Query 038490
Match_columns 344
No_of_seqs 559 out of 1835
Neff 11.9
Searched_HMMs 29240
Date Mon Mar 25 20:07:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 4.6E-35 1.6E-39 251.8 21.0 186 154-340 28-222 (501)
2 4g26_A Pentatricopeptide repea 100.0 4.3E-34 1.5E-38 245.9 21.5 213 66-305 9-222 (501)
3 2xpi_A Anaphase-promoting comp 100.0 3.4E-32 1.1E-36 242.6 31.4 333 3-344 151-532 (597)
4 2xpi_A Anaphase-promoting comp 100.0 4.9E-31 1.7E-35 235.1 33.6 313 6-339 276-595 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 9.1E-28 3.1E-32 202.7 32.7 290 46-344 66-355 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.9E-27 6.4E-32 200.8 32.3 319 4-343 69-388 (388)
7 2y4t_A DNAJ homolog subfamily 100.0 3.7E-25 1.3E-29 190.4 31.3 311 4-335 28-370 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 3.4E-24 1.2E-28 184.4 33.0 294 41-344 20-345 (450)
9 3ieg_A DNAJ homolog subfamily 99.9 3.9E-23 1.3E-27 172.1 32.0 315 4-339 5-351 (359)
10 3hym_B Cell division cycle pro 99.9 3.5E-22 1.2E-26 164.5 31.9 295 41-343 16-320 (330)
11 3hym_B Cell division cycle pro 99.9 2.8E-22 9.7E-27 165.0 27.5 291 3-310 23-322 (330)
12 2gw1_A Mitochondrial precursor 99.9 1.2E-22 4.2E-27 177.5 25.6 319 5-343 9-464 (514)
13 1fch_A Peroxisomal targeting s 99.9 5.5E-22 1.9E-26 166.0 28.3 295 12-319 35-356 (368)
14 3ieg_A DNAJ homolog subfamily 99.9 7.8E-21 2.7E-25 158.2 33.5 290 46-344 2-322 (359)
15 4eqf_A PEX5-related protein; a 99.9 1.4E-21 4.6E-26 163.5 26.4 267 46-318 64-352 (365)
16 1fch_A Peroxisomal targeting s 99.9 3.2E-21 1.1E-25 161.3 27.3 284 57-344 35-346 (368)
17 3fp2_A TPR repeat-containing p 99.9 8E-21 2.7E-25 167.0 28.6 319 5-343 28-477 (537)
18 2gw1_A Mitochondrial precursor 99.9 2.3E-20 7.8E-25 163.1 30.8 289 46-344 5-388 (514)
19 3cv0_A Peroxisome targeting si 99.9 8.6E-21 2.9E-25 156.0 25.8 268 46-320 20-313 (327)
20 4eqf_A PEX5-related protein; a 99.9 1.7E-20 5.7E-25 156.9 25.0 259 82-343 64-342 (365)
21 3cv0_A Peroxisome targeting si 99.9 1.5E-20 5E-25 154.6 20.6 264 4-284 23-312 (327)
22 3fp2_A TPR repeat-containing p 99.9 1E-19 3.5E-24 159.9 26.6 302 4-322 61-491 (537)
23 3mkr_A Coatomer subunit epsilo 99.8 2.6E-18 9E-23 138.4 27.0 253 11-288 8-265 (291)
24 3mkr_A Coatomer subunit epsilo 99.8 2.2E-18 7.5E-23 138.9 24.2 251 54-322 6-264 (291)
25 3spa_A Mtrpol, DNA-directed RN 99.8 1.1E-20 3.7E-25 168.3 10.0 154 184-342 124-286 (1134)
26 3spa_A Mtrpol, DNA-directed RN 99.8 1.9E-20 6.6E-25 166.8 11.1 149 152-306 127-285 (1134)
27 1b89_A Protein (clathrin heavy 99.8 6.1E-19 2.1E-23 145.7 14.3 282 8-343 9-297 (449)
28 3uq3_A Heat shock protein STI1 99.8 3.9E-17 1.3E-21 129.4 24.2 229 47-321 5-235 (258)
29 2pl2_A Hypothetical conserved 99.8 1.5E-17 5E-22 128.3 20.9 196 46-248 4-210 (217)
30 3uq3_A Heat shock protein STI1 99.8 5.3E-17 1.8E-21 128.6 24.7 196 45-252 36-236 (258)
31 2pl2_A Hypothetical conserved 99.8 2E-17 7E-22 127.5 21.6 210 81-320 3-212 (217)
32 1b89_A Protein (clathrin heavy 99.8 1.6E-18 5.6E-23 143.2 15.9 266 1-315 31-304 (449)
33 2xm6_A Protein corresponding t 99.8 1.8E-15 6.1E-20 131.4 33.9 269 47-340 111-411 (490)
34 3u4t_A TPR repeat-containing p 99.8 4E-17 1.4E-21 130.5 21.2 247 47-299 3-261 (272)
35 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.8E-17 6.1E-22 132.7 18.4 249 58-316 16-269 (275)
36 2xm6_A Protein corresponding t 99.8 3.1E-15 1.1E-19 129.9 33.6 298 5-340 42-375 (490)
37 2q7f_A YRRB protein; TPR, prot 99.8 7.9E-17 2.7E-21 126.4 20.3 202 45-252 21-222 (243)
38 3u4t_A TPR repeat-containing p 99.8 5.2E-16 1.8E-20 124.0 25.3 247 83-337 3-264 (272)
39 2h6f_A Protein farnesyltransfe 99.8 2.6E-16 8.8E-21 131.1 23.9 250 44-303 94-363 (382)
40 2ho1_A Type 4 fimbrial biogene 99.8 7.1E-16 2.4E-20 121.8 25.3 198 86-287 40-238 (252)
41 2ho1_A Type 4 fimbrial biogene 99.8 8.9E-16 3E-20 121.2 25.6 202 47-254 37-240 (252)
42 2vq2_A PILW, putative fimbrial 99.8 1.5E-15 5.1E-20 117.6 25.9 98 46-146 7-105 (225)
43 2vq2_A PILW, putative fimbrial 99.8 1.9E-15 6.7E-20 116.9 26.5 214 81-299 6-221 (225)
44 2q7f_A YRRB protein; TPR, prot 99.8 2E-16 6.9E-21 124.1 21.0 202 82-288 22-223 (243)
45 4g1t_A Interferon-induced prot 99.8 1.1E-15 3.8E-20 132.1 27.5 312 4-322 53-401 (472)
46 2h6f_A Protein farnesyltransfe 99.7 1.4E-15 4.8E-20 126.6 25.4 248 83-339 97-364 (382)
47 1xnf_A Lipoprotein NLPI; TPR, 99.7 4.7E-17 1.6E-21 130.2 15.5 259 6-281 9-269 (275)
48 3sf4_A G-protein-signaling mod 99.7 3.6E-16 1.2E-20 132.3 21.5 297 45-343 7-362 (406)
49 1ouv_A Conserved hypothetical 99.7 2.5E-14 8.6E-19 114.3 31.1 224 46-288 5-252 (273)
50 4a1s_A PINS, partner of inscut 99.7 3.1E-16 1.1E-20 133.1 20.1 276 45-322 46-372 (411)
51 3ro2_A PINS homolog, G-protein 99.7 6.9E-16 2.4E-20 126.9 19.8 275 46-322 4-332 (338)
52 2ooe_A Cleavage stimulation fa 99.7 1.1E-13 3.6E-18 121.5 34.5 203 136-343 256-478 (530)
53 1ouv_A Conserved hypothetical 99.7 3.7E-14 1.3E-18 113.3 28.9 224 82-323 5-252 (273)
54 2ond_A Cleavage stimulation fa 99.7 1.6E-13 5.3E-18 111.7 29.5 237 46-288 7-271 (308)
55 2ond_A Cleavage stimulation fa 99.7 1E-13 3.6E-18 112.7 27.1 217 100-322 33-270 (308)
56 1xi4_A Clathrin heavy chain; a 99.7 1E-13 3.6E-18 128.0 29.7 274 6-340 1053-1326(1630)
57 4abn_A Tetratricopeptide repea 99.7 6.1E-15 2.1E-19 127.1 20.5 217 97-319 82-318 (474)
58 3sf4_A G-protein-signaling mod 99.7 5.6E-16 1.9E-20 131.1 13.7 295 6-309 13-363 (406)
59 4a1s_A PINS, partner of inscut 99.7 6.2E-16 2.1E-20 131.2 13.7 273 6-287 52-372 (411)
60 4g1t_A Interferon-induced prot 99.7 3.6E-13 1.2E-17 116.3 31.0 276 45-325 49-366 (472)
61 2ooe_A Cleavage stimulation fa 99.7 1.5E-13 5.2E-18 120.5 28.8 317 7-343 18-440 (530)
62 3ro2_A PINS homolog, G-protein 99.7 1.4E-15 4.6E-20 125.1 13.5 276 5-287 8-332 (338)
63 3nf1_A KLC 1, kinesin light ch 99.6 3.7E-15 1.3E-19 121.3 14.9 245 41-321 21-306 (311)
64 3vtx_A MAMA; tetratricopeptide 99.6 1.1E-13 3.8E-18 103.6 21.8 164 84-251 6-169 (184)
65 3vtx_A MAMA; tetratricopeptide 99.6 9.3E-14 3.2E-18 104.0 20.5 167 117-287 4-170 (184)
66 3nf1_A KLC 1, kinesin light ch 99.6 6.7E-15 2.3E-19 119.8 14.0 163 16-181 41-224 (311)
67 4abn_A Tetratricopeptide repea 99.6 4.6E-14 1.6E-18 121.7 19.6 214 63-284 84-318 (474)
68 3ulq_A Response regulator aspa 99.6 2.3E-14 7.9E-19 120.4 16.9 298 12-321 22-367 (383)
69 1xi4_A Clathrin heavy chain; a 99.6 4.1E-12 1.4E-16 117.7 31.4 236 46-314 1133-1376(1630)
70 3as5_A MAMA; tetratricopeptide 99.6 4.7E-13 1.6E-17 100.0 18.3 166 47-216 8-173 (186)
71 1hz4_A MALT regulatory protein 99.6 5E-12 1.7E-16 105.7 25.6 271 49-321 16-321 (373)
72 3e4b_A ALGK; tetratricopeptide 99.5 1.5E-13 5E-18 117.8 16.0 293 6-339 7-365 (452)
73 3ulq_A Response regulator aspa 99.5 6.5E-13 2.2E-17 111.6 19.2 283 57-344 22-355 (383)
74 3as5_A MAMA; tetratricopeptide 99.5 2.2E-12 7.6E-17 96.3 20.1 164 84-251 9-172 (186)
75 3e4b_A ALGK; tetratricopeptide 99.5 2.7E-12 9.3E-17 109.9 21.3 285 2-324 35-389 (452)
76 4gyw_A UDP-N-acetylglucosamine 99.5 2E-12 6.7E-17 116.1 21.1 164 83-250 9-172 (723)
77 4gyw_A UDP-N-acetylglucosamine 99.5 1.9E-12 6.5E-17 116.2 20.6 169 43-215 5-173 (723)
78 4i17_A Hypothetical protein; T 99.5 1.4E-11 4.8E-16 95.5 22.3 205 46-265 6-221 (228)
79 1hz4_A MALT regulatory protein 99.5 4.4E-12 1.5E-16 106.0 18.5 275 7-287 19-322 (373)
80 4i17_A Hypothetical protein; T 99.5 1.1E-11 3.7E-16 96.1 19.3 206 81-299 5-220 (228)
81 3edt_B KLC 2, kinesin light ch 99.5 4.8E-13 1.6E-17 107.1 12.0 235 13-252 12-281 (283)
82 3edt_B KLC 2, kinesin light ch 99.5 2.5E-12 8.7E-17 102.8 15.4 237 58-321 12-280 (283)
83 3q15_A PSP28, response regulat 99.4 4.6E-11 1.6E-15 100.1 22.4 198 120-320 143-363 (378)
84 3q15_A PSP28, response regulat 99.4 5.4E-12 1.9E-16 105.7 16.4 238 46-287 100-365 (378)
85 3mv2_B Coatomer subunit epsilo 99.4 1.5E-10 5.1E-15 91.9 22.7 239 14-288 25-283 (310)
86 1qqe_A Vesicular transport pro 99.4 2.5E-11 8.7E-16 97.8 18.6 235 64-321 2-268 (292)
87 3qky_A Outer membrane assembly 99.4 1E-10 3.5E-15 92.6 19.7 171 44-216 12-224 (261)
88 4ga2_A E3 SUMO-protein ligase 99.4 4.1E-12 1.4E-16 91.5 10.3 147 7-167 2-149 (150)
89 2fo7_A Synthetic consensus TPR 99.4 7E-11 2.4E-15 83.0 16.0 130 49-181 3-132 (136)
90 3qky_A Outer membrane assembly 99.3 2E-10 7E-15 90.9 19.2 184 82-287 14-224 (261)
91 3urz_A Uncharacterized protein 99.3 1.6E-10 5.5E-15 88.1 17.6 162 47-214 4-184 (208)
92 2fo7_A Synthetic consensus TPR 99.3 3E-10 1E-14 79.7 16.4 127 86-214 4-130 (136)
93 2r5s_A Uncharacterized protein 99.3 7.8E-11 2.7E-15 87.3 13.4 156 7-177 11-169 (176)
94 4e6h_A MRNA 3'-END-processing 99.3 2.4E-08 8.3E-13 88.9 31.3 324 9-343 107-556 (679)
95 1qqe_A Vesicular transport pro 99.3 2.3E-10 8E-15 92.1 16.9 62 50-111 40-105 (292)
96 2pzi_A Probable serine/threoni 99.3 7.9E-11 2.7E-15 106.1 15.5 180 13-201 402-582 (681)
97 3mv2_B Coatomer subunit epsilo 99.3 1.8E-09 6.2E-14 85.7 21.3 244 54-322 20-282 (310)
98 2pzi_A Probable serine/threoni 99.3 1E-10 3.5E-15 105.3 16.1 172 58-237 402-582 (681)
99 3dra_A Protein farnesyltransfe 99.3 2.9E-08 1E-12 79.5 28.5 224 57-286 42-286 (306)
100 2r5s_A Uncharacterized protein 99.3 1E-10 3.5E-15 86.7 13.4 164 48-215 7-172 (176)
101 3urz_A Uncharacterized protein 99.3 7.1E-10 2.4E-14 84.5 18.2 163 85-252 6-186 (208)
102 3dra_A Protein farnesyltransfe 99.3 1.5E-08 5.3E-13 81.1 26.1 233 97-335 47-300 (306)
103 4ga2_A E3 SUMO-protein ligase 99.3 1.9E-10 6.4E-15 82.7 13.6 143 160-307 5-148 (150)
104 3qou_A Protein YBBN; thioredox 99.3 4.7E-10 1.6E-14 90.0 17.2 168 115-286 114-283 (287)
105 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.5E-09 8.5E-14 82.5 20.7 205 46-288 3-214 (225)
106 3qou_A Protein YBBN; thioredox 99.3 8.1E-10 2.8E-14 88.7 18.6 170 80-251 114-283 (287)
107 2vsy_A XCC0866; transferase, g 99.2 3.9E-10 1.3E-14 99.7 16.8 154 15-182 2-158 (568)
108 2vsy_A XCC0866; transferase, g 99.2 7.2E-10 2.5E-14 98.0 17.2 154 60-217 2-158 (568)
109 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.3E-08 4.4E-13 78.5 22.1 204 83-323 4-214 (225)
110 4e6h_A MRNA 3'-END-processing 99.1 2E-08 6.9E-13 89.4 23.3 250 47-303 302-584 (679)
111 1hh8_A P67PHOX, NCF-2, neutrop 99.1 1.2E-08 4.2E-13 77.8 18.7 130 47-182 6-151 (213)
112 3rjv_A Putative SEL1 repeat pr 99.1 6.2E-09 2.1E-13 79.5 16.7 128 46-181 17-158 (212)
113 2lni_A Stress-induced-phosphop 99.1 7.4E-09 2.5E-13 72.4 15.5 124 40-166 9-132 (133)
114 3rjv_A Putative SEL1 repeat pr 99.1 1.1E-08 3.8E-13 78.0 17.6 163 151-323 17-198 (212)
115 2ifu_A Gamma-SNAP; membrane fu 99.1 9.4E-09 3.2E-13 83.3 17.9 227 59-314 3-253 (307)
116 1p5q_A FKBP52, FK506-binding p 99.1 8.6E-10 3E-14 90.6 11.4 122 46-171 146-283 (336)
117 3q7a_A Farnesyltransferase alp 99.1 3.9E-07 1.3E-11 73.9 26.1 157 55-215 62-236 (349)
118 2c2l_A CHIP, carboxy terminus 99.1 2.2E-09 7.7E-14 85.8 12.6 195 46-252 3-199 (281)
119 2fbn_A 70 kDa peptidylprolyl i 99.0 1.2E-09 4.3E-14 82.4 10.2 159 2-172 4-176 (198)
120 2ifu_A Gamma-SNAP; membrane fu 99.0 6E-09 2.1E-13 84.5 14.9 191 86-279 39-253 (307)
121 1a17_A Serine/threonine protei 99.0 1.4E-08 4.8E-13 74.0 15.4 128 47-177 13-142 (166)
122 3q7a_A Farnesyltransferase alp 99.0 4.2E-07 1.4E-11 73.7 24.9 221 97-322 68-331 (349)
123 4gco_A Protein STI-1; structur 99.0 7E-09 2.4E-13 71.9 12.8 110 46-158 12-121 (126)
124 2vyi_A SGTA protein; chaperone 99.0 9.9E-09 3.4E-13 71.4 13.7 123 43-168 8-130 (131)
125 1hh8_A P67PHOX, NCF-2, neutrop 99.0 6.4E-08 2.2E-12 73.7 18.7 128 154-288 8-151 (213)
126 1na0_A Designed protein CTPR3; 99.0 2E-08 6.9E-13 69.1 14.4 114 47-163 9-122 (125)
