3.5E-23 139.8 12.2 262 52-320 13-275 (280)
22 PRK10747 putative protoheme IX 99.8 2.3E-15 4.9E-20 127.0 30.1 285 13-321 95-389 (398)
23 PF13429 TPR_15: Tetratricopep 99.8 4.1E-18 8.9E-23 137.4 12.6 250 88-343 13-263 (280)
24 TIGR00540 hemY_coli hemY prote 99.8 2.7E-15 5.9E-20 127.2 30.1 294 9-321 91-398 (409)
25 PRK14574 hmsH outer membrane p 99.8 9.5E-15 2E-19 131.4 34.5 180 161-343 301-499 (822)
26 PRK09782 bacteriophage N4 rece 99.8 1.2E-14 2.6E-19 133.3 34.7 300 5-322 379-706 (987)
27 PRK09782 bacteriophage N4 rece 99.8 5.8E-15 1.3E-19 135.4 32.6 263 46-321 476-739 (987)
28 COG2956 Predicted N-acetylgluc 99.8 2.7E-15 5.9E-20 115.1 25.0 292 13-322 46-347 (389)
29 PRK10747 putative protoheme IX 99.7 2.1E-14 4.6E-19 121.1 30.8 270 60-343 97-376 (398)
30 PRK14574 hmsH outer membrane p 99.7 8.7E-14 1.9E-18 125.3 34.7 159 8-181 40-198 (822)
31 TIGR00540 hemY_coli hemY prote 99.7 6.3E-14 1.4E-18 118.9 31.5 282 58-343 95-385 (409)
32 COG2956 Predicted N-acetylgluc 99.7 1.1E-13 2.4E-18 106.4 28.5 274 58-339 46-326 (389)
33 KOG1126 DNA-binding cell divis 99.7 7.3E-15 1.6E-19 123.0 22.9 285 16-323 333-621 (638)
34 KOG1126 DNA-binding cell divis 99.7 1.7E-14 3.6E-19 120.9 22.3 270 61-343 333-606 (638)
35 COG3071 HemY Uncharacterized e 99.7 1.3E-12 2.8E-17 103.5 28.7 285 15-321 97-389 (400)
36 KOG4422 Uncharacterized conser 99.7 1.2E-12 2.6E-17 104.6 27.9 288 44-336 204-566 (625)
37 KOG4422 Uncharacterized conser 99.7 9.5E-13 2.1E-17 105.2 27.1 307 2-324 207-592 (625)
38 COG3071 HemY Uncharacterized e 99.7 3.1E-12 6.7E-17 101.4 29.6 273 60-343 97-376 (400)
39 KOG2076 RNA polymerase III tra 99.6 1.4E-12 3.1E-17 113.0 28.5 319 10-343 147-541 (895)
40 PRK12370 invasion protein regu 99.6 2.2E-12 4.8E-17 113.7 29.8 266 46-323 255-536 (553)
41 TIGR02521 type_IV_pilW type IV 99.6 7.6E-13 1.7E-17 104.1 24.4 200 83-320 31-230 (234)
42 KOG1155 Anaphase-promoting com 99.6 2.3E-12 5E-17 103.9 26.2 289 8-321 170-494 (559)
43 KOG2002 TPR-containing nuclear 99.6 4.2E-13 9.1E-18 117.1 23.8 231 112-344 446-732 (1018)
44 KOG1155 Anaphase-promoting com 99.6 3.6E-12 7.7E-17 102.8 26.2 288 43-340 258-552 (559)
45 PRK12370 invasion protein regu 99.6 5.2E-13 1.1E-17 117.6 23.8 250 16-287 275-535 (553)
46 TIGR02521 type_IV_pilW type IV 99.6 2.5E-12 5.3E-17 101.2 25.1 201 45-251 29-231 (234)
47 KOG2076 RNA polymerase III tra 99.6 9.3E-12 2E-16 108.1 29.6 296 43-343 135-498 (895)
48 KOG1129 TPR repeat-containing 99.6 7.5E-13 1.6E-17 102.2 18.4 228 88-321 228-457 (478)
49 PF12569 NARP1: NMDA receptor- 99.6 3.1E-11 6.7E-16 103.3 29.7 269 49-326 6-295 (517)
50 KOG0495 HAT repeat protein [RN 99.5 1.4E-10 3E-15 97.8 30.7 317 7-343 521-866 (913)
51 KOG2003 TPR repeat-containing 99.5 8.4E-12 1.8E-16 100.8 22.6 278 56-342 428-708 (840)
52 PF13041 PPR_2: PPR repeat fam 99.5 3.4E-14 7.4E-19 81.5 6.2 50 291-340 1-50 (50)
53 KOG1173 Anaphase-promoting com 99.5 3.9E-11 8.4E-16 99.3 25.4 292 40-340 237-534 (611)
54 KOG2002 TPR-containing nuclear 99.5 2.5E-11 5.4E-16 106.4 25.4 286 45-334 450-757 (1018)
55 KOG1173 Anaphase-promoting com 99.5 3.4E-11 7.5E-16 99.6 24.3 279 8-304 250-533 (611)
56 KOG4318 Bicoid mRNA stability 99.5 3.3E-12 7.1E-17 110.7 19.0 241 78-342 20-285 (1088)
57 PF12569 NARP1: NMDA receptor- 99.5 8.1E-11 1.8E-15 100.7 26.8 294 6-320 8-332 (517)
58 COG3063 PilF Tfp pilus assembl 99.5 9.1E-11 2E-15 86.5 23.0 210 120-334 37-246 (250)
59 KOG2003 TPR repeat-containing 99.5 2.3E-11 4.9E-16 98.3 21.7 281 9-308 426-709 (840)
60 KOG0495 HAT repeat protein [RN 99.5 5.7E-10 1.2E-14 94.2 30.2 281 47-337 516-796 (913)
61 KOG1129 TPR repeat-containing 99.5 7.5E-12 1.6E-16 96.8 17.6 230 51-287 227-458 (478)
62 KOG1174 Anaphase-promoting com 99.5 4.1E-10 8.9E-15 90.0 27.2 291 13-322 207-500 (564)
63 KOG1840 Kinesin light chain [C 99.4 8.7E-11 1.9E-15 99.5 23.4 238 83-320 199-477 (508)
64 KOG1915 Cell cycle control pro 99.4 1.7E-09 3.8E-14 88.0 29.0 299 15-335 154-547 (677)
65 PF13041 PPR_2: PPR repeat fam 99.4 2.8E-13 6.1E-18 77.7 5.5 49 256-304 1-49 (50)
66 KOG0547 Translocase of outer m 99.4 1.1E-10 2.3E-15 95.1 21.9 225 56-286 335-565 (606)
67 PRK11189 lipoprotein NlpI; Pro 99.4 2.7E-10 5.8E-15 92.4 24.1 219 61-288 40-266 (296)
68 KOG0547 Translocase of outer m 99.4 5.5E-10 1.2E-14 91.1 22.9 223 93-321 336-565 (606)
69 PRK11189 lipoprotein NlpI; Pro 99.4 2.1E-09 4.4E-14 87.2 26.2 227 97-333 40-275 (296)
70 COG3063 PilF Tfp pilus assembl 99.4 2.5E-09 5.5E-14 79.0 23.5 198 86-287 38-236 (250)
71 KOG1174 Anaphase-promoting com 99.3 1.1E-09 2.4E-14 87.6 21.8 265 6-290 236-503 (564)
72 KOG1915 Cell cycle control pro 99.3 1.8E-08 3.9E-13 82.3 28.0 304 14-338 85-410 (677)
73 cd05804 StaR_like StaR_like; a 99.3 6.2E-09 1.3E-13 87.4 26.8 307 4-321 8-335 (355)
74 KOG1840 Kinesin light chain [C 99.3 1.8E-09 3.9E-14 91.6 22.2 240 46-285 198-477 (508)
75 cd05804 StaR_like StaR_like; a 99.3 7.2E-08 1.6E-12 81.0 31.4 273 46-321 5-292 (355)
76 KOG4318 Bicoid mRNA stability 99.2 3E-09 6.6E-14 92.9 19.2 245 41-308 19-286 (1088)
77 KOG1070 rRNA processing protei 99.2 2.5E-08 5.4E-13 91.3 25.2 237 80-319 1455-1697(1710)
78 KOG0624 dsRNA-activated protei 99.2 6.1E-08 1.3E-12 76.1 23.9 297 6-322 42-370 (504)
79 KOG1156 N-terminal acetyltrans 99.2 3.5E-07 7.6E-12 77.7 28.5 178 1-194 40-259 (700)
80 PF04733 Coatomer_E: Coatomer 99.2 2.7E-09 6E-14 85.3 15.6 247 14-287 13-265 (290)
81 PF04733 Coatomer_E: Coatomer 99.1 1E-08 2.2E-13 82.1 18.5 251 54-322 8-265 (290)
82 KOG1125 TPR repeat-containing 99.1 1.5E-08 3.3E-13 84.6 18.3 223 92-320 294-525 (579)
83 KOG4162 Predicted calmodulin-b 99.1 6.8E-07 1.5E-11 77.5 28.1 201 5-216 326-542 (799)
84 PLN02789 farnesyltranstransfer 99.1 6E-07 1.3E-11 73.0 25.7 215 49-270 39-267 (320)
85 KOG2047 mRNA splicing factor [ 99.1 1.1E-06 2.3E-11 74.9 27.2 171 154-326 389-582 (835)
86 KOG1070 rRNA processing protei 99.1 1.9E-07 4.1E-12 85.7 24.4 235 44-284 1455-1697(1710)
87 PLN02789 farnesyltranstransfer 99.1 5.1E-07 1.1E-11 73.4 24.7 220 95-320 49-300 (320)
88 TIGR03302 OM_YfiO outer membra 99.0 1.5E-07 3.2E-12 74.2 20.5 59 229-287 172-232 (235)
89 KOG4340 Uncharacterized conser 99.0 1.2E-07 2.6E-12 73.1 18.8 281 50-341 13-323 (459)
90 KOG1125 TPR repeat-containing 99.0 8.5E-08 1.8E-12 80.3 19.3 254 53-314 291-563 (579)
91 KOG1128 Uncharacterized conser 99.0 9.7E-08 2.1E-12 82.1 19.8 235 4-270 400-635 (777)
92 KOG1128 Uncharacterized conser 99.0 8.1E-08 1.7E-12 82.6 18.6 221 80-321 395-615 (777)
93 KOG0548 Molecular co-chaperone 99.0 2.1E-06 4.5E-11 71.6 25.9 310 8-338 8-469 (539)
94 PRK10370 formate-dependent nit 99.0 2.6E-07 5.7E-12 69.9 19.4 119 200-322 52-173 (198)
95 KOG0624 dsRNA-activated protei 99.0 2.1E-06 4.6E-11 67.8 24.0 266 4-288 74-371 (504)
96 KOG2047 mRNA splicing factor [ 99.0 7.7E-06 1.7E-10 69.9 28.8 270 47-324 102-508 (835)
97 TIGR03302 OM_YfiO outer membra 99.0 2.6E-07 5.5E-12 72.8 19.4 189 44-253 30-233 (235)
98 KOG2376 Signal recognition par 99.0 1.5E-05 3.3E-10 67.4 30.2 316 9-341 19-505 (652)
99 KOG1156 N-terminal acetyltrans 98.9 1.6E-06 3.5E-11 73.8 23.5 306 9-334 14-329 (700)
100 COG5010 TadD Flp pilus assembl 98.9 9.7E-08 2.1E-12 72.3 14.4 162 46-212 66-227 (257)
101 KOG3081 Vesicle coat complex C 98.9 4.9E-06 1.1E-10 63.4 23.2 173 104-287 94-271 (299)
102 COG5010 TadD Flp pilus assembl 98.9 4.2E-07 9.2E-12 68.9 17.5 165 82-251 66-230 (257)
103 PF12854 PPR_1: PPR repeat 98.9 2.1E-09 4.5E-14 55.4 3.7 32 288-319 2-33 (34)
104 PRK15179 Vi polysaccharide bio 98.9 2.1E-06 4.5E-11 77.0 23.8 233 84-340 29-267 (694)
105 KOG4340 Uncharacterized conser 98.9 9.2E-07 2E-11 68.4 18.0 291 5-318 13-335 (459)
106 PRK14720 transcript cleavage f 98.9 2.5E-06 5.5E-11 77.5 23.6 234 44-304 28-268 (906)
107 PRK10370 formate-dependent nit 98.9 3.4E-07 7.5E-12 69.3 15.7 156 54-226 23-181 (198)
108 PRK14720 transcript cleavage f 98.8 3E-06 6.5E-11 77.0 23.8 176 88-269 88-268 (906)
109 KOG3785 Uncharacterized conser 98.8 2.4E-06 5.2E-11 67.7 20.2 98 229-332 399-498 (557)
110 PRK15179 Vi polysaccharide bio 98.8 1.6E-06 3.6E-11 77.7 21.9 135 80-216 83-217 (694)
111 KOG4162 Predicted calmodulin-b 98.8 1.6E-05 3.4E-10 69.4 26.3 253 63-321 460-782 (799)
112 PRK04841 transcriptional regul 98.8 1E-05 2.2E-10 76.8 27.6 311 7-322 414-760 (903)
113 PRK15359 type III secretion sy 98.8 7.6E-07 1.6E-11 63.8 15.1 95 86-181 27-121 (144)
114 PF12854 PPR_1: PPR repeat 98.8 5.3E-09 1.1E-13 53.8 2.9 32 253-284 2-33 (34)
115 PRK15359 type III secretion sy 98.8 5.5E-07 1.2E-11 64.5 14.3 113 47-162 24-136 (144)
116 KOG0548 Molecular co-chaperone 98.8 2.9E-05 6.3E-10 65.1 25.0 283 54-344 9-408 (539)
117 KOG3081 Vesicle coat complex C 98.8 1.1E-05 2.5E-10 61.4 20.5 250 54-322 15-271 (299)
118 KOG3785 Uncharacterized conser 98.7 4E-06 8.7E-11 66.5 18.0 97 193-296 399-497 (557)
119 KOG0985 Vesicle coat protein c 98.7 1.8E-05 4E-10 71.2 23.6 175 132-342 1089-1263(1666)
120 TIGR02552 LcrH_SycD type III s 98.7 1.2E-06 2.5E-11 62.4 13.9 97 84-181 18-114 (135)
121 PRK04841 transcriptional regul 98.7 5.9E-05 1.3E-09 71.8 28.6 24 298-321 696-719 (903)
122 KOG3617 WD40 and TPR repeat-co 98.7 1.7E-05 3.6E-10 69.9 21.7 169 6-211 804-991 (1416)
123 KOG2376 Signal recognition par 98.7 8.7E-05 1.9E-09 63.0 25.1 199 49-254 14-255 (652)
124 KOG3060 Uncharacterized conser 98.7 5.9E-05 1.3E-09 57.3 21.7 188 61-252 26-220 (289)
125 KOG2053 Mitochondrial inherita 98.7 0.00017 3.6E-09 64.4 27.7 229 12-255 19-258 (932)
126 KOG3060 Uncharacterized conser 98.6 7.8E-05 1.7E-09 56.6 21.9 189 97-289 26-222 (289)
127 TIGR02552 LcrH_SycD type III s 98.6 2.9E-06 6.3E-11 60.4 14.2 99 117-216 16-114 (135)
128 KOG1914 mRNA cleavage and poly 98.6 0.00022 4.7E-09 60.2 28.1 117 225-343 368-487 (656)
129 KOG3616 Selective LIM binding 98.6 2.3E-06 5E-11 74.2 14.7 169 89-282 738-906 (1636)
130 KOG3617 WD40 and TPR repeat-co 98.6 9.1E-06 2E-10 71.5 18.1 231 11-285 737-994 (1416)
131 COG4783 Putative Zn-dependent 98.6 3E-05 6.5E-10 64.3 20.1 186 42-252 269-454 (484)
132 COG4783 Putative Zn-dependent 98.6 7.6E-05 1.6E-09 62.0 22.0 184 62-252 252-437 (484)
133 KOG3616 Selective LIM binding 98.6 1.8E-05 3.9E-10 68.9 18.9 170 125-319 739-908 (1636)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 3.3E-06 7.2E-11 70.2 13.8 123 85-212 171-293 (395)
135 KOG2053 Mitochondrial inherita 98.5 0.00034 7.4E-09 62.5 26.5 228 56-288 18-256 (932)
136 KOG1127 TPR repeat-containing 98.5 1.6E-05 3.4E-10 71.4 17.4 163 5-179 495-657 (1238)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 7.9E-06 1.7E-10 68.0 14.4 122 156-284 173-294 (395)
138 TIGR00756 PPR pentatricopeptid 98.5 3.2E-07 7E-12 47.9 4.2 33 295-327 2-34 (35)
139 PF13812 PPR_3: Pentatricopept 98.4 4.4E-07 9.5E-12 47.0 4.1 33 294-326 2-34 (34)
140 KOG0985 Vesicle coat protein c 98.4 0.00065 1.4E-08 61.8 25.3 161 131-320 1061-1221(1666)
141 TIGR00756 PPR pentatricopeptid 98.4 7E-07 1.5E-11 46.6 4.2 33 154-186 2-34 (35)
142 PF09976 TPR_21: Tetratricopep 98.4 2.5E-05 5.4E-10 56.2 13.5 127 190-319 15-144 (145)
143 PF09976 TPR_21: Tetratricopep 98.4 3.1E-05 6.7E-10 55.7 14.0 125 49-177 14-143 (145)
144 PF10037 MRP-S27: Mitochondria 98.3 6.6E-06 1.4E-10 68.8 10.8 126 181-306 60-186 (429)
145 PF13812 PPR_3: Pentatricopept 98.3 1E-06 2.3E-11 45.6 4.0 33 153-185 2-34 (34)
146 cd00189 TPR Tetratricopeptide 98.3 1.8E-05 3.9E-10 52.1 11.0 91 51-144 4-94 (100)
147 KOG1914 mRNA cleavage and poly 98.3 0.0016 3.5E-08 55.2 27.6 131 188-321 367-500 (656)
148 PF10037 MRP-S27: Mitochondria 98.3 3.9E-05 8.4E-10 64.3 14.0 120 115-235 63-185 (429)
149 cd00189 TPR Tetratricopeptide 98.3 2.6E-05 5.6E-10 51.3 11.0 96 85-181 2-97 (100)
150 PF08579 RPM2: Mitochondrial r 98.3 2.6E-05 5.6E-10 51.3 9.9 76 265-340 32-116 (120)
151 PF05843 Suf: Suppressor of fo 98.2 0.00013 2.9E-09 58.7 15.4 129 49-180 3-135 (280)
152 TIGR02795 tol_pal_ybgF tol-pal 98.2 8.7E-05 1.9E-09 51.3 12.6 102 50-151 5-109 (119)
153 TIGR02795 tol_pal_ybgF tol-pal 98.2 0.00012 2.6E-09 50.6 13.0 95 86-181 5-105 (119)
154 KOG1127 TPR repeat-containing 98.2 0.00047 1E-08 62.5 18.7 180 63-251 474-658 (1238)
155 PRK15363 pathogenicity island 98.2 7.6E-05 1.6E-09 53.0 11.3 97 84-181 36-132 (157)
156 PF05843 Suf: Suppressor of fo 98.2 5.7E-05 1.2E-09 60.8 12.3 131 84-216 2-136 (280)
157 PF12895 Apc3: Anaphase-promot 98.1 8.3E-06 1.8E-10 52.5 6.1 82 60-143 2-83 (84)
158 PRK02603 photosystem I assembl 98.1 0.00019 4.2E-09 53.3 14.2 92 83-174 35-128 (172)
159 PRK02603 photosystem I assembl 98.1 0.0002 4.3E-09 53.3 14.2 87 189-276 37-124 (172)
160 PRK15363 pathogenicity island 98.1 0.00031 6.8E-09 49.9 14.1 102 119-221 36-137 (157)
161 PF12895 Apc3: Anaphase-promot 98.1 5.2E-06 1.1E-10 53.4 5.0 81 96-177 2-83 (84)
162 PLN03088 SGT1, suppressor of 98.1 0.00011 2.3E-09 61.4 13.9 97 53-152 8-104 (356)
163 CHL00033 ycf3 photosystem I as 98.1 8.3E-05 1.8E-09 55.1 11.8 93 225-318 37-138 (168)
164 PF01535 PPR: PPR repeat; Int 98.1 4.6E-06 9.9E-11 42.0 3.6 30 295-324 2-31 (31)
165 PLN03088 SGT1, suppressor of 98.1 0.00011 2.3E-09 61.5 13.6 101 194-299 9-109 (356)
166 PF08579 RPM2: Mitochondrial r 98.1 9.3E-05 2E-09 48.8 9.9 78 228-305 30-116 (120)
167 CHL00033 ycf3 photosystem I as 98.1 0.00017 3.7E-09 53.4 12.8 114 63-176 15-137 (168)
168 PF01535 PPR: PPR repeat; Int 98.1 7.3E-06 1.6E-10 41.3 3.5 29 154-182 2-30 (31)
169 PRK10866 outer membrane biogen 98.0 0.0036 7.8E-08 49.2 21.1 56 264-319 181-238 (243)
170 PF06239 ECSIT: Evolutionarily 98.0 0.00012 2.6E-09 54.6 10.2 88 220-307 44-152 (228)
171 COG3898 Uncharacterized membra 98.0 0.0058 1.3E-07 49.9 23.1 287 10-322 92-392 (531)
172 KOG0553 TPR repeat-containing 98.0 0.00012 2.7E-09 57.1 10.5 100 196-300 90-189 (304)
173 PRK10153 DNA-binding transcrip 98.0 0.0009 1.9E-08 58.6 16.8 64 187-253 420-483 (517)
174 PF14938 SNAP: Soluble NSF att 98.0 0.0011 2.4E-08 53.7 16.2 132 190-321 117-265 (282)
175 COG4700 Uncharacterized protei 97.9 0.0034 7.3E-08 45.7 19.1 126 115-245 86-215 (251)
176 PRK10153 DNA-binding transcrip 97.9 0.0015 3.2E-08 57.3 17.2 134 150-287 335-482 (517)
177 KOG0550 Molecular chaperone (D 97.9 0.0028 6E-08 52.0 17.1 276 50-338 52-367 (486)
178 PRK10866 outer membrane biogen 97.9 0.0066 1.4E-07 47.8 22.1 58 53-112 38-98 (243)
179 COG4235 Cytochrome c biogenesi 97.9 0.0019 4E-08 50.9 15.7 113 220-336 153-268 (287)
180 PF12688 TPR_5: Tetratrico pep 97.9 0.0014 2.9E-08 45.0 13.2 55 92-146 10-66 (120)
181 KOG2796 Uncharacterized conser 97.8 0.0029 6.3E-08 48.7 15.4 128 53-181 183-315 (366)
182 PF14938 SNAP: Soluble NSF att 97.8 0.0019 4.1E-08 52.3 15.5 206 47-283 35-259 (282)
183 PF04840 Vps16_C: Vps16, C-ter 97.8 0.013 2.8E-07 48.0 21.4 110 187-317 177-286 (319)
184 PF13432 TPR_16: Tetratricopep 97.8 0.00019 4.2E-09 43.4 7.0 55 55-111 5-59 (65)
185 PF13525 YfiO: Outer membrane 97.8 0.0091 2E-07 45.7 17.6 178 47-242 5-197 (203)
186 PF14559 TPR_19: Tetratricopep 97.8 0.00014 3E-09 44.5 6.2 52 59-112 3-54 (68)
187 PF14559 TPR_19: Tetratricopep 97.7 9.2E-05 2E-09 45.3 5.1 50 96-146 4-53 (68)
188 COG4235 Cytochrome c biogenesi 97.7 0.0029 6.3E-08 49.9 14.2 106 109-216 148-256 (287)
189 KOG0553 TPR repeat-containing 97.7 0.00079 1.7E-08 52.7 10.9 102 93-197 91-192 (304)
190 PF12688 TPR_5: Tetratrico pep 97.7 0.0032 6.9E-08 43.2 12.8 94 50-145 4-102 (120)
191 PF13414 TPR_11: TPR repeat; P 97.7 0.0003 6.5E-09 43.2 7.2 64 46-111 2-66 (69)
192 PF06239 ECSIT: Evolutionarily 97.7 0.0018 3.9E-08 48.5 12.1 116 150-285 45-166 (228)
193 PF13525 YfiO: Outer membrane 97.7 0.013 2.9E-07 44.8 17.4 45 264-310 147-195 (203)
194 PF13432 TPR_16: Tetratricopep 97.7 0.00018 3.9E-09 43.6 5.8 54 92-146 6-59 (65)
195 KOG2796 Uncharacterized conser 97.6 0.0033 7.1E-08 48.4 12.7 140 155-298 180-324 (366)
196 PF13414 TPR_11: TPR repeat; P 97.6 0.00096 2.1E-08 40.9 7.9 62 188-251 4-66 (69)
197 KOG0550 Molecular chaperone (D 97.5 0.017 3.7E-07 47.6 16.4 263 8-287 55-350 (486)
198 KOG2041 WD40 repeat protein [G 97.5 0.013 2.8E-07 51.7 16.4 239 45-320 690-950 (1189)
199 COG3898 Uncharacterized membra 97.5 0.037 8E-07 45.5 27.3 272 49-336 84-370 (531)
200 PF03704 BTAD: Bacterial trans 97.5 0.0026 5.7E-08 45.8 11.0 57 262-319 66-122 (146)
201 KOG1130 Predicted G-alpha GTPa 97.4 0.00093 2E-08 54.7 8.3 271 9-286 24-343 (639)
202 PF03704 BTAD: Bacterial trans 97.4 0.00095 2.1E-08 48.1 7.5 71 120-190 64-139 (146)
203 PRK10803 tol-pal system protei 97.4 0.0067 1.5E-07 48.2 12.6 62 226-287 183-246 (263)
204 KOG1130 Predicted G-alpha GTPa 97.4 0.0025 5.5E-08 52.3 9.9 264 55-320 25-342 (639)
205 COG4700 Uncharacterized protei 97.4 0.031 6.8E-07 40.9 17.6 128 184-314 86-214 (251)
206 PF12921 ATP13: Mitochondrial 97.4 0.0046 1E-07 42.8 10.0 53 182-234 47-99 (126)
207 PF13371 TPR_9: Tetratricopept 97.4 0.0017 3.7E-08 40.3 7.3 53 128-180 5-57 (73)
208 PF04840 Vps16_C: Vps16, C-ter 97.3 0.063 1.4E-06 44.1 22.7 85 224-318 178-262 (319)
209 PRK15331 chaperone protein Sic 97.3 0.0061 1.3E-07 43.8 10.5 92 89-181 43-134 (165)
210 PRK10803 tol-pal system protei 97.3 0.0059 1.3E-07 48.5 11.7 97 120-216 145-246 (263)
211 PF13371 TPR_9: Tetratricopept 97.3 0.002 4.4E-08 39.9 7.1 55 56-112 4-58 (73)
212 PF13281 DUF4071: Domain of un 97.2 0.09 1.9E-06 43.8 18.7 166 119-287 142-334 (374)
213 PF08631 SPO22: Meiosis protei 97.2 0.076 1.7E-06 42.9 21.3 168 11-187 2-192 (278)
214 PRK15331 chaperone protein Sic 97.2 0.015 3.3E-07 41.8 11.6 88 196-286 46-133 (165)
215 PF12921 ATP13: Mitochondrial 97.2 0.0089 1.9E-07 41.4 9.9 84 46-129 1-99 (126)
216 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.035 7.7E-07 46.9 14.9 68 42-112 70-141 (453)
217 PF13281 DUF4071: Domain of un 97.1 0.12 2.6E-06 43.0 19.2 169 83-253 141-335 (374)
218 PF04053 Coatomer_WDAD: Coatom 97.1 0.033 7.1E-07 47.9 14.3 154 57-247 271-426 (443)
219 KOG2280 Vacuolar assembly/sort 97.1 0.21 4.6E-06 44.7 20.0 288 5-319 440-770 (829)
220 KOG2041 WD40 repeat protein [G 97.0 0.22 4.8E-06 44.4 22.1 276 15-336 747-1065(1189)
221 PF13424 TPR_12: Tetratricopep 97.0 0.0042 9.1E-08 39.1 6.2 65 47-111 5-74 (78)
222 COG1729 Uncharacterized protei 96.9 0.0072 1.6E-07 47.1 8.4 101 48-151 143-248 (262)
223 KOG2280 Vacuolar assembly/sort 96.9 0.22 4.7E-06 44.7 17.8 111 185-315 682-792 (829)
224 KOG0543 FKBP-type peptidyl-pro 96.9 0.026 5.7E-07 46.5 11.3 94 120-215 259-354 (397)
225 PF13424 TPR_12: Tetratricopep 96.9 0.011 2.4E-07 37.2 7.5 60 190-249 8-72 (78)
226 KOG1538 Uncharacterized conser 96.9 0.3 6.5E-06 43.2 20.3 90 222-322 746-846 (1081)
227 PRK11906 transcriptional regul 96.8 0.26 5.6E-06 42.0 16.8 163 48-212 252-432 (458)
228 PF10300 DUF3808: Protein of u 96.8 0.056 1.2E-06 47.2 13.7 168 2-178 188-373 (468)
229 KOG2610 Uncharacterized conser 96.8 0.18 3.9E-06 40.8 14.8 150 14-177 115-272 (491)
230 KOG3941 Intermediate in Toll s 96.7 0.014 3E-07 45.6 8.3 89 220-308 64-173 (406)
231 KOG0543 FKBP-type peptidyl-pro 96.7 0.057 1.2E-06 44.6 12.2 123 196-321 217-354 (397)
232 PF13512 TPR_18: Tetratricopep 96.7 0.12 2.7E-06 36.3 12.0 55 95-149 22-78 (142)
233 PF10300 DUF3808: Protein of u 96.7 0.19 4.1E-06 44.0 16.0 155 128-285 198-374 (468)
234 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.047 1E-06 46.2 11.4 64 186-252 74-141 (453)
235 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.37 8.1E-06 40.7 19.0 145 153-303 398-545 (660)
236 COG3118 Thioredoxin domain-con 96.5 0.31 6.7E-06 38.8 17.5 146 127-276 143-290 (304)
237 PF07079 DUF1347: Protein of u 96.5 0.44 9.6E-06 40.3 25.4 61 268-335 472-532 (549)
238 PF08631 SPO22: Meiosis protei 96.4 0.4 8.6E-06 38.8 25.5 124 58-181 4-150 (278)
239 COG1729 Uncharacterized protei 96.4 0.1 2.2E-06 40.9 11.0 89 164-252 153-244 (262)
240 COG3118 Thioredoxin domain-con 96.4 0.38 8.3E-06 38.3 17.7 147 91-240 142-289 (304)
241 PF04053 Coatomer_WDAD: Coatom 96.3 0.06 1.3E-06 46.4 10.6 157 10-212 269-427 (443)
242 PF13512 TPR_18: Tetratricopep 96.3 0.19 4.1E-06 35.4 11.2 73 197-269 20-93 (142)
243 KOG2610 Uncharacterized conser 96.3 0.45 9.7E-06 38.6 15.2 151 60-212 116-272 (491)
244 PRK11906 transcriptional regul 96.3 0.47 1E-05 40.5 15.2 149 98-248 273-432 (458)
245 PF07035 Mic1: Colon cancer-as 96.3 0.28 6.1E-06 35.8 14.0 136 172-322 14-149 (167)
246 PF13428 TPR_14: Tetratricopep 96.2 0.022 4.9E-07 31.0 5.2 24 52-75 6-29 (44)
247 PF04184 ST7: ST7 protein; In 96.2 0.69 1.5E-05 39.8 19.6 149 89-251 174-323 (539)
248 KOG3941 Intermediate in Toll s 96.2 0.065 1.4E-06 42.1 9.0 127 184-320 64-216 (406)
249 KOG4555 TPR repeat-containing 96.1 0.15 3.3E-06 35.0 9.6 53 57-111 53-105 (175)
250 COG1747 Uncharacterized N-term 96.1 0.77 1.7E-05 39.6 20.5 183 80-269 63-250 (711)
251 KOG4555 TPR repeat-containing 96.1 0.058 1.2E-06 37.0 7.4 95 8-113 49-145 (175)
252 KOG2114 Vacuolar assembly/sort 96.0 0.73 1.6E-05 42.1 15.8 180 4-212 336-515 (933)
253 COG4105 ComL DNA uptake lipopr 95.9 0.58 1.3E-05 36.5 19.9 58 230-287 174-233 (254)
254 PF13428 TPR_14: Tetratricopep 95.8 0.025 5.3E-07 30.9 4.2 27 86-112 4-30 (44)
255 PF02259 FAT: FAT domain; Int 95.8 0.97 2.1E-05 38.0 18.3 65 222-286 145-212 (352)
256 smart00299 CLH Clathrin heavy 95.8 0.45 9.7E-06 33.8 15.3 43 88-131 12-54 (140)
257 KOG1941 Acetylcholine receptor 95.8 0.4 8.6E-06 39.3 12.0 234 9-250 13-273 (518)
258 COG3629 DnrI DNA-binding trans 95.8 0.18 4E-06 40.1 10.2 77 225-302 155-236 (280)
259 KOG2114 Vacuolar assembly/sort 95.8 0.51 1.1E-05 43.1 13.7 176 50-249 337-516 (933)
260 PF09205 DUF1955: Domain of un 95.7 0.4 8.6E-06 33.2 14.0 139 95-255 14-152 (161)
261 KOG1538 Uncharacterized conser 95.6 0.18 3.9E-06 44.5 10.0 85 119-213 748-843 (1081)
262 COG3629 DnrI DNA-binding trans 95.5 0.21 4.6E-06 39.8 9.7 59 121-179 156-214 (280)
263 COG0457 NrfG FOG: TPR repeat [ 95.5 0.86 1.9E-05 35.2 25.0 224 61-287 37-265 (291)
264 KOG1585 Protein required for f 95.4 0.92 2E-05 35.2 17.5 30 46-75 30-59 (308)
265 smart00299 CLH Clathrin heavy 95.4 0.63 1.4E-05 33.1 16.1 45 50-96 10-54 (140)
266 COG5107 RNA14 Pre-mRNA 3'-end 95.2 1.7 3.6E-05 37.1 20.6 144 187-336 397-543 (660)
267 PF07079 DUF1347: Protein of u 95.2 1.8 3.8E-05 36.9 25.7 258 56-321 15-326 (549)
268 KOG1585 Protein required for f 95.2 1.1 2.5E-05 34.7 14.7 206 84-315 32-249 (308)
269 PF09205 DUF1955: Domain of un 95.0 0.75 1.6E-05 31.9 12.4 62 262-324 90-151 (161)
270 PF00637 Clathrin: Region in C 95.0 0.001 2.3E-08 47.7 -4.1 135 1-167 6-140 (143)
271 COG4105 ComL DNA uptake lipopr 95.0 1.3 2.9E-05 34.6 22.0 182 53-252 40-233 (254)
272 KOG1920 IkappaB kinase complex 94.9 0.41 8.9E-06 45.4 11.0 178 13-212 862-1051(1265)
273 PF13170 DUF4003: Protein of u 94.9 1.7 3.8E-05 35.4 20.8 129 169-299 79-223 (297)
274 PF10602 RPN7: 26S proteasome 94.8 1 2.2E-05 33.6 11.2 63 84-146 37-101 (177)
275 KOG1258 mRNA processing protei 94.6 3.1 6.6E-05 36.8 24.2 92 9-111 86-179 (577)
276 PF10602 RPN7: 26S proteasome 94.5 0.79 1.7E-05 34.1 9.8 96 119-214 37-140 (177)
277 KOG1941 Acetylcholine receptor 94.4 2.4 5.2E-05 35.1 14.0 170 47-216 83-275 (518)
278 PF13929 mRNA_stabil: mRNA sta 94.3 1.7 3.7E-05 34.8 11.7 62 256-317 200-262 (292)
279 PF00637 Clathrin: Region in C 94.3 0.052 1.1E-06 38.8 3.2 53 230-282 14-66 (143)
280 COG0457 NrfG FOG: TPR repeat [ 94.2 2 4.3E-05 33.1 28.1 224 96-322 36-265 (291)
281 COG4785 NlpI Lipoprotein NlpI, 94.2 1.9 4.2E-05 32.9 16.0 184 93-287 75-266 (297)
282 PF04184 ST7: ST7 protein; In 94.2 3.4 7.5E-05 35.8 15.1 61 227-287 263-324 (539)
283 cd00923 Cyt_c_Oxidase_Va Cytoc 94.1 0.43 9.4E-06 30.8 6.5 45 65-110 25-69 (103)
284 PF13176 TPR_7: Tetratricopept 94.1 0.16 3.4E-06 26.2 3.9 24 86-109 2-25 (36)
285 PF13176 TPR_7: Tetratricopept 94.0 0.12 2.7E-06 26.6 3.6 22 156-177 3-24 (36)
286 KOG4570 Uncharacterized conser 94.0 1.7 3.7E-05 35.1 11.0 104 113-217 59-165 (418)
287 PF02284 COX5A: Cytochrome c o 93.9 0.65 1.4E-05 30.4 7.1 44 66-110 29-72 (108)
288 COG2909 MalT ATP-dependent tra 93.8 5.7 0.00012 37.1 23.4 224 95-318 427-684 (894)
289 PF13431 TPR_17: Tetratricopep 93.8 0.1 2.2E-06 26.5 2.8 21 117-137 12-32 (34)
290 KOG4570 Uncharacterized conser 93.6 0.84 1.8E-05 36.8 8.8 100 150-252 62-164 (418)
291 KOG1920 IkappaB kinase complex 93.4 8 0.00017 37.4 16.0 80 230-320 972-1053(1265)
292 KOG0276 Vesicle coat complex C 93.3 2.8 6E-05 37.2 12.0 100 129-249 648-747 (794)
293 COG4649 Uncharacterized protei 93.3 2.4 5.3E-05 31.1 13.3 135 83-218 59-198 (221)
294 cd00923 Cyt_c_Oxidase_Va Cytoc 93.1 0.81 1.7E-05 29.7 6.5 50 238-287 22-71 (103)
295 PF13431 TPR_17: Tetratricopep 93.1 0.1 2.3E-06 26.5 2.2 32 141-172 2-33 (34)
296 COG4649 Uncharacterized protei 93.0 2.6 5.7E-05 30.9 15.0 136 119-256 60-200 (221)
297 TIGR02561 HrpB1_HrpK type III 93.0 2.4 5.2E-05 30.2 11.5 51 131-181 23-73 (153)
298 PF09613 HrpB1_HrpK: Bacterial 92.9 2.6 5.7E-05 30.5 12.7 111 196-313 19-129 (160)
299 PF07035 Mic1: Colon cancer-as 92.7 2.9 6.4E-05 30.6 14.8 134 104-251 15-148 (167)
300 PF09613 HrpB1_HrpK: Bacterial 92.5 3 6.6E-05 30.2 13.7 51 95-146 22-72 (160)
301 PRK15180 Vi polysaccharide bio 92.2 3.2 7E-05 35.7 10.8 120 94-216 300-420 (831)
302 COG4455 ImpE Protein of avirul 92.2 1.1 2.3E-05 34.2 7.2 56 52-109 6-61 (273)
303 PF02284 COX5A: Cytochrome c o 91.9 2.5 5.4E-05 27.8 8.1 45 171-215 29-73 (108)
304 PF07721 TPR_4: Tetratricopept 91.9 0.092 2E-06 24.7 1.0 26 2-27 1-26 (26)
305 TIGR02561 HrpB1_HrpK type III 91.7 3.6 7.8E-05 29.4 12.1 19 128-146 54-72 (153)
306 KOG1550 Extracellular protein 91.7 9.9 0.00022 34.4 16.4 149 134-288 228-394 (552)
307 PF00515 TPR_1: Tetratricopept 91.6 0.43 9.4E-06 23.9 3.5 27 49-75 3-29 (34)
308 PF07719 TPR_2: Tetratricopept 91.0 0.52 1.1E-05 23.5 3.5 27 49-75 3-29 (34)
309 KOG4234 TPR repeat-containing 91.0 4.1 8.9E-05 30.7 9.0 90 197-287 105-197 (271)
310 PF11207 DUF2989: Protein of u 90.9 4.2 9.2E-05 30.7 9.2 22 256-277 176-197 (203)
311 PRK09687 putative lyase; Provi 90.7 7.9 0.00017 31.4 26.0 235 81-340 35-279 (280)
312 PF00515 TPR_1: Tetratricopept 90.6 0.98 2.1E-05 22.6 4.3 23 228-250 6-28 (34)
313 PF13170 DUF4003: Protein of u 90.5 8.5 0.00019 31.5 21.6 128 99-229 78-223 (297)
314 PF13374 TPR_10: Tetratricopep 90.3 0.86 1.9E-05 24.0 4.2 26 85-110 4-29 (42)
315 KOG0276 Vesicle coat complex C 90.0 3.4 7.5E-05 36.6 9.2 131 5-178 617-747 (794)
316 PF13374 TPR_10: Tetratricopep 89.9 1.1 2.4E-05 23.5 4.4 26 225-250 4-29 (42)
317 TIGR03504 FimV_Cterm FimV C-te 89.8 0.91 2E-05 24.7 3.7 24 299-322 5-28 (44)
318 KOG4234 TPR repeat-containing 89.6 7.5 0.00016 29.4 9.5 89 92-181 104-197 (271)
319 KOG1550 Extracellular protein 89.5 16 0.00034 33.1 22.0 279 18-322 228-538 (552)
320 PF07719 TPR_2: Tetratricopept 89.5 1.4 3E-05 21.9 4.3 24 88-111 6-29 (34)
321 PF13174 TPR_6: Tetratricopept 89.5 0.54 1.2E-05 23.2 2.7 23 53-75 6-28 (33)
322 PF08424 NRDE-2: NRDE-2, neces 89.5 11 0.00024 31.3 16.0 24 231-254 162-185 (321)
323 KOG1464 COP9 signalosome, subu 89.0 10 0.00022 30.2 16.1 202 78-279 21-252 (440)
324 PF02259 FAT: FAT domain; Int 88.9 13 0.00028 31.2 21.9 194 53-252 4-213 (352)
325 PF06552 TOM20_plant: Plant sp 88.8 5.5 0.00012 29.5 8.2 28 168-197 96-123 (186)
326 KOG0890 Protein kinase of the 88.4 37 0.00081 36.0 21.6 295 8-322 1389-1731(2382)
327 COG2909 MalT ATP-dependent tra 88.2 23 0.0005 33.4 22.0 195 128-323 425-648 (894)
328 COG4455 ImpE Protein of avirul 88.2 7.3 0.00016 29.9 8.6 59 87-146 5-63 (273)
329 COG1747 Uncharacterized N-term 87.4 19 0.00042 31.6 23.7 179 115-302 63-248 (711)
330 TIGR03504 FimV_Cterm FimV C-te 87.3 1.8 3.9E-05 23.5 3.9 24 158-181 5-28 (44)
331 PF11207 DUF2989: Protein of u 87.3 11 0.00024 28.6 11.5 80 162-243 117-198 (203)
332 PF13762 MNE1: Mitochondrial s 86.5 9.8 0.00021 27.2 10.2 49 292-340 78-127 (145)
333 PF13929 mRNA_stabil: mRNA sta 86.3 16 0.00035 29.5 17.9 118 165-282 141-262 (292)
334 KOG3807 Predicted membrane pro 86.2 18 0.00038 29.8 11.7 60 193-252 281-340 (556)
335 COG3947 Response regulator con 86.1 5.8 0.00013 31.9 7.5 72 154-226 281-356 (361)
336 PF09477 Type_III_YscG: Bacter 85.9 5.2 0.00011 26.7 6.0 82 62-151 21-102 (116)
337 PF13181 TPR_8: Tetratricopept 85.9 2 4.4E-05 21.3 3.6 27 49-75 3-29 (34)
338 PRK15180 Vi polysaccharide bio 85.6 24 0.00052 30.8 15.7 127 53-182 295-421 (831)
339 KOG4648 Uncharacterized conser 85.2 6.3 0.00014 32.5 7.5 90 54-147 104-194 (536)
340 KOG4077 Cytochrome c oxidase, 85.1 6.5 0.00014 27.1 6.4 48 102-149 68-115 (149)
341 COG4785 NlpI Lipoprotein NlpI, 85.0 16 0.00034 28.2 15.1 185 130-324 77-268 (297)
342 PF07575 Nucleopor_Nup85: Nup8 84.6 32 0.00069 31.4 13.1 92 154-250 374-465 (566)
343 KOG1464 COP9 signalosome, subu 84.5 19 0.00041 28.8 18.2 186 59-244 39-252 (440)
344 PF13181 TPR_8: Tetratricopept 84.5 3.5 7.6E-05 20.4 4.3 26 226-251 4-29 (34)
345 KOG4077 Cytochrome c oxidase, 84.5 7.4 0.00016 26.8 6.4 47 241-287 67-113 (149)
346 KOG2066 Vacuolar assembly/sort 84.1 36 0.00079 31.7 21.9 155 8-180 362-533 (846)
347 KOG0687 26S proteasome regulat 83.5 24 0.00051 29.1 14.8 134 183-320 66-208 (393)
348 KOG4648 Uncharacterized conser 83.3 17 0.00037 30.1 9.1 89 126-215 105-193 (536)
349 PF11846 DUF3366: Domain of un 83.2 6.5 0.00014 29.8 6.8 33 80-112 141-173 (193)
350 PRK10941 hypothetical protein; 82.2 23 0.0005 28.6 9.6 78 120-197 183-261 (269)
351 PF11848 DUF3368: Domain of un 81.6 7 0.00015 21.7 4.8 33 304-336 13-45 (48)
352 TIGR02508 type_III_yscG type I 81.6 13 0.00027 24.6 6.8 51 56-113 48-98 (115)
353 PF07163 Pex26: Pex26 protein; 81.4 26 0.00057 28.2 13.4 130 46-175 34-181 (309)
354 KOG4642 Chaperone-dependent E3 81.0 25 0.00054 27.6 9.9 83 57-144 20-104 (284)
355 PF07163 Pex26: Pex26 protein; 80.8 28 0.0006 28.1 13.1 91 120-210 85-181 (309)
356 PF11846 DUF3366: Domain of un 80.7 14 0.00029 28.0 7.8 33 220-252 141-173 (193)
357 PF04097 Nic96: Nup93/Nic96; 80.7 33 0.00071 31.7 11.3 29 84-112 325-356 (613)
358 PF11663 Toxin_YhaV: Toxin wit 80.7 1.9 4.2E-05 29.9 2.7 28 308-337 110-137 (140)
359 KOG4507 Uncharacterized conser 80.5 44 0.00094 30.2 11.1 128 135-265 590-717 (886)
360 PRK09687 putative lyase; Provi 80.2 30 0.00066 28.1 25.4 233 46-304 36-278 (280)
361 COG2976 Uncharacterized protei 79.3 25 0.00054 26.6 12.2 54 232-287 135-188 (207)
362 PF13934 ELYS: Nuclear pore co 79.2 7.6 0.00016 30.3 6.0 97 11-129 87-183 (226)
363 KOG4507 Uncharacterized conser 79.2 24 0.00051 31.7 9.2 101 234-336 618-718 (886)
364 KOG1258 mRNA processing protei 79.0 49 0.0011 29.8 25.7 134 45-181 43-180 (577)
365 KOG2297 Predicted translation 78.0 37 0.00079 27.8 12.7 20 224-243 322-341 (412)
366 KOG1308 Hsp70-interacting prot 77.8 3.3 7.2E-05 33.9 3.7 96 12-121 124-220 (377)
367 PF11663 Toxin_YhaV: Toxin wit 77.5 3.4 7.5E-05 28.8 3.2 34 161-196 104-137 (140)
368 PF08424 NRDE-2: NRDE-2, neces 77.3 41 0.00089 28.0 16.8 122 100-222 48-189 (321)
369 COG5187 RPN7 26S proteasome re 77.2 38 0.00082 27.5 13.4 26 189-214 117-142 (412)
370 COG3947 Response regulator con 77.1 38 0.00082 27.5 15.5 57 227-284 283-339 (361)
371 COG5159 RPN6 26S proteasome re 77.0 38 0.00082 27.4 11.5 126 158-283 9-150 (421)
372 PF10579 Rapsyn_N: Rapsyn N-te 76.8 9.8 0.00021 23.8 4.6 45 199-243 18-63 (80)
373 PF10579 Rapsyn_N: Rapsyn N-te 76.6 11 0.00023 23.6 4.8 46 59-104 18-64 (80)
374 COG2976 Uncharacterized protei 76.6 31 0.00066 26.2 13.3 88 125-216 96-188 (207)
375 PF09454 Vps23_core: Vps23 cor 76.1 14 0.00031 22.1 5.3 50 80-130 5-54 (65)
376 PF04097 Nic96: Nup93/Nic96; 75.9 67 0.0014 29.7 17.7 65 45-112 110-181 (613)
377 PF11817 Foie-gras_1: Foie gra 75.5 22 0.00048 28.2 7.8 56 228-283 183-243 (247)
378 PF06552 TOM20_plant: Plant sp 75.5 31 0.00068 25.7 10.0 43 203-254 96-138 (186)
379 PF12862 Apc5: Anaphase-promot 75.4 20 0.00042 23.4 7.8 32 195-226 49-80 (94)
380 PF10345 Cohesin_load: Cohesin 74.7 72 0.0016 29.5 19.5 194 81-284 28-251 (608)
381 PF13877 RPAP3_C: Potential Mo 74.6 13 0.00027 24.3 5.2 27 2-28 4-31 (94)
382 COG5159 RPN6 26S proteasome re 74.3 45 0.00098 27.0 10.2 24 192-215 130-153 (421)
383 PF14689 SPOB_a: Sensor_kinase 74.2 6.8 0.00015 23.2 3.5 30 292-321 22-51 (62)
384 COG0735 Fur Fe2+/Zn2+ uptake r 74.2 19 0.00042 25.8 6.5 62 245-307 8-69 (145)
385 PF11817 Foie-gras_1: Foie gra 73.5 12 0.00026 29.7 5.9 77 65-144 163-244 (247)
386 PRK10564 maltose regulon perip 73.3 10 0.00023 30.7 5.3 44 79-122 252-296 (303)
387 COG5108 RPO41 Mitochondrial DN 71.6 42 0.00092 30.8 8.9 91 88-180 33-131 (1117)
388 PRK11619 lytic murein transgly 71.3 89 0.0019 29.1 27.4 248 62-320 81-373 (644)
389 PF13762 MNE1: Mitochondrial s 71.2 35 0.00077 24.4 10.4 79 121-199 42-127 (145)
390 smart00028 TPR Tetratricopepti 70.4 9.6 0.00021 17.6 3.9 21 89-109 7-27 (34)
391 PF11848 DUF3368: Domain of un 70.3 16 0.00035 20.2 4.6 31 235-265 14-44 (48)
392 PF08311 Mad3_BUB1_I: Mad3/BUB 70.0 34 0.00074 23.8 9.0 43 101-143 81-124 (126)
393 KOG2063 Vacuolar assembly/sort 69.8 53 0.0012 31.5 9.7 116 190-305 507-638 (877)
394 KOG1498 26S proteasome regulat 69.1 70 0.0015 27.3 9.1 21 8-28 137-157 (439)
395 PHA02875 ankyrin repeat protei 68.8 69 0.0015 27.7 10.0 212 55-294 7-231 (413)
396 KOG1308 Hsp70-interacting prot 68.2 5.7 0.00012 32.7 2.9 94 95-189 126-219 (377)
397 PF09454 Vps23_core: Vps23 cor 67.9 16 0.00035 21.9 4.1 48 257-305 7-54 (65)
398 PF14689 SPOB_a: Sensor_kinase 67.8 22 0.00048 21.0 4.7 22 192-213 28-49 (62)
399 PRK10564 maltose regulon perip 67.5 13 0.00029 30.1 4.8 30 296-325 260-289 (303)
400 PF08311 Mad3_BUB1_I: Mad3/BUB 67.0 40 0.00087 23.5 9.1 43 136-178 81-125 (126)
401 KOG4642 Chaperone-dependent E3 66.6 63 0.0014 25.5 11.1 117 162-283 20-142 (284)
402 PRK14956 DNA polymerase III su 66.5 95 0.0021 27.6 12.6 34 258-291 248-281 (484)
403 PRK10941 hypothetical protein; 66.1 70 0.0015 25.9 10.0 78 191-270 185-263 (269)
404 COG0735 Fur Fe2+/Zn2+ uptake r 65.8 44 0.00095 24.0 6.8 21 161-181 29-49 (145)
405 PF11838 ERAP1_C: ERAP1-like C 65.5 78 0.0017 26.2 14.0 111 64-177 147-262 (324)
406 PRK11639 zinc uptake transcrip 65.2 32 0.0007 25.4 6.2 63 247-310 15-77 (169)
407 PF14853 Fis1_TPR_C: Fis1 C-te 64.8 24 0.00052 20.1 4.6 21 301-321 9-29 (53)
408 COG5108 RPO41 Mitochondrial DN 64.8 68 0.0015 29.6 8.8 90 123-215 33-131 (1117)
409 TIGR02508 type_III_yscG type I 64.7 39 0.00084 22.5 7.4 49 128-181 49-97 (115)
410 PF10366 Vps39_1: Vacuolar sor 64.7 41 0.00088 22.7 6.4 27 260-286 41-67 (108)
411 PF09670 Cas_Cas02710: CRISPR- 64.6 92 0.002 26.8 12.0 55 91-146 139-197 (379)
412 KOG0376 Serine-threonine phosp 64.3 29 0.00063 30.2 6.4 103 53-160 10-113 (476)
413 PRK09462 fur ferric uptake reg 64.2 46 0.001 23.9 6.8 62 247-309 6-68 (148)
414 PF09670 Cas_Cas02710: CRISPR- 64.1 94 0.002 26.7 10.3 55 127-181 140-198 (379)
415 PHA02875 ankyrin repeat protei 64.0 97 0.0021 26.8 14.3 154 89-258 71-230 (413)
416 KOG2066 Vacuolar assembly/sort 64.0 1.3E+02 0.0029 28.3 12.6 45 296-340 650-702 (846)
417 KOG3677 RNA polymerase I-assoc 63.9 93 0.002 26.8 8.9 59 121-179 238-299 (525)
418 KOG2422 Uncharacterized conser 63.4 1.2E+02 0.0025 27.5 15.5 137 44-180 281-447 (665)
419 cd08819 CARD_MDA5_2 Caspase ac 63.1 38 0.00082 21.8 5.8 16 270-285 48-63 (88)
420 PF14561 TPR_20: Tetratricopep 63.0 39 0.00084 21.9 7.1 28 84-111 23-50 (90)
421 KOG1586 Protein required for f 62.8 74 0.0016 25.1 15.1 204 4-230 56-273 (288)
422 PRK09857 putative transposase; 62.5 87 0.0019 25.7 8.9 66 261-327 209-274 (292)
423 cd08819 CARD_MDA5_2 Caspase ac 61.6 40 0.00087 21.6 6.0 12 201-212 50-61 (88)
424 PRK14956 DNA polymerase III su 61.5 1.2E+02 0.0026 27.0 11.1 75 112-188 196-284 (484)
425 KOG2471 TPR repeat-containing 61.2 1.2E+02 0.0026 26.9 9.9 109 160-270 248-381 (696)
426 PF10345 Cohesin_load: Cohesin 60.9 1.4E+02 0.0031 27.7 27.9 185 19-212 38-250 (608)
427 KOG4567 GTPase-activating prot 60.3 69 0.0015 26.4 7.4 70 243-317 263-342 (370)
428 PRK11639 zinc uptake transcrip 60.1 68 0.0015 23.7 8.1 64 212-276 15-78 (169)
429 PF14561 TPR_20: Tetratricopep 59.4 46 0.00099 21.5 9.2 53 115-167 19-73 (90)
430 PF09477 Type_III_YscG: Bacter 59.2 52 0.0011 22.1 10.9 82 95-182 18-99 (116)
431 KOG4521 Nuclear pore complex, 58.8 2E+02 0.0044 28.8 13.3 163 7-177 925-1127(1480)
432 KOG0686 COP9 signalosome, subu 58.5 1.2E+02 0.0026 26.1 15.2 64 84-147 151-216 (466)
433 smart00386 HAT HAT (Half-A-TPR 58.2 20 0.00043 17.0 3.9 26 98-124 2-27 (33)
434 KOG1498 26S proteasome regulat 58.1 1.2E+02 0.0026 26.0 17.5 185 60-253 25-242 (439)
435 cd07153 Fur_like Ferric uptake 57.7 27 0.00058 23.7 4.5 48 263-310 5-52 (116)
436 PF07064 RIC1: RIC1; InterPro 57.6 99 0.0021 24.9 15.8 61 192-252 184-249 (258)
437 KOG0376 Serine-threonine phosp 57.1 31 0.00066 30.1 5.4 105 194-304 11-116 (476)
438 KOG4814 Uncharacterized conser 57.1 1.3E+02 0.0029 27.7 9.2 87 197-286 364-456 (872)
439 KOG2659 LisH motif-containing 56.7 94 0.002 24.3 7.7 22 89-110 70-91 (228)
440 PF04910 Tcf25: Transcriptiona 56.6 1.3E+02 0.0027 25.7 18.7 136 80-216 37-222 (360)
441 cd00280 TRFH Telomeric Repeat 56.2 85 0.0018 23.6 11.1 65 239-306 85-156 (200)
442 KOG0292 Vesicle coat complex C 54.7 1.6E+02 0.0035 28.4 9.6 45 95-145 655-699 (1202)
443 COG4259 Uncharacterized protei 54.5 61 0.0013 21.5 6.5 48 100-147 54-101 (121)
444 PF07575 Nucleopor_Nup85: Nup8 54.4 1.8E+02 0.0038 26.8 17.7 78 243-322 390-467 (566)
445 PF04190 DUF410: Protein of un 54.3 1.1E+02 0.0025 24.5 16.8 83 150-252 88-170 (260)
446 PF12862 Apc5: Anaphase-promot 53.9 59 0.0013 21.1 7.0 23 229-251 47-69 (94)
447 PF10255 Paf67: RNA polymerase 53.9 97 0.0021 26.8 7.8 59 192-250 127-191 (404)
448 PRK11619 lytic murein transgly 52.8 2E+02 0.0044 26.9 23.8 182 60-247 254-463 (644)
449 cd07153 Fur_like Ferric uptake 52.8 65 0.0014 21.8 5.8 49 228-276 5-53 (116)
450 PRK14958 DNA polymerase III su 51.8 1.8E+02 0.004 26.2 11.2 75 179-256 192-278 (509)
451 COG5191 Uncharacterized conser 51.2 53 0.0012 27.0 5.5 80 43-125 103-183 (435)
452 PF09868 DUF2095: Uncharacteri 50.7 77 0.0017 21.5 5.5 37 89-126 67-103 (128)
453 PF04910 Tcf25: Transcriptiona 50.5 1.6E+02 0.0035 25.1 16.5 139 43-181 36-222 (360)
454 PF02184 HAT: HAT (Half-A-TPR) 50.0 33 0.00073 17.1 3.4 25 308-334 2-26 (32)
455 KOG2659 LisH motif-containing 49.8 1.2E+02 0.0027 23.7 7.7 62 150-213 24-90 (228)
456 smart00777 Mad3_BUB1_I Mad3/BU 49.1 89 0.0019 21.8 8.6 41 102-142 82-123 (125)
457 PF01475 FUR: Ferric uptake re 49.1 64 0.0014 22.0 5.3 45 229-273 13-57 (120)
458 PF01475 FUR: Ferric uptake re 49.0 57 0.0012 22.3 5.0 44 157-200 12-55 (120)
459 KOG0292 Vesicle coat complex C 49.0 1.6E+02 0.0034 28.4 8.7 75 8-111 626-700 (1202)
460 PRK09462 fur ferric uptake reg 48.7 99 0.0021 22.2 7.6 61 214-275 8-69 (148)
461 KOG2471 TPR repeat-containing 48.5 2E+02 0.0043 25.7 10.9 106 126-234 248-380 (696)
462 PRK07003 DNA polymerase III su 48.4 2.6E+02 0.0056 26.9 11.9 84 169-255 181-277 (830)
463 PF08870 DUF1832: Domain of un 48.2 48 0.001 22.6 4.3 26 204-229 6-32 (113)
464 PF14853 Fis1_TPR_C: Fis1 C-te 48.1 52 0.0011 18.8 5.2 23 53-75 7-29 (53)
465 KOG2908 26S proteasome regulat 47.9 1.7E+02 0.0036 24.6 11.1 21 266-286 123-143 (380)
466 KOG0991 Replication factor C, 47.8 1.4E+02 0.003 23.7 14.9 90 164-256 171-271 (333)
467 PF10366 Vps39_1: Vacuolar sor 47.8 85 0.0018 21.2 8.2 28 294-321 40-67 (108)
468 PRK06645 DNA polymerase III su 47.5 2.2E+02 0.0047 25.8 10.4 87 202-291 188-290 (507)
469 PF02847 MA3: MA3 domain; Int 47.4 69 0.0015 21.5 5.2 21 192-212 7-27 (113)
470 PRK09857 putative transposase; 47.3 1.6E+02 0.0035 24.2 9.3 26 159-184 247-272 (292)
471 KOG0991 Replication factor C, 46.2 1.5E+02 0.0032 23.5 12.4 41 102-144 178-218 (333)
472 PRK14963 DNA polymerase III su 46.2 2.3E+02 0.0049 25.6 10.4 86 204-292 178-275 (504)
473 KOG2300 Uncharacterized conser 45.8 2.2E+02 0.0048 25.4 17.9 202 47-248 323-553 (629)
474 KOG4567 GTPase-activating prot 45.3 1.1E+02 0.0025 25.2 6.5 58 278-340 263-320 (370)
475 PF12069 DUF3549: Protein of u 45.1 1.9E+02 0.0041 24.4 13.4 87 123-215 171-258 (340)
476 COG5191 Uncharacterized conser 45.0 1.1E+02 0.0023 25.4 6.3 79 80-159 104-183 (435)
477 KOG2396 HAT (Half-A-TPR) repea 44.4 2.4E+02 0.0051 25.3 28.5 82 42-125 100-181 (568)
478 PF11768 DUF3312: Protein of u 43.9 2.5E+02 0.0054 25.4 10.8 130 3-149 409-538 (545)
479 PRK13342 recombination factor 43.8 2.2E+02 0.0048 24.8 19.3 44 154-197 229-275 (413)
480 PHA03100 ankyrin repeat protei 43.5 2.4E+02 0.0051 25.1 10.3 210 103-330 48-280 (480)
481 PRK07003 DNA polymerase III su 43.4 3.1E+02 0.0067 26.4 11.5 36 150-186 244-279 (830)
482 KOG2034 Vacuolar sorting prote 43.1 3.2E+02 0.0069 26.5 24.2 47 157-212 509-555 (911)
483 COG4259 Uncharacterized protei 43.0 98 0.0021 20.5 6.1 57 169-228 54-110 (121)
484 PRK08691 DNA polymerase III su 42.9 3E+02 0.0065 26.1 12.1 84 169-255 181-277 (709)
485 PF03943 TAP_C: TAP C-terminal 42.2 14 0.00031 20.8 0.9 24 60-83 26-49 (51)
486 PF03745 DUF309: Domain of unk 42.2 74 0.0016 18.9 5.5 17 164-180 11-27 (62)
487 smart00804 TAP_C C-terminal do 41.9 22 0.00049 21.1 1.7 23 61-83 39-61 (63)
488 PF08314 Sec39: Secretory path 41.4 3.2E+02 0.007 26.0 10.4 190 154-344 434-649 (715)
489 COG5116 RPN2 26S proteasome re 41.4 2.7E+02 0.006 25.4 8.6 25 228-252 213-237 (926)
490 PF02847 MA3: MA3 domain; Int 41.3 1.1E+02 0.0023 20.5 5.4 21 124-144 8-28 (113)
491 KOG3364 Membrane protein invol 40.8 1.3E+02 0.0029 21.4 9.1 87 97-186 12-103 (149)
492 KOG1839 Uncharacterized protei 40.1 3.3E+02 0.0071 27.7 9.7 158 126-283 940-1124(1236)
493 PRK14951 DNA polymerase III su 39.3 3.3E+02 0.0071 25.5 11.9 83 170-255 187-282 (618)
494 COG2178 Predicted RNA-binding 39.2 1.7E+02 0.0038 22.3 10.0 107 64-180 20-149 (204)
495 COG4976 Predicted methyltransf 38.6 92 0.002 24.5 4.9 55 57-113 5-59 (287)
496 PF09868 DUF2095: Uncharacteri 37.9 1.3E+02 0.0028 20.5 5.2 21 303-323 71-91 (128)
497 PF10255 Paf67: RNA polymerase 37.9 2.7E+02 0.0059 24.2 15.0 60 120-179 124-191 (404)
498 PRK14962 DNA polymerase III su 37.9 3E+02 0.0065 24.6 14.6 31 181-213 192-222 (472)
499 PF12926 MOZART2: Mitotic-spin 37.4 1.1E+02 0.0024 19.6 8.0 43 104-146 29-71 (88)
500 COG0790 FOG: TPR repeat, SEL1 36.9 2.3E+02 0.005 23.0 20.0 151 95-254 53-222 (292)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.4e-56 Score=404.89 Aligned_cols=330 Identities=21% Similarity=0.311 Sum_probs=309.3
Q ss_pred CchhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCc
Q 038490 3 TSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK 82 (344)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 82 (344)
.++..++..+++.|+++.|.++|+.|... +..||..+|+.+|.+|++.|++++|.++|++|.+. |+.||
T Consensus 438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~----------Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~Pd 506 (1060)
T PLN03218 438 STFNMLMSVCASSQDIDGALRVLRLVQEA----------GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEAN 506 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHc----------CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCC
Confidence 46778899999999999999999998543 36789999999999999999999999999999987 78999
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcc--C-CCCcccHHHHH
Q 038490 83 EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY--V-SPDACSYNILI 159 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~-~~~~~~~~~l~ 159 (344)
..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|... + .|+..+|++++
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI 586 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM 586 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999753 3 38999999999
Q ss_pred HHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 038490 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239 (344)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 239 (344)
.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+ .|+.||..+|+.++.+|++.|++
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~-~Gv~PD~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPDEVFFSALVDVAGHAGDL 665 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999665 58999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038490 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319 (344)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 319 (344)
++|.+++++|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCChhhHHHHHHHHhhcCCC
Q 038490 320 GDKGCKANPISYNVILGGLCKDGKC 344 (344)
Q Consensus 320 ~~~~~~p~~~~~~~ll~~~~~~g~~ 344 (344)
.+.|+.||..||+.++.+|++.|++
T Consensus 746 ~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 746 KRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999998863
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-54 Score=393.98 Aligned_cols=325 Identities=20% Similarity=0.311 Sum_probs=312.4
Q ss_pred CchhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCc
Q 038490 3 TSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK 82 (344)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 82 (344)
.++..++..|++.|++++|.++|++|... +..||..+|+.+|.+|++.|++++|.++|+.|.+. |+.||
T Consensus 473 ~tynsLI~~y~k~G~vd~A~~vf~eM~~~----------Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-Gv~PD 541 (1060)
T PLN03218 473 KLYTTLISTCAKSGKVDAMFEVFHEMVNA----------GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPD 541 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHc----------CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCC
Confidence 57889999999999999999999999543 36789999999999999999999999999999987 79999
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC-CCcccHHHHH
Q 038490 83 EIIFCNVIGFYGRARLLERALQMFDEMSS--FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILI 159 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~ 159 (344)
..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.+. |+..+|+.++
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI 621 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 99999999999999999999999999986 67899999999999999999999999999999999886 8999999999
Q ss_pred HHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 038490 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239 (344)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 239 (344)
.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+ .|+.|+..+|+.++.+|++.|++
T Consensus 622 ~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-~G~~pd~~tynsLI~ay~k~G~~ 700 (1060)
T PLN03218 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIKLGTVSYSSLMGACSNAKNW 700 (1060)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999765 59999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038490 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319 (344)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 319 (344)
++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.+++++|
T Consensus 701 eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 701 KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCChhhHHHHHHHHh
Q 038490 320 GDKGCKANPISYNVILGGLC 339 (344)
Q Consensus 320 ~~~~~~p~~~~~~~ll~~~~ 339 (344)
.+.|+.||..+|++|+..|.
T Consensus 781 ~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 781 KEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999997653
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.9e-52 Score=374.84 Aligned_cols=320 Identities=18% Similarity=0.188 Sum_probs=293.9
Q ss_pred CCchhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCC
Q 038490 2 PTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVP 81 (344)
Q Consensus 2 p~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 81 (344)
+.++..++..|.+.|++++|.++|+++. .||..+|+.++.+|++.|++++|.++|++|.+. |+.|
T Consensus 158 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~--------------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p 222 (697)
T PLN03081 158 QYMMNRVLLMHVKCGMLIDARRLFDEMP--------------ERNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDA 222 (697)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhcCC--------------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCC
Confidence 3578889999999999999999999992 248899999999999999999999999999987 7899
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHH
Q 038490 82 KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161 (344)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 161 (344)
+..+|+.++.+|++.|..+.+.+++..+.+.|+.++..+++.|+.+|++.|++++|.++|+.|.. ++..+|++++.+
T Consensus 223 ~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~n~li~~ 299 (697)
T PLN03081 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAWNSMLAG 299 (697)
T ss_pred ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999865 788999999999
Q ss_pred HHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 038490 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241 (344)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 241 (344)
|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..+.+. |+.||..+|+.++.+|++.|++++
T Consensus 300 y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~ 378 (697)
T PLN03081 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMED 378 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999999999999999999999999999997664 889999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 038490 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 242 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
|.++|++|.+ ||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+
T Consensus 379 A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 379 ARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 9999998863 688899999999999999999999999999999999999999999999999999999999999975
Q ss_pred -CCCCCChhhHHHHHHHHhhcCCC
Q 038490 322 -KGCKANPISYNVILGGLCKDGKC 344 (344)
Q Consensus 322 -~~~~p~~~~~~~ll~~~~~~g~~ 344 (344)
.|+.|+..+|++++++|++.|++
T Consensus 455 ~~g~~p~~~~y~~li~~l~r~G~~ 478 (697)
T PLN03081 455 NHRIKPRAMHYACMIELLGREGLL 478 (697)
T ss_pred hcCCCCCccchHhHHHHHHhcCCH
Confidence 68999999999999999998863
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-50 Score=372.60 Aligned_cols=324 Identities=17% Similarity=0.197 Sum_probs=291.0
Q ss_pred CCchhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCC
Q 038490 2 PTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVP 81 (344)
Q Consensus 2 p~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 81 (344)
+.++..++..|.+.|++++|.++|+++. .+|..+|+.+|.+|++.|++++|.++|++|... |+.|
T Consensus 222 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~--------------~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~P 286 (857)
T PLN03077 222 VDVVNALITMYVKCGDVVSARLVFDRMP--------------RRDCISWNAMISGYFENGECLEGLELFFTMREL-SVDP 286 (857)
T ss_pred cchHhHHHHHHhcCCCHHHHHHHHhcCC--------------CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCC
Confidence 3567889999999999999999999992 248899999999999999999999999999987 7999
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHH
Q 038490 82 KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161 (344)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 161 (344)
|..+|+.++.+|++.|+.+.|.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. ++..+|++++.+
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~ 363 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISG 363 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999975 789999999999
Q ss_pred HHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 038490 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241 (344)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 241 (344)
|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+ .|+.|+..+|+.|+.+|++.|++++
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER-KGLISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH-hCCCcchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999988655 4788888888888888888888777
Q ss_pred HHHHHHHHHHC------------------------------CC-------------------------------------
Q 038490 242 ALGVKEEMVRD------------------------------KI------------------------------------- 254 (344)
Q Consensus 242 a~~~~~~~~~~------------------------------~~------------------------------------- 254 (344)
|.++|++|.+. ++
T Consensus 443 A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 77777665332 11
Q ss_pred ----------------------------CCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 038490 255 ----------------------------EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306 (344)
Q Consensus 255 ----------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 306 (344)
.+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 3456678888888888999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHh-hCCCCCChhhHHHHHHHHhhcCCC
Q 038490 307 EDFEAAFTILDEMG-DKGCKANPISYNVILGGLCKDGKC 344 (344)
Q Consensus 307 ~~~~~a~~~~~~~~-~~~~~p~~~~~~~ll~~~~~~g~~ 344 (344)
|++++|.++|++|. +.|+.|+..+|++++++|++.|++
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~ 641 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Confidence 99999999999998 678999999999999999998873
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.4e-49 Score=356.00 Aligned_cols=318 Identities=16% Similarity=0.169 Sum_probs=234.8
Q ss_pred CchhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCc
Q 038490 3 TSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK 82 (344)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 82 (344)
.++..++..+.+.|++++|+++|++|...+ ..|+..+|+.++.++.+.|..+.+.+++..+.+. |+.||
T Consensus 190 ~t~n~li~~~~~~g~~~~A~~lf~~M~~~g----------~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~-g~~~d 258 (697)
T PLN03081 190 ASWGTIIGGLVDAGNYREAFALFREMWEDG----------SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT-GVVGD 258 (697)
T ss_pred eeHHHHHHHHHHCcCHHHHHHHHHHHHHhC----------CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh-CCCcc
Confidence 578899999999999999999999996443 5567777777777777777777777777776665 56777
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC-CCcccHHHHHHH
Q 038490 83 EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHG 161 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~ 161 (344)
..+++.|+.+|++.|++++|.++|+.|. ++|..+|+.++.+|++.|+.++|.++|++|.+.+. |+..||+.++.+
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 7777777777777777777777777765 45666777777777777777777777777766655 777777777777
Q ss_pred HHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 038490 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241 (344)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 241 (344)
|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.||.+|++.|+.++
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~n~lI~~y~~~G~~~~ 409 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-----RKNLISWNALIAGYGNHGRGTK 409 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHcCCHHH
Confidence 77777777777777777777777777777777777777777777777777642 3566777777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHH-cCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHh
Q 038490 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE-RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320 (344)
Q Consensus 242 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 320 (344)
|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++|
T Consensus 410 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~- 488 (697)
T PLN03081 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA- 488 (697)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-
Confidence 777777777777777777777777777777777777777777754 467777777777777777777777777776654
Q ss_pred hCCCCCChhhHHHHHHHHhhcCC
Q 038490 321 DKGCKANPISYNVILGGLCKDGK 343 (344)
Q Consensus 321 ~~~~~p~~~~~~~ll~~~~~~g~ 343 (344)
++.|+..+|++|+.+|..+|+
T Consensus 489 --~~~p~~~~~~~Ll~a~~~~g~ 509 (697)
T PLN03081 489 --PFKPTVNMWAALLTACRIHKN 509 (697)
T ss_pred --CCCCCHHHHHHHHHHHHHcCC
Confidence 456777777777777777665
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.3e-49 Score=363.07 Aligned_cols=318 Identities=18% Similarity=0.234 Sum_probs=303.2
Q ss_pred chhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch
Q 038490 4 SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE 83 (344)
Q Consensus 4 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 83 (344)
....++..|.+.|+++.|.++|++|. +||..+|+.+|.+|++.|++++|.++|++|... |+.||.
T Consensus 123 ~~n~li~~~~~~g~~~~A~~~f~~m~--------------~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~ 187 (857)
T PLN03077 123 LGNAMLSMFVRFGELVHAWYVFGKMP--------------ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDV 187 (857)
T ss_pred HHHHHHHHHHhCCChHHHHHHHhcCC--------------CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCh
Confidence 45678889999999999999999992 248899999999999999999999999999987 799999
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038490 84 IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCV 163 (344)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (344)
.+|+.++++|+..+++..+.+++..+.+.|+.|+..+++.|+.+|++.|+++.|..+|++|.. ++..+|++++.+|+
T Consensus 188 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~ 264 (857)
T PLN03077 188 YTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYF 264 (857)
T ss_pred hHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999975 78999999999999
Q ss_pred hhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 038490 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243 (344)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 243 (344)
+.|++++|+++|++|...|+.||..||+.++.+|++.|+.+.|.+++..+.+ .|+.||..+|+.++.+|++.|++++|.
T Consensus 265 ~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~d~~~~n~Li~~y~k~g~~~~A~ 343 (857)
T PLN03077 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK-TGFAVDVSVCNSLIQMYLSLGSWGEAE 343 (857)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-hCCccchHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999665 499999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCC
Q 038490 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323 (344)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 323 (344)
++|++|. .||..+|+.++.+|.+.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|
T Consensus 344 ~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g 419 (857)
T PLN03077 344 KVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419 (857)
T ss_pred HHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 9999986 468899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHhhcCCC
Q 038490 324 CKANPISYNVILGGLCKDGKC 344 (344)
Q Consensus 324 ~~p~~~~~~~ll~~~~~~g~~ 344 (344)
+.|+..+|++|+++|+++|++
T Consensus 420 ~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 420 LISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred CCcchHHHHHHHHHHHHcCCH
Confidence 999999999999999999974
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=2e-25 Score=189.22 Aligned_cols=304 Identities=15% Similarity=0.103 Sum_probs=251.2
Q ss_pred hhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCC--chhH
Q 038490 8 LACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVP--KEII 85 (344)
Q Consensus 8 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 85 (344)
.+..+...|++++|+..|+++... .+.+..++..+...+...|++++|..+++.+.......+ ....
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~-----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 109 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKV-----------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLA 109 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhc-----------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 455667789999999999998543 334778899999999999999999999999887521111 1246
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCc-----ccHHHHHH
Q 038490 86 FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDA-----CSYNILIH 160 (344)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~ 160 (344)
+..+...|.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|...++.+....+.+. ..+..+..
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 7888999999999999999999999865 56788999999999999999999999999987655321 23556777
Q ss_pred HHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 038490 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240 (344)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 240 (344)
.+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.++++.+.. ......+++.++.+|.+.|+++
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 189 QALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQD-PEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-hhhHHHHHHHHHHHHHHcCCHH
Confidence 8889999999999999998764 3345677788889999999999999999987642 1122456888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhc---cCCHHHHHHHHH
Q 038490 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK---EEDFEAAFTILD 317 (344)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~ 317 (344)
+|...++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..+++
T Consensus 267 ~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 267 EGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred HHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 9999999999874 55566788999999999999999999999886 5888899988887664 568999999999
Q ss_pred HHhhCCCCCChh
Q 038490 318 EMGDKGCKANPI 329 (344)
Q Consensus 318 ~~~~~~~~p~~~ 329 (344)
+|.+.++.|++.
T Consensus 343 ~~~~~~~~~~p~ 354 (389)
T PRK11788 343 DLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhCCCC
Confidence 999888888776
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=3.3e-24 Score=201.04 Aligned_cols=317 Identities=11% Similarity=0.047 Sum_probs=247.0
Q ss_pred hhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhH
Q 038490 6 IRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEII 85 (344)
Q Consensus 6 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 85 (344)
..++..+...|++++|+.+++.+.. ..+.+..+|..++.++...|++++|...|+.+.+.. +.+...
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 637 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAAD-----------AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALA 637 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH-----------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHH
Confidence 3455666667777777777766632 233366777778888888888888888888777642 345566
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhh
Q 038490 86 FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165 (344)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (344)
+..+..++...|++++|...|+.+.+.. +.+..++..+...+...|++++|..+++.+....+.+...+..+...+...
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQ 716 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHC
Confidence 7777777778888888888888877765 556677777888888888888888888888777766777777788888888
Q ss_pred CChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 038490 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245 (344)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 245 (344)
|++++|.+.|+++...+ |+..++..+..++.+.|++++|...++++++.. +.+...+..+...|...|++++|...
T Consensus 717 g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~ 792 (899)
T TIGR02917 717 KDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKH 792 (899)
T ss_pred CCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 88888888888887764 444666677788888888888888888877643 56778888888888899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC
Q 038490 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325 (344)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 325 (344)
|+++.+..+. +..+++.+...+...|+ .+|+..++++...... +..++..+...+...|++++|..+++++.+.+..
T Consensus 793 ~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 793 YRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999887644 78888889999999998 7899999988876433 5667778888899999999999999999987643
Q ss_pred CChhhHHHHHHHHhhcCCC
Q 038490 326 ANPISYNVILGGLCKDGKC 344 (344)
Q Consensus 326 p~~~~~~~ll~~~~~~g~~ 344 (344)
+..++..+..++.+.|++
T Consensus 870 -~~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 870 -AAAIRYHLALALLATGRK 887 (899)
T ss_pred -ChHHHHHHHHHHHHcCCH
Confidence 889999999999999874
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=3.5e-23 Score=194.18 Aligned_cols=314 Identities=11% Similarity=0.037 Sum_probs=162.0
Q ss_pred hhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHH
Q 038490 8 LACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFC 87 (344)
Q Consensus 8 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (344)
++..+.+.|++++|+.+++.+.. ..+.+..+|..+...+...|++++|.+.|+++.+.. +.+...+.
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~ 503 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEK-----------KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAA 503 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH-----------hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHH
Confidence 33444445555555555554422 122345556666666666666666666666655431 23344455
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCC
Q 038490 88 NVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRR 167 (344)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (344)
.+...+...|++++|.+.|+.+.+.+ +.+..++..+...+.+.|+.++|..+++++....+.+...+..++..|.+.|+
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCC
Confidence 55555666666666666666665544 44455555555555556666666666655555444444555555555555555
Q ss_pred hhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 038490 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247 (344)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 247 (344)
+++|..+++++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+..++.+.|++++|...++
T Consensus 583 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 583 LKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555555432 2344455555555555555555555555554432 2334445555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC
Q 038490 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327 (344)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 327 (344)
++.+..+. +..++..++..+...|++++|..+++.+.+.+. ++...+..+...+...|++++|...|+++...+ |+
T Consensus 660 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~ 735 (899)
T TIGR02917 660 RALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PS 735 (899)
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CC
Confidence 55544322 344455555555555555555555555544432 233444444444445555555555555444432 33
Q ss_pred hhhHHHHHHHHhhcC
Q 038490 328 PISYNVILGGLCKDG 342 (344)
Q Consensus 328 ~~~~~~ll~~~~~~g 342 (344)
..++..+..++.+.|
T Consensus 736 ~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 736 SQNAIKLHRALLASG 750 (899)
T ss_pred chHHHHHHHHHHHCC
Confidence 334444444444444
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=2.4e-22 Score=170.53 Aligned_cols=283 Identities=15% Similarity=0.069 Sum_probs=237.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCC---HHHHHHHHH
Q 038490 50 YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT---VKFFNTLLN 126 (344)
Q Consensus 50 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 126 (344)
.......+...|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.+...+..++ ..++..+..
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3334556778899999999999999852 44567888999999999999999999999987542221 256788899
Q ss_pred HHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCH----hhHHHHHHHHHhhch
Q 038490 127 PKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL----VTFGTLIYGLCLELR 202 (344)
Q Consensus 127 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 202 (344)
.|...|+++.|..+|+++.+..+.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|+
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999877777889999999999999999999999999887543322 234566777889999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHH
Q 038490 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282 (344)
Q Consensus 203 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 282 (344)
+++|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.++.....+++.++.+|...|++++|...++
T Consensus 196 ~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 196 LDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred HHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999987652 445677888889999999999999999999987544345678899999999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhh
Q 038490 283 EMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340 (344)
Q Consensus 283 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 340 (344)
++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+..
T Consensus 274 ~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 274 RALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLA 327 (389)
T ss_pred HHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhh
Confidence 99887 466677788999999999999999999999875 6899999988887664
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=1.1e-20 Score=168.26 Aligned_cols=315 Identities=12% Similarity=0.044 Sum_probs=217.8
Q ss_pred hhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHH
Q 038490 8 LACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFC 87 (344)
Q Consensus 8 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (344)
++..+.+.|++++|+.+++.+.... +.+...+..++.+....|++++|.+.++++.... +.+...+.
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~-----------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~ 114 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA-----------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVL 114 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC-----------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHH
Confidence 4556667788888888887764332 2255666667777777888888888888887742 44456677
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCC
Q 038490 88 NVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRR 167 (344)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (344)
.+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++.+....+.+...+..+ ..+...|+
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~ 192 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSR 192 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCC
Confidence 77788888888888888888888764 55567777788888888888888888887766555444444333 34677788
Q ss_pred hhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH----HH
Q 038490 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL----AL 243 (344)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~ 243 (344)
+++|...++.+.+....++......+..++...|++++|+..++++++.. +.+...+..+...+...|++++ |.
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 88888888877665433344444455566777888888888888776542 4456667777777777887774 67
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCC
Q 038490 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323 (344)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 323 (344)
..+++..+..+. +...+..+...+...|++++|...+++....... +...+..+..++.+.|++++|...++++.+.
T Consensus 271 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~- 347 (656)
T PRK15174 271 EHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE- 347 (656)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 777777776544 6677777778888888888888888877776432 4455666777777788888888888777764
Q ss_pred CCCChhh-HHHHHHHHhhcCC
Q 038490 324 CKANPIS-YNVILGGLCKDGK 343 (344)
Q Consensus 324 ~~p~~~~-~~~ll~~~~~~g~ 343 (344)
.|+... +..+..++...|+
T Consensus 348 -~P~~~~~~~~~a~al~~~G~ 367 (656)
T PRK15174 348 -KGVTSKWNRYAAAALLQAGK 367 (656)
T ss_pred -CccchHHHHHHHHHHHHCCC
Confidence 344333 2233445555554
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=2.1e-20 Score=166.46 Aligned_cols=300 Identities=10% Similarity=0.021 Sum_probs=245.7
Q ss_pred CCchhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCC
Q 038490 2 PTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVP 81 (344)
Q Consensus 2 p~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 81 (344)
|.....++......|++++|+..|+.+... .|.+...+..+...+.+.|++++|...++++.... +.
T Consensus 76 ~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~-----------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~ 142 (656)
T PRK15174 76 RDLLRRWVISPLASSQPDAVLQVVNKLLAV-----------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--SG 142 (656)
T ss_pred hhHHHHHhhhHhhcCCHHHHHHHHHHHHHh-----------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC
Confidence 344566777788899999999999998443 33477889999999999999999999999998742 44
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC-CCcccHHHHHH
Q 038490 82 KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIH 160 (344)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~ 160 (344)
+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+....+ ++......+..
T Consensus 143 ~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~ 220 (656)
T PRK15174 143 NSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVD 220 (656)
T ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 56788889999999999999999999887765 3444444444 347889999999999999877654 34444555678
Q ss_pred HHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHH----HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038490 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE----ALKLKEDIMRVYNVKPDGQVFASLIKGLCAV 236 (344)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 236 (344)
.+...|++++|+..++++.... +.+...+..+...+...|++++ |...++++++.. +.+...+..+...+.+.
T Consensus 221 ~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 221 TLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--SDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHC
Confidence 8899999999999999999874 3356777788889999999986 899999988753 45678899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCCHHHHHHH
Q 038490 237 GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS-VTYNALISGFCKEEDFEAAFTI 315 (344)
Q Consensus 237 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~ 315 (344)
|++++|...+++..+..+. +...+..+..++...|++++|...++++...+ |+. ..+..+..++...|+.++|...
T Consensus 298 g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~ 374 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESV 374 (656)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999988655 67788889999999999999999999998874 443 3344456788999999999999
Q ss_pred HHHHhhC
Q 038490 316 LDEMGDK 322 (344)
Q Consensus 316 ~~~~~~~ 322 (344)
|++..+.
T Consensus 375 l~~al~~ 381 (656)
T PRK15174 375 FEHYIQA 381 (656)
T ss_pred HHHHHHh
Confidence 9999864
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=1.8e-18 Score=154.37 Aligned_cols=318 Identities=11% Similarity=-0.024 Sum_probs=200.3
Q ss_pred hhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHH
Q 038490 7 RLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF 86 (344)
Q Consensus 7 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 86 (344)
..+..+.+.|++++|+..|++..... |+...|..+..+|.+.|++++|++.++...+.. +.+...+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~------------p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~ 197 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECK------------PDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKAL 197 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC------------CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHH
Confidence 44666677777777777777753321 244566667777777777777777777766532 2234455
Q ss_pred HHHHHHHHhcccHHHHHH--------------------------------------------------------------
Q 038490 87 CNVIGFYGRARLLERALQ-------------------------------------------------------------- 104 (344)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~-------------------------------------------------------------- 104 (344)
..+..++...|++++|+.
T Consensus 198 ~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (615)
T TIGR00990 198 NRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRP 277 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcch
Confidence 555566666666555543
Q ss_pred --------------------------------------HHHHHHhcC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038490 105 --------------------------------------MFDEMSSFN-V-QMTVKFFNTLLNPKLTCGKLDRMKELFQIM 144 (344)
Q Consensus 105 --------------------------------------~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 144 (344)
.|+...+.+ . +.....+..+..++...|++++|...+++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 278 AGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333221 1 112334555556666677777777777777
Q ss_pred hccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHH
Q 038490 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224 (344)
Q Consensus 145 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 224 (344)
....+.....|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|++.++.. +.+..
T Consensus 358 l~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~ 434 (615)
T TIGR00990 358 IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIF 434 (615)
T ss_pred HHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHH
Confidence 76655556667777777777777777777777776653 2245666667777777778888888777766542 34456
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChh------hHHH
Q 038490 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV------TYNA 298 (344)
Q Consensus 225 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~ 298 (344)
.+..+..++.+.|++++|+..+++..+..+. +...++.+...+...|++++|+..|++........+.. .++.
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 6667777777778888888888777765433 56777777777888888888888887776653221111 1111
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCC
Q 038490 299 LISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343 (344)
Q Consensus 299 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 343 (344)
.+..+...|++++|..++++..+.. +.+...+..+...+.+.|+
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~ 557 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGD 557 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccC
Confidence 1222334577888888887776643 1234457777777777775
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=4.9e-18 Score=161.25 Aligned_cols=300 Identities=9% Similarity=-0.037 Sum_probs=199.5
Q ss_pred hhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHH-
Q 038490 8 LACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF- 86 (344)
Q Consensus 8 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~- 86 (344)
.+..+...|++++|+..|++..+. .+.+..++..+..++.+.|++++|+..|++..+...-.+....+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~-----------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRA-----------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 356677889999999999987443 33378888999999999999999999999988643111111111
Q ss_pred -----------HHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccH
Q 038490 87 -----------CNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSY 155 (344)
Q Consensus 87 -----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (344)
......+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|+++.+..+.+...+
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~ 422 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAV 422 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 122445667888888888888888775 55667777788888888888888888888876655444333
Q ss_pred HHHH------------------------------------------HHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHH
Q 038490 156 NILI------------------------------------------HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193 (344)
Q Consensus 156 ~~l~------------------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 193 (344)
..+. ..+...|++++|++.|++..+.... +...+..+
T Consensus 423 ~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~L 501 (1157)
T PRK11447 423 RGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRL 501 (1157)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3222 2344567788888888887766322 44556667
Q ss_pred HHHHHhhchHHHHHHHHHHHHHhcCCC-----------------------------------------------------
Q 038490 194 IYGLCLELRVDEALKLKEDIMRVYNVK----------------------------------------------------- 220 (344)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------------------------------------------- 220 (344)
...+.+.|++++|...++++++...-.
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 777788888888888877765432111
Q ss_pred -------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHH
Q 038490 221 -------------------PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281 (344)
Q Consensus 221 -------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 281 (344)
.+...+..+...+.+.|++++|+..|+++.+..+. +...+..++..+...|++++|...+
T Consensus 582 ~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 11122333444555666667777777766665443 5666677777777777777777777
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 038490 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322 (344)
Q Consensus 282 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 322 (344)
+...+... .+...+..+..++...|++++|.++++++...
T Consensus 661 ~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 661 AKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 76655421 13444555666667777777777777777653
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=6.1e-18 Score=151.08 Aligned_cols=234 Identities=10% Similarity=0.029 Sum_probs=192.8
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038490 84 IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCV 163 (344)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (344)
..+..+...+...|++++|+..|+..++.. +.....|..+..++...|++++|...|+...+..+.+...|..+...+.
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 410 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF 410 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345566667778999999999999999875 4457788899999999999999999999998887778889999999999
Q ss_pred hhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 038490 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243 (344)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 243 (344)
..|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++.++.. +.+...++.+...+...|++++|.
T Consensus 411 ~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 411 IKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHH
Confidence 9999999999999998874 3356677778888999999999999999988753 556788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHH------HHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHH
Q 038490 244 GVKEEMVRDKIEMDAG------IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317 (344)
Q Consensus 244 ~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 317 (344)
..|++........+.. .++.....+...|++++|..++++....... +...+..+...+.+.|++++|...|+
T Consensus 488 ~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 488 EKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999998865432111 1222233344579999999999998887532 45678889999999999999999999
Q ss_pred HHhhC
Q 038490 318 EMGDK 322 (344)
Q Consensus 318 ~~~~~ 322 (344)
+..+.
T Consensus 567 ~A~~l 571 (615)
T TIGR00990 567 RAAEL 571 (615)
T ss_pred HHHHH
Confidence 98764
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=1.2e-18 Score=144.35 Aligned_cols=296 Identities=14% Similarity=0.061 Sum_probs=169.1
Q ss_pred chhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch
Q 038490 4 SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE 83 (344)
Q Consensus 4 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 83 (344)
+++.++..+...|++++|+.+++.+.+.. +....+|-.+..++...|+.+.|.+.|....+ +.|+.
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~-----------p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l 183 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELK-----------PKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDL 183 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcC-----------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcch
Confidence 57778899999999999999999975443 23788898999999999999999988888776 34554
Q ss_pred hHH-HHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 038490 84 IIF-CNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGC 162 (344)
Q Consensus 84 ~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (344)
... +.+.......|+.++|...|.+.++.. +.-...|..|...+...|+...|++-|++.....+.-...|..|...|
T Consensus 184 ~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ 262 (966)
T KOG4626|consen 184 YCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVY 262 (966)
T ss_pred hhhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHH
Confidence 332 233444445666666666666665543 223345666666666666666666666666655554455555566666
Q ss_pred HhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHH
Q 038490 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD-GQVFASLIKGLCAVGELSL 241 (344)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 241 (344)
...+.+++|...+.+..... +-....+..+...|...|..+-|+..|++.+.. .|+ ...|+.|..++-..|+..+
T Consensus 263 ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~---~P~F~~Ay~NlanALkd~G~V~e 338 (966)
T KOG4626|consen 263 KEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL---QPNFPDAYNNLANALKDKGSVTE 338 (966)
T ss_pred HHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc---CCCchHHHhHHHHHHHhccchHH
Confidence 65566666655555554431 112333444444455555555555555554432 222 3445555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHh
Q 038490 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320 (344)
Q Consensus 242 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 320 (344)
|.+.+.+.+...+. .....+.|...|...|.+++|..+|....+-... =...++.|...|.++|++++|+..|++.+
T Consensus 339 a~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 339 AVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 55555555544322 3444445555555555555555555544443111 12234444444444455555544444444
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.83 E-value=3.8e-17 Score=155.23 Aligned_cols=297 Identities=9% Similarity=-0.038 Sum_probs=222.7
Q ss_pred hhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHH
Q 038490 8 LACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFC 87 (344)
Q Consensus 8 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (344)
.+..+.+.|++++|+..|+++... .+.+..++..+..++...|++++|++.|+++.+.. +.+...+.
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~-----------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~ 423 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQV-----------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVR 423 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 356677899999999999998443 23367788889999999999999999999988742 22333333
Q ss_pred HH------------------------------------------HHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 88 NV------------------------------------------IGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125 (344)
Q Consensus 88 ~l------------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (344)
.+ ...+...|++++|++.|++..+.. +-+...+..+.
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA 502 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLA 502 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 22 233446788899999999888876 55677788888
Q ss_pred HHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhC------------------------
Q 038490 126 NPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR------------------------ 181 (344)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------ 181 (344)
..|.+.|++++|...++++....+.+...+..+...+...++.++|...++.+...
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 89999999999999999887765545444444444444445555554444432110
Q ss_pred ---------------CCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 038490 182 ---------------RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246 (344)
Q Consensus 182 ---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 246 (344)
..+.+...+..+...+.+.|++++|+..|+++++.. +.+...+..++..+...|++++|++.+
T Consensus 583 l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 023344556667788889999999999999988753 556888999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCC--C---ChhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 038490 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK--P---NSVTYNALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
+.+.+.... +...+..+..++...|++++|.++++++...... | +...+..+...+...|++++|+..|++...
T Consensus 661 ~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 661 AKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 988876433 6677788889999999999999999999876322 1 224556667888999999999999999863
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=3.2e-18 Score=141.74 Aligned_cols=281 Identities=13% Similarity=0.051 Sum_probs=217.1
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCc-hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK-EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 124 (344)
=..+|..+...+-..|+...|++.|++..+ +.|+ ...|..|...|...+.+++|...|.+..... +....++..+
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNl 292 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNL 292 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhhccce
Confidence 344566677777777777777777777765 3444 4677778888888888888888887777653 4445677777
Q ss_pred HHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHH
Q 038490 125 LNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204 (344)
Q Consensus 125 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (344)
...|...|.++.|...+++..+..+.-...|+.|..++-..|++.+|.+.+.+..... +--..+.+.|...+...|.++
T Consensus 293 a~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 293 ACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIE 371 (966)
T ss_pred EEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccch
Confidence 7788888888888888888888777677788899999988999999999998887763 224556778888888999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHH
Q 038490 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284 (344)
Q Consensus 205 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 284 (344)
.|..+|...+.-. +.-...++.|...|-+.|++++|+..+++.++-.+. -...|+.+...|-..|+++.|++.+.+.
T Consensus 372 ~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 372 EATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred HHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 9999998876532 333667888888999999999999999998876433 4678888999999999999999999988
Q ss_pred HHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCh-hhHHHHHHH
Q 038490 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP-ISYNVILGG 337 (344)
Q Consensus 285 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~ 337 (344)
+..++. =...++.|...|...|+..+|+.-|++..+ ++||. ..|..++.+
T Consensus 449 I~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 449 IQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHC 499 (966)
T ss_pred HhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHH
Confidence 876432 346788899999999999999999999987 46655 345555543
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=1.7e-16 Score=144.49 Aligned_cols=320 Identities=13% Similarity=-0.019 Sum_probs=215.5
Q ss_pred hhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchh
Q 038490 5 SIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI 84 (344)
Q Consensus 5 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 84 (344)
...++..+.+.|++++|+.+|+.+... .+.+...+..++.++...|++++|+..++++.+.. +.+..
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~-----------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~ 118 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSL-----------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN 118 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH
Confidence 466777888889999999999886333 23366777788888888999999999999888752 44555
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHH-----------------------
Q 038490 85 IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF----------------------- 141 (344)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----------------------- 141 (344)
+..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..+.|...+
T Consensus 119 -~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r 196 (765)
T PRK10049 119 -LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVR 196 (765)
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 7778888888899999999999888875 455666666666666555555444333
Q ss_pred -----------------------HHHhccCC--CCcc-cHH----HHHHHHHhhCChhHHHHHHHHHhhCCCC-cCHhhH
Q 038490 142 -----------------------QIMEKYVS--PDAC-SYN----ILIHGCVVSRRLEDAWKVFDEMVKRRLQ-PTLVTF 190 (344)
Q Consensus 142 -----------------------~~~~~~~~--~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 190 (344)
+.+....+ |+.. .+. ..+..+...|++++|+..|+++.+.+.+ |+. ..
T Consensus 197 ~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~ 275 (765)
T PRK10049 197 LSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQ 275 (765)
T ss_pred hhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HH
Confidence 33332211 2111 111 1123445668888888888888877532 322 12
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCC
Q 038490 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKP--DGQVFASLIKGLCAVGELSLALGVKEEMVRDKI-----------EMD 257 (344)
Q Consensus 191 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~ 257 (344)
..+..++...|++++|+..|+++++.....+ .......+..++...|++++|..+++.+....+ .|+
T Consensus 276 ~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~ 355 (765)
T PRK10049 276 RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN 355 (765)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC
Confidence 2245678888888888888888765422111 134455666677888888888888888876532 122
Q ss_pred ---HHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC-hhhHHH
Q 038490 258 ---AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN-PISYNV 333 (344)
Q Consensus 258 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ 333 (344)
...+..+...+...|+.++|+.+++++....+. +...+..+...+...|++++|++.+++..+. .|+ ...+..
T Consensus 356 ~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~ 432 (765)
T PRK10049 356 DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVE 432 (765)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHH
Confidence 234556677788888888888888888776433 6677778888888888888888888888874 354 445555
Q ss_pred HHHHHhhcCC
Q 038490 334 ILGGLCKDGK 343 (344)
Q Consensus 334 ll~~~~~~g~ 343 (344)
+...+.+.|+
T Consensus 433 ~a~~al~~~~ 442 (765)
T PRK10049 433 QAWTALDLQE 442 (765)
T ss_pred HHHHHHHhCC
Confidence 5555555554
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=9.8e-16 Score=139.59 Aligned_cols=319 Identities=9% Similarity=-0.023 Sum_probs=232.9
Q ss_pred hhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHH
Q 038490 8 LACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFC 87 (344)
Q Consensus 8 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (344)
...+..-.|+.++|++++..+.+. .+.+...+..+..++...|++++|.+++++..+.. +.+...+.
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~-----------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~ 87 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVH-----------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQR 87 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 356677789999999999998431 23366679999999999999999999999988752 45567778
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCC
Q 038490 88 NVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRR 167 (344)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (344)
.++.++...|++++|+..++++.+.. +.+.. +..+..++...|+.++|...++++....+.+...+..+..++...+.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 88899999999999999999999875 66677 88899999999999999999999999888777777777777766666
Q ss_pred hhHHHHHHH----------------------------------------------HHhhC-CCCcCHh-hHH----HHHH
Q 038490 168 LEDAWKVFD----------------------------------------------EMVKR-RLQPTLV-TFG----TLIY 195 (344)
Q Consensus 168 ~~~a~~~~~----------------------------------------------~~~~~-~~~~~~~-~~~----~l~~ 195 (344)
.+.|+..++ .+.+. ...|+.. .+. ..+.
T Consensus 166 ~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 166 SAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 665554444 33322 1112211 111 1123
Q ss_pred HHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcC
Q 038490 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM---DAGIYSSLISALFKAG 272 (344)
Q Consensus 196 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g 272 (344)
++...|++++|+..|+.+++.....|+. ....+...+...|++++|+..|+++.+..... .......+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 4456788999999999977653222332 22224667888999999999999987654321 1345666777888999
Q ss_pred CcCcHHHHHHHHHHcCC-----------CCC---hhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 038490 273 RKNEFPAILKEMKERGC-----------KPN---SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL 338 (344)
Q Consensus 273 ~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 338 (344)
++++|...++.+..... .|+ ...+..+...+...|+.++|+++++++... .+-+...+..+...+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 99999999998887631 122 123455667888899999999999999875 233566777777777
Q ss_pred hhcCC
Q 038490 339 CKDGK 343 (344)
Q Consensus 339 ~~~g~ 343 (344)
...|+
T Consensus 404 ~~~g~ 408 (765)
T PRK10049 404 QARGW 408 (765)
T ss_pred HhcCC
Confidence 77665
No 21
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.79 E-value=1.6e-18 Score=139.77 Aligned_cols=262 Identities=10% Similarity=0.059 Sum_probs=80.8
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038490 52 LIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131 (344)
Q Consensus 52 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 131 (344)
.+...+.+.|++++|.++++.......-+.+...|..+...+...++++.|.+.++.+...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 34556666666666666664433220012233344444555556666666666666666554 3344555555555 566
Q ss_pred CChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCC-CCcCHhhHHHHHHHHHhhchHHHHHHHH
Q 038490 132 GKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLK 210 (344)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 210 (344)
+++++|..++...-+.. ++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|+..+
T Consensus 91 ~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666665543322 344555556666666666666666666655432 2334555556666666666777777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCC
Q 038490 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290 (344)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 290 (344)
+++++.. +.+......++..+...|+.+++.++++...+.. +.|+..+..+..++...|+.++|...|++.......
T Consensus 170 ~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 6666542 3345556666666666666666666666665543 234455666666666667777777777666665322
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHh
Q 038490 291 PNSVTYNALISGFCKEEDFEAAFTILDEMG 320 (344)
Q Consensus 291 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 320 (344)
|+.....+..++...|+.++|..+.++..
T Consensus 247 -d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 -DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp --HHHHHHHHHHHT----------------
T ss_pred -ccccccccccccccccccccccccccccc
Confidence 55666666666666777777766666554
No 22
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.78 E-value=2.3e-15 Score=126.97 Aligned_cols=285 Identities=11% Similarity=0.061 Sum_probs=208.8
Q ss_pred cccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHH--HHH
Q 038490 13 RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFC--NVI 90 (344)
Q Consensus 13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~ 90 (344)
...|++++|.+.+.......+ .....|.....+..+.|+++.|.+.+.++.+. .|+..... ...
T Consensus 95 ~~eGd~~~A~k~l~~~~~~~~-----------~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a 160 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADHAE-----------QPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRV 160 (398)
T ss_pred HhCCCHHHHHHHHHHHHhccc-----------chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHH
Confidence 346899999888876522211 01223444455558889999999999988764 45554333 336
Q ss_pred HHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcc--------cHHHHHHHH
Q 038490 91 GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC--------SYNILIHGC 162 (344)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~l~~~~ 162 (344)
..+...|+++.|.+.++.+.+.+ |-+......+...|.+.|++++|..++..+.+....+.. +|..++...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 67888899999999999998876 667788888889999999999999999998877653332 233334434
Q ss_pred HhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHH
Q 038490 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242 (344)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 242 (344)
....+.+...++++.+.+. .+.++.....+...+...|+.++|...+++.++. +++.... ++.+....++.+++
T Consensus 240 ~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~a 313 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQL 313 (398)
T ss_pred HHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHH
Confidence 4445566666666665443 3446777778888889999999999999887763 4555332 23333456888999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 038490 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
.+..+...+..+. |+..+..+...|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 314 l~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 314 EKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999988887655 7778888899999999999999999998886 58888888888999999999999999887754
No 23
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.77 E-value=4.1e-18 Score=137.42 Aligned_cols=250 Identities=15% Similarity=0.155 Sum_probs=110.4
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhC
Q 038490 88 NVIGFYGRARLLERALQMFDEMSSFN-VQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSR 166 (344)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (344)
.+...+.+.|++++|.++++...... .+.+...|..+.......++++.|...++++...++.+...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 56788889999999999996554433 244556666777778888999999999999988776667777777777 7889
Q ss_pred ChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 038490 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246 (344)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 246 (344)
++++|.+++++..+.. ++...+...+..+...++++++..+++.+......+.+...|..+...+.+.|+.++|.+.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999988876653 45666777888888999999999999987765455667888888888999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC
Q 038490 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326 (344)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 326 (344)
++..+..+. |......++..+...|+.+++..++....... +.|+..+..+..++...|+.++|+.++++..+.. +.
T Consensus 170 ~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 999988654 68888889999999999999888888887764 3466778888899999999999999999988752 33
Q ss_pred ChhhHHHHHHHHhhcCC
Q 038490 327 NPISYNVILGGLCKDGK 343 (344)
Q Consensus 327 ~~~~~~~ll~~~~~~g~ 343 (344)
|+.....+..++...|+
T Consensus 247 d~~~~~~~a~~l~~~g~ 263 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGR 263 (280)
T ss_dssp -HHHHHHHHHHHT----
T ss_pred ccccccccccccccccc
Confidence 78888888888888886
No 24
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.77 E-value=2.7e-15 Score=127.16 Aligned_cols=294 Identities=12% Similarity=-0.008 Sum_probs=209.6
Q ss_pred hhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchh--HH
Q 038490 9 ACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI--IF 86 (344)
Q Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~ 86 (344)
+.+....|+++.|.+.+.......+ -....+-....+..+.|+++.|.+.+.+..+. .|+.. ..
T Consensus 91 glla~~~g~~~~A~~~l~~~~~~~~-----------~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~ 156 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNADHAA-----------EPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVE 156 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhcCC-----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHH
Confidence 3445567999999999977633221 13444555667888889999999999998764 34543 33
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHH-HHH---HH
Q 038490 87 CNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNI-LIH---GC 162 (344)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-l~~---~~ 162 (344)
......+...|+++.|.+.++.+.+.+ |-+..+...+...+...|+++.|.+.+..+.+.+..+...+.. -.. ..
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 345778888999999999999999886 6677888899999999999999999999998876554444421 111 12
Q ss_pred HhhCChhHHHHHHHHHhhCCC---CcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhc
Q 038490 163 VVSRRLEDAWKVFDEMVKRRL---QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV---FASLIKGLCAV 236 (344)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~ 236 (344)
...+..+...+.+..+.+... +.+...+..+...+...|+.++|.+.+++.++.. |+... ...........
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCC
Confidence 333333334445555554421 1367778888888999999999999999988753 33321 11111122345
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHH
Q 038490 237 GELSLALGVKEEMVRDKIEMDA--GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314 (344)
Q Consensus 237 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 314 (344)
++.+.+.+.++...+..+. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+
T Consensus 313 ~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred CChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7788888888888876443 55 66778889999999999999999964444446888888899999999999999999
Q ss_pred HHHHHhh
Q 038490 315 ILDEMGD 321 (344)
Q Consensus 315 ~~~~~~~ 321 (344)
++++...
T Consensus 392 ~~~~~l~ 398 (409)
T TIGR00540 392 MRQDSLG 398 (409)
T ss_pred HHHHHHH
Confidence 9988643
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=9.5e-15 Score=131.36 Aligned_cols=180 Identities=12% Similarity=-0.040 Sum_probs=102.1
Q ss_pred HHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhc
Q 038490 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN----VKPDGQVFASLIKGLCAV 236 (344)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~ 236 (344)
++...|++.++++.|+.+...|.+....+-..+.++|...+++++|..+++.+....+ .+++......|..++...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 4445566666666666666665544455555666666666777777777766655432 122333345566666667
Q ss_pred CChHHHHHHHHHHHHCCC-----------CC--CH-HHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038490 237 GELSLALGVKEEMVRDKI-----------EM--DA-GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302 (344)
Q Consensus 237 ~~~~~a~~~~~~~~~~~~-----------~~--~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 302 (344)
+++++|..+++.+.+..+ .| |- ..+..++..+...|+..+|++.++++....+. |......+...
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v 459 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASI 459 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 777777777776665311 11 11 12333455566667777777777776655432 66666666666
Q ss_pred HhccCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHhhcCC
Q 038490 303 FCKEEDFEAAFTILDEMGDKGCKA-NPISYNVILGGLCKDGK 343 (344)
Q Consensus 303 ~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~ 343 (344)
+...|.+.+|++.++..... .| +..+......++...|+
T Consensus 460 ~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e 499 (822)
T PRK14574 460 YLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQE 499 (822)
T ss_pred HHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhh
Confidence 66777777777777555443 33 33444444444444443
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=1.2e-14 Score=133.33 Aligned_cols=300 Identities=9% Similarity=-0.017 Sum_probs=226.4
Q ss_pred hhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCC---chHHHHH------------
Q 038490 5 SIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKM---FDEMQQI------------ 69 (344)
Q Consensus 5 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~------------ 69 (344)
...+.....++|+.++|.++|+...+.+. .-..+...-..++..|.+.+. ..++..+
T Consensus 379 l~q~~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 450 (987)
T PRK09782 379 LDQLTWQLMQNGQSREAADLLLQRYPFQG--------DARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQW 450 (987)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhcCCCc--------ccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHH
Confidence 34566778889999999999999866321 122244455567777777655 2233222
Q ss_pred ----------HHHhhhcCCC-CC--chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 038490 70 ----------LHQLKHDTRI-VP--KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136 (344)
Q Consensus 70 ----------~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 136 (344)
.+......+. ++ +...|..+..++.. ++.++|...+....... |+......+...+...|++++
T Consensus 451 ~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~ee 527 (987)
T PRK09782 451 QSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYAT 527 (987)
T ss_pred HhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHH
Confidence 2222222122 33 56677778877776 88889999888887763 555444445556678999999
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 038490 137 MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216 (344)
Q Consensus 137 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 216 (344)
|...++++... +++...+..+...+.+.|+.++|...+++..+.+ +.....+..+.......|++++|...+++.++.
T Consensus 528 Ai~~~rka~~~-~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l 605 (987)
T PRK09782 528 ALAAWQKISLH-DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI 605 (987)
T ss_pred HHHHHHHHhcc-CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999998665 3444556677888899999999999999998874 223333333333444569999999999998865
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhH
Q 038490 217 YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296 (344)
Q Consensus 217 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 296 (344)
.|+...+..+..++.+.|++++|+..+++.....+. +...++.+..++...|++++|+..+++..+..+. +...+
T Consensus 606 ---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~ 680 (987)
T PRK09782 606 ---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALI 680 (987)
T ss_pred ---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 467888999999999999999999999999998755 7888899999999999999999999999987543 67788
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhC
Q 038490 297 NALISGFCKEEDFEAAFTILDEMGDK 322 (344)
Q Consensus 297 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 322 (344)
..+..++...|++++|+..+++..+.
T Consensus 681 ~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 681 RQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 89999999999999999999999874
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=5.8e-15 Score=135.35 Aligned_cols=263 Identities=11% Similarity=-0.004 Sum_probs=211.8
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (344)
+...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++... +|+...+..+.
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la 549 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAA 549 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHH
Confidence 67788888888887 8999999988887764 466554444566667899999999999998664 45555667778
Q ss_pred HHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHH
Q 038490 126 NPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205 (344)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (344)
.++.+.|+.++|...++...+..+.....+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++
T Consensus 550 ~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 550 NTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHH
Confidence 88999999999999999998866544444444444455669999999999999876 4567888889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHH
Q 038490 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285 (344)
Q Consensus 206 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 285 (344)
|+..+++.+... +.+...++.+...+...|++++|+..+++..+..+. +...+..+..++...|++++|+..+++..
T Consensus 628 A~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 628 AVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999988753 556778888888999999999999999999998665 78899999999999999999999999999
Q ss_pred HcCCCCCh-hhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 038490 286 ERGCKPNS-VTYNALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 286 ~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
+.. |+. .+.........+..+++.+.+-+++...
T Consensus 705 ~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 705 DDI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred hcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 874 433 4444555666677777888777776654
No 28
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=2.7e-15 Score=115.09 Aligned_cols=292 Identities=15% Similarity=0.118 Sum_probs=219.5
Q ss_pred cccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch--hHHHHHH
Q 038490 13 RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE--IIFCNVI 90 (344)
Q Consensus 13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~ 90 (344)
.-.+++++|.++|-.+.+. .+.+..+..++...|.+.|..++|+++.+.+..+.+...+. .....|.
T Consensus 46 LLs~Q~dKAvdlF~e~l~~-----------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQE-----------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred HhhcCcchHHHHHHHHHhc-----------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3467899999999998443 33377788889999999999999999999998864443333 3345678
Q ss_pred HHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCC-----cccHHHHHHHHHhh
Q 038490 91 GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPD-----ACSYNILIHGCVVS 165 (344)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~ 165 (344)
.-|-..|-++.|+.+|..+.+.+ .--......|+..|-...+|++|..+-+++...++.+ ...|--+...+...
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 88899999999999999999866 5556788899999999999999999999887755411 12234455555667
Q ss_pred CChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 038490 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245 (344)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 245 (344)
.+++.|..++.+..+.+.+ .+..--.+.+.....|+++.|++.++.+.++ +..--+.+...|..+|.+.|+.++....
T Consensus 194 ~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 194 SDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 8899999999999887433 2333334557788899999999999998776 2233356788899999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhc---cCCHHHHHHHHHHHhhC
Q 038490 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK---EEDFEAAFTILDEMGDK 322 (344)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 322 (344)
+..+.+... ....-..+...-......+.|...+.+-..+ +|+...+..++..... .|...+.+..+++|...
T Consensus 272 L~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 272 LRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 999988743 3344445555555555566777766665555 6899999999987653 45677788888888643
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.74 E-value=2.1e-14 Score=121.09 Aligned_cols=270 Identities=8% Similarity=0.079 Sum_probs=209.4
Q ss_pred cCCchHHHHHHHHhhhcCCCCCchhHHHH-HHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHhcCChHH
Q 038490 60 AKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN--TLLNPKLTCGKLDR 136 (344)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~ 136 (344)
.|+++.|.+.+....+. .+++..+.. ...+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 59999999888876553 223333333 345558999999999999999875 45543333 44678899999999
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCH-------hhHHHHHHHHHhhchHHHHHHH
Q 038490 137 MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL-------VTFGTLIYGLCLELRVDEALKL 209 (344)
Q Consensus 137 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 209 (344)
|...++++.+..|.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 172 Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 172 ARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999998888999999999999999999999999999988655322 1233334333344455666666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCC
Q 038490 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289 (344)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 289 (344)
++.+.+. .+.++.....+...+...|+.++|.+++++..+. .++.... ++.+....++.+++....+...+..+
T Consensus 252 w~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 252 WKNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 6664332 3567888899999999999999999999999885 4455322 33444556999999999999988754
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCC
Q 038490 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343 (344)
Q Consensus 290 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 343 (344)
. |...+..+...+.+.+++++|.+.|+...+. .|+..++..+..++.+.|+
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHK 376 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCC
Confidence 3 6677888999999999999999999999985 6999999999999988886
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.73 E-value=8.7e-14 Score=125.25 Aligned_cols=159 Identities=11% Similarity=0.061 Sum_probs=80.2
Q ss_pred hhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHH
Q 038490 8 LACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFC 87 (344)
Q Consensus 8 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (344)
-+.+..++|+++.|+..|+++.+..+ .+......++..+...|+.++|+..+++.... .+.......
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P-----------~~~~av~dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~ll 106 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGP-----------LQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLA 106 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCc-----------cchhhHHHHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHH
Confidence 34455566666666666666533221 12111115555555666666666666665421 122222333
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCC
Q 038490 88 NVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRR 167 (344)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (344)
.+...+...|++++|+++|+++.+.. +.+...+..++..+...++.++|+..++++....+ +...+..++..+...++
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDP-TVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-chHHHHHHHHHHHhcch
Confidence 33445556666666666666666654 44455555555666666666666666666654432 22223222222322334
Q ss_pred hhHHHHHHHHHhhC
Q 038490 168 LEDAWKVFDEMVKR 181 (344)
Q Consensus 168 ~~~a~~~~~~~~~~ 181 (344)
..+|++.++++.+.
T Consensus 185 ~~~AL~~~ekll~~ 198 (822)
T PRK14574 185 NYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHHHHh
Confidence 43455555555554
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.73 E-value=6.3e-14 Score=118.90 Aligned_cols=282 Identities=9% Similarity=-0.008 Sum_probs=206.5
Q ss_pred HhcCCchHHHHHHHHhhhcCCCCCchh-HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 038490 58 GRAKMFDEMQQILHQLKHDTRIVPKEI-IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136 (344)
Q Consensus 58 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 136 (344)
...|+++.|.+.+.+..+. .|+.. .+-....+..+.|+.+.|.+.+.+..+....+...+.......+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 4569999999999887664 35543 3444567788899999999999998875422223444556888899999999
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHH---HhhchHHHHHHHHHHH
Q 038490 137 MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL---CLELRVDEALKLKEDI 213 (344)
Q Consensus 137 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~ 213 (344)
|...++.+.+..|.+......+...+...|++++|.+.+..+.+.+..++......-..++ ...+..+++...+..+
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999988888899999999999999999999999999987543332212112222 3333444444455555
Q ss_pred HHhcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCcCcHHHHHHHHHHcCCC
Q 038490 214 MRVYN--VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY-SSLISALFKAGRKNEFPAILKEMKERGCK 290 (344)
Q Consensus 214 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 290 (344)
.+... .+.+...+..+...+...|+.++|.+++++..+..++.....+ ..........++.+.+.+.++...+....
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 54321 1247888999999999999999999999999997544221111 11222223456777888888888776322
Q ss_pred CCh--hhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCC
Q 038490 291 PNS--VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343 (344)
Q Consensus 291 p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 343 (344)
|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+
T Consensus 332 -~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~ 385 (409)
T TIGR00540 332 -KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGD 385 (409)
T ss_pred -ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCC
Confidence 44 55678899999999999999999965554457999999999999998886
No 32
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=1.1e-13 Score=106.43 Aligned_cols=274 Identities=15% Similarity=0.087 Sum_probs=212.9
Q ss_pred HhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCC-C--HHHHHHHHHHHHhcCCh
Q 038490 58 GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQM-T--VKFFNTLLNPKLTCGKL 134 (344)
Q Consensus 58 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~~~~ 134 (344)
.-.++.++|.++|-+|.+. -+.+..+.-+|.+.|.+.|.++.|+++.+.+.++.--+ + ......|.+-|...|-+
T Consensus 46 LLs~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HhhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 3457899999999999884 24455677789999999999999999999998742111 1 23455677788899999
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCH----hhHHHHHHHHHhhchHHHHHHHH
Q 038490 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL----VTFGTLIYGLCLELRVDEALKLK 210 (344)
Q Consensus 135 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~ 210 (344)
|.|+.+|..+.+.+..-..+...|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|...+
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999999877777788899999999999999999999999887554432 23445555566678999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCC
Q 038490 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290 (344)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 290 (344)
.+.++.. +..+..-..+.+.....|+++.|.+.++.+.+.++..-..+...|..+|...|+.++....+.++.+..
T Consensus 204 ~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 204 KKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 9988763 344445556677888999999999999999999877778889999999999999999999999998864
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHh
Q 038490 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339 (344)
Q Consensus 291 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 339 (344)
+....-..+...-....-.+.|..++.+-..+ +|+...+..|+..-.
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 34444444555444444556666665555543 589999988887544
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=7.3e-15 Score=123.03 Aligned_cols=285 Identities=13% Similarity=0.054 Sum_probs=206.9
Q ss_pred CCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCC-CchhHHHHHHHHHH
Q 038490 16 KDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV-PKEIIFCNVIGFYG 94 (344)
Q Consensus 16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 94 (344)
-+.++|+..|..+ +. .......+...+..+|...+++++|.++|+.+.+..... -+..+|.+.+=
T Consensus 333 y~~~~A~~~~~kl-p~----------h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW--- 398 (638)
T KOG1126|consen 333 YNCREALNLFEKL-PS----------HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW--- 398 (638)
T ss_pred HHHHHHHHHHHhh-HH----------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH---
Confidence 3567788888774 22 122344666777888888888888888888887653222 23455555442
Q ss_pred hcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHH
Q 038490 95 RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKV 174 (344)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 174 (344)
...+.-+---+-+.+.+.. +-.+.+|..+.++|.-+++.+.|++.|++..+.++....+|+.+..-+....++|.|+..
T Consensus 399 HLq~~v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~ 477 (638)
T KOG1126|consen 399 HLQDEVALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKS 477 (638)
T ss_pred HHHhhHHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHH
Confidence 2222222223334445444 566788999999999999999999999999888877888888888888888889999999
Q ss_pred HHHHhhCCCCcCHhhHHH---HHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038490 175 FDEMVKRRLQPTLVTFGT---LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251 (344)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 251 (344)
|+..+.. |...|++ +...|.+.++++.|+-.|+.+.+-. +.+.+....+...+-+.|+.++|++++++...
T Consensus 478 fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 478 FRKALGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred HHhhhcC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 9887644 5555554 4567888899999998888876532 34566667777778888999999999999888
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCC
Q 038490 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323 (344)
Q Consensus 252 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 323 (344)
.+.+ |+..--.-+..+...++.++|+..++++++.-++ +...|..+...|.+.|+.+.|+.-|.-+.+..
T Consensus 552 ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 552 LDPK-NPLCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred cCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 7766 6666556677778888899999999998886322 55667777788889999999988888877653
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=1.7e-14 Score=120.95 Aligned_cols=270 Identities=12% Similarity=0.035 Sum_probs=211.4
Q ss_pred CCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChHHHH
Q 038490 61 KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFN--VQMTVKFFNTLLNPKLTCGKLDRMK 138 (344)
Q Consensus 61 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 138 (344)
-+..+|...|..+... +.-+..+...+.++|...+++++|+++|+.+.+.. ..-+..+|.+.+--+-+ +-++
T Consensus 333 y~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~L 406 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVAL 406 (638)
T ss_pred HHHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHH
Confidence 4678899999996553 34445677789999999999999999999998764 12256677777653322 1222
Q ss_pred H-HHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhc
Q 038490 139 E-LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVY 217 (344)
Q Consensus 139 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 217 (344)
. +-+.+.+..+..+.+|-++..+|.-+++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+..+...
T Consensus 407 s~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 407 SYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 2 334555666678899999999999999999999999999887322 77889988888999999999999999866321
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHH
Q 038490 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN 297 (344)
Q Consensus 218 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 297 (344)
+-+-..|..+.-.|.+.++++.|+-.|+...+-++. +.+....+...+.+.|+.++|++++++......+ |+..--
T Consensus 486 --~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 486 --PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred --chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 122334555677889999999999999999998766 8888888999999999999999999999887655 555555
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHhhcCC
Q 038490 298 ALISGFCKEEDFEAAFTILDEMGDKGCKA-NPISYNVILGGLCKDGK 343 (344)
Q Consensus 298 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~ 343 (344)
.-+..+...++.++|+..++++++. .| +...+..+.+.|.+.|+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGN 606 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHcc
Confidence 5667788899999999999999984 55 45567777778877765
No 35
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.66 E-value=1.3e-12 Score=103.49 Aligned_cols=285 Identities=14% Similarity=0.068 Sum_probs=181.5
Q ss_pred cCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHH
Q 038490 15 QKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYG 94 (344)
Q Consensus 15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 94 (344)
.|+|.+|.++..+-....+ .....|..-+.+..+.|+.+.+-+++.+.-+.. -.++....-+..+...
T Consensus 97 eG~~~qAEkl~~rnae~~e-----------~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll 164 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-----------QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLL 164 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-----------chHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHH
Confidence 5777777777766433221 134455555666677777777777777766531 1234445555566667
Q ss_pred hcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCC--------cccHHHHHHHHHhhC
Q 038490 95 RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPD--------ACSYNILIHGCVVSR 166 (344)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~ 166 (344)
..|+.+.|..-++.+.+.+ +..+.+.....++|.+.|++.....++..+.+.+..+ ..+|..+++-....+
T Consensus 165 ~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 165 NRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred hCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 7777777777777777766 5566677777777777777777777777776665522 234555555555555
Q ss_pred ChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 038490 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246 (344)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 246 (344)
..+.-...+++.... .+.++..-..++.-+.+.|+.++|.++..+.++. +..|. ...+ -.+.+.++.+.-.+..
T Consensus 244 ~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~-~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 244 GSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRL-IPRLRPGDPEPLIKAA 317 (400)
T ss_pred cchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHH-HhhcCCCCchHHHHHH
Confidence 555555566555443 3334555556666677777777777777776665 23333 1111 1334566666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 038490 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
+.-.+..+. ++..+..|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.+..++...
T Consensus 318 e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 318 EKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 665554333 5567777778888888888888888866654 57778888888888888888888877777664
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.2e-12 Score=104.61 Aligned_cols=288 Identities=16% Similarity=0.190 Sum_probs=203.3
Q ss_pred CcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038490 44 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT 123 (344)
Q Consensus 44 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 123 (344)
+.+..+|..+|.++++--..++|.+++++..... .+.+..++|.+|.+-+-. ...+++.+|....+.||..|+|+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHH
Confidence 3467889999999999999999999999988763 577889999988764432 23788899999989999999999
Q ss_pred HHHHHHhcCChHHH----HHHHHHHhccCC-CCcccHHHHHHHHHhhCChhH-HHHHHHHHhhC----CCCc----CHhh
Q 038490 124 LLNPKLTCGKLDRM----KELFQIMEKYVS-PDACSYNILIHGCVVSRRLED-AWKVFDEMVKR----RLQP----TLVT 189 (344)
Q Consensus 124 l~~~~~~~~~~~~a----~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~~----~~~~ 189 (344)
++.+..+.|+++.| .+++.+|++.|. |...+|..+|..+.+.++..+ |..++.++... ..+| |...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 99999999987654 567788888888 999999999999988888744 55555555432 2222 4456
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHhcC---CCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 038490 190 FGTLIYGLCLELRVDEALKLKEDIMRVYN---VKPD---GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263 (344)
Q Consensus 190 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 263 (344)
|...|..|.+..+.+-|.++..-+....+ +.|+ ...|..+....++....+.-...|+.|.-.-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 67778888888888777776654321111 2222 23455666666777777777777887777666677777777
Q ss_pred HHHHHHHcCCcCcHHHHHHHHHHcC-------------------CCCC--------------------------------
Q 038490 264 LISALFKAGRKNEFPAILKEMKERG-------------------CKPN-------------------------------- 292 (344)
Q Consensus 264 l~~~~~~~g~~~~a~~~~~~~~~~~-------------------~~p~-------------------------------- 292 (344)
++++....|.++-.-+++..++..| +.|+
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 7777777777776666666665544 1121
Q ss_pred ---hhhHHHHHHHHhccCCHHHHHHHHHHHhhC-CCCCChhhHHHHHH
Q 038490 293 ---SVTYNALISGFCKEEDFEAAFTILDEMGDK-GCKANPISYNVILG 336 (344)
Q Consensus 293 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~ 336 (344)
....+...-.+.+.|..++|.+++..+.+. +--|-....++|+.
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~E 566 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAE 566 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHH
Confidence 112355555667889999999999888543 33344445554443
No 37
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=9.5e-13 Score=105.20 Aligned_cols=307 Identities=14% Similarity=0.164 Sum_probs=218.1
Q ss_pred CCchhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCC
Q 038490 2 PTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVP 81 (344)
Q Consensus 2 p~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 81 (344)
|.|++.++..+++--+.++|..++++..... .+.+..++|.+|.+-.-.. -.+++.+|... .+.|
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k----------~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisq-km~P 271 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAK----------GKVYREAFNGLIGASSYSV----GKKLVAEMISQ-KMTP 271 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhh----------heeeHHhhhhhhhHHHhhc----cHHHHHHHHHh-hcCC
Confidence 6788889999999999999999998864332 4558889999987754333 27889999887 5899
Q ss_pred chhHHHHHHHHHHhcccHHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHhcc---------
Q 038490 82 KEIIFCNVIGFYGRARLLER----ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR-MKELFQIMEKY--------- 147 (344)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~--------- 147 (344)
|..|+|+++++.++.|+++. |.+++.+|.+.|+.|...+|..+|..+.+.++..+ +..++.++...
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 99999999999999998764 57788889999999999999999999998887644 44455444322
Q ss_pred CCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCC----CCcC---HhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCC
Q 038490 148 VSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR----LQPT---LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK 220 (344)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 220 (344)
.+.+...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....|.....+.-...|..+... -+-
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~-~y~ 430 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS-AYF 430 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-eec
Confidence 11344556777888888888888888776554321 2222 233556666777777778877777776543 445
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----------------------------------------------
Q 038490 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI---------------------------------------------- 254 (344)
Q Consensus 221 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------------------------- 254 (344)
|+..+...++++..-.|.++-.-+++..+...|.
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666655555555444433221
Q ss_pred --------CCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcC-CCCChhhHH---HHHHHHhccCCHHHHHHHHHHHhhC
Q 038490 255 --------EMDAGIYSSLISALFKAGRKNEFPAILKEMKERG-CKPNSVTYN---ALISGFCKEEDFEAAFTILDEMGDK 322 (344)
Q Consensus 255 --------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~ 322 (344)
+......+.++-.+.+.|+.++|.+++.-+.+.+ --|-....| .++..-.+.++...|...++-|...
T Consensus 511 ~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 511 QPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred hHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 1233345667777889999999999999996553 233334444 5566677888999999999988765
Q ss_pred CC
Q 038490 323 GC 324 (344)
Q Consensus 323 ~~ 324 (344)
+.
T Consensus 591 n~ 592 (625)
T KOG4422|consen 591 NL 592 (625)
T ss_pred Cc
Confidence 43
No 38
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=3.1e-12 Score=101.37 Aligned_cols=273 Identities=10% Similarity=0.064 Sum_probs=223.1
Q ss_pred cCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 038490 60 AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139 (344)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 139 (344)
.|+|.+|+++..+-.+.. +-....|..-+.+.-+.|+.+.+-+++.+..+..-.++....-+..+.....|+.+.|..
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 599999999999977652 222345666678888999999999999999886336677788888899999999999999
Q ss_pred HHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCH-------hhHHHHHHHHHhhchHHHHHHHHHH
Q 038490 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL-------VTFGTLIYGLCLELRVDEALKLKED 212 (344)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 212 (344)
-++++....+.++.......++|.+.|++.....++..+.+.|.--++ .+|..+++-....+..+.-...+++
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 999999988889999999999999999999999999999999876554 4566777766666666666667776
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCC
Q 038490 213 IMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292 (344)
Q Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 292 (344)
.-+ ..+.++..-..++.-+.+.|+.++|.++.++..+.+.+|+ -...-.+.+.++.+.-++..+.-.+.... +
T Consensus 255 ~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~ 327 (400)
T COG3071 255 QPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-D 327 (400)
T ss_pred ccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence 544 3456677788889999999999999999999999877665 22234466778888888888776665332 5
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCC
Q 038490 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343 (344)
Q Consensus 293 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 343 (344)
+..+.+|...|.+.+.|.+|...|+...+ ..|+..+|..+-.++.+.|+
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGE 376 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCC
Confidence 67889999999999999999999998777 47999999999999999886
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.63 E-value=1.4e-12 Score=113.03 Aligned_cols=319 Identities=14% Similarity=0.056 Sum_probs=191.7
Q ss_pred hhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHH
Q 038490 10 CLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNV 89 (344)
Q Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 89 (344)
..+.-.|+.++|..++.++..+ .+.+...|..|...|-+.|+.+++...+-..-.. .+-|...|..+
T Consensus 147 N~lfarg~~eeA~~i~~EvIkq-----------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~l 213 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQ-----------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRL 213 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHh-----------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHH
Confidence 3333447777777777776433 3336677777777777777777777665544432 24455667777
Q ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCc-ccH----HHHHHHHHh
Q 038490 90 IGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDA-CSY----NILIHGCVV 164 (344)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~----~~l~~~~~~ 164 (344)
.....+.|.++.|.-.|.+.++.. +++...+-.-...|-+.|+...|...|.++.+..+|.. .-+ ...+..+..
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777665 55555555556666677777777777666665544221 111 122334444
Q ss_pred hCChhHHHHHHHHHhhC-CCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHH-----------------------------
Q 038490 165 SRRLEDAWKVFDEMVKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM----------------------------- 214 (344)
Q Consensus 165 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------------------------- 214 (344)
.++.+.|.+.++..... +-..+...++.++..+.+...++.+........
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 45445555555554431 112223333344444444444444433332221
Q ss_pred -------------------------------HhcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 038490 215 -------------------------------RVYN--VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261 (344)
Q Consensus 215 -------------------------------~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 261 (344)
.... +.-+...|..+..++...|++.+|..++..+......-+...|
T Consensus 373 ~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 373 ELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 1112 2224556777788888888888888888888876554467788
Q ss_pred HHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHh--------hCCCCCChhhHHH
Q 038490 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG--------DKGCKANPISYNV 333 (344)
Q Consensus 262 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~p~~~~~~~ 333 (344)
-.+..+|...|..++|.+.|+......+. +...--.|...+.+.|+.++|.+.++.+. ..++.|+....-.
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~ 531 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH 531 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence 88888888888888888888888776322 34444556667778888888888888854 2234455544444
Q ss_pred HHHHHhhcCC
Q 038490 334 ILGGLCKDGK 343 (344)
Q Consensus 334 ll~~~~~~g~ 343 (344)
....+.+.|+
T Consensus 532 r~d~l~~~gk 541 (895)
T KOG2076|consen 532 RCDILFQVGK 541 (895)
T ss_pred HHHHHHHhhh
Confidence 4444444443
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=99.63 E-value=2.2e-12 Score=113.66 Aligned_cols=266 Identities=11% Similarity=0.055 Sum_probs=188.0
Q ss_pred chhhHHHHHHHHHh-----cCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHH---------hcccHHHHHHHHHHHHh
Q 038490 46 NLLHYDLIITKLGR-----AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYG---------RARLLERALQMFDEMSS 111 (344)
Q Consensus 46 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 111 (344)
+..+|...+.+... .+.+++|.+.|++..+.. +.+...+..+..++. ..+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 55556566655422 234678999999988742 233455655555443 23458899999999998
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHH
Q 038490 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191 (344)
Q Consensus 112 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 191 (344)
.+ +.+...+..+...+...|++++|...+++..+..+.+...+..+...+...|++++|...+++..+.+.. +...+.
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 86 6678888888888999999999999999999888878888888999999999999999999999887433 222333
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 038490 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKP-DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270 (344)
Q Consensus 192 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 270 (344)
.++..+...|++++|...++++++.. +| +...+..+..++...|+.++|...+.++...... +....+.+...|..
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 487 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhc
Confidence 34445667889999999998876542 34 4555777778888999999999999887765322 44455666667777
Q ss_pred cCCcCcHHHHHHHHHHcC-CCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCC
Q 038490 271 AGRKNEFPAILKEMKERG-CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323 (344)
Q Consensus 271 ~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 323 (344)
.|+ +|...++.+.+.. ..|....+ +-..+.-.|+.+.+..+ +++.+.|
T Consensus 488 ~g~--~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NSE--RALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cHH--HHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 774 7888777765531 12222222 44455566777766666 7777653
No 41
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.62 E-value=7.6e-13 Score=104.08 Aligned_cols=200 Identities=12% Similarity=0.015 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 038490 83 EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGC 162 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (344)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++.....+.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3445555566666666666666666665543 334455555555566666666666666555554444444555555555
Q ss_pred HhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHH
Q 038490 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242 (344)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 242 (344)
...|++++|.+.+++..... ........+..+..++...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~-----------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDP-----------------------------------LYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHcccHHHHHHHHHHHHhcc-----------------------------------ccccchHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555554431 1111222333344444445555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHh
Q 038490 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320 (344)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 320 (344)
...+++..+.... +...+..+...+...|++++|...+++.... .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 155 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 155 EKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555554443222 3344444455555555555555555554443 12233334444444445555555555544443
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.3e-12 Score=103.90 Aligned_cols=289 Identities=13% Similarity=0.058 Sum_probs=199.4
Q ss_pred hhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHH
Q 038490 8 LACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFC 87 (344)
Q Consensus 8 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (344)
.+.++.+.|....|.+.|..... ..|..-.+|..|...... .+ +...+.. |.+.+.....
T Consensus 170 ~Gvv~k~~~~~s~A~~sfv~~v~-----------~~P~~W~AWleL~~lit~---~e----~~~~l~~--~l~~~~h~M~ 229 (559)
T KOG1155|consen 170 YGVVLKELGLLSLAIDSFVEVVN-----------RYPWFWSAWLELSELITD---IE----ILSILVV--GLPSDMHWMK 229 (559)
T ss_pred HHHHHHhhchHHHHHHHHHHHHh-----------cCCcchHHHHHHHHhhch---HH----HHHHHHh--cCcccchHHH
Confidence 35566778888999999987632 223344445444443321 11 1111111 1111111111
Q ss_pred --HHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC----------------
Q 038490 88 --NVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS---------------- 149 (344)
Q Consensus 88 --~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------- 149 (344)
-+..++....+.+++.+-.+.+...|++-+...-+....+.-...|+++|+.+|+++.+..|
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 13344444455555555555555555444444333344444445555555555555555443
Q ss_pred ------------------CCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHH
Q 038490 150 ------------------PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211 (344)
Q Consensus 150 ------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 211 (344)
-.+.|+-++.+.|+-.++.++|...|++..+.+.. ....|+.+..-|....+...|+.-++
T Consensus 310 ~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 310 NDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 22334445556677788899999999999987533 56778888899999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCC
Q 038490 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291 (344)
Q Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 291 (344)
++++-. +.|-..|-.+.++|.-.+...=|+-.|++.....+. |...|.+|..+|.+.++.++|+..|.+....|-.
T Consensus 389 rAvdi~--p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt- 464 (559)
T KOG1155|consen 389 RAVDIN--PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT- 464 (559)
T ss_pred HHHhcC--chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-
Confidence 987643 667889999999999999999999999999988655 8999999999999999999999999999887643
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 038490 292 NSVTYNALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
+...+..|...|-+.++..+|...|++.++
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 567899999999999999999999988765
No 43
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.62 E-value=4.2e-13 Score=117.14 Aligned_cols=231 Identities=14% Similarity=0.085 Sum_probs=150.9
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccC----CCCcc------cHHHHHHHHHhhCChhHHHHHHHHHhhC
Q 038490 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV----SPDAC------SYNILIHGCVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 112 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (344)
.+-++.+...|.+...+...|+++.|...|....... .++.. +-..+.+..-..++++.|.+.|..+.+.
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3445677888888888888888888888888776541 12221 1222334444444555555555554443
Q ss_pred C---------------------------------CCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038490 182 R---------------------------------LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228 (344)
Q Consensus 182 ~---------------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 228 (344)
. ...++..++.+...+.+...+..|..-|..+.+.....+|..+.-+
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 1 1112233333333444555555555545444444333455555555
Q ss_pred HHHHHHh------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhH
Q 038490 229 LIKGLCA------------VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296 (344)
Q Consensus 229 l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 296 (344)
|...|.. .+..++|+++|.++++..+. |...-|-+.-+++..|++.+|..+|...++.... ...+|
T Consensus 606 LGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~ 683 (1018)
T KOG2002|consen 606 LGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVW 683 (1018)
T ss_pred hhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCcee
Confidence 5554432 23467888899988888765 8888888888899999999999999999887542 56778
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHhhcCCC
Q 038490 297 NALISGFCKEEDFEAAFTILDEMGDK-GCKANPISYNVILGGLCKDGKC 344 (344)
Q Consensus 297 ~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~ 344 (344)
-.+.++|..+|++..|+++|+...+. .-.-+......|-+++-+.|++
T Consensus 684 lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 684 LNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 88999999999999999999987753 3344777888888888887753
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.6e-12 Score=102.84 Aligned_cols=288 Identities=12% Similarity=0.062 Sum_probs=209.7
Q ss_pred CCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCC-CchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHH
Q 038490 43 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV-PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121 (344)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 121 (344)
++.+...-+....+.-...++++|+.+|+++.+..... .|..+|..++-.-....... -+-......+ +-.+.|+
T Consensus 258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs---~LA~~v~~id-KyR~ETC 333 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS---YLAQNVSNID-KYRPETC 333 (559)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH---HHHHHHHHhc-cCCccce
Confidence 33344444444555556667777777777776653222 23456665553322211111 1111111222 3344566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhc
Q 038490 122 NTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201 (344)
Q Consensus 122 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 201 (344)
..+.+-|+-.++.++|...|++..+.++.....|+.+..-|....+...|.+-++...+-+ +.|-..|-.+.++|.-.+
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhc
Confidence 6777778888999999999999999988889999999999999999999999999999874 448888999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHH
Q 038490 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281 (344)
Q Consensus 202 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 281 (344)
...=|+-.|++...-. +.|...|.+|.++|.+.++.++|++.|......|-. +...+..|...|-+.++.++|...|
T Consensus 413 Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 413 MHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred chHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999977542 557899999999999999999999999999988744 7789999999999999999999999
Q ss_pred HHHHHc----CCC-C-ChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhh
Q 038490 282 KEMKER----GCK-P-NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340 (344)
Q Consensus 282 ~~~~~~----~~~-p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 340 (344)
++..+. |.. | ......-|..-+.+.+++++|..+.....+. .+...--+.|++.+.+
T Consensus 490 ek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 490 EKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKALLREIRK 552 (559)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHHHHHHHH
Confidence 887653 332 2 1222233556677889999998877766653 4556666677766554
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.61 E-value=5.2e-13 Score=117.59 Aligned_cols=250 Identities=12% Similarity=0.017 Sum_probs=182.2
Q ss_pred CCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHh---------cCCchHHHHHHHHhhhcCCCCCchhHH
Q 038490 16 KDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGR---------AKMFDEMQQILHQLKHDTRIVPKEIIF 86 (344)
Q Consensus 16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 86 (344)
++.++|+.+|++..... |.+...|..+..++.. .+++++|...+++..+.. +.+...+
T Consensus 275 ~~~~~A~~~~~~Al~ld-----------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~~~~a~ 341 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-----------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HNNPQAL 341 (553)
T ss_pred HHHHHHHHHHHHHHhcC-----------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CCCHHHH
Confidence 45678999999874432 2356677777665542 244789999999998753 4467778
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhC
Q 038490 87 CNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSR 166 (344)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (344)
..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+..+.+...+..++..+...|
T Consensus 342 ~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g 420 (553)
T PRK12370 342 GLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT 420 (553)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence 888888999999999999999999987 6677889999999999999999999999999887755555555566677789
Q ss_pred ChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHH
Q 038490 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD-GQVFASLIKGLCAVGELSLALGV 245 (344)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 245 (344)
++++|...++++.....+-+...+..+..++...|+.++|...+.++... .|+ ....+.+...|...| ++|...