127 2e2e_A Formate-dependent nitri 99.0 7.3E-09 2.5E-13 76.6 12.6 122 58-182 21-145 (177)
128 1a17_A Serine/threonine protei 99.0 4.2E-08 1.4E-12 71.4 16.5 128 84-213 14-143 (166)
129 2c2l_A CHIP, carboxy terminus 99.0 2.2E-09 7.5E-14 85.8 10.0 195 82-287 3-199 (281)
130 3u3w_A Transcriptional activat 99.0 8.9E-08 3E-12 77.0 19.3 162 159-320 82-264 (293)
131 2qfc_A PLCR protein; TPR, HTH, 99.0 1.4E-07 4.8E-12 75.9 20.5 166 120-285 77-264 (293)
132 2uy1_A Cleavage stimulation fa 99.0 8.3E-07 2.8E-11 76.6 26.0 154 16-181 28-242 (493)
133 3gyz_A Chaperone protein IPGC; 99.0 5.7E-09 1.9E-13 74.7 10.5 123 48-181 10-133 (151)
134 3gyz_A Chaperone protein IPGC; 99.0 1.1E-08 3.9E-13 73.1 11.9 101 44-147 33-133 (151)
135 2vgx_A Chaperone SYCD; alterna 99.0 8.1E-09 2.8E-13 73.9 11.1 101 46-149 20-120 (148)
136 3gw4_A Uncharacterized protein 99.0 2.1E-08 7.3E-13 75.7 13.9 50 59-110 4-53 (203)
137 3u3w_A Transcriptional activat 98.9 3E-08 1E-12 79.8 15.1 201 44-251 43-265 (293)
138 4gco_A Protein STI-1; structur 98.9 3.7E-08 1.3E-12 68.2 13.5 97 84-181 14-110 (126)
139 1na0_A Designed protein CTPR3; 98.9 5.4E-08 1.8E-12 66.9 14.4 98 83-181 9-106 (125)
140 2qfc_A PLCR protein; TPR, HTH, 98.9 5.2E-07 1.8E-11 72.5 22.0 166 85-251 77-265 (293)
141 2e2e_A Formate-dependent nitri 98.9 3.7E-08 1.3E-12 72.7 13.4 121 163-287 21-144 (177)
142 4f3v_A ESX-1 secretion system 98.9 1.9E-08 6.6E-13 78.8 12.2 186 95-287 18-237 (282)
143 2xcb_A PCRH, regulatory protei 98.9 3.5E-08 1.2E-12 70.0 12.6 101 46-149 17-117 (142)
144 2lni_A Stress-induced-phosphop 98.9 5.8E-08 2E-12 67.7 13.4 100 81-181 14-113 (133)
145 2vgx_A Chaperone SYCD; alterna 98.9 1.9E-08 6.6E-13 71.9 10.9 98 83-181 21-118 (148)
146 3gw4_A Uncharacterized protein 98.9 4.5E-08 1.5E-12 73.9 13.6 158 94-252 3-176 (203)
147 2vyi_A SGTA protein; chaperone 98.9 6.9E-08 2.4E-12 67.0 13.2 98 83-181 12-109 (131)
148 4f3v_A ESX-1 secretion system 98.9 1.8E-07 6.2E-12 73.4 16.1 199 59-264 18-247 (282)
149 1p5q_A FKBP52, FK506-binding p 98.9 1.5E-07 5.2E-12 77.2 16.4 151 60-214 126-292 (336)
150 3upv_A Heat shock protein STI1 98.9 8.9E-08 3E-12 66.3 12.9 99 47-148 4-102 (126)
151 1elw_A TPR1-domain of HOP; HOP 98.8 2.1E-07 7.2E-12 63.1 14.5 109 46-157 3-111 (118)
152 2dba_A Smooth muscle cell asso 98.8 2.6E-07 8.9E-12 65.7 14.9 115 43-161 24-142 (148)
153 3sz7_A HSC70 cochaperone (SGT) 98.8 2.4E-07 8.2E-12 67.4 14.8 109 43-154 7-115 (164)
154 3upv_A Heat shock protein STI1 98.8 1.9E-07 6.5E-12 64.6 13.2 98 83-181 4-101 (126)
155 2fbn_A 70 kDa peptidylprolyl i 98.8 1.9E-08 6.5E-13 75.8 8.5 150 54-207 11-176 (198)
156 2kck_A TPR repeat; tetratricop 98.8 1.7E-07 5.6E-12 63.0 12.3 101 46-149 5-108 (112)
157 3dss_A Geranylgeranyl transfer 98.8 3.5E-05 1.2E-09 62.2 28.5 200 47-253 26-268 (331)
158 1elw_A TPR1-domain of HOP; HOP 98.8 4.8E-07 1.7E-11 61.3 14.5 98 83-181 4-101 (118)
159 4b4t_Q 26S proteasome regulato 98.8 2.6E-07 8.7E-12 78.7 15.9 215 2-216 4-245 (434)
160 2xcb_A PCRH, regulatory protei 98.8 2.8E-07 9.6E-12 65.2 13.5 99 82-181 17-115 (142)
161 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 4.9E-08 1.7E-12 83.6 11.1 126 46-172 267-405 (457)
162 2kck_A TPR repeat; tetratricop 98.8 1.3E-07 4.6E-12 63.5 11.2 100 82-182 5-107 (112)
163 3q49_B STIP1 homology and U bo 98.8 1.8E-07 6.3E-12 65.6 12.1 99 46-147 8-106 (137)
164 3sz7_A HSC70 cochaperone (SGT) 98.7 3.4E-07 1.2E-11 66.6 13.3 99 82-181 10-108 (164)
165 3dss_A Geranylgeranyl transfer 98.7 1.9E-05 6.4E-10 63.8 24.2 233 14-265 41-316 (331)
166 3q49_B STIP1 homology and U bo 98.7 4.5E-07 1.5E-11 63.6 13.0 100 81-181 7-106 (137)
167 4gcn_A Protein STI-1; structur 98.7 4.4E-07 1.5E-11 62.9 12.3 94 86-180 11-111 (127)
168 1elr_A TPR2A-domain of HOP; HO 98.7 2.3E-07 7.8E-12 64.3 10.7 27 154-180 81-107 (131)
169 2uy1_A Cleavage stimulation fa 98.7 8.5E-05 2.9E-09 64.1 28.7 261 48-319 16-380 (493)
170 1elr_A TPR2A-domain of HOP; HO 98.7 3.4E-07 1.2E-11 63.4 11.1 113 46-162 3-122 (131)
171 4gcn_A Protein STI-1; structur 98.7 8.1E-07 2.8E-11 61.5 12.7 96 120-215 10-111 (127)
172 4b4t_Q 26S proteasome regulato 98.6 9.4E-07 3.2E-11 75.2 15.4 199 53-251 10-244 (434)
173 1hxi_A PEX5, peroxisome target 98.6 4.7E-07 1.6E-11 62.1 10.5 97 49-148 19-115 (121)
174 1hxi_A PEX5, peroxisome target 98.6 6.9E-07 2.4E-11 61.2 10.9 96 85-181 19-114 (121)
175 2dba_A Smooth muscle cell asso 98.6 1.9E-06 6.4E-11 61.1 13.7 99 81-181 26-128 (148)
176 2xev_A YBGF; tetratricopeptide 98.6 2.1E-06 7.3E-11 59.3 13.5 97 50-149 5-107 (129)
177 1wao_1 Serine/threonine protei 98.6 6.2E-08 2.1E-12 83.4 6.5 124 50-176 9-134 (477)
178 2if4_A ATFKBP42; FKBP-like, al 98.6 9.2E-08 3.1E-12 78.5 6.4 149 46-215 178-327 (338)
179 2xev_A YBGF; tetratricopeptide 98.5 3.6E-06 1.2E-10 58.1 12.6 93 88-181 7-105 (129)
180 1ihg_A Cyclophilin 40; ppiase 98.5 1.7E-06 5.7E-11 71.9 12.5 138 48-207 224-361 (370)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 4.1E-06 1.4E-10 71.8 14.9 144 61-208 248-406 (457)
182 3ro3_A PINS homolog, G-protein 98.5 2E-06 6.8E-11 61.9 11.2 25 296-320 132-156 (164)
183 3ro3_A PINS homolog, G-protein 98.5 2.7E-06 9.2E-11 61.2 11.9 25 226-250 132-156 (164)
184 1wao_1 Serine/threonine protei 98.5 7.8E-07 2.7E-11 76.6 10.2 122 88-211 11-134 (477)
185 3rkv_A Putative peptidylprolyl 98.5 2E-06 6.7E-11 62.3 10.6 103 46-149 10-128 (162)
186 1ihg_A Cyclophilin 40; ppiase 98.4 4.4E-06 1.5E-10 69.4 13.6 137 86-244 226-362 (370)
187 3k9i_A BH0479 protein; putativ 98.4 2E-06 6.8E-11 58.5 9.6 86 165-252 3-90 (117)
188 3rkv_A Putative peptidylprolyl 98.4 3.9E-06 1.3E-10 60.7 11.8 99 83-181 11-126 (162)
189 3k9i_A BH0479 protein; putativ 98.4 8.3E-07 2.8E-11 60.4 7.5 89 60-149 3-92 (117)
190 1dce_A Protein (RAB geranylger 98.4 8.4E-05 2.9E-09 65.3 20.5 175 61-241 43-244 (567)
191 1dce_A Protein (RAB geranylger 98.3 5.4E-05 1.8E-09 66.5 17.7 175 97-276 43-244 (567)
192 2hr2_A Hypothetical protein; a 98.2 1.9E-05 6.4E-10 56.1 11.0 60 120-179 59-129 (159)
193 2hr2_A Hypothetical protein; a 98.2 7.5E-06 2.6E-10 58.1 8.9 104 46-153 10-137 (159)
194 2l6j_A TPR repeat-containing p 98.2 2.2E-06 7.4E-11 57.5 5.9 63 48-112 5-67 (111)
195 2if4_A ATFKBP42; FKBP-like, al 98.2 5.8E-06 2E-10 67.8 8.9 147 154-322 181-328 (338)
196 2kat_A Uncharacterized protein 98.2 2E-05 7E-10 53.1 9.6 79 65-146 3-81 (115)
197 2kat_A Uncharacterized protein 98.1 3.6E-05 1.2E-09 51.9 10.6 80 101-181 3-82 (115)
198 1na3_A Designed protein CTPR2; 98.1 4.3E-05 1.5E-09 48.8 10.2 81 46-129 8-88 (91)
199 1na3_A Designed protein CTPR2; 98.1 6.1E-05 2.1E-09 48.0 10.4 84 82-166 8-91 (91)
200 1zu2_A Mitochondrial import re 98.1 1.4E-05 4.7E-10 56.6 7.5 99 197-300 12-131 (158)
201 2l6j_A TPR repeat-containing p 98.1 6.6E-05 2.3E-09 50.0 10.8 94 186-282 3-102 (111)
202 3n71_A Histone lysine methyltr 98.1 2.4E-05 8.2E-10 67.1 10.3 124 163-286 320-463 (490)
203 1zu2_A Mitochondrial import re 98.1 2.2E-05 7.6E-10 55.5 8.2 94 95-191 14-128 (158)
204 1klx_A Cysteine rich protein B 98.0 0.00023 7.9E-09 49.7 13.6 110 202-323 10-127 (138)
205 3n71_A Histone lysine methyltr 98.0 6.2E-05 2.1E-09 64.6 12.5 87 93-179 319-420 (490)
206 1klx_A Cysteine rich protein B 98.0 0.00035 1.2E-08 48.8 13.7 15 272-286 111-125 (138)
207 3ma5_A Tetratricopeptide repea 98.0 5E-05 1.7E-09 49.7 8.4 64 46-111 6-69 (100)
208 3ma5_A Tetratricopeptide repea 97.8 0.0001 3.6E-09 48.2 8.1 63 117-179 6-68 (100)
209 3ly7_A Transcriptional activat 97.7 0.0028 9.5E-08 51.6 15.9 73 220-296 274-346 (372)
210 3ly7_A Transcriptional activat 97.6 0.0043 1.5E-07 50.5 15.3 133 80-215 191-338 (372)
211 3u64_A Protein TP_0956; tetrat 97.5 0.0037 1.3E-07 48.8 13.4 97 202-298 178-282 (301)
212 3mkq_A Coatomer beta'-subunit; 97.5 0.0077 2.6E-07 55.5 18.1 45 129-178 663-707 (814)
213 2kc7_A BFR218_protein; tetratr 97.4 0.00033 1.1E-08 45.5 5.9 59 53-113 6-65 (99)
214 2kc7_A BFR218_protein; tetratr 97.4 0.0028 9.5E-08 40.9 10.0 66 89-155 6-72 (99)
215 3bee_A Putative YFRE protein; 97.2 0.0077 2.6E-07 38.5 10.7 20 91-110 51-70 (93)
216 3bee_A Putative YFRE protein; 97.1 0.0068 2.3E-07 38.7 9.6 66 116-181 4-72 (93)
217 3qww_A SET and MYND domain-con 97.1 0.0012 4E-08 55.8 7.3 87 235-321 310-410 (433)
218 3qwp_A SET and MYND domain-con 97.1 0.0032 1.1E-07 53.1 9.9 87 199-285 299-398 (429)
219 3qww_A SET and MYND domain-con 97.1 0.0025 8.5E-08 53.8 9.1 86 201-286 312-410 (433)
220 3qwp_A SET and MYND domain-con 97.1 0.0031 1E-07 53.3 9.6 92 230-321 294-399 (429)
221 3mkq_B Coatomer subunit alpha; 97.0 0.042 1.5E-06 39.5 13.1 102 55-177 13-114 (177)
222 2v5f_A Prolyl 4-hydroxylase su 97.0 0.015 5.1E-07 38.0 10.3 63 190-252 8-75 (104)
223 2v5f_A Prolyl 4-hydroxylase su 96.9 0.012 4.1E-07 38.5 9.5 68 46-113 4-76 (104)
224 3lvg_A Clathrin heavy chain 1; 96.9 2.8E-06 9.7E-11 70.5 -9.8 242 49-313 56-324 (624)
225 4h7y_A Dual specificity protei 96.9 0.022 7.4E-07 39.5 10.5 115 44-161 10-137 (161)
226 4b4t_P 26S proteasome regulato 96.8 0.13 4.4E-06 43.6 17.4 252 15-271 29-306 (445)
227 1pc2_A Mitochondria fission pr 96.8 0.012 3.9E-07 41.3 8.7 85 201-287 12-100 (152)
228 3mkq_B Coatomer subunit alpha; 96.7 0.09 3.1E-06 37.8 14.4 102 91-212 13-114 (177)
229 1pc2_A Mitochondria fission pr 96.7 0.019 6.6E-07 40.1 9.6 81 100-181 15-100 (152)
230 3mkq_A Coatomer beta'-subunit; 96.7 0.052 1.8E-06 50.0 15.1 131 6-179 633-763 (814)
231 4ady_A RPN2, 26S proteasome re 96.4 0.56 1.9E-05 43.4 22.4 315 12-343 384-721 (963)
232 1wy6_A Hypothetical protein ST 96.4 0.12 4E-06 35.2 14.0 139 95-255 19-157 (172)
233 3u64_A Protein TP_0956; tetrat 96.3 0.058 2E-06 42.2 10.8 97 239-335 179-284 (301)
234 4h7y_A Dual specificity protei 96.3 0.089 3.1E-06 36.5 10.4 53 272-325 74-126 (161)
235 4ady_A RPN2, 26S proteasome re 96.1 0.7 2.4E-05 42.8 18.2 260 56-321 383-657 (963)
236 1nzn_A CGI-135 protein, fissio 95.7 0.17 5.8E-06 34.0 9.6 80 100-180 18-102 (126)
237 1nzn_A CGI-135 protein, fissio 95.5 0.15 5.3E-06 34.2 8.7 80 136-216 19-103 (126)
238 4b4t_P 26S proteasome regulato 95.4 1.1 3.7E-05 38.0 19.6 257 60-319 29-321 (445)
239 4gns_B Protein CSD3, chitin bi 95.2 0.37 1.3E-05 43.6 12.9 127 50-179 251-398 (754)
240 1wy6_A Hypothetical protein ST 95.1 0.48 1.6E-05 32.2 13.2 145 50-216 8-154 (172)
241 4fhn_B Nucleoporin NUP120; pro 95.1 1.1 3.9E-05 43.1 16.7 144 52-203 817-987 (1139)
242 1v54_E Cytochrome C oxidase po 94.8 0.45 1.5E-05 30.3 9.5 48 101-148 28-75 (109)
243 2ff4_A Probable regulatory pro 94.8 0.13 4.3E-06 42.8 8.3 73 154-227 173-249 (388)
244 2ff4_A Probable regulatory pro 94.5 0.39 1.3E-05 39.9 10.6 66 53-120 177-247 (388)
245 4fhn_B Nucleoporin NUP120; pro 94.4 1.2 4.1E-05 42.9 14.9 190 124-320 818-1048(1139)
246 4gns_B Protein CSD3, chitin bi 94.2 0.43 1.5E-05 43.2 10.8 53 231-284 345-397 (754)
247 3lvg_A Clathrin heavy chain 1; 94.1 0.0085 2.9E-07 50.4 -0.1 85 2-105 54-138 (624)
248 1qsa_A Protein (soluble lytic 94.0 3 0.0001 36.9 25.2 288 10-321 14-347 (618)
249 2y69_E Cytochrome C oxidase su 93.7 1 3.6E-05 30.4 9.5 63 98-160 68-130 (152)
250 1v54_E Cytochrome C oxidase po 93.5 0.39 1.3E-05 30.6 6.6 63 238-301 25-87 (109)
251 3ffl_A Anaphase-promoting comp 92.8 1.1 3.7E-05 31.7 8.8 24 192-215 68-91 (167)
252 3txn_A 26S proteasome regulato 92.4 4 0.00014 33.8 18.8 172 47-218 19-212 (394)
253 3o48_A Mitochondria fission 1 91.4 2.3 7.8E-05 28.8 8.6 24 229-252 84-107 (134)
254 1zbp_A Hypothetical protein VP 91.1 4.3 0.00015 31.4 13.3 53 94-147 8-60 (273)
255 2y69_E Cytochrome C oxidase su 91.0 1 3.6E-05 30.4 6.6 62 238-300 68-129 (152)