T Consensus 421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g--~~a~~~ 495 (553)
T PRK12370 421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQNS--ERALPT 495 (553)
T ss_pred CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhccH--HHHHHH
Confidence 99999999999876632224455666777888999999999999886543 343 444555666667777 477777
Q ss_pred HHHHHHCCC-CCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 246 KEEMVRDKI-EMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 246 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
++.+.+..- .+....+ +-..+.-.|+-+.+... +++.+.
T Consensus 496 l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 496 IREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 777665311 1121222 44455666776666655 777665
No 46
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.60 E-value=2.5e-12 Score=101.18 Aligned_cols=201 Identities=11% Similarity=0.012 Sum_probs=158.5
Q ss_pred cchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038490 45 YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124 (344)
Q Consensus 45 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 124 (344)
.....+..+...+...|++++|.+.+++..+. .+.+...+..+...+...|++++|.+.+++..+.+ +.+...+..+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~ 105 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNY 105 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 34677888999999999999999999999875 24456788889999999999999999999999876 5667788889
Q ss_pred HHHHHhcCChHHHHHHHHHHhccCC--CCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhch
Q 038490 125 LNPKLTCGKLDRMKELFQIMEKYVS--PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR 202 (344)
Q Consensus 125 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 202 (344)
...+...|++++|...+++...... .....+..+...+...|++++|...+++..... +.+...+..+...+...|+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC
Confidence 9999999999999999999876432 234456667778888888888888888887763 2245566677777788888
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038490 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251 (344)
Q Consensus 203 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 251 (344)
+++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 185 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 185 YKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888888876654 244556666667777777888888877776654
No 47
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=9.3e-12 Score=108.13 Aligned_cols=296 Identities=13% Similarity=0.077 Sum_probs=224.7
Q ss_pred CCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHH
Q 038490 43 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122 (344)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 122 (344)
..|........+..+...|++++|.+++.++++. .+.+...|..|...|-..|+.+++...+-..-..+ +.|...|.
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~ 211 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWK 211 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHH
Confidence 3444555555666666679999999999999986 36678899999999999999999999887776665 66778999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHH----HHHHHHH
Q 038490 123 TLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG----TLIYGLC 198 (344)
Q Consensus 123 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~ 198 (344)
.+.....+.|+++.|.-.|.+..+..|++....---+..|-+.|+...|+.-|.++.....+.|..-+. .+++.+.
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988887777778899999999999999999999874433333333 3456677
Q ss_pred hhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---------------------------
Q 038490 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR--------------------------- 251 (344)
Q Consensus 199 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------------- 251 (344)
..++.+.|.+.+.......+-.-+...++.++..+.+...++.+......+..
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 77777999999888776544444555666777777777666666655554433
Q ss_pred ----------------------------------CC--CCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhh
Q 038490 252 ----------------------------------DK--IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT 295 (344)
Q Consensus 252 ----------------------------------~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 295 (344)
.. +.-+...|.-+..+|...|.+.+|+.+|..+......-+...
T Consensus 372 ~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 372 KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 11 111344566788889999999999999999988755556778
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHhhcCC
Q 038490 296 YNALISGFCKEEDFEAAFTILDEMGDKGCKAN-PISYNVILGGLCKDGK 343 (344)
Q Consensus 296 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~ 343 (344)
|..+..+|...|..++|.+.|++.... .|+ ...-.+|-..+-+.|+
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~ 498 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGN 498 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCC
Confidence 888999999999999999999998864 343 3334444444444443
No 48
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=7.5e-13 Score=102.16 Aligned_cols=228 Identities=12% Similarity=0.050 Sum_probs=121.5
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCC
Q 038490 88 NVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRR 167 (344)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (344)
.+.++|.+.|.+.+|.+-++..+.. .|-+.+|..|...|.+..+...|+.++.+..+..|.+.....-+.+.+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 4555555666666665555555543 34445555555556555556666655555555444444444445555555555
Q ss_pred hhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 038490 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247 (344)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 247 (344)
.++|.++++...+.. +.++.....+...|.-.++.+-|+.+|+++++.. ..++..|+.+.-+|.-.++++-++.-|.
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG--~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG--AQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc--CCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 666666665555442 2244444445555555555666666666555442 2344455555555555555555555555
Q ss_pred HHHHCCCCC--CHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 038490 248 EMVRDKIEM--DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 248 ~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
+....--.| -..+|-.+....+..||+.-|.+.|+-....+.. +...+|.|.-.-.+.|++++|..++....+
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 555432222 2344555555555556666666666555554322 445555555555556666666666655544
No 49
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.56 E-value=3.1e-11 Score=103.27 Aligned_cols=269 Identities=12% Similarity=0.084 Sum_probs=198.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038490 49 HYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128 (344)
Q Consensus 49 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 128 (344)
........+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+ |.+..-|..+..+.
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 3444567788999999999999886653 45556677788999999999999999999999997 66666677777766
Q ss_pred Hhc-----CChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCCh-hHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhch
Q 038490 129 LTC-----GKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL-EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR 202 (344)
Q Consensus 129 ~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 202 (344)
... .+.+....+++.+....+ ...+...+.-.+.....+ ..+..++..+...|+++ +|+.+-..|....+
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp-~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYP-RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEK 158 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCc-cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhH
Confidence 332 257778888988876653 333333332222222233 35666777788888653 45556556666666
Q ss_pred HHHHHHHHHHHHHhc-------------CCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038490 203 VDEALKLKEDIMRVY-------------NVKPDGQ--VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267 (344)
Q Consensus 203 ~~~a~~~~~~~~~~~-------------~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 267 (344)
.+-...++....... .-+|+.. ++..+.+.|...|++++|++++++.++..+. .+..|..-.+.
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Kari 237 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 666666666544321 1134443 4466678888999999999999999998544 57888999999
Q ss_pred HHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC
Q 038490 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326 (344)
Q Consensus 268 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 326 (344)
+-+.|++.+|.+.++..+..... |...-+-.+..+.++|+.++|.+++....+.+..|
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 99999999999999999998665 77777778888999999999999999998776544
No 50
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.54 E-value=1.4e-10 Score=97.79 Aligned_cols=317 Identities=13% Similarity=0.060 Sum_probs=243.5
Q ss_pred hhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHH
Q 038490 7 RLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF 86 (344)
Q Consensus 7 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 86 (344)
.-++.+.+.+.++-|..+|... +.-++.+...|...+..--..|..+....+|++.... ++-....|
T Consensus 521 ~da~~~~k~~~~~carAVya~a-----------lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lw 587 (913)
T KOG0495|consen 521 DDAQSCEKRPAIECARAVYAHA-----------LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILW 587 (913)
T ss_pred hhHHHHHhcchHHHHHHHHHHH-----------HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHH
Confidence 3455667777888888888776 4446668888888888778888889999999988874 45555666
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhC
Q 038490 87 CNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSR 166 (344)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (344)
....+.+...|++..|..++....+.. +-+..+|-..+..-....+++.|..+|.+..... ++...|.--+..-.-.+
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~s-gTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSIS-GTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC-CcchhhHHHhHHHHHhh
Confidence 667777888899999999999888876 5577888888888889999999999998887643 66666766666666778
Q ss_pred ChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 038490 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246 (344)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 246 (344)
..++|.+++++..+. .+--...|..+.+.+-+.++.+.|...|..-.+ .++...-.|-.+...--+.|++-.|..++
T Consensus 666 ~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~il 742 (913)
T KOG0495|consen 666 NVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSIL 742 (913)
T ss_pred hHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHH
Confidence 899999999888876 232344566677788888889999888876443 23445667777777778888999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc----C-------------------------CCCChhhHH
Q 038490 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER----G-------------------------CKPNSVTYN 297 (344)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-------------------------~~p~~~~~~ 297 (344)
++..-.+++ +...|-..|++-.+.|+.+.|..++.+.... | ..-|+...-
T Consensus 743 drarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVll 821 (913)
T KOG0495|consen 743 DRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLL 821 (913)
T ss_pred HHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHH
Confidence 999888776 8899999999999999999988877665442 1 123444455
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCC
Q 038490 298 ALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343 (344)
Q Consensus 298 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 343 (344)
.+...+.....++.|.+.|.+..+.+ +-+-.+|.-+.+-+.++|.
T Consensus 822 aia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 822 AIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGT 866 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCC
Confidence 66677778889999999999998753 2255788888888888873
No 51
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=8.4e-12 Score=100.77 Aligned_cols=278 Identities=12% Similarity=0.093 Sum_probs=203.0
Q ss_pred HHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHH--HHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038490 56 KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNV--IGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133 (344)
Q Consensus 56 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 133 (344)
.+.+.|+++.|++++.-+.+.. -+.-...-+.| +.....-.++..|.+.-+.....+ .-+......-.+.....|+
T Consensus 428 ~~lk~~d~~~aieilkv~~~kd-nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKD-NKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhcc-chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 4667799999999988887653 12222222222 222223456777877777766554 4444444444445556799
Q ss_pred hHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHH
Q 038490 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213 (344)
Q Consensus 134 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 213 (344)
+++|...+++.......-......+.-.+-..|++++|++.|-++..- +..+......+...|....+..+|++++.+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999988643322222333334567889999999999887654 2336667777888888889999999998764
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCCh
Q 038490 214 MRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS 293 (344)
Q Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 293 (344)
.. -++.|+.+.+.|...|-+.|+-..|.+.+-.-.+. ++-+..+...|...|....-+++++..|++..- ++|+.
T Consensus 585 ~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~ 659 (840)
T KOG2003|consen 585 NS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQ 659 (840)
T ss_pred cc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccH
Confidence 32 45667899999999999999999998877665544 455889999999999999999999999998765 47999
Q ss_pred hhHHHHHHHH-hccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcC
Q 038490 294 VTYNALISGF-CKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342 (344)
Q Consensus 294 ~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 342 (344)
.-|..++..| .+.|++++|+.+|+..... ++-|..+..-|++.+...|
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 9999888755 4689999999999998865 6678888888888877655
No 52
>PF13041 PPR_2: PPR repeat family
Probab=99.53 E-value=3.4e-14 Score=81.52 Aligned_cols=50 Identities=48% Similarity=1.012 Sum_probs=43.0
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhh
Q 038490 291 PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340 (344)
Q Consensus 291 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 340 (344)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888875
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.9e-11 Score=99.29 Aligned_cols=292 Identities=12% Similarity=-0.030 Sum_probs=233.0
Q ss_pred CCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHH
Q 038490 40 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK 119 (344)
Q Consensus 40 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 119 (344)
+.+...+......-.+-+...+++.+..++.+.+.+.. +++...+..-|.++...|+..+-.-+=..+.+.- |-...
T Consensus 237 l~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~ 313 (611)
T KOG1173|consen 237 LIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKAL 313 (611)
T ss_pred hhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCc
Confidence 34445577777778888888999999999999998864 6666667777778888898888888878888765 66678
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHh
Q 038490 120 FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199 (344)
Q Consensus 120 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 199 (344)
+|-++.--|...|...+|.+.|.+.....+.-...|-.....|+-.|..++|+..+...-+. .+-...-+--+..-|.+
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMR 392 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHH
Confidence 89999988888999999999999998877777788999999999999999999999887654 11111112234456788
Q ss_pred hchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC--CCCHHHHHHHHHHHHHcCC
Q 038490 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD----KI--EMDAGIYSSLISALFKAGR 273 (344)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~g~ 273 (344)
.++.+.|.++|.+.+.- .+.|+...+-+.-.....+.+.+|..+|+..+.. +. ..-..+++.|..+|.+.+.
T Consensus 393 t~n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred hccHHHHHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 99999999999887643 2456777777766667788999999999888732 10 1134568899999999999
Q ss_pred cCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhh
Q 038490 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340 (344)
Q Consensus 274 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 340 (344)
+++|+..+++......+ +..++.++.-.|...|+++.|...|.+..- +.|+..+-..++..+..
T Consensus 471 ~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 99999999999888654 899999999999999999999999999885 57888888888776544
No 54
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.52 E-value=2.5e-11 Score=106.36 Aligned_cols=286 Identities=11% Similarity=0.036 Sum_probs=221.9
Q ss_pred cchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCC--CCCch------hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCC
Q 038490 45 YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR--IVPKE------IIFCNVIGFYGRARLLERALQMFDEMSSFNVQM 116 (344)
Q Consensus 45 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 116 (344)
+.....|.+.......|++.+|...|........ ..++. .+--.+..+.-..++++.|.++|..+.+.. +.
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~ 528 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PG 528 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-ch
Confidence 4577889999999999999999999998775410 12222 234456777778889999999999999875 44
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCC-CCcCHhhHHHHHH
Q 038490 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIY 195 (344)
Q Consensus 117 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~ 195 (344)
=+..|-.+....-..+...+|...+.........++..+..+...+.+...+..|..-|+...+.- ..+|..+...|..
T Consensus 529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 529 YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN 608 (1018)
T ss_pred hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH
Confidence 455666666444556888999999999998888888889888889999999999999887776542 2356666555655
Q ss_pred HHHh------------hchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 038490 196 GLCL------------ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSS 263 (344)
Q Consensus 196 ~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 263 (344)
.|.+ .+..++|+++|.++++.. +-+...-|.+.-+++..|++.+|..+|.++.+.... ...+|-.
T Consensus 609 ~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lN 685 (1018)
T KOG2002|consen 609 VYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLN 685 (1018)
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeee
Confidence 4432 356789999999988754 567777888888999999999999999999987653 6678889
Q ss_pred HHHHHHHcCCcCcHHHHHHHHHHc-CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 038490 264 LISALFKAGRKNEFPAILKEMKER-GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334 (344)
Q Consensus 264 l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 334 (344)
+.++|...|++..|+++|+...+. ...-+....+.|.+++.+.|.+.+|.+.+.........-....+|..
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 999999999999999999987654 44447778889999999999999999998888765333233444443
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3.4e-11 Score=99.59 Aligned_cols=279 Identities=14% Similarity=0.029 Sum_probs=226.1
Q ss_pred hhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHH
Q 038490 8 LACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFC 87 (344)
Q Consensus 8 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (344)
.++.+-..+++.+.+.+++.+. ...++....+-.-|.++...|+..+-..+=.++.+. .|-.+.+|-
T Consensus 250 ~ad~~y~~c~f~~c~kit~~ll-----------e~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~ 316 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELL-----------EKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWF 316 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHH-----------hhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchh
Confidence 3455667788999999999883 334556667777778999999999988888888875 466678899
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCC
Q 038490 88 NVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRR 167 (344)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (344)
++.-.|...|...+|.+.|.+....+ +.-...|..+...|+-.|+.++|+..+...-+..+.....+--+.--|.+.++
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhcc
Confidence 99999989999999999999988665 33456899999999999999999999988877665444445556667888999
Q ss_pred hhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcC-C---C-CCHHHHHHHHHHHHhcCChHHH
Q 038490 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN-V---K-PDGQVFASLIKGLCAVGELSLA 242 (344)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~---~-~~~~~~~~l~~~~~~~~~~~~a 242 (344)
.+.|.+.|.+.... .+.|+...+-+.-.....+.+.+|..+|+..+..-. + . --.-+++.|..+|.+.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 99999999998877 355788888887777889999999999998763211 0 1 1234688899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 038490 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304 (344)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 304 (344)
+..+++.+....+ +..++..+.-.|...|+++.|.+.|.+.... .|+-.+...++..+.
T Consensus 475 I~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 475 IDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence 9999999998765 9999999999999999999999999998875 677767766666443
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=3.3e-12 Score=110.66 Aligned_cols=241 Identities=17% Similarity=0.168 Sum_probs=130.8
Q ss_pred CCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHH
Q 038490 78 RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNI 157 (344)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (344)
|+.|+..+|..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+. .|...+|..
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------EPLADTYTN 88 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------CCchhHHHH
Confidence 45555555555555555555555555 5555554444445555555555555555444333 245555555
Q ss_pred HHHHHHhhCChhH-----------------------HHHHHHHHh-hCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHH
Q 038490 158 LIHGCVVSRRLED-----------------------AWKVFDEMV-KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213 (344)
Q Consensus 158 l~~~~~~~~~~~~-----------------------a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 213 (344)
|..+|...||+.. ...++..+. ..+..||..+ .+....-.|-++.+.+++..+
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHHhhC
Confidence 5555555555432 111111110 0111222222 122223445555655555443
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCC
Q 038490 214 MRVYNVKPDGQVFASLIKGLCAVG-ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292 (344)
Q Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 292 (344)
-......|... +++-+.... .+++-..+.+...+ .|+..+|.+++.+-..+|+++.|..++.+|++.|++.+
T Consensus 166 Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 166 PVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred CcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 22111112111 233222222 22222222222222 47888888888888888888888888888888888777
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcC
Q 038490 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342 (344)
Q Consensus 293 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 342 (344)
..-|..|+-+ .++...+..++.-|.+.|+.|+..|+.-.+..+..+|
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 7777777655 7777778888888888888888888877777666543
No 57
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.50 E-value=8.1e-11 Score=100.74 Aligned_cols=294 Identities=15% Similarity=0.112 Sum_probs=208.9
Q ss_pred hhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhH
Q 038490 6 IRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEII 85 (344)
Q Consensus 6 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 85 (344)
.....++...|++++|++.++..... +.............+.+.|+.++|..++..+...+ |+...
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~~-----------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~ 73 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEKQ-----------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYD 73 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhhh-----------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHH
Confidence 34467788899999999999886333 23356667888899999999999999999999863 55555
Q ss_pred H-HHHHHHHHh-----cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHhccCCCCcccHHHH
Q 038490 86 F-CNVIGFYGR-----ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD-RMKELFQIMEKYVSPDACSYNIL 158 (344)
Q Consensus 86 ~-~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~l 158 (344)
| ..+..+..- ..+.+...++|+++...- |.......+.-.+..-.++. .+...+..+...|.| .+|+.+
T Consensus 74 Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP--slF~~l 149 (517)
T PF12569_consen 74 YYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP--SLFSNL 149 (517)
T ss_pred HHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc--hHHHHH
Confidence 4 445555422 235788889999887653 33333333322222222232 344455555555544 457777
Q ss_pred HHHHHhhCChhHHHHHHHHHhhC----C----------CCcCHh--hHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC
Q 038490 159 IHGCVVSRRLEDAWKVFDEMVKR----R----------LQPTLV--TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222 (344)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 222 (344)
-..|......+-..+++...... + -+|+.. ++..+...|...|++++|+.++++.+... +..
T Consensus 150 k~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~ 227 (517)
T PF12569_consen 150 KPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTL 227 (517)
T ss_pred HHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCc
Confidence 77777666666666666665432 1 133442 44556677889999999999999988752 334
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhH------
Q 038490 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY------ 296 (344)
Q Consensus 223 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~------ 296 (344)
+..|..-...+-+.|++.+|.+.++.....+.. |...-+-.+..+.+.|++++|..++...-..+..|-...+
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~W 306 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMW 306 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHH
Confidence 778888899999999999999999999998766 8888888999999999999999999998776543332222
Q ss_pred --HHHHHHHhccCCHHHHHHHHHHHh
Q 038490 297 --NALISGFCKEEDFEAAFTILDEMG 320 (344)
Q Consensus 297 --~~l~~~~~~~~~~~~a~~~~~~~~ 320 (344)
.....+|.+.|++..|++.|..+.
T Consensus 307 f~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 307 FETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344578889999999988776664
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.49 E-value=9.1e-11 Score=86.50 Aligned_cols=210 Identities=13% Similarity=-0.020 Sum_probs=161.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHh
Q 038490 120 FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199 (344)
Q Consensus 120 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 199 (344)
+...|.-.|...|+...|..-+++..+..+.+..+|..+...|.+.|+.+.|.+.|++....... +....|....-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 44556667888888888888888888888778888888888888888888888888888776322 45556666667788
Q ss_pred hchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHH
Q 038490 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279 (344)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 279 (344)
.|++++|...|++.+.......-..+|..+.-|..+.|+.+.|...|++.++.... ...+.-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 88888888888888876555555678888888888888888888888888887655 56667778888888888888888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 038490 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334 (344)
Q Consensus 280 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 334 (344)
.++.....+. ++..+....|+.-...|+.+.+-++=..+.+. .|...-|...
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~f 246 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQTF 246 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHhH
Confidence 8888887765 67777777788888888888777766666553 4555544443
No 59
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=2.3e-11 Score=98.31 Aligned_cols=281 Identities=13% Similarity=0.021 Sum_probs=209.2
Q ss_pred hhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHH--HHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHH
Q 038490 9 ACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDL--IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF 86 (344)
Q Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 86 (344)
+.-+.++|+++.|+++++-+.+..+ +....+-+. ++..+..-.++..|.+.-+...... .-+....
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdn----------k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~ 493 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDN----------KTASAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAAL 493 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccc----------hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHh
Confidence 3457789999999999988754432 111222222 2333333457888888877766543 2233333
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhC
Q 038490 87 CNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSR 166 (344)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (344)
..-.......|++++|.+.|.+.+..+.......|| +.-.+-..|++++|+..|-++...-..+......+...|-...
T Consensus 494 ~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~le 572 (840)
T KOG2003|consen 494 TNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLE 572 (840)
T ss_pred hcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 333444556899999999999998655333333333 3334677899999999998886655577888888999999999
Q ss_pred ChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 038490 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246 (344)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 246 (344)
+...|++++.+.... ++.|+...+.+...|-+.|+-.+|.+.+-+--+ -++-+..+..-|...|....-+++++..|
T Consensus 573 d~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ 649 (840)
T KOG2003|consen 573 DPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYF 649 (840)
T ss_pred CHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999887665 667889999999999999999999988765333 24557888888888899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH-HHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 038490 247 EEMVRDKIEMDAGIYSSLISAL-FKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308 (344)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 308 (344)
++..- +.|+..-|..++..| .+.|++.+|.++++..... ++-|......|++.+...|.
T Consensus 650 ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 650 EKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 98765 478999999887665 4589999999999999876 45588888888888877764
No 60
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.49 E-value=5.7e-10 Score=94.21 Aligned_cols=281 Identities=10% Similarity=0.011 Sum_probs=211.7
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038490 47 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126 (344)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 126 (344)
..+|..-...|.+.+.++-|..+|....+. ++-+...|......--..|..++...+++++...- +.....|.....
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ak 592 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAK 592 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHH
Confidence 456666777777777777777777777764 34556667666666666777888888888877653 445566667777
Q ss_pred HHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHH
Q 038490 127 PKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA 206 (344)
Q Consensus 127 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 206 (344)
.+...|+...|..++...-+..+.+...|-+-+..-..+.++++|..+|.+.... .|+...|..-+....-.++.++|
T Consensus 593 e~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHH
Confidence 7777888888888888888777777788888888888888888888888877664 45666666656556667888899
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHH
Q 038490 207 LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286 (344)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 286 (344)
.+++++.++.+ +.-...|..+.+.+-+.++++.|.+.|..-.+. ++-.+..|-.|...--+.|.+-.|..++++.+-
T Consensus 671 ~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 671 LRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 99988888753 444667778888888888888888888776665 233566777777777888899999999999988
Q ss_pred cCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 038490 287 RGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGG 337 (344)
Q Consensus 287 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 337 (344)
+++. +...|...|+.-.+.|..+.|..++.+..+. ++-+...|..-|..
T Consensus 748 kNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 748 KNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWL 796 (913)
T ss_pred cCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHh
Confidence 8766 8889999999999999999999888877653 33344445444443
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=7.5e-12 Score=96.77 Aligned_cols=230 Identities=14% Similarity=0.111 Sum_probs=153.6
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038490 51 DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130 (344)
Q Consensus 51 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 130 (344)
+.+..+|.+.|.+.+|...|+...+. .|.+.||..|-+.|.+..+.+.|+.++.+-.+.- +-++.......+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 55667777777777777777766653 4566667777777777777777777777666542 4455555556666667
Q ss_pred cCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHH
Q 038490 131 CGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210 (344)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 210 (344)
.++.++|.++++...+..+.++.....+...|.-.++.+.|+.+++++.+-|+. +...|..+.-+|.-.+++|-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 777777777777777666666666666677777777777777777777777665 5666666666666677777777777
Q ss_pred HHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 211 EDIMRVYNVKPD--GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 211 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
.+.+... ..|+ ..+|..+-......||+..|.+.|+-....+.. +...++.|.-.-.+.|++++|..++......
T Consensus 382 ~RAlsta-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTA-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhc-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 7655432 1222 345555655566677777777777777666544 5666777776677777777777777766654
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4.1e-10 Score=90.00 Aligned_cols=291 Identities=11% Similarity=-0.017 Sum_probs=220.1
Q ss_pred cccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchh-HHHHHHH
Q 038490 13 RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI-IFCNVIG 91 (344)
Q Consensus 13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~ 91 (344)
+..++...|.+.|-.+.. ...++.|+.....+..++...|+.++|...|++.... .|... ....-.-
T Consensus 207 ~~~~~hs~a~~t~l~le~---------~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~ 274 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHD---------NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAV 274 (564)
T ss_pred HHhcccchhhhHHHHHHh---------hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---ChhhhhhHHHHHH
Confidence 334455555555444322 2346678999999999999999999999999987653 34432 2222233
Q ss_pred HHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHH
Q 038490 92 FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDA 171 (344)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 171 (344)
.+.+.|+.+....+...+.... +-+...|..-........+++.|+.+.++..+..+.+...+-.-...+...|+.++|
T Consensus 275 LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 275 LLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQA 353 (564)
T ss_pred HHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHH
Confidence 4567788888888888877543 344455555566666778899999999999988888888888888889999999999
Q ss_pred HHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHH-HHH-HhcCChHHHHHHHHHH
Q 038490 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI-KGL-CAVGELSLALGVKEEM 249 (344)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~ 249 (344)
.-.|+..... -+-+...|.-++..|...|++.+|..+-+..++.. +.+..+...+. ..+ .....-++|.++++..
T Consensus 354 ~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 354 VIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 9999987765 23477899999999999999999999988887753 44555554442 222 2233457899999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 038490 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322 (344)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 322 (344)
.+..+. -....+.+...|...|..++++.++++.... .||....+.|...+...+.+++|+..|......
T Consensus 431 L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 431 LKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred hccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 877543 4566778889999999999999999998875 689999999999999999999999999988764
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.45 E-value=8.7e-11 Score=99.46 Aligned_cols=238 Identities=18% Similarity=0.169 Sum_probs=178.9
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhc-----C-CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhcc-----CC-
Q 038490 83 EIIFCNVIGFYGRARLLERALQMFDEMSSF-----N-VQMTV-KFFNTLLNPKLTCGKLDRMKELFQIMEKY-----VS- 149 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~- 149 (344)
..+...+...|...|+++.|..++....+. | ..|.. ...+.+...|...+++++|..+|+++... |.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356667999999999999999999998865 2 12333 34555778899999999999999887543 22
Q ss_pred --CCcccHHHHHHHHHhhCChhHHHHHHHHHhhC-----CC-CcCH-hhHHHHHHHHHhhchHHHHHHHHHHHHHhcC--
Q 038490 150 --PDACSYNILIHGCVVSRRLEDAWKVFDEMVKR-----RL-QPTL-VTFGTLIYGLCLELRVDEALKLKEDIMRVYN-- 218 (344)
Q Consensus 150 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 218 (344)
.-..+++.|...|.+.|++++|...+++..+- |. .|.+ ..++.+...++..+++++|..+++..++...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 23456777888899999999988888776431 22 2222 2355666788889999999999988765432
Q ss_pred CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHH-
Q 038490 219 VKPD----GQVFASLIKGLCAVGELSLALGVKEEMVRD-----K--IEMDAGIYSSLISALFKAGRKNEFPAILKEMKE- 286 (344)
Q Consensus 219 ~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 286 (344)
+.++ ..+++.|...|.+.|++++|.+++++++.. + ..-....++.|...|.+.+...+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 457999999999999999999999998753 1 111245678899999999999999999987543
Q ss_pred ---cCCC-C-ChhhHHHHHHHHhccCCHHHHHHHHHHHh
Q 038490 287 ---RGCK-P-NSVTYNALISGFCKEEDFEAAFTILDEMG 320 (344)
Q Consensus 287 ---~~~~-p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 320 (344)
.|+. | ...+|..|...|...|+++.|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3322 2 33678999999999999999999988875
No 64
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=1.7e-09 Score=88.03 Aligned_cols=299 Identities=13% Similarity=0.105 Sum_probs=190.8
Q ss_pred cCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHH
Q 038490 15 QKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYG 94 (344)
Q Consensus 15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 94 (344)
.|++..|.++|++-.. ..|+..+|++.|..-.+-+.++.|..++++..- +.|+...|....+.=-
T Consensus 154 LgNi~gaRqiferW~~------------w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~ 218 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME------------WEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEE 218 (677)
T ss_pred hcccHHHHHHHHHHHc------------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHH
Confidence 4777778888855312 455888888888888888888888888888765 4588888888777777
Q ss_pred hcccHHHHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHh---------------------------
Q 038490 95 RARLLERALQMFDEMSSF-NV-QMTVKFFNTLLNPKLTCGKLDRMKELFQIME--------------------------- 145 (344)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------------------- 145 (344)
+.|.+..|.++|+...+. |- ..+...+++....=.++..++.|.-+|+-..
T Consensus 219 k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~g 298 (677)
T KOG1915|consen 219 KHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEG 298 (677)
T ss_pred hcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhh
Confidence 888888888888877643 10 0111222222222223333444443333222
Q ss_pred -----------------ccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCH---------------------
Q 038490 146 -----------------KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL--------------------- 187 (344)
Q Consensus 146 -----------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------- 187 (344)
..++.|-.+|-..++.-...|+.+...++|++.... ++|-.
T Consensus 299 IEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEl 377 (677)
T KOG1915|consen 299 IEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEEL 377 (677)
T ss_pred hHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 223344455666666666778888888888887765 44421
Q ss_pred -----------------------hhHHHHHHHH----HhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 038490 188 -----------------------VTFGTLIYGL----CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240 (344)
Q Consensus 188 -----------------------~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 240 (344)
.||..+--.| .+..+...|.+++...+ |..|-..+|...|..-.+.++++
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHH
Confidence 1111111111 12334444444444433 55677777777777778888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcC-CCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038490 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG-CKPNSVTYNALISGFCKEEDFEAAFTILDEM 319 (344)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 319 (344)
.+..+++..++.++. |..+|......-...|+.+.|..+|.-..... +......|.+.|.--...|.++.|..+++++
T Consensus 455 RcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 455 RCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 888888888888765 77888888888888889999999888887752 1112345666666667888999999999998
Q ss_pred hhCCCCCChhhHHHHH
Q 038490 320 GDKGCKANPISYNVIL 335 (344)
Q Consensus 320 ~~~~~~p~~~~~~~ll 335 (344)
.+. .+...+|.++.
T Consensus 534 L~r--t~h~kvWisFA 547 (677)
T KOG1915|consen 534 LDR--TQHVKVWISFA 547 (677)
T ss_pred HHh--cccchHHHhHH
Confidence 875 23444555543
No 65
>PF13041 PPR_2: PPR repeat family
Probab=99.44 E-value=2.8e-13 Score=77.67 Aligned_cols=49 Identities=51% Similarity=0.793 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 038490 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304 (344)
Q Consensus 256 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 304 (344)
||..+||.++.+|++.|++++|.++|++|.+.|++||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4666666666666666666666666666666666666666666666654
No 66
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.1e-10 Score=95.14 Aligned_cols=225 Identities=11% Similarity=0.067 Sum_probs=149.3
Q ss_pred HHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 038490 56 KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135 (344)
Q Consensus 56 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 135 (344)
.+.-.|+...|.+-|+..+... +.+...|..+...|...++.++..+.|++..+.+ +-++.+|..=.+.+.-.++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~--~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLD--PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcC--cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 3444577777777777776642 2222336666667777777777777777777766 556667777777777777777
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 038490 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215 (344)
Q Consensus 136 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 215 (344)
+|..=|++.....+.+...|..+.-+..+.+.+++++..|++..++ .+..+..|+.....+...+++++|.+.|+..++
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 7777777777776667777777777777777777777777777766 444566777777777777777777777777665
Q ss_pred hcCC------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHH
Q 038490 216 VYNV------KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286 (344)
Q Consensus 216 ~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 286 (344)
.... .+.+.+...++..- -.+++..|.+++++..+.+++ ....|..|...-.+.|+.++|+++|++...
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3211 11122222222222 236777777777777776655 556677777777777777777777776544
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.43 E-value=2.7e-10 Score=92.37 Aligned_cols=219 Identities=14% Similarity=0.044 Sum_probs=128.9
Q ss_pred CCchHHHHHHHHhhhcCCCCCc--hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 038490 61 KMFDEMQQILHQLKHDTRIVPK--EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138 (344)
Q Consensus 61 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 138 (344)
+..+.++.-+.++.......|+ ...|..+...+...|+.++|...|+...+.. +.+...|+.+...+...|+++.|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3455566666666543222222 2446666667777777888877777777765 556677777777777778888888
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcC
Q 038490 139 ELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218 (344)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 218 (344)
..|++..+..+.+..+|..+..++...|++++|.+.|++..+.. |+..........+...++.++|...+.+.....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 77777777666666677777777777777888877777777653 322211122222344566777777776544321
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCC---CCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcC
Q 038490 219 VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD---KIE---MDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288 (344)
Q Consensus 219 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 288 (344)
.++... ..+. ....|+...+ +.+..+.+. .+. .....|..+...+...|++++|...|++..+.+
T Consensus 196 -~~~~~~-~~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWG-WNIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccH-HHHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 222111 1222 2234444433 233333321 110 123466677777777777777777777777654
No 68
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=5.5e-10 Score=91.12 Aligned_cols=223 Identities=13% Similarity=0.089 Sum_probs=181.3
Q ss_pred HHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHH
Q 038490 93 YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAW 172 (344)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 172 (344)
+.-.|+.-.|..-|+..+... +.+...|-.+..+|....+.++....|+...+.++.++.+|..-..++.-.+++++|.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 345788899999999999876 4444558888889999999999999999999999989999999999999999999999
Q ss_pred HHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038490 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252 (344)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (344)
.-|++..... +.+...|-.+-.+..+.+++++++..|++..+. ++..+..|+...+.+...++++.|.+.|+...+.
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999998763 225566666667778899999999999998774 4777889999999999999999999999999876
Q ss_pred CCC-----CCHH--HHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 038490 253 KIE-----MDAG--IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 253 ~~~-----~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
... .+.. +.-.++. +.-.+++..|..++.+..+..++ ....|-+|...-.+.|+.++|+++|++-..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 332 1111 1122221 22348899999999999987654 556789999999999999999999998764
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.38 E-value=2.1e-09 Score=87.23 Aligned_cols=227 Identities=12% Similarity=-0.011 Sum_probs=162.9
Q ss_pred ccHHHHHHHHHHHHhcC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHH
Q 038490 97 RLLERALQMFDEMSSFN-VQMT--VKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWK 173 (344)
Q Consensus 97 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 173 (344)
+..+.++.-+.+++... ..|+ ...|..+...+...|+++.|...|++..+..+.+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 46677777777777543 1222 45678888889999999999999999999888889999999999999999999999
Q ss_pred HHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 038490 174 VFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253 (344)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 253 (344)
.|++..+.... +..++..+..++...|++++|.+.++..++. .|+..............++.++|...+.+.....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 99999876422 4567777888889999999999999998875 3432222222223445678999999997765432
Q ss_pred CCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcC---C--CC-ChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC
Q 038490 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG---C--KP-NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327 (344)
Q Consensus 254 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 327 (344)
.++... ........|+..++ ..+..+.+.. + .| ....|..+...+.+.|++++|...|++..+.++ ||
T Consensus 196 -~~~~~~---~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~ 269 (296)
T PRK11189 196 -DKEQWG---WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YN 269 (296)
T ss_pred -CccccH---HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ch
Confidence 223222 22334456777665 3555554321 1 11 235788899999999999999999999998653 35
Q ss_pred hhhHHH
Q 038490 328 PISYNV 333 (344)
Q Consensus 328 ~~~~~~ 333 (344)
..-+..
T Consensus 270 ~~e~~~ 275 (296)
T PRK11189 270 FVEHRY 275 (296)
T ss_pred HHHHHH
Confidence 544444
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.37 E-value=2.5e-09 Score=79.02 Aligned_cols=198 Identities=11% Similarity=-0.045 Sum_probs=124.4
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhh
Q 038490 86 FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165 (344)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (344)
...|.-.|...|+...|..-+++.++.+ +.+..+|..+...|.+.|+.+.|.+-|++..+..+.+..+.|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3345556666777777777777777665 445566666667777777777777777777666666666666666666777
Q ss_pred CChhHHHHHHHHHhhCC-CCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 038490 166 RRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244 (344)
Q Consensus 166 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 244 (344)
|++++|...|++....- ..--..+|..+.-+..+.|+.+.|...|++.++.. +......-.+.....+.|++..|..
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHHHH
Confidence 77777777777666541 11123455555555566677777777777666543 2233445556666666777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
.++.....+. ++..+.-..|+.--..|+.+.+.+.=..+...
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7766666554 56666666666666667666665555555443
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.1e-09 Score=87.61 Aligned_cols=265 Identities=12% Similarity=0.029 Sum_probs=207.3
Q ss_pred hhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhH
Q 038490 6 IRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEII 85 (344)
Q Consensus 6 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 85 (344)
..++..+...|+.++|+..|++...- .+.+...-....-.+.+.|+.+....+...+.... +-+..-
T Consensus 236 ~~lak~~~~~Gdn~~a~~~Fe~~~~~-----------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~--~~ta~~ 302 (564)
T KOG1174|consen 236 MALGKCLYYNGDYFQAEDIFSSTLCA-----------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV--KYTASH 302 (564)
T ss_pred HHHhhhhhhhcCchHHHHHHHHHhhC-----------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh--hcchhh
Confidence 35677888899999999999997332 33355555555667788999999999988887642 234444
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhh
Q 038490 86 FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165 (344)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (344)
|-.-........++..|+.+-++.++.+ +.+...+-.-...+...++.++|.-.|+......|.+..+|.-|+.+|...
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhh
Confidence 5555556667889999999999999876 666777777778888999999999999999988888899999999999999
Q ss_pred CChhHHHHHHHHHhhCCCCcCHhhHHHHH-HHH-HhhchHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHH
Q 038490 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLI-YGL-CLELRVDEALKLKEDIMRVYNVKPD-GQVFASLIKGLCAVGELSLA 242 (344)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 242 (344)
|.+.+|...-+...+. .+.+..+.+.+. ..+ ....--++|.++++..++. .|+ ....+.+...+...|..+.+
T Consensus 382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~---~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI---NPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc---CCccHHHHHHHHHHHHhhCccchH
Confidence 9999998877765544 334555665552 222 3344567899999886653 455 55677888888999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCC
Q 038490 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290 (344)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 290 (344)
+.+++..... .||....+.|...+...+.+++|.+.|......+++
T Consensus 458 i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 458 IKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 9999999876 579999999999999999999999999998887543
No 72
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=1.8e-08 Score=82.29 Aligned_cols=304 Identities=10% Similarity=0.043 Sum_probs=210.2
Q ss_pred ccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHH
Q 038490 14 LQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93 (344)
Q Consensus 14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 93 (344)
.++++..|..+|++... ....+...|.-.+.+-.+..++..|..++++.... ++--...|..-+..=
T Consensus 85 sq~e~~RARSv~ERALd-----------vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALD-----------VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYME 151 (677)
T ss_pred hHHHHHHHHHHHHHHHh-----------cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHH
Confidence 46778899999999733 33447888999999999999999999999998874 232334555566666
Q ss_pred HhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHH
Q 038490 94 GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWK 173 (344)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 173 (344)
-..|++..|.++|+.-.+. .|+...|++.++.=.+..+++.|..++++..-.. |+..+|--...--.++|+...|..
T Consensus 152 E~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHH
Confidence 6789999999999998875 7999999999999999999999999999986533 888899888888899999999999
Q ss_pred HHHHHhhC-CC-CcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHH----
Q 038490 174 VFDEMVKR-RL-QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD--GQVFASLIKGLCAVGELSLALGV---- 245 (344)
Q Consensus 174 ~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~---- 245 (344)
+|+...+. |- ..+...+.+...--.+...++.|.-+|+-.+..- +.+ ...|..+..---+-|+.....+.
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~--pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI--PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 99988764 11 1122334444444445678888888888877642 333 45555555544455554333322
Q ss_pred ----HHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCCh-h-hHHHH--------HHHHhccCCHHH
Q 038490 246 ----KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS-V-TYNAL--------ISGFCKEEDFEA 311 (344)
Q Consensus 246 ----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~-~~~~l--------~~~~~~~~~~~~ 311 (344)
++.+++.+ +.|-.+|--.++.-...|+.+...++|++.... ++|-. . .|.-. +-.-....+++.
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34444444 337777777777777788888888888887765 33311 1 11111 111234667777
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHH
Q 038490 312 AFTILDEMGDKGCKANPISYNVILGGL 338 (344)
Q Consensus 312 a~~~~~~~~~~~~~p~~~~~~~ll~~~ 338 (344)
+.++++..++. ++-...|+..+--.|
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmy 410 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMY 410 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHH
Confidence 78888777763 333445555544333
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.32 E-value=6.2e-09 Score=87.44 Aligned_cols=307 Identities=13% Similarity=0.019 Sum_probs=185.6
Q ss_pred chhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch
Q 038490 4 SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE 83 (344)
Q Consensus 4 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 83 (344)
.+..++..+...|+++.|.+.+........ ...............+...|++++|.+++++..+. .+.+.
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~ 77 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALA--------ARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDL 77 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcH
Confidence 344556666667778887666666432221 01112223334455677889999999999998875 23344
Q ss_pred hHHHH---HHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHH
Q 038490 84 IIFCN---VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIH 160 (344)
Q Consensus 84 ~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 160 (344)
..+.. ........+..+.+.+.+..... ..+........+...+...|++++|...+++.....+.+...+..+..
T Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 78 LALKLHLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred HHHHHhHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 44432 11222224555556665554211 112334455566778889999999999999999888877888889999
Q ss_pred HHHhhCChhHHHHHHHHHhhCCC-CcCH--hhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHH-H--HHHHHHH
Q 038490 161 GCVVSRRLEDAWKVFDEMVKRRL-QPTL--VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF-A--SLIKGLC 234 (344)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~ 234 (344)
++...|++++|...+++...... .|+. ..|..+...+...|++++|...+++........+..... + .++..+.
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLE 236 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHH
Confidence 99999999999999999876532 1222 234467778889999999999999875432212222211 1 2333334
Q ss_pred hcCChHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCC--------ChhhHHHHHHH
Q 038490 235 AVGELSLALGV--KEEMVRDKI--EMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP--------NSVTYNALISG 302 (344)
Q Consensus 235 ~~~~~~~a~~~--~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--------~~~~~~~l~~~ 302 (344)
..|....+.+. +........ ............++...|+.++|..+++.+......+ ..........+
T Consensus 237 ~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~ 316 (355)
T cd05804 237 LAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALY 316 (355)
T ss_pred hcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHH
Confidence 44543333332 211111111 1112222356677788899999999999886642210 11112222334
Q ss_pred HhccCCHHHHHHHHHHHhh
Q 038490 303 FCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 303 ~~~~~~~~~a~~~~~~~~~ 321 (344)
+...|+.++|.+.+.....
T Consensus 317 ~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 317 AFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5688999999999888764
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=1.8e-09 Score=91.63 Aligned_cols=240 Identities=12% Similarity=0.049 Sum_probs=178.1
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhc----CC-CCCchhH-HHHHHHHHHhcccHHHHHHHHHHHHhc-----C-
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHD----TR-IVPKEII-FCNVIGFYGRARLLERALQMFDEMSSF-----N- 113 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~- 113 (344)
-..+...+...|...|+++.|..+++...+. .| ..|...+ .+.+...|...+++++|..+|+++... |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 4455666899999999999999999987653 12 1344333 344778899999999999999999752 3
Q ss_pred -CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccC-----C--CC-cccHHHHHHHHHhhCChhHHHHHHHHHhhC---
Q 038490 114 -VQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV-----S--PD-ACSYNILIHGCVVSRRLEDAWKVFDEMVKR--- 181 (344)
Q Consensus 114 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 181 (344)
.+.-..+++.|..+|.+.|++++|...++...+.. . +. ...++.+...+...+++++|..++++..+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 12224577888889999999999988887654321 1 22 233566778889999999999999876542
Q ss_pred CCCc----CHhhHHHHHHHHHhhchHHHHHHHHHHHHHhc----C-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038490 182 RLQP----TLVTFGTLIYGLCLELRVDEALKLKEDIMRVY----N-VKP-DGQVFASLIKGLCAVGELSLALGVKEEMVR 251 (344)
Q Consensus 182 ~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 251 (344)
-..+ -..+++.+...|...|++++|.++++++++.. + ..+ ....++.+...|.+.+++.+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 1111 24678899999999999999999999987543 1 122 245678889999999999999888877543
Q ss_pred ----CCCC--CCHHHHHHHHHHHHHcCCcCcHHHHHHHHH
Q 038490 252 ----DKIE--MDAGIYSSLISALFKAGRKNEFPAILKEMK 285 (344)
Q Consensus 252 ----~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 285 (344)
.|+. -...+|..|...|...|++++|+++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2322 235678999999999999999999988765
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.29 E-value=7.2e-08 Score=81.03 Aligned_cols=273 Identities=11% Similarity=-0.014 Sum_probs=174.4
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch-hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHH-
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE-IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT- 123 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 123 (344)
....|..+...+...|+.+.+.+.+....+.....++. .........+...|++++|.+.+++..+.. |.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 55667778888888899999877777766542112222 222223445667899999999999998875 445545442
Q ss_pred --HHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhc
Q 038490 124 --LLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201 (344)
Q Consensus 124 --l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 201 (344)
+.......+..+.+.+.+.......+........+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 22222224555566666555222222233444566678899999999999999999874 335667778888999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHHcCCcC
Q 038490 202 RVDEALKLKEDIMRVYNVKPDG--QVFASLIKGLCAVGELSLALGVKEEMVRDKI-EMDAGIY-S--SLISALFKAGRKN 275 (344)
Q Consensus 202 ~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~ 275 (344)
++++|...+++.++.....++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999999987653222333 3455778889999999999999999865433 1122211 1 2333344455444
Q ss_pred cHHHHHHHHHHc---CCCCChhhHH--HHHHHHhccCCHHHHHHHHHHHhh
Q 038490 276 EFPAILKEMKER---GCKPNSVTYN--ALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 276 ~a~~~~~~~~~~---~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
.+.+. +.+... ........+. ....++...|+.+.|..+++.+..
T Consensus 243 ~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 243 VGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred hHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 44333 222211 1111112222 456677889999999999999875
No 76
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.21 E-value=3e-09 Score=92.85 Aligned_cols=245 Identities=15% Similarity=0.152 Sum_probs=154.7
Q ss_pred CCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHH
Q 038490 41 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120 (344)
Q Consensus 41 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 120 (344)
.++.|+..+|..+|.-|+..|+.+.|- +|.-|.-+ ..+.+...++.++....+.++.+.+. .|...+
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 456678888888888888888888887 88877765 35666777888888877777777665 577778
Q ss_pred HHHHHHHHHhcCChHH---HHHHHHHHhcc----CCCCcccH---------------HHHHHHHHhhCChhHHHHHHHHH
Q 038490 121 FNTLLNPKLTCGKLDR---MKELFQIMEKY----VSPDACSY---------------NILIHGCVVSRRLEDAWKVFDEM 178 (344)
Q Consensus 121 ~~~l~~~~~~~~~~~~---a~~~~~~~~~~----~~~~~~~~---------------~~l~~~~~~~~~~~~a~~~~~~~ 178 (344)
|..|..+|...||... ..+.+..+... |......| ...+......|-++.+.+++..+
T Consensus 86 yt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 8888888888887544 22212222111 11111111 12222333344455555555443
Q ss_pred hhCC-CCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 038490 179 VKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257 (344)
Q Consensus 179 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 257 (344)
.... ..|..+ +++-+..... ...++... .+...-.|++.+|..++.+-...|+.+.|..++.+|.+.|++.+
T Consensus 166 Pvsa~~~p~~v----fLrqnv~~nt--pvekLl~~-cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 166 PVSAWNAPFQV----FLRQNVVDNT--PVEKLLNM-CKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred CcccccchHHH----HHHHhccCCc--hHHHHHHH-HHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 2221 011111 2333322222 22233322 22212268888888888888888888888888888888888887
Q ss_pred HHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 038490 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308 (344)
Q Consensus 258 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 308 (344)
..-|..|+-+ .++...++.+++-|.+.|+.|+..|+...+..+...|.
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 7777777765 77777888888888888888888888777766666443
No 77
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.20 E-value=2.5e-08 Score=91.25 Aligned_cols=237 Identities=12% Similarity=0.092 Sum_probs=190.7
Q ss_pred CCchhHHHHHHHHHHhcccHHHHHHHHHHHHhc-CC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccH
Q 038490 80 VPKEIIFCNVIGFYGRARLLERALQMFDEMSSF-NV---QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSY 155 (344)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (344)
+-+...|..-|......++.++|.+++++.+.. ++ .--..+|.++++.-...|.-+...++|+++.+.. .....|
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V~ 1533 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTVH 1533 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHHH
Confidence 445677888899999999999999999998853 11 1124578888888888898899999999998753 334568
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038490 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235 (344)
Q Consensus 156 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (344)
..|...|.+.+.+++|.++++.|.+. ..-....|...+..+.+..+-+.|..++.++++...-..........++.-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 88999999999999999999999887 33577789999999999999999999999998764333355666777777889
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCCh--hhHHHHHHHHhccCCHHHHH
Q 038490 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS--VTYNALISGFCKEEDFEAAF 313 (344)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~ 313 (344)
.|+.+.+..+|+..+...++ -...|+.+++.-.++|+.+.+..+|++....++.|-. ..|...+..--+.|+-+.+.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 99999999999999988655 7889999999999999999999999999999876643 45677776666777755554
Q ss_pred HHHHHH
Q 038490 314 TILDEM 319 (344)
Q Consensus 314 ~~~~~~ 319 (344)
.+=.+.
T Consensus 1692 ~VKarA 1697 (1710)
T KOG1070|consen 1692 YVKARA 1697 (1710)
T ss_pred HHHHHH
Confidence 443333
No 78
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.20 E-value=6.1e-08 Score=76.12 Aligned_cols=297 Identities=12% Similarity=0.038 Sum_probs=218.3
Q ss_pred hhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhH
Q 038490 6 IRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEII 85 (344)
Q Consensus 6 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 85 (344)
..++..+...|++..|+.-|... +.+.+.+..++..-...|...|+...|+.-+.+..+ .+||-..
T Consensus 42 lElGk~lla~~Q~sDALt~yHaA-----------ve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ 107 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAA-----------VEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMA 107 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHH-----------HcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHH
Confidence 35677788889999999999988 333444666666667788999999999999999887 4777532
Q ss_pred H-HHHHHHHHhcccHHHHHHHHHHHHhcCCCC--CHHH------------HHHHHHHHHhcCChHHHHHHHHHHhccCCC
Q 038490 86 F-CNVIGFYGRARLLERALQMFDEMSSFNVQM--TVKF------------FNTLLNPKLTCGKLDRMKELFQIMEKYVSP 150 (344)
Q Consensus 86 ~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 150 (344)
- ..-...+.++|.++.|..-|+..++..... .... ....+..+...|+...|+.....+.+..+.
T Consensus 108 ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W 187 (504)
T KOG0624|consen 108 ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW 187 (504)
T ss_pred HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc
Confidence 2 223456779999999999999998765211 1111 222334556679999999999999998888
Q ss_pred CcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHH-H--
Q 038490 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF-A-- 227 (344)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~-- 227 (344)
+...+..-..+|...|++..|+.-+....+.... +..++-.+-..+...|+.+.++...++.++. .||...+ .
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl---dpdHK~Cf~~Y 263 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL---DPDHKLCFPFY 263 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc---CcchhhHHHHH
Confidence 9999999999999999999999888877665333 4455556677788899999999999887754 5554321 1
Q ss_pred -HH---------HHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCC-Ch
Q 038490 228 -SL---------IKGLCAVGELSLALGVKEEMVRDKIEMDA---GIYSSLISALFKAGRKNEFPAILKEMKERGCKP-NS 293 (344)
Q Consensus 228 -~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~ 293 (344)
.+ +......+++.++.+-.+...+..+.... ..+..+-.++...|++.+|++...+.... .| |+
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv 341 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDV 341 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHH
Confidence 11 12234567788888888888877544222 33455667777889999999999998876 34 47
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 038490 294 VTYNALISGFCKEEDFEAAFTILDEMGDK 322 (344)
Q Consensus 294 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 322 (344)
.++---..+|.-..+++.|+.-|+...+.
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 77777778888888899999988888764
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.16 E-value=3.5e-07 Score=77.72 Aligned_cols=178 Identities=13% Similarity=0.071 Sum_probs=114.5
Q ss_pred CCCchhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCC
Q 038490 1 KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80 (344)
Q Consensus 1 ~p~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 80 (344)
||.|....+-.+...|+.++|....+..... ...+...|+.+.-.+....++++|+..|....... +
T Consensus 40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~-----------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~ 106 (700)
T KOG1156|consen 40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRN-----------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--K 106 (700)
T ss_pred cchhHHhccchhhcccchHHHHHHHHHHhcc-----------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--C
Confidence 3556666777788888899998888876333 33377788888888888889999999998887642 4
Q ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC--CCcccH---
Q 038490 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PDACSY--- 155 (344)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~--- 155 (344)
.|...+.-+.-.-++.++++........+.+.. +.....|..++.++.-.|+...|..+++..++... |+...+
T Consensus 107 dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~s 185 (700)
T KOG1156|consen 107 DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHS 185 (700)
T ss_pred CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence 445566555555556666666666665555543 33344555666666666666666666666554432 333332
Q ss_pred -------------------------------------HHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHH
Q 038490 156 -------------------------------------NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194 (344)
Q Consensus 156 -------------------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 194 (344)
.+-...+.+.+++++|..++..+... .||...|...+
T Consensus 186 e~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l 259 (700)
T KOG1156|consen 186 ELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGL 259 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHH
Confidence 22334456677788888888887776 45655554443
No 80
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.16 E-value=2.7e-09 Score=85.33 Aligned_cols=247 Identities=11% Similarity=0.047 Sum_probs=158.8
Q ss_pred ccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHH
Q 038490 14 LQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93 (344)
Q Consensus 14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 93 (344)
-.|++..++.-.+ ..... ...+......+.+++...|+++.++ ..+... -.|.......+...+
T Consensus 13 y~G~Y~~~i~e~~-~~~~~----------~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~--~~~~l~av~~la~y~ 76 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFS----------PENKLERDFYQYRSYIALGQYDSVL---SEIKKS--SSPELQAVRLLAEYL 76 (290)
T ss_dssp CTT-HHHHCHHHH-CHTST----------CHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT--SSCCCHHHHHHHHHH
T ss_pred HhhhHHHHHHHhh-ccCCC----------chhHHHHHHHHHHHHHHcCChhHHH---HHhccC--CChhHHHHHHHHHHH
Confidence 3578888886554 21111 1224555666788888888876544 444442 256666666666665
Q ss_pred HhcccHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHH
Q 038490 94 GRARLLERALQMFDEMSSFNVQMT-VKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAW 172 (344)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 172 (344)
...++-+.+..-+++........+ ..........+...|++++|++++... .+.......+.+|.+.++++.|.
T Consensus 77 ~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~ 151 (290)
T PF04733_consen 77 SSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAE 151 (290)
T ss_dssp CTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHH
T ss_pred hCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHH
Confidence 554556666666655544432322 233333345666778899888877643 45667777888999999999999
Q ss_pred HHHHHHhhCCCCcCHhhHHHHHHHHHh----hchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 038490 173 KVFDEMVKRRLQPTLVTFGTLIYGLCL----ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248 (344)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 248 (344)
+.++.|.+.+ +..+...+..++.. .+.+.+|..+|+++.+ .+.+++.+.+.+..+....|++++|.+++.+
T Consensus 152 k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 152 KELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999988763 33444455555543 2358899999999654 4467888888888889999999999999988
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCc-CcHHHHHHHHHHc
Q 038490 249 MVRDKIEMDAGIYSSLISALFKAGRK-NEFPAILKEMKER 287 (344)
Q Consensus 249 ~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 287 (344)
....+.. ++.+...++.+....|+. +.+.+.+.++...
T Consensus 227 al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 227 ALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 8776654 677777778777788877 4567788887765
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.15 E-value=1e-08 Score=82.11 Aligned_cols=251 Identities=14% Similarity=0.033 Sum_probs=162.8
Q ss_pred HHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038490 54 ITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133 (344)
Q Consensus 54 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 133 (344)
++-+.-.|++..++.-.+ ..... -..+......+.+++...|+.+.++ .++.... .|.......+...+...++
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~-~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFS-PENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTST-CHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTT
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCC-chhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccc
Confidence 455667799999987666 33221 1122344556778888899877544 4444443 6666666656555544345
Q ss_pred hHHHHHHHHHHhccCCC-CcccH-HHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHH
Q 038490 134 LDRMKELFQIMEKYVSP-DACSY-NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211 (344)
Q Consensus 134 ~~~a~~~~~~~~~~~~~-~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 211 (344)
-+.+..-++........ +..++ ......+...|++++|++++.+. .+.......+..+.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555444332222 22223 33335667789999999888653 256666778889999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 212 DIMRVYNVKPDGQVFASLIKGLCA----VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
.+.+ ...| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....
T Consensus 156 ~~~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 156 NMQQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHHC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HHHh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9643 2344 344445554433 34689999999998765 4568899999999999999999999999998776
Q ss_pred CCCCChhhHHHHHHHHhccCCH-HHHHHHHHHHhhC
Q 038490 288 GCKPNSVTYNALISGFCKEEDF-EAAFTILDEMGDK 322 (344)
Q Consensus 288 ~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 322 (344)
+.. +..+...++.+....|+. +.+.+++.++...
T Consensus 231 ~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 231 DPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp -CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred ccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 544 667777778777888887 7788888888764
No 82
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=1.5e-08 Score=84.59 Aligned_cols=223 Identities=13% Similarity=0.030 Sum_probs=181.6
Q ss_pred HHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHH
Q 038490 92 FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDA 171 (344)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 171 (344)
-+.+.|++.+|.-.|+...+.+ |-+...|..|.......++-..|+..+++..+..+.+....-.|.-.|...|.-..|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 3457899999999999999887 778899999999999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHhhCCCC-----c---CHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 038490 172 WKVFDEMVKRRLQ-----P---TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243 (344)
Q Consensus 172 ~~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 243 (344)
...++.-.....+ + +...-.. ..+.....+....++|-++....+..+|..++..|.-.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999987654211 0 0000000 1223344556677777777777776688888888888889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCCHHHHHHHHHHHh
Q 038490 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN-SVTYNALISGFCKEEDFEAAFTILDEMG 320 (344)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 320 (344)
+.|+..+...+. |..+||-|...++...+.++|+..|.+.++. +|+ ++....|.-.|...|.+++|.+.|=..+
T Consensus 451 Dcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999998766 8999999999999999999999999999987 454 3455567778999999999999887664
No 83
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.10 E-value=6.8e-07 Score=77.52 Aligned_cols=201 Identities=11% Similarity=0.017 Sum_probs=111.6
Q ss_pred hhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchh
Q 038490 5 SIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI 84 (344)
Q Consensus 5 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 84 (344)
+..+.-.+...|++..+.+.|++..+ ..--..+.|+.+...+...|.-..|..+++.-.....-+++..
T Consensus 326 ~d~Lt~al~~~g~f~~lae~fE~~~~-----------~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 326 FDHLTFALSRCGQFEVLAEQFEQALP-----------FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH-----------hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 44555666677788888888877622 2222456677777777777777777777776554321133334
Q ss_pred HHHHHHHHHH-hcccHHHHHHHHHHHHhc--CC--CCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHhccC
Q 038490 85 IFCNVIGFYG-RARLLERALQMFDEMSSF--NV--QMTVKFFNTLLNPKLTC-----------GKLDRMKELFQIMEKYV 148 (344)
Q Consensus 85 ~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~ 148 (344)
.+-...+.|. +.+.+++++.+-.+.... +. ......|..+.-+|... ....++.+.+++..+.+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 4433334443 345555655555555441 10 11222333333333221 12345556666666655
Q ss_pred CCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 038490 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216 (344)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 216 (344)
+.|+....-+.--|+..++++.|++...+..+-+..-+...|..+.-.+...+++.+|+.+.+..+.+
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 54554444455556666777777777777766654556666666666666666666666665555443
No 84
>PLN02789 farnesyltranstransferase
Probab=99.07 E-value=6e-07 Score=73.01 Aligned_cols=215 Identities=9% Similarity=-0.008 Sum_probs=130.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcc-cHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038490 49 HYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR-LLERALQMFDEMSSFNVQMTVKFFNTLLNP 127 (344)
Q Consensus 49 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (344)
++..+-..+...++.++|+.+..++.... +-+..+|+.--.++...+ ++++++..++.+.+.+ +.+..+|+.-..+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 44555556666788888888888888742 233445555555555666 5788888888888776 5566667766555
Q ss_pred HHhcCCh--HHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhh---ch
Q 038490 128 KLTCGKL--DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE---LR 202 (344)
Q Consensus 128 ~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 202 (344)
+.+.|+. +.+..+++++.+..+.+..+|+....++...|+++++++.++++.+.+.. +...|+.....+.+. |.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 5555652 56777777777777777888888888888888888888888888877544 455555544444333 11
Q ss_pred H----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 038490 203 V----DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV----GELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270 (344)
Q Consensus 203 ~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 270 (344)
. +..+....+++... +-+...|+-+...+... ++..+|...+.+....++. +......|+..|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 2 23444444444432 33445555555555442 2334455555555544332 44555555555553
No 85
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.06 E-value=1.1e-06 Score=74.92 Aligned_cols=171 Identities=16% Similarity=0.116 Sum_probs=93.8
Q ss_pred cHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcC---HhhHHHHHHHHHhhchHHHHHHHHHHHHHhc---------CC--
Q 038490 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT---LVTFGTLIYGLCLELRVDEALKLKEDIMRVY---------NV-- 219 (344)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~-- 219 (344)
.|..+...|-..|+++.|..+|++..+-..+-- ..+|......-.+..+++.|+++++...... +.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 456677777888888888888888776543311 2233333444455667778887776653210 00
Q ss_pred -----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCCh-
Q 038490 220 -----KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNS- 293 (344)
Q Consensus 220 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~- 293 (344)
..+..+|..++..--..|-++....+++.+.+..+. ++.+.......+-.+.-++++.+++++-...=..|++
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 112334556666666677788888888888776554 4443333333334444455555555544433222332
Q ss_pred hhHHHHHHHHhc---cCCHHHHHHHHHHHhhCCCCC
Q 038490 294 VTYNALISGFCK---EEDFEAAFTILDEMGDKGCKA 326 (344)
Q Consensus 294 ~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p 326 (344)
..|+..+.-+.+ ....+.|..+|++..+ |.+|
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 234444443332 1245666666666665 4544
No 86
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.06 E-value=1.9e-07 Score=85.75 Aligned_cols=235 Identities=10% Similarity=0.081 Sum_probs=186.7
Q ss_pred CcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCc---hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHH
Q 038490 44 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK---EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120 (344)
Q Consensus 44 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 120 (344)
|.....|-..|....+.++.++|++++++....-.+.-. ...|.++++.--..|.-+...++|+++.+.. -.-.+
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 347778999999999999999999999999875222222 2456677777777788899999999999853 22457
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcC---HhhHHHHHHHH
Q 038490 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT---LVTFGTLIYGL 197 (344)
Q Consensus 121 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 197 (344)
|..|...|.+.+..++|.++++.|.+........|...+..+.+..+-+.|..++.+..+. -|. .......+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHH
Confidence 8999999999999999999999998876678889999999999999999999999998876 233 23344445556
Q ss_pred HhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCcC
Q 038490 198 CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD--AGIYSSLISALFKAGRKN 275 (344)
Q Consensus 198 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 275 (344)
.+.|+.+.+..+|+..+..+ +--...|+.+++.-.++|+.+.++.+|+++...++.|- -..|...+..--+.|+-+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 78999999999999988754 55677899999999999999999999999999887654 245666666666677766
Q ss_pred cHHHHHHHH
Q 038490 276 EFPAILKEM 284 (344)
Q Consensus 276 ~a~~~~~~~ 284 (344)
.++.+=.++
T Consensus 1689 ~vE~VKarA 1697 (1710)
T KOG1070|consen 1689 NVEYVKARA 1697 (1710)
T ss_pred hHHHHHHHH
Confidence 555544443
No 87
>PLN02789 farnesyltranstransferase
Probab=99.06 E-value=5.1e-07 Score=73.39 Aligned_cols=220 Identities=8% Similarity=0.019 Sum_probs=166.5
Q ss_pred hcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCCh--hHH
Q 038490 95 RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG-KLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL--EDA 171 (344)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a 171 (344)
..++.++|+.+.+++++.+ +-+..+|+.--.++...| ++++++..++++....+.+..+|+.....+.+.|+. +++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 4467788999999998876 556667777767777777 689999999999988888888888776666667763 678
Q ss_pred HHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CC----hHHHHH
Q 038490 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV---GE----LSLALG 244 (344)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~----~~~a~~ 244 (344)
+..++++.+...+ +..+|+...-++...|+++++++.+.++++.. +.+...|+.....+.+. |. .++...
T Consensus 128 l~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 128 LEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 8999999887543 77788888888888999999999999998864 44566666655555444 22 246788
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHc----CCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccC-------------
Q 038490 245 VKEEMVRDKIEMDAGIYSSLISALFKA----GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE------------- 307 (344)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~------------- 307 (344)
...+++...+. |...|+.+...+... +...+|..++.+....++. +......|+..|+...
T Consensus 205 y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~~ 282 (320)
T PLN02789 205 YTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDTL 282 (320)
T ss_pred HHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 88788887655 888888888888773 4456798999887775433 6777888888887632
Q ss_pred -----CHHHHHHHHHHHh
Q 038490 308 -----DFEAAFTILDEMG 320 (344)
Q Consensus 308 -----~~~~a~~~~~~~~ 320 (344)
..++|.++++.+.
T Consensus 283 ~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 283 AEELSDSTLAQAVCSELE 300 (320)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 3478999999984
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.03 E-value=1.5e-07 Score=74.15 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=36.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 229 LIKGLCAVGELSLALGVKEEMVRDKIE--MDAGIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 229 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
+...+.+.|++.+|...++...+..+. .....+..+..++...|++++|...++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444566667777777777776654321 13456666677777777777777766666554
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=1.2e-07 Score=73.10 Aligned_cols=281 Identities=11% Similarity=0.075 Sum_probs=170.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHH
Q 038490 50 YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT-LLNPK 128 (344)
Q Consensus 50 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 128 (344)
+.+++..+.+..++..|++++....+.. +.+...++.|..+|....++..|...|+.+... -|...-|.. -.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 5566667788899999999999887752 347777888999999999999999999999875 354444443 34667
Q ss_pred HhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHH
Q 038490 129 LTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208 (344)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 208 (344)
.+.+.+..|+++...|.+.......+...-.......+++..+..++++....| +..+.........+.|+++.|.+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 778889999999988875321112222222233345677777777777765433 33344444444567788888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-------------CHH---------------H
Q 038490 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM-------------DAG---------------I 260 (344)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~---------------~ 260 (344)
-|+...+..|+.|- ..|+..+ +..+.|++..|++...++.+.|++- |+. .
T Consensus 166 kFqaAlqvsGyqpl-lAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 166 KFQAALQVSGYQPL-LAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHHhhcCCCch-hHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 88887777776664 3455444 3446677888888877777665431 111 1
Q ss_pred HHHHHHHHHHcCCcCcHHHHHHHHHHc-CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHh
Q 038490 261 YSSLISALFKAGRKNEFPAILKEMKER-GCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339 (344)
Q Consensus 261 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 339 (344)
+|.-...+.+.|+++.|.+.+-.|.-+ .-..|+.|...+.-.-. .+++-+..+-++-+...+. -...|+..++-.||
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyC 321 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHh
Confidence 222223345567777777766666322 12234455443322211 2233333333333333321 23456666666665
Q ss_pred hc
Q 038490 340 KD 341 (344)
Q Consensus 340 ~~ 341 (344)
++
T Consensus 322 KN 323 (459)
T KOG4340|consen 322 KN 323 (459)
T ss_pred hh
Confidence 54
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=8.5e-08 Score=80.26 Aligned_cols=254 Identities=10% Similarity=-0.029 Sum_probs=189.0
Q ss_pred HHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038490 53 IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132 (344)
Q Consensus 53 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 132 (344)
...-+.+.|++.+|.-.|+...+.. +-+...|..|.......++-..|+..+++..+.. +-+..+...|.-.|...|
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhh
Confidence 3455778899999999999988763 5567899999999999999999999999999987 677889999999999999
Q ss_pred ChHHHHHHHHHHhccCCCC---------cccHHHHHHHHHhhCChhHHHHHHHHHh-hCCCCcCHhhHHHHHHHHHhhch
Q 038490 133 KLDRMKELFQIMEKYVSPD---------ACSYNILIHGCVVSRRLEDAWKVFDEMV-KRRLQPTLVTFGTLIYGLCLELR 202 (344)
Q Consensus 133 ~~~~a~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 202 (344)
.-..|...++......++- ...-.. ..+.....+....++|-++. ..+..+|......|.-.|.-.|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 9999999998875543211 000000 12222233444555555544 44544677777778778899999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHH
Q 038490 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282 (344)
Q Consensus 203 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 282 (344)
+++|+..|+.+++.. +.|..+||.|...++...+.++|+..|++.++..+. -+.+...|.-+|...|.+++|...|-
T Consensus 446 fdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999999998753 556789999999999999999999999999998655 35555667778999999999999887
Q ss_pred HHHHc---------CCCCChhhHHHHHHHHhccCCHHHHHH
Q 038490 283 EMKER---------GCKPNSVTYNALISGFCKEEDFEAAFT 314 (344)
Q Consensus 283 ~~~~~---------~~~p~~~~~~~l~~~~~~~~~~~~a~~ 314 (344)
..+.. +..++...|.+|=.++.-.++.+-+.+
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 65432 112233466666666666666554433
No 91
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.02 E-value=9.7e-08 Score=82.08 Aligned_cols=235 Identities=14% Similarity=0.089 Sum_probs=184.6
Q ss_pred chhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch
Q 038490 4 SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE 83 (344)
Q Consensus 4 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 83 (344)
....++.++...|-...|+.+|+++ ..|.-+|.+|...|+-.+|..+..+..++ +|++
T Consensus 400 ~q~~laell~slGitksAl~I~Erl-------------------emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~ 457 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL-------------------EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDP 457 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH-------------------HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcc
Confidence 3456788899999999999999887 35778899999999999999998888773 6899
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038490 84 IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCV 163 (344)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (344)
..|..+.+......-+++|.++.+..... .-..+.....+.+++.++.+.|+.-....+....+|..+..+..
T Consensus 458 ~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~AL 530 (777)
T KOG1128|consen 458 RLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAAL 530 (777)
T ss_pred hhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHH
Confidence 99999999988888889999988865532 22333333445789999999999888877788889999999999
Q ss_pred hhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 038490 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243 (344)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 243 (344)
+.++++.|.+.|....... +-+...|+.+-.+|.+.++-.+|...+.+.++.. ..+...|-..+-...+.|.+++|.
T Consensus 531 qlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn--~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN--YQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC--CCCCeeeechhhhhhhcccHHHHH
Confidence 9999999999999877652 2256689999999999999999999999988754 445556666777778999999999
Q ss_pred HHHHHHHHCCC-CCCHHHHHHHHHHHHH
Q 038490 244 GVKEEMVRDKI-EMDAGIYSSLISALFK 270 (344)
Q Consensus 244 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 270 (344)
+.+.++..... ..|..+...++....+
T Consensus 608 ~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 608 KAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 99998875321 1244555555554443
No 92
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.00 E-value=8.1e-08 Score=82.56 Aligned_cols=221 Identities=15% Similarity=0.122 Sum_probs=171.4
Q ss_pred CCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHH
Q 038490 80 VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILI 159 (344)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 159 (344)
+|--..-..+...+...|-...|..+|+++. .|..++.+|...|+.++|..+..+..+ .+|+...|-.+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 3333444456777888888899998888765 477788889999998899888877776 558888888888
Q ss_pred HHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 038490 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239 (344)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 239 (344)
+......-+++|.++.+....+ .-..+.....+.+++.++.+.++.-++.. +.-..+|-.+-.+..+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhh
Confidence 8777777778888888765433 11112222344788999999998877654 34456787888888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038490 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319 (344)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 319 (344)
+.|.+.|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+. -+...|...+......|.+++|.+.+.++
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999999887654 788999999999999999999999999998874 36677888888888999999999999988
Q ss_pred hh
Q 038490 320 GD 321 (344)
Q Consensus 320 ~~ 321 (344)
.+
T Consensus 614 l~ 615 (777)
T KOG1128|consen 614 LD 615 (777)
T ss_pred HH
Confidence 64
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.1e-06 Score=71.63 Aligned_cols=310 Identities=12% Similarity=0.024 Sum_probs=188.8
Q ss_pred hhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCc-hhHH
Q 038490 8 LACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK-EIIF 86 (344)
Q Consensus 8 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 86 (344)
-+......|+++.|+..|-..+. ..++|...|..-..+|...|++++|++=-.+-.+ +.|+ ...|
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~-----------l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~---l~p~w~kgy 73 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIM-----------LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR---LNPDWAKGY 73 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHc-----------cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh---cCCchhhHH
Confidence 35667789999999999988733 3344888888889999999999999887766665 3455 5788
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----------------------------------
Q 038490 87 CNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG---------------------------------- 132 (344)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------------- 132 (344)
.....++.-.|++++|+..|.+-++.. +.+...+..+.+++....
T Consensus 74 ~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 74 SRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 888888889999999999999888765 455556666665552110
Q ss_pred --------------C---hHHHHHHHHHHh-----cc--------CCCC---------c-------------ccHHHHHH
Q 038490 133 --------------K---LDRMKELFQIME-----KY--------VSPD---------A-------------CSYNILIH 160 (344)
Q Consensus 133 --------------~---~~~a~~~~~~~~-----~~--------~~~~---------~-------------~~~~~l~~ 160 (344)
+ +..+...+.... .. ..|. . .-...+.+
T Consensus 153 ~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 153 EIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred HHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 0 000111100000 00 0000 0 00122333
Q ss_pred HHHhhCChhHHHHHHHHHhhC---------------------------------CCCcCHhhHHHH-------HHHHHhh
Q 038490 161 GCVVSRRLEDAWKVFDEMVKR---------------------------------RLQPTLVTFGTL-------IYGLCLE 200 (344)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~---------------------------------~~~~~~~~~~~l-------~~~~~~~ 200 (344)
+..+..++..|.+-+...... |.. ...-|+.+ ..++.+.
T Consensus 233 aaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhH
Confidence 334444455555444444332 111 11112222 2345556
Q ss_pred chHHHHHHHHHHHHHhcCCCCCHHH-------------------------HHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 038490 201 LRVDEALKLKEDIMRVYNVKPDGQV-------------------------FASLIKGLCAVGELSLALGVKEEMVRDKIE 255 (344)
Q Consensus 201 ~~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 255 (344)
++++.++..|.+.+..+. .|+... ...-...+.+.|++..|...|.++++..+.
T Consensus 312 ~~~~~ai~~~~kaLte~R-t~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~ 390 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHR-TPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE 390 (539)
T ss_pred HhHHHHHHHHHHHhhhhc-CHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 777888888777654422 222211 111134456778888899999888888755
Q ss_pred CCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 038490 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335 (344)
Q Consensus 256 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll 335 (344)
|...|..-.-+|.+.|.+..|+.-.+...+.+. +....|.-=..++....+++.|.+.|++..+.. |+..-+.--+
T Consensus 391 -Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~ 466 (539)
T KOG0548|consen 391 -DARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGY 466 (539)
T ss_pred -hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHH
Confidence 888888888888888888888888887777632 234445444555556678888888888887753 5444444333
Q ss_pred HHH
Q 038490 336 GGL 338 (344)
Q Consensus 336 ~~~ 338 (344)
.-|
T Consensus 467 ~rc 469 (539)
T KOG0548|consen 467 RRC 469 (539)
T ss_pred HHH
Confidence 333
No 94
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.99 E-value=2.6e-07 Score=69.94 Aligned_cols=119 Identities=16% Similarity=0.204 Sum_probs=69.6
Q ss_pred hchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCC--cCc
Q 038490 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL-FKAGR--KNE 276 (344)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~ 276 (344)
.++.+++...++..++.. +.+...|..+...|...|++++|...+++..+..+. +...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHH
Confidence 444455555555555432 445566666666666666666666666666665543 555555555543 44455 356
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 038490 277 FPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322 (344)
Q Consensus 277 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 322 (344)
|.+++++..+.+.. +...+..+...+.+.|++++|...|+++.+.
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666665433 5555566666666666666666666666654
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.98 E-value=2.1e-06 Score=67.75 Aligned_cols=266 Identities=11% Similarity=0.020 Sum_probs=197.3
Q ss_pred chhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhH-HHHHHHHHhcCCchHHHHHHHHhhhcCCCCCc
Q 038490 4 SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHY-DLIITKLGRAKMFDEMQQILHQLKHDTRIVPK 82 (344)
Q Consensus 4 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 82 (344)
++.+-++.|...|+...|+.-|.++.+.. ||...- -.-...+.+.|.+++|..-|+.+.... |+
T Consensus 74 aifrRaT~yLAmGksk~al~Dl~rVlelK------------pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~---~s 138 (504)
T KOG0624|consen 74 AIFRRATVYLAMGKSKAALQDLSRVLELK------------PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE---PS 138 (504)
T ss_pred HHHHHHHHHhhhcCCccchhhHHHHHhcC------------ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC---CC
Confidence 34555777888888888888888875432 343322 223456788999999999999998753 32
Q ss_pred h----hH------------HHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 038490 83 E----II------------FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK 146 (344)
Q Consensus 83 ~----~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 146 (344)
. .. ....+..+...|+...|+.....+++.. +-+...+..=..+|...|+...|+.=++...+
T Consensus 139 ~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ask 217 (504)
T KOG0624|consen 139 NGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASK 217 (504)
T ss_pred cchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 1 11 2223445667899999999999999875 67888888889999999999999998888877
Q ss_pred cCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhH----HHH---------HHHHHhhchHHHHHHHHHHH
Q 038490 147 YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF----GTL---------IYGLCLELRVDEALKLKEDI 213 (344)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l---------~~~~~~~~~~~~a~~~~~~~ 213 (344)
....++.++.-+-..+...|+.+.++..+++.++. .||...+ ..+ +......++|.++....+.+
T Consensus 218 Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~v 295 (504)
T KOG0624|consen 218 LSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKV 295 (504)
T ss_pred ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 66678888888889999999999999999998876 4554321 111 12334567788888888887
Q ss_pred HHhcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcC
Q 038490 214 MRVYNVKP--DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288 (344)
Q Consensus 214 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 288 (344)
++...-.+ ....+..+..++...+++.+|++.-.++++.... |+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 296 lk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 296 LKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 76532111 1234556777888899999999999999887533 68888888889998889999999998887764
No 96
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.97 E-value=7.7e-06 Score=69.89 Aligned_cols=270 Identities=11% Similarity=0.089 Sum_probs=159.8
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038490 47 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126 (344)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 126 (344)
...|...+..+.++|++..-...|++....-.+......|...+......+-++-+.++|++.++. ++..-+..+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 345777777778888888888888887765334444566777777777777777888888877753 3333566666
Q ss_pred HHHhcCChHHHHHHHHHHhccC-------C------------------------------------C--CcccHHHHHHH
Q 038490 127 PKLTCGKLDRMKELFQIMEKYV-------S------------------------------------P--DACSYNILIHG 161 (344)
Q Consensus 127 ~~~~~~~~~~a~~~~~~~~~~~-------~------------------------------------~--~~~~~~~l~~~ 161 (344)
.++..+++++|.+.+..+.... + + -...|..|...
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 6777777777776665543210 0 1 12246788899
Q ss_pred HHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhh-----------------------------------------
Q 038490 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE----------------------------------------- 200 (344)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------------------------- 200 (344)
|.+.|.+++|..+|++.... ..+..-|+.+.++|+.-
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 99999999999999987665 22334444444444321
Q ss_pred -------------------------chHHHHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038490 201 -------------------------LRVDEALKLKEDIMRVYNVKP------DGQVFASLIKGLCAVGELSLALGVKEEM 249 (344)
Q Consensus 201 -------------------------~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 249 (344)
|+..+-...+.++.+. +.| -...|..+...|-..|+++.|..+|++.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc--cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 1122222222222221 111 1123566667777778888888888877
Q ss_pred HHCCCCCC---HHHHHHHHHHHHHcCCcCcHHHHHHHHHHcC-----------CCC------ChhhHHHHHHHHhccCCH
Q 038490 250 VRDKIEMD---AGIYSSLISALFKAGRKNEFPAILKEMKERG-----------CKP------NSVTYNALISGFCKEEDF 309 (344)
Q Consensus 250 ~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------~~p------~~~~~~~l~~~~~~~~~~ 309 (344)
.+...+-- ..+|..-...-.++.+++.|.+++++....- .++ +...|..+++..-..|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 76544311 3345555555566667777777766654321 011 122234444444456667
Q ss_pred HHHHHHHHHHhhCCC
Q 038490 310 EAAFTILDEMGDKGC 324 (344)
Q Consensus 310 ~~a~~~~~~~~~~~~ 324 (344)
+....+|+++.+..+
T Consensus 494 estk~vYdriidLri 508 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRI 508 (835)
T ss_pred HHHHHHHHHHHHHhc
Confidence 777777777765443
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.96 E-value=2.6e-07 Score=72.77 Aligned_cols=189 Identities=9% Similarity=-0.040 Sum_probs=129.6
Q ss_pred CcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch---hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCH--
Q 038490 44 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE---IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV-- 118 (344)
Q Consensus 44 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 118 (344)
......+...+..+...|++++|...|+++.... +.+. ..+..+..++...|++++|...++.+.+.. +.+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCch
Confidence 3366677888888999999999999999987753 2222 456777888889999999999999998764 2222
Q ss_pred -HHHHHHHHHHHhc--------CChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhh
Q 038490 119 -KFFNTLLNPKLTC--------GKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189 (344)
Q Consensus 119 -~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 189 (344)
.++..+..++... |+.+.|...++.+....+.+...+..+.......+ ... ..
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----------~~~--------~~ 168 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----------RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----------HHH--------HH
Confidence 2455555555544 67888888888887765544444433322111000 000 01
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 038490 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKP-DGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253 (344)
Q Consensus 190 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 253 (344)
...+...+.+.|++++|...++.+++...-.| ....+..+..++.+.|++++|...++.+....
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 12455678889999999999999887643223 35788889999999999999999988887653
No 98
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.5e-05 Score=67.45 Aligned_cols=316 Identities=10% Similarity=0.061 Sum_probs=185.2
Q ss_pred hhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhh--cC---------
Q 038490 9 ACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH--DT--------- 77 (344)
Q Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~--------- 77 (344)
+..+.++|++++|++...++... .+.+..++..-+-++.+.+++++|+.+.+.-.. ..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~-----------~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAY 87 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSI-----------VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAY 87 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhc-----------CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHH
Confidence 44566788999999998888433 344677777777777888888887766543221 00
Q ss_pred ----------------CCCCc-hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCC------------------------
Q 038490 78 ----------------RIVPK-EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQM------------------------ 116 (344)
Q Consensus 78 ----------------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------ 116 (344)
|..++ ..+...-...+.+.+++++|..+|+.+.+.+.+.
T Consensus 88 c~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred HHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 11111 1233344556778899999999999885443210
Q ss_pred ---CHHHHHHH---HHHHHhcCChHHHHHHHHHHhccCC-------CCcc--------cHHHHHHHHHhhCChhHHHHHH
Q 038490 117 ---TVKFFNTL---LNPKLTCGKLDRMKELFQIMEKYVS-------PDAC--------SYNILIHGCVVSRRLEDAWKVF 175 (344)
Q Consensus 117 ---~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~--------~~~~l~~~~~~~~~~~~a~~~~ 175 (344)
...+|..+ ...+...|++.+|+++++...+.+. .+.. .--.+.-.+-..|+.++|..++
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 01123322 2345567889999998887732211 1101 1122344566788999999988
Q ss_pred HHHhhCCCCcCHhh----HHHHH-----------------------------------------------HHH-------
Q 038490 176 DEMVKRRLQPTLVT----FGTLI-----------------------------------------------YGL------- 197 (344)
Q Consensus 176 ~~~~~~~~~~~~~~----~~~l~-----------------------------------------------~~~------- 197 (344)
....+.... |... -|.++ ..+
T Consensus 248 ~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~ 326 (652)
T KOG2376|consen 248 VDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQV 326 (652)
T ss_pred HHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 888776422 2211 00000 000
Q ss_pred -----------------------H--hhchHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHH----
Q 038490 198 -----------------------C--LELRVDEALKLKEDIMRVYNVKPD-GQVFASLIKGLCAVGELSLALGVKE---- 247 (344)
Q Consensus 198 -----------------------~--~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~---- 247 (344)
. +...+..+..++....+ +.+.. ..+.-.+++.....|+++.|.+++.
T Consensus 327 r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 327 RELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 0 00012222222222111 11111 2344455666778899999999888
Q ss_pred ----HHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc--CCCCChhhHHH----HHHHHhccCCHHHHHHHHH
Q 038490 248 ----EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER--GCKPNSVTYNA----LISGFCKEEDFEAAFTILD 317 (344)
Q Consensus 248 ----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~----l~~~~~~~~~~~~a~~~~~ 317 (344)
.+.+.+. .+.+...++..+.+.++-+.|..++.+.... .-.+.....+. +...-.+.|+-++|..+++
T Consensus 405 ~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le 482 (652)
T KOG2376|consen 405 SWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE 482 (652)
T ss_pred hhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence 5555443 3455566777788888888888888876542 11122222333 3334457799999999999
Q ss_pred HHhhCCCCCChhhHHHHHHHHhhc
Q 038490 318 EMGDKGCKANPISYNVILGGLCKD 341 (344)
Q Consensus 318 ~~~~~~~~p~~~~~~~ll~~~~~~ 341 (344)
++.+.+ ++|..+...++.+|++.
T Consensus 483 el~k~n-~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 483 ELVKFN-PNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHhC-CchHHHHHHHHHHHHhc
Confidence 999853 57899999999999864
No 99
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.93 E-value=1.6e-06 Score=73.81 Aligned_cols=306 Identities=14% Similarity=0.064 Sum_probs=201.7
Q ss_pred hhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHH
Q 038490 9 ACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN 88 (344)
Q Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 88 (344)
+.-+-..+++..-+++.+.+... ++....+.....-.+...|+-++|......-.+. -.-+...|..
T Consensus 14 ~lk~yE~kQYkkgLK~~~~iL~k-----------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--d~~S~vCwHv 80 (700)
T KOG1156|consen 14 ALKCYETKQYKKGLKLIKQILKK-----------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--DLKSHVCWHV 80 (700)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHh-----------CCccchhHHhccchhhcccchHHHHHHHHHHhcc--CcccchhHHH
Confidence 34445567777777777776432 3334455555556677789999999998887763 2446677888
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCCh
Q 038490 89 VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168 (344)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (344)
+.-.+....++++|++.|......+ +.|..++.-+.-.-++.|+++........+.+..+.....|..++.++.-.|+.
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999887 778888888888888889999888888888777777778899999999999999
Q ss_pred hHHHHHHHHHhhCC-CCcCHhhHHHHH------HHHHhhchHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCChH
Q 038490 169 EDAWKVFDEMVKRR-LQPTLVTFGTLI------YGLCLELRVDEALKLKEDIMRVYNVKPDGQ-VFASLIKGLCAVGELS 240 (344)
Q Consensus 169 ~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 240 (344)
..|..++++..+.. -.|+...+.... ....+.|..++|.+.+..... . ..|.. .-..-...+.+.++++
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~--~-i~Dkla~~e~ka~l~~kl~~lE 236 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK--Q-IVDKLAFEETKADLLMKLGQLE 236 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh--H-HHHHHHHhhhHHHHHHHHhhHH
Confidence 99999999988764 246665554333 233566777888777765322 1 22222 2234456678899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHH-HHHHHHHHcCCCCChhhHHHH-HHHHhccCCHHHHHHHHHH
Q 038490 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP-AILKEMKERGCKPNSVTYNAL-ISGFCKEEDFEAAFTILDE 318 (344)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~ 318 (344)
+|..++..+...++. +...|..+..++.+--+.-++. .+|....+. .|-...-..+ +.......-.+..-.++..
T Consensus 237 eA~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~ 313 (700)
T KOG1156|consen 237 EAVKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRP 313 (700)
T ss_pred hHHHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHH
Confidence 999999999987533 4444444555554333333444 666665553 1111111111 1111112223445556667
Q ss_pred HhhCCCCCChhhHHHH
Q 038490 319 MGDKGCKANPISYNVI 334 (344)
Q Consensus 319 ~~~~~~~p~~~~~~~l 334 (344)
+.+.|+++-.....+|
T Consensus 314 ~l~Kg~p~vf~dl~SL 329 (700)
T KOG1156|consen 314 LLSKGVPSVFKDLRSL 329 (700)
T ss_pred HhhcCCCchhhhhHHH
Confidence 7777776644444443
No 100
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.92 E-value=9.7e-08 Score=72.28 Aligned_cols=162 Identities=13% Similarity=0.025 Sum_probs=136.1
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (344)
|... ......+.-.|+-+....+....... .+-+.......+....+.|++..|...+++..... ++|..+|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence 5555 56677788888888888888876553 34566677778999999999999999999998877 88899999999
Q ss_pred HHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHH
Q 038490 126 NPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205 (344)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (344)
-+|.+.|+++.|..-|.+..+..+.+....+.+.-.+.-.|+.+.|..++......+.. |...-..+.......|+++.
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence 99999999999999999998888888888999999999999999999999998877533 66666677778889999999
Q ss_pred HHHHHHH
Q 038490 206 ALKLKED 212 (344)
Q Consensus 206 a~~~~~~ 212 (344)
|..+...
T Consensus 221 A~~i~~~ 227 (257)
T COG5010 221 AEDIAVQ 227 (257)
T ss_pred HHhhccc
Confidence 9988766
No 101
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=4.9e-06 Score=63.37 Aligned_cols=173 Identities=13% Similarity=0.117 Sum_probs=107.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCC
Q 038490 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183 (344)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (344)
++.+.+.......+......-...|...|++++|++..... .+......=+..+.+..+.+-|.+.+++|.+..
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 34444444433333333333445677777888887777653 244444444566667777888888888887652
Q ss_pred CcCHhhHHHHHHHHHh----hchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 038490 184 QPTLVTFGTLIYGLCL----ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259 (344)
Q Consensus 184 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 259 (344)
+..|.+.|..++.+ .+.+.+|.-+|+++-+ ..+|+..+.+...-++...|++++|..+++........ ++.
T Consensus 168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpe 242 (299)
T KOG3081|consen 168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPE 242 (299)
T ss_pred --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHH
Confidence 55566656665554 3467778888877544 35777777777777778888888888888888777655 566
Q ss_pred HHHHHHHHHHHcCCcCc-HHHHHHHHHHc
Q 038490 260 IYSSLISALFKAGRKNE-FPAILKEMKER 287 (344)
Q Consensus 260 ~~~~l~~~~~~~g~~~~-a~~~~~~~~~~ 287 (344)
+...++..-...|...+ ..+.+..++..
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 66555555555554433 34455555544
No 102
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.91 E-value=4.2e-07 Score=68.91 Aligned_cols=165 Identities=11% Similarity=0.065 Sum_probs=138.2
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHH
Q 038490 82 KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161 (344)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 161 (344)
|... ..+-..+...|+-+....+........ +.+......++....+.|++..|...+++.....++|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 4444 667788888899888888887765443 55666777799999999999999999999999999999999999999
Q ss_pred HHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 038490 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241 (344)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 241 (344)
|.+.|+++.|..-|.+..+.-.. +...++.+...+.-.|+.+.|..++...... -.-|..+-..+.......|++++
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHH
Confidence 99999999999999999887333 6667788888889999999999999886543 24477888889999999999999
Q ss_pred HHHHHHHHHH
Q 038490 242 ALGVKEEMVR 251 (344)
Q Consensus 242 a~~~~~~~~~ 251 (344)
|.++...-..
T Consensus 221 A~~i~~~e~~ 230 (257)
T COG5010 221 AEDIAVQELL 230 (257)
T ss_pred HHhhcccccc
Confidence 9998766554
No 103
>PF12854 PPR_1: PPR repeat
Probab=98.91 E-value=2.1e-09 Score=55.35 Aligned_cols=32 Identities=53% Similarity=1.139 Sum_probs=23.4
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038490 288 GCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319 (344)
Q Consensus 288 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 319 (344)
|+.||..||+++|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777766
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.88 E-value=2.1e-06 Score=77.04 Aligned_cols=233 Identities=12% Similarity=0.077 Sum_probs=157.4
Q ss_pred hHHHHHHHHHHhcccHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 038490 84 IIFCNVIGFYGRARLLERAL-QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGC 162 (344)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (344)
.....+=.+.+..|..++|- +++.++. .++....+......++.-........+.+...+..|....
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~ 96 (694)
T PRK15179 29 TILDLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARAL 96 (694)
T ss_pred HHHhHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHH
Confidence 33333444555666666553 3333322 1233333333333333333333333446688889999999
Q ss_pred HhhCChhHHHHHHHHHhhCCCCc-CHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 038490 163 VVSRRLEDAWKVFDEMVKRRLQP-TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241 (344)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 241 (344)
.+.|.+++|+.+++...+. .| +......+...+.+.+++++|...+++.++.. +.+......+..++.+.|++++
T Consensus 97 ~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 97 EAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHhcchHH
Confidence 9999999999999999887 34 44566677788899999999999999988643 4556777888888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 038490 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 242 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
|..+|+++...++. +..++..+...+...|+.++|...|++..+.. .|...-|+.++. +...-..+++++.-
T Consensus 173 A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~ 244 (694)
T PRK15179 173 ADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNADLAALRRLGV 244 (694)
T ss_pred HHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHHHHHHHHHcCc
Confidence 99999999985443 68889999999999999999999999987762 234455555443 34445556666643
Q ss_pred ----CCCCCChhhHHHHHHHHhh
Q 038490 322 ----KGCKANPISYNVILGGLCK 340 (344)
Q Consensus 322 ----~~~~p~~~~~~~ll~~~~~ 340 (344)
.|...........|.-|.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 245 EGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred ccccCCCceeeeeHHHHHHHHhh
Confidence 2334444555555555443
No 105
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=9.2e-07 Score=68.38 Aligned_cols=291 Identities=15% Similarity=0.052 Sum_probs=178.7
Q ss_pred hhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchh
Q 038490 5 SIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI 84 (344)
Q Consensus 5 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 84 (344)
+...+..+.+..++..|++++..-.+.. +.+......+..+|-...++..|-+.++++... .|...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-----------p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~ 78 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-----------PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELE 78 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHH
Confidence 3445556677888999999998764443 237778888999999999999999999999764 46555
Q ss_pred HHHH-HHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHH
Q 038490 85 IFCN-VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN--PKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161 (344)
Q Consensus 85 ~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 161 (344)
-|.. -...+.+.+.+..|+++...|.+. ++...-..-+. .....+++..+..++++.... .+..+.+.....
T Consensus 79 qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCl 153 (459)
T KOG4340|consen 79 QYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCL 153 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cccchhccchhe
Confidence 4443 345566788889999998887752 22221111222 223457777777777766532 233444444555
Q ss_pred HHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCC-------------CCHH----
Q 038490 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK-------------PDGQ---- 224 (344)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~~---- 224 (344)
..+.|+++.|.+-|+...+-+.--....|+..+ +..+.++++.|.+...++++. |++ ||+.
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccc
Confidence 567888888888888877654333455676555 456677888888887776543 221 1111
Q ss_pred ----HHHHHH-------HHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCC
Q 038490 225 ----VFASLI-------KGLCAVGELSLALGVKEEMVRD-KIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292 (344)
Q Consensus 225 ----~~~~l~-------~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 292 (344)
.-+.++ ..+.+.|+++.|.+.+..|-.. ....|+.|...+.-.= -.+++.+..+-+.-+...++- .
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P 309 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-P 309 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-C
Confidence 122233 3345677888887777666422 2234555554433221 134455555555555555442 4
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHH
Q 038490 293 SVTYNALISGFCKEEDFEAAFTILDE 318 (344)
Q Consensus 293 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 318 (344)
..||..++-.|++..-++-|-.++-+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 46677777777777666666665543
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.86 E-value=2.5e-06 Score=77.46 Aligned_cols=234 Identities=13% Similarity=0.106 Sum_probs=151.6
Q ss_pred CcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch-hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHH
Q 038490 44 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE-IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122 (344)
Q Consensus 44 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 122 (344)
+.+...|..|+..+...+++++|.++.+..... .|+. ..|-.+...+.+.++...+..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------- 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL----------------- 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh-----------------
Confidence 457778999999999999999999999977764 3443 3344444466666665555444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhch
Q 038490 123 TLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR 202 (344)
Q Consensus 123 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 202 (344)
.++.......++..+..+...+... ..+..++..+..+|-+.|+.++|..+|+++.+.. +-+....|.+...|+.. +
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~-~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLY-GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhh-hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 2333333444444444444444432 2444577888888999999999999999988886 44778888888888888 8
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-----HhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcCc
Q 038490 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGL-----CAVGELSLALGVKEEMVRD-KIEMDAGIYSSLISALFKAGRKNE 276 (344)
Q Consensus 203 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 276 (344)
.++|.+++.+++... .+..-|+.+...+ ....+.+.-..+.+.+... +..--..++-.+-..|....++++
T Consensus 165 L~KA~~m~~KAV~~~---i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 165 KEKAITYLKKAIYRF---IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HHHHHHHHHHHHHHH---HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 999988888876541 1111122211111 1222334444444444432 333344556666678888889999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 038490 277 FPAILKEMKERGCKPNSVTYNALISGFC 304 (344)
Q Consensus 277 a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 304 (344)
+..+++.+.+.... |.....-++.+|.
T Consensus 242 ~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 242 VIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 99999999988655 6677777888776
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.85 E-value=3.4e-07 Score=69.31 Aligned_cols=156 Identities=11% Similarity=0.094 Sum_probs=117.8
Q ss_pred HHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038490 54 ITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133 (344)
Q Consensus 54 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 133 (344)
+-.|...|+++.+....+.+.. |. ..+...++.+++...++...+.+ +.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~-----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD-----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC-----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Confidence 3467788888887665533322 11 01223667788888888888776 7788899999999999999
Q ss_pred hHHHHHHHHHHhccCCCCcccHHHHHHH-HHhhCC--hhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHH
Q 038490 134 LDRMKELFQIMEKYVSPDACSYNILIHG-CVVSRR--LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210 (344)
Q Consensus 134 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 210 (344)
++.|...+++.....+.+...+..+..+ +...|+ .++|.+++++..+.+.. +...+..+...+...|++++|+..|
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999988888888888888876 467677 48999999999887543 6677778888888999999999999
Q ss_pred HHHHHhcCCCCCHHHH
Q 038490 211 EDIMRVYNVKPDGQVF 226 (344)
Q Consensus 211 ~~~~~~~~~~~~~~~~ 226 (344)
+++++.. +|+..-+
T Consensus 168 ~~aL~l~--~~~~~r~ 181 (198)
T PRK10370 168 QKVLDLN--SPRVNRT 181 (198)
T ss_pred HHHHhhC--CCCccHH
Confidence 9988754 4444333
No 108
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.85 E-value=3e-06 Score=77.00 Aligned_cols=176 Identities=10% Similarity=0.049 Sum_probs=104.3
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCC
Q 038490 88 NVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRR 167 (344)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (344)
.++.......++..+..++..+... .-+...+..+..+|-+.|+.+++..+++++.+..+.++.+.|.+.-.|... +
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h
Confidence 3444444444444444444444442 233445566666666666666666666666666666666666666666666 6
Q ss_pred hhHHHHHHHHHhhCCCCcCHhhHHHHHHHH-----HhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHH
Q 038490 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGL-----CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242 (344)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 242 (344)
+++|++++.+....-+ +..-|+.+...+ +...+.+.-.++.+.+..+.+..--..++-.+-..|.+.++++++
T Consensus 165 L~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 165 KEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 6666666666554311 111122222111 112334444455555555445555566777788888999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038490 243 LGVKEEMVRDKIEMDAGIYSSLISALF 269 (344)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ 269 (344)
..+++.+.+...+ |.....-++.+|.
T Consensus 243 i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 243 IYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 9999999998765 7777777888776
No 109
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=2.4e-06 Score=67.75 Aligned_cols=98 Identities=14% Similarity=0.160 Sum_probs=49.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHH-HHHHhcc
Q 038490 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS-SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL-ISGFCKE 306 (344)
Q Consensus 229 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~ 306 (344)
+.++++..|++.+|+++|-.+....++ |..+|. .|.++|.+.+.++-|++++-++... .+..+...+ ...|.+.
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHH
Confidence 445555566666666666555544444 334443 3445666666666665555443321 122222222 2355566
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHH
Q 038490 307 EDFEAAFTILDEMGDKGCKANPISYN 332 (344)
Q Consensus 307 ~~~~~a~~~~~~~~~~~~~p~~~~~~ 332 (344)
+.+=-|-+.|+.+... .|++.-|.
T Consensus 475 ~eFyyaaKAFd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEIL--DPTPENWE 498 (557)
T ss_pred HHHHHHHHhhhHHHcc--CCCccccC
Confidence 6666666666655543 45555443
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.84 E-value=1.6e-06 Score=77.65 Aligned_cols=135 Identities=10% Similarity=-0.031 Sum_probs=94.2
Q ss_pred CCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHH
Q 038490 80 VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILI 159 (344)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 159 (344)
+.+...+..|.....+.|..++|..+++...+.. |-+......+...+.+.+++++|...+++.....+.+......+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 4456666777777777777777777777777664 444566666777777777777777777777777666677777777
Q ss_pred HHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 038490 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216 (344)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 216 (344)
.++.+.|++++|..+|+++...+ +-+..++..+..++-..|+.++|...|+..+..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777777632 224566666666777777777777777776654
No 111
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.83 E-value=1.6e-05 Score=69.37 Aligned_cols=253 Identities=15% Similarity=0.002 Sum_probs=171.1
Q ss_pred chHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 038490 63 FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQ 142 (344)
Q Consensus 63 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 142 (344)
..++++.+++..+..+..|+. ...+.--|+..++.+.|.+...+..+.+-..+...|..|.-++...+++..|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~--if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLV--IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchH--HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 345777788877654444444 334555677899999999999999998557788999999999999999999999998
Q ss_pred HHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhh------------------------------------------
Q 038490 143 IMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK------------------------------------------ 180 (344)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------------------------ 180 (344)
......+.|-.....-+..-...++.++++.....+..
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 76554332211111111111112222222211111100
Q ss_pred ---------CC---------CCc--C------HhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038490 181 ---------RR---------LQP--T------LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234 (344)
Q Consensus 181 ---------~~---------~~~--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 234 (344)
.| ..| + ...|......+.+.+..++|...+.+.-+ -.+.....|......+.
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLE 695 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHH
Confidence 00 001 1 11233334455666777777666655433 22445566666667778
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHH--HHHHHHHcCCCCChhhHHHHHHHHhccCCHHHH
Q 038490 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA--ILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312 (344)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 312 (344)
..|..++|.+.|......++. ++....++...+.+.|+..-|.. ++.++.+.+.. +...|-.+...+.+.|+.++|
T Consensus 696 ~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHH
Confidence 889999999999988887655 77888999999999998888887 89999888754 888999999999999999999
Q ss_pred HHHHHHHhh
Q 038490 313 FTILDEMGD 321 (344)
Q Consensus 313 ~~~~~~~~~ 321 (344)
...|+....
T Consensus 774 aecf~aa~q 782 (799)
T KOG4162|consen 774 AECFQAALQ 782 (799)
T ss_pred HHHHHHHHh
Confidence 999988765
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.81 E-value=1e-05 Score=76.84 Aligned_cols=311 Identities=13% Similarity=-0.004 Sum_probs=194.9
Q ss_pred hhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCc--chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch-
Q 038490 7 RLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRY--NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE- 83 (344)
Q Consensus 7 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 83 (344)
..+..+...|++++|...+.......... .....+ .......+...+...|++++|...++....... ..+.
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~ 488 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDR----NIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP-LTWYY 488 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhcccc----CcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHH
Confidence 34555667889999888887652221100 000011 122233344566789999999999998765311 1111
Q ss_pred ---hHHHHHHHHHHhcccHHHHHHHHHHHHhcCC---CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhcc----CCCC
Q 038490 84 ---IIFCNVIGFYGRARLLERALQMFDEMSSFNV---QM--TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY----VSPD 151 (344)
Q Consensus 84 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 151 (344)
...+.+...+...|++++|...+++.....- .+ ...+...+...+...|+++.|...+++.... +.++
T Consensus 489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 568 (903)
T PRK04841 489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ 568 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 2345566677889999999999988874310 11 1234556677788899999999988876542 1111
Q ss_pred ----cccHHHHHHHHHhhCChhHHHHHHHHHhhC--CCCc--CHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCH
Q 038490 152 ----ACSYNILIHGCVVSRRLEDAWKVFDEMVKR--RLQP--TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223 (344)
Q Consensus 152 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 223 (344)
...+..+...+...|++++|...+++.... ...+ ....+..+...+...|+.++|...+.+...........
T Consensus 569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 223445556677889999999999887553 1112 23334445567778999999999998865431111111
Q ss_pred HHH-----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCcCcHHHHHHHHHHc----CCCC
Q 038490 224 QVF-----ASLIKGLCAVGELSLALGVKEEMVRDKIEMD---AGIYSSLISALFKAGRKNEFPAILKEMKER----GCKP 291 (344)
Q Consensus 224 ~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p 291 (344)
..+ ...+..+...|+.+.|...+........... ...+..+..++...|+.++|...+++.... |..+
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~ 728 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS 728 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence 111 1122444568899999998877654221111 112345677888899999999999987653 3222
Q ss_pred -ChhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 038490 292 -NSVTYNALISGFCKEEDFEAAFTILDEMGDK 322 (344)
Q Consensus 292 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 322 (344)
...+...+..++.+.|+.++|...+.+..+.
T Consensus 729 ~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 729 DLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1235566677888999999999999998764
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.80 E-value=7.6e-07 Score=63.83 Aligned_cols=95 Identities=7% Similarity=-0.126 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhh
Q 038490 86 FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165 (344)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (344)
+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+......+.+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 4445666677777777777777777765 556777777777777777777777777777777667777777777777777
Q ss_pred CChhHHHHHHHHHhhC
Q 038490 166 RRLEDAWKVFDEMVKR 181 (344)
Q Consensus 166 ~~~~~a~~~~~~~~~~ 181 (344)
|++++|...|+.....
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777777777777665
No 114
>PF12854 PPR_1: PPR repeat
Probab=98.79 E-value=5.3e-09 Score=53.82 Aligned_cols=32 Identities=38% Similarity=0.484 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHH
Q 038490 253 KIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284 (344)
Q Consensus 253 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 284 (344)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444555555555555555555555544444
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.79 E-value=5.5e-07 Score=64.54 Aligned_cols=113 Identities=10% Similarity=-0.110 Sum_probs=96.9
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038490 47 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126 (344)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 126 (344)
+..+......+...|++++|...|+...... +.+...+..+..++...|++++|...|+.....+ +.+...+..+..
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~ 100 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGV 100 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 3346667889999999999999999998753 5578889999999999999999999999999987 778899999999
Q ss_pred HHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 038490 127 PKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGC 162 (344)
Q Consensus 127 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (344)
++...|++++|...|+......+.+...+.....+.
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 999999999999999999887776666665544443
No 116
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.9e-05 Score=65.05 Aligned_cols=283 Identities=11% Similarity=0.018 Sum_probs=186.9
Q ss_pred HHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038490 54 ITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133 (344)
Q Consensus 54 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 133 (344)
..+.+..|+++.|...|-..+... ++|...|..-..+|+..|++++|++--.+..+.. |.-...|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhccc
Confidence 346678899999999999988753 6678889999999999999999999888888765 4456789999999999999
Q ss_pred hHHHHHHHHHHhccCCCCcccHHHHHHHHHhhC-----------------------------------------------
Q 038490 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSR----------------------------------------------- 166 (344)
Q Consensus 134 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------------------------------- 166 (344)
+++|...|.+-.+..+.+...++-+..++....
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 999999999888777666666666665552110
Q ss_pred -ChhHHHHHHHHHhh--------CC-------CCc------------C----------HhhHHHHHHHHHhhchHHHHHH
Q 038490 167 -RLEDAWKVFDEMVK--------RR-------LQP------------T----------LVTFGTLIYGLCLELRVDEALK 208 (344)
Q Consensus 167 -~~~~a~~~~~~~~~--------~~-------~~~------------~----------~~~~~~l~~~~~~~~~~~~a~~ 208 (344)
+.+..+...-.+.. .| ..| | ..-...+..+..+..+++.|.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 00011111111000 00 011 0 0113344555566677778888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-------HHHHHcCCcCcHHHHH
Q 038490 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI-------SALFKAGRKNEFPAIL 281 (344)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~g~~~~a~~~~ 281 (344)
-+...+... .+..-++....+|...|.+.++...-....+.|-. ...-|+.+. .+|.+.++++.++..|
T Consensus 246 ~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 246 HYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 777766542 44555666777788888887777776666665533 333333333 3555567778888888
Q ss_pred HHHHHcCCCCChhhH-------------------------HHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 038490 282 KEMKERGCKPNSVTY-------------------------NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336 (344)
Q Consensus 282 ~~~~~~~~~p~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 336 (344)
.+.......|+...- ..-...+.+.|++..|+..|.++++.. +-|...|+.-.-
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAa 400 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAA 400 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHH
Confidence 776554433333221 112345667889999999999998875 346777887777
Q ss_pred HHhhcCCC
Q 038490 337 GLCKDGKC 344 (344)
Q Consensus 337 ~~~~~g~~ 344 (344)
+|.+.|++
T Consensus 401 c~~kL~~~ 408 (539)
T KOG0548|consen 401 CYLKLGEY 408 (539)
T ss_pred HHHHHhhH
Confidence 77776653
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=1.1e-05 Score=61.44 Aligned_cols=250 Identities=10% Similarity=0.016 Sum_probs=160.2
Q ss_pred HHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038490 54 ITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133 (344)
Q Consensus 54 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 133 (344)
++-+.-.|++..++..-...... +.+...-.-+.++|...|.+.....- +.... .|.......+......-++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcch
Confidence 45666778898888877766543 23444445566777777776644332 22222 3333334333343333444
Q ss_pred hHHHH-HHHHHHhccCCCCcccH-HHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHH
Q 038490 134 LDRMK-ELFQIMEKYVSPDACSY-NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211 (344)
Q Consensus 134 ~~~a~-~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 211 (344)
.+.-. ++.+.+......+..++ ..-...|+..|++++|++...... ..+... .=...+.+..+++-|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~A--l~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAA--LNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 33333 33344433322233233 333467889999999999887722 223333 33345678889999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 212 DIMRVYNVKPDGQVFASLIKGLCA----VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
+|.+ -.+..|.+.|.+++.+ .+.+..|.-+|++|.+. .+|+..+.+-...++...|++++|..++++...+
T Consensus 162 ~mq~----ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 162 KMQQ----IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHc----cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9654 3456777777777754 45688999999999874 4678999999999999999999999999999888
Q ss_pred CCCCChhhHHHHHHHHhccCC-HHHHHHHHHHHhhC
Q 038490 288 GCKPNSVTYNALISGFCKEED-FEAAFTILDEMGDK 322 (344)
Q Consensus 288 ~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~ 322 (344)
... ++.+...++-.-...|. .+-..+.+.++...
T Consensus 237 d~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 237 DAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred cCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 655 56666555554445554 45556677777653
No 118
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=4e-06 Score=66.54 Aligned_cols=97 Identities=12% Similarity=0.027 Sum_probs=45.3
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHH
Q 038490 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF-ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI-YSSLISALFK 270 (344)
Q Consensus 193 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 270 (344)
+.++.+..|.+.+|+++|-++ ....+ .+..+| ..+.++|.+++.++.|++++-.+.. +.+..+ ...+..-|.+
T Consensus 399 ~AQAk~atgny~eaEelf~~i-s~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk 473 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRI-SGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYK 473 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhh-cChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHH
Confidence 344555556666666666442 11111 223333 3444556666666666555433321 112222 2233345555
Q ss_pred cCCcCcHHHHHHHHHHcCCCCChhhH
Q 038490 271 AGRKNEFPAILKEMKERGCKPNSVTY 296 (344)
Q Consensus 271 ~g~~~~a~~~~~~~~~~~~~p~~~~~ 296 (344)
.+.+--|-+.|+.+... .|++.-|
T Consensus 474 ~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 474 ANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHHHHHHhhhHHHcc--CCCcccc
Confidence 56555555555555544 3444444
No 119
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=1.8e-05 Score=71.17 Aligned_cols=175 Identities=11% Similarity=0.076 Sum_probs=101.3
Q ss_pred CChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHH
Q 038490 132 GKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211 (344)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 211 (344)
+.+++|.+.-++. ..+..|..+..+-.+.|.+.+|++-|-+. -|+..|..++....+.|.+++-.+.+.
T Consensus 1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred hhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 4445555444444 34566777777777777777777666433 166677778888888888888777775
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCC
Q 038490 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291 (344)
Q Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 291 (344)
-+.+ ..-.|. +=+.++-+|++.++..+.++++ ..||......+.+-|...|.++.|.-+|.
T Consensus 1158 MaRk-k~~E~~--id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------- 1218 (1666)
T KOG0985|consen 1158 MARK-KVREPY--IDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS--------- 1218 (1666)
T ss_pred HHHH-hhcCcc--chHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH---------
Confidence 5333 233343 3345677777777776655433 12455555555666666666655555444
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcC
Q 038490 292 NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342 (344)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 342 (344)
++.-|..|...+...|+++.|...-++.- +..||..+-.+|...+
T Consensus 1219 ~vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1219 NVSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKE 1263 (1666)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchh
Confidence 33345555555555566555554333321 4555555555555443
No 120
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.71 E-value=1.2e-06 Score=62.42 Aligned_cols=97 Identities=10% Similarity=0.109 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038490 84 IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCV 163 (344)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (344)
.....+...+...|++++|.+.++.+...+ +.+...+..+..++...|+++.|...++......+.+...+..+...+.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 334445555666666666666666666554 4455666666666666666666666666665555555555666666666
Q ss_pred hhCChhHHHHHHHHHhhC
Q 038490 164 VSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~ 181 (344)
..|++++|...|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666554
No 121
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.69 E-value=5.9e-05 Score=71.79 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=14.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhh
Q 038490 298 ALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 298 ~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
.+..++...|+.++|...+++...
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455556666666666666654
No 122
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=1.7e-05 Score=69.92 Aligned_cols=169 Identities=15% Similarity=0.124 Sum_probs=94.3
Q ss_pred hhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhH
Q 038490 6 IRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEII 85 (344)
Q Consensus 6 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 85 (344)
.+.+.+..+.|..++|+.+|++.++ |..|=..|...|.+++|.++-+.-.+. . -..|
T Consensus 804 akvAvLAieLgMlEeA~~lYr~ckR-------------------~DLlNKlyQs~g~w~eA~eiAE~~DRi---H-Lr~T 860 (1416)
T KOG3617|consen 804 AKVAVLAIELGMLEEALILYRQCKR-------------------YDLLNKLYQSQGMWSEAFEIAETKDRI---H-LRNT 860 (1416)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHH-------------------HHHHHHHHHhcccHHHHHHHHhhccce---e-hhhh
Confidence 3455566677888888888877732 444556777888888888877653322 1 2345
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHH----------hcC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 038490 86 FCNVIGFYGRARLLERALQMFDEMS----------SFN---------VQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK 146 (344)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 146 (344)
|..-..-+...++.+.|++.|++.. ... -..+...|.-..+-+-..|+.+.|+.++...++
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 6666666666778888888777642 111 012333444444545567888888888876654
Q ss_pred cCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHH
Q 038490 147 YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 211 (344)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 211 (344)
|..+++..+-.|+.++|-++-++-. |....-.+.+.|...|++.+|..+|.
T Consensus 941 --------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred --------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3333333344444444444433211 22333334444444444444444443
No 123
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=8.7e-05 Score=63.05 Aligned_cols=199 Identities=13% Similarity=0.133 Sum_probs=127.6
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038490 49 HYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128 (344)
Q Consensus 49 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 128 (344)
...+=+..+...|++++|.+...++... .+.+...+..-+-+..+.+.+++|+.+.+.-... ..+...+-.-..+.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHH
Confidence 3444556778889999999999999874 4555677777777888999999998655543211 11111112334455
Q ss_pred HhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCc-----------------------
Q 038490 129 LTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP----------------------- 185 (344)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------------- 185 (344)
.+.+..++|...++-+.+ .+..+...-...+.+.|++++|..+|+.+.+.+.+-
T Consensus 90 Yrlnk~Dealk~~~~~~~---~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDR---LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred HHcccHHHHHHHHhcccc---cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 678889999888883332 344455666677888999999999998886543210
Q ss_pred ----CHhhHHHHH---HHHHhhchHHHHHHHHHHHHHhc-------CCC-----CCH-HHHHHHHHHHHhcCChHHHHHH
Q 038490 186 ----TLVTFGTLI---YGLCLELRVDEALKLKEDIMRVY-------NVK-----PDG-QVFASLIKGLCAVGELSLALGV 245 (344)
Q Consensus 186 ----~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~-------~~~-----~~~-~~~~~l~~~~~~~~~~~~a~~~ 245 (344)
...+|..+. ..+...|++.+|+++++..++-. ... ... .+--.+...+-..|+.++|..+
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 112343333 23456789999999998873211 000 011 1122344556678999999998
Q ss_pred HHHHHHCCC
Q 038490 246 KEEMVRDKI 254 (344)
Q Consensus 246 ~~~~~~~~~ 254 (344)
+....+.++
T Consensus 247 y~~~i~~~~ 255 (652)
T KOG2376|consen 247 YVDIIKRNP 255 (652)
T ss_pred HHHHHHhcC
Confidence 888877654
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=5.9e-05 Score=57.27 Aligned_cols=188 Identities=11% Similarity=0.009 Sum_probs=84.4
Q ss_pred CCchHHHHHHHHhhhcC--C-CCCchh-HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 038490 61 KMFDEMQQILHQLKHDT--R-IVPKEI-IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR 136 (344)
Q Consensus 61 ~~~~~a~~~~~~~~~~~--~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 136 (344)
.+.++..+++..+.... | ..++.. .|..++-+....|+.+.|...++.+.+.- +-+..+-..-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 34555555555544321 1 223322 23334444445555555555555554432 2222222222222334455555
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 038490 137 MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216 (344)
Q Consensus 137 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 216 (344)
|.++++.+.+.+|.|..++---+...-..|+.-+|++-+.+..+. ...|...|.-+...|...|++++|.-.+++++-.
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 555555555554444444544444444445544555555554444 3335555555555555555555555555554432
Q ss_pred cCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHC
Q 038490 217 YNVKPDGQVFASLIKGLCA---VGELSLALGVKEEMVRD 252 (344)
Q Consensus 217 ~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 252 (344)
. |.+...+..+...+.- ..+.+.+.+.|.+..+.
T Consensus 184 ~--P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 Q--PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred C--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 1 2223333333333322 22344455555555543
No 125
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.66 E-value=0.00017 Score=64.37 Aligned_cols=229 Identities=12% Similarity=0.025 Sum_probs=159.1
Q ss_pred hcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHH
Q 038490 12 PRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIG 91 (344)
Q Consensus 12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 91 (344)
....+++.+|++...++.++.+ ....+-..-.-.+.+.|+.++|..+++...... ..|..|+..+-.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~P-----------n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~ 85 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHP-----------NALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQN 85 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCC-----------CcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHH
Confidence 3456788999999888744432 122222222234578899999999988876643 237888999999
Q ss_pred HHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCC----
Q 038490 92 FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRR---- 167 (344)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 167 (344)
+|.+.+..++|..+|+..... .|+......+..+|.+.+++.+-.++--++-+..+.+...+-.+++.+.+.-.
T Consensus 86 ~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 86 VYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENE 163 (932)
T ss_pred HHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcc
Confidence 999999999999999999876 46688888888999999888776666555555555666777777776655422
Q ss_pred ------hhHHHHHHHHHhhCC-CCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 038490 168 ------LEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240 (344)
Q Consensus 168 ------~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 240 (344)
..-|.+.++.+.+.+ ..-+..-...-...+...|.+++|..++..-....-..-+...-+.-+..+...+++.
T Consensus 164 ~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 164 LLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred cccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 234666777776654 1112222222233456788999999999543333333445555567778888999999
Q ss_pred HHHHHHHHHHHCCCC
Q 038490 241 LALGVKEEMVRDKIE 255 (344)
Q Consensus 241 ~a~~~~~~~~~~~~~ 255 (344)
+..++-.++...+.+
T Consensus 244 ~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 244 ELFELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHHHHHhCCc
Confidence 999999999988754
No 126
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=7.8e-05 Score=56.62 Aligned_cols=189 Identities=12% Similarity=0.076 Sum_probs=136.2
Q ss_pred ccHHHHHHHHHHHHh---cC-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHH
Q 038490 97 RLLERALQMFDEMSS---FN-VQMTVK-FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDA 171 (344)
Q Consensus 97 ~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 171 (344)
.+.++..+++..+.. .| ..++.. .|..++-+....|+.+.|...++.+....+.+...-..-...+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 344555566655542 22 345543 4566677777889999999999998887754444444334445567899999
Q ss_pred HHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038490 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251 (344)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 251 (344)
+++++.+.+.+ +.|..++..-+-..-..|+.-+|++.+...++. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 99999998885 446666665555666678888888888887774 488899999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcC---CcCcHHHHHHHHHHcCC
Q 038490 252 DKIEMDAGIYSSLISALFKAG---RKNEFPAILKEMKERGC 289 (344)
Q Consensus 252 ~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~ 289 (344)
..+. ++..+..+...+.-.| +.+-+.+.|.+..+...
T Consensus 183 ~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 183 IQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred cCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 7533 6666666776665544 45567888888887643
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.63 E-value=2.9e-06 Score=60.39 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHH
Q 038490 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196 (344)
Q Consensus 117 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 196 (344)
+......+...+...|++++|...++.+....+.+...+..+...+.+.|++++|..++++..+.+ +.+...+..+...
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 334455555556666666666666666655555555566666666666666666666666655543 2234444445555
Q ss_pred HHhhchHHHHHHHHHHHHHh
Q 038490 197 LCLELRVDEALKLKEDIMRV 216 (344)
Q Consensus 197 ~~~~~~~~~a~~~~~~~~~~ 216 (344)
+...|++++|...++..++.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 56666666666666655543
No 128
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.62 E-value=0.00022 Score=60.19 Aligned_cols=117 Identities=11% Similarity=0.032 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038490 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEM-DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303 (344)
Q Consensus 225 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 303 (344)
+|..++..-.+..-++.|..+|.+..+.+..+ ++.+.++++..++. ++.+-|.++|+--.+. ..-++.--...+.-+
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFL 445 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHH
Confidence 46666777777888899999999999887776 77788888886664 5778899999876554 122333445667777
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCCh--hhHHHHHHHHhhcCC
Q 038490 304 CKEEDFEAAFTILDEMGDKGCKANP--ISYNVILGGLCKDGK 343 (344)
Q Consensus 304 ~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~g~ 343 (344)
...++-..+..+|++....++.|+. ..|..+|.-=+.-|+
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 8888888899999999887666543 678888775555554
No 129
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.60 E-value=2.3e-06 Score=74.25 Aligned_cols=169 Identities=17% Similarity=0.123 Sum_probs=106.1
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCCh
Q 038490 89 VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168 (344)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (344)
.+.+......|.+|+.+++.+.... .....|..+.+-|+..|+++.|+++|.+. ..++-.|.+|.+.|+|
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~--------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA--------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc--------chhHHHHHHHhccccH
Confidence 4555667778888888888877653 23345677778888888888888888544 3466778888888888
Q ss_pred hHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 038490 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248 (344)
Q Consensus 169 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 248 (344)
+.|.++-++.. |.......|-.-..-+-+.|++.+|.++|-.+ | .|+ ..|+.|-+.|..+..+++.++
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti----~-~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI----G-EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc----c-Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 88888876654 33444555555555566777777777776442 1 333 234566666666666665544
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHH
Q 038490 249 MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282 (344)
Q Consensus 249 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 282 (344)
-... .-..|...+..-+-..|+...|..-|-
T Consensus 876 ~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 876 HHGD---HLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred hChh---hhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 3221 122334444555555555555555443
No 130
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=9.1e-06 Score=71.51 Aligned_cols=231 Identities=13% Similarity=0.058 Sum_probs=154.6
Q ss_pred hhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCC--------CCc
Q 038490 11 LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRI--------VPK 82 (344)
Q Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~ 82 (344)
.|.-.|+.+.|.+..+.+. +...|..+.+.|.+..+++-|.-.+-.|....|. .|+
T Consensus 737 fyvtiG~MD~AfksI~~Ik----------------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK----------------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh----------------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 4566788999988888774 5678999999999999999888777666543221 222
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 038490 83 EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGC 162 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (344)
.+-..........|..++|+.+|++-.+ |..|=..|-..|.|++|.++-+.-.+. .-..||......+
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYL 868 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHH
Confidence 2233344445688999999999998776 344556677889999999887654332 2334666677777
Q ss_pred HhhCChhHHHHHHHHHhh----------CC---------CCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCH
Q 038490 163 VVSRRLEDAWKVFDEMVK----------RR---------LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG 223 (344)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~----------~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 223 (344)
-..++.+.|++.|++... .. -..|...|.-...-+...|+.+.|+.+|....
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------- 939 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------- 939 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------
Confidence 778888888888876421 10 01133334444444445677777777776532
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHH
Q 038490 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285 (344)
Q Consensus 224 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 285 (344)
-|-.+++..+-.|+.++|-++-++-. |....-.|.+.|-..|++.+|..+|.+..
T Consensus 940 -D~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 940 -DYFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred -hhhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 24455666666777777776655432 55566678888888888888888887654
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=3e-05 Score=64.34 Aligned_cols=186 Identities=10% Similarity=-0.006 Sum_probs=136.4
Q ss_pred CCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHH
Q 038490 42 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121 (344)
Q Consensus 42 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 121 (344)
...|+...+...+.+......-..+..++-...+. .-...-|...+ .+...|+.++|+..++.+++.- |-|+..+
T Consensus 269 ~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~ 343 (484)
T COG4783 269 LDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQ-PDNPYYL 343 (484)
T ss_pred CCCccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHH-HHHHhcccchHHHHHHHHHHhC-CCCHHHH
Confidence 34567777777777766665555555544443331 11222343333 4457899999999999988764 5667777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhc
Q 038490 122 NTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201 (344)
Q Consensus 122 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 201 (344)
......+.+.++.++|.+.++++....+.....+-.+..++.+.|++.+|..+++..... .+.|+..|..|..+|...|
T Consensus 344 ~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 344 ELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELG 422 (484)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhC
Confidence 777889999999999999999998877766777788889999999999999999998776 4558889999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038490 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252 (344)
Q Consensus 202 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (344)
+..++..-..+ .+...|+++.|...+....+.
T Consensus 423 ~~~~a~~A~AE-------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 423 NRAEALLARAE-------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred chHHHHHHHHH-------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 88887665544 345667777777777776654
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=7.6e-05 Score=62.04 Aligned_cols=184 Identities=12% Similarity=0.038 Sum_probs=127.2
Q ss_pred CchHHHHHHHHhhhcCCC-CCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 038490 62 MFDEMQQILHQLKHDTRI-VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140 (344)
Q Consensus 62 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 140 (344)
+...+....+.+....+. .|+...+...+........-..+..++.+..+ +......--....+...|+.+.|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHH
Confidence 455566666666544222 34555555555554443333333333333333 12222333344445677889999999
Q ss_pred HHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcC-HhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCC
Q 038490 141 FQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT-LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219 (344)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 219 (344)
++.+....|.|...+......+.+.++..+|.+.++++... .|+ ....-.+..++.+.|++.+|+.+++..... .
T Consensus 329 l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--~ 404 (484)
T COG4783 329 LQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--D 404 (484)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--C
Confidence 99988877777777788888999999999999999998877 344 444556677888999999999999887653 4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038490 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252 (344)
Q Consensus 220 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (344)
+.|+..|..|.++|...|+..++..-..+....
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 677889999999999999999888888777664
No 133
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.56 E-value=1.8e-05 Score=68.95 Aligned_cols=170 Identities=15% Similarity=0.115 Sum_probs=110.9
Q ss_pred HHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHH
Q 038490 125 LNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204 (344)
Q Consensus 125 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (344)
+.+.....+|.+|..+++.+.+.. ....-|..+...|...|+++.|+++|-+.- .++-.|..|.+.|+|+
T Consensus 739 ieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 334455667888888887776543 233457777888888888888888886531 2455667788888888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHH
Q 038490 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284 (344)
Q Consensus 205 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 284 (344)
+|.++-.+.+ |.......|.+-..-.-+.|++.+|.+++-.+. .|+ ..|.+|-+.|..+..+++.++-
T Consensus 809 da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 809 DAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 8888776643 444555666666666777888888887764443 233 3467788888888888877764
Q ss_pred HHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038490 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319 (344)
Q Consensus 285 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 319 (344)
.... -..|...+..-+-..|+...|..-|-+.
T Consensus 877 h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 877 HGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred Chhh---hhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 3321 1234455555566666666666555443
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.54 E-value=3.3e-06 Score=70.19 Aligned_cols=123 Identities=11% Similarity=0.060 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038490 85 IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVV 164 (344)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (344)
....|++.+...++++.|..+|+++.+.. |+ ....+++.+...++-.+|.+++++.....+.+..........+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 33445555555556666666666665543 33 223355555555555566666655555444444444444555556
Q ss_pred hCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHH
Q 038490 165 SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212 (344)
Q Consensus 165 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 212 (344)
.++++.|+.+.+++.... +-+-.+|..|..+|.+.|+++.|+..++.
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 666666666666655541 22333566666666666666666655554
No 135
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.54 E-value=0.00034 Score=62.48 Aligned_cols=228 Identities=14% Similarity=0.077 Sum_probs=125.5
Q ss_pred HHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 038490 56 KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135 (344)
Q Consensus 56 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 135 (344)
-....+++.+|.+...++.++.+-.+-..++.++. ..+.|+.++|..+++.....+ ..|..+...+-.+|...++.+
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhh
Confidence 34556777788877777777542222222232222 346777788877777766655 336777777777777888888
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhc----------hHHH
Q 038490 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL----------RVDE 205 (344)
Q Consensus 136 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~ 205 (344)
+|..++++..+..| +..-...+..+|.+.+++.+-.+.--++-+. .+-....|-.+++.....- -..-
T Consensus 95 ~~~~~Ye~~~~~~P-~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 95 EAVHLYERANQKYP-SEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHHhhCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 88888877776543 3555556666677766665433333333332 2334445555555444321 1223
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHH
Q 038490 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE-EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284 (344)
Q Consensus 206 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 284 (344)
|.+.++.+++..|...+..-.......+...|.+++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 444455555444311122112222233345666777777663 3333322334444455566666677777777777776
Q ss_pred HHcC
Q 038490 285 KERG 288 (344)
Q Consensus 285 ~~~~ 288 (344)
...|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 6664
No 136
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.50 E-value=1.6e-05 Score=71.37 Aligned_cols=163 Identities=10% Similarity=0.001 Sum_probs=104.0
Q ss_pred hhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchh
Q 038490 5 SIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI 84 (344)
Q Consensus 5 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 84 (344)
+..++..|+...+...|.+-|+....- ..-+..++....+.|++..+++.|..+.-..-+......-..
T Consensus 495 f~~LG~iYrd~~Dm~RA~kCf~KAFeL-----------Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~ 563 (1238)
T KOG1127|consen 495 FAFLGQIYRDSDDMKRAKKCFDKAFEL-----------DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKE 563 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-----------CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHh
Confidence 455677777777777788888776332 223777788888888888888888887433332210001112
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038490 85 IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVV 164 (344)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (344)
.|....-.|...++...|..-|+...+.. |.|...|..+..+|.++|.+..|.++|.+.....|.+...-.-..-.-+.
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 22334445667777888888888877766 66777888888888888888888888877766544333322223334455
Q ss_pred hCChhHHHHHHHHHh
Q 038490 165 SRRLEDAWKVFDEMV 179 (344)
Q Consensus 165 ~~~~~~a~~~~~~~~ 179 (344)
.|.+.+|...+....
T Consensus 643 ~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 643 NGKYKEALDALGLII 657 (1238)
T ss_pred hhhHHHHHHHHHHHH
Confidence 666777666666554
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.48 E-value=7.9e-06 Score=68.01 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=79.3
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038490 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235 (344)
Q Consensus 156 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (344)
..++..+...++++.|..+|+++.+.. |+. ...+++.+...++-.+|++++++.++.. +.+...+......+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHh
Confidence 344555556667777777777777663 332 3345566666666677777777766542 4455566666666777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHH
Q 038490 236 VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284 (344)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 284 (344)
.++++.|+.+.+++.+..+. +-.+|..|..+|...|+++.|+..+..+
T Consensus 247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 77777777777777776433 5557777777777777777777766654
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.47 E-value=3.2e-07 Score=47.92 Aligned_cols=33 Identities=39% Similarity=0.776 Sum_probs=24.2
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC
Q 038490 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327 (344)
Q Consensus 295 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 327 (344)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.44 E-value=4.4e-07 Score=47.04 Aligned_cols=33 Identities=42% Similarity=0.654 Sum_probs=23.5
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC
Q 038490 294 VTYNALISGFCKEEDFEAAFTILDEMGDKGCKA 326 (344)
Q Consensus 294 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 326 (344)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 140
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.00065 Score=61.78 Aligned_cols=161 Identities=16% Similarity=0.145 Sum_probs=109.0
Q ss_pred cCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHH
Q 038490 131 CGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 210 (344)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 210 (344)
.+-+++|..+|++.. .+..+.+.|+.- -+..++|.+.-++.. .+..|+.+..+-.+.|...+|++-|
T Consensus 1061 ~~LyEEAF~ifkkf~----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFD----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred hhHHHHHHHHHHHhc----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHH
Confidence 344455555555443 233333333332 244455544444331 4556888888888888888888777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCC
Q 038490 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK 290 (344)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 290 (344)
-+ ..|+..|.-+++...+.|.+++..+.+....+..-.|... +.|+-+|++.++..+.++++. -
T Consensus 1128 ik-------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------g 1191 (1666)
T KOG0985|consen 1128 IK-------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------G 1191 (1666)
T ss_pred Hh-------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------C
Confidence 44 3466788888999999999999998888777765555544 478888999888877665543 4
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHh
Q 038490 291 PNSVTYNALISGFCKEEDFEAAFTILDEMG 320 (344)
Q Consensus 291 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 320 (344)
||......+.+-|...|.++.|.-+|....
T Consensus 1192 pN~A~i~~vGdrcf~~~~y~aAkl~y~~vS 1221 (1666)
T KOG0985|consen 1192 PNVANIQQVGDRCFEEKMYEAAKLLYSNVS 1221 (1666)
T ss_pred CCchhHHHHhHHHhhhhhhHHHHHHHHHhh
Confidence 788888888888888999988888776543
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.39 E-value=7e-07 Score=46.60 Aligned_cols=33 Identities=39% Similarity=0.769 Sum_probs=27.0
Q ss_pred cHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcC
Q 038490 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186 (344)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 186 (344)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888776
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.38 E-value=2.5e-05 Score=56.24 Aligned_cols=127 Identities=15% Similarity=0.167 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 038490 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKP-DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA--GIYSSLIS 266 (344)
Q Consensus 190 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~ 266 (344)
|..++..+ ..++...+...++.+....+-.+ .....-.+...+...|++++|...|+.+......++. .....|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 44444333 36666666666666655431111 1222333445666677777777777777766533221 23334566
Q ss_pred HHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038490 267 ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319 (344)
Q Consensus 267 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 319 (344)
.+...|++++|+..++...... .....+......+.+.|++++|...|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6677777777777776543322 23344555566777777777777777653
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.38 E-value=3.1e-05 Score=55.73 Aligned_cols=125 Identities=12% Similarity=0.045 Sum_probs=71.2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCc---hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCH--HHHHH
Q 038490 49 HYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK---EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV--KFFNT 123 (344)
Q Consensus 49 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 123 (344)
.|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+........++. .....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 344444444 3666777777777776642 222 122333456666777777777777777765422221 23344
Q ss_pred HHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHH
Q 038490 124 LLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177 (344)
Q Consensus 124 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 177 (344)
|..++...|++++|+..++.... .......+.....+|.+.|++++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55666667777777777655322 113334455566667777777777776665
No 144
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.34 E-value=6.6e-06 Score=68.80 Aligned_cols=126 Identities=13% Similarity=0.069 Sum_probs=78.8
Q ss_pred CCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 038490 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN-VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAG 259 (344)
Q Consensus 181 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 259 (344)
.+.+.+......++..+....+.+.+..++.+...... ...-..|..++++.|.+.|..+.+..+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 34455666666666666666677777776666433211 11122344577777777777777777777777777777777
Q ss_pred HHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 038490 260 IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306 (344)
Q Consensus 260 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 306 (344)
+++.||..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777777766665555555555555554443
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.34 E-value=1e-06 Score=45.59 Aligned_cols=33 Identities=30% Similarity=0.649 Sum_probs=24.7
Q ss_pred ccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCc
Q 038490 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP 185 (344)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 185 (344)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777765
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.32 E-value=1.8e-05 Score=52.05 Aligned_cols=91 Identities=13% Similarity=0.097 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038490 51 DLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130 (344)
Q Consensus 51 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 130 (344)
..+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 334444444455555555554444321 2222333444444444444444444444444433 2222334444444444
Q ss_pred cCChHHHHHHHHHH
Q 038490 131 CGKLDRMKELFQIM 144 (344)
Q Consensus 131 ~~~~~~a~~~~~~~ 144 (344)
.|+++.|...+...
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 44444444444443
No 147
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.30 E-value=0.0016 Score=55.20 Aligned_cols=131 Identities=9% Similarity=0.039 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038490 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP-DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266 (344)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 266 (344)
.+|...|....+..-...|..+|.++.+. +..+ ++.+.++++..+| .++.+-|.++|+--.+.- .-++.--...+.
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHH
Confidence 35666777777888889999999996554 4455 7888889998775 578899999999877653 224455567888
Q ss_pred HHHHcCCcCcHHHHHHHHHHcCCCCC--hhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 038490 267 ALFKAGRKNEFPAILKEMKERGCKPN--SVTYNALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 267 ~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
.+...++-..+..+|++....++.|+ ...|..++.--..-|+...+.++-+++..