256 3lpz_A GET4 (YOR164C homolog); 90.9 5.3 0.00018 32.1 19.8 139 93-251 65-215 (336)
257 2wpv_A GET4, UPF0363 protein Y 90.4 5.8 0.0002 31.6 19.1 176 55-250 21-215 (312)
258 3ffl_A Anaphase-promoting comp 89.9 3.4 0.00012 29.2 8.9 122 47-180 20-150 (167)
259 1zbp_A Hypothetical protein VP 89.3 2.5 8.7E-05 32.6 8.5 117 126-252 5-129 (273)
260 1y8m_A FIS1; mitochondria, unk 88.7 4.4 0.00015 27.8 9.9 50 202-252 57-106 (144)
261 4b4t_R RPN7, 26S proteasome re 88.2 7.3 0.00025 32.8 11.5 62 189-250 133-195 (429)
262 3o48_A Mitochondria fission 1 88.1 4.6 0.00016 27.4 10.7 66 256-321 38-106 (134)
263 4b4t_R RPN7, 26S proteasome re 87.6 12 0.0004 31.5 15.4 100 152-251 131-236 (429)
264 2p58_C Putative type III secre 85.5 4.7 0.00016 25.7 6.5 56 94-155 51-106 (116)
265 3esl_A Checkpoint serine/threo 84.7 9.9 0.00034 27.9 10.0 69 79-147 73-144 (202)
266 2uwj_G Type III export protein 82.7 4.4 0.00015 25.7 5.5 53 94-152 50-102 (115)
267 3esl_A Checkpoint serine/threo 82.7 12 0.00042 27.4 9.3 56 131-186 92-149 (202)
268 1y8m_A FIS1; mitochondria, unk 82.2 10 0.00034 26.1 12.1 68 220-287 36-106 (144)
269 3txn_A 26S proteasome regulato 81.5 21 0.00073 29.5 22.2 242 84-329 20-290 (394)
270 4gq2_M Nucleoporin NUP120; bet 80.8 19 0.00066 33.9 11.8 48 119-166 898-950 (950)
271 1wdy_A 2-5A-dependent ribonucl 79.2 11 0.00036 29.0 8.5 82 52-142 7-93 (285)
272 1qsa_A Protein (soluble lytic 75.5 44 0.0015 29.7 20.6 177 62-244 229-434 (618)
273 3kea_A K1L; tropism, ANK repea 75.4 11 0.00037 29.4 7.5 12 59-70 40-51 (285)
274 2uwj_G Type III export protein 74.5 14 0.00048 23.5 6.1 89 95-193 18-108 (115)
275 4ets_A Ferric uptake regulatio 73.8 15 0.00051 25.9 7.0 73 203-276 13-87 (162)
276 2p58_C Putative type III secre 73.6 15 0.00051 23.4 7.0 90 94-193 18-109 (116)
277 4a1g_A Mitotic checkpoint seri 73.3 20 0.0007 24.9 9.8 66 79-147 64-130 (152)
278 1bpo_A Protein (clathrin); cla 73.1 36 0.0012 28.8 9.9 111 61-176 343-453 (494)
279 2d2s_A Exocyst complex compone 71.9 27 0.00093 26.4 8.4 30 220-249 88-117 (235)
280 4a1g_A Mitotic checkpoint seri 71.6 23 0.00077 24.7 9.0 50 137-186 84-135 (152)
281 2zu6_B Programmed cell death p 69.3 21 0.00073 28.3 7.6 58 50-110 6-65 (307)
282 2wvi_A Mitotic checkpoint seri 68.5 28 0.00097 24.6 10.2 66 79-147 59-125 (164)
283 4aez_C MAD3, mitotic spindle c 66.9 38 0.0013 25.4 8.9 46 101-146 132-178 (223)
284 2fu4_A Ferric uptake regulatio 66.7 18 0.00063 21.7 5.8 34 274-307 33-66 (83)
285 2fe3_A Peroxide operon regulat 66.5 23 0.00078 24.3 6.6 61 247-308 11-71 (145)
286 3ltm_A Alpha-REP4; protein eng 66.5 35 0.0012 24.8 19.0 30 221-251 155-184 (211)
287 1wdy_A 2-5A-dependent ribonucl 66.3 28 0.00097 26.5 8.0 50 268-317 189-240 (285)
288 4b4t_S RPN3, 26S proteasome re 65.9 65 0.0022 27.8 13.0 66 84-149 232-301 (523)
289 2wvi_A Mitotic checkpoint seri 65.3 33 0.0011 24.2 8.6 70 115-187 60-131 (164)
290 3eiq_C Programmed cell death p 63.9 58 0.002 26.5 9.8 69 226-295 220-290 (358)
291 3ltj_A Alpharep-4; protein eng 63.8 38 0.0013 24.4 18.6 29 221-250 150-178 (201)
292 3ltm_A Alpha-REP4; protein eng 63.1 41 0.0014 24.4 18.3 109 186-307 94-202 (211)
293 2d2s_A Exocyst complex compone 63.1 47 0.0016 25.1 9.2 90 53-145 24-118 (235)
294 2xig_A Ferric uptake regulatio 62.5 26 0.00088 24.3 6.3 62 246-308 15-76 (150)
295 2ion_A PDCD4, programmed cell 61.7 31 0.001 24.0 6.4 24 122-145 13-36 (152)
296 3hra_A Ankyrin repeat family p 61.3 20 0.00068 25.8 5.9 16 278-293 158-173 (201)
297 3qil_A Clathrin heavy chain 1; 61.2 4.7 0.00016 26.6 2.0 74 9-105 13-86 (125)
298 1mzb_A Ferric uptake regulatio 61.2 22 0.00075 24.1 5.6 60 248-308 8-68 (136)
299 3eiq_C Programmed cell death p 60.7 67 0.0023 26.2 11.4 201 120-329 56-289 (358)
300 2ion_A PDCD4, programmed cell 60.7 37 0.0012 23.6 6.7 24 190-213 12-35 (152)
301 2nsz_A Programmed cell death p 59.4 37 0.0013 22.8 8.0 23 190-212 10-32 (129)
302 2w57_A Ferric uptake regulatio 58.4 25 0.00086 24.3 5.6 60 248-308 7-67 (150)
303 2nsz_A Programmed cell death p 57.6 40 0.0014 22.6 7.7 24 122-145 11-34 (129)
304 1k1a_A B-cell lymphoma 3-encod 56.5 46 0.0016 24.6 7.4 13 59-71 18-30 (241)
305 3kea_A K1L; tropism, ANK repea 53.6 63 0.0022 24.9 7.9 230 60-318 9-243 (285)
306 3lpz_A GET4 (YOR164C homolog); 53.6 86 0.003 25.2 23.3 168 120-320 37-214 (336)
307 4ets_A Ferric uptake regulatio 52.6 31 0.0011 24.3 5.3 69 240-309 14-85 (162)
308 3eyy_A Putative iron uptake re 52.3 54 0.0018 22.5 6.6 12 170-181 35-46 (145)
309 3pvs_A Replication-associated 51.5 1.1E+02 0.0038 25.8 10.3 103 238-342 166-304 (447)
310 3eyy_A Putative iron uptake re 51.4 56 0.0019 22.4 6.7 64 211-276 7-70 (145)
311 2wpv_A GET4, UPF0363 protein Y 51.1 91 0.0031 24.8 21.3 133 121-271 36-178 (312)
312 2b7e_A PRE-mRNA processing pro 49.9 19 0.00066 20.2 3.0 29 169-197 3-31 (59)
313 4aez_C MAD3, mitotic spindle c 49.4 80 0.0027 23.6 8.3 53 240-292 131-184 (223)
314 2fe3_A Peroxide operon regulat 49.4 60 0.002 22.2 8.0 65 211-276 10-74 (145)
315 2xig_A Ferric uptake regulatio 49.3 62 0.0021 22.3 9.0 69 207-276 11-79 (150)
316 1mzb_A Ferric uptake regulatio 47.7 61 0.0021 21.8 7.1 64 212-276 7-71 (136)
317 3mwm_A ZUR, putative metal upt 47.7 20 0.00068 24.4 3.6 47 262-308 17-63 (139)
318 2w57_A Ferric uptake regulatio 47.5 65 0.0022 22.2 6.3 10 203-212 33-42 (150)
319 2zu6_B Programmed cell death p 46.8 1.1E+02 0.0037 24.3 12.3 64 261-325 169-234 (307)
320 1oai_A Nuclear RNA export fact 46.3 14 0.00047 20.8 2.1 25 60-84 33-57 (59)
321 2o03_A Probable zinc uptake re 44.5 67 0.0023 21.4 5.9 49 228-276 15-63 (131)
322 3ltj_A Alpharep-4; protein eng 42.4 91 0.0031 22.3 18.3 77 221-305 119-195 (201)
323 4gq2_M Nucleoporin NUP120; bet 42.2 1.9E+02 0.0065 27.4 10.2 108 229-342 816-950 (950)
324 1ug3_A EIF4GI, eukaryotic prot 42.0 1.3E+02 0.0046 24.1 8.6 25 121-145 14-38 (339)
325 2o03_A Probable zinc uptake re 41.3 34 0.0012 22.9 4.0 46 263-308 15-60 (131)
326 3mwm_A ZUR, putative metal upt 40.8 51 0.0017 22.4 4.8 48 228-275 18-65 (139)
327 3hra_A Ankyrin repeat family p 39.5 79 0.0027 22.4 6.2 15 13-27 13-27 (201)
328 1bpo_A Protein (clathrin); cla 39.2 1.8E+02 0.0062 24.8 12.7 84 96-182 342-425 (494)
329 3bu8_A Telomeric repeat-bindin 39.1 1.2E+02 0.004 22.6 7.6 14 168-181 88-101 (235)
330 3eu9_A Huntingtin-interacting 39.0 63 0.0022 23.7 5.7 19 301-319 215-233 (240)
331 2f6m_A Suppressor protein STP2 38.2 58 0.002 18.8 5.7 45 85-130 4-48 (65)
332 2ko4_A Mediator of RNA polymer 38.0 61 0.0021 19.4 4.0 35 40-74 29-63 (81)
333 3aji_A 26S proteasome non-ATPa 37.6 1.2E+02 0.004 22.1 8.1 19 90-108 10-28 (231)
334 1oyz_A Hypothetical protein YI 37.4 1.4E+02 0.0046 22.8 22.4 232 81-338 35-277 (280)
335 3ctd_A Putative ATPase, AAA fa 35.6 1.3E+02 0.0045 22.2 11.2 76 151-227 31-114 (213)
336 3aji_A 26S proteasome non-ATPa 33.1 1.4E+02 0.0048 21.7 7.1 51 54-106 10-60 (231)
337 4b4t_S RPN3, 26S proteasome re 33.0 2.4E+02 0.0082 24.4 12.3 62 187-252 231-299 (523)
338 2fu4_A Ferric uptake regulatio 32.8 79 0.0027 18.7 7.2 35 239-273 33-67 (83)
339 3jxi_A Vanilloid receptor-rela 32.2 26 0.00087 26.6 2.5 21 301-321 230-250 (260)
340 3c1d_A Protein ORAA, regulator 32.1 1.3E+02 0.0044 21.0 12.4 47 241-289 48-94 (159)
341 2ijq_A Hypothetical protein; s 31.8 1.3E+02 0.0046 21.1 8.5 52 164-215 44-103 (161)
342 2rfa_A Transient receptor pote 30.5 1.6E+02 0.0054 21.5 6.9 20 234-253 162-181 (232)
343 2p22_A Suppressor protein STP2 30.2 1.5E+02 0.0051 21.1 6.0 50 81-131 109-158 (174)
344 2ijq_A Hypothetical protein; s 29.9 1.4E+02 0.005 20.9 7.9 50 97-146 46-103 (161)
345 3rjo_A Endoplasmic reticulum a 28.8 2.5E+02 0.0086 23.3 16.2 165 156-326 201-373 (419)
346 2r9g_A AAA ATPase, central reg 27.2 1.9E+02 0.0064 21.3 11.6 81 153-235 12-100 (204)
347 3t5v_B Nuclear mRNA export pro 27.1 2.6E+02 0.009 23.7 7.8 30 225-254 178-207 (455)
348 1bd8_A P19INK4D CDK4/6 inhibit 26.8 92 0.0032 20.9 4.5 10 97-106 13-22 (156)
349 3t8k_A Uncharacterized protein 26.8 1.7E+02 0.0058 20.7 7.2 18 240-257 91-108 (186)
350 3bu8_A Telomeric repeat-bindin 26.5 2E+02 0.0069 21.4 12.9 48 134-181 88-143 (235)
351 1wty_A Hypothetical protein TT 26.2 1.4E+02 0.0048 19.5 7.2 26 258-284 53-78 (119)
352 2rfa_A Transient receptor pote 25.9 1.9E+02 0.0065 21.0 6.9 84 233-321 128-222 (232)
353 1k1a_A B-cell lymphoma 3-encod 25.7 1.9E+02 0.0066 21.0 8.5 88 90-178 13-102 (241)
354 3eu9_A Huntingtin-interacting 25.4 1.9E+02 0.0065 20.9 6.4 13 301-313 182-194 (240)
355 3qil_A Clathrin heavy chain 1; 25.2 47 0.0016 22.0 2.3 52 226-280 35-86 (125)
356 3bge_A Predicted ATPase; struc 25.1 2E+02 0.0069 21.0 10.1 45 157-201 9-56 (201)
357 2chq_A Replication factor C sm 25.1 2.4E+02 0.0082 21.8 14.7 28 263-291 233-261 (319)
358 2rg8_A Programmed cell death p 24.8 1.7E+02 0.0057 20.6 5.4 24 156-179 14-37 (165)
359 1wgl_A TOLL-interacting protei 24.7 1E+02 0.0034 17.3 4.2 24 304-327 34-57 (59)
360 2yru_A Steroid receptor RNA ac 24.0 1.6E+02 0.0054 19.4 5.9 40 175-214 49-88 (118)
361 2etb_A Transient receptor pote 23.8 88 0.003 23.4 4.2 14 304-317 229-242 (256)
362 1bd8_A P19INK4D CDK4/6 inhibit 23.4 1.4E+02 0.0048 19.9 4.9 20 53-72 5-24 (156)
363 2fv2_A RCD1 required for cell 23.1 2.6E+02 0.0089 21.5 6.8 47 238-284 188-235 (268)
364 1iqp_A RFCS; clamp loader, ext 23.0 2.7E+02 0.0092 21.7 13.0 84 205-291 173-269 (327)
365 1ug3_A EIF4GI, eukaryotic prot 22.7 3E+02 0.01 22.1 8.8 25 155-179 14-38 (339)
366 3bqo_A Telomeric repeat-bindin 22.3 2.3E+02 0.0078 20.8 5.5 19 127-145 126-144 (211)
367 1ya0_A SMG-7 transcript varian 22.1 3.8E+02 0.013 23.0 9.5 68 96-164 165-232 (497)
368 3b7b_A Euchromatic histone-lys 22.1 2.1E+02 0.0072 20.8 6.0 42 280-321 192-235 (237)
369 1uzc_A Hypothetical protein FL 21.8 88 0.003 18.3 2.9 28 275-303 15-43 (71)
370 3bqo_A Telomeric repeat-bindin 21.7 1E+02 0.0035 22.5 3.7 20 55-74 125-144 (211)
371 3l6a_A Eukaryotic translation 21.6 3.3E+02 0.011 22.2 11.2 186 156-341 16-246 (364)
372 2p22_A Suppressor protein STP2 21.1 86 0.003 22.3 3.2 48 258-306 111-158 (174)
373 2r9g_A AAA ATPase, central reg 21.0 2.5E+02 0.0086 20.6 10.3 64 51-116 15-86 (204)
374 2pnn_A Transient receptor pote 20.9 90 0.0031 23.7 3.7 18 301-318 238-255 (273)
375 3ljn_A Hypothetical protein; a 20.4 2.4E+02 0.0081 22.5 6.4 189 117-327 17-238 (364)
376 3ljn_A Hypothetical protein; a 20.4 3.3E+02 0.011 21.6 8.3 216 81-318 16-266 (364)
377 2rg8_A Programmed cell death p 20.3 1.3E+02 0.0043 21.2 4.0 27 225-251 12-38 (165)
378 2dod_A Transcription elongatio 20.2 1.1E+02 0.0039 18.5 3.2 31 275-306 17-48 (82)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.6e-35 Score=251.85 Aligned_cols=186 Identities=13% Similarity=0.200 Sum_probs=126.5
Q ss_pred cHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhc---------hHHHHHHHHHHHHHhcCCCCCHH
Q 038490 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL---------RVDEALKLKEDIMRVYNVKPDGQ 224 (344)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~ 224 (344)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+ ..+.|.++|++|.+ .|+.||..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~-~G~~Pd~~ 106 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV-DKVVPNEA 106 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH-TTCCCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH-hCCCCCHH
Confidence 456666666666666666666666666666666666666666665433 35666667766443 36667777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 038490 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304 (344)