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 89999999999999999998866554 47899999999999999999998887764
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.28 E-value=3.9e-05 Score=64.33 Aligned_cols=120 Identities=10% Similarity=0.107 Sum_probs=72.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC---CCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHH
Q 038490 115 QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS---PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191 (344)
Q Consensus 115 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 191 (344)
+.+......+++.+....+.+.+..++.+.+.... .-..|..++++.|.+.|..+.++.++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 44445555566666666666666666666655422 224455567777777777777777777666667777777777
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038490 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235 (344)
Q Consensus 192 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (344)
.+|+.+.+.|++..|.++...|+.+. ...+..++...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe-~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQE-EFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHH
Confidence 77777777777777777766665542 23344444444444433
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.28 E-value=2.6e-05 Score=51.29 Aligned_cols=96 Identities=14% Similarity=0.184 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038490 85 IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVV 164 (344)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (344)
++..+...+...|++++|...++...+.. +.+...+..+..++...++++.|...++......+.+..++..+...+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 35567778888999999999999998875 45557788889999999999999999999988777666788899999999
Q ss_pred hCChhHHHHHHHHHhhC
Q 038490 165 SRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 165 ~~~~~~a~~~~~~~~~~ 181 (344)
.|+++.|...+....+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 99999999999988754
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.26 E-value=2.6e-05 Score=51.35 Aligned_cols=76 Identities=25% Similarity=0.454 Sum_probs=45.6
Q ss_pred HHHHHHcCCcCcHHHHHHHHHHcCC-CCChhhHHHHHHHHhccC--------CHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 038490 265 ISALFKAGRKNEFPAILKEMKERGC-KPNSVTYNALISGFCKEE--------DFEAAFTILDEMGDKGCKANPISYNVIL 335 (344)
Q Consensus 265 ~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~p~~~~~~~ll 335 (344)
|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+|+.|...+++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444556666666666666665 556666666655544322 2334566777777777777777777777
Q ss_pred HHHhh
Q 038490 336 GGLCK 340 (344)
Q Consensus 336 ~~~~~ 340 (344)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 76654
No 151
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.21 E-value=0.00013 Score=58.72 Aligned_cols=129 Identities=11% Similarity=0.079 Sum_probs=55.0
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHh-cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038490 49 HYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR-ARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127 (344)
Q Consensus 49 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (344)
+|-.++....+.+..+.|..+|.+..+.. ..+..+|......-.. .++.+.|.++|+...+.- +.+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 34445555555555555555555554321 1122222222222112 333444555555554432 3444445555555
Q ss_pred HHhcCChHHHHHHHHHHhccCCC---CcccHHHHHHHHHhhCChhHHHHHHHHHhh
Q 038490 128 KLTCGKLDRMKELFQIMEKYVSP---DACSYNILIHGCVVSRRLEDAWKVFDEMVK 180 (344)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (344)
+...++.+.|..+|++.....+. ....|...+..=.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555443221 123444444444445555555554444443
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.20 E-value=8.7e-05 Score=51.30 Aligned_cols=102 Identities=11% Similarity=-0.053 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhcCCC-CCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC--CCHHHHHHHHH
Q 038490 50 YDLIITKLGRAKMFDEMQQILHQLKHDTRI-VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ--MTVKFFNTLLN 126 (344)
Q Consensus 50 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 126 (344)
+...+..+.+.|++++|.+.|..+.....- +.....+..+..++.+.|+++.|.+.|+.+...... ....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 444555566666666666666666543210 001234444555666666666666666665543211 11334555555
Q ss_pred HHHhcCChHHHHHHHHHHhccCCCC
Q 038490 127 PKLTCGKLDRMKELFQIMEKYVSPD 151 (344)
Q Consensus 127 ~~~~~~~~~~a~~~~~~~~~~~~~~ 151 (344)
++...|+.+.|...++.+....+.+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCC
Confidence 5555666666666666555544433
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.18 E-value=0.00012 Score=50.61 Aligned_cols=95 Identities=15% Similarity=0.036 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHhccCCC---CcccHHHHH
Q 038490 86 FCNVIGFYGRARLLERALQMFDEMSSFNVQMT---VKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP---DACSYNILI 159 (344)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~ 159 (344)
+..+...+.+.|++++|.+.|+.+.+.. +.+ ...+..+..++.+.|+++.|...++.+....+. ....+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555555666666666666655432 111 234444555555556666666666555543321 123444555
Q ss_pred HHHHhhCChhHHHHHHHHHhhC
Q 038490 160 HGCVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~ 181 (344)
.++.+.|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555555555555555555554
No 154
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.16 E-value=0.00047 Score=62.45 Aligned_cols=180 Identities=12% Similarity=0.006 Sum_probs=123.7
Q ss_pred chHHHHHHHHhhhcCCCCCc-hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 038490 63 FDEMQQILHQLKHDTRIVPK-EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141 (344)
Q Consensus 63 ~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 141 (344)
...|...|-+..+. .|+ ...|..|...|....+...|.+.|+..-+.+ +.+..........|++..+++.|..+.
T Consensus 474 ~~~al~ali~alrl---d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 474 SALALHALIRALRL---DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 45555555444432 233 4567888888888888889999999888776 667778888889999999999998885
Q ss_pred HHHhccCCC--CcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCC
Q 038490 142 QIMEKYVSP--DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV 219 (344)
Q Consensus 142 ~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 219 (344)
-...+..+. -...|....-.|.+.++...|...|+......+. |...|..+..+|..+|++..|.++|.++...
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--- 625 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--- 625 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc---
Confidence 444443331 1222333444567778888888888887776433 7778888889999999999999999876432
Q ss_pred CCCHHHHHH--HHHHHHhcCChHHHHHHHHHHHH
Q 038490 220 KPDGQVFAS--LIKGLCAVGELSLALGVKEEMVR 251 (344)
Q Consensus 220 ~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~ 251 (344)
.|+. +|.. ..-..+..|.+.+|...+..+..
T Consensus 626 rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4432 2222 22234567888888888877654
No 155
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.16 E-value=7.6e-05 Score=53.00 Aligned_cols=97 Identities=6% Similarity=-0.021 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038490 84 IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCV 163 (344)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (344)
...-.+...+...|++++|.++|+.+...+ +-+..-|..|.-++-..|++++|...|.......+.++..+..+..++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 334445555667788888888888777765 5566667777777777788888888888777777777777777777888
Q ss_pred hhCChhHHHHHHHHHhhC
Q 038490 164 VSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~ 181 (344)
..|+.+.|.+.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888777776554
No 156
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.15 E-value=5.7e-05 Score=60.78 Aligned_cols=131 Identities=11% Similarity=0.120 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 038490 84 IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT-CGKLDRMKELFQIMEKYVSPDACSYNILIHGC 162 (344)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (344)
.+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|......-.. .++.+.|..+|+...+..+.+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 467888888888888999999999988654 4455566665555333 56677799999998887778888888888888
Q ss_pred HhhCChhHHHHHHHHHhhCCCCcCH---hhHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 038490 163 VVSRRLEDAWKVFDEMVKRRLQPTL---VTFGTLIYGLCLELRVDEALKLKEDIMRV 216 (344)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 216 (344)
.+.|+.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999998876 33332 47778887778888888888888886654
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.15 E-value=8.3e-06 Score=52.48 Aligned_cols=82 Identities=12% Similarity=0.166 Sum_probs=41.3
Q ss_pred cCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 038490 60 AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139 (344)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 139 (344)
.|+++.|+.+++++.......++...+..+..++.+.|++++|..+++. .+.+ +.+....-.+..++.+.|++++|..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3556666666666665421111233344456666666666666666665 2222 1222333344566666666666666
Q ss_pred HHHH
Q 038490 140 LFQI 143 (344)
Q Consensus 140 ~~~~ 143 (344)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6553
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.15 E-value=0.00019 Score=53.30 Aligned_cols=92 Identities=8% Similarity=-0.028 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHH
Q 038490 83 EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT--VKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIH 160 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 160 (344)
...+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+++.....+.+...+..+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 34567777788888999999999998886542222 4577888888888999999999998888776666677777777
Q ss_pred HHHhhCChhHHHHH
Q 038490 161 GCVVSRRLEDAWKV 174 (344)
Q Consensus 161 ~~~~~~~~~~a~~~ 174 (344)
.+...|+...+..-
T Consensus 115 ~~~~~g~~~~a~~~ 128 (172)
T PRK02603 115 IYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHcCChHhHhhC
Confidence 77777775554433
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.14 E-value=0.0002 Score=53.28 Aligned_cols=87 Identities=15% Similarity=0.090 Sum_probs=49.0
Q ss_pred hHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038490 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD-GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA 267 (344)
Q Consensus 189 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 267 (344)
.+..+...+...|++++|...|++.++...-.++ ...+..+..++.+.|++++|...+++..+..+. +...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 3445555566667777777777666543211121 345566666666666777776666666665332 45555555556
Q ss_pred HHHcCCcCc
Q 038490 268 LFKAGRKNE 276 (344)
Q Consensus 268 ~~~~g~~~~ 276 (344)
+...|+...
T Consensus 116 ~~~~g~~~~ 124 (172)
T PRK02603 116 YHKRGEKAE 124 (172)
T ss_pred HHHcCChHh
Confidence 655555433
No 160
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.14 E-value=0.00031 Score=49.95 Aligned_cols=102 Identities=11% Similarity=0.045 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHH
Q 038490 119 KFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198 (344)
Q Consensus 119 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 198 (344)
...-.+...+...|++++|..+|+.+....+.+..-|-.|..++-..|++++|+..|......++ -|+..+-.+..++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 34445555667788899999999888888777888888888888888999999999988887754 36677777777888
Q ss_pred hhchHHHHHHHHHHHHHhcCCCC
Q 038490 199 LELRVDEALKLKEDIMRVYNVKP 221 (344)
Q Consensus 199 ~~~~~~~a~~~~~~~~~~~~~~~ 221 (344)
..|+.+.|.+-|+..+...+-.|
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhccCh
Confidence 88898888888888776654343
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.14 E-value=5.2e-06 Score=53.42 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=46.9
Q ss_pred cccHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHH
Q 038490 96 ARLLERALQMFDEMSSFNVQ-MTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKV 174 (344)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 174 (344)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. ....+.+......+..++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777777765421 1334444566777777777777777766 222223334444556667777777777776
Q ss_pred HHH
Q 038490 175 FDE 177 (344)
Q Consensus 175 ~~~ 177 (344)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.14 E-value=0.00011 Score=61.44 Aligned_cols=97 Identities=6% Similarity=-0.052 Sum_probs=61.2
Q ss_pred HHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038490 53 IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132 (344)
Q Consensus 53 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 132 (344)
-...+...|++++|++.|++..+.. +.+...|..+..++...|++++|+..++.+++.. +.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 3445556667777777777766542 3345556666666667777777777777766654 445556666666666777
Q ss_pred ChHHHHHHHHHHhccCCCCc
Q 038490 133 KLDRMKELFQIMEKYVSPDA 152 (344)
Q Consensus 133 ~~~~a~~~~~~~~~~~~~~~ 152 (344)
+++.|...|+......+.+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~ 104 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDS 104 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCH
Confidence 77777777766666554333
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.13 E-value=8.3e-05 Score=55.08 Aligned_cols=93 Identities=17% Similarity=0.024 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038490 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEM--DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302 (344)
Q Consensus 225 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 302 (344)
.+..+...+...|++++|...++........+ ...++..+...+...|++++|+..+++....... ...++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 34444444445555555555555554432221 1234555555555555555555555555443211 22333333333
Q ss_pred Hh-------ccCCHHHHHHHHHH
Q 038490 303 FC-------KEEDFEAAFTILDE 318 (344)
Q Consensus 303 ~~-------~~~~~~~a~~~~~~ 318 (344)
+. ..|+++.|...+++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHH
Confidence 33 56666655444443
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.12 E-value=4.6e-06 Score=42.03 Aligned_cols=30 Identities=53% Similarity=1.026 Sum_probs=21.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHhhCCC
Q 038490 295 TYNALISGFCKEEDFEAAFTILDEMGDKGC 324 (344)
Q Consensus 295 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 324 (344)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777776653
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.12 E-value=0.00011 Score=61.45 Aligned_cols=101 Identities=13% Similarity=0.110 Sum_probs=80.4
Q ss_pred HHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 038490 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273 (344)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 273 (344)
...+...|++++|+..|.++++.. +.+...|..+..++.+.|++++|+..++++...... +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 455677889999999999988753 456778888888899999999999999999887654 77788888899999999
Q ss_pred cCcHHHHHHHHHHcCCCCChhhHHHH
Q 038490 274 KNEFPAILKEMKERGCKPNSVTYNAL 299 (344)
Q Consensus 274 ~~~a~~~~~~~~~~~~~p~~~~~~~l 299 (344)
+++|+..|++..+.+ |+.......
T Consensus 86 ~~eA~~~~~~al~l~--P~~~~~~~~ 109 (356)
T PLN03088 86 YQTAKAALEKGASLA--PGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 999999999988864 444444333
No 166
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.09 E-value=9.3e-05 Score=48.81 Aligned_cols=78 Identities=15% Similarity=0.274 Sum_probs=56.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCC--------cCcHHHHHHHHHHcCCCCChhhHHH
Q 038490 228 SLIKGLCAVGELSLALGVKEEMVRDKI-EMDAGIYSSLISALFKAGR--------KNEFPAILKEMKERGCKPNSVTYNA 298 (344)
Q Consensus 228 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~--------~~~a~~~~~~~~~~~~~p~~~~~~~ 298 (344)
..|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+..+..- +-+.+.+++.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555777777788888888877 6788888887777766432 2345677888888888888888888
Q ss_pred HHHHHhc
Q 038490 299 LISGFCK 305 (344)
Q Consensus 299 l~~~~~~ 305 (344)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8877654
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.09 E-value=0.00017 Score=53.38 Aligned_cols=114 Identities=14% Similarity=0.013 Sum_probs=73.6
Q ss_pred chHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCChHHHHHH
Q 038490 63 FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQM--TVKFFNTLLNPKLTCGKLDRMKEL 140 (344)
Q Consensus 63 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 140 (344)
+..+...+..+.+..+..-....+..+...+...|++++|+..|+........+ ...++..+..++...|++++|...
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444445555553322222234566777777888889999999888887653222 234777888888888888888888
Q ss_pred HHHHhccCCCCcccHHHHHHHHH-------hhCChhHHHHHHH
Q 038490 141 FQIMEKYVSPDACSYNILIHGCV-------VSRRLEDAWKVFD 176 (344)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~ 176 (344)
++......+....++..+...+. ..|+++.|...++
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 88887766555566666666666 5555554444433
No 168
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.05 E-value=7.3e-06 Score=41.26 Aligned_cols=29 Identities=45% Similarity=0.686 Sum_probs=19.8
Q ss_pred cHHHHHHHHHhhCChhHHHHHHHHHhhCC
Q 038490 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRR 182 (344)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (344)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56667777777777777777777766654
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.04 E-value=0.0036 Score=49.23 Aligned_cols=56 Identities=7% Similarity=-0.005 Sum_probs=26.3
Q ss_pred HHHHHHHcCCcCcHHHHHHHHHHc--CCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038490 264 LISALFKAGRKNEFPAILKEMKER--GCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319 (344)
Q Consensus 264 l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 319 (344)
+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344455555555555555555543 11112223334445555555555555544433
No 170
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.00 E-value=0.00012 Score=54.59 Aligned_cols=88 Identities=18% Similarity=0.291 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----------------CcCcHH
Q 038490 220 KPDGQVFASLIKGLCAV-----GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG----------------RKNEFP 278 (344)
Q Consensus 220 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~a~ 278 (344)
..+..+|..+++.|.+. |..+=....++.|.+.|+.-|..+|+.|++.+=+.. +.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 56777888888887654 566666777788888888888888888888775421 123345
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhccC
Q 038490 279 AILKEMKERGCKPNSVTYNALISGFCKEE 307 (344)
Q Consensus 279 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 307 (344)
+++++|...|+-||..++..++..+.+.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 55555555555555555555555554444
No 171
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.99 E-value=0.0058 Score=49.88 Aligned_cols=287 Identities=14% Similarity=0.072 Sum_probs=177.3
Q ss_pred hhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHH--HHHhcCCchHHHHHHHHhhhcCCCCCchhH--
Q 038490 10 CLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIIT--KLGRAKMFDEMQQILHQLKHDTRIVPKEII-- 85 (344)
Q Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-- 85 (344)
-+..-.|+-..|.++-.+.... +.. |..-.-.++. +-.-.|+++.|.+-|+.|... |....
T Consensus 92 liAagAGda~lARkmt~~~~~l--------lss---DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllG 156 (531)
T COG3898 92 LIAAGAGDASLARKMTARASKL--------LSS---DQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLG 156 (531)
T ss_pred hhhhccCchHHHHHHHHHHHhh--------hhc---cchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHh
Confidence 3445567888888777664321 111 3333333443 334569999999999999863 33332
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC--CCcc--cHHHHHHH
Q 038490 86 FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PDAC--SYNILIHG 161 (344)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~~~l~~~ 161 (344)
+..|.-..-+.|+.+.|.++-+.....- +.-...+...+...+..|+|+.|+++++.-+.... ++.. .-..|+.+
T Consensus 157 LRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtA 235 (531)
T COG3898 157 LRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTA 235 (531)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Confidence 2334444457899999999888887654 34456788889999999999999999987655432 2211 11222222
Q ss_pred HH---hhCChhHHHHHHHHHhhCCCCcCHhhH-HHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038490 162 CV---VSRRLEDAWKVFDEMVKRRLQPTLVTF-GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237 (344)
Q Consensus 162 ~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 237 (344)
-. -..+...|...-.+..+. .||..-- .....++.+.|+..++-.+++.+.+. .|.+.+....+ +.+.|
T Consensus 236 kA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~g 308 (531)
T COG3898 236 KAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSG 308 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCC
Confidence 11 123455555555444433 4443322 23346778899999999999887765 56655544333 34666
Q ss_pred ChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHH-hccCCHHHHHHH
Q 038490 238 ELSLAL-GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF-CKEEDFEAAFTI 315 (344)
Q Consensus 238 ~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~~ 315 (344)
+..... +-.+.+...... +......+..+-...|++..|..--+..... .|....|..|.+.- +..||-.++..+
T Consensus 309 dta~dRlkRa~~L~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 309 DTALDRLKRAKKLESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred CcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHH
Confidence 543221 112222223222 5667777788888889988887777666554 57777787777754 455999999998
Q ss_pred HHHHhhC
Q 038490 316 LDEMGDK 322 (344)
Q Consensus 316 ~~~~~~~ 322 (344)
+-+..+.
T Consensus 386 lAqav~A 392 (531)
T COG3898 386 LAQAVKA 392 (531)
T ss_pred HHHHhcC
Confidence 8888764
No 172
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.98 E-value=0.00012 Score=57.05 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=74.0
Q ss_pred HHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcC
Q 038490 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275 (344)
Q Consensus 196 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 275 (344)
-..+.+++.+|+..|.++++.. +.|.+.|..-..+|.+.|.++.|++-.+..+..+.. ...+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 3456788888888888877642 456677777788888888888888888877776533 5677888888888888888
Q ss_pred cHHHHHHHHHHcCCCCChhhHHHHH
Q 038490 276 EFPAILKEMKERGCKPNSVTYNALI 300 (344)
Q Consensus 276 ~a~~~~~~~~~~~~~p~~~~~~~l~ 300 (344)
+|++.|++..+. .|+-.+|..=+
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHH
Confidence 888888887775 56655654433
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.97 E-value=0.0009 Score=58.59 Aligned_cols=64 Identities=14% Similarity=0.044 Sum_probs=34.9
Q ss_pred HhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 038490 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253 (344)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 253 (344)
...|..+.-.....|++++|...+++++.. .|+...|..+...+...|+.++|.+.+++....+
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344444433344456666666666665543 2455555566666666666666666666655543
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.96 E-value=0.0011 Score=53.67 Aligned_cols=132 Identities=13% Similarity=0.148 Sum_probs=77.3
Q ss_pred HHHHHHHHHhh-chHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCHH
Q 038490 190 FGTLIYGLCLE-LRVDEALKLKEDIMRVYNVKPD----GQVFASLIKGLCAVGELSLALGVKEEMVRDKIE-----MDAG 259 (344)
Q Consensus 190 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~ 259 (344)
+..+...|... |++++|++.|++.......... ..++..+...+.+.|++++|.++|+++...... .+..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 33444556666 7888888888876654322222 345667777888899999999999988764322 1221
Q ss_pred -HHHHHHHHHHHcCCcCcHHHHHHHHHHcC--CCCC--hhhHHHHHHHHhc--cCCHHHHHHHHHHHhh
Q 038490 260 -IYSSLISALFKAGRKNEFPAILKEMKERG--CKPN--SVTYNALISGFCK--EEDFEAAFTILDEMGD 321 (344)
Q Consensus 260 -~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~--~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~ 321 (344)
.+...+-++...||...|...+++..... +..+ ......|+.++-. ...+..++.-|+.+.+
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 23334446677788888988888887552 2211 2344556666643 2346666666666554
No 175
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.95 E-value=0.0034 Score=45.73 Aligned_cols=126 Identities=16% Similarity=0.062 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC-CCcccHHHHHHHHHhhCChhHHHHHHHHHhhCC---CCcCHhhH
Q 038490 115 QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR---LQPTLVTF 190 (344)
Q Consensus 115 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 190 (344)
.|++..-..|..+..+.|+..+|...|++...... .|....-.+.++....+++..|...++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 45555556666666667777777776666655433 455555566666666666767766666665542 1222 23
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 038490 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245 (344)
Q Consensus 191 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 245 (344)
..+.+.+...|+..+|..-|+..... -|+...-......+.+.|+..++..-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 34455666666666666666665543 34443333333444556655544433
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.91 E-value=0.0015 Score=57.29 Aligned_cols=134 Identities=10% Similarity=0.050 Sum_probs=71.5
Q ss_pred CCcccHHHHHHHHHhhC-----ChhHHHHHHHHHhhCCCCcC-HhhHHHHHHHHHhh--------chHHHHHHHHHHHHH
Q 038490 150 PDACSYNILIHGCVVSR-----RLEDAWKVFDEMVKRRLQPT-LVTFGTLIYGLCLE--------LRVDEALKLKEDIMR 215 (344)
Q Consensus 150 ~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~ 215 (344)
.+...|...+++..... +...|..+|++..+. .|+ ...+..+..++... .+...+.+...+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 55566776666644322 255777777777765 233 23333322222111 122233333333222
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 216 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
....+.+...|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 11123344555555555555667777777777776664 45666666677777777777777777666654
No 177
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.0028 Score=52.01 Aligned_cols=276 Identities=13% Similarity=0.018 Sum_probs=168.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038490 50 YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL 129 (344)
Q Consensus 50 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (344)
.......+.+..++..|+..+....+. .+.+..-|..-+..+...+++++|.--.+.-.+.. +-........-+++.
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~--~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDM--CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHL 128 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHh--CccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhh
Confidence 344455666777888888888888875 24445556666666677788887777666555432 222223344444444
Q ss_pred hcCChHHHHHHHHH------------HhccCC-----CCcccHHHH-HHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHH
Q 038490 130 TCGKLDRMKELFQI------------MEKYVS-----PDACSYNIL-IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG 191 (344)
Q Consensus 130 ~~~~~~~a~~~~~~------------~~~~~~-----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 191 (344)
..++..+|.+.++. .....+ |.-.+|..+ ..++.-.|++++|.++--..++..- ...+.
T Consensus 129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~a 205 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEA 205 (486)
T ss_pred hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHH
Confidence 44554444443331 111111 112223222 3456778999999888777766531 12222
Q ss_pred HHH--HHHHhhchHHHHHHHHHHHHHhcCCCCCHHH---HHHH----------HHHHHhcCChHHHHHHHHHHHHC---C
Q 038490 192 TLI--YGLCLELRVDEALKLKEDIMRVYNVKPDGQV---FASL----------IKGLCAVGELSLALGVKEEMVRD---K 253 (344)
Q Consensus 192 ~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l----------~~~~~~~~~~~~a~~~~~~~~~~---~ 253 (344)
..+ .++.-.++.+.+...|++.++. .|+... -... ..-..+.|++..|.+.|.+.+.. +
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~l---dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRL---DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhcc---ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence 333 2345578899999999887654 343221 1111 22345789999999999999875 3
Q ss_pred CCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHH---HHHHHHhccCCHHHHHHHHHHHhhCCCCC-Chh
Q 038490 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYN---ALISGFCKEEDFEAAFTILDEMGDKGCKA-NPI 329 (344)
Q Consensus 254 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~ 329 (344)
..++...|.....+..+.|+..+|+.-.++..+. |..... .-..++...++|++|.+-+++..+..-.+ ...
T Consensus 283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~ 358 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRR 358 (486)
T ss_pred cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHH
Confidence 4556677777788889999999999999988875 333322 22345667789999999999887653332 233
Q ss_pred hHHHHHHHH
Q 038490 330 SYNVILGGL 338 (344)
Q Consensus 330 ~~~~ll~~~ 338 (344)
++.-...++
T Consensus 359 ~l~~A~~aL 367 (486)
T KOG0550|consen 359 TLREAQLAL 367 (486)
T ss_pred HHHHHHHHH
Confidence 444443333
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.91 E-value=0.0066 Score=47.75 Aligned_cols=58 Identities=12% Similarity=-0.004 Sum_probs=25.7
Q ss_pred HHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHH---HHHHHHHHhcccHHHHHHHHHHHHhc
Q 038490 53 IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF---CNVIGFYGRARLLERALQMFDEMSSF 112 (344)
Q Consensus 53 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~ 112 (344)
....+.+.|++++|.+.|+.+.... +-+.... -.++.++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3334444555555555555554431 1111111 22334445555555555555555543
No 179
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.0019 Score=50.91 Aligned_cols=113 Identities=17% Similarity=0.112 Sum_probs=77.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CcCcHHHHHHHHHHcCCCCChhhH
Q 038490 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG---RKNEFPAILKEMKERGCKPNSVTY 296 (344)
Q Consensus 220 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~ 296 (344)
+.|...|..|...|...|+.+.|..-|....+...+ ++..+..+..++.... +..++..+|+++...... |+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 556777888888888888888888888887776433 6666666666655433 234677788887776433 66666
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 038490 297 NALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336 (344)
Q Consensus 297 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 336 (344)
..|...+...|++.+|...|+.|.+. -|....+..+|+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 66677778888888888888888774 244444555444
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.89 E-value=0.0014 Score=44.98 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=23.3
Q ss_pred HHHhcccHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 038490 92 FYGRARLLERALQMFDEMSSFNVQMT--VKFFNTLLNPKLTCGKLDRMKELFQIMEK 146 (344)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 146 (344)
++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..+++....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444443222 12233333444444444444444444433
No 181
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.0029 Score=48.72 Aligned_cols=128 Identities=13% Similarity=0.086 Sum_probs=54.5
Q ss_pred HHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHH
Q 038490 53 IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFN-----VQMTVKFFNTLLNP 127 (344)
Q Consensus 53 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~ 127 (344)
++.++.-.|.+.-....++++.+.+ -+.++.....|++.--+.||.+.|...|+...+.. +.-...+.......
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 3333444444444444555544431 12233444444444445555555555555443221 11111122222223
Q ss_pred HHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhC
Q 038490 128 KLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (344)
|.-.+++..|...+.++...++.++..-|.-.-+..-.|+..+|.+.++.|...
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred eecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444445555555544444444444444444444445555555555555444
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.83 E-value=0.0019 Score=52.31 Aligned_cols=206 Identities=12% Similarity=0.089 Sum_probs=109.9
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHhhhcC---CCCCc-hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHH
Q 038490 47 LLHYDLIITKLGRAKMFDEMQQILHQLKHDT---RIVPK-EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122 (344)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 122 (344)
...|......|...|++++|.+.|.+...-. +-+.+ ...|.....+|.+ .++++|.+. |.
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~---------------~~ 98 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIEC---------------YE 98 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHH---------------HH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHH---------------HH
Confidence 3346666677777888888888777754321 00000 1112222222222 233333333 44
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhh-CChhHHHHHHHHHhhC----CCC-cCHhhHHHHHHH
Q 038490 123 TLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS-RRLEDAWKVFDEMVKR----RLQ-PTLVTFGTLIYG 196 (344)
Q Consensus 123 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~ 196 (344)
..+..|...|++..|-..+..+ ...|... |+++.|++.|++..+. |.. .-...+..+...
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~~l--------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLKEL--------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHH--------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 4455566777777766655544 4555555 7888888888776542 211 112345566778
Q ss_pred HHhhchHHHHHHHHHHHHHhcCC----CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC--HHHHHHHHHH
Q 038490 197 LCLELRVDEALKLKEDIMRVYNV----KPDGQ-VFASLIKGLCAVGELSLALGVKEEMVRDKI--EMD--AGIYSSLISA 267 (344)
Q Consensus 197 ~~~~~~~~~a~~~~~~~~~~~~~----~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~--~~~~~~l~~~ 267 (344)
+.+.|++++|..+|+++....-- ..+.. .+-..+-++...||+..|.+.+++.....+ ..+ ......|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 88999999999999987654211 11221 233344467778999999999999886532 212 2334445554
Q ss_pred HHHcCCcCcHHHHHHH
Q 038490 268 LFKAGRKNEFPAILKE 283 (344)
Q Consensus 268 ~~~~g~~~~a~~~~~~ 283 (344)
| +.|+.+.....+.+
T Consensus 245 ~-~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 245 Y-EEGDVEAFTEAVAE 259 (282)
T ss_dssp H-HTT-CCCHHHHCHH
T ss_pred H-HhCCHHHHHHHHHH
Confidence 4 34555544444433
No 183
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.81 E-value=0.013 Score=47.99 Aligned_cols=110 Identities=18% Similarity=0.157 Sum_probs=82.5
Q ss_pred HhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038490 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS 266 (344)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 266 (344)
..+.+..+.-+...|+...|.++..+. . .|+..-|...+.+++..+++++..++... . -++..|..++.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~ 245 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVE 245 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHH
Confidence 345566677777888888887776552 3 47888899999999999999987765432 1 25577899999
Q ss_pred HHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHH
Q 038490 267 ALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILD 317 (344)
Q Consensus 267 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 317 (344)
+|.+.|+..+|..+..++ .+..-+..|.+.|++.+|.+.--
T Consensus 246 ~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998888761 22456677888888888876543
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.78 E-value=0.00019 Score=43.42 Aligned_cols=55 Identities=11% Similarity=0.064 Sum_probs=23.3
Q ss_pred HHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 038490 55 TKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111 (344)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 111 (344)
..+.+.|++++|.+.|+.+.+.. +-+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444431 22333444444444444444444444444443
No 185
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.77 E-value=0.0091 Score=45.68 Aligned_cols=178 Identities=12% Similarity=0.025 Sum_probs=89.2
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCC-chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 47 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVP-KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125 (344)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (344)
...+-.....+.+.|++.+|.+.|+.+.......| .....-.++.++.+.|+++.|...++..++.-..-...-+...+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 44455566677788888888888888887531111 12345557778888888888888888887653111111122222
Q ss_pred HHHHhcC-------------ChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHH
Q 038490 126 NPKLTCG-------------KLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT 192 (344)
Q Consensus 126 ~~~~~~~-------------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 192 (344)
.+.+... ....|... +..++.-|=.+.-..+|...+..+.+. =...--.
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~--------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ 146 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEE--------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHH--------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHH--------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHH
Confidence 2221111 01122222 233333333344444444444443322 0111112
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHH
Q 038490 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPD-GQVFASLIKGLCAVGELSLA 242 (344)
Q Consensus 193 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 242 (344)
+...|.+.|.+..|..-++.+++...-.+. ......++.++.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 455677777777777777777765321111 23445666667777766643
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.75 E-value=0.00014 Score=44.53 Aligned_cols=52 Identities=10% Similarity=0.113 Sum_probs=23.7
Q ss_pred hcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 038490 59 RAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112 (344)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 112 (344)
+.|++++|+++|+.+.... +-+......+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555555544431 223444444445555555555555555544443
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.73 E-value=9.2e-05 Score=45.35 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=21.9
Q ss_pred cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 038490 96 ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK 146 (344)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 146 (344)
.|++++|++.|+.+.... +-+..++..+..+|.+.|++++|..+++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444433 33444444444444444444444444444443
No 188
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0029 Score=49.87 Aligned_cols=106 Identities=8% Similarity=-0.001 Sum_probs=78.3
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhC---ChhHHHHHHHHHhhCCCCc
Q 038490 109 MSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSR---RLEDAWKVFDEMVKRRLQP 185 (344)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~ 185 (344)
-+..+ +-|...|..|...|...|+.+.|...|....+..+++...+..+..++.... ...++..+|+++.... +-
T Consensus 148 ~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~ 225 (287)
T COG4235 148 HLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PA 225 (287)
T ss_pred HHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-Cc
Confidence 33444 6677888888888888888888888888888877777777777776655433 3467788888887764 33
Q ss_pred CHhhHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 038490 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216 (344)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 216 (344)
++.+...+...+...|++.+|...|+.|++.
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666666777788888888888888887764
No 189
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00079 Score=52.74 Aligned_cols=102 Identities=8% Similarity=0.092 Sum_probs=77.4
Q ss_pred HHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHH
Q 038490 93 YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAW 172 (344)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 172 (344)
..+.+++.+|+..|.+.++.. +-|...|..=..+|.+.|.++.|.+-.+......+....+|..|..+|...|++++|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 456788888888888888775 5666677777788888888888888888887777777778888888888888888888
Q ss_pred HHHHHHhhCCCCcCHhhHHHHHHHH
Q 038490 173 KVFDEMVKRRLQPTLVTFGTLIYGL 197 (344)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~l~~~~ 197 (344)
+.|++.++. .|+-.+|-.=+...
T Consensus 170 ~aykKaLel--dP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 170 EAYKKALEL--DPDNESYKSNLKIA 192 (304)
T ss_pred HHHHhhhcc--CCCcHHHHHHHHHH
Confidence 888877754 56666666555443
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.71 E-value=0.0032 Score=43.16 Aligned_cols=94 Identities=7% Similarity=-0.069 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCc--hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCC---CHHHHHHH
Q 038490 50 YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK--EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQM---TVKFFNTL 124 (344)
Q Consensus 50 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l 124 (344)
......++-..|+.++|+.+|++.... |.... ...+..+.+.+...|++++|..+++...... +. +......+
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFL 81 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHH
Confidence 345677888999999999999999886 55443 3466778899999999999999999998753 22 33344445
Q ss_pred HHHHHhcCChHHHHHHHHHHh
Q 038490 125 LNPKLTCGKLDRMKELFQIME 145 (344)
Q Consensus 125 ~~~~~~~~~~~~a~~~~~~~~ 145 (344)
.-++...|+.++|...+-...
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 557778899999998876554
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.71 E-value=0.0003 Score=43.17 Aligned_cols=64 Identities=11% Similarity=0.017 Sum_probs=32.6
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcc-cHHHHHHHHHHHHh
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR-LLERALQMFDEMSS 111 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 111 (344)
+...|..+...+...|++++|+..|.+..+.. +.+...+..+..++...| ++++|++.++..++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34445555555555555555555555555432 233444555555555555 45555555555443
No 192
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.70 E-value=0.0018 Score=48.52 Aligned_cols=116 Identities=9% Similarity=0.066 Sum_probs=69.0
Q ss_pred CCcccHHHHHHHHHh-----hCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHH
Q 038490 150 PDACSYNILIHGCVV-----SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224 (344)
Q Consensus 150 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 224 (344)
.+..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+.
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F---------- 112 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF---------- 112 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh----------
Confidence 455666666666653 34555555666666666666666666666655432 2111 111111111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCc-CcHHHHHHHHH
Q 038490 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK-NEFPAILKEMK 285 (344)
Q Consensus 225 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 285 (344)
.- .-.+-+-|++++++|...|+-||..++..+++.|.+.+.. .+..++.-.|.
T Consensus 113 ------~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 113 ------MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred ------cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 00 1124567899999999999999999999999999877643 23344444443
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.68 E-value=0.013 Score=44.79 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=20.3
Q ss_pred HHHHHHHcCCcCcHHHHHHHHHHcCCCCChh----hHHHHHHHHhccCCHH
Q 038490 264 LISALFKAGRKNEFPAILKEMKERGCKPNSV----TYNALISGFCKEEDFE 310 (344)
Q Consensus 264 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~ 310 (344)
+...|.+.|.+..|..-++.+.+. -|+.. ....++.+|.+.|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChH
Confidence 344555555555555555555554 12221 2234444555555544
No 194
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.68 E-value=0.00018 Score=43.55 Aligned_cols=54 Identities=9% Similarity=0.049 Sum_probs=24.3
Q ss_pred HHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 038490 92 FYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK 146 (344)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 146 (344)
.+.+.|++++|.+.|+.+.+.. +-+...+..+..++...|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444444443 23344444444444444444444444444433
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.0033 Score=48.45 Aligned_cols=140 Identities=13% Similarity=0.034 Sum_probs=102.2
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHH-----HHHH
Q 038490 155 YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV-----FASL 229 (344)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~l 229 (344)
.+.++..+.-.|.+.-.+..+.+..+...+.++.....+++.-.+.|+.+.|...|+++.+..+ ..+..+ ....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhh
Confidence 4566777777888888899999988887677888888888888899999999999987654432 223222 3333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHH
Q 038490 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNA 298 (344)
Q Consensus 230 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 298 (344)
...|...+++..|...+.++...+.. |+...|.-.-+..-.|+..+|++.++.|... .|...+-++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 44556677888888888888877644 6666666666666778899999999999887 344444443
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.56 E-value=0.00096 Score=40.88 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 038490 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG-ELSLALGVKEEMVR 251 (344)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 251 (344)
..|..+...+...|++++|+..|.+.++.. +.+...+..+..++.+.| ++++|++.+++..+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344444455555555555555555555432 223444555555555555 45555555555443
No 197
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.017 Score=47.62 Aligned_cols=263 Identities=11% Similarity=-0.075 Sum_probs=156.8
Q ss_pred hhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCc-hhHH
Q 038490 8 LACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK-EIIF 86 (344)
Q Consensus 8 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 86 (344)
.+..+.++.++..|+..+...+.. .+-++..|..-+..+...|++++|.--.+.-.+. +|. ....
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~-----------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~---kd~~~k~~ 120 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDM-----------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRL---KDGFSKGQ 120 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHh-----------CccchhhhchhHHHHHHHHhHhhcccchhhheec---CCCccccc
Confidence 344555566777777777776332 3335666766677777777777777666544332 221 1222
Q ss_pred HHHHHHHHhcccHHHHHHHHHH---------------HHhcCC-CCCHHHHHHH-HHHHHhcCChHHHHHHHHHHhccCC
Q 038490 87 CNVIGFYGRARLLERALQMFDE---------------MSSFNV-QMTVKFFNTL-LNPKLTCGKLDRMKELFQIMEKYVS 149 (344)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~---------------~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~ 149 (344)
...-+++...++..+|.+.++. +..... +|.-..+..+ ..++...|+.++|..+--.+.+...
T Consensus 121 ~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~ 200 (486)
T KOG0550|consen 121 LREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA 200 (486)
T ss_pred cchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc
Confidence 2333344444444444433331 111111 2323334333 3567778999999988888777554
Q ss_pred CCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHH---HH----------HHHHHhhchHHHHHHHHHHHHHh
Q 038490 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFG---TL----------IYGLCLELRVDEALKLKEDIMRV 216 (344)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l----------~~~~~~~~~~~~a~~~~~~~~~~ 216 (344)
.+......--.++--.++.+.+...|++.+..+ |+...-. .. ..-..+.|++..|.+.|.+.+..
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i 278 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI 278 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence 444333333344556778888999998877653 3322211 11 12346789999999999987753
Q ss_pred c--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 217 Y--NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 217 ~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
. ...++...|........+.|+..+|+.--+...+.+.. -...|..-..++...+++++|.+-++...+.
T Consensus 279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 34455667777777888999999999888888765321 2223333345666678888888888887655
No 198
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.52 E-value=0.013 Score=51.68 Aligned_cols=239 Identities=11% Similarity=0.012 Sum_probs=126.9
Q ss_pred cchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHH------HHHHHHhcccHHHHHHHHHHHHhcCCCCCH
Q 038490 45 YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN------VIGFYGRARLLERALQMFDEMSSFNVQMTV 118 (344)
Q Consensus 45 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 118 (344)
|.+..|..+.......-.++.|...|-+...-.|++.-...-.. -...-+-.|++++|+++|-++.+++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD----- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD----- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-----
Confidence 35666777766666666666666666665443333211110000 0111122466777777776665442
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccCC--CCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHH
Q 038490 119 KFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196 (344)
Q Consensus 119 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 196 (344)
..+..+.+.|+|-.+.++++.--.... .-..+|+.+...+.....|++|.+.|..-... ...+.+
T Consensus 765 ----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ec 831 (1189)
T KOG2041|consen 765 ----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIEC 831 (1189)
T ss_pred ----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHH
Confidence 234555566666555554433211100 12345666677777777777777776653211 124455
Q ss_pred HHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCc
Q 038490 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276 (344)
Q Consensus 197 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 276 (344)
+.+...+++-+.+... ++.+....-.+.+++...|.-++|.+.+-+.. . |. ..+..|...+++.+
T Consensus 832 ly~le~f~~LE~la~~------Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-pk-----aAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 832 LYRLELFGELEVLART------LPEDSELLPVMADMFTSVGMCDQAVEAYLRRS---L-PK-----AAVHTCVELNQWGE 896 (1189)
T ss_pred HHHHHhhhhHHHHHHh------cCcccchHHHHHHHHHhhchHHHHHHHHHhcc---C-cH-----HHHHHHHHHHHHHH
Confidence 5555555554444433 24455566677778888888887776653322 1 11 34566777777777
Q ss_pred HHHHHHHHHHcCCCCChhhH--------------HHHHHHHhccCCHHHHHHHHHHHh
Q 038490 277 FPAILKEMKERGCKPNSVTY--------------NALISGFCKEEDFEAAFTILDEMG 320 (344)
Q Consensus 277 a~~~~~~~~~~~~~p~~~~~--------------~~l~~~~~~~~~~~~a~~~~~~~~ 320 (344)
|.++-++..- |.+.+. ..-|..+.+.|.+-.|-+++.+|.
T Consensus 897 avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 897 AVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 7776665322 122211 122444556676666677777775
No 199
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.52 E-value=0.037 Score=45.46 Aligned_cols=272 Identities=13% Similarity=0.074 Sum_probs=173.4
Q ss_pred hHHHHHHHHHh--cCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHH--HhcccHHHHHHHHHHHHhcCCCCCHH--HHH
Q 038490 49 HYDLIITKLGR--AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY--GRARLLERALQMFDEMSSFNVQMTVK--FFN 122 (344)
Q Consensus 49 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~ 122 (344)
.|..|-.++.. .|+-..|.++-.+..+. +..|...+..++.+- .-.|+++.|.+-|+.|.. .|... -..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLR 158 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLR 158 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHH
Confidence 46666665544 46777788777665542 345555566665443 347999999999999986 33332 123
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCC-CCcCHhh--HHHHHHHHHh
Q 038490 123 TLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR-LQPTLVT--FGTLIYGLCL 199 (344)
Q Consensus 123 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~~ 199 (344)
.|.-..-+.|+.+.|.+.-+..-..-+.-...+...+...+..|+|+.|+++++.-.... +.++..- -..|+.+-..
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 333344567999999998888877666667888999999999999999999999876542 3333322 2223322111
Q ss_pred ---hchHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcC
Q 038490 200 ---ELRVDEALKLKEDIMRVYNVKPDGQV-FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275 (344)
Q Consensus 200 ---~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 275 (344)
..+...|...-.+.. .+.|+..- --.-..++.+.|+..++-.+++.+-+..+.|+ .+ ..|.+...-+
T Consensus 239 s~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia----~lY~~ar~gd 309 (531)
T COG3898 239 SLLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA----LLYVRARSGD 309 (531)
T ss_pred HHhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH----HHHHHhcCCC
Confidence 223445554444333 34555332 23345678899999999999999998855544 32 3344444445
Q ss_pred cHHHHHHHHHHc-CCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 038490 276 EFPAILKEMKER-GCKP-NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336 (344)
Q Consensus 276 ~a~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 336 (344)
.+..-+++.... .++| +...-..+..+-...|++..|..--+.... ..|....|..|.+
T Consensus 310 ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAd 370 (531)
T COG3898 310 TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLAD 370 (531)
T ss_pred cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHH
Confidence 666666655432 2344 456666777788888998888776666554 3566666665544
No 200
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.52 E-value=0.0026 Score=45.78 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038490 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319 (344)
Q Consensus 262 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 319 (344)
..++..+...|++++|..+.+.+....+- |...|..++.+|...|+...|.++|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444444555555555555555444322 4445555555555555555555555544
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.44 E-value=0.00093 Score=54.69 Aligned_cols=271 Identities=11% Similarity=-0.038 Sum_probs=157.6
Q ss_pred hhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhh---hcCCC-CCchh
Q 038490 9 ACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK---HDTRI-VPKEI 84 (344)
Q Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~-~~~~~ 84 (344)
+..+++.|+.+.-+.+|+...+-+ ...++.-...|..+..+|.-.+++++|++....=. +..|- .-...
T Consensus 24 GERLck~gdcraGv~ff~aA~qvG-------TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVG-------TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhc-------chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 466788999999999999986655 23344445567777888888889999988643211 00010 11122
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHH----HhcCC-CCCHHHHHHHHHHHHhcCC--------------------hHHHHH
Q 038490 85 IFCNVIGFYGRARLLERALQMFDEM----SSFNV-QMTVKFFNTLLNPKLTCGK--------------------LDRMKE 139 (344)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~a~~ 139 (344)
....|...+-..|.+++|+-.-.+- .+.|- ......+-.+...|...|. ++.|.+
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~ 176 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK 176 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence 3333444455556666665433222 22221 1122345556666655442 233444
Q ss_pred HHHHH----hccCC--CCcccHHHHHHHHHhhCChhHHHHHHHHHh----hCCCC-cCHhhHHHHHHHHHhhchHHHHHH
Q 038490 140 LFQIM----EKYVS--PDACSYNILIHGCVVSRRLEDAWKVFDEMV----KRRLQ-PTLVTFGTLIYGLCLELRVDEALK 208 (344)
Q Consensus 140 ~~~~~----~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~ 208 (344)
+|.+- ...+. ....+|..|...|.-.|+++.|+..-+.-. +-|-+ .....+..+..++.-.|+++.|.+
T Consensus 177 fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~e 256 (639)
T KOG1130|consen 177 FYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIE 256 (639)
T ss_pred HHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHH
Confidence 44321 12121 234456666666677788888876654422 22322 123456777788888889999988
Q ss_pred HHHHHHHh----cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHcCCcCcHHH
Q 038490 209 LKEDIMRV----YNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD-----KIEMDAGIYSSLISALFKAGRKNEFPA 279 (344)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~ 279 (344)
.|+..+.. ..-........+|...|.-..++++|+.++.+-+.. +..-....+..|..+|...|..++|+.
T Consensus 257 hYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 257 HYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 88764321 112223445566777777777888888877665421 111245677888888888888888887
Q ss_pred HHHHHHH
Q 038490 280 ILKEMKE 286 (344)
Q Consensus 280 ~~~~~~~ 286 (344)
+.+.-.+
T Consensus 337 fae~hl~ 343 (639)
T KOG1130|consen 337 FAELHLR 343 (639)
T ss_pred HHHHHHH
Confidence 7765443
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.41 E-value=0.00095 Score=48.10 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhh-----CCCCcCHhhH
Q 038490 120 FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK-----RRLQPTLVTF 190 (344)
Q Consensus 120 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 190 (344)
+...++..+...|+++.|..+.+.+....|.+...|..+|.+|...|+...|.++|+++.. .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3455566666777777777777777777777777777777777777777777777777643 3666666543
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.40 E-value=0.0067 Score=48.19 Aligned_cols=62 Identities=11% Similarity=-0.032 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 226 FASLIKGLCAVGELSLALGVKEEMVRDKIE--MDAGIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 226 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
+..+..+|...|++++|...|+.+.+..+. .....+..+...+...|+.++|..+|+.+.+.
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444444444432111 11222333333444444444444444444443
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.37 E-value=0.0025 Score=52.26 Aligned_cols=264 Identities=13% Similarity=0.004 Sum_probs=161.7
Q ss_pred HHHHhcCCchHHHHHHHHhhhcCCCCCch----hHHHHHHHHHHhcccHHHHHHHHHH--HHhc--CC-CCCHHHHHHHH
Q 038490 55 TKLGRAKMFDEMQQILHQLKHDTRIVPKE----IIFCNVIGFYGRARLLERALQMFDE--MSSF--NV-QMTVKFFNTLL 125 (344)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~--~~-~~~~~~~~~l~ 125 (344)
.-+++.|+......+|+...+. |. .|. ..|..|..+|.-.+++++|+++... ...+ |- .-.......|.
T Consensus 25 ERLck~gdcraGv~ff~aA~qv-GT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQV-GT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHh-cc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 4578999999999999999886 32 233 3466677788888899999886532 1111 10 01122333444
Q ss_pred HHHHhcCChHHHHHHHHHH----hccCC--CCcccHHHHHHHHHhhCC--------------------hhHHHHHHHHHh
Q 038490 126 NPKLTCGKLDRMKELFQIM----EKYVS--PDACSYNILIHGCVVSRR--------------------LEDAWKVFDEMV 179 (344)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~----~~~~~--~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~ 179 (344)
+.+--.|.+++|.....+- ++.+. ....++..+...|...|+ ++.|.+.|.+=.
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 5555566777766543322 22221 233445556666654443 233444443321
Q ss_pred ----hCCCC-cCHhhHHHHHHHHHhhchHHHHHHHHHHHH---HhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038490 180 ----KRRLQ-PTLVTFGTLIYGLCLELRVDEALKLKEDIM---RVYNVKP-DGQVFASLIKGLCAVGELSLALGVKEEMV 250 (344)
Q Consensus 180 ----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 250 (344)
+.|-. .-...|..+...|.-.|+++.|+...+.-+ ++.|-.. ....+..+..++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 11110 112345555566667789999987765432 2333222 34568888899999999999999988765
Q ss_pred HC----CC-CCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHH----c-CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHh
Q 038490 251 RD----KI-EMDAGIYSSLISALFKAGRKNEFPAILKEMKE----R-GCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320 (344)
Q Consensus 251 ~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 320 (344)
.. |- .....+.-.|...|.-..++++|+..+.+-.. . ..--....+.+|..+|...|..++|+.+.+.-.
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 32 21 22445566788888888889999988775422 1 112255778899999999999999998877664
No 205
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.36 E-value=0.031 Score=40.92 Aligned_cols=128 Identities=14% Similarity=0.071 Sum_probs=71.7
Q ss_pred CcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHH
Q 038490 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE-MDAGIYS 262 (344)
Q Consensus 184 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 262 (344)
-|++..-..+..+....|+..+|...|++.+. .-+..|....-.+.++....+++..|...++.+.+..+. -++.+.-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 45555555566666667777777777766543 223445556666666666667777777766666654311 0222334
Q ss_pred HHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHH
Q 038490 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFT 314 (344)
Q Consensus 263 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 314 (344)
.+.+.+...|...+|..-|+..... -|+...--.....+.++|+.+++..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 4556666667777677777766665 2333333333344555555554443
No 206
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.36 E-value=0.0046 Score=42.82 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=34.1
Q ss_pred CCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038490 182 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234 (344)
Q Consensus 182 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 234 (344)
...|+..+..+++.+|+..+++..|+++++...+..+++.+...|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34566666666666666666666666666666666666666666666665443
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.35 E-value=0.0017 Score=40.29 Aligned_cols=53 Identities=11% Similarity=0.051 Sum_probs=23.9
Q ss_pred HHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhh
Q 038490 128 KLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180 (344)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (344)
|.+.++++.|..+++.+....|.+...+.....++.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444443
No 208
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.34 E-value=0.063 Score=44.08 Aligned_cols=85 Identities=19% Similarity=0.206 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038490 224 QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303 (344)
Q Consensus 224 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 303 (344)
.+.+.-+.-+...|+...|.++-.+.. -|+..-|...+.+++..++|++-..+... +-++..|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 345555667778899888888766553 36889999999999999999888776543 12568899999999
Q ss_pred hccCCHHHHHHHHHH
Q 038490 304 CKEEDFEAAFTILDE 318 (344)
Q Consensus 304 ~~~~~~~~a~~~~~~ 318 (344)
.+.|...+|..+..+
T Consensus 248 ~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK 262 (319)
T ss_pred HHCCCHHHHHHHHHh
Confidence 999999999998887
No 209
>PRK15331 chaperone protein SicA; Provisional
Probab=97.34 E-value=0.0061 Score=43.78 Aligned_cols=92 Identities=11% Similarity=0.077 Sum_probs=74.0
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCCh
Q 038490 89 VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168 (344)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (344)
....+...|++++|..+|.-+...+ +-+...|..|..++-..+++++|...|...-.....|+..+--...+|...|+.
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3444557899999999999888776 566777888888888889999999998887666666666777788888999999
Q ss_pred hHHHHHHHHHhhC
Q 038490 169 EDAWKVFDEMVKR 181 (344)
Q Consensus 169 ~~a~~~~~~~~~~ 181 (344)
+.|...|+...+.
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 9999998887764
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.34 E-value=0.0059 Score=48.48 Aligned_cols=97 Identities=12% Similarity=-0.025 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCCCC---cccHHHHHHHHHhhCChhHHHHHHHHHhhCCC--CcCHhhHHHHH
Q 038490 120 FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPD---ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL--QPTLVTFGTLI 194 (344)
Q Consensus 120 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 194 (344)
.|...+..+.+.|++++|...|+.+....|.+ ..++..+...|...|++++|...|+.+.+.-. +.....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 34444444455667777777777766655432 24555666677777777777777777665411 11123333344
Q ss_pred HHHHhhchHHHHHHHHHHHHHh
Q 038490 195 YGLCLELRVDEALKLKEDIMRV 216 (344)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~~~~~ 216 (344)
..+...|+.++|..+|+.+++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5556677777777777776654
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.28 E-value=0.002 Score=39.91 Aligned_cols=55 Identities=9% Similarity=0.046 Sum_probs=28.2
Q ss_pred HHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 038490 56 KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112 (344)
Q Consensus 56 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 112 (344)
.+.+.+++++|.++++.+.... +.+...+.....++.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455555555555555555431 233444444555555555555555555555544
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.24 E-value=0.09 Score=43.76 Aligned_cols=166 Identities=14% Similarity=0.024 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccCCC----CcccHHHHHHHHHh---hCChhHHHHHHHHHhhCCCCcCHhhHH
Q 038490 119 KFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP----DACSYNILIHGCVV---SRRLEDAWKVFDEMVKRRLQPTLVTFG 191 (344)
Q Consensus 119 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 191 (344)
.+...++-+|-...+++...++++.+...... ....-....-++.+ .|+.++|++++..+......+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 34445556688888899999999988775321 22222334455566 788999999998866666677888887
Q ss_pred HHHHHHHh---------hchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-h---HHHHHHH----HHHHHCC-
Q 038490 192 TLIYGLCL---------ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE-L---SLALGVK----EEMVRDK- 253 (344)
Q Consensus 192 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~---~~a~~~~----~~~~~~~- 253 (344)
.+...|-. ....++|+..|.+..+. .|+...--.++..+...|. . .+..++- ....+.|
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~---~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI---EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC---CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 77765532 22466777777665432 3433222122222222222 1 1222222 1111222
Q ss_pred --CCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 254 --IEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 254 --~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
...+-..+..++.++.-.|+.++|.+..++|.+.
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1224445556666666777777777777777655
No 213
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.24 E-value=0.076 Score=42.92 Aligned_cols=168 Identities=17% Similarity=0.137 Sum_probs=91.1
Q ss_pred hhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcch-----hhHHHHHHHHHhcC-CchHHHHHHHHhhhc----C---
Q 038490 11 LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNL-----LHYDLIITKLGRAK-MFDEMQQILHQLKHD----T--- 77 (344)
Q Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~----~--- 77 (344)
...++|+.+.|..++.++..... ...|+. ..+..+.......+ +++.|..++++..+. .
T Consensus 2 ~A~~~~~~~~A~~~~~K~~~~~~--------~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~ 73 (278)
T PF08631_consen 2 LAWKQGDLDLAEHMYSKAKDLLN--------SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMD 73 (278)
T ss_pred cchhhCCHHHHHHHHHHhhhHHh--------cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcc
Confidence 34578999999999999844321 111221 12222333334455 888887777765432 1
Q ss_pred CCCCch-----hHHHHHHHHHHhcccHH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC
Q 038490 78 RIVPKE-----IIFCNVIGFYGRARLLE---RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS 149 (344)
Q Consensus 78 ~~~~~~-----~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 149 (344)
...|+. .++..++.+|...+..+ +|.++++.+.... +-.+.++..-+..+.+.++.+.+.+++.+|.....
T Consensus 74 ~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 74 KLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 112222 24455666666655543 4555555554432 22344555556666667777888888887776654
Q ss_pred CCcccHHHHHHHHHhh--CChhHHHHHHHHHhhCCCCcCH
Q 038490 150 PDACSYNILIHGCVVS--RRLEDAWKVFDEMVKRRLQPTL 187 (344)
Q Consensus 150 ~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~ 187 (344)
-....+...+..+... .....+...++.+....+.|..
T Consensus 153 ~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 153 HSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred cccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 3445565555555222 2334555555555544344443
No 214
>PRK15331 chaperone protein SicA; Provisional
Probab=97.24 E-value=0.015 Score=41.77 Aligned_cols=88 Identities=9% Similarity=-0.133 Sum_probs=59.0
Q ss_pred HHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcC
Q 038490 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275 (344)
Q Consensus 196 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 275 (344)
-+...|++++|..+|+-+.... +-+..-+..|..++-..+++++|...|......+.. |+..+-....++...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHH
Confidence 3456777777777777755432 334455666666677777777777777776665543 5555666677777777777
Q ss_pred cHHHHHHHHHH
Q 038490 276 EFPAILKEMKE 286 (344)
Q Consensus 276 ~a~~~~~~~~~ 286 (344)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77777777666
No 215
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.19 E-value=0.0089 Score=41.43 Aligned_cols=84 Identities=18% Similarity=0.299 Sum_probs=56.5
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhh--------------cCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKH--------------DTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 111 (344)
|..++..+|.++++.|+.+....+++..-. .....|+..++.+++.+|+..+++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456788899999999999999998876431 112346666667777777777777777777766654
Q ss_pred -cCCCCCHHHHHHHHHHHH
Q 038490 112 -FNVQMTVKFFNTLLNPKL 129 (344)
Q Consensus 112 -~~~~~~~~~~~~l~~~~~ 129 (344)
-+++.+..+|..|++-..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 245555666666665433
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.18 E-value=0.035 Score=46.86 Aligned_cols=68 Identities=6% Similarity=-0.179 Sum_probs=59.4
Q ss_pred CCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch----hHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 038490 42 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE----IIFCNVIGFYGRARLLERALQMFDEMSSF 112 (344)
Q Consensus 42 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 112 (344)
..+.+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|+..+++.++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44567889999999999999999999999998874 4664 35899999999999999999999999885
No 217
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.12 E-value=0.12 Score=43.00 Aligned_cols=169 Identities=14% Similarity=0.100 Sum_probs=108.6
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHH-HhccCCCCcccH
Q 038490 83 EIIFCNVIGFYGRARLLERALQMFDEMSSFN---VQMTVKFFNTLLNPKLT---CGKLDRMKELFQI-MEKYVSPDACSY 155 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~-~~~~~~~~~~~~ 155 (344)
..+...++-.|....+++...++++.+.... +.-...+-....-++.+ .|+.++|..++.. +.....++..++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3445566777999999999999999998752 22234444556666777 8999999999998 555555888899
Q ss_pred HHHHHHHHh---------hCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhch-H---HHHHHH---HHHHHHhcCC
Q 038490 156 NILIHGCVV---------SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR-V---DEALKL---KEDIMRVYNV 219 (344)
Q Consensus 156 ~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~---~~a~~~---~~~~~~~~~~ 219 (344)
..+.+.|-. ....++|...|.+.-+. .|+..+--.+...+...|. . .+..++ +..+.-..|.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 888877632 22367888888876654 2443322222222222222 1 122222 2222222222
Q ss_pred ---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 038490 220 ---KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253 (344)
Q Consensus 220 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 253 (344)
..+--.+..++.++.-.|+.++|.+..++|.+..
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2233346788889999999999999999999874
No 218
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.08 E-value=0.033 Score=47.92 Aligned_cols=154 Identities=16% Similarity=0.145 Sum_probs=64.8
Q ss_pred HHhcCCchHHHHHHH--HhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 038490 57 LGRAKMFDEMQQILH--QLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134 (344)
Q Consensus 57 ~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 134 (344)
..-.++++++.++.+ .+... + | ....+.+++.+.+.|..+.|+++...-. .-.....+.|++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~--i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPN--I-P-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG------HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhhhccc--C-C-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 344555665555543 12211 1 1 2335555566666666666655543211 112233445555
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHH
Q 038490 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214 (344)
Q Consensus 135 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 214 (344)
+.|.++.++. .+...|..|.....+.|+++-|++.|.+..+ +..++-.|.-.|+.+.-.++.+...
T Consensus 335 ~~A~~~a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 335 DIALEIAKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHHCCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 5555544333 2444566666666666666666665555321 2333334445555555444444433
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 038490 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247 (344)
Q Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 247 (344)
... + ++....++.-.|+.+++.+++.
T Consensus 401 ~~~----~---~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 401 ERG----D---INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HTT--------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred Hcc----C---HHHHHHHHHHcCCHHHHHHHHH
Confidence 221 1 2333333444455555554443
No 219
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.21 Score=44.74 Aligned_cols=288 Identities=13% Similarity=0.074 Sum_probs=141.2
Q ss_pred hhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCc--hHHHH-HHHHhhhcCCCCC
Q 038490 5 SIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMF--DEMQQ-ILHQLKHDTRIVP 81 (344)
Q Consensus 5 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~-~~~~~~~~~~~~~ 81 (344)
...+++.+...+.+..|+++-.++... .......|......+.+..+. +++.+ +-+++... ..|
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p-----------~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~--~~~ 506 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLP-----------ESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK--LTP 506 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCc-----------cccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc--CCC
Confidence 345677788889999999999888211 111245566666666655321 22222 22223221 122
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC--------
Q 038490 82 KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ----MTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-------- 149 (344)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------- 149 (344)
...|..+.+-....|+.+.|..+++.=.+.+-. .+..-+...+.-....|+.+....++-.+.+.-.
T Consensus 507 -~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l 585 (829)
T KOG2280|consen 507 -GISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL 585 (829)
T ss_pred -ceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777889999888877643222100 0112234444555566776666666655543211
Q ss_pred ----CCcccHHHHHH--------HHHhhCChhHHHHHHH--HHh----hCCCCcCHhhHHHHHHHHHhhch---------
Q 038490 150 ----PDACSYNILIH--------GCVVSRRLEDAWKVFD--EMV----KRRLQPTLVTFGTLIYGLCLELR--------- 202 (344)
Q Consensus 150 ----~~~~~~~~l~~--------~~~~~~~~~~a~~~~~--~~~----~~~~~~~~~~~~~l~~~~~~~~~--------- 202 (344)
.....|.-+++ .+...++-..+...|. ... ..|..|+.. ....++.+...
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred HhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHHHHHH
Confidence 11111111111 0011111111111111 100 012222222 22223333222
Q ss_pred -HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHH
Q 038490 203 -VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281 (344)
Q Consensus 203 -~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 281 (344)
..+-+++.+.+..+.+..-...+.+--+.-+...|+..+|.++-.+.. -||-..|..-+.+++..+++++-+++-
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 122222333333333333333344445555667777777777665554 356677777777777777776655554
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038490 282 KEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319 (344)
Q Consensus 282 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 319 (344)
+.++ ++.-|.-+..+|.+.|+.++|.+++-+.
T Consensus 739 kskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 739 KSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred hccC------CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 4432 2455666777777777777777766544
No 220
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.02 E-value=0.22 Score=44.36 Aligned_cols=276 Identities=13% Similarity=0.067 Sum_probs=144.7
Q ss_pred cCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHH
Q 038490 15 QKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYG 94 (344)
Q Consensus 15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 94 (344)
-|.+++|.+++-.+.++ | ..|..+.+.|++-.+.++++.--....-..-...++.+...++
T Consensus 747 ~g~feeaek~yld~drr--------------D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa 807 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRR--------------D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFA 807 (1189)
T ss_pred hcchhHhhhhhhccchh--------------h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHH
Confidence 46677777777666211 1 2455666677777776666542211000112345677777777
Q ss_pred hcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHH
Q 038490 95 RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKV 174 (344)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 174 (344)
....|++|.+.|..-.. -...+.++.+..++++-+.+...+. .+....-.+..++.+.|.-++|.+.
T Consensus 808 ~~~~We~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lp----e~s~llp~~a~mf~svGMC~qAV~a 874 (1189)
T KOG2041|consen 808 EMMEWEEAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTLP----EDSELLPVMADMFTSVGMCDQAVEA 874 (1189)
T ss_pred HHHHHHHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcC----cccchHHHHHHHHHhhchHHHHHHH
Confidence 77777777777765332 1234555555555555555554443 4556666778888888888888777
Q ss_pred HHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHH--------------HHHHHHHhcCChH
Q 038490 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA--------------SLIKGLCAVGELS 240 (344)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------~l~~~~~~~~~~~ 240 (344)
+-+. +. | ...+..|...++|.+|.++-++. + -|...+.- --|..+.+.|..-
T Consensus 875 ~Lr~---s~-p-----kaAv~tCv~LnQW~~avelaq~~-~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~ 940 (1189)
T KOG2041|consen 875 YLRR---SL-P-----KAAVHTCVELNQWGEAVELAQRF-Q----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHL 940 (1189)
T ss_pred HHhc---cC-c-----HHHHHHHHHHHHHHHHHHHHHhc-c----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccch
Confidence 6443 21 1 13445677778888887776552 1 12222111 1133344555555
Q ss_pred HHHHHHHHHHH----CCCCCCH----HHHHH-HHHHH----------HHcCCcCcHHHHHHHHHHc-------CCCCChh
Q 038490 241 LALGVKEEMVR----DKIEMDA----GIYSS-LISAL----------FKAGRKNEFPAILKEMKER-------GCKPNSV 294 (344)
Q Consensus 241 ~a~~~~~~~~~----~~~~~~~----~~~~~-l~~~~----------~~~g~~~~a~~~~~~~~~~-------~~~p~~~ 294 (344)
.|-+++.+|.+ .+.++-. .+..+ |+.-+ -..|..++|..+++..... +.---..
T Consensus 941 daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAE 1020 (1189)
T KOG2041|consen 941 DAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAE 1020 (1189)
T ss_pred hHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHH
Confidence 55555555543 2322211 11111 11111 2346666777655543211 0111223
Q ss_pred hHH--HHHHHHhccCCHHHHHHHHHHHhhC-CCCCChhhHHHHHH
Q 038490 295 TYN--ALISGFCKEEDFEAAFTILDEMGDK-GCKANPISYNVILG 336 (344)
Q Consensus 295 ~~~--~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~ 336 (344)
.|. .|..-....|.++.|++.--.+.+. .+-|....|+.|.-
T Consensus 1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllAL 1065 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLAL 1065 (1189)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHH
Confidence 333 3344455678888888765555432 35566666665543
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.96 E-value=0.0042 Score=39.10 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHhhhc---CC-CCCc-hhHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 038490 47 LLHYDLIITKLGRAKMFDEMQQILHQLKHD---TR-IVPK-EIIFCNVIGFYGRARLLERALQMFDEMSS 111 (344)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 111 (344)
..+|+.+...|...|++++|++.|++..+. .| -.|+ ..++..+..++...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456777888888888888888888776532 11 1122 34566677777788888888888777653
No 222
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.95 E-value=0.0072 Score=47.10 Aligned_cols=101 Identities=12% Similarity=-0.011 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch---hHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCCCHHHHH
Q 038490 48 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE---IIFCNVIGFYGRARLLERALQMFDEMSSFN--VQMTVKFFN 122 (344)
Q Consensus 48 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 122 (344)
..|+.-+. +.+.|++..|.+-|....+.+ +-+. ..+--|..++...|++++|..+|..+.+.- .+--+..+-
T Consensus 143 ~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 143 KLYNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 36665555 445667888888888888752 3222 334447888888888888888888887643 122245677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhccCCCC
Q 038490 123 TLLNPKLTCGKLDRMKELFQIMEKYVSPD 151 (344)
Q Consensus 123 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 151 (344)
-|..+..+.|+.++|..+|+++.+..|.+
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 77778888888888888888888766533
No 223
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.22 Score=44.68 Aligned_cols=111 Identities=15% Similarity=0.170 Sum_probs=62.2
Q ss_pred cCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 038490 185 PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264 (344)
Q Consensus 185 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 264 (344)
....+.+--+.-+...|+..+|.++-.+. + -||...|-.=+.+++..+++++-+++-+... .+.-|.-.
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~F-k----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PF 750 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDF-K----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPF 750 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhc-C----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhH
Confidence 33444444555556666666666665552 1 4566666666666666666666554443332 23445566
Q ss_pred HHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHH
Q 038490 265 ISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTI 315 (344)
Q Consensus 265 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 315 (344)
+.+|.+.|+.++|...+.+.... . -...+|.+.|++.+|.++
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHH
Confidence 66777777777777766654332 1 234555555665555543
No 224
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.026 Score=46.51 Aligned_cols=94 Identities=10% Similarity=-0.016 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHH-
Q 038490 120 FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC- 198 (344)
Q Consensus 120 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~- 198 (344)
+++.+.-++.+.+++..|+...+......+.|.-...--..++...|+++.|...|+++.+. .|+....+.=+..|.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666555666666666666666666666654 333333333222222
Q ss_pred hhch-HHHHHHHHHHHHH
Q 038490 199 LELR-VDEALKLKEDIMR 215 (344)
Q Consensus 199 ~~~~-~~~a~~~~~~~~~ 215 (344)
+..+ .+...++|..|..
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 2222 2233555655554
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.86 E-value=0.011 Score=37.17 Aligned_cols=60 Identities=22% Similarity=0.233 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHhcCC----CCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038490 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNV----KPD-GQVFASLIKGLCAVGELSLALGVKEEM 249 (344)
Q Consensus 190 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 249 (344)
++.+...|...|++++|+..+++.++.... .|+ ..++..+..++...|++++|++.+++.
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444555555555555444322100 011 233444444555555555555555444
No 226
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.85 E-value=0.3 Score=43.19 Aligned_cols=90 Identities=17% Similarity=0.141 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhh------
Q 038490 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT------ 295 (344)
Q Consensus 222 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~------ 295 (344)
+..+...+...+.+...+..|-++|..|-.. ..++......+++.+|..+-++..+. .||+..
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 3445555556666777788888888887542 35677788899999999998877664 344332
Q ss_pred -----HHHHHHHHhccCCHHHHHHHHHHHhhC
Q 038490 296 -----YNALISGFCKEEDFEAAFTILDEMGDK 322 (344)
Q Consensus 296 -----~~~l~~~~~~~~~~~~a~~~~~~~~~~ 322 (344)
|...-.+|.+.|+-.+|.++++++...
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 334446788899999999999988643
No 227
>PRK11906 transcriptional regulator; Provisional
Probab=96.80 E-value=0.26 Score=41.99 Aligned_cols=163 Identities=14% Similarity=0.117 Sum_probs=94.0
Q ss_pred hhH--HHHHHHHHhc-----CCchHHHHHHHHhhhcCCCCCc-hhHHHHHHHHHH---------hcccHHHHHHHHHHHH
Q 038490 48 LHY--DLIITKLGRA-----KMFDEMQQILHQLKHDTRIVPK-EIIFCNVIGFYG---------RARLLERALQMFDEMS 110 (344)
Q Consensus 48 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 110 (344)
.+| ..++.+.... ...+.|..+|.+........|+ ...|..+..++. ...+..+|.++.+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 5555555442 2345677778777733234444 333333332221 1334556677777777
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCC-CcCHhh
Q 038490 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL-QPTLVT 189 (344)
Q Consensus 111 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~ 189 (344)
+.+ +.|......+..+....++++.|..+|++.....|....+|........-.|+.++|.+.+++..+... +.....
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 776 667777777777677777788888888887777766666666666666777888888888877555421 111122
Q ss_pred HHHHHHHHHhhchHHHHHHHHHH
Q 038490 190 FGTLIYGLCLELRVDEALKLKED 212 (344)
Q Consensus 190 ~~~l~~~~~~~~~~~~a~~~~~~ 212 (344)
....+..|+. ...+.|++++-+
T Consensus 411 ~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 411 IKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHcC-CchhhhHHHHhh
Confidence 2222334443 345566665543
No 228
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.80 E-value=0.056 Score=47.19 Aligned_cols=168 Identities=17% Similarity=0.216 Sum_probs=101.1
Q ss_pred CCchhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCC--CcchhhHHHHHHHHHh----cCCchHHHHHHHHhhh
Q 038490 2 PTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPF--RYNLLHYDLIITKLGR----AKMFDEMQQILHQLKH 75 (344)
Q Consensus 2 p~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 75 (344)
|....+++..+.=.||-+.+++++....+..+ +... ..-.-.|+.++..+.. ....+.|.++++.+.+
T Consensus 188 Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~------i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~ 261 (468)
T PF10300_consen 188 PPKVLKLLSFVGFSGDRELGLRLLWEASKSEN------IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK 261 (468)
T ss_pred CHHHHHHHhhcCcCCcHHHHHHHHHHHhccCC------cchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH
Confidence 66778888888889999999999988744332 1110 0112234445544433 4567778888888887
Q ss_pred cCCCCCchhHHH-HHHHHHHhcccHHHHHHHHHHHHhcC--C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCC
Q 038490 76 DTRIVPKEIIFC-NVIGFYGRARLLERALQMFDEMSSFN--V-QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPD 151 (344)
Q Consensus 76 ~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 151 (344)
.. |+...|. .-.+.+...|++++|++.|+...... . +.....+--+.-++.-.++|++|...|..+.+...-+
T Consensus 262 ~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS 338 (468)
T PF10300_consen 262 RY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS 338 (468)
T ss_pred hC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH
Confidence 53 5554444 34566777888999998888765311 1 1122234445555666777777777777777654444
Q ss_pred cccHHHHH-HHHHhhCCh-------hHHHHHHHHH
Q 038490 152 ACSYNILI-HGCVVSRRL-------EDAWKVFDEM 178 (344)
Q Consensus 152 ~~~~~~l~-~~~~~~~~~-------~~a~~~~~~~ 178 (344)
...|.-+. .++...|+. ++|.++|.+.
T Consensus 339 ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 339 KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 44443333 233445555 5566666554
No 229
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.18 Score=40.79 Aligned_cols=150 Identities=10% Similarity=-0.027 Sum_probs=99.9
Q ss_pred ccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHH----H
Q 038490 14 LQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN----V 89 (344)
Q Consensus 14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----l 89 (344)
..|+..+|-..++++ +..+|.|..++...=+++.-.|+.+.-...++++... ..|+...|.- .
T Consensus 115 ~~g~~h~a~~~wdkl-----------L~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~Gmy 181 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKL-----------LDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMY 181 (491)
T ss_pred ccccccHHHHHHHHH-----------HHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHH
Confidence 356666666666666 4456668888888888888888888888888887764 2455433322 2
Q ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC----CCcccHHHHHHHHHhh
Q 038490 90 IGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHGCVVS 165 (344)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~ 165 (344)
.-++...|-+++|++.-++..+.+ +.|...-..+...+-..|++.++.++..+-...-. .-..-|--..-.+...
T Consensus 182 aFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ 260 (491)
T KOG2610|consen 182 AFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEG 260 (491)
T ss_pred HhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcc
Confidence 333456788888888888888876 66777777777777788888888877765543211 1111222333445666
Q ss_pred CChhHHHHHHHH
Q 038490 166 RRLEDAWKVFDE 177 (344)
Q Consensus 166 ~~~~~a~~~~~~ 177 (344)
+.++.|+++|+.
T Consensus 261 aeye~aleIyD~ 272 (491)
T KOG2610|consen 261 AEYEKALEIYDR 272 (491)
T ss_pred cchhHHHHHHHH
Confidence 888888888876
No 230
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.73 E-value=0.014 Score=45.64 Aligned_cols=89 Identities=18% Similarity=0.249 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----------------CcCcHH
Q 038490 220 KPDGQVFASLIKGLCAV-----GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG----------------RKNEFP 278 (344)
Q Consensus 220 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~a~ 278 (344)
.-|..+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|++.+-+.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 44666777777776543 456666677788888888888888888888865432 223456
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 038490 279 AILKEMKERGCKPNSVTYNALISGFCKEED 308 (344)
Q Consensus 279 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 308 (344)
.++++|...|+.||..+-..|+.++.+.+.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 667777777777777777777777766654
No 231
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.057 Score=44.64 Aligned_cols=123 Identities=14% Similarity=0.026 Sum_probs=83.5
Q ss_pred HHHhhchHHHHHHHHHHHHHhcC----C---------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 038490 196 GLCLELRVDEALKLKEDIMRVYN----V---------KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS 262 (344)
Q Consensus 196 ~~~~~~~~~~a~~~~~~~~~~~~----~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 262 (344)
.+.+.|++..|...|+++..... . ..-..++..+..++.+.+++..|++.-...+..+.. |+...-
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHH
Confidence 45566666666666655433211 1 112235777888899999999999999999988754 787777
Q ss_pred HHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhh-HHHHHHHHhccCCH-HHHHHHHHHHhh
Q 038490 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVT-YNALISGFCKEEDF-EAAFTILDEMGD 321 (344)
Q Consensus 263 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~-~~a~~~~~~~~~ 321 (344)
-=..++...|+++.|+..|+++.+. .|+-.. -+.++..-.+.... +...++|..|..
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7788999999999999999999886 454444 44444444444443 344678888854
No 232
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.67 E-value=0.12 Score=36.31 Aligned_cols=55 Identities=7% Similarity=0.068 Sum_probs=25.1
Q ss_pred hcccHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC
Q 038490 95 RARLLERALQMFDEMSSFNV--QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS 149 (344)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 149 (344)
+.|++++|.+.|+.+..+-. +-...+.-.++.+|.+.++++.|...+++..+..|
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 44555555555555544310 11223334444455555555555555555444444
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.67 E-value=0.19 Score=43.95 Aligned_cols=155 Identities=16% Similarity=0.140 Sum_probs=97.9
Q ss_pred HHhcCChHHHHHHHHHHhccCC-CCc------ccHHHHHHHHHh----hCChhHHHHHHHHHhhCCCCcCHhhHHHH-HH
Q 038490 128 KLTCGKLDRMKELFQIMEKYVS-PDA------CSYNILIHGCVV----SRRLEDAWKVFDEMVKRRLQPTLVTFGTL-IY 195 (344)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~~~-~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~ 195 (344)
..-.||-+.+++.+....+... ..+ ..|...+..++. ..+.+.|.++++.+.++ -|+...|... .+
T Consensus 198 vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR 275 (468)
T PF10300_consen 198 VGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGR 275 (468)
T ss_pred cCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 3456888888888887765433 221 123333333332 45678899999998877 4566555433 34
Q ss_pred HHHhhchHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcC
Q 038490 196 GLCLELRVDEALKLKEDIMRVYN--VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLIS-ALFKAG 272 (344)
Q Consensus 196 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g 272 (344)
.+...|+.++|++.|++...... .......+--+.-++.-..++++|.+.|..+.+..- .+...|.-+.. ++...|
T Consensus 276 ~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~ 354 (468)
T PF10300_consen 276 LERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACLLMLG 354 (468)
T ss_pred HHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhc
Confidence 56678999999999987553111 112233455566677788999999999999987642 24555555443 344567
Q ss_pred Cc-------CcHHHHHHHHH
Q 038490 273 RK-------NEFPAILKEMK 285 (344)
Q Consensus 273 ~~-------~~a~~~~~~~~ 285 (344)
+. ++|.++|.+..
T Consensus 355 ~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 355 REEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred cchhhhhhHHHHHHHHHHHH
Confidence 77 77888887654
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.64 E-value=0.047 Score=46.17 Aligned_cols=64 Identities=20% Similarity=0.097 Sum_probs=45.0
Q ss_pred CHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038490 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDG----QVFASLIKGLCAVGELSLALGVKEEMVRD 252 (344)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (344)
+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|.+.|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556677777777777777777777776654 3442 34677777777777777777777777764
No 235
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.59 E-value=0.37 Score=40.72 Aligned_cols=145 Identities=16% Similarity=0.126 Sum_probs=93.0
Q ss_pred ccHHHHHHHHHhhCChhHHHHHHHHHhhCC-CCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038490 153 CSYNILIHGCVVSRRLEDAWKVFDEMVKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIK 231 (344)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 231 (344)
.+|-..+....+..-++.|..+|-+..+.| +.+++..++++|..+ ..|+...|..+|+--+... +.+.......+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKF--PDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 345556666666677888888888888777 566777777777544 4677778888887766542 333344455566
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038490 232 GLCAVGELSLALGVKEEMVRDKIEM--DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303 (344)
Q Consensus 232 ~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 303 (344)
.+...++-+.|..+|+..... +.. -..+|..++..-..-|+...+..+=++|... .|...+...+...|
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 667778888888888855432 111 2456777787777788887777777777664 34443333333333
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.31 Score=38.78 Aligned_cols=146 Identities=14% Similarity=0.094 Sum_probs=82.6
Q ss_pred HHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHH
Q 038490 127 PKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA 206 (344)
Q Consensus 127 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 206 (344)
.....|++..|...|+...+..+.+...--.++.+|...|+.+.|..++..+...--.........-+..+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 45567778888888887777666666777777888888888888888887765442111122212223333333333333
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCcCc
Q 038490 207 LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD--KIEMDAGIYSSLISALFKAGRKNE 276 (344)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~ 276 (344)
..+-++.-. -+.|...-..+...+...|+.+.|.+.+-.+.+. +.. |...-..++..+.-.|.-+.
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCH
Confidence 333333211 1235555556666677777777777666555543 222 44555566666665554443
No 237
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.48 E-value=0.44 Score=40.30 Aligned_cols=61 Identities=13% Similarity=0.223 Sum_probs=44.6
Q ss_pred HHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 038490 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVIL 335 (344)
Q Consensus 268 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll 335 (344)
+...|++.++.-.-..+.+ +.|++.+|..+.-+.....++++|+.++.++ +|+..++++=+
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dskv 532 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSKV 532 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHHH
Confidence 3456666666655555554 5789999999998999999999999999865 45666655443
No 238
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.40 E-value=0.4 Score=38.84 Aligned_cols=124 Identities=10% Similarity=0.115 Sum_probs=60.7
Q ss_pred HhcCCchHHHHHHHHhhhcC-CCCCchh-----HHHHHHHHHHhcc-cHHHHHHHHHHHHhc----C----CCCC-----
Q 038490 58 GRAKMFDEMQQILHQLKHDT-RIVPKEI-----IFCNVIGFYGRAR-LLERALQMFDEMSSF----N----VQMT----- 117 (344)
Q Consensus 58 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~-----~~~~l~~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~----- 117 (344)
.+.|+.+.|..++.+..... ...|+.. .+..+.......+ +++.|..++++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888988888876542 1233321 1111222223444 777776666665432 1 1111
Q ss_pred HHHHHHHHHHHHhcCChH---HHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhC
Q 038490 118 VKFFNTLLNPKLTCGKLD---RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 118 ~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (344)
..+...++.+|...+..+ +|..+++.+....+.....+..-+..+.+.++.+.+.+++.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 123444455555444432 3334444443333333444444455555555555555555555544
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.36 E-value=0.1 Score=40.92 Aligned_cols=89 Identities=16% Similarity=0.160 Sum_probs=46.5
Q ss_pred hhCChhHHHHHHHHHhhCCCC--cCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChH
Q 038490 164 VSRRLEDAWKVFDEMVKRRLQ--PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD-GQVFASLIKGLCAVGELS 240 (344)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 240 (344)
+.|++..|...|....+.... -....+--|..++...|++++|..+|..+.+..+-.|- +..+--+..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 445566666666665554211 01112223555566666666666666665554433332 344555555555666666
Q ss_pred HHHHHHHHHHHC
Q 038490 241 LALGVKEEMVRD 252 (344)
Q Consensus 241 ~a~~~~~~~~~~ 252 (344)
+|..+|+++.+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.38 Score=38.28 Aligned_cols=147 Identities=13% Similarity=0.032 Sum_probs=104.2
Q ss_pred HHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC-CCcccHHHHHHHHHhhCChh
Q 038490 91 GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSRRLE 169 (344)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 169 (344)
......|++.+|...|....... +-+......++.+|...|+.+.|..++..+..... ........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34567899999999999998875 55567788899999999999999999998865433 12222233456666666666
Q ss_pred HHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 038490 170 DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240 (344)
Q Consensus 170 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 240 (344)
+...+-.+.-.. +-|...-..+...+...|+.+.|...+-.+++...-..|...-..++..+.-.|.-+
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 666655555433 225555666778888999999999988888776554556666677777776666433
No 241
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.32 E-value=0.06 Score=46.37 Aligned_cols=157 Identities=17% Similarity=0.081 Sum_probs=109.3
Q ss_pred hhhcccCCchHHhhhhc--CCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHH
Q 038490 10 CLPRLQKDPKLALQLFK--NPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFC 87 (344)
Q Consensus 10 ~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (344)
....-.++++++.++.+ .+ .+.+ +....+.++..+.+.|..+.|+++...-..
T Consensus 269 k~av~~~d~~~v~~~i~~~~l-----------l~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------ 323 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNL-----------LPNI--PKDQGQSIARFLEKKGYPELALQFVTDPDH------------ 323 (443)
T ss_dssp HHHHHTT-HHH-----HHHHT-----------GGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------
T ss_pred HHHHHcCChhhhhhhhhhhhh-----------cccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------
Confidence 34455688888666554 22 1122 245588899999999999999987543222
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCC
Q 038490 88 NVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRR 167 (344)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (344)
-.....+.|+++.|.++.++ ..+...|..|.....+.|+++-|+..|++..+ +..|+-.|.-.|+
T Consensus 324 -rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~ 388 (443)
T PF04053_consen 324 -RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGD 388 (443)
T ss_dssp -HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-
T ss_pred -HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCC
Confidence 24455688999999887654 34677999999999999999999999998864 7888889999999
Q ss_pred hhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHH
Q 038490 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212 (344)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 212 (344)
.+...++.+....+|. ++..+.++...|+.++..+++.+
T Consensus 389 ~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 389 REKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 9998888888877752 45556666778999999888866
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.32 E-value=0.19 Score=35.44 Aligned_cols=73 Identities=16% Similarity=0.116 Sum_probs=40.2
Q ss_pred HHhhchHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038490 197 LCLELRVDEALKLKEDIMRVYNVKP-DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269 (344)
Q Consensus 197 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 269 (344)
..+.|++++|.+.|+.+.......+ .....-.++.+|.+.+++++|...+++.++..+..--.-|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3556667777666666554432222 233445566666677777777777776666654422333444444443
No 243
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.45 Score=38.62 Aligned_cols=151 Identities=8% Similarity=-0.072 Sum_probs=79.2
Q ss_pred cCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHhcCChHH
Q 038490 60 AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF---NVQMTVKFFNTLLNPKLTCGKLDR 136 (344)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 136 (344)
.|+..+|-..++++.+. .+.|...+...=.+|.-.|+.+.-...++++... ++|....+-..+.-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 35555555556666553 3455555555555666666666666666666533 222222233333444555666677
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCc---CHhhHHHHHHHHHhhchHHHHHHHHHH
Q 038490 137 MKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP---TLVTFGTLIYGLCLELRVDEALKLKED 212 (344)
Q Consensus 137 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 212 (344)
|++.-++..+.++.|..+-.++...+-..|+..++.+...+-.+.--.. -...|-...-.+...+.++.|+.+|++
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 7766666666655666666666666666666666666655433220000 011111112233445666777766654
No 244
>PRK11906 transcriptional regulator; Provisional
Probab=96.28 E-value=0.47 Score=40.50 Aligned_cols=149 Identities=11% Similarity=0.080 Sum_probs=83.7
Q ss_pred cHHHHHHHHHHHHh-cCCCCC-HHHHHHHHHHHHh---------cCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhC
Q 038490 98 LLERALQMFDEMSS-FNVQMT-VKFFNTLLNPKLT---------CGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSR 166 (344)
Q Consensus 98 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (344)
..+.|+.+|.+... ..+.|+ ...|..+..++.. ..+..+|.+.-++..+.++.|..+...+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 45678888888872 122343 4455544444332 123455666666667766677777777777777777
Q ss_pred ChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 038490 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246 (344)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 246 (344)
+++.|..+|++....+.. ...+|......+.-.|+.++|.+.+++.++.........+....+..|+.. .++.|..++
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 788888888877765322 233333333445557777777777777665432222223333333344333 345555555
Q ss_pred HH
Q 038490 247 EE 248 (344)
Q Consensus 247 ~~ 248 (344)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 33
No 245
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=96.26 E-value=0.28 Score=35.78 Aligned_cols=136 Identities=14% Similarity=0.189 Sum_probs=85.9
Q ss_pred HHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038490 172 WKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251 (344)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 251 (344)
.+++..+.+.+++|+...+..++..+.+.|++.....+++. ++-+|.......+-.+. +....+.++--+|.+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 45566667788899999999999999999987776665543 55566555444443222 233444444444443
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 038490 252 DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322 (344)
Q Consensus 252 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 322 (344)
. -...+..++..+...|++-+|.++.+..... +......++.+-.+.+|..--..+++-..++
T Consensus 87 R----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 87 R----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred H----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 0113566778888999999998888775332 2233355667777777766666666555543
No 246
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.22 E-value=0.022 Score=31.05 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=9.5
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhh
Q 038490 52 LIITKLGRAKMFDEMQQILHQLKH 75 (344)
Q Consensus 52 ~l~~~~~~~~~~~~a~~~~~~~~~ 75 (344)
.+...|.+.|++++|+++|++..+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333334444444444444444333
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.22 E-value=0.69 Score=39.79 Aligned_cols=149 Identities=13% Similarity=0.079 Sum_probs=73.6
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCC
Q 038490 89 VIGFYGRARLLERALQMFDEMSSFNVQMT-VKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRR 167 (344)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (344)
+|.-..+..+.+.-++.-.+.++.. |+ ...|..|.. -......++.+++++..+.+.... .+...
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~--pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~l----------g~s~~ 239 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEIN--PDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASL----------GKSQF 239 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhh--hhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhh----------chhhh
Confidence 4444445566666666666555542 32 223332222 223456777777777654322100 00000
Q ss_pred hhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 038490 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247 (344)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 247 (344)
.+..-..++....+...|-...-..+..++.+.|+.++|++.++++++.........+...|+.++...+.+.++..++.
T Consensus 240 ~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 240 LQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00000111112222222223333344555566777777777777777654322234456677777777777777777777
Q ss_pred HHHH
Q 038490 248 EMVR 251 (344)
Q Consensus 248 ~~~~ 251 (344)
+..+
T Consensus 320 kYdD 323 (539)
T PF04184_consen 320 KYDD 323 (539)
T ss_pred Hhcc
Confidence 7644
No 248
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.18 E-value=0.065 Score=42.11 Aligned_cols=127 Identities=19% Similarity=0.124 Sum_probs=86.4
Q ss_pred CcCHhhHHHHHHHHHhh-----chHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----------------ChHHH
Q 038490 184 QPTLVTFGTLIYGLCLE-----LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG----------------ELSLA 242 (344)
Q Consensus 184 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a 242 (344)
.-|..+|...+..+... +.++-....++. ++++|+.-|..+|+.|+..+-+.. +-+-+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~-m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~ 142 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKY-MKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCA 142 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHH-HHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHH
Confidence 44777787777766543 445555555555 567899999999999999986643 23457
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCc-CcHHHHHHHHHH---cCCCCChhhHHHHHHHHhccCC-HHHHHHHHH
Q 038490 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRK-NEFPAILKEMKE---RGCKPNSVTYNALISGFCKEED-FEAAFTILD 317 (344)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~ 317 (344)
++++++|...|+.||-.+-..|+++|.+.+-. .+..++.-.|.+ .+.-|+.... -|+ .+-|.-.++
T Consensus 143 I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPkfkn~np~p~pr~v---------p~dp~ElA~~aL~ 213 (406)
T KOG3941|consen 143 IKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPKFKNSNPYPDPRHV---------PGDPSELAGIALK 213 (406)
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhhhccCCCCCCCCCC---------CCCHHHHHHHHHH
Confidence 89999999999999999999999999887753 244444444433 2333443321 233 445555666
Q ss_pred HHh
Q 038490 318 EMG 320 (344)
Q Consensus 318 ~~~ 320 (344)
.|.
T Consensus 214 ~M~ 216 (406)
T KOG3941|consen 214 MMS 216 (406)
T ss_pred HhC
Confidence 664
No 249
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.14 E-value=0.15 Score=35.03 Aligned_cols=53 Identities=15% Similarity=0.019 Sum_probs=24.1
Q ss_pred HHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 038490 57 LGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111 (344)
Q Consensus 57 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 111 (344)
+...|+++.|++.|.+.... .+.....||.-..++.-+|+.++|+.-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34444455555544444432 223344444444444444444444444444443
No 250
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=96.14 E-value=0.77 Score=39.59 Aligned_cols=183 Identities=11% Similarity=0.088 Sum_probs=134.3
Q ss_pred CCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHH
Q 038490 80 VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILI 159 (344)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 159 (344)
..|...+.+++..+++...+.-++.+..+|...| .+...+..++++|... .-+.-..+++++.+....+...-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 5567778889999999999999999999999875 5667788999999988 556778888888776666666666677
Q ss_pred HHHHhhCChhHHHHHHHHHhhCCCCc-----CHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038490 160 HGCVVSRRLEDAWKVFDEMVKRRLQP-----TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234 (344)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 234 (344)
..|-+ ++...+...|.++..+-++- -...|..+.. .-..+.+....+...+....|...-...+..+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 76666 88888888888887652220 1123443332 1245777788888887776676666777777778888
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038490 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269 (344)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 269 (344)
...++.+|++++..+.+.+-+ |...-..++..+.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~lR 250 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEK-DVWARKEIIENLR 250 (711)
T ss_pred cccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHHH
Confidence 999999999999988877544 6655555555443
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.10 E-value=0.058 Score=37.01 Aligned_cols=95 Identities=15% Similarity=-0.042 Sum_probs=73.8
Q ss_pred hhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch--hH
Q 038490 8 LACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE--II 85 (344)
Q Consensus 8 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~ 85 (344)
-+.+++..|+.+.|++.|.+.. .-.+....+||.-..++.-.|+.++|++-+++..+-.|-+... ..
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal-----------~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa 117 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQAL-----------CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQA 117 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHH-----------HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHH
Confidence 3556788999999999998863 2234478899999999999999999999999988765433111 23
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC
Q 038490 86 FCNVIGFYGRARLLERALQMFDEMSSFN 113 (344)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 113 (344)
|..-...|...|+.+.|..-|+..-+.|
T Consensus 118 ~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 118 FVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 3344556778899999999999988877
No 252
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=0.73 Score=42.14 Aligned_cols=180 Identities=14% Similarity=0.015 Sum_probs=107.9
Q ss_pred chhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch
Q 038490 4 SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE 83 (344)
Q Consensus 4 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 83 (344)
+...-+.++.+..-++.|+.+-+.-...+. .-........+.+.+.|++++|...|-+-... +.|..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d-----------~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s~ 402 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDED-----------TLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPSE 402 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHH-----------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChHH
Confidence 334455666777777888888766532211 02223334445566788999988888776542 34432
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038490 84 IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCV 163 (344)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (344)
+|.-|.+..+...-..+++.+.+.| -.+...-..|+.+|.+.++.++-.++.+.... |. -..-....+..+.
T Consensus 403 -----Vi~kfLdaq~IknLt~YLe~L~~~g-la~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~-~~fd~e~al~Ilr 474 (933)
T KOG2114|consen 403 -----VIKKFLDAQRIKNLTSYLEALHKKG-LANSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GE-WFFDVETALEILR 474 (933)
T ss_pred -----HHHHhcCHHHHHHHHHHHHHHHHcc-cccchhHHHHHHHHHHhcchHHHHHHHhcCCC-cc-eeeeHHHHHHHHH
Confidence 5666677778888888888888888 45556667888899998888887777666542 11 1112345556666
Q ss_pred hhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHH
Q 038490 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212 (344)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 212 (344)
+.+-.++|..+-.+... ....... .+-..+++++|++.+..
T Consensus 475 ~snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 475 KSNYLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISS 515 (933)
T ss_pred HhChHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhc
Confidence 66666666555444322 1112222 23445666666666644
No 253
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.95 E-value=0.58 Score=36.54 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=30.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 230 IKGLCAVGELSLALGVKEEMVRDKIE--MDAGIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 230 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
.+.|.+.|.+..|..-++.|.+.-.. -....+-.+..+|...|-.++|...-+-+...
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 44556666666666666666654111 11223444555666666666665555544443
No 254
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.84 E-value=0.025 Score=30.88 Aligned_cols=27 Identities=11% Similarity=0.178 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc
Q 038490 86 FCNVIGFYGRARLLERALQMFDEMSSF 112 (344)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 112 (344)
+..+...|.+.|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444555555555555555555544
No 255
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.80 E-value=0.97 Score=37.99 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCcCcHHHHHHHHHH
Q 038490 222 DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM---DAGIYSSLISALFKAGRKNEFPAILKEMKE 286 (344)
Q Consensus 222 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 286 (344)
...++..++..+.+.|+++.|...+..+...+... .+.+...-+...-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666677777777777777777766543211 233344445555666666777777666665
No 256
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.76 E-value=0.45 Score=33.85 Aligned_cols=43 Identities=14% Similarity=0.271 Sum_probs=23.3
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038490 88 NVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131 (344)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 131 (344)
.++..+.+.+.......+++.+...+ ..+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34555555555566666666555554 34455555555555543
No 257
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.76 E-value=0.4 Score=39.34 Aligned_cols=234 Identities=12% Similarity=0.039 Sum_probs=141.0
Q ss_pred hhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhh----hcCCCCCchh
Q 038490 9 ACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK----HDTRIVPKEI 84 (344)
Q Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~ 84 (344)
+..+..+.+.++|+..+.+.....+ ..--...+|..+..+.++.|.+++++..--..+ +......--.
T Consensus 13 g~~Ly~s~~~~~al~~w~~~L~~l~--------~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 13 GLQLYQSNQTEKALQVWTKVLEKLS--------DLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred HHhHhcCchHHHHHHHHHHHHHHHH--------HHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788888888766533321 111134567777788888888887765432211 1100011123
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC------CCccc
Q 038490 85 IFCNVIGFYGRARLLERALQMFDEMSSF-NVQM---TVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS------PDACS 154 (344)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~ 154 (344)
.|..+.+.+.+.-++.+++.+-..-... |..| .-....++..++...+.++++++.|+...+... .....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4556666666666777777666554432 1111 112344566777777889999999987654322 34567
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHhhC----CCCcCHhhHHH-----HHHHHHhhchHHHHHHHHHHHHHhcCCCCCH--
Q 038490 155 YNILIHGCVVSRRLEDAWKVFDEMVKR----RLQPTLVTFGT-----LIYGLCLELRVDEALKLKEDIMRVYNVKPDG-- 223 (344)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 223 (344)
+-.|-..|.+..|+++|.-+..+..+. ++.--..-|.. +.-++...|+...|.+.-++.++..-..-|.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 888999999999999988776665432 22211112222 2345667788888887777765543223333
Q ss_pred --HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038490 224 --QVFASLIKGLCAVGELSLALGVKEEMV 250 (344)
Q Consensus 224 --~~~~~l~~~~~~~~~~~~a~~~~~~~~ 250 (344)
.....+.+.|...|+.+.|+.-|++..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 344566777888999999988877754
No 258
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.76 E-value=0.18 Score=40.12 Aligned_cols=77 Identities=18% Similarity=0.225 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHH-----cCCCCChhhHHHH
Q 038490 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE-----RGCKPNSVTYNAL 299 (344)
Q Consensus 225 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~l 299 (344)
++..++..+...|+.+.+...++++....+. +...|..++.+|.+.|+...|++.|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 5566777777788888888888888877644 778888888888888888888888877654 4777777776666
Q ss_pred HHH
Q 038490 300 ISG 302 (344)
Q Consensus 300 ~~~ 302 (344)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 555
No 259
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.51 Score=43.06 Aligned_cols=176 Identities=11% Similarity=0.105 Sum_probs=117.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHH----HHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 50 YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNV----IGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125 (344)
Q Consensus 50 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (344)
...-+..+.+...++-|..+.+.-. .+..+...+ .+.+.+.|++++|...|-+.+..- .| ..++
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi 404 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVI 404 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHH
Confidence 4556777788888888888765532 233333333 444567899999999887766431 33 2345
Q ss_pred HHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHH
Q 038490 126 NPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205 (344)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (344)
.-|........-..+++.+.+.+..+...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 555666667777788888888888888888999999999999999887777654 3322 1123456677777888888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038490 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249 (344)
Q Consensus 206 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 249 (344)
|..+-... ..+......++ -..+++++|++.+..+
T Consensus 482 a~~LA~k~------~~he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKF------KKHEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHh------ccCHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 87766542 12333444443 3667888888877654
No 260
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.75 E-value=0.4 Score=33.16 Aligned_cols=139 Identities=10% Similarity=0.115 Sum_probs=73.5
Q ss_pred hcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHH
Q 038490 95 RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKV 174 (344)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 174 (344)
-.|.+++..++..+.... .+..-+|-+|--....-+-+...++++.+-.. -|.. ..|++......
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki--FDis----------~C~NlKrVi~C 78 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI--FDIS----------KCGNLKRVIEC 78 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG--S-GG----------G-S-THHHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh--cCch----------hhcchHHHHHH
Confidence 356667777777776653 34444555554444444445555555554332 2222 22333333333
Q ss_pred HHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 038490 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254 (344)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 254 (344)
+-.+ .-+...+...+......|+-++-.+++..+++ .-.+++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 79 ~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 79 YAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3222 11334455566777778888888888877664 2356777777788888888888888888888887776
Q ss_pred C
Q 038490 255 E 255 (344)
Q Consensus 255 ~ 255 (344)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
No 261
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.55 E-value=0.18 Score=44.50 Aligned_cols=85 Identities=14% Similarity=0.112 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHh----------
Q 038490 119 KFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV---------- 188 (344)
Q Consensus 119 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------- 188 (344)
.+...+..-+.+...+..|.++|.+|-+ ...++......++|++|..+-+...+. .||+.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 3444444555556667777777776643 344566677778888888777765443 33332
Q ss_pred -hHHHHHHHHHhhchHHHHHHHHHHH
Q 038490 189 -TFGTLIYGLCLELRVDEALKLKEDI 213 (344)
Q Consensus 189 -~~~~l~~~~~~~~~~~~a~~~~~~~ 213 (344)
-|...-.+|.+.|+-.+|.++++++
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 1222335666667777777777664
No 262
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.51 E-value=0.21 Score=39.79 Aligned_cols=59 Identities=19% Similarity=0.345 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHh
Q 038490 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179 (344)
Q Consensus 121 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (344)
+..++..+...|+.+.+...++++....+-+...|..+|.+|.+.|+...|+..|+++.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 33344444455555555555555555555555555555555555555555555555543
No 263
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.49 E-value=0.86 Score=35.20 Aligned_cols=224 Identities=16% Similarity=0.073 Sum_probs=117.4
Q ss_pred CCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 038490 61 KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF-NVQMTVKFFNTLLNPKLTCGKLDRMKE 139 (344)
Q Consensus 61 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 139 (344)
+....+...+...............+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555443100012455566666666777777777777666542 223444555566666666666777777
Q ss_pred HHHHHhccCCCCcccHHHHHH-HHHhhCChhHHHHHHHHHhhCCC--CcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 038490 140 LFQIMEKYVSPDACSYNILIH-GCVVSRRLEDAWKVFDEMVKRRL--QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216 (344)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 216 (344)
.+.........+......... .+...|+++.+...+.+...... ......+......+...++.+.+...+......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 777666544433233333333 56677777777777777644211 012222222333344556666666666665543
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 217 YNVKP-DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 217 ~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
. .. ....+..+...+...++++.+...+......... ....+..+...+...+..+++...+......
T Consensus 197 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 197 N--PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred C--cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 22 2455555555666666666666666666654322 1233333333333445555555555555544
No 264
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=0.92 Score=35.17 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=24.3
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhh
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKH 75 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 75 (344)
-...|.--..+|....++++|...+.+..+
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 455677778888889999999998888765
No 265
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.40 E-value=0.63 Score=33.09 Aligned_cols=45 Identities=9% Similarity=0.213 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhc
Q 038490 50 YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRA 96 (344)
Q Consensus 50 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 96 (344)
...++..+.+.+........++.+...+ ..+...++.++..|++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHH
Confidence 3445566665666666666666665542 24445556666666544
No 266
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.24 E-value=1.7 Score=37.06 Aligned_cols=144 Identities=13% Similarity=0.132 Sum_probs=103.7
Q ss_pred HhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 038490 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY-SSLI 265 (344)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~ 265 (344)
...|...+....+..-.+.|..+|-++.+..-+.+++.++++++..++ .|+..-|.++|+--...- ||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHH
Confidence 445666777777888899999999996554336778889999998765 578888999998776652 344444 5567
Q ss_pred HHHHHcCCcCcHHHHHHHHHHcCCCCC--hhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 038490 266 SALFKAGRKNEFPAILKEMKERGCKPN--SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336 (344)
Q Consensus 266 ~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 336 (344)
..+...++-+.|..+|+....+ +.-+ ...|..+|.--..-|+...+..+=+.|... .|...+...+..
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~S 543 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTS 543 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHH
Confidence 7788899999999999965443 1112 467889998888899998888887777653 344444433333
No 267
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.18 E-value=1.8 Score=36.95 Aligned_cols=258 Identities=11% Similarity=0.131 Sum_probs=143.9
Q ss_pred HHHhcCCchHHHHHHHHhhhcCCCCCchhH------HHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--
Q 038490 56 KLGRAKMFDEMQQILHQLKHDTRIVPKEII------FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP-- 127 (344)
Q Consensus 56 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-- 127 (344)
.+.+.+++++|..+|.++.+.. ..++.. -+.++++|. .++.+........+.+.. | ...|..+..+
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~ 88 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF--G-KSAYLPLFKALV 88 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc--C-CchHHHHHHHHH
Confidence 4567899999999999987752 333222 234667765 455666666666666542 2 2234444433
Q ss_pred HHhcCChHHHHHHHHHHhccCCC------Ccc---------cHHHHHHHHHhhCChhHHHHHHHHHhhC----CCCcCHh
Q 038490 128 KLTCGKLDRMKELFQIMEKYVSP------DAC---------SYNILIHGCVVSRRLEDAWKVFDEMVKR----RLQPTLV 188 (344)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~~~~------~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ 188 (344)
+.+.+++++|.+.+......... +.. .-+..+.++...|++.++..+++++... ...-+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 35678899999988776554221 111 1156677888999999999999988764 3335777
Q ss_pred hHHHHHHHHHhhc---------------hHHHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHHHhcC--ChHHHHHHH
Q 038490 189 TFGTLIYGLCLEL---------------RVDEALKLKEDIMRV-----YNVKPDGQVFASLIKGLCAVG--ELSLALGVK 246 (344)
Q Consensus 189 ~~~~l~~~~~~~~---------------~~~~a~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~ 246 (344)
+|+.++-.+.++= -++.+.-..+++... ..+.|.......+++...-.. +..--.+++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 8877554444321 112222222221111 123444444555554443222 222233344
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCC----ChhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 038490 247 EEMVRDKIEMDAG-IYSSLISALFKAGRKNEFPAILKEMKERGCKP----NSVTYNALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 247 ~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
+.-...-+.|+-. +...+...+.. +.+++..+.+.+....+.+ -..+|..++....+.++...|.+.+.-+.-
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 4444444445432 23344444444 4556655555544332111 235677888888888998888888876654
No 268
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.16 E-value=1.1 Score=34.69 Aligned_cols=206 Identities=13% Similarity=0.083 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038490 84 IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCV 163 (344)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (344)
..|.....+|...+++++|...+.+..+.. +.+...|. .. ..++.|.-+.+++.... .-...|+--...|.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslfh-AA------KayEqaamLake~~kls-Evvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFH-AA------KAYEQAAMLAKELSKLS-EVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHH-HH------HHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHH
Confidence 455566677777888888887776665321 22221111 11 12233333333333210 11223444455666
Q ss_pred hhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCCh
Q 038490 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN----VKPDGQVFASLIKGLCAVGEL 239 (344)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~ 239 (344)
.+|..+.|-..+++.-+. ..+-++++|+++|++...... ...-...+...-..+.+...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 666666665555554321 112223333333333221100 000111222333344444555
Q ss_pred HHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCCcCcHHHHHHHHHHc---CCCCChhhHHHHHHHHhccCCHHH
Q 038490 240 SLALGVKEEMVRD----KIEMDA-GIYSSLISALFKAGRKNEFPAILKEMKER---GCKPNSVTYNALISGFCKEEDFEA 311 (344)
Q Consensus 240 ~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~ 311 (344)
.+|-..+.+-... .--++. ..|-..|-.+....++..|...++.--.. .-.-+..+...|+.+| ..||.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 5444333222110 001111 22444455555566777777777663322 1122445566666665 3456665
Q ss_pred HHHH
Q 038490 312 AFTI 315 (344)
Q Consensus 312 a~~~ 315 (344)
+..+
T Consensus 246 ~~kv 249 (308)
T KOG1585|consen 246 IKKV 249 (308)
T ss_pred HHHH
Confidence 5544
No 269
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.03 E-value=0.75 Score=31.88 Aligned_cols=62 Identities=23% Similarity=0.309 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCC
Q 038490 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324 (344)
Q Consensus 262 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 324 (344)
...+......|.-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++..++.+..+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444455555555555555554431 234445555555555555555555555555555554
No 270
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.01 E-value=0.001 Score=47.70 Aligned_cols=135 Identities=10% Similarity=0.144 Sum_probs=78.8
Q ss_pred CCCchhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCC
Q 038490 1 KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80 (344)
Q Consensus 1 ~p~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 80 (344)
+|.....++..+.+.+.+..+..+++.+.... ...+....+.++..|++.+..++..++++... .
T Consensus 6 ~~~~~~~vi~~~~~~~~~~~l~~yLe~~~~~~----------~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~-- 70 (143)
T PF00637_consen 6 DPLEISEVISAFEERNQPEELIEYLEALVKEN----------KENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---N-- 70 (143)
T ss_dssp TTSCSCCCHHHCTTTT-GGGCTCCHHHHHHTS----------TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---S--
T ss_pred CccCHHHHHHHHHhCCCHHHHHHHHHHHHhcc----------cccCHHHHHHHHHHHHhcCCchHHHHHccccc---c--
Confidence 35666778888888888888888888874322 12367778888888888887788777766221 1
Q ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHH
Q 038490 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIH 160 (344)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 160 (344)
.-...++..|.+.+.++++.-++.++-... ..+..+...++++.|.+.+... .+...|..++.
T Consensus 71 ---yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~~-----~~~~l~~~l~~ 133 (143)
T PF00637_consen 71 ---YDLDKALRLCEKHGLYEEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKKV-----DDPELWEQLLK 133 (143)
T ss_dssp ---S-CTHHHHHHHTTTSHHHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGGC-----SSSHHHHHHHH
T ss_pred ---cCHHHHHHHHHhcchHHHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHhc-----CcHHHHHHHHH
Confidence 222346677777777777777766544321 1111122334444444222222 44566666666
Q ss_pred HHHhhCC
Q 038490 161 GCVVSRR 167 (344)
Q Consensus 161 ~~~~~~~ 167 (344)
.+...+.
T Consensus 134 ~~l~~~~ 140 (143)
T PF00637_consen 134 YCLDSKP 140 (143)
T ss_dssp HHCTSTC
T ss_pred HHHhcCc
Confidence 6655443
No 271
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.00 E-value=1.3 Score=34.62 Aligned_cols=182 Identities=11% Similarity=0.001 Sum_probs=89.4
Q ss_pred HHHHHHhcCCchHHHHHHHHhhhcCCCCC-chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038490 53 IITKLGRAKMFDEMQQILHQLKHDTRIVP-KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131 (344)
Q Consensus 53 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 131 (344)
-+..-.+.|++++|.+.|+.+.......| ...+.-.++-++.+.++++.|+...++..+....-...-|...|.+++..
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~ 119 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYF 119 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Confidence 33444566777777777777765432111 22344445566666777777777777766543221222244444433321
Q ss_pred -------CChHHHHHHH---HHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhc
Q 038490 132 -------GKLDRMKELF---QIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201 (344)
Q Consensus 132 -------~~~~~a~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 201 (344)
.|...+...+ +.+.+..|.+.. ...|...+..+... =...=..+.+-|.+.|
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y--------------a~dA~~~i~~~~d~----LA~~Em~IaryY~kr~ 181 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRYPNSRY--------------APDAKARIVKLNDA----LAGHEMAIARYYLKRG 181 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHCCCCcc--------------hhhHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 2222222222 222222211111 11111111111110 0000113446677888
Q ss_pred hHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038490 202 RVDEALKLKEDIMRVYNVKP-DGQVFASLIKGLCAVGELSLALGVKEEMVRD 252 (344)
Q Consensus 202 ~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (344)
.+..|..-++++++...-.+ ....+-.+..+|...|-.++|.+.-.-+...
T Consensus 182 ~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 182 AYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred ChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 88888888888877532222 1334566677788888888887776666554
No 272
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.94 E-value=0.41 Score=45.38 Aligned_cols=178 Identities=17% Similarity=0.219 Sum_probs=101.5
Q ss_pred cccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchh--hHHHHHHHHHhcC--CchHHHHHHHHhh--hcC--CCCCchh
Q 038490 13 RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLL--HYDLIITKLGRAK--MFDEMQQILHQLK--HDT--RIVPKEI 84 (344)
Q Consensus 13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~--~~~~a~~~~~~~~--~~~--~~~~~~~ 84 (344)
..+.|+.+=+-+++++...... .+.++-|.. -|...+..+...| -++++..+.++-. ... -+.|+..
T Consensus 862 ~SqkDPkEyLP~L~el~~m~~~-----~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e 936 (1265)
T KOG1920|consen 862 KSQKDPKEYLPFLNELKKMETL-----LRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSE 936 (1265)
T ss_pred HhccChHHHHHHHHHHhhchhh-----hhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHH
Confidence 3466777777777776432211 222332322 2444555555555 4666666554311 000 1356666
Q ss_pred HHHHHHHHH----HhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHH
Q 038490 85 IFCNVIGFY----GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIH 160 (344)
Q Consensus 85 ~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 160 (344)
.+..+..+| .+...+++|.-+|+..-+ ....+.+|..+|+|++|+.+..++......-..+-..|+.
T Consensus 937 ~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s 1007 (1265)
T KOG1920|consen 937 KQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVS 1007 (1265)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 655555444 456677777777765433 2345677788888888888887775421111122256777
Q ss_pred HHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHH
Q 038490 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212 (344)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 212 (344)
-+...++.-+|-++..+.... ..-.+..+++...+++|..+...
T Consensus 1008 ~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1008 RLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 788888888888888776654 12233455666677777666544
No 273
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.89 E-value=1.7 Score=35.40 Aligned_cols=129 Identities=9% Similarity=0.155 Sum_probs=60.0
Q ss_pred hHHHHHHHHHhhCCCCcCHhhHHHHHHHHHh--h----chHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCC--
Q 038490 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL--E----LRVDEALKLKEDIMRVYNVK--PDGQVFASLIKGLCAVGE-- 238 (344)
Q Consensus 169 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~-- 238 (344)
++.+.+++.|.+.|.+-+..+|.+....... . ....++..+|+.|.+.+.+- ++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445566666666666666555443322221 1 23455666666655544332 233344444332 2222
Q ss_pred --hHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCC--cCcHHHHHHHHHHcCCCCChhhHHHH
Q 038490 239 --LSLALGVKEEMVRDKIEMDA--GIYSSLISALFKAGR--KNEFPAILKEMKERGCKPNSVTYNAL 299 (344)
Q Consensus 239 --~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l 299 (344)
.+.++.+|+.+.+.|+..+- .....++..+..... ...+.++++.+.+.|+++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 23455556666665554322 222222222222111 23556666666666666655555444
No 274
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.83 E-value=1 Score=33.55 Aligned_cols=63 Identities=11% Similarity=0.250 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 038490 84 IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT--VKFFNTLLNPKLTCGKLDRMKELFQIMEK 146 (344)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 146 (344)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+++.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566677777778888888888877776543332 34566667777777777777776666554
No 275
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.57 E-value=3.1 Score=36.79 Aligned_cols=92 Identities=8% Similarity=0.130 Sum_probs=61.7
Q ss_pred hhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHH-hcCCchHHHHHHHHhhhcCCCC-CchhHH
Q 038490 9 ACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLG-RAKMFDEMQQILHQLKHDTRIV-PKEIIF 86 (344)
Q Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 86 (344)
+..=.+.|..+.+..+|++. +.+++.++..|......+. ..|+.+...+.|+......|.. -+...|
T Consensus 86 A~~E~klg~~~~s~~Vferg-----------v~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lW 154 (577)
T KOG1258|consen 86 ADYEYKLGNAENSVKVFERG-----------VQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLW 154 (577)
T ss_pred HHHHHHhhhHHHHHHHHHHH-----------HHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHH
Confidence 33344567788888888886 4456667777766665444 4567777888888877654433 234556
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHh
Q 038490 87 CNVIGFYGRARLLERALQMFDEMSS 111 (344)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~ 111 (344)
...|..-..++++.....+|+++++
T Consensus 155 dkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 155 DKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHh
Confidence 6677766777778888777777764
No 276
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.46 E-value=0.79 Score=34.14 Aligned_cols=96 Identities=10% Similarity=-0.023 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccCC---CCcccHHHHHHHHHhhCChhHHHHHHHHHhhC---CCCcCHhhHHH
Q 038490 119 KFFNTLLNPKLTCGKLDRMKELFQIMEKYVS---PDACSYNILIHGCVVSRRLEDAWKVFDEMVKR---RLQPTLVTFGT 192 (344)
Q Consensus 119 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 192 (344)
..+..+...|.+.|+.+.|.+.+.++.+... .-...+-.+++.....+++..+...+.+.... |...+...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3567788888888888888888888877544 22344566777778888888888887776543 22222211111
Q ss_pred HHH--HHHhhchHHHHHHHHHHHH
Q 038490 193 LIY--GLCLELRVDEALKLKEDIM 214 (344)
Q Consensus 193 l~~--~~~~~~~~~~a~~~~~~~~ 214 (344)
+.. .+...+++..|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 2234567777777775543
No 277
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.45 E-value=2.4 Score=35.06 Aligned_cols=170 Identities=11% Similarity=-0.001 Sum_probs=110.6
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch---hHHHHHHHHHHhcccHHHHHHHHHHHHhcC-----CCCCH
Q 038490 47 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE---IIFCNVIGFYGRARLLERALQMFDEMSSFN-----VQMTV 118 (344)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~ 118 (344)
..+|..+.+++-+.-++.+++.+-..-....|..|.. .....+..++...+.++++++.|+...+.. .-...
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 4456666666666677777777666655444444421 233446677888889999999999887531 11234
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcc----CCCCcc-cH-----HHHHHHHHhhCChhHHHHHHHHHhh----CCCC
Q 038490 119 KFFNTLLNPKLTCGKLDRMKELFQIMEKY----VSPDAC-SY-----NILIHGCVVSRRLEDAWKVFDEMVK----RRLQ 184 (344)
Q Consensus 119 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~-----~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~ 184 (344)
.+|..|-..|.+..|+++|.-+..+..+. +..+.. .| .-|.-++...|.+..|.+.-++..+ .|-+
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 67899999999999999988766554332 112211 12 2234466778888888888777644 3433
Q ss_pred cC-HhhHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 038490 185 PT-LVTFGTLIYGLCLELRVDEALKLKEDIMRV 216 (344)
Q Consensus 185 ~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 216 (344)
+. ......+.+.|...|+.+.|+.-|++.+..
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 21 223445667888899999999999887643
No 278
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.34 E-value=1.7 Score=34.77 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc-CCCCChhhHHHHHHHHhccCCHHHHHHHHH
Q 038490 256 MDAGIYSSLISALFKAGRKNEFPAILKEMKER-GCKPNSVTYNALISGFCKEEDFEAAFTILD 317 (344)
Q Consensus 256 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 317 (344)
++..+...++..+++.+++.+-.++++..... +..-|...|..+|......|+..-...+.+
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 34444555555555555555555555544333 333355555555555555555544444443
No 279
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.26 E-value=0.052 Score=38.85 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=26.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHH
Q 038490 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK 282 (344)
Q Consensus 230 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 282 (344)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444455555555555555554434445555555555555555555555554
No 280
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.20 E-value=2 Score=33.09 Aligned_cols=224 Identities=18% Similarity=0.119 Sum_probs=161.1
Q ss_pred cccHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhc--cCCCCcccHHHHHHHHHhhCChhHHH
Q 038490 96 ARLLERALQMFDEMSSFNVQ-MTVKFFNTLLNPKLTCGKLDRMKELFQIMEK--YVSPDACSYNILIHGCVVSRRLEDAW 172 (344)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~ 172 (344)
.+....+...+......... .....+......+...+++..+...+..... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666676777766655422 1356778888888999999999998888775 33466677777888888889999999
Q ss_pred HHHHHHhhCCCCcCHhhHHHHHH-HHHhhchHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038490 173 KVFDEMVKRRLQPTLVTFGTLIY-GLCLELRVDEALKLKEDIMRVYNV--KPDGQVFASLIKGLCAVGELSLALGVKEEM 249 (344)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 249 (344)
..+.........+ ......... .+...|+++.+...+.+... ... ......+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 9999988764443 222222333 68899999999999999754 221 123344444455567889999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 038490 250 VRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322 (344)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 322 (344)
...........+..+...+...++.+.+...+......... ....+..+...+...+..+.+...+.+..+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88643324677888888999999999999999998886322 2344445555555777799999988888764
No 281
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.18 E-value=1.9 Score=32.88 Aligned_cols=184 Identities=16% Similarity=0.057 Sum_probs=102.7
Q ss_pred HHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHH
Q 038490 93 YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAW 172 (344)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 172 (344)
|-..|-+.-|.--|....... |.-+.+||-|.--+...|+++.|.+.|+...+.++....+...-.-++.-.|++.-|.
T Consensus 75 YDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhH
Confidence 334455555555566555543 3346788888888888999999999999988776544333332233344568888888
Q ss_pred HHHHHHhhCCCC-cCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHH
Q 038490 173 KVFDEMVKRRLQ-PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS-LIKGLCAVGELSLALGVKEEMV 250 (344)
Q Consensus 173 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~ 250 (344)
+-+.+.-+.+.. |=...|..+. ...-++.+|..-+.+--+ ..|..-|.. ++..|. |++. ...+++++.
T Consensus 154 ~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yL--gkiS-~e~l~~~~~ 223 (297)
T COG4785 154 DDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYL--GKIS-EETLMERLK 223 (297)
T ss_pred HHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHH--hhcc-HHHHHHHHH
Confidence 777776655322 2222232222 234455555544433122 223233322 222222 2221 122233333
Q ss_pred HCCCC------CCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 251 RDKIE------MDAGIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 251 ~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
...-. .-..||.-|.+.+...|+.++|..+|+-....
T Consensus 224 a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 224 ADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 21110 12356777888888899999999999887775
No 282
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.18 E-value=3.4 Score=35.78 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 227 ASLIKGLCAVGELSLALGVKEEMVRDKIE-MDAGIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 227 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
..+..++-+.|+.++|.+.++++.+.... -+..+...|+.++...+.+.++..++.+..+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 45666677888888888888888765432 24456777888888888888888888887544
No 283
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.09 E-value=0.43 Score=30.84 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=25.6
Q ss_pred HHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHH
Q 038490 65 EMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS 110 (344)
Q Consensus 65 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 110 (344)
++++-++.+... ...|++.+..+.+++|.+.+++..|.++++...
T Consensus 25 e~rr~mN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGY-DLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444443 355666666666666666666666666666554
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.05 E-value=0.16 Score=26.21 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHH
Q 038490 86 FCNVIGFYGRARLLERALQMFDEM 109 (344)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~ 109 (344)
+..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555666666666666666553
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.03 E-value=0.12 Score=26.57 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=9.8
Q ss_pred HHHHHHHHhhCChhHHHHHHHH
Q 038490 156 NILIHGCVVSRRLEDAWKVFDE 177 (344)
Q Consensus 156 ~~l~~~~~~~~~~~~a~~~~~~ 177 (344)
..|...|.+.|++++|++++++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
No 286
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.99 E-value=1.7 Score=35.10 Aligned_cols=104 Identities=10% Similarity=0.068 Sum_probs=67.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC---CCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhh
Q 038490 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS---PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT 189 (344)
Q Consensus 113 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 189 (344)
|.+....+...++..-....+.+.+...+-+++.... ....+-.++++.+.+ -+.++++.++..=.+-|+-||.++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhh
Confidence 3344444455555555556677777777777665432 112222333444333 356678888877778888888888
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHhc
Q 038490 190 FGTLIYGLCLELRVDEALKLKEDIMRVY 217 (344)
Q Consensus 190 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 217 (344)
++.+|+.+.+.+++.+|.++...++.+.
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888888888877766553
No 287
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.89 E-value=0.65 Score=30.41 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=19.2
Q ss_pred HHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHH
Q 038490 66 MQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS 110 (344)
Q Consensus 66 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 110 (344)
..+-++.+... .+.|++.+..+.+++|.+.+++..|.++|+.+.
T Consensus 29 ~rrglN~l~~~-DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGY-DLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTS-SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334443333 244555555555555555555555555555444
No 288
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.84 E-value=5.7 Score=37.07 Aligned_cols=224 Identities=15% Similarity=0.015 Sum_probs=122.2
Q ss_pred hcccHHHHHHHHHHHHhcCCCCCH-------HHHHHHH-HHHHhcCChHHHHHHHHHHhccCC-----CCcccHHHHHHH
Q 038490 95 RARLLERALQMFDEMSSFNVQMTV-------KFFNTLL-NPKLTCGKLDRMKELFQIMEKYVS-----PDACSYNILIHG 161 (344)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~ 161 (344)
...++++|..+..++...-..|+. ..++.|- ......|+.+.|..+.+.....-+ .....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 467889999888888654212221 1334332 233456888999988887765433 455566777788
Q ss_pred HHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHH-----HHHHhhchH--HHHHHHHHHHHHhcC--CC---CCHHHHHHH
Q 038490 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI-----YGLCLELRV--DEALKLKEDIMRVYN--VK---PDGQVFASL 229 (344)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~--~~a~~~~~~~~~~~~--~~---~~~~~~~~l 229 (344)
..-.|++++|..+..+..+..-.-++..+..+. ..+...|+. .+....+...-.... .+ +-..++..+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 888999999999888776543333444443332 234455632 233333333222111 11 122345555
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhh-H---HHHHH-
Q 038490 230 IKGLCAVG-ELSLALGVKEEMVRDKIEMDAGI--YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVT-Y---NALIS- 301 (344)
Q Consensus 230 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~---~~l~~- 301 (344)
+.++.+.. ...++..-+..-......|-..- +..|+......|+.++|...++++......+.... | ...+.
T Consensus 587 l~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~ 666 (894)
T COG2909 587 LRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKL 666 (894)
T ss_pred HHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhH
Confidence 55555521 12222222222222222222222 23677888889999999999999877644432211 1 22222
Q ss_pred -HHhccCCHHHHHHHHHH
Q 038490 302 -GFCKEEDFEAAFTILDE 318 (344)
Q Consensus 302 -~~~~~~~~~~a~~~~~~ 318 (344)
.....|+.+.+.....+
T Consensus 667 ~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 667 ILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhcccCCHHHHHHHHHh
Confidence 23457888777776665
No 289
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.75 E-value=0.1 Score=26.54 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=9.4
Q ss_pred CHHHHHHHHHHHHhcCChHHH
Q 038490 117 TVKFFNTLLNPKLTCGKLDRM 137 (344)
Q Consensus 117 ~~~~~~~l~~~~~~~~~~~~a 137 (344)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444
No 290
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.64 E-value=0.84 Score=36.77 Aligned_cols=100 Identities=15% Similarity=0.123 Sum_probs=58.2
Q ss_pred CCcccHHHHHHHHHhhCChhHHHHHHHHHhhCC---CCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHH
Q 038490 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR---LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226 (344)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 226 (344)
....+...++..-....+++.++..+-++...- ..|.... ..+++. +..-+.++++.++..=+ .+|+-||..++
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irl-llky~pq~~i~~l~npI-qYGiF~dqf~~ 138 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRL-LLKYDPQKAIYTLVNPI-QYGIFPDQFTF 138 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHH-HHccChHHHHHHHhCcc-hhccccchhhH
Confidence 344455555555555666777777777665441 1122211 122322 22335556666666633 35777777777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC
Q 038490 227 ASLIKGLCAVGELSLALGVKEEMVRD 252 (344)
Q Consensus 227 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (344)
+.+++.+.+.+++.+|..+...|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777777776666543
No 291
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.42 E-value=8 Score=37.43 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=48.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccC
Q 038490 230 IKGLCAVGELSLALGVKEEMVRDKIEMDAG--IYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307 (344)
Q Consensus 230 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 307 (344)
+.+|..+|++.+|..+..++... -+.. +-..|+.-+...+++-+|-++..+.... ....+..+++..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHh
Confidence 45556666666666666555432 1222 2255677777888888888887776653 123445566667
Q ss_pred CHHHHHHHHHHHh
Q 038490 308 DFEAAFTILDEMG 320 (344)
Q Consensus 308 ~~~~a~~~~~~~~ 320 (344)
.|++|.++.....
T Consensus 1041 ~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1041 EWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHhcc
Confidence 7888887765544
No 292
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.32 E-value=2.8 Score=37.20 Aligned_cols=100 Identities=16% Similarity=0.117 Sum_probs=49.8
Q ss_pred HhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHH
Q 038490 129 LTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208 (344)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 208 (344)
.+.|+++.|.++..+. .+..-|..|.++..+.+++..|.+.|.+..+ |..|+-.+...|+.+....
T Consensus 648 l~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 3456666666655544 3455566666666666666666666655433 2234444444555444433
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038490 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEM 249 (344)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 249 (344)
+-....+. | ..+ ..| .+|...|+++++.+++..-
T Consensus 714 la~~~~~~-g-~~N-~AF----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 714 LASLAKKQ-G-KNN-LAF----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhh-c-ccc-hHH----HHHHHcCCHHHHHHHHHhc
Confidence 33332222 2 112 111 2344556666666655443
No 293
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.25 E-value=2.4 Score=31.06 Aligned_cols=135 Identities=10% Similarity=-0.043 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhccCC-CCcc-cHHHH-
Q 038490 83 EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV-KFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDAC-SYNIL- 158 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~l- 158 (344)
...|...++. ++.+..++|+.-|..+.+.|...-+ -............|+...|...|+++-...+ |... -..-|
T Consensus 59 gd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 3445444443 3566777777888777776643211 1222333445667777788888877755433 3222 11111
Q ss_pred -HHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcC
Q 038490 159 -IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN 218 (344)
Q Consensus 159 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 218 (344)
.-.+...|.++.....++.+...+-+.-...-..|.-+-.+.|++.+|.+.|..+....+
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ 198 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQ 198 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcccc
Confidence 123456777887777777766555444444445566666778888888888888766433
No 294
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.11 E-value=0.81 Score=29.66 Aligned_cols=50 Identities=8% Similarity=-0.003 Sum_probs=34.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 238 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
+.-++.+-++.+...+..|++.+..+.+++|.+.+++.-|.++|+-.+.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455666666666666777777777777777777777777777766643
No 295
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.09 E-value=0.1 Score=26.49 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=20.8
Q ss_pred HHHHhccCCCCcccHHHHHHHHHhhCChhHHH
Q 038490 141 FQIMEKYVSPDACSYNILIHGCVVSRRLEDAW 172 (344)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 172 (344)
|++..+..|.+..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444555666677777777777777777664
No 296
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.05 E-value=2.6 Score=30.89 Aligned_cols=136 Identities=15% Similarity=0.007 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCccc--HHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHh-hHHHH--
Q 038490 119 KFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACS--YNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLV-TFGTL-- 193 (344)
Q Consensus 119 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l-- 193 (344)
..|...++ +++.+..++|+.-|..+.+.+..+-.. ---........|+...|...|+++-.....|-.. -...|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444444 345667788888888887755422211 1222344567788888888888877664444332 11111
Q ss_pred HHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 038490 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256 (344)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 256 (344)
.-.+...|.+++.....+-+ ...+-+--...-..|.-+-.+.|++..|...|..+......|
T Consensus 139 a~lLvD~gsy~dV~srvepL-a~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPL-AGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHhccccHHHHHHHhhhc-cCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 12345678888887777763 222333333444566666678888888888888887654333
No 297
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.99 E-value=2.4 Score=30.21 Aligned_cols=51 Identities=4% Similarity=-0.038 Sum_probs=22.4
Q ss_pred cCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhC
Q 038490 131 CGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (344)
.++.+++..+++.+.-..|.....-..-...+...|+|++|.++|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 445555555555544433322222222223334455555555555555444
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.92 E-value=2.6 Score=30.50 Aligned_cols=111 Identities=18% Similarity=0.152 Sum_probs=59.9
Q ss_pred HHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcC
Q 038490 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275 (344)
Q Consensus 196 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 275 (344)
.-.+.++.+++..++..+.-...-.+...++... .+...|++.+|..+|+++.... |....-..|+..|....+-.
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCCh
Confidence 3456778888888888754332222233344433 3568889999999999887663 34444445555555443332
Q ss_pred cHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHH
Q 038490 276 EFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313 (344)
Q Consensus 276 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 313 (344)
.=...-+++.+.+..|+. ..++..+....+...|.
T Consensus 95 ~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 95 SWRRYADEVLESGADPDA---RALVRALLARADLEPAH 129 (160)
T ss_pred HHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchh
Confidence 333334445555433332 23444444444443333
No 299
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.74 E-value=2.9 Score=30.62 Aligned_cols=134 Identities=16% Similarity=0.224 Sum_probs=61.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCC
Q 038490 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL 183 (344)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 183 (344)
+..+.+.+.+++|+...+..+++.+.+.|++.....+++.-. .+|.......+-.+ .+....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V---i~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV---IPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc---cCCcHHHHHHHHHh--HccChHHHHHHHHHHHH--
Confidence 344455556666666666666776666666554444333211 13333322222111 12233333333333332
Q ss_pred CcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038490 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR 251 (344)
Q Consensus 184 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 251 (344)
=...+..++..+...|++-+|.++.+..... +......++++..+.+|...-..+++-..+
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0112344555566666666666666552111 111223445555555555544444444443
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.51 E-value=3 Score=30.19 Aligned_cols=51 Identities=14% Similarity=0.044 Sum_probs=21.8
Q ss_pred hcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 038490 95 RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK 146 (344)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 146 (344)
+.++.+++..+++.+.... |-....-..-...+...|+|.+|.++|+.+..
T Consensus 22 ~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 4445555555555554432 11111112222333445555555555555543
No 301
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.25 E-value=3.2 Score=35.73 Aligned_cols=120 Identities=8% Similarity=-0.001 Sum_probs=80.0
Q ss_pred HhcccHHHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHH
Q 038490 94 GRARLLERALQ-MFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAW 172 (344)
Q Consensus 94 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 172 (344)
...|+.-.|-+ ++..+....-.|+. .......+...|+++.+.+.+......-.....+..++++...+.|+++.|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~--i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVL--IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 35566665544 44444443223433 3333344567799999988887776654566778888899999999999999
Q ss_pred HHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 038490 173 KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRV 216 (344)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 216 (344)
..-+.|....+. ++...+......-..|-++++...|++++.-
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 998888877655 4444443333445667888888888887643
No 302
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.19 E-value=1.1 Score=34.17 Aligned_cols=56 Identities=11% Similarity=-0.048 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHH
Q 038490 52 LIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEM 109 (344)
Q Consensus 52 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 109 (344)
..++.+.+.+++++++...+.-.+. -+.+...-..++..++-.|++++|..-++..
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3444555555555555555544442 1223334444555555555555555444443
No 303
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.90 E-value=2.5 Score=27.83 Aligned_cols=45 Identities=11% Similarity=0.057 Sum_probs=22.0
Q ss_pred HHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 038490 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215 (344)
Q Consensus 171 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 215 (344)
..+-++.+....+.|++....+.+++|.+.+++..|+++++.+..
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555555555555433
No 304
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.87 E-value=0.092 Score=24.72 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=22.1
Q ss_pred CCchhhhhhhhcccCCchHHhhhhcC
Q 038490 2 PTSSIRLACLPRLQKDPKLALQLFKN 27 (344)
Q Consensus 2 p~~~~~l~~~~~~~~~~~~A~~~~~~ 27 (344)
|.....++..+...|++++|..++++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 45667889999999999999998864
No 305
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.75 E-value=3.6 Score=29.36 Aligned_cols=19 Identities=11% Similarity=0.258 Sum_probs=10.1
Q ss_pred HHhcCChHHHHHHHHHHhc
Q 038490 128 KLTCGKLDRMKELFQIMEK 146 (344)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~ 146 (344)
+...|+|++|.++|+.+.+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 3445555555555555544
No 306
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.72 E-value=9.9 Score=34.42 Aligned_cols=149 Identities=17% Similarity=0.037 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHhccCCCCcccHHHHH--HH-HHhhCChhHHHHHHHHHhh-------CCCCcCHhhHHHHHHHHHhhc--
Q 038490 134 LDRMKELFQIMEKYVSPDACSYNILI--HG-CVVSRRLEDAWKVFDEMVK-------RRLQPTLVTFGTLIYGLCLEL-- 201 (344)
Q Consensus 134 ~~~a~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-- 201 (344)
...|..+++.....+..........+ .+ +....+.+.|+.+|+.+.+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 34556666655554332222221111 12 3345566667766666655 33 2223333444444422
Q ss_pred ---hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HcCCcC
Q 038490 202 ---RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA-VGELSLALGVKEEMVRDKIEMDAGIYSSLISALF--KAGRKN 275 (344)
Q Consensus 202 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~ 275 (344)
+.+.|..++...... | .|+....-..+..... ..+...|.++|....+.|.. ....+..++.... -..+.+
T Consensus 305 ~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhc-C-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 455566666664432 2 2332222222111111 13456677777666666533 2221111111111 122445
Q ss_pred cHHHHHHHHHHcC
Q 038490 276 EFPAILKEMKERG 288 (344)
Q Consensus 276 ~a~~~~~~~~~~~ 288 (344)
.|...+.+..+.|
T Consensus 382 ~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHcc
Confidence 5666666666655
No 307
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.55 E-value=0.43 Score=23.92 Aligned_cols=27 Identities=7% Similarity=0.009 Sum_probs=13.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhh
Q 038490 49 HYDLIITKLGRAKMFDEMQQILHQLKH 75 (344)
Q Consensus 49 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 75 (344)
+|..+..++...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344455555555555555555555444
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.01 E-value=0.52 Score=23.50 Aligned_cols=27 Identities=4% Similarity=0.030 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhh
Q 038490 49 HYDLIITKLGRAKMFDEMQQILHQLKH 75 (344)
Q Consensus 49 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 75 (344)
.|..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555555555555555555544
No 309
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.96 E-value=4.1 Score=30.75 Aligned_cols=90 Identities=11% Similarity=0.013 Sum_probs=47.0
Q ss_pred HHhhchHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 038490 197 LCLELRVDEALKLKEDIMRVYNVKPD---GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273 (344)
Q Consensus 197 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 273 (344)
+.+.|++++|..-|..++......+. ...|..-..++.+.+.++.|+.-....++.++. .......-..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhh
Confidence 34566666666666665553211111 123444445556666666666666666555433 22222233345566666
Q ss_pred cCcHHHHHHHHHHc
Q 038490 274 KNEFPAILKEMKER 287 (344)
Q Consensus 274 ~~~a~~~~~~~~~~ 287 (344)
+++|+.-|..+.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666665
No 310
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.94 E-value=4.2 Score=30.72 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=9.7
Q ss_pred CCHHHHHHHHHHHHHcCCcCcH
Q 038490 256 MDAGIYSSLISALFKAGRKNEF 277 (344)
Q Consensus 256 ~~~~~~~~l~~~~~~~g~~~~a 277 (344)
+|+..+..|+..+.+.|+++.|
T Consensus 176 ~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 176 FNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444444444444433
No 311
>PRK09687 putative lyase; Provisional
Probab=90.72 E-value=7.9 Score=31.44 Aligned_cols=235 Identities=11% Similarity=0.033 Sum_probs=139.6
Q ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHhccCCCCcccHH
Q 038490 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL----DRMKELFQIMEKYVSPDACSYN 156 (344)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 156 (344)
++..+....+..+...|..+ +...+..+.. .++...-...+.++...|+. +++...+..+... .++...-.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~-D~d~~VR~ 109 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE-DKSACVRA 109 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-CCCHHHHH
Confidence 45566666666776666533 3333333443 34566666677777777763 4566666655221 14444444
Q ss_pred HHHHHHHhhCC-----hhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038490 157 ILIHGCVVSRR-----LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIK 231 (344)
Q Consensus 157 ~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 231 (344)
..+.++...+. ...+...+...... ++...-...+.++.+.++ ..++..+-.+++ .++..+-...+.
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~----d~~~~VR~~A~~ 181 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLK----DPNGDVRNWAAF 181 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc----CCCHHHHHHHHH
Confidence 45555544432 12334444333332 244444556667766665 456666666565 345555555666
Q ss_pred HHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHH
Q 038490 232 GLCAVG-ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310 (344)
Q Consensus 232 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 310 (344)
++.+.+ +.+.+...+..+.. .++..+-...+.++.+.|+ ..+...+-+..+.+ + .....+.++...|+.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 666553 24466666666664 3477777788888888887 45666666666542 2 234677888888885
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHhh
Q 038490 311 AAFTILDEMGDKGCKANPISYNVILGGLCK 340 (344)
Q Consensus 311 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 340 (344)
+|...+..+.+. .||..+-...+.+|.+
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 688888888864 3588877777777654
No 312
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.62 E-value=0.98 Score=22.56 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=9.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 038490 228 SLIKGLCAVGELSLALGVKEEMV 250 (344)
Q Consensus 228 ~l~~~~~~~~~~~~a~~~~~~~~ 250 (344)
.+..++...|++++|+..|++.+
T Consensus 6 ~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 6 NLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchHHHHHHHHHH
Confidence 33334444444444444444443
No 313
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.52 E-value=8.5 Score=31.51 Aligned_cols=128 Identities=13% Similarity=0.194 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHhccCC----CCcccHHHHHHHHHhhCCh
Q 038490 99 LERALQMFDEMSSFNVQMTVKFFNTLLNPKLT--CG----KLDRMKELFQIMEKYVS----PDACSYNILIHGCVVSRRL 168 (344)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~ 168 (344)
+++...+++.|.+.|+..+..+|-+..-.... .. ...+|..+++.|++..+ ++..++..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677788888888887777666553333333 12 25567788888887765 344444444443 33333
Q ss_pred ----hHHHHHHHHHhhCCCCcCHh--hHHHHHHHHHhhc--hHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038490 169 ----EDAWKVFDEMVKRRLQPTLV--TFGTLIYGLCLEL--RVDEALKLKEDIMRVYNVKPDGQVFASL 229 (344)
Q Consensus 169 ----~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l 229 (344)
+.++.+|+.+.+.|...+.. ..+.++..+.... ...++..+++. +++.++++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~-l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA-LKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH-HHHcCCccccccccHH
Confidence 45566666666655554332 2222222211111 13355555555 3444666655555443
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.34 E-value=0.86 Score=23.98 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHH
Q 038490 85 IFCNVIGFYGRARLLERALQMFDEMS 110 (344)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 110 (344)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555544
No 315
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.05 E-value=3.4 Score=36.64 Aligned_cols=131 Identities=15% Similarity=0.106 Sum_probs=93.1
Q ss_pred hhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchh
Q 038490 5 SIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI 84 (344)
Q Consensus 5 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 84 (344)
..+++..+..+|-.++|+++--.- | .-.....+.|+++.|.++..+.. +..