Q Consensus 225 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 304 (344)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhh
Q 038490 305 KEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340 (344)
Q Consensus 305 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 340 (344)
+.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777766677777777766666654
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.3e-34 Score=245.85 Aligned_cols=213 Identities=14% Similarity=0.237 Sum_probs=154.3
Q ss_pred HHHHHHHhhhcCCCCCch-hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038490 66 MQQILHQLKHDTRIVPKE-IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM 144 (344)
Q Consensus 66 a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 144 (344)
+..+.+.+.+. +..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+....+
T Consensus 9 ~e~L~~~~~~k-~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 9 SENLSRKAKKK-AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred HHHHHHHHHHh-cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 44445555544 344433 457888899999999999999999999999999999999999888876643211
Q ss_pred hccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHH
Q 038490 145 EKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224 (344)
Q Consensus 145 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 224 (344)
.+.+.+++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..
T Consensus 81 ------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~g~~Pd~~ 141 (501)
T 4g26_A 81 ------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA-FGIQPRLR 141 (501)
T ss_dssp ------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHH
T ss_pred ------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCccc
Confidence 12344667777788887778888888888888888888888888888877543 47778888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 038490 225 VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFC 304 (344)
Q Consensus 225 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 304 (344)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.+++++|++.|..|+..||+.++..|.
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888777888888887777776
Q ss_pred c
Q 038490 305 K 305 (344)
Q Consensus 305 ~ 305 (344)
.
T Consensus 222 s 222 (501)
T 4g26_A 222 S 222 (501)
T ss_dssp S
T ss_pred c
Confidence 4
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-32 Score=242.56 Aligned_cols=333 Identities=11% Similarity=-0.002 Sum_probs=285.1
Q ss_pred CchhhhhhhhcccCCchHHhhhhcCCCCCCCC-----CCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 038490 3 TSSIRLACLPRLQKDPKLALQLFKNPNPNPND-----TEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 77 (344)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 77 (344)
.+...++..+.+.|++++|+++|+++.+.... .......+.+.+..+|+.++.+|.+.|++++|.++|+++.+..
T Consensus 151 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 230 (597)
T 2xpi_A 151 ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD 230 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 35667889999999999999999975333200 0000012345689999999999999999999999999998753
Q ss_pred CCCCchhHHHH--------------------------------------HHHHHHhcccHHHHHHHHHHHHhcCCCCCHH
Q 038490 78 RIVPKEIIFCN--------------------------------------VIGFYGRARLLERALQMFDEMSSFNVQMTVK 119 (344)
Q Consensus 78 ~~~~~~~~~~~--------------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 119 (344)
+.+...+.. ++..|.+.|++++|.++|+++.+. +++..
T Consensus 231 --p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 306 (597)
T 2xpi_A 231 --AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSD 306 (597)
T ss_dssp --TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHH
T ss_pred --chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHH
Confidence 222333332 255667889999999999999876 68999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHh
Q 038490 120 FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199 (344)
Q Consensus 120 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 199 (344)
+++.++.+|.+.|++++|..+|+++.+..+.+..++..++.++.+.|++++|..+++++.+.. +.+..++..++..|.+
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 385 (597)
T 2xpi_A 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLC 385 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 999999999999999999999999998888889999999999999999999999999998653 4578899999999999
Q ss_pred hchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHH
Q 038490 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPA 279 (344)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 279 (344)
.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.++. +..+|..++.+|.+.|++++|.+
T Consensus 386 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999988753 456889999999999999999999999999988654 88999999999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhC----CCCCC--hhhHHHHHHHHhhcCCC
Q 038490 280 ILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK----GCKAN--PISYNVILGGLCKDGKC 344 (344)
Q Consensus 280 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~ll~~~~~~g~~ 344 (344)
+|+++.+.... +..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++
T Consensus 463 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 463 YLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 99999987543 7899999999999999999999999999875 67787 78999999999999974
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.9e-31 Score=235.07 Aligned_cols=313 Identities=9% Similarity=-0.042 Sum_probs=279.9
Q ss_pred hhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhH
Q 038490 6 IRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEII 85 (344)
Q Consensus 6 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 85 (344)
..++..+.+.|++++|.++|+++... +++..+|+.++..+.+.|++++|.++|+++.+.. +.+..+
T Consensus 276 ~~~~~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 341 (597)
T 2xpi_A 276 MLKLNKTSHEDELRRAEDYLSSINGL------------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDV 341 (597)
T ss_dssp HTTSCTTTTHHHHHHHHHHHHTSTTG------------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTT
T ss_pred HHHHHHHcCcchHHHHHHHHHHhhcC------------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHH
Confidence 34578888999999999999998432 3589999999999999999999999999998763 457788
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhh
Q 038490 86 FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165 (344)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (344)
+..++.++.+.|++++|.++++.+.+.. +.+..+++.++.+|.+.|++++|..+|+++.+..+.+..+|+.++.+|.+.
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 420 (597)
T 2xpi_A 342 YPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIE 420 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999775 678899999999999999999999999999887778889999999999999
Q ss_pred CChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 038490 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245 (344)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 245 (344)
|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.+.|+++.+.. +.+..+|+.++..+.+.|++++|.++
T Consensus 421 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 497 (597)
T 2xpi_A 421 GEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINH 497 (597)
T ss_dssp TCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999874 4478899999999999999999999999988753 55789999999999999999999999
Q ss_pred HHHHHHC----CCCCC--HHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038490 246 KEEMVRD----KIEMD--AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319 (344)
Q Consensus 246 ~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 319 (344)
|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+. .+..+|..+..+|.+.|++++|.+.|+++
T Consensus 498 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST-NDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999876 55677 78999999999999999999999999998763 38899999999999999999999999999
Q ss_pred hhCCCCC-ChhhHHHHHHHHh
Q 038490 320 GDKGCKA-NPISYNVILGGLC 339 (344)
Q Consensus 320 ~~~~~~p-~~~~~~~ll~~~~ 339 (344)
.+. .| +...+..+..+|.
T Consensus 577 l~~--~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 577 LAI--SPNEIMASDLLKRALE 595 (597)
T ss_dssp HHH--CTTCHHHHHHHHHTTC
T ss_pred Hhc--CCCChHHHHHHHHHHh
Confidence 985 34 5667777766654
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=9.1e-28 Score=202.69 Aligned_cols=290 Identities=14% Similarity=0.017 Sum_probs=156.3
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (344)
+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+..++.+.|++++|.+.|+++.+.+ +.+...+..+.
T Consensus 66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 142 (388)
T 1w3b_A 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLG 142 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 44455555555555555555555555554431 2223345555555555555555555555555443 23334444455
Q ss_pred HHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHH
Q 038490 126 NPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205 (344)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (344)
..+...|++++|...|+++....+.+..+|..+...+.+.|++++|...|+++.+.+. .+...+..+...+...|++++
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555555544444445555555555555555555555555544321 133344444445555555555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHH
Q 038490 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMK 285 (344)
Q Consensus 206 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 285 (344)
|...+++.++.. +.+..++..+..++.+.|++++|...++++.+.++. +..+|..+...+.+.|++++|...|+++.
T Consensus 222 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 222 AVAAYLRALSLS--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555544431 223555666666666666666666666666665433 45566666666666666666666666666
Q ss_pred HcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCCC
Q 038490 286 ERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344 (344)
Q Consensus 286 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 344 (344)
+.. +.+..++..+...+.+.|++++|...++++.+. .+.+..++..+..+|.+.|++
T Consensus 299 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~ 355 (388)
T 1w3b_A 299 RLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCC
T ss_pred hhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCH
Confidence 553 225556666666666666666666666666653 122455566666666666653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.9e-27 Score=200.79 Aligned_cols=319 Identities=12% Similarity=-0.017 Sum_probs=278.7
Q ss_pred chhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch
Q 038490 4 SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE 83 (344)
Q Consensus 4 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 83 (344)
++..++..+.+.|++++|+..|+++... .+.+..+|..++.++.+.|++++|.+.|+++.+.. +.+.
T Consensus 69 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~ 135 (388)
T 1w3b_A 69 AYSNLGNVYKERGQLQEAIEHYRHALRL-----------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLY 135 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHc-----------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcH
Confidence 4677889999999999999999997433 23367789999999999999999999999998752 3345
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038490 84 IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCV 163 (344)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (344)
..+..+...+...|++++|.+.|+++.+.. +.+..+|..+..++...|++++|...|+++....+.+...+..+...+.