T Consensus 617 rt~va~Fle~~g~~e~AL~~s~D~-----------------d-----~rFelal~lgrl~iA~~la~e~~-------s~~ 667 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELSTDP-----------------D-----QRFELALKLGRLDIAFDLAVEAN-------SEV 667 (794)
T ss_pred hhhHHhHhhhccchHhhhhcCCCh-----------------h-----hhhhhhhhcCcHHHHHHHHHhhc-------chH
Confidence 345666667777777777654222 1 12345678899999998876653 455
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038490 85 IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVV 164 (344)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (344)
-|..|.++....+++..|.+.|..... |..|+-.+...|+-+....+-...++.+. .|.-..+|..
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-----~N~AF~~~~l 733 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-----NNLAFLAYFL 733 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-----cchHHHHHHH
Confidence 688999999999999999999987765 55677777888887766666666665443 3344566778
Q ss_pred hCChhHHHHHHHHH
Q 038490 165 SRRLEDAWKVFDEM 178 (344)
Q Consensus 165 ~~~~~~a~~~~~~~ 178 (344)
.|+++++.+++..-
T Consensus 734 ~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 734 SGDYEECLELLIST 747 (794)
T ss_pred cCCHHHHHHHHHhc
Confidence 89999999888654
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.88 E-value=1.1 Score=23.50 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 038490 225 VFASLIKGLCAVGELSLALGVKEEMV 250 (344)
Q Consensus 225 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 250 (344)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44455555555555555555555544
No 317
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.76 E-value=0.91 Score=24.67 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=14.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhC
Q 038490 299 LISGFCKEEDFEAAFTILDEMGDK 322 (344)
Q Consensus 299 l~~~~~~~~~~~~a~~~~~~~~~~ 322 (344)
+..+|...|+.+.|..++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666666544
No 318
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.59 E-value=7.5 Score=29.44 Aligned_cols=89 Identities=9% Similarity=-0.008 Sum_probs=61.1
Q ss_pred HHHhcccHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhC
Q 038490 92 FYGRARLLERALQMFDEMSSFNVQMTV-----KFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSR 166 (344)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (344)
-+...|++++|..-|...+..- ++.. ..|..-..++.+.+.++.|..-..+..+.++....+..--..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3457788888888888887654 3322 234444456777888888888777777665544444444456788888
Q ss_pred ChhHHHHHHHHHhhC
Q 038490 167 RLEDAWKVFDEMVKR 181 (344)
Q Consensus 167 ~~~~a~~~~~~~~~~ 181 (344)
.++.|+.-|.++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 888888888888776
No 319
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.53 E-value=16 Score=33.15 Aligned_cols=279 Identities=14% Similarity=0.091 Sum_probs=150.7
Q ss_pred chHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHH-----HhcCCchHHHHHHHHhhhc---CCCCCchhHHHHH
Q 038490 18 PKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKL-----GRAKMFDEMQQILHQLKHD---TRIVPKEIIFCNV 89 (344)
Q Consensus 18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l 89 (344)
...|.++++.....+ +...-..+..++ ....+.+.|..+|+...+. .-..-.+.....+
T Consensus 228 ~~~a~~~~~~~a~~g-------------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~l 294 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG-------------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGL 294 (552)
T ss_pred hhHHHHHHHHHHhhc-------------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHH
Confidence 456777777764444 333333333333 3457889999999888661 0001133345556
Q ss_pred HHHHHhc----c-cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038490 90 IGFYGRA----R-LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT-CGKLDRMKELFQIMEKYVSPDACSYNILIHGCV 163 (344)
Q Consensus 90 ~~~~~~~----~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (344)
..+|.+. . +.+.|..++...-+.| .|+.......+..... ..+...|.++|...-..|......+..++-...
T Consensus 295 g~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G 373 (552)
T KOG1550|consen 295 GRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELG 373 (552)
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Confidence 6666653 2 6788999999999888 5665544444433333 246789999999988776554444433333222
Q ss_pred --hhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHH-H---HHh--
Q 038490 164 --VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIK-G---LCA-- 235 (344)
Q Consensus 164 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-~---~~~-- 235 (344)
-..+...|..++.+..+.| .|....-...+..+.. ++++.+...+..+... +... ..+-...+. . ...
T Consensus 374 ~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~-~q~~a~~l~~~~~~~~~~~ 449 (552)
T KOG1550|consen 374 LGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEV-AQSNAAYLLDQSEEDLFSR 449 (552)
T ss_pred CCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhH-HhhHHHHHHHhcccccccc
Confidence 3457888999999998887 3332222223333343 6666666655553222 2211 111111111 0 001
Q ss_pred --cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCcCcHHHHHHHHHHcCCCCChhhHHHHHHHH----hc
Q 038490 236 --VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA----GRKNEFPAILKEMKERGCKPNSVTYNALISGF----CK 305 (344)
Q Consensus 236 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~----~~ 305 (344)
..+...+...+.+....| +......|-..|... .+++.|...+......+ ...+|| +...+ .-
T Consensus 450 ~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~ 522 (552)
T KOG1550|consen 450 GVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEGI 522 (552)
T ss_pred ccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCc
Confidence 124455556666555544 444444444444332 24566777777666654 223333 22111 12
Q ss_pred cCCHHHHHHHHHHHhhC
Q 038490 306 EEDFEAAFTILDEMGDK 322 (344)
Q Consensus 306 ~~~~~~a~~~~~~~~~~ 322 (344)
.. +..|.+++++....
T Consensus 523 ~~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 523 KV-LHLAKRYYDQASEE 538 (552)
T ss_pred ch-hHHHHHHHHHHHhc
Confidence 23 67788888877764
No 320
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.53 E-value=1.4 Score=21.86 Aligned_cols=24 Identities=17% Similarity=0.164 Sum_probs=9.9
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHh
Q 038490 88 NVIGFYGRARLLERALQMFDEMSS 111 (344)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~ 111 (344)
.+...+...|++++|++.|++..+
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 321
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.51 E-value=0.54 Score=23.21 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=12.0
Q ss_pred HHHHHHhcCCchHHHHHHHHhhh
Q 038490 53 IITKLGRAKMFDEMQQILHQLKH 75 (344)
Q Consensus 53 l~~~~~~~~~~~~a~~~~~~~~~ 75 (344)
+..++.+.|++++|.+.|+++..
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 44445555555555555555544
No 322
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.47 E-value=11 Score=31.31 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=16.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCC
Q 038490 231 KGLCAVGELSLALGVKEEMVRDKI 254 (344)
Q Consensus 231 ~~~~~~~~~~~a~~~~~~~~~~~~ 254 (344)
......|..+.|..+++.+.+.++
T Consensus 162 ~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 162 RFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHCCchHHHHHHHHHHHHHHc
Confidence 334567778888888877777544
No 323
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.98 E-value=10 Score=30.19 Aligned_cols=202 Identities=10% Similarity=0.040 Sum_probs=117.1
Q ss_pred CCCCchhHHHHHHHH-HHhcccHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHhccC----C
Q 038490 78 RIVPKEIIFCNVIGF-YGRARLLERALQMFDEMSSFNVQMTV---KFFNTLLNPKLTCGKLDRMKELFQIMEKYV----S 149 (344)
Q Consensus 78 ~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~ 149 (344)
+..||...=+.--.. -.+....++|+.-|++..+..-.... .....++..+.+.+++++....+.++.... .
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 346666544332211 12455788999999988865322222 345567788888999999888887764321 1
Q ss_pred --CCcccHHHHHHHHHhhCChhHHHHHHHHHhhC-----CCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCC--
Q 038490 150 --PDACSYNILIHGCVVSRRLEDAWKVFDEMVKR-----RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK-- 220 (344)
Q Consensus 150 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 220 (344)
-+..+.|.++..-+.+.+.+.-...++.-.+. +-+.=-.|-+.+...|...+.+.+..++++++.++....
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 34456677777766666666655555543321 111112334566677778888888888887765432211
Q ss_pred --------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHH----HHHHHcCCcCcHHH
Q 038490 221 --------PDGQVFASLIKGLCAVGELSLALGVKEEMVRDK-IEMDAGIYSSLI----SALFKAGRKNEFPA 279 (344)
Q Consensus 221 --------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~----~~~~~~g~~~~a~~ 279 (344)
.-..+|..=|+.|....+-.+...++++..... --|.+.....+- .+..+.|++++|..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 112456666777777777777777777765421 223444433222 12344566666543
No 324
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.87 E-value=13 Score=31.22 Aligned_cols=194 Identities=12% Similarity=0.106 Sum_probs=99.5
Q ss_pred HHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHH
Q 038490 53 IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNV----QMTVKFFNTLLNPK 128 (344)
Q Consensus 53 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~ 128 (344)
.+.+.-+.|+++...+........ .++...+..+... +.++++++....+.....-. ......|.......
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~---~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l 78 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED---SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSL 78 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC---ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 356777888988866666555432 2455555555544 78888888888877754210 01111222222222
Q ss_pred HhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHh-----hCChh---HHHHHHHHHhh--CCCCcCHhhHHHHHHHHH
Q 038490 129 LTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVV-----SRRLE---DAWKVFDEMVK--RRLQPTLVTFGTLIYGLC 198 (344)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~---~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~ 198 (344)
.+...+.+..++.+-..... .+......++..+.. ..+++ ..+.+=..+.. ........++..+...+.
T Consensus 79 ~~lq~L~Elee~~~~~~~~~-~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 79 VKLQQLVELEEIIELKSNLS-QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HHHhHHHHHHHHHHHHHhhc-ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 22222222222222221100 001111122221111 11111 11111111111 112335567888889999
Q ss_pred hhchHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038490 199 LELRVDEALKLKEDIMRVYNV--KPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252 (344)
Q Consensus 199 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (344)
+.|.++.|...+..+.+.... ...+.+...-+...-..|+..+|...++.....
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999987653210 113344444566677889999999999988873
No 325
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.85 E-value=5.5 Score=29.52 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHhhCCCCcCHhhHHHHHHHH
Q 038490 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197 (344)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 197 (344)
+++|...|++..+. .|+...|+.-+...
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 34444455554443 56666666555443
No 326
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.43 E-value=37 Score=36.01 Aligned_cols=295 Identities=12% Similarity=0.007 Sum_probs=154.0
Q ss_pred hhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHH
Q 038490 8 LACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFC 87 (344)
Q Consensus 8 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (344)
++.+-.+.+.+.+|+..|++-.... ..-.-....|..+...|...+++|...-+...-.. .|+ +.
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~e--------k~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~s---l~ 1453 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTE--------KEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPS---LY 1453 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcccc--------chhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----Ccc---HH
Confidence 4445566788888998888741110 01111233344455589999999998888764222 122 22
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHH-HHHHHHHhhC
Q 038490 88 NVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYN-ILIHGCVVSR 166 (344)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~ 166 (344)
.-|......|++..|...|+.+.+.+ ++....++.++......|.+..+....+-......+....++ .-+.+-.+.+
T Consensus 1454 ~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~ 1532 (2382)
T KOG0890|consen 1454 QQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLS 1532 (2382)
T ss_pred HHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhc
Confidence 34445567899999999999999886 555777777777777777777776655555443332222222 2233335555
Q ss_pred ChhHHHHHHH--------------HHhhCCCCcCHhhHHHHH-----------HHHHhhchHHHHHHHHHHHH-------
Q 038490 167 RLEDAWKVFD--------------EMVKRRLQPTLVTFGTLI-----------YGLCLELRVDEALKLKEDIM------- 214 (344)
Q Consensus 167 ~~~~a~~~~~--------------~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~------- 214 (344)
+++....... .+... .+-|...+..++ .++...|.+..+.++.-++.
T Consensus 1533 qwD~~e~~l~~~n~e~w~~~~~g~~ll~~-~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1533 QWDLLESYLSDRNIEYWSVESIGKLLLRN-KKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred chhhhhhhhhcccccchhHHHHHHHHHhh-cccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 5555544432 00000 011111110011 11222222222222211110
Q ss_pred ---HhcCCCCCHH------HHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCC-----CHHHHHHHHHHHHHcCCcCcHHH
Q 038490 215 ---RVYNVKPDGQ------VFASLIKGLCAVGELSLALGVKE-EMVRDKIEM-----DAGIYSSLISALFKAGRKNEFPA 279 (344)
Q Consensus 215 ---~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~ 279 (344)
...++.++.. -|..-+..-....+..+-+--++ .+......| -..+|-...+.....|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 0011122111 11111111001111111111111 111111111 34568888888888999999998
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 038490 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322 (344)
Q Consensus 280 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 322 (344)
.+-...+.+ -+..+-.......+.|+...|+.++++..+.
T Consensus 1692 all~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1692 ALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 887777765 2345666777888999999999999998854
No 327
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.22 E-value=23 Score=33.37 Aligned_cols=195 Identities=15% Similarity=0.097 Sum_probs=105.1
Q ss_pred HHhcCChHHHHHHHHHHhccCC-CCcc-------cHHHHHH-HHHhhCChhHHHHHHHHHhhC----CCCcCHhhHHHHH
Q 038490 128 KLTCGKLDRMKELFQIMEKYVS-PDAC-------SYNILIH-GCVVSRRLEDAWKVFDEMVKR----RLQPTLVTFGTLI 194 (344)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~~~-~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 194 (344)
.....++++|..+..++...-+ |+.. .|+.+-. .....|+++.|+++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456889999999988765543 2221 2333322 234568889999888877654 2233445566666
Q ss_pred HHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHH---HH--HHHHHhcCChH--HHHHHHHHHHHC---CC---CCCHHHH
Q 038490 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA---SL--IKGLCAVGELS--LALGVKEEMVRD---KI---EMDAGIY 261 (344)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l--~~~~~~~~~~~--~a~~~~~~~~~~---~~---~~~~~~~ 261 (344)
.+..-.|++++|..+.++..+.. -.-++..+. .+ ...+...|+.. +....+...... .. .+-..++
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a-~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMA-RQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHH-HHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 77777899999999887754431 122322222 22 22344566332 223333333221 00 1123445
Q ss_pred HHHHHHHHHcC-CcCcHHHHHHHHHHcCCCCChhhH--HHHHHHHhccCCHHHHHHHHHHHhhCC
Q 038490 262 SSLISALFKAG-RKNEFPAILKEMKERGCKPNSVTY--NALISGFCKEEDFEAAFTILDEMGDKG 323 (344)
Q Consensus 262 ~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~ 323 (344)
..+..++.+.. ...++..-++-.......|-.... ..|+......|+.++|...++++....
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 55555555521 111222222222222222222222 256677888999999999999997543
No 328
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.15 E-value=7.3 Score=29.94 Aligned_cols=59 Identities=8% Similarity=0.032 Sum_probs=35.3
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 038490 87 CNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK 146 (344)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 146 (344)
+..++.+.+.+...+++...+.-.+.. +.+...-..+++.++-.|+|++|..-++..-.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 344555556666666666666665554 44555556666666666666666665555443
No 329
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.44 E-value=19 Score=31.62 Aligned_cols=179 Identities=13% Similarity=0.092 Sum_probs=123.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHH
Q 038490 115 QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194 (344)
Q Consensus 115 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 194 (344)
+.|.....+++..+.....+.-++.+..+|...+ .+...+..++.+|... ..+.-..+|+++.+..+. |.+.-..+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 5566778889999999999999999999988754 5667888999999988 677788899988887544 444444455
Q ss_pred HHHHhhchHHHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 038490 195 YGLCLELRVDEALKLKEDIMRVYNVKPD------GQVFASLIKGLCAVGELSLALGVKEEMVR-DKIEMDAGIYSSLISA 267 (344)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~ 267 (344)
.- ...++...+..+|..+.... -|- ...|..+... -..+.+....+...+.. .|...-...+.-+-.-
T Consensus 140 ~~-yEkik~sk~a~~f~Ka~yrf--I~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 140 DK-YEKIKKSKAAEFFGKALYRF--IPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HH-HHHhchhhHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 44 44588888888888876532 221 1244444432 13466777777777665 3444445556666678
Q ss_pred HHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038490 268 LFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG 302 (344)
Q Consensus 268 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 302 (344)
|....++++|++++..+.+..-+ |...-..++.-
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 88899999999999988776433 44444444433
No 330
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.31 E-value=1.8 Score=23.53 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=12.9
Q ss_pred HHHHHHhhCChhHHHHHHHHHhhC
Q 038490 158 LIHGCVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~~ 181 (344)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555555555555555555543
No 331
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.30 E-value=11 Score=28.60 Aligned_cols=80 Identities=11% Similarity=-0.004 Sum_probs=49.6
Q ss_pred HHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCh
Q 038490 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN--VKPDGQVFASLIKGLCAVGEL 239 (344)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 239 (344)
+.+.| -+.|.+.|-++...+.--++.....+. .|....+.+++..++.++++... -.+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~-d~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFG-DQEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccC-cHHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 33434 345666666666665544544444444 44446677777777777665432 245677788888888888877
Q ss_pred HHHH
Q 038490 240 SLAL 243 (344)
Q Consensus 240 ~~a~ 243 (344)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7764
No 332
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=86.45 E-value=9.8 Score=27.17 Aligned_cols=49 Identities=6% Similarity=0.286 Sum_probs=23.7
Q ss_pred ChhhHHHHHHHHhccCC-HHHHHHHHHHHhhCCCCCChhhHHHHHHHHhh
Q 038490 292 NSVTYNALISGFCKEED-FEAAFTILDEMGDKGCKANPISYNVILGGLCK 340 (344)
Q Consensus 292 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 340 (344)
+...|..++.+..+..- ---+..+|.-|.+.+.++++.-|..+++++.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 33445555555544333 22344445555544555555555555555543
No 333
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.28 E-value=16 Score=29.50 Aligned_cols=118 Identities=11% Similarity=0.214 Sum_probs=81.7
Q ss_pred hCChhHHHHHHHHHhh-CCCCcCHhhHHHHHHHHHh-hc-hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 038490 165 SRRLEDAWKVFDEMVK-RRLQPTLVTFGTLIYGLCL-EL-RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241 (344)
Q Consensus 165 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 241 (344)
...+.+|+++|+.... ..+--|......+++.... .+ ....-.++.+-+....+-.++..+...++..+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3446677777774322 2344577777777776655 22 2333334444555555667788888889999999999999
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcCcHHHHHH
Q 038490 242 ALGVKEEMVRD-KIEMDAGIYSSLISALFKAGRKNEFPAILK 282 (344)
Q Consensus 242 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 282 (344)
-.++++..... ++.-|...|..+++.....|+..-...+.+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 99998888765 566688899999999999998755555544
No 334
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.15 E-value=18 Score=29.84 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=35.6
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038490 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252 (344)
Q Consensus 193 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (344)
+..+..+.|+..+|.+.+++++++..+..-..+...++.++....-+.....++.+..+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 444445678888888888887765432222234456666666666666665555555443
No 335
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.10 E-value=5.8 Score=31.89 Aligned_cols=72 Identities=10% Similarity=-0.003 Sum_probs=45.3
Q ss_pred cHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHH----HHhcCCCCCHHHH
Q 038490 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI----MRVYNVKPDGQVF 226 (344)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~ 226 (344)
+++...+.|..+|.+.+|.++.++....+ +.+...+-.++..+...|+--.+.+.++++ ....|+..+..++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 44556677777888888888777776652 446666777777777777755555555443 2234555554443
No 336
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=85.91 E-value=5.2 Score=26.65 Aligned_cols=82 Identities=11% Similarity=0.065 Sum_probs=31.2
Q ss_pred CchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 038490 62 MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141 (344)
Q Consensus 62 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 141 (344)
..++|..|.+.+....+ ....+--.-+..+...|++++| +..-... ..||...|..|- -.+.|-.+++...+
T Consensus 21 cH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~-~~pdL~p~~AL~--a~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEA---LLLPQCH-CYPDLEPWAALC--AWKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHH---HHHHTTS---GGGHHHHHHH--HHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHH---HHhcccC-CCccHHHHHHHH--HHhhccHHHHHHHH
Confidence 44555555555554321 1111111222334455555555 1111111 134444443332 24455555555555
Q ss_pred HHHhccCCCC
Q 038490 142 QIMEKYVSPD 151 (344)
Q Consensus 142 ~~~~~~~~~~ 151 (344)
.++...+.|.
T Consensus 93 ~rla~~g~~~ 102 (116)
T PF09477_consen 93 TRLASSGSPE 102 (116)
T ss_dssp HHHCT-SSHH
T ss_pred HHHHhCCCHH
Confidence 5555444433
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.88 E-value=2 Score=21.28 Aligned_cols=27 Identities=7% Similarity=0.052 Sum_probs=15.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhh
Q 038490 49 HYDLIITKLGRAKMFDEMQQILHQLKH 75 (344)
Q Consensus 49 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 75 (344)
+|..+...+...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555556666666666666655544
No 338
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.59 E-value=24 Score=30.82 Aligned_cols=127 Identities=11% Similarity=0.034 Sum_probs=87.5
Q ss_pred HHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038490 53 IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132 (344)
Q Consensus 53 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 132 (344)
-|.-....|+.-.|-+-+....+...-.|+... .....+...|+++.+.+.+...... +.....+...+++.....|
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchh
Confidence 344555678877776655555544222344333 3344567889999999988776543 2445667888999999999
Q ss_pred ChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCC
Q 038490 133 KLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR 182 (344)
Q Consensus 133 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (344)
+++.|...-..|......+..........--..|-++++...|++....+
T Consensus 372 r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 372 RWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99999999998887655555555444444556677899999999887654
No 339
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.21 E-value=6.3 Score=32.47 Aligned_cols=90 Identities=10% Similarity=0.083 Sum_probs=57.4
Q ss_pred HHHHHhcCCchHHHHHHHHhhhcCCCCC-chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038490 54 ITKLGRAKMFDEMQQILHQLKHDTRIVP-KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG 132 (344)
Q Consensus 54 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 132 (344)
..-|.+.|.+++|++.|...... .| +..++..-..+|.+...+..|+.-.......+ ..-+..|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~---~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV---YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc---CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 34577889999999999887763 35 77888888889999998888877777666543 111222333333333344
Q ss_pred ChHHHHHHHHHHhcc
Q 038490 133 KLDRMKELFQIMEKY 147 (344)
Q Consensus 133 ~~~~a~~~~~~~~~~ 147 (344)
...+|.+-++.....
T Consensus 180 ~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL 194 (536)
T ss_pred hHHHHHHhHHHHHhh
Confidence 555555555544443
No 340
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=85.11 E-value=6.5 Score=27.09 Aligned_cols=48 Identities=4% Similarity=0.134 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC
Q 038490 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS 149 (344)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 149 (344)
..+.++.+..-++.|++.+...-++++-+.+|+..|.++|+-++....
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g 115 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG 115 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Confidence 444555555566667777777777777777777777777776665444
No 341
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.02 E-value=16 Score=28.23 Aligned_cols=185 Identities=12% Similarity=0.045 Sum_probs=108.8
Q ss_pred hcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHH
Q 038490 130 TCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209 (344)
Q Consensus 130 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 209 (344)
..|-+..|.-=|.......|.-+..||-+.-.+...|+++.|.+.|+...+.+..-+-...|.-| ++.-.|++.-|.+-
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d 155 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDD 155 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHH
Confidence 34555555555665555556667789999999999999999999999998874332222222222 34457888888877
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcC
Q 038490 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE-EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288 (344)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 288 (344)
+...-+...-.|-...|--+.. ..-++.+|..-+. +... .|..-|...+..|.- |.+ ....+++++....
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gki-S~e~l~~~~~a~a 226 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKI-SEETLMERLKADA 226 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhc-cHHHHHHHHHhhc
Confidence 7666655433343334433332 3345666655443 3332 244444433332221 222 1233444443321
Q ss_pred CC------CChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCC
Q 038490 289 CK------PNSVTYNALISGFCKEEDFEAAFTILDEMGDKGC 324 (344)
Q Consensus 289 ~~------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 324 (344)
-. .-..||--+..-+...|+.++|..+|+-.+..++
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 10 0124667778888899999999999998876543
No 342
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=84.60 E-value=32 Score=31.42 Aligned_cols=92 Identities=11% Similarity=0.012 Sum_probs=33.7
Q ss_pred cHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038490 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGL 233 (344)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 233 (344)
.|..-+..+..+++.. ...++.+..+-.-.+......++..|.+.|-.+.+..+.+.+-... ....-|..-+..+
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~---~~~~~~g~AL~~~ 448 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL---LKEGRYGEALSWF 448 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HHCCCHHHHHHHH
Confidence 3444444443333222 3344444443223344455566667777777777766666543321 1123344445555
Q ss_pred HhcCChHHHHHHHHHHH
Q 038490 234 CAVGELSLALGVKEEMV 250 (344)
Q Consensus 234 ~~~~~~~~a~~~~~~~~ 250 (344)
.+.|+......+.+.+.
T Consensus 449 ~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 449 IRAGDYSLVTRIADRLL 465 (566)
T ss_dssp H----------------
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 56666555554444444
No 343
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.55 E-value=19 Score=28.77 Aligned_cols=186 Identities=11% Similarity=0.070 Sum_probs=116.7
Q ss_pred hcCCchHHHHHHHHhhhcCCCCCc--hhHHHHHHHHHHhcccHHHHHHHHHHHHh---cCC--CCCHHHHHHHHHHHHhc
Q 038490 59 RAKMFDEMQQILHQLKHDTRIVPK--EIIFCNVIGFYGRARLLERALQMFDEMSS---FNV--QMTVKFFNTLLNPKLTC 131 (344)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~ 131 (344)
+...+++|+.-|++..+..|-+.+ -..+..++....+.+++++....|.+++. ..+ .-+....|+++..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 445889999999998875443322 24556788999999999999999988863 111 23445677777766666
Q ss_pred CChHHHHHHHHHHhccCC--CCcc----cHHHHHHHHHhhCChhHHHHHHHHHhhCCC----CcC-------HhhHHHHH
Q 038490 132 GKLDRMKELFQIMEKYVS--PDAC----SYNILIHGCVVSRRLEDAWKVFDEMVKRRL----QPT-------LVTFGTLI 194 (344)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~--~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~-------~~~~~~l~ 194 (344)
.+.+....+++.-.+.-. .+.. |-.-|...|...|++.+..+++.++...-. .-| ...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 666555555543322110 2222 234567788888888888888888765311 111 23465666
Q ss_pred HHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH----HHhcCChHHHHH
Q 038490 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG----LCAVGELSLALG 244 (344)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~ 244 (344)
..|....+-..-..++++.+.-...-|.+.+...+-.+ ..+.|++++|..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 77777777777777787776655556766665544332 234567776654
No 344
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.54 E-value=3.5 Score=20.37 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 038490 226 FASLIKGLCAVGELSLALGVKEEMVR 251 (344)
Q Consensus 226 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 251 (344)
|..+...+...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444555555555555555555544
No 345
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=84.46 E-value=7.4 Score=26.84 Aligned_cols=47 Identities=9% Similarity=0.048 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
+..+-+..+...++.|++.+...-+++|.+.+|+..|.++|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444555555566666666666666666666666666666666544
No 346
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.05 E-value=36 Score=31.66 Aligned_cols=155 Identities=13% Similarity=0.055 Sum_probs=86.7
Q ss_pred hhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHH
Q 038490 8 LACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFC 87 (344)
Q Consensus 8 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (344)
-+.-+.+.+.+++|+++-+...... +.+. -...+..+|..+.-.|++++|-...-.|... +..-|.
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~--------~~~~-i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe 427 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNE--------ERFV-IKKVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWE 427 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCc--------cccc-hHHHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHH
Confidence 3455667788888888887763322 1111 3456777888888888888888887777643 344455
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh--------------cc---CCC
Q 038490 88 NVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME--------------KY---VSP 150 (344)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------~~---~~~ 150 (344)
..+..+...++... ++.-+.......+..+|..++..+.. .+...-.+...... .. ...
T Consensus 428 ~~V~~f~e~~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se 503 (846)
T KOG2066|consen 428 LWVFKFAELDQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE 503 (846)
T ss_pred HHHHHhccccccch---hhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc
Confidence 55555544444432 22222222212345667777766665 22222222211110 00 011
Q ss_pred CcccHHHHHHHHHhhCChhHHHHHHHHHhh
Q 038490 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVK 180 (344)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (344)
+...-..|+..|...+++..|.+++-...+
T Consensus 504 ~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 504 STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 223344588888999999999888876653
No 347
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=83.50 E-value=24 Score=29.09 Aligned_cols=134 Identities=13% Similarity=0.091 Sum_probs=72.0
Q ss_pred CCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCH
Q 038490 183 LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVR----DKIEMDA 258 (344)
Q Consensus 183 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~ 258 (344)
+..|...++.+..+ +..+.++-.+..+...+..|-..-...+......|++.|+.+.|.+.++...+ .|.+.|+
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 44455555554432 22333444444444333333333345566677788888888888877766544 4666665
Q ss_pred HHHHHHH-HHHHHcCCcCcHHHHHHHHHHcCCCCChh----hHHHHHHHHhccCCHHHHHHHHHHHh
Q 038490 259 GIYSSLI-SALFKAGRKNEFPAILKEMKERGCKPNSV----TYNALISGFCKEEDFEAAFTILDEMG 320 (344)
Q Consensus 259 ~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~ 320 (344)
..+.+=+ -.|....-+.+-++..+.+.+.|...+.. +|..+- +....++.+|-.+|-+..
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 5544322 23334444455566666666666544432 333332 234557777777776665
No 348
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.27 E-value=17 Score=30.09 Aligned_cols=89 Identities=9% Similarity=-0.018 Sum_probs=58.6
Q ss_pred HHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHH
Q 038490 126 NPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205 (344)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (344)
+-|.+.|.+++|...|.......+.+..++..-..+|.+...+..|+.-.......+ ..-...|+.-+.+-...|...+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 347788889999999988877766688888888888888888887776666655432 1112234444444444556666
Q ss_pred HHHHHHHHHH
Q 038490 206 ALKLKEDIMR 215 (344)
Q Consensus 206 a~~~~~~~~~ 215 (344)
|.+=++.+++
T Consensus 184 AKkD~E~vL~ 193 (536)
T KOG4648|consen 184 AKKDCETVLA 193 (536)
T ss_pred HHHhHHHHHh
Confidence 6665555554
No 349
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=83.23 E-value=6.5 Score=29.80 Aligned_cols=33 Identities=12% Similarity=-0.008 Sum_probs=19.1
Q ss_pred CCchhHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 038490 80 VPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112 (344)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 112 (344)
.|++.+|..++.++...|+.++|.++..++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455555555555556666666665555555543
No 350
>PRK10941 hypothetical protein; Provisional
Probab=82.19 E-value=23 Score=28.56 Aligned_cols=78 Identities=9% Similarity=-0.016 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhC-CCCcCHhhHHHHHHHH
Q 038490 120 FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR-RLQPTLVTFGTLIYGL 197 (344)
Q Consensus 120 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 197 (344)
..+.+-.+|.+.++++.|+++.+.+....|.+..-+.--.-.|.+.|.+..|..=++...+. .-.|+.......+...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 34556667778888888888888887777766666666677788888888888877777654 2334444444444443
No 351
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=81.58 E-value=7 Score=21.68 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=21.4
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 038490 304 CKEEDFEAAFTILDEMGDKGCKANPISYNVILG 336 (344)
Q Consensus 304 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 336 (344)
.+.|-..++..++++|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355666666667777777776666666666654
No 352
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.55 E-value=13 Score=24.59 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=23.4
Q ss_pred HHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Q 038490 56 KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFN 113 (344)
Q Consensus 56 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 113 (344)
.+...|++++|..+.+.+ ..||...|.+|... +.|..+++..-+..|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL-----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC-----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 344455555555544433 13444444443322 4454454444444444444
No 353
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=81.37 E-value=26 Score=28.16 Aligned_cols=130 Identities=8% Similarity=-0.040 Sum_probs=76.1
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcC----CCCCch--------hHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT----RIVPKE--------IIFCNVIGFYGRARLLERALQMFDEMSSFN 113 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 113 (344)
-+.......+.+.-..+|..|++.-++-.+.- +...+. .....-|.+++..++|.+++...-..-+.-
T Consensus 34 a~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~p 113 (309)
T PF07163_consen 34 AVSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVP 113 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCc
Confidence 34445555556666678888888777654421 011111 112234677778888888777665554322
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC-CCcccHHHHHHHHHh-----hCChhHHHHHH
Q 038490 114 VQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHGCVV-----SRRLEDAWKVF 175 (344)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~-----~~~~~~a~~~~ 175 (344)
-+....+...-|-.|.+.++...+.++-....+... .+..-|..++..|.. .|.+++|+++.
T Consensus 114 EklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 114 EKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred ccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 122334455556667788888777777776655433 344447776666654 57777777776
No 354
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.98 E-value=25 Score=27.62 Aligned_cols=83 Identities=12% Similarity=-0.029 Sum_probs=40.7
Q ss_pred HHhcCCchHHHHHHHHhhhcCCCCCch-hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCh
Q 038490 57 LGRAKMFDEMQQILHQLKHDTRIVPKE-IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK-FFNTLLNPKLTCGKL 134 (344)
Q Consensus 57 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 134 (344)
|.....++.|+.-|.+.+. +.|+. .-|..=+-++.+..+++.+..--...++. .|+.. ....+-........+
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 3344556666665555544 23444 33344455555566666655555554443 23322 223333444455555
Q ss_pred HHHHHHHHHH
Q 038490 135 DRMKELFQIM 144 (344)
Q Consensus 135 ~~a~~~~~~~ 144 (344)
+.|...+.+.
T Consensus 95 ~eaI~~Lqra 104 (284)
T KOG4642|consen 95 DEAIKVLQRA 104 (284)
T ss_pred cHHHHHHHHH
Confidence 6666555554
No 355
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.83 E-value=28 Score=28.06 Aligned_cols=91 Identities=10% Similarity=-0.028 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCC-CCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHH
Q 038490 120 FFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198 (344)
Q Consensus 120 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 198 (344)
.+..=|++++..++|.++..+.-+.-+... .........|-.|.+.++...+.++-..-...--.-+...|..++..|.
T Consensus 85 LcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 85 LCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 344557899999999999887765544332 4556677788899999999999988888776533334445777766655
Q ss_pred h-----hchHHHHHHHH
Q 038490 199 L-----ELRVDEALKLK 210 (344)
Q Consensus 199 ~-----~~~~~~a~~~~ 210 (344)
. .|.+++|+++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 4 69999998887
No 356
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.73 E-value=14 Score=28.05 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038490 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252 (344)
Q Consensus 220 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (344)
.|+..+|..++.++...|+.++|.+..+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666666666666666666666655555544
No 357
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.67 E-value=33 Score=31.67 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHh---cccHHHHHHHHHHHHhc
Q 038490 84 IIFCNVIGFYGR---ARLLERALQMFDEMSSF 112 (344)
Q Consensus 84 ~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 112 (344)
.-+..||..|.+ ..+..+|.++|-.+...
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 345556666654 34566666666555543
No 358
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=80.66 E-value=1.9 Score=29.93 Aligned_cols=28 Identities=14% Similarity=0.400 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 038490 308 DFEAAFTILDEMGDKGCKANPISYNVILGG 337 (344)
Q Consensus 308 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 337 (344)
.-..|-.+|++|.+.|-+||. |+.|+..
T Consensus 110 sk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 110 SKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred cCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 334455555555555555443 5555544
No 359
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.47 E-value=44 Score=30.18 Aligned_cols=128 Identities=16% Similarity=-0.032 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHH
Q 038490 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214 (344)
Q Consensus 135 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 214 (344)
+-+-.++..|.....|--...|...-.+.-.|+...|...+.........-..+....+.....+.|-..+|..++.+.+
T Consensus 590 e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 590 EIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 33444555554422233233333333344567777887777766544322233445556666677777777877777766
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038490 215 RVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265 (344)
Q Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 265 (344)
.-. ...+-++..+.+++....+++.|++.|++..+...+ +...-+.|.
T Consensus 670 ~~~--~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~ 717 (886)
T KOG4507|consen 670 AIN--SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLK 717 (886)
T ss_pred hhc--ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHH
Confidence 543 333456666777777888888888888888776543 444444443
No 360
>PRK09687 putative lyase; Provisional
Probab=80.20 E-value=30 Score=28.12 Aligned_cols=233 Identities=12% Similarity=0.040 Sum_probs=143.5
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccH----HHHHHHHHHHHhcCCCCCHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL----ERALQMFDEMSSFNVQMTVKFF 121 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 121 (344)
|.......+.++...|..+ +...+..+... ++...-...+.+++..|+. +++...+..+... .++..+-
T Consensus 36 d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQD-VFRLAIELCSS----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CHHHHHHHHHHHHhcCcch-HHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 6667777788888887543 44444445442 4666666677778888763 4677777766433 5666666
Q ss_pred HHHHHHHHhcCCh-----HHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHH
Q 038490 122 NTLLNPKLTCGKL-----DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196 (344)
Q Consensus 122 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 196 (344)
...+.++...+.. ..+...+...... ++..+-...+.++.+.++ +.+...+-.+.+. ++...-...+.+
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D--~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAFD--KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhhC--CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 6666666655421 2233333332221 355556667777777776 4566666666654 244444444445
Q ss_pred HHhhc-hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcC
Q 038490 197 LCLEL-RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275 (344)
Q Consensus 197 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 275 (344)
+.+.+ ....+...+..++. .++..+-...+.++.+.|+. .+...+-...+.+ + .....+.++...|+.
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 55432 24456666666554 45777777888888898885 5666666666543 2 234677888888885
Q ss_pred cHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 038490 276 EFPAILKEMKERGCKPNSVTYNALISGFC 304 (344)
Q Consensus 276 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 304 (344)
+|...+..+.+. .||...-...+.++.
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 788888888875 347666666665553
No 361
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.34 E-value=25 Score=26.62 Aligned_cols=54 Identities=17% Similarity=0.052 Sum_probs=23.7
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 232 GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 232 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
.....|.+++|+..++.....+. .......-.+.+...|+-++|..-|+.....
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 33444555555555544443321 1112222334445555555555555554444
No 362
>PF13934 ELYS: Nuclear pore complex assembly
Probab=79.22 E-value=7.6 Score=30.34 Aligned_cols=97 Identities=16% Similarity=0.083 Sum_probs=58.9
Q ss_pred hhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHH
Q 038490 11 LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI 90 (344)
Q Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 90 (344)
-+...+++++|++.+-... ..|+. ...++.++...|+.+.|..+++..... ..+......++
T Consensus 87 W~LD~~~~~~A~~~L~~ps-------------~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~---l~s~~~~~~~~ 148 (226)
T PF13934_consen 87 WLLDHGDFEEALELLSHPS-------------LIPWF--PDKILQALLRRGDPKLALRYLRAVGPP---LSSPEALTLYF 148 (226)
T ss_pred HHhChHhHHHHHHHhCCCC-------------CCccc--HHHHHHHHHHCCChhHHHHHHHhcCCC---CCCHHHHHHHH
Confidence 3445688899999884431 11122 224778888889999999998886542 22333334444
Q ss_pred HHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038490 91 GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL 129 (344)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (344)
.. ...+.+.+|...-+...+. .....+..++..+.
T Consensus 149 ~~-La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 149 VA-LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCL 183 (226)
T ss_pred HH-HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHH
Confidence 44 5668888888877766652 22445555555554
No 363
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.19 E-value=24 Score=31.71 Aligned_cols=101 Identities=13% Similarity=0.093 Sum_probs=74.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHH
Q 038490 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAF 313 (344)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 313 (344)
.-.|+...|...+.......+.-.-.....|.....+.|....|-.++.+..... ...+.++..+.+++....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3568888888888877765433334445567777788888889999988877765 336677888889999999999999
Q ss_pred HHHHHHhhCCCCCChhhHHHHHH
Q 038490 314 TILDEMGDKGCKANPISYNVILG 336 (344)
Q Consensus 314 ~~~~~~~~~~~~p~~~~~~~ll~ 336 (344)
+.|++..+.. .-+...-+.|..
T Consensus 697 ~~~~~a~~~~-~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 697 EAFRQALKLT-TKCPECENSLKL 718 (886)
T ss_pred HHHHHHHhcC-CCChhhHHHHHH
Confidence 9999998753 224555555544
No 364
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=78.96 E-value=49 Score=29.77 Aligned_cols=134 Identities=9% Similarity=0.149 Sum_probs=96.8
Q ss_pred cchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038490 45 YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124 (344)
Q Consensus 45 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 124 (344)
.+...|..++.---.....+.+..++..+.... |.-...|......=.+.|..+.+.++|++-... ++.+...|...
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHH
Confidence 366667777766666666677888888887652 333345566666667889999999999988763 57777778777
Q ss_pred HHHHH-hcCChHHHHHHHHHHhccCC---CCcccHHHHHHHHHhhCChhHHHHHHHHHhhC
Q 038490 125 LNPKL-TCGKLDRMKELFQIMEKYVS---PDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 125 ~~~~~-~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (344)
+..+. ..|+.+.....|+....... .+...|...+.--..++++.....++++.++.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 76544 45777778888887766543 56677888888878888888888888888764
No 365
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=78.00 E-value=37 Score=27.80 Aligned_cols=20 Identities=30% Similarity=0.705 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhcCChHHHH
Q 038490 224 QVFASLIKGLCAVGELSLAL 243 (344)
Q Consensus 224 ~~~~~l~~~~~~~~~~~~a~ 243 (344)
..|..|+.+++..|+.+..+
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 35667777777777766543
No 366
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.82 E-value=3.3 Score=33.95 Aligned_cols=96 Identities=8% Similarity=-0.156 Sum_probs=64.8
Q ss_pred hcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch-hHHHHHH
Q 038490 12 PRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE-IIFCNVI 90 (344)
Q Consensus 12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~ 90 (344)
....|.+++|++.|-..++ ..++....|..-.+++.+.+++..|++=+...... .||. .-|-.--
T Consensus 124 Aln~G~~~~ai~~~t~ai~-----------lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei---n~Dsa~~ykfrg 189 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIE-----------LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI---NPDSAKGYKFRG 189 (377)
T ss_pred HhcCcchhhhhcccccccc-----------cCCchhhhcccccceeeeccCCchhhhhhhhhhcc---Ccccccccchhh
Confidence 4557788888888877733 34446666767777888888888888877777653 4443 2233333
Q ss_pred HHHHhcccHHHHHHHHHHHHhcCCCCCHHHH
Q 038490 91 GFYGRARLLERALQMFDEMSSFNVQMTVKFF 121 (344)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 121 (344)
.+..-.|+|++|.+.+....+.++.+....+
T Consensus 190 ~A~rllg~~e~aa~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 190 YAERLLGNWEEAAHDLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHhhchHHHHHHHHHHHhccccHHHHHH
Confidence 3444578888888888888888766655444
No 367
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=77.50 E-value=3.4 Score=28.76 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=26.4
Q ss_pred HHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHH
Q 038490 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196 (344)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 196 (344)
...+.|.-..|..+|.+|+++|.+||. |+.|+..
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 344557778899999999999998886 6666654
No 368
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=77.28 E-value=41 Score=28.02 Aligned_cols=122 Identities=11% Similarity=0.090 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHh---hCChhHHHHHHH
Q 038490 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVV---SRRLEDAWKVFD 176 (344)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~ 176 (344)
+.-+.++++.++.+ +.+......++..+.+..+.+...+-++++....+.+...|...+..... .-.+..+..+|.
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 34455555555554 44555555666666666666666666666665554555555555544332 112344444444
Q ss_pred HHhhC------CC----CcCHh-------hHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC
Q 038490 177 EMVKR------RL----QPTLV-------TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD 222 (344)
Q Consensus 177 ~~~~~------~~----~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 222 (344)
+.... +. .+... .+..+...+...|..+.|..+++.+++-.=+.|.
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 33221 11 00111 1222223345678888888888887776444454
No 369
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=77.17 E-value=38 Score=27.50 Aligned_cols=26 Identities=8% Similarity=0.185 Sum_probs=11.8
Q ss_pred hHHHHHHHHHhhchHHHHHHHHHHHH
Q 038490 189 TFGTLIYGLCLELRVDEALKLKEDIM 214 (344)
Q Consensus 189 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 214 (344)
.+..+..-|++-++.+.+.+...+.+
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~~~~ 142 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMRRLM 142 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 34444444444444444444444433
No 370
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.14 E-value=38 Score=27.54 Aligned_cols=57 Identities=9% Similarity=0.109 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHH
Q 038490 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284 (344)
Q Consensus 227 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 284 (344)
+.....|..+|.+.+|.++.+.....+ +.+...+..++..+...||--.+..-++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334455555666666666666555544 235555555666666666655555555544
No 371
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.99 E-value=38 Score=27.44 Aligned_cols=126 Identities=14% Similarity=0.116 Sum_probs=59.8
Q ss_pred HHHHHHhhCChhHHHHHHHHHhhCCCCcCHhh-------HHHHHHHHHhhchHHHHHHH---HHHHHHhcCCCCCHHHHH
Q 038490 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT-------FGTLIYGLCLELRVDEALKL---KEDIMRVYNVKPDGQVFA 227 (344)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~~~~~ 227 (344)
+.+-..+.+++++|+..+.++...|+..|..+ ...+...|...|++..-.+. .++.+....-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 34445556666666666666666665554433 33445555555554433322 223333322233344455
Q ss_pred HHHHHHHhc-CChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCcCcHHHHHHH
Q 038490 228 SLIKGLCAV-GELSLALGVKEEMVRDKIEM-----DAGIYSSLISALFKAGRKNEFPAILKE 283 (344)
Q Consensus 228 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 283 (344)
.++..+... ..++.-+.+.....+-...- -...=.-++..+.+.|.+.+|+.+...
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 555544332 22344343333333211110 111123466677778888877765543
No 372
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.75 E-value=9.8 Score=23.78 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=18.0
Q ss_pred hhchHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 038490 199 LELRVDEALKLKEDIMRVYNVKPD-GQVFASLIKGLCAVGELSLAL 243 (344)
Q Consensus 199 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 243 (344)
...+.++|+..|..+++...-.++ -.++..++.+++..|++.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREML 63 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443222222 123334444444444444443
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.60 E-value=11 Score=23.61 Aligned_cols=46 Identities=7% Similarity=-0.110 Sum_probs=20.0
Q ss_pred hcCCchHHHHHHHHhhhcCCCCCch-hHHHHHHHHHHhcccHHHHHH
Q 038490 59 RAKMFDEMQQILHQLKHDTRIVPKE-IIFCNVIGFYGRARLLERALQ 104 (344)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~ 104 (344)
..++-++|+..+....+...-.|+. .++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555554432111111 233344555555555554443
No 374
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.57 E-value=31 Score=26.17 Aligned_cols=88 Identities=11% Similarity=0.032 Sum_probs=49.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhccCCCCcccH-----HHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHh
Q 038490 125 LNPKLTCGKLDRMKELFQIMEKYVSPDACSY-----NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199 (344)
Q Consensus 125 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 199 (344)
...+...+++++|...++..... +....+ .-|.+.....|.+++|+..++.....+.. ......-.+.+..
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 34556667777777766655532 222222 23445566677777777777666544321 1112223456667
Q ss_pred hchHHHHHHHHHHHHHh
Q 038490 200 ELRVDEALKLKEDIMRV 216 (344)
Q Consensus 200 ~~~~~~a~~~~~~~~~~ 216 (344)
.|+-++|..-|...++.
T Consensus 172 kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 172 KGDKQEARAAYEKALES 188 (207)
T ss_pred cCchHHHHHHHHHHHHc
Confidence 77777777777776654
No 375
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=76.06 E-value=14 Score=22.12 Aligned_cols=50 Identities=8% Similarity=0.127 Sum_probs=34.2
Q ss_pred CCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038490 80 VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130 (344)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 130 (344)
.|....++.++..+++..-.+.++..+.+..+.| ..+..+|..-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4556677778888887777888888888888777 4566666666665554
No 376
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.90 E-value=67 Score=29.74 Aligned_cols=65 Identities=11% Similarity=0.066 Sum_probs=41.9
Q ss_pred cchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhccc-------HHHHHHHHHHHHhc
Q 038490 45 YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL-------LERALQMFDEMSSF 112 (344)
Q Consensus 45 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~ 112 (344)
.+...| .+|-.|.++|++++|.++....... .......+...+..|....+ -++...-|+...+.
T Consensus 110 ~~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 110 NGDPIW-ALIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TTEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCCccH-HHHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 345556 5778899999999999999766653 44555667777777765422 23555556655544
No 377
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=75.54 E-value=22 Score=28.25 Aligned_cols=56 Identities=13% Similarity=0.174 Sum_probs=27.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHcCCcCcHHHHHHH
Q 038490 228 SLIKGLCAVGELSLALGVKEEMVRD----K-IEMDAGIYSSLISALFKAGRKNEFPAILKE 283 (344)
Q Consensus 228 ~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 283 (344)
.+...|.+.|++++|.++|+.+... | ..+...+...+..++...|+.+....+.-+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445555555665555555555321 1 122334444555555555555555544433
No 378
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=75.48 E-value=31 Score=25.74 Aligned_cols=43 Identities=9% Similarity=0.213 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 038490 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254 (344)
Q Consensus 203 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 254 (344)
+++|...|++.... .|+...|+.-+.... +|-++..++.+.+.
T Consensus 96 F~kA~~~FqkAv~~---~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDE---DPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH----TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhc---CCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 56666667666554 788889988887664 35566666666543
No 379
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=75.44 E-value=20 Score=23.36 Aligned_cols=32 Identities=19% Similarity=0.063 Sum_probs=16.8
Q ss_pred HHHHhhchHHHHHHHHHHHHHhcCCCCCHHHH
Q 038490 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226 (344)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 226 (344)
......|++++|...+++.++.....-|..+.
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l 80 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIRLARENGDRRCL 80 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 34455666666666666655443333344333
No 380
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=74.72 E-value=72 Score=29.53 Aligned_cols=194 Identities=15% Similarity=0.101 Sum_probs=111.4
Q ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHHHH-hcCCCCCH--HHHHHHHHHHH-hcCChHHHHHHHHHHhccCCCCc----
Q 038490 81 PKEIIFCNVIGFYGRARLLERALQMFDEMS-SFNVQMTV--KFFNTLLNPKL-TCGKLDRMKELFQIMEKYVSPDA---- 152 (344)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~--~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~---- 152 (344)
.+...|..||.. |++.++.+. +..++|.. .++-.+...+. ...+++.|+..+.+.......+.
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 345666666654 555566665 33344432 35555666665 56789999999987654332211
Q ss_pred --ccHHHHHHHHHhhCChhHHHHHHHHHhhC----CCCcCHhhHHHH-HHHHHhhchHHHHHHHHHHHHHhcCCCCC--H
Q 038490 153 --CSYNILIHGCVVSRRLEDAWKVFDEMVKR----RLQPTLVTFGTL-IYGLCLELRVDEALKLKEDIMRVYNVKPD--G 223 (344)
Q Consensus 153 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 223 (344)
.+-..++..+.+.+... |...+++..+. +..+-...|..+ +..+...++...|.+.++.+........+ .
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 12235566777776666 88888886653 222223334333 22333347999999999887665432333 4
Q ss_pred HHHHHHHHHHH--hcCChHHHHHHHHHHHHCC---------CCCCHHHHHHHHHHHH--HcCCcCcHHHHHHHH
Q 038490 224 QVFASLIKGLC--AVGELSLALGVKEEMVRDK---------IEMDAGIYSSLISALF--KAGRKNEFPAILKEM 284 (344)
Q Consensus 224 ~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~ 284 (344)
.++..++.+.. ..+..+++.+.++.+.... ..|-..+|..+++.++ ..|+++.+...++++
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444443 4455667777777664321 1235566777776554 467766776666554
No 381
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=74.60 E-value=13 Score=24.27 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=12.7
Q ss_pred CCchhhhhhhhccc-CCchHHhhhhcCC
Q 038490 2 PTSSIRLACLPRLQ-KDPKLALQLFKNP 28 (344)
Q Consensus 2 p~~~~~l~~~~~~~-~~~~~A~~~~~~~ 28 (344)
|.++..+...+.+. ++.+...+++..+
T Consensus 4 P~~~~eF~~~w~~~~~~~~~~~~yL~~i 31 (94)
T PF13877_consen 4 PKNSYEFERDWRRLKKDPEERYEYLKSI 31 (94)
T ss_pred CCCHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 44444444444444 4444444444444
No 382
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.32 E-value=45 Score=27.03 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=17.3
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHH
Q 038490 192 TLIYGLCLELRVDEALKLKEDIMR 215 (344)
Q Consensus 192 ~l~~~~~~~~~~~~a~~~~~~~~~ 215 (344)
.++..+.+.|.+.+|+.+...++.
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Confidence 466777888888888877765543
No 383
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=74.23 E-value=6.8 Score=23.20 Aligned_cols=30 Identities=17% Similarity=0.260 Sum_probs=18.3
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 038490 292 NSVTYNALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
|-.-.-.+|.++...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444566677777777777777776654
No 384
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=74.21 E-value=19 Score=25.78 Aligned_cols=62 Identities=11% Similarity=0.130 Sum_probs=33.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccC
Q 038490 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307 (344)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 307 (344)
+.+.+.+.|.+++.. -..++..+.+.++.-.|.++++++.+.++.-+..|--.-+..+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344455566654432 33556666666666777777777777655544444333334444444
No 385
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=73.51 E-value=12 Score=29.73 Aligned_cols=77 Identities=10% Similarity=0.064 Sum_probs=51.6
Q ss_pred HHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHh----cC-CCCCHHHHHHHHHHHHhcCChHHHHH
Q 038490 65 EMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS----FN-VQMTVKFFNTLLNPKLTCGKLDRMKE 139 (344)
Q Consensus 65 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 139 (344)
.|.+.|..... ..........+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++...|+.+....
T Consensus 163 ~A~~~f~~~~~---~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 163 KAYEQFKKYGQ---NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHhcc---chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 34444444332 233445555678888899999999999988853 22 23445677778888888898888777
Q ss_pred HHHHH
Q 038490 140 LFQIM 144 (344)
Q Consensus 140 ~~~~~ 144 (344)
+--++
T Consensus 240 ~~leL 244 (247)
T PF11817_consen 240 TSLEL 244 (247)
T ss_pred HHHHH
Confidence 65554
No 386
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=73.29 E-value=10 Score=30.69 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=31.2
Q ss_pred CCCchh-HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHH
Q 038490 79 IVPKEI-IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122 (344)
Q Consensus 79 ~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 122 (344)
+.|+.. .|+..|+...+.||+++|++++++..+.|+.--..+|.
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 335544 45678888888888888888888888888655444443
No 387
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=71.55 E-value=42 Score=30.75 Aligned_cols=91 Identities=15% Similarity=0.249 Sum_probs=59.3
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChHH------HHHHHHHHhccCCCCcccHHHHH
Q 038490 88 NVIGFYGRARLLERALQMFDEMSSFN--VQMTVKFFNTLLNPKLTCGKLDR------MKELFQIMEKYVSPDACSYNILI 159 (344)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~l~ 159 (344)
+|+.+|...|++..+.++++.+...+ -+.-...+|..++...+.|.++- |.+.++... ...+..||..|+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~--ln~d~~t~all~ 110 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR--LNGDSLTYALLC 110 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh--cCCcchHHHHHH
Confidence 78999999999999999999988643 22335678888888888887542 333333332 115677787777
Q ss_pred HHHHhhCChhHHHHHHHHHhh
Q 038490 160 HGCVVSRRLEDAWKVFDEMVK 180 (344)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~ 180 (344)
.+-..--+-....-++.+...
T Consensus 111 ~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 111 QASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HhhcChHhHHhccHHHHHHHH
Confidence 766553333344445555444
No 388
>PRK11619 lytic murein transglycosylase; Provisional
Probab=71.29 E-value=89 Score=29.13 Aligned_cols=248 Identities=9% Similarity=0.008 Sum_probs=114.6
Q ss_pred CchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 038490 62 MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141 (344)
Q Consensus 62 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 141 (344)
.+++....+++-. +.+.....-...+..+.+.+++....+.+.. . +.+......+..+....|+.++|....
T Consensus 81 ~~~ev~~Fl~~~~---~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~----~-p~~~~~~c~~~~A~~~~G~~~~A~~~a 152 (644)
T PRK11619 81 PAVQVTNFIRANP---TLPPARSLQSRFVNELARREDWRGLLAFSPE----K-PKPVEARCNYYYAKWATGQQQEAWQGA 152 (644)
T ss_pred CHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHccCHHHHHHhcCC----C-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444444444332 2233333334455566667777766653311 1 445555566667777778777666666
Q ss_pred HHHhccCCCCcccHHHHHHHHHhhCChhHHH--HHHHHHhhCC-------------------------------------
Q 038490 142 QIMEKYVSPDACSYNILIHGCVVSRRLEDAW--KVFDEMVKRR------------------------------------- 182 (344)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~--~~~~~~~~~~------------------------------------- 182 (344)
..+=..+...+..++.++..+.+.|.+.... +-++.+...|
T Consensus 153 ~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~ 232 (644)
T PRK11619 153 KELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFA 232 (644)
T ss_pred HHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHh
Confidence 5554444455566666666665444432211 1111111111
Q ss_pred --CCcCHhhHHHHHHHHH--hhchHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 038490 183 --LQPTLVTFGTLIYGLC--LELRVDEALKLKEDIMRVYNVKPDG--QVFASLIKGLCAVGELSLALGVKEEMVRDKIEM 256 (344)
Q Consensus 183 --~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 256 (344)
+.|+...-..++.++. ...+.+.|...+..........+.. .+...+....+..+...++...++...... .
T Consensus 233 ~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~ 310 (644)
T PRK11619 233 RTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--Q 310 (644)
T ss_pred hccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--C
Confidence 0011100010111111 1223344545554432222222211 112222222222211333444444332221 1
Q ss_pred CHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHh
Q 038490 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320 (344)
Q Consensus 257 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 320 (344)
+......-+..-...++++.+...+..|....-. ...-.--+.+++...|+.++|..+|+++.
T Consensus 311 ~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 311 STSLLERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3334444455556778888877777777443211 22233345567677899999999999874
No 389
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.17 E-value=35 Score=24.44 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcc------CCCCcccHHHHHHHHHhhCC-hhHHHHHHHHHhhCCCCcCHhhHHHH
Q 038490 121 FNTLLNPKLTCGKLDRMKELFQIMEKY------VSPDACSYNILIHGCVVSRR-LEDAWKVFDEMVKRRLQPTLVTFGTL 193 (344)
Q Consensus 121 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 193 (344)
.+.++.-.+..+++.....+++.+... +..+...|.+++.+.++..- ---+..+|.-+.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 344444444445555555555544211 12455566666666655554 33455666666666666677777777
Q ss_pred HHHHHh
Q 038490 194 IYGLCL 199 (344)
Q Consensus 194 ~~~~~~ 199 (344)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 766443
No 390
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=70.38 E-value=9.6 Score=17.57 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=8.5
Q ss_pred HHHHHHhcccHHHHHHHHHHH
Q 038490 89 VIGFYGRARLLERALQMFDEM 109 (344)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~ 109 (344)
+...+...++++.|...++..
T Consensus 7 ~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 7 LGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 333333444444444444333
No 391
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=70.34 E-value=16 Score=20.22 Aligned_cols=31 Identities=6% Similarity=0.171 Sum_probs=14.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038490 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265 (344)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 265 (344)
+.|-.+++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444444555555555455444444444433
No 392
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=69.97 E-value=34 Score=23.81 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 038490 101 RALQMFDEMSSFNVQMT-VKFFNTLLNPKLTCGKLDRMKELFQI 143 (344)
Q Consensus 101 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 143 (344)
.+.++|..|...|+-.. ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 88888888887765443 56788888888888999999988875
No 393
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.85 E-value=53 Score=31.50 Aligned_cols=116 Identities=15% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCHHHHHH--
Q 038490 190 FGTLIYGLCLELRVDEALKLKEDIMRVY--NVKPDGQVFASLIKGLCAVGEL--SLALGVKEEMVRDKIEMDAGIYSS-- 263 (344)
Q Consensus 190 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~-- 263 (344)
|..|+..|...|..++|++++.+..... .-..-...+..+++...+.+.. +..+++-+...+....-...++..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred ----------HHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 038490 264 ----------LISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305 (344)
Q Consensus 264 ----------l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 305 (344)
-+-.|......+-+...++.+....-.++....+.++..|++
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
No 394
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=69.13 E-value=70 Score=27.27 Aligned_cols=21 Identities=24% Similarity=0.107 Sum_probs=12.3
Q ss_pred hhhhhcccCCchHHhhhhcCC
Q 038490 8 LACLPRLQKDPKLALQLFKNP 28 (344)
Q Consensus 8 l~~~~~~~~~~~~A~~~~~~~ 28 (344)
|+...-.+|++++|.+++.++
T Consensus 137 L~~ike~~Gdi~~Aa~il~el 157 (439)
T KOG1498|consen 137 LAKIKEEQGDIAEAADILCEL 157 (439)
T ss_pred HHHHHHHcCCHHHHHHHHHhc
Confidence 344444566666666666665
No 395
>PHA02875 ankyrin repeat protein; Provisional
Probab=68.82 E-value=69 Score=27.75 Aligned_cols=212 Identities=13% Similarity=0.069 Sum_probs=105.9
Q ss_pred HHHHhcCCchHHHHHHHHhhhcCCCCCchhH--HHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHh
Q 038490 55 TKLGRAKMFDEMQQILHQLKHDTRIVPKEII--FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK--FFNTLLNPKLT 130 (344)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 130 (344)
...++.|+.+-+..+++ . |..|+... -.+.+...+..|+.+-+ +.+.+.|..|+.. .....+...+.
T Consensus 7 ~~A~~~g~~~iv~~Ll~----~-g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 7 CDAILFGELDIARRLLD----I-GINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHhCCHHHHHHHHH----C-CCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHH
Confidence 34456677766655554 3 56665432 23445556677777543 4445555444432 12234556667
Q ss_pred cCChHHHHHHHHHHhccCC-CCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhH--HHHHHHHHhhchHHHHH
Q 038490 131 CGKLDRMKELFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF--GTLIYGLCLELRVDEAL 207 (344)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~ 207 (344)
.|+.+.+..+++.-..... .+..-. +.+...+..|+.+ +++.+.+.|..|+.... ...+...+..|+.+.+.
T Consensus 78 ~g~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 78 EGDVKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred CCCHHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 8888877666654321111 111112 2333444566654 44555556665543211 12334446677776655
Q ss_pred HHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCcCcHHHHH
Q 038490 208 KLKEDIMRVYNVKPD---GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGI---YSSLISALFKAGRKNEFPAIL 281 (344)
Q Consensus 208 ~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~ 281 (344)
.+++. |..++ ..-.+.+ ...+..|+.+ +.+.+.+.|..++... ...++...+..|+. ++.
T Consensus 153 ~Ll~~-----g~~~~~~d~~g~TpL-~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv 218 (413)
T PHA02875 153 LLIDH-----KACLDIEDCCGCTPL-IIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIV 218 (413)
T ss_pred HHHhc-----CCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHH
Confidence 44432 33332 1222233 3344556655 4445566666655332 12344434455554 456
Q ss_pred HHHHHcCCCCChh
Q 038490 282 KEMKERGCKPNSV 294 (344)
Q Consensus 282 ~~~~~~~~~p~~~ 294 (344)
+.+.+.|..++..
T Consensus 219 ~~Ll~~gad~n~~ 231 (413)
T PHA02875 219 RLFIKRGADCNIM 231 (413)
T ss_pred HHHHHCCcCcchH
Confidence 6667778777653
No 396
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.20 E-value=5.7 Score=32.69 Aligned_cols=94 Identities=11% Similarity=0.010 Sum_probs=61.6
Q ss_pred hcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHH
Q 038490 95 RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKV 174 (344)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 174 (344)
..|.++.|++.|...+..+ ++....|..=..++.+......|++=++......+.+..-|-.--.+....|+|++|...
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 4566777777777777765 555556666666677777777777777666665554444454444555566778888777
Q ss_pred HHHHhhCCCCcCHhh
Q 038490 175 FDEMVKRRLQPTLVT 189 (344)
Q Consensus 175 ~~~~~~~~~~~~~~~ 189 (344)
+....+.+..+....
T Consensus 205 l~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 205 LALACKLDYDEANSA 219 (377)
T ss_pred HHHHHhccccHHHHH
Confidence 777777766554443
No 397
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=67.87 E-value=16 Score=21.92 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 038490 257 DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK 305 (344)
Q Consensus 257 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 305 (344)
....++.++..+++-.-.++++..+.+....|. .+..+|.--++.+++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 334445555555555555555555555555443 234444444444433
No 398
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=67.75 E-value=22 Score=21.02 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=10.8
Q ss_pred HHHHHHHhhchHHHHHHHHHHH
Q 038490 192 TLIYGLCLELRVDEALKLKEDI 213 (344)
Q Consensus 192 ~l~~~~~~~~~~~~a~~~~~~~ 213 (344)
.++.++...|++++|.+++.++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3445555555555555555444
No 399
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=67.48 E-value=13 Score=30.14 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=19.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCCC
Q 038490 296 YNALISGFCKEEDFEAAFTILDEMGDKGCK 325 (344)
Q Consensus 296 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 325 (344)
|+..|....+.||+++|++++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 456666666666666666666666666654
No 400
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=66.96 E-value=40 Score=23.46 Aligned_cols=43 Identities=12% Similarity=0.010 Sum_probs=35.6
Q ss_pred HHHHHHHHHhccCC--CCcccHHHHHHHHHhhCChhHHHHHHHHH
Q 038490 136 RMKELFQIMEKYVS--PDACSYNILIHGCVVSRRLEDAWKVFDEM 178 (344)
Q Consensus 136 ~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (344)
.+..+|..|...+. .....|......+...|++++|.++|+.-
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 88999999987665 56677888999999999999999999763
No 401
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.57 E-value=63 Score=25.54 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=55.7
Q ss_pred HHhhCChhHHHHHHHHHhhCCCCcCH-hhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCh
Q 038490 162 CVVSRRLEDAWKVFDEMVKRRLQPTL-VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ-VFASLIKGLCAVGEL 239 (344)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 239 (344)
|.....++.|...|.+.... .|+. .-|+.-+..+.+..+++.+..--.+.++ +.|+.. ....+-.+......+
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq---l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ---LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh---cChHHHHHHHHHHHHHHhhccc
Confidence 33444566666655555543 4444 2334444455556666665554444332 244432 233334444555666
Q ss_pred HHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHH
Q 038490 240 SLALGVKEEMVR----DKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283 (344)
Q Consensus 240 ~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 283 (344)
+.|+..+.+... ..+++-......|..+--..-...+..++.++
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 666666666532 23333344444444443333333344444443
No 402
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.52 E-value=95 Score=27.62 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCC
Q 038490 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKP 291 (344)
Q Consensus 258 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 291 (344)
...+..++.+....+....|+.++.++.+.|..|
T Consensus 248 ~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~ 281 (484)
T PRK14956 248 IEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDI 281 (484)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCH
Confidence 3334444444444333445666666666666543
No 403
>PRK10941 hypothetical protein; Provisional
Probab=66.12 E-value=70 Score=25.90 Aligned_cols=78 Identities=15% Similarity=0.048 Sum_probs=48.5
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH
Q 038490 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK-IEMDAGIYSSLISALF 269 (344)
Q Consensus 191 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 269 (344)
+.+-.+|.+.++++.|.+..+.++.-. +.+..-+..-.-.|.+.|.+..|..=++...+.- -.|+.......+....
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 345556777788888888887776542 3345555555556777888888877777776543 2345555555555444
Q ss_pred H
Q 038490 270 K 270 (344)
Q Consensus 270 ~ 270 (344)
.
T Consensus 263 ~ 263 (269)
T PRK10941 263 Q 263 (269)
T ss_pred h
Confidence 3
No 404
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=65.84 E-value=44 Score=24.00 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=7.9
Q ss_pred HHHhhCChhHHHHHHHHHhhC
Q 038490 161 GCVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~ 181 (344)
.+.+.++.-.|.++++++.+.
T Consensus 29 ~L~~~~~~~sAeei~~~l~~~ 49 (145)
T COG0735 29 LLLEADGHLSAEELYEELREE 49 (145)
T ss_pred HHHhcCCCCCHHHHHHHHHHh
Confidence 333333333334444443333
No 405
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=65.53 E-value=78 Score=26.23 Aligned_cols=111 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhcCCC---CCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 038490 64 DEMQQILHQLKHDTRI---VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140 (344)
Q Consensus 64 ~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 140 (344)
+.|.+.|+.......- ..++.....++....+.|+.+....+++.... ..+......++.+.+...+.+...++
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHHH
Q ss_pred HHHHhccCCCCcccHHHHHHHHHhhCCh--hHHHHHHHH
Q 038490 141 FQIMEKYVSPDACSYNILIHGCVVSRRL--EDAWKVFDE 177 (344)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~ 177 (344)
++.+.............++.++...+.. +.+.+.+..
T Consensus 224 l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 224 LDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 406
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=65.16 E-value=32 Score=25.44 Aligned_cols=63 Identities=5% Similarity=-0.020 Sum_probs=43.3
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHH
Q 038490 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310 (344)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 310 (344)
+.+...|+..+..= ..++..+...++.-.|.++++.+.+.+...+..|.-.-+..+.+.|-+.
T Consensus 15 ~~L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 15 KLCAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 33455677755443 3555666666777789999999998887777777666667777777654
No 407
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=64.82 E-value=24 Score=20.11 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=10.8
Q ss_pred HHHhccCCHHHHHHHHHHHhh
Q 038490 301 SGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 301 ~~~~~~~~~~~a~~~~~~~~~ 321 (344)
-++.+.|++++|.+..+.+.+
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 344555555555555555554
No 408
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=64.81 E-value=68 Score=29.57 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=63.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhccCC---CCcccHHHHHHHHHhhCChh------HHHHHHHHHhhCCCCcCHhhHHHH
Q 038490 123 TLLNPKLTCGKLDRMKELFQIMEKYVS---PDACSYNILIHGCVVSRRLE------DAWKVFDEMVKRRLQPTLVTFGTL 193 (344)
Q Consensus 123 ~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 193 (344)
+|+.+|...|++..+.++++.+..... .-...+|..++...+.|.++ .|.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 899999999999999999999887654 33456888888899999764 3444454444 45588899888
Q ss_pred HHHHHhhchHHHHHHHHHHHHH
Q 038490 194 IYGLCLELRVDEALKLKEDIMR 215 (344)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~~~~ 215 (344)
+.+....-.-.-...++.+.+.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7765554444444445555443
No 409
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.75 E-value=39 Score=22.45 Aligned_cols=49 Identities=10% Similarity=-0.010 Sum_probs=20.7
Q ss_pred HHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhC
Q 038490 128 KLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (344)
+...|++++|..+.+.+. .||...|.+|.. .+.|-.++....+.+|..+
T Consensus 49 LmNrG~Yq~Al~l~~~~~---~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKLC---YPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHccchHHHHHHhcCCCC---CchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 334455555554443331 244444443322 2344444444444444444
No 410
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=64.69 E-value=41 Score=22.70 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCcCcHHHHHHHHHH
Q 038490 260 IYSSLISALFKAGRKNEFPAILKEMKE 286 (344)
Q Consensus 260 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 286 (344)
-|..|+..|...|..++|.+++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 367777777778888888888777766
No 411
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.62 E-value=92 Score=26.77 Aligned_cols=55 Identities=9% Similarity=-0.080 Sum_probs=37.2
Q ss_pred HHHHhcccHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHH--hcCChHHHHHHHHHHhc
Q 038490 91 GFYGRARLLERALQMFDEMSSFNVQMTVK--FFNTLLNPKL--TCGKLDRMKELFQIMEK 146 (344)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 146 (344)
......+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3445788888899998888876 555544 4444545443 35677888888887654
No 412
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=64.31 E-value=29 Score=30.21 Aligned_cols=103 Identities=13% Similarity=0.064 Sum_probs=56.8
Q ss_pred HHHHHHhcCCchHHHHHHHHhhhcCCCCCchh-HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038490 53 IITKLGRAKMFDEMQQILHQLKHDTRIVPKEI-IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131 (344)
Q Consensus 53 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 131 (344)
-+..+...+.++.|..++.+.++. .|+.. .|..=..++.+.+++..|+.=+..+++.. +.-...|..=..++.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhH
Confidence 344555667777777777777763 45433 33333466667777777777777766654 22233333333444445
Q ss_pred CChHHHHHHHHHHhccCCCCcccHHHHHH
Q 038490 132 GKLDRMKELFQIMEKYVSPDACSYNILIH 160 (344)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 160 (344)
+.+.+|...|+...... |+..-...++.
T Consensus 86 ~~~~~A~~~l~~~~~l~-Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLA-PNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHHHHhhhcC-cCcHHHHHHHH
Confidence 55666666666655432 34333333333
No 413
>PRK09462 fur ferric uptake regulator; Provisional
Probab=64.19 E-value=46 Score=23.91 Aligned_cols=62 Identities=8% Similarity=0.104 Sum_probs=37.1
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHc-CCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCH
Q 038490 247 EEMVRDKIEMDAGIYSSLISALFKA-GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309 (344)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 309 (344)
+.+.+.|..++.. -..++..+... +..-.|.++++.+.+.+...+..|.---+..+...|-+
T Consensus 6 ~~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445566664433 33445555554 45778888888888777665666655555666666554
No 414
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.13 E-value=94 Score=26.71 Aligned_cols=55 Identities=11% Similarity=0.134 Sum_probs=29.1
Q ss_pred HHHhcCChHHHHHHHHHHhccCCCCcc--cHHHHHHHHH--hhCChhHHHHHHHHHhhC
Q 038490 127 PKLTCGKLDRMKELFQIMEKYVSPDAC--SYNILIHGCV--VSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 127 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 181 (344)
.+.+.+++..|.++++.+...-+++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344566777777777776664222222 2333334332 344566666666665544
No 415
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.01 E-value=97 Score=26.83 Aligned_cols=154 Identities=10% Similarity=-0.033 Sum_probs=67.2
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCCh
Q 038490 89 VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168 (344)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (344)
.+...+..|+.+.+..+++.-....-..+.. -.+.+...+..|+.+-+..+++.-.....++..-.+. +...+..|+.
T Consensus 71 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tp-Lh~A~~~~~~ 148 (413)
T PHA02875 71 ELHDAVEEGDVKAVEELLDLGKFADDVFYKD-GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSP-LHLAVMMGDI 148 (413)
T ss_pred HHHHHHHCCCHHHHHHHHHcCCcccccccCC-CCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHcCCH
Confidence 3445557777776655554321110000111 1233444556676655544444322111122222333 3444456666
Q ss_pred hHHHHHHHHHhhCCCCcC---HhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCChHHH
Q 038490 169 EDAWKVFDEMVKRRLQPT---LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV---FASLIKGLCAVGELSLA 242 (344)
Q Consensus 169 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a 242 (344)
+-+..+ .+.|..++ ..-.+.+. ..+..|+.+-+..+++ .|..++... ...++...+..|+.+
T Consensus 149 ~~v~~L----l~~g~~~~~~d~~g~TpL~-~A~~~g~~eiv~~Ll~-----~ga~~n~~~~~~~~t~l~~A~~~~~~~-- 216 (413)
T PHA02875 149 KGIELL----IDHKACLDIEDCCGCTPLI-IAMAKGDIAICKMLLD-----SGANIDYFGKNGCVAALCYAIENNKID-- 216 (413)
T ss_pred HHHHHH----HhcCCCCCCCCCCCCCHHH-HHHHcCCHHHHHHHHh-----CCCCCCcCCCCCCchHHHHHHHcCCHH--
Confidence 554433 34444332 22333333 3355666554433332 244444321 123344344556654
Q ss_pred HHHHHHHHHCCCCCCH
Q 038490 243 LGVKEEMVRDKIEMDA 258 (344)
Q Consensus 243 ~~~~~~~~~~~~~~~~ 258 (344)
+.+.+.+.|..++.
T Consensus 217 --iv~~Ll~~gad~n~ 230 (413)
T PHA02875 217 --IVRLFIKRGADCNI 230 (413)
T ss_pred --HHHHHHHCCcCcch
Confidence 44555666766654
No 416
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.96 E-value=1.3e+02 Score=28.33 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=25.3
Q ss_pred HHHHHHHHhccCCHHHHHHHH-HHHhh-------CCCCCChhhHHHHHHHHhh
Q 038490 296 YNALISGFCKEEDFEAAFTIL-DEMGD-------KGCKANPISYNVILGGLCK 340 (344)
Q Consensus 296 ~~~l~~~~~~~~~~~~a~~~~-~~~~~-------~~~~p~~~~~~~ll~~~~~ 340 (344)
|..++-.+.+.|+..+|+.+. +++.+ -.-.-|...|..||.-+..
T Consensus 650 ~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~D~eLWe~LI~~~ld 702 (846)
T KOG2066|consen 650 YEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQDDSELWEDLINYSLD 702 (846)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHHHHHHhhc
Confidence 455566666777776666542 22211 0113477788888876543
No 417
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=63.92 E-value=93 Score=26.84 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhccCC---CCcccHHHHHHHHHhhCChhHHHHHHHHHh
Q 038490 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVS---PDACSYNILIHGCVVSRRLEDAWKVFDEMV 179 (344)
Q Consensus 121 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (344)
...|++.+.-.||.....+.++.+...-. |....-.-+.-+|...|++.+|.++|-...
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 44566777778887776666666654322 222222445667778888888888887664
No 418
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.35 E-value=1.2e+02 Score=27.55 Aligned_cols=137 Identities=9% Similarity=0.014 Sum_probs=80.7
Q ss_pred CcchhhHHHHHHHHHhcCCchHHHHHHHHhh-------hcC------------CCCCchhHHHHH---HHHHHhcccHHH
Q 038490 44 RYNLLHYDLIITKLGRAKMFDEMQQILHQLK-------HDT------------RIVPKEIIFCNV---IGFYGRARLLER 101 (344)
Q Consensus 44 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~------------~~~~~~~~~~~l---~~~~~~~~~~~~ 101 (344)
|.-+.+...+...+...|+.+.+.+++++.. .-. -.+-|...|-++ |....+.|.+..
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT 360 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT 360 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Confidence 4566667777788888888888777766543 110 011122333332 455677888888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHhccCC---CCcccHH-HHHHHHHhhCC---hhHHHH
Q 038490 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKL-TCGKLDRMKELFQIMEKYVS---PDACSYN-ILIHGCVVSRR---LEDAWK 173 (344)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~---~~~~~~~-~l~~~~~~~~~---~~~a~~ 173 (344)
|.++...+.+....-|+.....+|+.|+ +..+++-.+++++..+.... .....|. ++...|..... -+.|..
T Consensus 361 A~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~ 440 (665)
T KOG2422|consen 361 ALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALN 440 (665)
T ss_pred HHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHH
Confidence 8888888888764446777777777665 45677777777777754433 2233344 34444443333 234444
Q ss_pred HHHHHhh
Q 038490 174 VFDEMVK 180 (344)
Q Consensus 174 ~~~~~~~ 180 (344)
.+.++..
T Consensus 441 ~l~qAl~ 447 (665)
T KOG2422|consen 441 ALLQALK 447 (665)
T ss_pred HHHHHHH
Confidence 4444433
No 419
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.09 E-value=38 Score=21.76 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=7.4
Q ss_pred HcCCcCcHHHHHHHHH
Q 038490 270 KAGRKNEFPAILKEMK 285 (344)
Q Consensus 270 ~~g~~~~a~~~~~~~~ 285 (344)
..|+.+.|.+++..+.
T Consensus 48 ~~g~~~~ar~LL~~L~ 63 (88)
T cd08819 48 NHGNESGARELLKRIV 63 (88)
T ss_pred ccCcHHHHHHHHHHhc
Confidence 3344444444444444
No 420
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=63.00 E-value=39 Score=21.86 Aligned_cols=28 Identities=18% Similarity=-0.044 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 038490 84 IIFCNVIGFYGRARLLERALQMFDEMSS 111 (344)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 111 (344)
.....+...+...|++++|++.+-.+.+
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444555555555554444443
No 421
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.83 E-value=74 Score=25.09 Aligned_cols=204 Identities=8% Similarity=-0.001 Sum_probs=0.0
Q ss_pred chhhhhhhhcccCC-------chHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 038490 4 SSIRLACLPRLQKD-------PKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD 76 (344)
Q Consensus 4 ~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 76 (344)
.+...+....+.|+ +-+|..-|++..+.. -+.....-|..|...|++..|-.....+-+.
T Consensus 56 aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~e-------------Av~cL~~aieIyt~~Grf~~aAk~~~~iaEi 122 (288)
T KOG1586|consen 56 AFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEE-------------AVNCLEKAIEIYTDMGRFTMAAKHHIEIAEI 122 (288)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHH-------------HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHH
Q ss_pred CCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHH
Q 038490 77 TRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYN 156 (344)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (344)
+..+..-+...|..|-..+++-...+.-...-+ .+.-+...-+..+++.+|..+|+++......+...-.
T Consensus 123 --yEsdl~d~ekaI~~YE~Aae~yk~ees~ssANK--------C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 123 --YESDLQDFEKAIAHYEQAAEYYKGEESVSSANK--------CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred --HhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Q ss_pred HHHHHHHhhC-------ChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038490 157 ILIHGCVVSR-------RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229 (344)
Q Consensus 157 ~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 229 (344)
.+=..+.+.| +.-.+...+++..+........-=..++.-+...-+-.....+-+.+.+-..+.+-......+
T Consensus 193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsisrLD~W~tti 272 (288)
T KOG1586|consen 193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRLDQWKTTI 272 (288)
T ss_pred HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchHHHHHHHH
Q ss_pred H
Q 038490 230 I 230 (344)
Q Consensus 230 ~ 230 (344)
+
T Consensus 273 L 273 (288)
T KOG1586|consen 273 L 273 (288)
T ss_pred H
No 422
>PRK09857 putative transposase; Provisional
Probab=62.48 E-value=87 Score=25.74 Aligned_cols=66 Identities=15% Similarity=0.247 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC
Q 038490 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN 327 (344)
Q Consensus 261 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 327 (344)
+..++......++.++..++++.+.+. .++......++..-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 345555555666666667777666554 222333444556666666766777888888888777654
No 423
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.65 E-value=40 Score=21.63 Aligned_cols=12 Identities=17% Similarity=-0.056 Sum_probs=5.0
Q ss_pred chHHHHHHHHHH
Q 038490 201 LRVDEALKLKED 212 (344)
Q Consensus 201 ~~~~~a~~~~~~ 212 (344)
|+.+.|.+++..
T Consensus 50 g~~~~ar~LL~~ 61 (88)
T cd08819 50 GNESGARELLKR 61 (88)
T ss_pred CcHHHHHHHHHH
Confidence 344444444443
No 424
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.45 E-value=1.2e+02 Score=27.04 Aligned_cols=75 Identities=8% Similarity=0.023 Sum_probs=37.7
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccC--------------CCCcccHHHHHHHHHhhCChhHHHHHHHH
Q 038490 112 FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV--------------SPDACSYNILIHGCVVSRRLEDAWKVFDE 177 (344)
Q Consensus 112 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 177 (344)
.|+..+......++. ...|+...|+.+++.+.... ..+......++......+....|+.++++
T Consensus 196 Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~ 273 (484)
T PRK14956 196 ENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILES 273 (484)
T ss_pred cCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 344444444444443 23466666666665543211 12222233344443333345677888888
Q ss_pred HhhCCCCcCHh
Q 038490 178 MVKRRLQPTLV 188 (344)
Q Consensus 178 ~~~~~~~~~~~ 188 (344)
+.+.|..|...
T Consensus 274 l~~~G~d~~~~ 284 (484)
T PRK14956 274 LYQEGQDIYKF 284 (484)
T ss_pred HHHcCCCHHHH
Confidence 88777665543
No 425
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.18 E-value=1.2e+02 Score=26.93 Aligned_cols=109 Identities=12% Similarity=-0.079 Sum_probs=66.8
Q ss_pred HHHHhhCChhHHHHHHHHHhh---CCCCcC-----HhhHHHHHHHHHhhchHHHHHHHHHHHHH------hcCCCCCH--
Q 038490 160 HGCVVSRRLEDAWKVFDEMVK---RRLQPT-----LVTFGTLIYGLCLELRVDEALKLKEDIMR------VYNVKPDG-- 223 (344)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~-- 223 (344)
..+.-.|++.+|.+++...-- .|...+ -..++.+...+.+.|.+..+..+|...++ ..|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 345567899999888765421 221112 12235555555667777777777777664 12444321
Q ss_pred ---------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 038490 224 ---------QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270 (344)
Q Consensus 224 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 270 (344)
.+||. .-.|...|++-.|.+.|.+....- .-++..|--|..+|.-
T Consensus 328 tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~vf-h~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHVF-HRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHH
Confidence 23433 334667889999999888887653 3378888888888754
No 426
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=60.92 E-value=1.4e+02 Score=27.67 Aligned_cols=185 Identities=12% Similarity=0.040 Sum_probs=107.3
Q ss_pred hHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHH-hcCCchHHHHHHHHhhhcCCCCCchh-----HHHHHHHH
Q 038490 19 KLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLG-RAKMFDEMQQILHQLKHDTRIVPKEI-----IFCNVIGF 92 (344)
Q Consensus 19 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~ 92 (344)
..|++.++.+.++.. .+......++..+...+. ...+++.|+..+++...... .++-. ....++..
T Consensus 38 ~~ai~CL~~~~~~~~-------l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~-~~~~~d~k~~~~~ll~~i 109 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFK-------LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCE-RHRLTDLKFRCQFLLARI 109 (608)
T ss_pred HHHHHHHHHHhccCC-------CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHH
Confidence 345666666543321 222335666777777776 67899999999998754321 12211 12245666
Q ss_pred HHhcccHHHHHHHHHHHHhcC----CCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHhccCC----CCcccHHHHHHHHH
Q 038490 93 YGRARLLERALQMFDEMSSFN----VQMTVKFFNTL-LNPKLTCGKLDRMKELFQIMEKYVS----PDACSYNILIHGCV 163 (344)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~ 163 (344)
+.+.+... |.+..++.++.- ..+-...+..+ +..+...++...|.+.++.+..... +....+-.++.+..
T Consensus 110 ~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l 188 (608)
T PF10345_consen 110 YFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL 188 (608)
T ss_pred HHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence 66666666 988888876532 12233344444 3333344799999999988765432 33334444444433
Q ss_pred --hhCChhHHHHHHHHHhhCC---------CCcCHhhHHHHHHHHH--hhchHHHHHHHHHH
Q 038490 164 --VSRRLEDAWKVFDEMVKRR---------LQPTLVTFGTLIYGLC--LELRVDEALKLKED 212 (344)
Q Consensus 164 --~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~ 212 (344)
+.+..+++.+.++++.... ..|...+|..+++.++ ..|+++.+...+++
T Consensus 189 ~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 189 HLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred HhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555677777777764321 2345666777766554 45666666655544
No 427
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=60.35 E-value=69 Score=26.35 Aligned_cols=70 Identities=11% Similarity=0.144 Sum_probs=53.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhc----------cCCHHHH
Q 038490 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK----------EEDFEAA 312 (344)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~~~~~~a 312 (344)
.++++.+.+.++.|.-..+..+.-.+.+.=.+.+.+.+|+.+... ..-|..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467888888899999999988888889988999999999998873 3336666666653 4666666
Q ss_pred HHHHH
Q 038490 313 FTILD 317 (344)
Q Consensus 313 ~~~~~ 317 (344)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 66554
No 428
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=60.10 E-value=68 Score=23.75 Aligned_cols=64 Identities=9% Similarity=0.064 Sum_probs=41.0
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCc
Q 038490 212 DIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276 (344)
Q Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 276 (344)
++++..|+..+..-. .++..+...++.-.|.++++.+.+.++.++..|.---+..+.+.|-+.+
T Consensus 15 ~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 15 KLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 334555666665433 3444444556666788888888888777777666666777777775543
No 429
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=59.38 E-value=46 Score=21.52 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC--CCcccHHHHHHHHHhhCC
Q 038490 115 QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PDACSYNILIHGCVVSRR 167 (344)
Q Consensus 115 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 167 (344)
+.|......+...+...|+++.|++.+-.+.+... .+...-..|+..+...|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 44556666666677777777777776666665543 334444555555554444
No 430
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.19 E-value=52 Score=22.15 Aligned_cols=82 Identities=10% Similarity=-0.003 Sum_probs=46.5
Q ss_pred hcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHH
Q 038490 95 RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKV 174 (344)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 174 (344)
.....++|..+.+-+...+ .....+--.-+..+.+.|++++| +..-.....||...|.+|.. .+.|--+++...
T Consensus 18 G~HcH~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 4556788888888887765 22222333334556778888888 22222223366666655543 467777777888
Q ss_pred HHHHhhCC
Q 038490 175 FDEMVKRR 182 (344)
Q Consensus 175 ~~~~~~~~ 182 (344)
+.++..+|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 87776664
No 431
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.77 E-value=2e+02 Score=28.77 Aligned_cols=163 Identities=16% Similarity=0.127 Sum_probs=88.8
Q ss_pred hhhhhhcccCCchHHhhhhcCCCCCCCCCCC-------------CC---CCCCCcc--hhhHHHHHHHHHhcCCchHHHH
Q 038490 7 RLACLPRLQKDPKLALQLFKNPNPNPNDTEA-------------HP---LKPFRYN--LLHYDLIITKLGRAKMFDEMQQ 68 (344)
Q Consensus 7 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------~~---~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~ 68 (344)
.++..+...|.+-+|+..|.+....-..... .- ..+-.+. ..-|..+++.+-+.+..+.+.+
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQ 1004 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQ 1004 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 4555677888888888888776331110000 00 0011112 4456677777777777777777
Q ss_pred HHHHhhhcCCCCCc----hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCChHH----
Q 038490 69 ILHQLKHDTRIVPK----EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV----KFFNTLLNPKLTCGKLDR---- 136 (344)
Q Consensus 69 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~---- 136 (344)
+-....+. ++++ ..+++.+.+.....|.+-+|....-. .||. .....++-.+..+|.++.
T Consensus 1005 lA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlvivLfecg~l~~L~~f 1076 (1480)
T KOG4521|consen 1005 LAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLVIVLFECGELEALATF 1076 (1480)
T ss_pred HHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHhccchHHHhhC
Confidence 77666653 2222 23455566666666666665544432 2332 344555666666665433
Q ss_pred --------HHH-HHHHHhccCC-CCcccHHHHHHHHHhhCChhHHHHHHHH
Q 038490 137 --------MKE-LFQIMEKYVS-PDACSYNILIHGCVVSRRLEDAWKVFDE 177 (344)
Q Consensus 137 --------a~~-~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 177 (344)
... +++..-+..+ .....|+.|-.-+...+++.+|-.+.-+
T Consensus 1077 pfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1077 PFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred CccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
Confidence 222 2232222222 4455666676777777788777666544
No 432
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.46 E-value=1.2e+02 Score=26.12 Aligned_cols=64 Identities=11% Similarity=0.164 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcc
Q 038490 84 IIFCNVIGFYGRARLLERALQMFDEMSSFN--VQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY 147 (344)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 147 (344)
..+.-+...|..+|+++.|++.|.+...-- .+-.+..|..+|..-.-.|+|.....+..+..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 456667788888999999999998855421 1223456667777777788888888777777654
No 433
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=58.20 E-value=20 Score=17.01 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=11.3
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038490 98 LLERALQMFDEMSSFNVQMTVKFFNTL 124 (344)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~l 124 (344)
+.+.|..+|+.+.... +-+...|...
T Consensus 2 ~~~~~r~i~e~~l~~~-~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKF-PKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHC-CCChHHHHHH
Confidence 3444555555554432 2333444433
No 434
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=58.08 E-value=1.2e+02 Score=25.97 Aligned_cols=185 Identities=12% Similarity=0.104 Sum_probs=107.2
Q ss_pred cCCchHHHHHHHHhhhcC----CCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHh----
Q 038490 60 AKMFDEMQQILHQLKHDT----RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS-FNVQMTVKFFNTLLNPKLT---- 130 (344)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~---- 130 (344)
.++.+.|.+-+-...+.. ....+..++..+++.|...++|+.--+....+.+ +| .. ..+...+++-+..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrg-ql-k~ai~~Mvq~~~~y~~~ 102 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRG-QL-KQAIQSMVQQAMTYIDG 102 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh-HH-HHHHHHHHHHHHHhccC
Confidence 556666666555444321 2344566777888999999998877665555543 33 21 2222333332221
Q ss_pred cCChHHHHHHHHHHh---ccCC----CCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHH----------
Q 038490 131 CGKLDRMKELFQIME---KYVS----PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTL---------- 193 (344)
Q Consensus 131 ~~~~~~a~~~~~~~~---~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------- 193 (344)
..+.+.-..+.+.++ +... .....-..|...+-..|+.++|..++.+.. +.||..+
T Consensus 103 ~~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiL 175 (439)
T KOG1498|consen 103 TPDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFIL 175 (439)
T ss_pred CCCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHH
Confidence 122233333333332 2111 122233556777888999999999987753 3333322
Q ss_pred --HHHHHhhchHHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 038490 194 --IYGLCLELRVDEALKLKEDIMRVYNVKPDG-----QVFASLIKGLCAVGELSLALGVKEEMVRDK 253 (344)
Q Consensus 194 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 253 (344)
++.|...+++-.|--+-+.+....=-.|+. .-|+.+++.....+.+=.+-+.|+.+...|
T Consensus 176 EQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~ 242 (439)
T KOG1498|consen 176 EQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTG 242 (439)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhccc
Confidence 456777888888877776654443334443 247788887777888888888888877643
No 435
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=57.67 E-value=27 Score=23.69 Aligned_cols=48 Identities=8% Similarity=0.117 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHH
Q 038490 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFE 310 (344)
Q Consensus 263 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 310 (344)
.++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 345555566666778888888877776666666555566666666543
No 436
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=57.64 E-value=99 Score=24.86 Aligned_cols=61 Identities=10% Similarity=-0.044 Sum_probs=30.5
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038490 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKP-----DGQVFASLIKGLCAVGELSLALGVKEEMVRD 252 (344)
Q Consensus 192 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (344)
.++..|.+.|+.+.|-.++--+....+... +...-..++......++++.|.++.+-+...
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKAL 249 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 344555556666655555443222111111 2223334455556667777777766666554
No 437
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=57.12 E-value=31 Score=30.07 Aligned_cols=105 Identities=16% Similarity=0.079 Sum_probs=65.3
Q ss_pred HHHHHhhchHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 038490 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQ-VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG 272 (344)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 272 (344)
+..+.+.+.++.|..++.++++. .|+.. .|..-..++.+.+++..|+.=+....+..+. ....|-.=..++...+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHH
Confidence 34456677888888888887754 45433 3444446777888888888777777766422 2233333334555556
Q ss_pred CcCcHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 038490 273 RKNEFPAILKEMKERGCKPNSVTYNALISGFC 304 (344)
Q Consensus 273 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 304 (344)
.+.+|...|+..... .|+..-....+.-|-
T Consensus 87 ~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKL--APNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHhhhc--CcCcHHHHHHHHHHH
Confidence 666677776666553 667666666665553
No 438
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.08 E-value=1.3e+02 Score=27.69 Aligned_cols=87 Identities=11% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHhhchHHHHHHHHHHHHHhcCCCCCHHH------HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 038490 197 LCLELRVDEALKLKEDIMRVYNVKPDGQV------FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270 (344)
Q Consensus 197 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 270 (344)
..+..++..+.+.|..-++ -++.|... ...|.-+|.+..+.+.|.+++++..+.+.. ++.+--.+..++..
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~--~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~ 440 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLK--DIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLA 440 (872)
T ss_pred HHHHHHHHHHHHHHHHHHH--hccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHH
Q ss_pred cCCcCcHHHHHHHHHH
Q 038490 271 AGRKNEFPAILKEMKE 286 (344)
Q Consensus 271 ~g~~~~a~~~~~~~~~ 286 (344)
.|..++|+........
T Consensus 441 E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 441 EDKSEEALTCLQKIKS 456 (872)
T ss_pred hcchHHHHHHHHHHHh
No 439
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=56.70 E-value=94 Score=24.29 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=12.8
Q ss_pred HHHHHHhcccHHHHHHHHHHHH
Q 038490 89 VIGFYGRARLLERALQMFDEMS 110 (344)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~ 110 (344)
-|......|+.++|.+....+.
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhC
Confidence 3444556666666666665554
No 440
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=56.56 E-value=1.3e+02 Score=25.74 Aligned_cols=136 Identities=9% Similarity=0.004 Sum_probs=84.2
Q ss_pred CCchhHHHHHHHHHHhcccHHHHHHHHHHHHh-------cCC------------------CCCHHHHHH---HHHHHHhc
Q 038490 80 VPKEIIFCNVIGFYGRARLLERALQMFDEMSS-------FNV------------------QMTVKFFNT---LLNPKLTC 131 (344)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~------------------~~~~~~~~~---l~~~~~~~ 131 (344)
+-...++..+...+.++|+.+.|.+++++.+- ..+ .-|...|.+ .+..+.+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 44566677777778888887777776666530 011 123334443 34567788
Q ss_pred CChHHHHHHHHHHhccCCC-CcccHHHHHHHHH-hhCChhHHHHHHHHHhhCCCC-----cCHhhHHHHHHHHHhhchH-
Q 038490 132 GKLDRMKELFQIMEKYVSP-DACSYNILIHGCV-VSRRLEDAWKVFDEMVKRRLQ-----PTLVTFGTLIYGLCLELRV- 203 (344)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~- 203 (344)
|.+..|.++.+-+....+. |+.....+|+.|+ +.++++--+++.+.......+ .....|+..+ ++...++.
T Consensus 117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aL-A~~~l~~~~ 195 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIAL-AYFRLEKEE 195 (360)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHH-HHHHhcCcc
Confidence 8999999999888888774 7777777777764 667787777777776542000 1134455555 33334444
Q ss_pred --------------HHHHHHHHHHHHh
Q 038490 204 --------------DEALKLKEDIMRV 216 (344)
Q Consensus 204 --------------~~a~~~~~~~~~~ 216 (344)
+.|...+.+++..
T Consensus 196 ~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 196 SSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred ccccccccccccchhHHHHHHHHHHHH
Confidence 6777777666543
No 441
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=56.16 E-value=85 Score=23.65 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHCCCCCC--HHH-----HHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 038490 239 LSLALGVKEEMVRDKIEMD--AGI-----YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306 (344)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~--~~~-----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 306 (344)
++.|+.+++.+.+.-..|+ ... -...+..|.+.|.+++|.+++++.... |+......-+....+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHc
Confidence 4566666666665433221 111 123445677788888888888777663 3444434333333333
No 442
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.68 E-value=1.6e+02 Score=28.36 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=23.2
Q ss_pred hcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 038490 95 RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145 (344)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 145 (344)
..|+.+.|++.-..+ -+..+|..|.....+.|+.+-|+..|++.+
T Consensus 655 e~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred hcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 445555555444332 233455555555555555555555555544
No 443
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.54 E-value=61 Score=21.45 Aligned_cols=48 Identities=10% Similarity=0.069 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcc
Q 038490 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY 147 (344)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 147 (344)
...++.+++....+....+-....|--.|++.|+.+.|.+-|+.=+..
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKal 101 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKAL 101 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhh
Confidence 334445555554442222223344445566666666666666655443
No 444
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=54.39 E-value=1.8e+02 Score=26.76 Aligned_cols=78 Identities=17% Similarity=0.121 Sum_probs=34.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 038490 243 LGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322 (344)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 322 (344)
....+.+...-+-.+...-.-++..|.+.|-.+.|.++.+.+-.+-. ...-|..-+..+.+.|+...+..+.+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~ 467 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEE 467 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34444444433334556667788888888888888888876644422 2344666667777888877777766666543
No 445
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.28 E-value=1.1e+02 Score=24.54 Aligned_cols=83 Identities=13% Similarity=0.038 Sum_probs=41.9
Q ss_pred CCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038490 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229 (344)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 229 (344)
.++.....+...|.+.|++.+|...|-.- -.++...+..++..+...|...+ ++...-.+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~~~~~~~~~ll~~~~~~~~~~e---------------~dlfi~Ra- 147 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG----TDPSAFAYVMLLEEWSTKGYPSE---------------ADLFIARA- 147 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS-----------------HHHHHHHH-
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc----CChhHHHHHHHHHHHHHhcCCcc---------------hhHHHHHH-
Confidence 56677788888888888888877666321 12223222223322222222111 12222222
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC
Q 038490 230 IKGLCAVGELSLALGVKEEMVRD 252 (344)
Q Consensus 230 ~~~~~~~~~~~~a~~~~~~~~~~ 252 (344)
+-.|...++...|...++...+.
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 33456678888888877776654
No 446
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=53.93 E-value=59 Score=21.10 Aligned_cols=23 Identities=30% Similarity=0.255 Sum_probs=14.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 038490 229 LIKGLCAVGELSLALGVKEEMVR 251 (344)
Q Consensus 229 l~~~~~~~~~~~~a~~~~~~~~~ 251 (344)
+.......|++++|...+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33445566777777777766654
No 447
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=53.93 E-value=97 Score=26.82 Aligned_cols=59 Identities=17% Similarity=0.075 Sum_probs=32.3
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHhc-----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038490 192 TLIYGLCLELRVDEALKLKEDIMRVY-----NVKP-DGQVFASLIKGLCAVGELSLALGVKEEMV 250 (344)
Q Consensus 192 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 250 (344)
.+++..+-.|++..|+++++.+--.. .+++ ...++--+.-+|.-.+++.+|.+.|..+.
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677777777765531100 0111 22344455556666677777777776665
No 448
>PRK11619 lytic murein transglycosylase; Provisional
Probab=52.82 E-value=2e+02 Score=26.95 Aligned_cols=182 Identities=7% Similarity=-0.054 Sum_probs=98.6
Q ss_pred cCCchHHHHHHHHhhhcCCCCCch--hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHH
Q 038490 60 AKMFDEMQQILHQLKHDTRIVPKE--IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRM 137 (344)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 137 (344)
..+.+.|..++.......+..+.. .+...+.......+..+++...++...... .+......-+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345677888888765443333322 222333333333322456666666544332 2444455555566678888888
Q ss_pred HHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhC------------CCCcC------Hhh--------HH
Q 038490 138 KELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR------------RLQPT------LVT--------FG 191 (344)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~~------~~~--------~~ 191 (344)
...+..|.........-..=+.+++...|+.++|...|+.+... |.+++ ... -.
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~ 411 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEM 411 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHH
Confidence 88888875433333333444566666788888888888876331 11100 000 01
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 038490 192 TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247 (344)
Q Consensus 192 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 247 (344)
.-+..+...|....|...+..+.+. .+......+.....+.|..+.+.....
T Consensus 412 ~ra~~L~~~g~~~~a~~ew~~~~~~----~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 412 ARVRELMYWNMDNTARSEWANLVAS----RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 1123445567777777777775542 233444555555556676666655443
No 449
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=52.80 E-value=65 Score=21.76 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=38.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCc
Q 038490 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276 (344)
Q Consensus 228 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 276 (344)
.++..+...+..-.|.++++.+.+.+..++..|.--.++.+.+.|-..+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 4556666667777899999999998877788887778888888887654
No 450
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.80 E-value=1.8e+02 Score=26.22 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=37.9
Q ss_pred hhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCC------------CCHHHHHHHHHHHHhcCChHHHHHHH
Q 038490 179 VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK------------PDGQVFASLIKGLCAVGELSLALGVK 246 (344)
Q Consensus 179 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~a~~~~ 246 (344)
.+.|+..+......++.. ..|+...|..+++++....+-. ++......++.+. ..++.+.+..++
T Consensus 192 ~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al-~~~d~~~~l~~~ 268 (509)
T PRK14958 192 KEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEAL-AAKAGDRLLGCV 268 (509)
T ss_pred HHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 344666565555544433 3577777777776654321111 1111222333332 335666666666
Q ss_pred HHHHHCCCCC
Q 038490 247 EEMVRDKIEM 256 (344)
Q Consensus 247 ~~~~~~~~~~ 256 (344)
+.+...|..|
T Consensus 269 ~~l~~~g~~~ 278 (509)
T PRK14958 269 TRLVEQGVDF 278 (509)
T ss_pred HHHHHcCCCH
Confidence 6666666554
No 451
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=51.17 E-value=53 Score=27.02 Aligned_cols=80 Identities=13% Similarity=0.073 Sum_probs=59.7
Q ss_pred CCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHH-HHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHH
Q 038490 43 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN-VIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121 (344)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 121 (344)
+..|+..|...+....+.|.+.+...++.+..... +.|...|.. .-.-+...++++.+..+|..-++.+ +.++..|
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh--P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N-~~~p~iw 179 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH--PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN-SRSPRIW 179 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCceeeeeeccchhhhhccHHHHHHHHHhhhccC-CCCchHH
Confidence 45688899999988888999999999999998863 555555543 2334556789999999999988877 5555555
Q ss_pred HHHH
Q 038490 122 NTLL 125 (344)
Q Consensus 122 ~~l~ 125 (344)
....
T Consensus 180 ~eyf 183 (435)
T COG5191 180 IEYF 183 (435)
T ss_pred HHHH
Confidence 5443
No 452
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=50.71 E-value=77 Score=21.52 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=24.8
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038490 89 VIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126 (344)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 126 (344)
+++...++...++|+++.+-|.+.| ..+...-+.|-.
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~ 103 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRS 103 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 5566667777888888888888777 555554444433
No 453
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.49 E-value=1.6e+02 Score=25.14 Aligned_cols=139 Identities=9% Similarity=0.033 Sum_probs=91.7
Q ss_pred CCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcC------CC------------------CCchhHHHH---HHHHHHh
Q 038490 43 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT------RI------------------VPKEIIFCN---VIGFYGR 95 (344)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~------------------~~~~~~~~~---l~~~~~~ 95 (344)
.|.-+.++..+...+.+.|+.+.|.+++++..-.. .+ .-|...|.+ -|..+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 34477888889999999999999988887753110 01 113334444 4567889
Q ss_pred cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHhccCC------CCcccHHHHHHHHHhhCC-
Q 038490 96 ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL-TCGKLDRMKELFQIMEKYVS------PDACSYNILIHGCVVSRR- 167 (344)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~- 167 (344)
.|.+..|.++.+.+...+..-|+......|+.|+ +.++++-..++.+....... .....|+..+..+...+.
T Consensus 116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~ 195 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEE 195 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCcc
Confidence 9999999999999999874447777777777665 56788888888877654211 123445544444443332
Q ss_pred -------------hhHHHHHHHHHhhC
Q 038490 168 -------------LEDAWKVFDEMVKR 181 (344)
Q Consensus 168 -------------~~~a~~~~~~~~~~ 181 (344)
.+.|...+.+....
T Consensus 196 ~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 196 SSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred ccccccccccccchhHHHHHHHHHHHH
Confidence 26677776666544
No 454
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=49.99 E-value=33 Score=17.14 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHH
Q 038490 308 DFEAAFTILDEMGDKGCKANPISYNVI 334 (344)
Q Consensus 308 ~~~~a~~~~~~~~~~~~~p~~~~~~~l 334 (344)
.++.|..+|++.... .|++.+|...
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHHH
Confidence 356777777777763 4666666543
No 455
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=49.76 E-value=1.2e+02 Score=23.65 Aligned_cols=62 Identities=18% Similarity=0.196 Sum_probs=33.3
Q ss_pred CCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCc---CHhhH--HHHHHHHHhhchHHHHHHHHHHH
Q 038490 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP---TLVTF--GTLIYGLCLELRVDEALKLKEDI 213 (344)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~~~~~~a~~~~~~~ 213 (344)
....-+|.|+--|.-...+.+|.+.|.. ..|+.| |..++ ..-+......|+.+.|+....++
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHh
Confidence 3344455555555544445555555543 233433 23332 23455667778888888777774
No 456
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=49.15 E-value=89 Score=21.80 Aligned_cols=41 Identities=15% Similarity=0.320 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHH
Q 038490 102 ALQMFDEMSSFNVQMTV-KFFNTLLNPKLTCGKLDRMKELFQ 142 (344)
Q Consensus 102 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~ 142 (344)
...+|..|.+.||-... ..|......+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566666665544332 345555555666666666666654
No 457
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=49.10 E-value=64 Score=22.04 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=20.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 038490 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273 (344)
Q Consensus 229 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 273 (344)
++......+..-.|.++++.+.+.+...+..|.---+..+.+.|-
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 344444444455555555555555544444444344444444443
No 458
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=49.05 E-value=57 Score=22.29 Aligned_cols=44 Identities=16% Similarity=0.040 Sum_probs=23.5
Q ss_pred HHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhh
Q 038490 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE 200 (344)
Q Consensus 157 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 200 (344)
.++......+..-.|.++++.+.+.+...+..|.-..+..+.+.
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 55 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEA 55 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHC
Confidence 34555555555666666666666666555555444444444443
No 459
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.00 E-value=1.6e+02 Score=28.42 Aligned_cols=75 Identities=9% Similarity=0.050 Sum_probs=43.5
Q ss_pred hhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHH
Q 038490 8 LACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFC 87 (344)
Q Consensus 8 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (344)
++..+.+.|-++-|+.+.+.-..+ ...+...|+++.|++.-.++ .+..+|.
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tR----------------------F~LaLe~gnle~ale~akkl-------dd~d~w~ 676 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTR----------------------FELALECGNLEVALEAAKKL-------DDKDVWE 676 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchh----------------------eeeehhcCCHHHHHHHHHhc-------CcHHHHH
Confidence 444555666666666666443211 12345566777666654443 2445666
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHh
Q 038490 88 NVIGFYGRARLLERALQMFDEMSS 111 (344)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~ 111 (344)
.|.....++|+.+-|+..|+....
T Consensus 677 rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 677 RLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HHHHHHHHhcchHHHHHHHHHhhh
Confidence 777777777777777766666553
No 460
>PRK09462 fur ferric uptake regulator; Provisional
Probab=48.67 E-value=99 Score=22.20 Aligned_cols=61 Identities=10% Similarity=0.057 Sum_probs=38.5
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcC
Q 038490 214 MRVYNVKPDGQVFASLIKGLCAV-GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275 (344)
Q Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 275 (344)
++..|+..+..-. .++..+... +..-.|.++++.+.+.++..+..|.---+..+...|-+.
T Consensus 8 l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4445666554432 333444443 456678888888888777777777666677777777553
No 461
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=48.52 E-value=2e+02 Score=25.67 Aligned_cols=106 Identities=10% Similarity=0.046 Sum_probs=71.6
Q ss_pred HHHHhcCChHHHHHHHHHHhccCCC---------CcccHHHHHHHHHhhCChhHHHHHHHHHhh-------CCCCcC---
Q 038490 126 NPKLTCGKLDRMKELFQIMEKYVSP---------DACSYNILIHGCVVSRRLEDAWKVFDEMVK-------RRLQPT--- 186 (344)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~--- 186 (344)
+.+.-.|++.+|.+++...-....+ .-..||.|.-.+.+.|.+..+..+|.+... .|.+|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 4455679999999988665322111 223346666666777777777777766653 455543
Q ss_pred --------HhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038490 187 --------LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234 (344)
Q Consensus 187 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 234 (344)
..+|+.-+ .+...|++-.|.+.|....+.. ..++..|-.|..+|.
T Consensus 328 tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHH
Confidence 23455444 5678899999999999877754 677788999988886
No 462
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=48.38 E-value=2.6e+02 Score=26.91 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=44.1
Q ss_pred hHHHHHHHHHh-hCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCC------------CCHHHHHHHHHHHHh
Q 038490 169 EDAWKVFDEMV-KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK------------PDGQVFASLIKGLCA 235 (344)
Q Consensus 169 ~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~ 235 (344)
++..+.++++. ..|+..+......+.. ...|+...++.++++.+...+-. .+...+..++..+ .
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL-~ 257 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL-A 257 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-H
Confidence 44555555544 3456656655554443 34678888888877755432111 1222233333322 3
Q ss_pred cCChHHHHHHHHHHHHCCCC
Q 038490 236 VGELSLALGVKEEMVRDKIE 255 (344)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~~~ 255 (344)
.++..+++.+++++...|..
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 258 AGDGPEILAVADEMALRSLS 277 (830)
T ss_pred cCCHHHHHHHHHHHHHhCCC
Confidence 36666666666666665554
No 463
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=48.18 E-value=48 Score=22.61 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhcCCCC-CHHHHHHH
Q 038490 204 DEALKLKEDIMRVYNVKP-DGQVFASL 229 (344)
Q Consensus 204 ~~a~~~~~~~~~~~~~~~-~~~~~~~l 229 (344)
.++...+.++.+..|+.| +..+--++
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~ 32 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAF 32 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 345555666555566666 44433333
No 464
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=48.07 E-value=52 Score=18.76 Aligned_cols=23 Identities=4% Similarity=0.066 Sum_probs=13.2
Q ss_pred HHHHHHhcCCchHHHHHHHHhhh
Q 038490 53 IITKLGRAKMFDEMQQILHQLKH 75 (344)
Q Consensus 53 l~~~~~~~~~~~~a~~~~~~~~~ 75 (344)
+.-++.+.|++++|.+..+.+.+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 44455666666666666666655
No 465
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=47.92 E-value=1.7e+02 Score=24.62 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=9.5
Q ss_pred HHHHHcCCcCcHHHHHHHHHH
Q 038490 266 SALFKAGRKNEFPAILKEMKE 286 (344)
Q Consensus 266 ~~~~~~g~~~~a~~~~~~~~~ 286 (344)
+.+...|+..++.+.+++..+
T Consensus 123 r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 123 RLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHhcccHHHHHHHHHHHHH
Confidence 334444444444444444433
No 466
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=47.84 E-value=1.4e+02 Score=23.69 Aligned_cols=90 Identities=9% Similarity=0.089 Sum_probs=48.9
Q ss_pred hhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCC-----------CCCHHHHHHHHHH
Q 038490 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNV-----------KPDGQVFASLIKG 232 (344)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~l~~~ 232 (344)
+..+.+--.++.+-....+++-+.....+++ +...|+..+|+.-++.-....|. .|.+.....++..
T Consensus 171 klsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~ 248 (333)
T KOG0991|consen 171 KLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQA 248 (333)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHH
Confidence 3333333334444444445554544444444 34567777777766655443332 3555555555554
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC
Q 038490 233 LCAVGELSLALGVKEEMVRDKIEM 256 (344)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~ 256 (344)
| ..+++++|.+++.++-+.|+.|
T Consensus 249 ~-~~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 249 C-LKRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred H-HhccHHHHHHHHHHHHHcCCCH
Confidence 4 3456777777777777777664
No 467
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.81 E-value=85 Score=21.17 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=25.9
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 038490 294 VTYNALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 294 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
.-|..|+.-|...|..++|++++.++.+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4689999999999999999999999987
No 468
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=47.53 E-value=2.2e+02 Score=25.78 Aligned_cols=87 Identities=13% Similarity=0.160 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----------------CCCCHHHHHHHH
Q 038490 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK----------------IEMDAGIYSSLI 265 (344)
Q Consensus 202 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~~l~ 265 (344)
..++....+....+..++..+......++. ...|++..|...++++...+ -..+......|+
T Consensus 188 s~~el~~~L~~i~~~egi~ie~eAL~~Ia~--~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~ 265 (507)
T PRK06645 188 SFEEIFKLLEYITKQENLKTDIEALRIIAY--KSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFV 265 (507)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHH
Q ss_pred HHHHHcCCcCcHHHHHHHHHHcCCCC
Q 038490 266 SALFKAGRKNEFPAILKEMKERGCKP 291 (344)
Q Consensus 266 ~~~~~~g~~~~a~~~~~~~~~~~~~p 291 (344)
.+..+ |+.++|+.+++++...|..|
T Consensus 266 ~ai~~-~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 266 EYIIH-RETEKAINLINKLYGSSVNL 290 (507)
T ss_pred HHHHc-CCHHHHHHHHHHHHHcCCCH
No 469
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=47.44 E-value=69 Score=21.50 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=10.5
Q ss_pred HHHHHHHhhchHHHHHHHHHH
Q 038490 192 TLIYGLCLELRVDEALKLKED 212 (344)
Q Consensus 192 ~l~~~~~~~~~~~~a~~~~~~ 212 (344)
.++..|...++.++|..-+.+
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHH
Confidence 344455555555555555544
No 470
>PRK09857 putative transposase; Provisional
Probab=47.26 E-value=1.6e+02 Score=24.23 Aligned_cols=26 Identities=8% Similarity=0.014 Sum_probs=10.7
Q ss_pred HHHHHhhCChhHHHHHHHHHhhCCCC
Q 038490 159 IHGCVVSRRLEDAWKVFDEMVKRRLQ 184 (344)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (344)
..-+.+.|.-+++.++..+|...|+.
T Consensus 247 AEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 247 AERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33333334333444444444444433
No 471
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=46.22 E-value=1.5e+02 Score=23.55 Aligned_cols=41 Identities=10% Similarity=0.093 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038490 102 ALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM 144 (344)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 144 (344)
-.++.+-....+++-+..-...++ +...||..+|+..++.-
T Consensus 178 L~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst 218 (333)
T KOG0991|consen 178 LKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQST 218 (333)
T ss_pred HHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHH
Confidence 333333333334333333333332 23455555555555443
No 472
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.22 E-value=2.3e+02 Score=25.64 Aligned_cols=86 Identities=12% Similarity=0.084 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC------------CCHHHHHHHHHHHHHc
Q 038490 204 DEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE------------MDAGIYSSLISALFKA 271 (344)
Q Consensus 204 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~ 271 (344)
++....+....+..|+..+......++.. ..|++..+...++.+...+-. +.......+++++ ..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~--s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~ 254 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARL--ADGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQ 254 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-Hc
Confidence 34444444444444555555554444432 345666666555554433211 1222334455555 45
Q ss_pred CCcCcHHHHHHHHHHcCCCCC
Q 038490 272 GRKNEFPAILKEMKERGCKPN 292 (344)
Q Consensus 272 g~~~~a~~~~~~~~~~~~~p~ 292 (344)
++.++|+.++.++...|..|.
T Consensus 255 ~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 255 GDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 788889999999888875543
No 473
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.80 E-value=2.2e+02 Score=25.39 Aligned_cols=202 Identities=14% Similarity=0.078 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCc--------hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCH
Q 038490 47 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK--------EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV 118 (344)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 118 (344)
......++-+-.-.|++.+|++-+..|.+.....|. ......+.-.+...+.++.|+.-|....+.--..+.
T Consensus 323 m~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl 402 (629)
T KOG2300|consen 323 MILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL 402 (629)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH
Q ss_pred HHHH--HHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHH-------HhhCChhHHHHHHHHHhhC-----CCC
Q 038490 119 KFFN--TLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGC-------VVSRRLEDAWKVFDEMVKR-----RLQ 184 (344)
Q Consensus 119 ~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~~-----~~~ 184 (344)
..+. .+.-.|.+.|+.+.-.++++.+......+...-......+ ...+++.+|...+.+-.+. ..+
T Consensus 403 ~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~r 482 (629)
T KOG2300|consen 403 QAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNR 482 (629)
T ss_pred HHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHH
Q ss_pred cCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHH-------HHHHHHHHHhcCChHHHHHHHHH
Q 038490 185 PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQV-------FASLIKGLCAVGELSLALGVKEE 248 (344)
Q Consensus 185 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~ 248 (344)
...-....+-..+...|+..++....+-.++-..-.||..+ |..+..++...|+-++-..+-..
T Consensus 483 L~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~~ 553 (629)
T KOG2300|consen 483 LTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRKH 553 (629)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
No 474
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=45.34 E-value=1.1e+02 Score=25.18 Aligned_cols=58 Identities=12% Similarity=0.291 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhh
Q 038490 278 PAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340 (344)
Q Consensus 278 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 340 (344)
.++++.+.+.++.|.-..|.-+.-.+.+.=.+.+.+.+|+.+.. |+.-+..|+..|+.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 57888889999999999988888788888889999999999986 34447777766653
No 475
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=45.10 E-value=1.9e+02 Score=24.39 Aligned_cols=87 Identities=11% Similarity=0.044 Sum_probs=39.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChh-HHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhc
Q 038490 123 TLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE-DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201 (344)
Q Consensus 123 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 201 (344)
.+.+.+++.++.+.+..+-+.+.. .......++..++-...-.+ -+..+++.+... ||......++++.+...
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~---lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~ 244 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPH---LPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAP 244 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhh---CChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCC
Confidence 344555666555554444444433 12223333333333222222 223333333333 56666666666665555
Q ss_pred hHHHHHHHHHHHHH
Q 038490 202 RVDEALKLKEDIMR 215 (344)
Q Consensus 202 ~~~~a~~~~~~~~~ 215 (344)
........+..++.
T Consensus 245 ~~~~~~~~i~~~L~ 258 (340)
T PF12069_consen 245 ASDLVAILIDALLQ 258 (340)
T ss_pred chhHHHHHHHHHhc
Confidence 44444444444444
No 476
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=44.98 E-value=1.1e+02 Score=25.43 Aligned_cols=79 Identities=8% Similarity=0.104 Sum_probs=59.3
Q ss_pred CCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHH
Q 038490 80 VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT-LLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL 158 (344)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 158 (344)
..|+..|...+....+.+.+.+...+|.+..... |.++..|.. --.-+...++++.+..+|....+..+.++..|...
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 4466777777777777888999999999998876 667766654 33345667899999999999888877777777544
Q ss_pred H
Q 038490 159 I 159 (344)
Q Consensus 159 ~ 159 (344)
.
T Consensus 183 f 183 (435)
T COG5191 183 F 183 (435)
T ss_pred H
Confidence 3
No 477
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=44.38 E-value=2.4e+02 Score=25.30 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=58.0
Q ss_pred CCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHH
Q 038490 42 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFF 121 (344)
Q Consensus 42 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 121 (344)
.++.|+..|...+..+.+.+.+.+...+|..|....+..|+..++.+.= -|....+++.|..+|..-++.+ +.++..|
T Consensus 100 rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w-efe~n~ni~saRalflrgLR~n-pdsp~Lw 177 (568)
T KOG2396|consen 100 RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW-EFEINLNIESARALFLRGLRFN-PDSPKLW 177 (568)
T ss_pred hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh-HHhhccchHHHHHHHHHHhhcC-CCChHHH
Confidence 3556999999999999999999999999999998764455544443322 2233334899999998888876 4445554
Q ss_pred HHHH
Q 038490 122 NTLL 125 (344)
Q Consensus 122 ~~l~ 125 (344)
....
T Consensus 178 ~eyf 181 (568)
T KOG2396|consen 178 KEYF 181 (568)
T ss_pred HHHH
Confidence 4433
No 478
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=43.93 E-value=2.5e+02 Score=25.45 Aligned_cols=130 Identities=12% Similarity=0.069 Sum_probs=0.0
Q ss_pred CchhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCc
Q 038490 3 TSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK 82 (344)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 82 (344)
+....++..|.+.+++++|+.++..| .|...... -..+.+.++..+.+..--++....++.+.... ..|.
T Consensus 409 l~~~eL~~~yl~~~qi~eAi~lL~sm------nW~~~g~~---C~~~L~~I~n~Ll~~pl~~ere~~le~algsF-~ap~ 478 (545)
T PF11768_consen 409 LGLVELISQYLRCDQIEEAINLLLSM------NWNTMGEQ---CFHCLSAIVNHLLRQPLTPEREAQLEAALGSF-YAPT 478 (545)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhC------CccccHHH---HHHHHHHHHHHHhcCCCChHHHHHHHHHHhhc-cCCC
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC
Q 038490 83 EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS 149 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 149 (344)
...-.....-|.. .=.+-|.+.|..+.+.+ .|..........|+.|.-+.+.-.....|.
T Consensus 479 rpl~~~~~~ey~d-~V~~~aRRfFhhLLR~~------rfekAFlLAvdi~~~DLFmdlh~~A~~~ge 538 (545)
T PF11768_consen 479 RPLSDATVLEYRD-PVSDLARRFFHHLLRYQ------RFEKAFLLAVDIGDRDLFMDLHYLAKDKGE 538 (545)
T ss_pred cCccHHHHHHHHH-HHHHHHHHHHHHHHHhh------HHHHHHHHHHhccchHHHHHHHHHHHhccc
No 479
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.85 E-value=2.2e+02 Score=24.83 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=27.8
Q ss_pred cHHHHHHHHHh---hCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHH
Q 038490 154 SYNILIHGCVV---SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197 (344)
Q Consensus 154 ~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 197 (344)
.+..+++++.+ .++.+.|+.++..|.+.|..|....-..+..++
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34445555554 367888888888888887776655444444443
No 480
>PHA03100 ankyrin repeat protein; Provisional
Probab=43.50 E-value=2.4e+02 Score=25.06 Aligned_cols=210 Identities=10% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHH--HHHH-----HHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHH
Q 038490 103 LQMFDEMSSFNVQMTVKFFNT--LLNP-----KLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVF 175 (344)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~--l~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 175 (344)
.++++.+.+.|..++...... .+.. ....|+.+-+..+++.-......+....+.+..+.. ....-.+++
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~---~~~~~~~iv 124 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAIS---KKSNSYSIV 124 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHh---cccChHHHH
Q ss_pred HHHhhCCCCcCHhhHH--HHHHHHHhhc--hHHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHH
Q 038490 176 DEMVKRRLQPTLVTFG--TLIYGLCLEL--RVDEALKLKEDIMRVYNVKPDGQVF--ASLIKGLCAVGELSLALGVKEEM 249 (344)
Q Consensus 176 ~~~~~~~~~~~~~~~~--~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~ 249 (344)
+.+.+.|..++..... ..+..++..| +.+-+..+++. |..++.... ...+...+..| -.++.+.+
T Consensus 125 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~-----g~din~~d~~g~tpL~~A~~~~----~~~iv~~L 195 (480)
T PHA03100 125 EYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDK-----GVDINAKNRYGYTPLHIAVEKG----NIDVIKFL 195 (480)
T ss_pred HHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHC-----CCCcccccCCCCCHHHHHHHhC----CHHHHHHH
Q ss_pred HHCCCCCCHHHH--------HHHHHHHHHcCC--cCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038490 250 VRDKIEMDAGIY--------SSLISALFKAGR--KNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319 (344)
Q Consensus 250 ~~~~~~~~~~~~--------~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 319 (344)
.+.|..++.... ...+...+..|. .+-+..+++.-..-+.+ |....+.+..+..... .++++.+
T Consensus 196 l~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~-d~~g~TpL~~A~~~~~-----~~iv~~L 269 (480)
T PHA03100 196 LDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIK-DVYGFTPLHYAVYNNN-----PEFVKYL 269 (480)
T ss_pred HHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCC-----HHHHHHH
Q ss_pred hhCCCCCChhh
Q 038490 320 GDKGCKANPIS 330 (344)
Q Consensus 320 ~~~~~~p~~~~ 330 (344)
.+.|..++...
T Consensus 270 l~~gad~n~~d 280 (480)
T PHA03100 270 LDLGANPNLVN 280 (480)
T ss_pred HHcCCCCCccC
No 481
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=43.38 E-value=3.1e+02 Score=26.41 Aligned_cols=36 Identities=22% Similarity=0.142 Sum_probs=25.8
Q ss_pred CCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcC
Q 038490 150 PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186 (344)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 186 (344)
.+......++..+. .++...++.+++++...|..+.
T Consensus 244 ~d~~~i~~ll~aL~-~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 244 LDQTYMVRLLDALA-AGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred CCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCHH
Confidence 44445555666544 4889999999999998887654
No 482
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.07 E-value=3.2e+02 Score=26.45 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=27.1
Q ss_pred HHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHH
Q 038490 157 ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212 (344)
Q Consensus 157 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 212 (344)
+....+...|+.+....+-.-|. .|..++.-+.+.+.+++|.+++..
T Consensus 509 tv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 509 TVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555555554443332 245566677777888888777654
No 483
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.00 E-value=98 Score=20.53 Aligned_cols=57 Identities=12% Similarity=0.036 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038490 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228 (344)
Q Consensus 169 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 228 (344)
...++.+++....+....+-....|--.|++.|+.+.+.+-|+. .+ ..-|...+|..
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet-EK--alFPES~~fmD 110 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET-EK--ALFPESGVFMD 110 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH-hh--hhCccchhHHH
Confidence 33445556655544332333333444456777887777777765 22 33455555433
No 484
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=42.89 E-value=3e+02 Score=26.09 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=44.3
Q ss_pred hHHHHHHHHHh-hCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCC------------CHHHHHHHHHHHHh
Q 038490 169 EDAWKVFDEMV-KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKP------------DGQVFASLIKGLCA 235 (344)
Q Consensus 169 ~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~ 235 (344)
++....+.... +.|+..+......++... .|+...++.++++++...+-.. +......++.++ .
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL-~ 257 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGI-I 257 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHH-H
Confidence 34444444433 346666666666555432 5778888887777554211111 111223333333 3
Q ss_pred cCChHHHHHHHHHHHHCCCC
Q 038490 236 VGELSLALGVKEEMVRDKIE 255 (344)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~~~ 255 (344)
.++...++.+++++...|..
T Consensus 258 ~~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 258 NQDGAALLAKAQEMAACAVG 277 (709)
T ss_pred cCCHHHHHHHHHHHHHhCCC
Confidence 36666677777777666654
No 485
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=42.23 E-value=14 Score=20.81 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=17.3
Q ss_pred cCCchHHHHHHHHhhhcCCCCCch
Q 038490 60 AKMFDEMQQILHQLKHDTRIVPKE 83 (344)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~~~~~~~ 83 (344)
.-+++.|...|..+...+.++|+.
T Consensus 26 ~Wd~~~A~~~F~~l~~~~~IP~eA 49 (51)
T PF03943_consen 26 NWDYERALQNFEELKAQGKIPPEA 49 (51)
T ss_dssp TT-CCHHHHHHHHCCCTT-S-CCC
T ss_pred CCCHHHHHHHHHHHHHcCCCChHh
Confidence 448999999999998876677765
No 486
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=42.19 E-value=74 Score=18.85 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=7.8
Q ss_pred hhCChhHHHHHHHHHhh
Q 038490 164 VSRRLEDAWKVFDEMVK 180 (344)
Q Consensus 164 ~~~~~~~a~~~~~~~~~ 180 (344)
..|++=+|-++++.+-.
T Consensus 11 n~g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWK 27 (62)
T ss_dssp HTT-HHHHHHHHHHHCC
T ss_pred cCCCHHHhHHHHHHHHH
Confidence 34455555555555443
No 487
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=41.89 E-value=22 Score=21.14 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=17.8
Q ss_pred CCchHHHHHHHHhhhcCCCCCch
Q 038490 61 KMFDEMQQILHQLKHDTRIVPKE 83 (344)
Q Consensus 61 ~~~~~a~~~~~~~~~~~~~~~~~ 83 (344)
-+++.|...|..+...+.++|+.
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhh
Confidence 47888999999988765566664
No 488
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=41.44 E-value=3.2e+02 Score=26.05 Aligned_cols=190 Identities=16% Similarity=0.108 Sum_probs=0.0
Q ss_pred cHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhh-----------chHHHHHHHHHHHHHhcCCCCC
Q 038490 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE-----------LRVDEALKLKEDIMRVYNVKPD 222 (344)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~ 222 (344)
....++.++...|+++.|.+++..-...-+. .......++.+.... |....|.+.++-+.....-.+.
T Consensus 434 ~~~~~l~~LL~~~~f~la~~~~~~~~~~~l~-~~~~~~lvl~~~~e~fd~Asn~n~~~g~lk~A~~~L~l~~~~~~~~~~ 512 (715)
T PF08314_consen 434 IEEIFLEALLSSGRFSLAKSLYEESSSSPLS-SEKVEDLVLKAAWEFFDNASNGNRTRGGLKKARECLNLFPPTFPNSPR 512 (715)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHTT---TT--HHHHHHHHHHHHHHHHH-SS--TTSHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhcCCcCCCC-HHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccCcCCccHH
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----cCcHHHHHHHHHHc---------CC
Q 038490 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR----KNEFPAILKEMKER---------GC 289 (344)
Q Consensus 223 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~a~~~~~~~~~~---------~~ 289 (344)
..-...++.+.....++.-..+-=.-+.-..+.....-...+-..+....+ +++-.++...+... ..
T Consensus 513 ~~~~~~Li~a~~~Ls~f~l~l~~g~p~~P~~ir~~~dpl~LI~~vLe~np~aY~~~~~ll~l~~~L~~~~~~~~~~~~~~ 592 (715)
T PF08314_consen 513 IQREKDLIKATHALSEFSLVLQPGVPFLPVQIRLHSDPLSLISKVLEQNPKAYKQLEKLLDLANNLVLAGSDESSESDDE 592 (715)
T ss_dssp HHHHHHHHHHHHHHTTS-----------HHHHHTTT-THHHHHHHHHHSTTGGG-HHHHHHHHHHHHHH-----TT---S
T ss_pred HHHHHHHHHHHHHHHhCCeecCCCCCCCCceeeccCChHHHHHHHHHhCchhhcCHHHHHHHHHHHHHHhcccccccchH
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChh--hHHHHHHHHhhcCCC
Q 038490 290 KPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI--SYNVILGGLCKDGKC 344 (344)
Q Consensus 290 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~g~~ 344 (344)
.-........|.+-...+|++-|.+...++.+.-...... .+...-.+|.+.|++
T Consensus 593 ~~~~ri~~~~i~~AL~~~Df~~Ay~~~~~ll~~~~~~~~~~~~~~~~W~~~~q~Gk~ 649 (715)
T PF08314_consen 593 AAERRILSMCIEAALVEDDFETAYSYCLELLDPPSDASSSSPNDDESWRTCYQVGKY 649 (715)
T ss_dssp STHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcccccccCCCChHHHHHHHHhCC
No 489
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=41.38 E-value=2.7e+02 Score=25.42 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=15.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC
Q 038490 228 SLIKGLCAVGELSLALGVKEEMVRD 252 (344)
Q Consensus 228 ~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (344)
.++.++...++.+.|.++++++.+.
T Consensus 213 ~v~k~vv~LnDa~~a~~L~~kL~~e 237 (926)
T COG5116 213 YVIKAVVYLNDAEKAKALIEKLVKE 237 (926)
T ss_pred EEeEEEEEeccHHHHHHHHHHHHhh
Confidence 4455555666677777777776654
No 490
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=41.26 E-value=1.1e+02 Score=20.52 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=9.5
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 038490 124 LLNPKLTCGKLDRMKELFQIM 144 (344)
Q Consensus 124 l~~~~~~~~~~~~a~~~~~~~ 144 (344)
++.-|...++.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 333444445555555555444
No 491
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=40.82 E-value=1.3e+02 Score=21.41 Aligned_cols=87 Identities=8% Similarity=0.020 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHhc-cCC-CCcccHHHHHHHHHhhCChhHH
Q 038490 97 RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK---LDRMKELFQIMEK-YVS-PDACSYNILIHGCVVSRRLEDA 171 (344)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a 171 (344)
+++-...+-+..-...+ .++..+--.+..++.+..+ ..+...+++.+.+ ..+ .......-|.-++.+.++++++
T Consensus 12 ~d~~~~~e~~~rq~a~~-~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s 90 (149)
T KOG3364|consen 12 EDLIAGQEEILRQAARS-DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKS 90 (149)
T ss_pred hhhhHHHHHHHHHHHhc-cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHH
Q ss_pred HHHHHHHhhCCCCcC
Q 038490 172 WKVFDEMVKRRLQPT 186 (344)
Q Consensus 172 ~~~~~~~~~~~~~~~ 186 (344)
.++++.+.+. .||
T Consensus 91 ~~yvd~ll~~--e~~ 103 (149)
T KOG3364|consen 91 LRYVDALLET--EPN 103 (149)
T ss_pred HHHHHHHHhh--CCC
No 492
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=40.07 E-value=3.3e+02 Score=27.67 Aligned_cols=158 Identities=18% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHhcCChHHHHH------HHH-HHhccCCCCcccHHHHHHHHHhhCChhHHHH-------HHHHHhhCCCCcCHhhHH
Q 038490 126 NPKLTCGKLDRMKE------LFQ-IMEKYVSPDACSYNILIHGCVVSRRLEDAWK-------VFDEMVKRRLQPTLVTFG 191 (344)
Q Consensus 126 ~~~~~~~~~~~a~~------~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-------~~~~~~~~~~~~~~~~~~ 191 (344)
+.....|.+.++.+ ++. .|....+.....|..+...+-+.|+.++|+. +-+++......-+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCCH
Q 038490 192 TLIYGLCLELRVDEALKLKEDIMRVYNV------KPDGQVFASLIKGLCAVGELSLALGVKEEMVRD-------KIEMDA 258 (344)
Q Consensus 192 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~ 258 (344)
.+...+...+....|...+.+.....++ +|...+++.+-..+...++++.|.++++.+... ..-.+.
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Q ss_pred HHHHHHHHHHHHcCCcCcHHHHHHH
Q 038490 259 GIYSSLISALFKAGRKNEFPAILKE 283 (344)
Q Consensus 259 ~~~~~l~~~~~~~g~~~~a~~~~~~ 283 (344)
.++..+.+.+...+++..|....+.
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHhh
No 493
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.28 E-value=3.3e+02 Score=25.47 Aligned_cols=83 Identities=12% Similarity=0.139 Sum_probs=41.4
Q ss_pred HHHHHHHHH-hhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC------------HHHHHHHHHHHHhc
Q 038490 170 DAWKVFDEM-VKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD------------GQVFASLIKGLCAV 236 (344)
Q Consensus 170 ~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~ 236 (344)
+..+.+.+. .+.|+..+......++. ...|+...+..+++++....+-..+ ......++.++ ..
T Consensus 187 ei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL-~~ 263 (618)
T PRK14951 187 TVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDAL-AQ 263 (618)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHH-Hc
Confidence 334444333 34566666665555554 3357777777777654433211111 12222333333 33
Q ss_pred CChHHHHHHHHHHHHCCCC
Q 038490 237 GELSLALGVKEEMVRDKIE 255 (344)
Q Consensus 237 ~~~~~a~~~~~~~~~~~~~ 255 (344)
|+...++.+++++...|..
T Consensus 264 ~d~~~al~~l~~l~~~G~~ 282 (618)
T PRK14951 264 GDGRTVVETADELRLNGLS 282 (618)
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 5666666666666666544
No 494
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=39.22 E-value=1.7e+02 Score=22.29 Aligned_cols=107 Identities=16% Similarity=0.103 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHh--cCCCCCHHHHHHHHH-HHHhcCC--hHHHH
Q 038490 64 DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS--FNVQMTVKFFNTLLN-PKLTCGK--LDRMK 138 (344)
Q Consensus 64 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~-~~~~~~~--~~~a~ 138 (344)
++++++.+++.. ++..+-...+.|++++|..-++++.+ ..++.-...|..+.. +++..+. +-+|.
T Consensus 20 EE~l~lsRei~r----------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~ 89 (204)
T COG2178 20 EEALKLSREIVR----------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEAT 89 (204)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHH
Q ss_pred HHHHHHhccCCCCcc----cHHHHHHHHH--------------hhCChhHHHHHHHHHhh
Q 038490 139 ELFQIMEKYVSPDAC----SYNILIHGCV--------------VSRRLEDAWKVFDEMVK 180 (344)
Q Consensus 139 ~~~~~~~~~~~~~~~----~~~~l~~~~~--------------~~~~~~~a~~~~~~~~~ 180 (344)
.++.-+.....|+.. .+...+.+.+ +.|+++.|.+.++-|.+
T Consensus 90 ~l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 90 LLYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 495
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=38.58 E-value=92 Score=24.52 Aligned_cols=55 Identities=9% Similarity=0.087 Sum_probs=34.6
Q ss_pred HHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Q 038490 57 LGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFN 113 (344)
Q Consensus 57 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 113 (344)
..+.++.+.+.+++++...- .+.....|-.+...-.+.|+++.|.+.|++..+.+
T Consensus 5 ~~~~~D~~aaaely~qal~l--ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALEL--APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhc--CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 44556666677777666652 23445566666666666777777777777766654
No 496
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=37.93 E-value=1.3e+02 Score=20.49 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=9.7
Q ss_pred HhccCCHHHHHHHHHHHhhCC
Q 038490 303 FCKEEDFEAAFTILDEMGDKG 323 (344)
Q Consensus 303 ~~~~~~~~~a~~~~~~~~~~~ 323 (344)
+.++...++|+++++-|.++|
T Consensus 71 lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 71 LRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHhCcHHHHHHHHHHHHHhC
Confidence 334444444444444444443
No 497
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=37.93 E-value=2.7e+02 Score=24.22 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccC-------C-CCcccHHHHHHHHHhhCChhHHHHHHHHHh
Q 038490 120 FFNTLLNPKLTCGKLDRMKELFQIMEKYV-------S-PDACSYNILIHGCVVSRRLEDAWKVFDEMV 179 (344)
Q Consensus 120 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (344)
....|++.++-.||+..|+++++.+.-.. + -...++.-+.-+|...+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888999999999988764321 1 345667778888999999999999998864
No 498
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.90 E-value=3e+02 Score=24.65 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=14.9
Q ss_pred CCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHH
Q 038490 181 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDI 213 (344)
Q Consensus 181 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 213 (344)
.|+..+......++.. ..|+...+...++.+
T Consensus 192 egi~i~~eal~~Ia~~--s~GdlR~aln~Le~l 222 (472)
T PRK14962 192 EGIEIDREALSFIAKR--ASGGLRDALTMLEQV 222 (472)
T ss_pred cCCCCCHHHHHHHHHH--hCCCHHHHHHHHHHH
Confidence 3444444444444432 245555565555554
No 499
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=37.42 E-value=1.1e+02 Score=19.62 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 038490 104 QMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEK 146 (344)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 146 (344)
++|+.....|+..|..+|..++....-.=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6666666667677777777776666555555556666666543
No 500
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=36.92 E-value=2.3e+02 Score=23.03 Aligned_cols=151 Identities=11% Similarity=-0.027 Sum_probs=76.7
Q ss_pred hcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhccCCCCcccHHHHHHHHHh----hC
Q 038490 95 RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT----CGKLDRMKELFQIMEKYVSPDACSYNILIHGCVV----SR 166 (344)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 166 (344)
..+++..+...+......+ .+ .....+...|.. ..+...|..++...-+.+. ......|...|.. ..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~-~~--~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~--~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG-DA--AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL--AEALFNLGLMYANGRGVPL 127 (292)
T ss_pred ccccHHHHHHHHHHhhhcC-Ch--HHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc--HHHHHhHHHHHhcCCCccc
Confidence 4455666666666665533 12 233333333332 3456777777775554332 2233334444444 33
Q ss_pred ChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhc-------hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----
Q 038490 167 RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL-------RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA---- 235 (344)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 235 (344)
+..+|..+|++..+.|..+...+...+...+.... +...|...+.++.... +......+...|..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----CHHHHHHHHHHHHcCCCC
Confidence 77888888888888775543222222332322221 2235666666654431 33333334333322
Q ss_pred cCChHHHHHHHHHHHHCCC
Q 038490 236 VGELSLALGVKEEMVRDKI 254 (344)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~~ 254 (344)
..+.++|...|....+.|.
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC
Confidence 2356677777777776653
Done!