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 214 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 677788899999999999999999999876 6678899999999999999999999999999988888889999999999
Q ss_pred hhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 038490 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243 (344)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 243 (344)
..|++++|...+++..... +.+..++..+...+.+.|++++|...++++++.. +.+..++..+..++.+.|++++|.
T Consensus 215 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 215 EARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999988763 2357788899999999999999999999988753 456788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCC
Q 038490 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG 323 (344)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 323 (344)
..++++.+..+ .+..++..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...|+++.+.
T Consensus 292 ~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~- 368 (388)
T 1w3b_A 292 DCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI- 368 (388)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT-
T ss_pred HHHHHHHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence 99999998754 488999999999999999999999999998864 236788999999999999999999999999974
Q ss_pred CCC-ChhhHHHHHHHHhhcCC
Q 038490 324 CKA-NPISYNVILGGLCKDGK 343 (344)
Q Consensus 324 ~~p-~~~~~~~ll~~~~~~g~ 343 (344)
.| +...|..+-..+...|+
T Consensus 369 -~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 369 -SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp -CTTCHHHHHHHHHHHHHTCC
T ss_pred -CCCCHHHHHhHHHHHHHccC
Confidence 44 56778888877777664
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=3.7e-25 Score=190.36 Aligned_cols=311 Identities=11% Similarity=-0.006 Sum_probs=261.7
Q ss_pred chhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch
Q 038490 4 SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE 83 (344)
Q Consensus 4 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 83 (344)
....++..+.+.|++++|+.+|+.+... .+.+..+|..++.++...|++++|...|+++.+.. +.+.
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~ 94 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDG-----------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFT 94 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcH
Confidence 3566788899999999999999997432 33478899999999999999999999999998863 4567
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCH---HHHHHH------------HHHHHhcCChHHHHHHHHHHhccC
Q 038490 84 IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV---KFFNTL------------LNPKLTCGKLDRMKELFQIMEKYV 148 (344)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~ 148 (344)
.++..+..++.+.|++++|.+.|+.+.+.+ +.+. ..+..+ ...+...|++++|...|+++....
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 173 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 889999999999999999999999999875 3444 555555 444889999999999999999888
Q ss_pred CCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038490 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228 (344)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 228 (344)
+.+..++..+..+|.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++++++.. +.+...+..
T Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~ 250 (450)
T 2y4t_A 174 VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAH 250 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHH
Confidence 8888999999999999999999999999998763 3467889999999999999999999999988653 334555554
Q ss_pred H------------HHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCC
Q 038490 229 L------------IKGLCAVGELSLALGVKEEMVRDKIEMD----AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292 (344)
Q Consensus 229 l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 292 (344)
+ ...+.+.|++++|...++++.+..+. + ...+..+...+.+.|++++|+..++++..... .+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~ 328 (450)
T 2y4t_A 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP-DN 328 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-cc
Confidence 4 78899999999999999999986433 3 44788899999999999999999999988743 37
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC-hhhHHHHH
Q 038490 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN-PISYNVIL 335 (344)
Q Consensus 293 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll 335 (344)
...|..+..+|...|++++|...++++.+. .|+ ...+..+-
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 789999999999999999999999999974 454 45555554
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=3.4e-24 Score=184.36 Aligned_cols=294 Identities=12% Similarity=0.038 Sum_probs=253.0
Q ss_pred CCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHH
Q 038490 41 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120 (344)
Q Consensus 41 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 120 (344)
...+.+...|..++..+.+.|++++|+.+|+++.+. .+.+..++..+..++...|++++|...|+++.+.+ +.+..+
T Consensus 20 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 96 (450)
T 2y4t_A 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAA 96 (450)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 334558899999999999999999999999999875 35678899999999999999999999999999987 667889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhccCCCCc---ccHHHHH------------HHHHhhCChhHHHHHHHHHhhCCCCc
Q 038490 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDA---CSYNILI------------HGCVVSRRLEDAWKVFDEMVKRRLQP 185 (344)
Q Consensus 121 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~------------~~~~~~~~~~~a~~~~~~~~~~~~~~ 185 (344)
+..+..+|...|++++|...|+++....+.+. ..+..+. ..+.+.|++++|...|+++.+.. +.
T Consensus 97 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 175 (450)
T 2y4t_A 97 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VW 175 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 99999999999999999999999998776655 6666654 44899999999999999998763 34
Q ss_pred CHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-
Q 038490 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL- 264 (344)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l- 264 (344)
+...+..+..++.+.|++++|...++++++.. +.+..++..+..++...|++++|...++++....+. +...+..+
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~ 252 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYK 252 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHH
Confidence 77888899999999999999999999988764 567889999999999999999999999999986543 55555555
Q ss_pred -----------HHHHHHcCCcCcHHHHHHHHHHcCCCCC-----hhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCh
Q 038490 265 -----------ISALFKAGRKNEFPAILKEMKERGCKPN-----SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP 328 (344)
Q Consensus 265 -----------~~~~~~~g~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 328 (344)
...+...|++++|...|+++.+.. |+ ...+..+...+.+.|++++|...++++.+.. +.+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~ 329 (450)
T 2y4t_A 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccH
Confidence 889999999999999999998864 44 3478888999999999999999999998752 3368
Q ss_pred hhHHHHHHHHhhcCCC
Q 038490 329 ISYNVILGGLCKDGKC 344 (344)
Q Consensus 329 ~~~~~ll~~~~~~g~~ 344 (344)
..|..+..+|...|++
T Consensus 330 ~~~~~l~~~~~~~~~~ 345 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMY 345 (450)
T ss_dssp HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcCH
Confidence 8999999999998874
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=3.9e-23 Score=172.11 Aligned_cols=315 Identities=11% Similarity=-0.020 Sum_probs=262.7
Q ss_pred chhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch
Q 038490 4 SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE 83 (344)
Q Consensus 4 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 83 (344)
....++..+...|++++|+..|+++... .+.+..+|..+..++...|++++|...++++.+.. +.+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~ 71 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDG-----------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFT 71 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcc
Confidence 4567888999999999999999997443 33378899999999999999999999999998852 4467
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC---CCHHHHHHH------------HHHHHhcCChHHHHHHHHHHhccC
Q 038490 84 IIFCNVIGFYGRARLLERALQMFDEMSSFNVQ---MTVKFFNTL------------LNPKLTCGKLDRMKELFQIMEKYV 148 (344)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~ 148 (344)
..+..+..++...|++++|...|+.+.+.. + .+...+..+ ...+...|++++|...++++....
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 889999999999999999999999999875 3 345555555 578899999999999999999888
Q ss_pred CCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHH-
Q 038490 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFA- 227 (344)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 227 (344)
+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++++.. +.+...+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~ 227 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAH 227 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHH
Confidence 8888999999999999999999999999998874 4477888899999999999999999999988764 33344333
Q ss_pred -----------HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCC
Q 038490 228 -----------SLIKGLCAVGELSLALGVKEEMVRDKIEMDA----GIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292 (344)
Q Consensus 228 -----------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 292 (344)
.+...+.+.|++++|...++++.+..+. +. ..+..+...+...|++++|...+++..+... .+
T Consensus 228 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~ 305 (359)
T 3ieg_A 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP-DN 305 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-cc
Confidence 2366788999999999999999986544 33 2355678899999999999999999988743 27
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHh
Q 038490 293 SVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN-PISYNVILGGLC 339 (344)
Q Consensus 293 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~ 339 (344)
...+..+...+...|++++|...|+++.+. .|+ ...+..+..+..
T Consensus 306 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 306 VNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 788999999999999999999999999975 354 556666665544
No 10
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=3.5e-22 Score=164.52 Aligned_cols=295 Identities=10% Similarity=-0.029 Sum_probs=250.5
Q ss_pred CCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHH
Q 038490 41 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKF 120 (344)
Q Consensus 41 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 120 (344)
...+.+...+..++..+...|++++|.++|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...
T Consensus 16 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 92 (330)
T 3hym_B 16 DGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVS 92 (330)
T ss_dssp ----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHH
T ss_pred hhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHH
Confidence 3445577888899999999999999999999998863 4556677778889999999999999999999876 667888
Q ss_pred HHHHHHHHHhcC-ChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHh
Q 038490 121 FNTLLNPKLTCG-KLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199 (344)
Q Consensus 121 ~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 199 (344)
+..+...+...| ++++|...|++.....+.+...|..+...+...|++++|...++++.+.... +...+..+...+..
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence 999999999999 9999999999999888888889999999999999999999999999887432 45667778889999
Q ss_pred hchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHc
Q 038490 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK--------IEMDAGIYSSLISALFKA 271 (344)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 271 (344)
.|++++|...++++++.. +.+...+..+...+...|++++|...++++.+.. .+.+..++..+...+...
T Consensus 172 ~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp TTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 999999999999987643 5568889999999999999999999999998742 133567899999999999
Q ss_pred CCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH-hhcCC
Q 038490 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGL-CKDGK 343 (344)
Q Consensus 272 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~-~~~g~ 343 (344)
|++++|...+++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..++ ...|+
T Consensus 250 g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 250 KKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred cCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 9999999999999887543 67889999999999999999999999998753 23667777777777 44443
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=2.8e-22 Score=165.05 Aligned_cols=291 Identities=11% Similarity=-0.023 Sum_probs=247.6
Q ss_pred CchhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCc
Q 038490 3 TSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK 82 (344)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 82 (344)
.....++..+...|++++|+++|+.+... .+.+...+..++.++...|++++|..+++++.+.. +.+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~ 89 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEK-----------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSN 89 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCC
Confidence 34566788888899999999999997443 23366778888899999999999999999998853 456
Q ss_pred hhHHHHHHHHHHhcc-cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHH
Q 038490 83 EIIFCNVIGFYGRAR-LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 161 (344)
...+..+...+...| ++++|.+.|+++.+.. +.+...+..+..++...|++++|...++++....+.+...+..+...
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 168 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLE 168 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 788889999999999 9999999999999876 56678899999999999999999999999998887778888889999
Q ss_pred HHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHH
Q 038490 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN-------VKPDGQVFASLIKGLC 234 (344)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~ 234 (344)
|...|++++|...++++.+.. +.+...+..+...+...|++++|...++++++... .+....++..+..++.
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~ 247 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH
Confidence 999999999999999998874 34678888899999999999999999999877531 1334678899999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHH-hccCCHH
Q 038490 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF-CKEEDFE 310 (344)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~ 310 (344)
..|++++|...+++..+..+. +...+..+...+...|++++|...+++..+.... +...+..+..++ ...|+.+
T Consensus 248 ~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 248 KLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC--
T ss_pred HhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCchh
Confidence 999999999999999987654 7889999999999999999999999999876432 667777777777 4556543
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.2e-22 Score=177.47 Aligned_cols=319 Identities=8% Similarity=-0.094 Sum_probs=171.0
Q ss_pred hhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchh
Q 038490 5 SIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI 84 (344)
Q Consensus 5 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 84 (344)
+...+..+.+.|++++|+..|+++.... |+..+|..++.++.+.|++++|...++++.+.. +.+..
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~------------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~ 74 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK------------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSK 74 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC------------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHH
Confidence 3445666667777777777777763321 256667777777777777777777777766642 33455
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCC--------------------------------------------------
Q 038490 85 IFCNVIGFYGRARLLERALQMFDEMSSFNV-------------------------------------------------- 114 (344)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------------------------------------------- 114 (344)
++..+..++...|++++|...|+.+.+.+.
T Consensus 75 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (514)
T 2gw1_A 75 VLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK 154 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh
Confidence 666666777777777777766666654331
Q ss_pred -------------------------------------------------------------------------------C
Q 038490 115 -------------------------------------------------------------------------------Q 115 (344)
Q Consensus 115 -------------------------------------------------------------------------------~ 115 (344)
+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (514)
T 2gw1_A 155 QENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234 (514)
T ss_dssp --CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHH
T ss_pred ccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccCh
Confidence 0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHH
Q 038490 116 MTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195 (344)
Q Consensus 116 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 195 (344)
.+..++..+...+...|++++|...++++....+. ...+..+...+...|++++|...++++.... +.+...+..+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 312 (514)
T 2gw1_A 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHH
Confidence 11223333333444444444444444444433323 4444444444444455555555554444432 123344444555
Q ss_pred HHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcC
Q 038490 196 GLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275 (344)
Q Consensus 196 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 275 (344)
.+...|++++|...++++++.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|+++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELD--PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHH
Confidence 5555555555555555554432 223445555555555556666666665555554322 4455555666666666666
Q ss_pred cHHHHHHHHHHcCCC-CC----hhhHHHHHHHHhc---cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCC
Q 038490 276 EFPAILKEMKERGCK-PN----SVTYNALISGFCK---EEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343 (344)
Q Consensus 276 ~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 343 (344)
+|...++++...... ++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...|.+.|+
T Consensus 390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcC
Confidence 666666655543211 01 1255555666666 666666666666665532 2244555556666655554
No 13
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=5.5e-22 Score=166.00 Aligned_cols=295 Identities=8% Similarity=-0.106 Sum_probs=220.1
Q ss_pred hcccCCchHHhh-hhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHH
Q 038490 12 PRLQKDPKLALQ-LFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI 90 (344)
Q Consensus 12 ~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 90 (344)
+...|++++|+. .|++.....+ .....+...+..+...+.+.|++++|...|+++.+. .+.+..++..+.
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~ 105 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEE-------ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLG 105 (368)
T ss_dssp -----------CHHHHCCCCCCS-------SCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCC-------CCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 344578888888 7776543321 011114566788888999999999999999998875 255677888888
Q ss_pred HHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHH------------
Q 038490 91 GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL------------ 158 (344)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l------------ 158 (344)
.++...|++++|...|+++.+.+ +.+..++..+..++...|++++|...++++....+.+...+..+
T Consensus 106 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 1fch_A 106 TTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 184 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------
T ss_pred HHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHH
Confidence 99999999999999999998876 66788889999999999999999999999888766444444321
Q ss_pred ---HHHHHhhCChhHHHHHHHHHhhCCCCc-CHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038490 159 ---IHGCVVSRRLEDAWKVFDEMVKRRLQP-TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC 234 (344)
Q Consensus 159 ---~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 234 (344)
+..+...|++++|...++++.+..... +..++..+...+...|++++|...++++++.. +.+..++..+..++.
T Consensus 185 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~ 262 (368)
T 1fch_A 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLA 262 (368)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHH
Confidence 333448889999999999888763221 46778888888889999999999998887753 456778888888899
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCC----------ChhhHHHHHHHHh
Q 038490 235 AVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKP----------NSVTYNALISGFC 304 (344)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p----------~~~~~~~l~~~~~ 304 (344)
..|++++|...++++.+..+. +...+..+..+|...|++++|...|+++....... ...+|..+..++.
T Consensus 263 ~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 263 NGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 999999999999998876543 67888888999999999999999998887653221 1577888888999
Q ss_pred ccCCHHHHHHHHHHH
Q 038490 305 KEEDFEAAFTILDEM 319 (344)
Q Consensus 305 ~~~~~~~a~~~~~~~ 319 (344)
..|++++|..++++.
T Consensus 342 ~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 342 MLGQSDAYGAADARD 356 (368)
T ss_dssp HHTCGGGHHHHHTTC
T ss_pred HhCChHhHHHhHHHH
Confidence 999999888877643
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=7.8e-21 Score=158.17 Aligned_cols=290 Identities=12% Similarity=0.032 Sum_probs=245.8
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (344)
++..+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 56788899999999999999999999998863 5567889999999999999999999999999876 56788999999
Q ss_pred HHHHhcCChHHHHHHHHHHhccCC---CCcccHHHH------------HHHHHhhCChhHHHHHHHHHhhCCCCcCHhhH
Q 038490 126 NPKLTCGKLDRMKELFQIMEKYVS---PDACSYNIL------------IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190 (344)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 190 (344)
.++...|++++|...++++....+ .+...+..+ ...+...|++++|...++++.+.. +.+...+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 999999999999999999988766 556666555 578899999999999999998774 3467788
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--------
Q 038490 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYS-------- 262 (344)
Q Consensus 191 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------- 262 (344)
..+...+...|++++|...++++++.. +.+...+..+...+...|++++|...+++..+..+. +...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK--SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHH
Confidence 889999999999999999999987643 567889999999999999999999999999987543 444443
Q ss_pred ----HHHHHHHHcCCcCcHHHHHHHHHHcCCCCCh----hhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 038490 263 ----SLISALFKAGRKNEFPAILKEMKERGCKPNS----VTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVI 334 (344)
Q Consensus 263 ----~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 334 (344)
.+...+...|++++|...++++.+.... +. ..+..+...+...|++++|...+++..+.. +.+...|..+
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 312 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 2366789999999999999999887433 33 234557788999999999999999999852 3377889999
Q ss_pred HHHHhhcCCC
Q 038490 335 LGGLCKDGKC 344 (344)
Q Consensus 335 l~~~~~~g~~ 344 (344)
...+.+.|++
T Consensus 313 ~~~~~~~g~~ 322 (359)
T 3ieg_A 313 AEAYLIEEMY 322 (359)
T ss_dssp HHHHHHTTCH
T ss_pred HHHHHHcCCH
Confidence 9999988874
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=1.4e-21 Score=163.51 Aligned_cols=267 Identities=10% Similarity=-0.113 Sum_probs=220.4
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (344)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|+..|+++.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 55668889999999999999999999998863 5567889999999999999999999999999876 66788999999
Q ss_pred HHHHhcCChHHHHHHHHHHhccCCCCcccH----------HHHHHHHHhhCChhHHHHHHHHHhhCCCC-cCHhhHHHHH
Q 038490 126 NPKLTCGKLDRMKELFQIMEKYVSPDACSY----------NILIHGCVVSRRLEDAWKVFDEMVKRRLQ-PTLVTFGTLI 194 (344)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 194 (344)
.+|...|++++|...++++....+.+...+ ..+...+...|++++|...++++.+.... ++..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999999987655333333 34578899999999999999999886322 1577888899
Q ss_pred HHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCc
Q 038490 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK 274 (344)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 274 (344)
..+...|++++|...++++++.. +.+..++..+..++...|++++|...++++.+..+. +..++..+..+|...|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence 99999999999999999988763 556889999999999999999999999999987544 688999999999999999
Q ss_pred CcHHHHHHHHHHcCCC-----------CChhhHHHHHHHHhccCCHHHHHHHHHH
Q 038490 275 NEFPAILKEMKERGCK-----------PNSVTYNALISGFCKEEDFEAAFTILDE 318 (344)
Q Consensus 275 ~~a~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 318 (344)
++|...|+++.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998775211 1357788999999999999888877654
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=3.2e-21 Score=161.30 Aligned_cols=284 Identities=11% Similarity=-0.033 Sum_probs=227.1
Q ss_pred HHhcCCchHHHH-HHHHhhhcCCCCC--chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038490 57 LGRAKMFDEMQQ-ILHQLKHDTRIVP--KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133 (344)
Q Consensus 57 ~~~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 133 (344)
+.-.|++++|.+ .+++......-.| +...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344588999998 8887664321122 34567888999999999999999999999886 6788899999999999999
Q ss_pred hHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHH---------------HHHHHH
Q 038490 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT---------------LIYGLC 198 (344)
Q Consensus 134 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~ 198 (344)
+++|...++++....+.+..++..+...+...|++++|...++++...... +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999999888888899999999999999999999999999887433 2222211 233444
Q ss_pred hhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHH
Q 038490 199 LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFP 278 (344)
Q Consensus 199 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 278 (344)
..|++++|...++++++.....++..++..+...+...|++++|...++++.+..+. +..++..+...+...|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999998876433336889999999999999999999999999987544 7889999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC----------CChhhHHHHHHHHhhcCCC
Q 038490 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK----------ANPISYNVILGGLCKDGKC 344 (344)
Q Consensus 279 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------p~~~~~~~ll~~~~~~g~~ 344 (344)
..++++.+... .+...+..+..++.+.|++++|...|+++.+.... ....+|..+..+|.+.|++
T Consensus 272 ~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 272 AAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 99999988743 36788999999999999999999999999863211 0167899999999988874
No 17
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=8e-21 Score=166.98 Aligned_cols=319 Identities=10% Similarity=-0.061 Sum_probs=211.8
Q ss_pred hhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchh
Q 038490 5 SIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEI 84 (344)
Q Consensus 5 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 84 (344)
+..++..+.+.|++++|+..|+++... .+.+..+|..+..++.+.|++++|++.++++.+.. +.+..
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~ 94 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIEL-----------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSK 94 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhh-----------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHH
Confidence 456788888999999999999997443 33478889999999999999999999999988753 45677
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHH------------------------------------------------------
Q 038490 85 IFCNVIGFYGRARLLERALQMFDEMS------------------------------------------------------ 110 (344)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~------------------------------------------------------ 110 (344)
++..+..++...|++++|...|+.+.
T Consensus 95 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 95 ALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 88888888888888888888774331
Q ss_pred -------------------------------------------------------hcCCCCC-------HHHHHHHHHHH
Q 038490 111 -------------------------------------------------------SFNVQMT-------VKFFNTLLNPK 128 (344)
Q Consensus 111 -------------------------------------------------------~~~~~~~-------~~~~~~l~~~~ 128 (344)
+.. +.+ ..++..+...+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHH
Confidence 111 111 11244444555
Q ss_pred HhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHH
Q 038490 129 LTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALK 208 (344)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 208 (344)
...|++++|...++++....+. ...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|..
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 6666777777777766655433 5666666667777777777777777766553 2245566666677777777777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcC
Q 038490 209 LKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288 (344)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 288 (344)
.++++++.. +.+...+..+..++...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+..
T Consensus 332 ~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 332 DFQKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 777766543 334556666777777777777777777777765433 56667777777777777777777777765542
Q ss_pred CCC-----ChhhHHHHHHHHhcc----------CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCC
Q 038490 289 CKP-----NSVTYNALISGFCKE----------EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343 (344)
Q Consensus 289 ~~p-----~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 343 (344)
... ....+......+... |++++|...++++.+.. +.+...+..+...|.+.|+
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc
Confidence 110 111123334455555 77777777777776642 2355667777777777765
No 18
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.3e-20 Score=163.12 Aligned_cols=289 Identities=11% Similarity=0.038 Sum_probs=242.7
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (344)
....|......+.+.|++++|+..|+++... .|+..++..+..++.+.|++++|.+.++++.+.+ +.+..++..+.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 80 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHH
Confidence 4567888999999999999999999999986 3789999999999999999999999999999887 67788999999
Q ss_pred HHHHhcCChHHHHHHHHHHhccCCCCccc---------------------------------------------------
Q 038490 126 NPKLTCGKLDRMKELFQIMEKYVSPDACS--------------------------------------------------- 154 (344)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------------------------------------------- 154 (344)
.++...|++++|...|+++....+++...
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 99999999999999999987765433222
Q ss_pred ----------------------------HHHHHHHHH---hhCChhHHHHHHHHHhh-----CCC--------CcCHhhH
Q 038490 155 ----------------------------YNILIHGCV---VSRRLEDAWKVFDEMVK-----RRL--------QPTLVTF 190 (344)
Q Consensus 155 ----------------------------~~~l~~~~~---~~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~ 190 (344)
+......+. +.|++++|...|+++.+ ... +.+...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 222222233 37999999999999987 311 2235567
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 038490 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270 (344)
Q Consensus 191 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 270 (344)
..+...+...|++++|...++++++.. |+...+..+..++...|++++|...++++.+..+. +...+..+...+..
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHH
Confidence 778888999999999999999988763 33888899999999999999999999999987644 77889999999999
Q ss_pred cCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCCC
Q 038490 271 AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGKC 344 (344)
Q Consensus 271 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 344 (344)
.|++++|...++++...... +...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 388 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDF 388 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCH
T ss_pred hCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCH
Confidence 99999999999999987544 67788889999999999999999999998752 33667888888888888863
No 19
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.89 E-value=8.6e-21 Score=155.96 Aligned_cols=268 Identities=6% Similarity=-0.104 Sum_probs=228.6
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (344)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 55678888999999999999999999998853 4567888899999999999999999999999886 66788999999
Q ss_pred HHHHhcCChHHHHHHHHHHhccCCCCcccHHHH--------------HH-HHHhhCChhHHHHHHHHHhhCCCCcCHhhH
Q 038490 126 NPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL--------------IH-GCVVSRRLEDAWKVFDEMVKRRLQPTLVTF 190 (344)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 190 (344)
.++...|++++|...++++....+.+...+..+ .. .+...|++++|...++++.+.. +.+...+
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 999999999999999999988776555555554 33 4788899999999999998774 3367888
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 038490 191 GTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270 (344)
Q Consensus 191 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 270 (344)
..+...+...|++++|...++++++.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...+..
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 889999999999999999999988763 456888999999999999999999999999887544 78899999999999
Q ss_pred cCCcCcHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHhccCCHHHHHHHHHHHh
Q 038490 271 AGRKNEFPAILKEMKERGCKP-----------NSVTYNALISGFCKEEDFEAAFTILDEMG 320 (344)
Q Consensus 271 ~g~~~~a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 320 (344)
.|++++|...++++....... +...+..+..++...|++++|..++++..
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999998764331 46788889999999999999999987554
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=1.7e-20 Score=156.89 Aligned_cols=259 Identities=9% Similarity=-0.080 Sum_probs=214.1
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHH
Q 038490 82 KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161 (344)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 161 (344)
+...+..+...+.+.|++++|.+.|+.+.+.. +.+..++..+..++...|++++|...|+++....+.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34558888999999999999999999999886 67889999999999999999999999999998888888999999999
Q ss_pred HHhhCChhHHHHHHHHHhhCCCCc---------CHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038490 162 CVVSRRLEDAWKVFDEMVKRRLQP---------TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG 232 (344)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 232 (344)
|...|++++|...++++.+..... ....+..+...+...|++++|...++++++......+..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 999999999999999998753110 01223345778899999999999999998875333378899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHH
Q 038490 233 LCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAA 312 (344)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 312 (344)
+...|++++|...++++.+..+. +..+|..+..+|...|++++|...|+++.+.... +...+..+..+|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999987644 7899999999999999999999999999987433 678899999999999999999
Q ss_pred HHHHHHHhhCC---CC--------CChhhHHHHHHHHhhcCC
Q 038490 313 FTILDEMGDKG---CK--------ANPISYNVILGGLCKDGK 343 (344)
Q Consensus 313 ~~~~~~~~~~~---~~--------p~~~~~~~ll~~~~~~g~ 343 (344)
...|+++.+.. .. .+...|..+..++...|+
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence 99999997532 00 136778888888877765
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.87 E-value=1.5e-20 Score=154.56 Aligned_cols=264 Identities=9% Similarity=-0.070 Sum_probs=222.2
Q ss_pred chhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch
Q 038490 4 SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE 83 (344)
Q Consensus 4 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 83 (344)
.+..++..+...|++++|+.+|+.+... .+.+..+|..+..++...|++++|...++++.+.. +.+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~ 89 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQA-----------APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDI 89 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCH
Confidence 3467788899999999999999997443 23378889999999999999999999999998863 5567
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHhccC
Q 038490 84 IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL--------------LN-PKLTCGKLDRMKELFQIMEKYV 148 (344)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~ 148 (344)
.++..+...+...|++++|.+.++.+.+.. +.+...+..+ .. .+...|++++|...++++....
T Consensus 90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 168 (327)
T 3cv0_A 90 AVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN 168 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC
Confidence 888999999999999999999999999865 3333344333 33 4778899999999999999888
Q ss_pred CCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038490 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228 (344)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 228 (344)
+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++++.. +.+...+..
T Consensus 169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~ 245 (327)
T 3cv0_A 169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGYVRVMYN 245 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHH
Confidence 8888999999999999999999999999998763 3367788899999999999999999999988763 456888999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCCcCcHHHHHHHH
Q 038490 229 LIKGLCAVGELSLALGVKEEMVRDKIEM-----------DAGIYSSLISALFKAGRKNEFPAILKEM 284 (344)
Q Consensus 229 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 284 (344)
+..++...|++++|...++++.+..+.. +...+..+..++...|++++|..++++.
T Consensus 246 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999999999998764332 4778899999999999999999988754
No 22
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1e-19 Score=159.91 Aligned_cols=302 Identities=11% Similarity=-0.021 Sum_probs=245.1
Q ss_pred chhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcC------
Q 038490 4 SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT------ 77 (344)
Q Consensus 4 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 77 (344)
.+..++..+...|++++|++.|+++... .+.+..++..+..++...|++++|...|+.+....
T Consensus 61 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 129 (537)
T 3fp2_A 61 FYSNISACYISTGDLEKVIEFTTKALEI-----------KPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGAS 129 (537)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHH
Confidence 4567788888999999999999887433 23377888888999999999888888774331100
Q ss_pred --------------------------------------------------------------------------------
Q 038490 78 -------------------------------------------------------------------------------- 77 (344)
Q Consensus 78 -------------------------------------------------------------------------------- 77 (344)
T Consensus 130 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 209 (537)
T 3fp2_A 130 IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDE 209 (537)
T ss_dssp --CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhh
Confidence
Q ss_pred --------------------CCCCc--------hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038490 78 --------------------RIVPK--------EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL 129 (344)
Q Consensus 78 --------------------~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (344)
...|+ ..++..+...+...|++++|...|+.+.+.. |+...+..+...+.
T Consensus 210 ~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 287 (537)
T 3fp2_A 210 GYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLA 287 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHH
Confidence 01122 1235555667788899999999999999874 55888999999999
Q ss_pred hcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHH
Q 038490 130 TCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209 (344)
Q Consensus 130 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 209 (344)
..|++++|...++++....+.+..++..+...+...|++++|...++++.+... .+...+..+...+...|++++|...
T Consensus 288 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999988888889999999999999999999999999988642 3567788899999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHc----------CCc
Q 038490 210 KEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE-----MDAGIYSSLISALFKA----------GRK 274 (344)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~----------g~~ 274 (344)
++++++.. +.+...+..+...+...|++++|...++++.+..+. .....+..+...+... |++
T Consensus 367 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 444 (537)
T 3fp2_A 367 FNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444 (537)
T ss_dssp HHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHH
T ss_pred HHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHH
Confidence 99988764 556778899999999999999999999998765321 1223345556777777 999
Q ss_pred CcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 038490 275 NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322 (344)
Q Consensus 275 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 322 (344)
++|...|+++.+.... +...+..+...+...|++++|...|++..+.
T Consensus 445 ~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 445 NAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999987543 6788999999999999999999999999875
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=2.6e-18 Score=138.40 Aligned_cols=253 Identities=10% Similarity=0.043 Sum_probs=201.5
Q ss_pred hhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHH
Q 038490 11 LPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVI 90 (344)
Q Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 90 (344)
.....|++..|+..++.+....+ .........+.++|...|+++.|+..++. . -+|+..++..+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p----------~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~--~~~~~~a~~~la 72 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSP----------ERDVERDVFLYRAYLAQRKYGVVLDEIKP---S--SAPELQAVRMFA 72 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSH----------HHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T--SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCc----------hhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c--CChhHHHHHHHH
Confidence 34457999999999877633221 01134556678999999999999986644 1 356778888899
Q ss_pred HHHHhcccHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChh
Q 038490 91 GFYGRARLLERALQMFDEMSSFNV-QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169 (344)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 169 (344)
..+...++.++|++.++++...+. +.+...+..+..++...|++++|...+++ +.+...+..++..+.+.|+++
T Consensus 73 ~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999987764 44667777888999999999999999987 467788999999999999999
Q ss_pred HHHHHHHHHhhCCCCcCHhhHH---HHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 038490 170 DAWKVFDEMVKRRLQPTLVTFG---TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVK 246 (344)
Q Consensus 170 ~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 246 (344)
+|.+.|+++.+.. |+..... .++..+...|++++|..+|+++++.. +.+...++.+..++.+.|++++|...+
T Consensus 148 ~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l 223 (291)
T 3mkr_A 148 LARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVL 223 (291)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998773 4432211 22233445589999999999988763 668889999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcCc-HHHHHHHHHHcC
Q 038490 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNE-FPAILKEMKERG 288 (344)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~ 288 (344)
++..+..+. +..++..++..+...|+.++ +.++++++.+..
T Consensus 224 ~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 224 QEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 999987655 88899999999999999876 578999988874
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=2.2e-18 Score=138.87 Aligned_cols=251 Identities=10% Similarity=0.009 Sum_probs=205.7
Q ss_pred HHHHHhcCCchHHHHHHHHhhhcCCCCCch--hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038490 54 ITKLGRAKMFDEMQQILHQLKHDTRIVPKE--IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131 (344)
Q Consensus 54 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 131 (344)
++-....|+++.|+..++..... .|+. .....+.++|...|+++.|+..++. .. +|+..++..+...+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~-~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SS-APELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TS-CHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cC-ChhHHHHHHHHHHHcCC
Confidence 45567789999999999887543 3443 3556678999999999999987654 22 67778889999999999
Q ss_pred CChHHHHHHHHHHhccC--CCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHH
Q 038490 132 GKLDRMKELFQIMEKYV--SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209 (344)
Q Consensus 132 ~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 209 (344)
++.++|.+.++++.... +.+...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999987654 44666777888999999999999999987 35777888899999999999999999
Q ss_pred HHHHHHhcCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHH
Q 038490 210 KEDIMRVYNVKPDGQVF---ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKE 286 (344)
Q Consensus 210 ~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 286 (344)
++++.+.. |+.... ...+..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|...|++..+
T Consensus 153 l~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 153 LKKMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99988763 443211 2233444556899999999999998854 4899999999999999999999999999998
Q ss_pred cCCCCChhhHHHHHHHHhccCCHHH-HHHHHHHHhhC
Q 038490 287 RGCKPNSVTYNALISGFCKEEDFEA-AFTILDEMGDK 322 (344)
Q Consensus 287 ~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 322 (344)
..+. +..++..++..+...|+.++ +.++++++.+.
T Consensus 229 ~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 229 KDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 7543 78889999999999999876 67899999874
No 25
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=168.33 Aligned_cols=154 Identities=11% Similarity=0.060 Sum_probs=125.5
Q ss_pred CcCHhhHHHHHHHHHhhchHHHHHHHHHHHHH--hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 038490 184 QPTLVTFGTLIYGLCLELRVDEALKLKEDIMR--VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261 (344)
Q Consensus 184 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 261 (344)
..-..||+++|++||+.|++++|..+|.+|.+ ..|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33567899999999999999999999988643 3478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCc-CcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC------hhhHHHH
Q 038490 262 SSLISALFKAGRK-NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKAN------PISYNVI 334 (344)
Q Consensus 262 ~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~l 334 (344)
+++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. .+++..+++ ..++.|+ ..|...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 9999999999985 68899999999999999999999998665553 444444444 3455554 4455555
Q ss_pred HHHHhhcC
Q 038490 335 LGGLCKDG 342 (344)
Q Consensus 335 l~~~~~~g 342 (344)
.+.|.+.|
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 55555544
No 26
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=166.80 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=118.3
Q ss_pred cccHHHHHHHHHhhCChhHHHHHHHHHhh---CCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038490 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVK---RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228 (344)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 228 (344)
..+|+++|++|++.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|. ..|+.||..||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~-~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK-DAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCcHHHHHH
Confidence 45799999999999999999999988764 4789999999999999999999999999999965 4599999999999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCC------hhhHHHHHH
Q 038490 229 LIKGLCAVGEL-SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN------SVTYNALIS 301 (344)
Q Consensus 229 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~ 301 (344)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. .+++..+++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999984 78899999999999999999999988766554 333444443 2244443 334444555
Q ss_pred HHhcc
Q 038490 302 GFCKE 306 (344)
Q Consensus 302 ~~~~~ 306 (344)
.|.+.
T Consensus 281 l~s~d 285 (1134)
T 3spa_A 281 VYAKD 285 (1134)
T ss_dssp HHCCC
T ss_pred HHccC
Confidence 55544
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=6.1e-19 Score=145.68 Aligned_cols=282 Identities=11% Similarity=0.055 Sum_probs=123.0
Q ss_pred hhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHH
Q 038490 8 LACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFC 87 (344)
Q Consensus 8 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (344)
+-.++.+.|+.++|.++++++. +..+|..++.++.+.|++++|++.|.+. +|...|.
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~~----------------~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~ 65 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERCN----------------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYM 65 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhCC----------------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHH
Confidence 4445667889999999999991 3358999999999999999999999652 5677899
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCC
Q 038490 88 NVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRR 167 (344)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (344)
.++..+...|++++|++.++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.
T Consensus 66 ~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~ 137 (449)
T 1b89_A 66 EVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKM 137 (449)
T ss_dssp ---------------------------------------------CHHHHTTTTT------CC----------------C
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCC
Confidence 9999999999999999988777764 4557889999999999999999988774 2677799999999999999
Q ss_pred hhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 038490 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKE 247 (344)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 247 (344)
+++|...|..+ ..|..+..++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|.....
T Consensus 138 yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 138 YDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp TTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred HHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999977 37999999999999999999999885 378999999999999999999965544
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHh-hCCCCC
Q 038490 248 EMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG-DKGCKA 326 (344)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~p 326 (344)
. +..++.-...++..|.+.|++++|..+++...... +-....|+.+..+|++- ++++..+.++... +-+++|
T Consensus 202 ~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 202 H-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp T-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHH
T ss_pred H-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcH
Confidence 3 23355556679999999999999999999988664 23556777776666654 3333333333222 122333
Q ss_pred ------ChhhHHHHHHHHhhcCC
Q 038490 327 ------NPISYNVILGGLCKDGK 343 (344)
Q Consensus 327 ------~~~~~~~ll~~~~~~g~ 343 (344)
+...|.-+.-.|.+.|+
T Consensus 275 ~~~~~~~~~~w~e~~~ly~~~~e 297 (449)
T 1b89_A 275 VLRAAEQAHLWAELVFLYDKYEE 297 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhch
Confidence 45566666666665554
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=3.9e-17 Score=129.35 Aligned_cols=229 Identities=16% Similarity=0.034 Sum_probs=121.2
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--CCCHHHHHHH
Q 038490 47 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNV--QMTVKFFNTL 124 (344)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l 124 (344)
...|..+...+...|++++|...|++..+.. .+...+..+..++...|++++|.+.++...+... .++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----- 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK----- 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-----
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-----
Confidence 4455555555556666666666665555542 4445555555555555555555555555554320 00100
Q ss_pred HHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHH
Q 038490 125 LNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204 (344)
Q Consensus 125 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (344)
....++..+...+...|++++|...|++..... |+. ..+...|+++
T Consensus 77 -------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~ 122 (258)
T 3uq3_A 77 -------------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAE 122 (258)
T ss_dssp -------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHH
Confidence 002344444444444555555555554444431 221 2344455556
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHH
Q 038490 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284 (344)
Q Consensus 205 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 284 (344)
+|...++.+.... +.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...+++.
T Consensus 123 ~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 123 KELKKAEAEAYVN--PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHHCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6666665544321 223445555556666666666666666666654433 5556666666666666666666666666
Q ss_pred HHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 038490 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 285 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
.+.... +...+..+...+...|++++|...+++..+
T Consensus 200 l~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 200 IEKDPN-FVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555322 455566666666666666666666666654
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.80 E-value=1.5e-17 Score=128.31 Aligned_cols=196 Identities=11% Similarity=-0.049 Sum_probs=98.8
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (344)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+.. |.+...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 55566666666666777777777766666532 3445566666666666677777776666666654 44555666666
Q ss_pred HHHHhc-----------CChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHH
Q 038490 126 NPKLTC-----------GKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLI 194 (344)
Q Consensus 126 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 194 (344)
.++... |++++|...+++..+..|.+...+..+..++...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 666655 555555555555444444444444444444555555555555555444443 2344444444
Q ss_pred HHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 038490 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEE 248 (344)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 248 (344)
.++...|++++|+..++++++.. +.+...+..+...+...|++++|...+++
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44444444444444444444331 22334444444444444444444444443
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=5.3e-17 Score=128.57 Aligned_cols=196 Identities=11% Similarity=0.046 Sum_probs=128.0
Q ss_pred cchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCC-CCCc----hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHH
Q 038490 45 YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-IVPK----EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK 119 (344)
Q Consensus 45 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 119 (344)
.+..+|..+..++...|++++|.+.+++..+... ..++ ..++..+...+...|++++|...|++..+.. |+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~- 112 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA- 112 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-
Confidence 5678899999999999999999999999876420 1112 4778888889999999999999999988753 443
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHh
Q 038490 120 FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL 199 (344)
Q Consensus 120 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 199 (344)
..+...|++++|...++.+....+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 113 ------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 185 (258)
T 3uq3_A 113 ------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAK 185 (258)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 234455666677777766665544445556666666666666666666666665542 2244555555555566
Q ss_pred hchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038490 200 ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252 (344)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (344)
.|++++|...++++++.. +.+...+..+..++.+.|++++|...+++..+.
T Consensus 186 ~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 186 LMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 666666666666555432 333455555555555566666666555555543
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.80 E-value=2e-17 Score=127.49 Aligned_cols=210 Identities=16% Similarity=0.008 Sum_probs=117.5
Q ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHH
Q 038490 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIH 160 (344)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 160 (344)
++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++.....|.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 444555566666666666666666666666554 4455666666666666666666666666666555555555555555
Q ss_pred HHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 038490 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240 (344)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 240 (344)
++...+.. . .. .....|++++|+..+++.++.. +.+...+..+..++...|+++
T Consensus 82 ~~~~~~~~------------~---~~---------~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 82 AYVALYRQ------------A---ED---------RERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHHT------------C---SS---------HHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhh------------h---hh---------hcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChH
Confidence 55554100 0 00 0012267777777776666542 334566666666677777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHh
Q 038490 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320 (344)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 320 (344)
+|+..|++..+.. .+...+..+..++...|++++|+..|++..+..+. +...+..+...+...|++++|...+++..
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777777776665 36666667777777777777777777776665332 55566666667777777777777666554
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=1.6e-18 Score=143.17 Aligned_cols=266 Identities=11% Similarity=0.080 Sum_probs=137.2
Q ss_pred CCCchhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCC
Q 038490 1 KPTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV 80 (344)
Q Consensus 1 ~p~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 80 (344)
+|...+.++..+.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++...+. .
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika----------------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~---~ 91 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA----------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---A 91 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC----------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---C
Confidence 3667789999999999999999999664 16778999999999999999999987776663 4
Q ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHH
Q 038490 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIH 160 (344)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 160 (344)
+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|..++.
T Consensus 92 ~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~ 156 (449)
T 1b89_A 92 RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLAS 156 (449)
T ss_dssp -----------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------TCHHHHHH
T ss_pred ccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHH
Confidence 557888999999999999999998885 467779999999999999999999999977 48999999
Q ss_pred HHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 038490 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240 (344)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 240 (344)
++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|.++
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHCCCHH
Confidence 999999999999999998 2789999999999999999999555433 2334444567899999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCcCcHHHHHHHHHHcCCCC------ChhhHHHHHHHHhccCCHHHH
Q 038490 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKA--GRKNEFPAILKEMKERGCKP------NSVTYNALISGFCKEEDFEAA 312 (344)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~~~~~~a 312 (344)
+|..+++...... +-...+|+-|.-.|++- ++..+.++.|.. +.+++| +...|..+...|.+.++++.|
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 9999999999876 45788899888888775 233334444331 112222 567799999999999999988
Q ss_pred HHH
Q 038490 313 FTI 315 (344)
Q Consensus 313 ~~~ 315 (344)
...
T Consensus 302 ~~t 304 (449)
T 1b89_A 302 IIT 304 (449)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
No 33
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=1.8e-15 Score=131.42 Aligned_cols=269 Identities=10% Similarity=-0.036 Sum_probs=137.8
Q ss_pred hhhHHHHHHHHHh----cCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHh----cccHHHHHHHHHHHHhcCCCCCH
Q 038490 47 LLHYDLIITKLGR----AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR----ARLLERALQMFDEMSSFNVQMTV 118 (344)
Q Consensus 47 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 118 (344)
..++..+...|.. .+++++|...|++....+ +...+..+...|.. .++.++|.+.|++..+.| +.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~ 183 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NV 183 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 3344444444444 444444444444444321 23334444444443 444555555555444432 33
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHhccCCCCcccHHHHHHHHHh----hCChhHHHHHHHHHhhCCCCcCHhhH
Q 038490 119 KFFNTLLNPKLT----CGKLDRMKELFQIMEKYVSPDACSYNILIHGCVV----SRRLEDAWKVFDEMVKRRLQPTLVTF 190 (344)
Q Consensus 119 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 190 (344)
..+..+...|.. .++.++|...|++..+. .+..++..+...|.. .+++++|..+|++..+.| +...+
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 444444444444 45555555555554433 233344444444443 455555555555555443 22333
Q ss_pred HHHHHHHHh----hchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHH
Q 038490 191 GTLIYGLCL----ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV-----GELSLALGVKEEMVRDKIEMDAGIY 261 (344)
Q Consensus 191 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~ 261 (344)
..+...+.. .++.++|+..|++..+. .+...+..+...|... +++++|...+++..+.+ +...+
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQ----GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 344444444 55666666666655432 2344455555555554 56666666666666553 34455
Q ss_pred HHHHHHHHHcC---CcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 038490 262 SSLISALFKAG---RKNEFPAILKEMKERGCKPNSVTYNALISGFCK----EEDFEAAFTILDEMGDKGCKANPISYNVI 334 (344)
Q Consensus 262 ~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 334 (344)
..+...|...| +.++|...|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+..|
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L 405 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 55555555544 5566666666666653 45566666666666 667777777777776654 34455555
Q ss_pred HHHHhh
Q 038490 335 LGGLCK 340 (344)
Q Consensus 335 l~~~~~ 340 (344)
-..|.+
T Consensus 406 g~~y~~ 411 (490)
T 2xm6_A 406 GEIYYY 411 (490)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 555543
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.78 E-value=4e-17 Score=130.46 Aligned_cols=247 Identities=10% Similarity=-0.071 Sum_probs=161.7
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCC--CHHHHHHH
Q 038490 47 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQM--TVKFFNTL 124 (344)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 124 (344)
...+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..++...+.+-.+ ....|..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 3445566677777777777777777777642 3344567777777777777777777777777632111 13346777
Q ss_pred HHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHH
Q 038490 125 LNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204 (344)
Q Consensus 125 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (344)
..++...|++++|...+++.....+.+..++..+...|...|++++|...|++..+.. +.+...+..+...+...++++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777666666777777777777888888888777776652 224455555552344455788
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHHcCCc
Q 038490 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE---LSLALGVKEEMVRDK-IEMD------AGIYSSLISALFKAGRK 274 (344)
Q Consensus 205 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~ 274 (344)
+|...++++++.. +.+...+..+..++...|+ +++|...+++..+.. ..|+ ..+|..+...|...|++
T Consensus 160 ~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 160 KADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 8888887776653 3345666667777777776 677777777766532 1122 24666777777888888
Q ss_pred CcHHHHHHHHHHcCCCCChhhHHHH
Q 038490 275 NEFPAILKEMKERGCKPNSVTYNAL 299 (344)
Q Consensus 275 ~~a~~~~~~~~~~~~~p~~~~~~~l 299 (344)
++|...+++..+..+. +......+
T Consensus 238 ~~A~~~~~~al~~~p~-~~~a~~~l 261 (272)
T 3u4t_A 238 VKADAAWKNILALDPT-NKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc-HHHHHHHh
Confidence 8888888887776422 44444433
No 35
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.78 E-value=1.8e-17 Score=132.68 Aligned_cols=249 Identities=10% Similarity=-0.027 Sum_probs=196.3
Q ss_pred HhcCCchHHHHHHHHhhhcCCCC--CchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 038490 58 GRAKMFDEMQQILHQLKHDTRIV--PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLD 135 (344)
Q Consensus 58 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 135 (344)
...|++++|+..++++.+..... .+..++..+...+...|++++|...|+++.+.+ +.+..++..+..++...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 34578999999999998752111 245778889999999999999999999999886 667899999999999999999
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 038490 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215 (344)
Q Consensus 136 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 215 (344)
+|...++++....+.+..++..+..+|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+.+...
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999999999888878899999999999999999999999999876 34444444455566778999999999988777
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCC
Q 038490 216 VYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM---DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292 (344)
Q Consensus 216 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 292 (344)
.. +++...+ .++..+...++.++|...++......... +...+..+...|...|++++|...|++..... |+
T Consensus 173 ~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~ 247 (275)
T 1xnf_A 173 KS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH 247 (275)
T ss_dssp HS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT
T ss_pred cC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch
Confidence 53 3343334 36677778888899999999887653321 25778889999999999999999999998863 32
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHH
Q 038490 293 SVTYNALISGFCKEEDFEAAFTIL 316 (344)
Q Consensus 293 ~~~~~~l~~~~~~~~~~~~a~~~~ 316 (344)
. +.....++...|++++|++.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 333455677788888887765
No 36
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=3.1e-15 Score=129.90 Aligned_cols=298 Identities=10% Similarity=-0.037 Sum_probs=240.9
Q ss_pred hhhhhhhhcc----cCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHh----cCCchHHHHHHHHhhhc
Q 038490 5 SIRLACLPRL----QKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGR----AKMFDEMQQILHQLKHD 76 (344)
Q Consensus 5 ~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 76 (344)
...++..+.. .+++++|+..|+.....+ +..++..+...|.. .+++++|.++|++..+.
T Consensus 42 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 108 (490)
T 2xm6_A 42 QLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-------------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK 108 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 4456666666 889999999999874433 67788889999998 89999999999998775
Q ss_pred CCCCCchhHHHHHHHHHHh----cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhccC
Q 038490 77 TRIVPKEIIFCNVIGFYGR----ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT----CGKLDRMKELFQIMEKYV 148 (344)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 148 (344)
.+...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|...|++..+.
T Consensus 109 ----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~- 180 (490)
T 2xm6_A 109 ----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ- 180 (490)
T ss_dssp ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred ----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-
Confidence 256677778888887 789999999999998865 56677888888887 78999999999998775
Q ss_pred CCCcccHHHHHHHHHh----hCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHh----hchHHHHHHHHHHHHHhcCCC
Q 038490 149 SPDACSYNILIHGCVV----SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL----ELRVDEALKLKEDIMRVYNVK 220 (344)
Q Consensus 149 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 220 (344)
.+...+..+...|.. .++.++|..+|++..+.| +...+..+...+.. .+++++|...|++..+.
T Consensus 181 -~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---- 252 (490)
T 2xm6_A 181 -GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ---- 252 (490)
T ss_dssp -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----
T ss_pred -CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----
Confidence 467788888888887 899999999999998875 45566677777775 78999999999997653
Q ss_pred CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCcCcHHHHHHHHHHcCCCC
Q 038490 221 PDGQVFASLIKGLCA----VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA-----GRKNEFPAILKEMKERGCKP 291 (344)
Q Consensus 221 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~p 291 (344)
.+...+..+...+.. .+++++|...|++..+.+ +...+..+...|... +++++|...|++..+.|
T Consensus 253 ~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--- 326 (490)
T 2xm6_A 253 GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--- 326 (490)
T ss_dssp TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---
Confidence 355677777777777 899999999999998764 567778888888887 89999999999998875
Q ss_pred ChhhHHHHHHHHhccC---CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhh
Q 038490 292 NSVTYNALISGFCKEE---DFEAAFTILDEMGDKGCKANPISYNVILGGLCK 340 (344)
Q Consensus 292 ~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 340 (344)
+...+..+...|...| +.++|.++|++..+.| +...+..|-..|..
T Consensus 327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 375 (490)
T 2xm6_A 327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQ 375 (490)
T ss_dssp CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 4567777777777756 7899999999998874 56677777666655
No 37
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.77 E-value=7.9e-17 Score=126.45 Aligned_cols=202 Identities=12% Similarity=0.043 Sum_probs=112.4
Q ss_pred cchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038490 45 YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124 (344)
Q Consensus 45 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 124 (344)
.....|..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|...++++.+.. +.+..++..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 97 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA 97 (243)
T ss_dssp ---------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence 35556667777777777777777777777664 24456666777777777777777777777777664 4456666777
Q ss_pred HHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHH
Q 038490 125 LNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204 (344)
Q Consensus 125 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (344)
...+...|++++|...++++.+..+.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 7777777777777777777666655555666666666666666666666666665542 224445555555555566666
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038490 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252 (344)
Q Consensus 205 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (344)
+|...++++++.. +.+..++..+..++.+.|++++|...++++.+.
T Consensus 177 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 6666665555432 233445555555555555555555555555554
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.77 E-value=5.2e-16 Score=123.98 Aligned_cols=247 Identities=11% Similarity=-0.020 Sum_probs=197.6
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcc----cHHHH
Q 038490 83 EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC----SYNIL 158 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l 158 (344)
...+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..... ++.. +|..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CchhHHHHHHHHH
Confidence 3445667788899999999999999999876 5566689999999999999999999999998843 3333 38899
Q ss_pred HHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038490 159 IHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238 (344)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 238 (344)
...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++.++. .+.+...+..+...+...++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999998864 336678889999999999999999999987654 24467777777734445569
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---cCcHHHHHHHHHHcC-CCCC------hhhHHHHHHHHhccCC
Q 038490 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR---KNEFPAILKEMKERG-CKPN------SVTYNALISGFCKEED 308 (344)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~~~ 308 (344)
+++|...++++.+..+. +...+..+...+...|+ +++|...+++..+.. -.|+ ...|..+...|...|+
T Consensus 158 ~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 99999999999987644 67888889999999998 888999999887652 1233 2577888899999999
Q ss_pred HHHHHHHHHHHhhCCCCC-ChhhHHHHHHH
Q 038490 309 FEAAFTILDEMGDKGCKA-NPISYNVILGG 337 (344)
Q Consensus 309 ~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~ 337 (344)
+++|...+++..+. .| +...+..+-..
T Consensus 237 ~~~A~~~~~~al~~--~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 237 KVKADAAWKNILAL--DPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHC--
T ss_pred HHHHHHHHHHHHhc--CccHHHHHHHhhhh
Confidence 99999999999985 35 44444444333
No 39
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.77 E-value=2.6e-16 Score=131.06 Aligned_cols=250 Identities=7% Similarity=0.002 Sum_probs=200.0
Q ss_pred CcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhccc-HHHHHHHHHHHHhcCCCCCHHHHH
Q 038490 44 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL-LERALQMFDEMSSFNVQMTVKFFN 122 (344)
Q Consensus 44 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 122 (344)
+.+..+|..+..++...|++++|++.++++.... +-+...|..+..++...|+ +++|+..|+++++.+ +-+..+|.
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~ 170 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWH 170 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHH
Confidence 3456778889999999999999999999998853 4457888889999999996 999999999999887 66888999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHh-hc
Q 038490 123 TLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL-EL 201 (344)
Q Consensus 123 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 201 (344)
.+..++...|++++|+..|+++....+.+..+|..+..++.+.|++++|+..++++.+.... +...|+.+..++.. .|
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988889999999999999999999999999999887433 67788888888888 56
Q ss_pred hHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--
Q 038490 202 RVDEA-----LKLKEDIMRVYNVKPDGQVFASLIKGLCAVG--ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAG-- 272 (344)
Q Consensus 202 ~~~~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 272 (344)
..++| +..+++.++.. +.+...|..+...+.+.| ++++|.+.+.++ +.. +.+...+..+...|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcc
Confidence 54666 47788877653 446778888888888877 688888888887 443 336778888888888864
Q ss_pred -------CcCcHHHHHHHH-HHcCCCCC-hhhHHHHHHHH
Q 038490 273 -------RKNEFPAILKEM-KERGCKPN-SVTYNALISGF 303 (344)
Q Consensus 273 -------~~~~a~~~~~~~-~~~~~~p~-~~~~~~l~~~~ 303 (344)
..++|+.+++++ .+. .|. ...|..+...+
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSL 363 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 247888888888 554 343 34455444444
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.76 E-value=7.1e-16 Score=121.77 Aligned_cols=198 Identities=14% Similarity=-0.034 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhh
Q 038490 86 FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165 (344)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (344)
+..+...+...|++++|.+.|+++.+.. +.+..++..+..++...|++++|...++++....+.+...+..+...|...
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH
Confidence 3333444444444444444444444332 233344444444444444444444444444443333344444444444444
Q ss_pred CChhHHHHHHHHHhhCCCCc-CHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 038490 166 RRLEDAWKVFDEMVKRRLQP-TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244 (344)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 244 (344)
|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++++.. +.+...+..+...+...|++++|..
T Consensus 119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555554444411122 22334444444445555555555555444332 2234444444555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 245 VKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
.++++.+... .+...+..+...+...|+.++|.+.++++.+.
T Consensus 197 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 197 YYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5555444332 23444444444445555555555555554443
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.76 E-value=8.9e-16 Score=121.20 Aligned_cols=202 Identities=6% Similarity=-0.091 Sum_probs=177.9
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038490 47 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126 (344)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 126 (344)
...|..+...+...|++++|.+.|+++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence 6788999999999999999999999998752 4567888999999999999999999999999876 567889999999
Q ss_pred HHHhcCChHHHHHHHHHHhc--cCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHH
Q 038490 127 PKLTCGKLDRMKELFQIMEK--YVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204 (344)
Q Consensus 127 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (344)
.+...|++++|...++++.. ..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999988 444566788889999999999999999999998764 335778888999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 038490 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254 (344)
Q Consensus 205 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 254 (344)
+|...++++++. .+.+...+..+...+...|++++|.+.++++.+..+
T Consensus 193 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 193 PARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 999999998764 356678888999999999999999999999988743
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.76 E-value=1.5e-15 Score=117.56 Aligned_cols=98 Identities=8% Similarity=0.006 Sum_probs=44.1
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (344)
+..+|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 34444444445555555555555555444431 2233444444444444444444444444444433 23334444444
Q ss_pred HHHHhc-CChHHHHHHHHHHhc
Q 038490 126 NPKLTC-GKLDRMKELFQIMEK 146 (344)
Q Consensus 126 ~~~~~~-~~~~~a~~~~~~~~~ 146 (344)
.++... |++++|...++++..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHc
Confidence 444444 444444444444433
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.76 E-value=1.9e-15 Score=116.90 Aligned_cols=214 Identities=11% Similarity=-0.069 Sum_probs=183.8
Q ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHH
Q 038490 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIH 160 (344)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 160 (344)
.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+..++...|++++|...++++....+.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 346778889999999999999999999999876 6678899999999999999999999999998887778889999999
Q ss_pred HHHhh-CChhHHHHHHHHHhhCCCCc-CHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038490 161 GCVVS-RRLEDAWKVFDEMVKRRLQP-TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE 238 (344)
Q Consensus 161 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 238 (344)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++++.. +.+...+..+..++.+.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCC
Confidence 99999 99999999999998832333 35677888889999999999999999988753 4568889999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHH
Q 038490 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299 (344)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 299 (344)
+++|...++++.+..+..+...+..+...+...|+.+++..+++.+.... |+......+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~ 221 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF--PYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 99999999999987652478888888889999999999999999998763 454444433
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.76 E-value=2e-16 Score=124.11 Aligned_cols=202 Identities=14% Similarity=0.044 Sum_probs=137.7
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHH
Q 038490 82 KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161 (344)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 161 (344)
....+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++....+.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 44556677777888888888888888888765 55677888888888888888888888888877766677778888888
Q ss_pred HHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 038490 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241 (344)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 241 (344)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++++.. +.+...+..+...+.+.|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888877653 2356667777777778888888888888776643 3456677777777777888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcC
Q 038490 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288 (344)
Q Consensus 242 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 288 (344)
|...++++.+.... +..++..+...+...|++++|...++++.+..
T Consensus 178 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 88888777766433 56677777777777777777777777777653
No 45
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.1e-15 Score=132.10 Aligned_cols=312 Identities=11% Similarity=-0.019 Sum_probs=221.9
Q ss_pred chhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcC----C-
Q 038490 4 SSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT----R- 78 (344)
Q Consensus 4 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~- 78 (344)
.+..++.++...|++++|++.|++...-... .......+....+|+.+..+|...|++++|...+++..+.. +
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~--~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQ--EHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--HSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--cCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 3567889999999999999999875321000 00011123356789999999999999999999998875421 0
Q ss_pred CCC-chhHHHHHHHHHHh--cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HhcCChHHHHHHHHHHhccCCCCc
Q 038490 79 IVP-KEIIFCNVIGFYGR--ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK---LTCGKLDRMKELFQIMEKYVSPDA 152 (344)
Q Consensus 79 ~~~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~ 152 (344)
..+ ...++.....++.. .+++++|+..|++..+.. |-+...+..+..++ ...++.++|+..+++..+..+.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 111 24556555544444 457999999999999876 55666666665553 456778889999999888777777
Q ss_pred ccHHHHHHHHHh----hCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038490 153 CSYNILIHGCVV----SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFAS 228 (344)
Q Consensus 153 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 228 (344)
.++..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...++++++.. +.+..++..
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~ 286 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHH
Confidence 777766655544 467889999999988764 3466778889999999999999999999988763 445667776
Q ss_pred HHHHHHhc-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCC
Q 038490 229 LIKGLCAV-------------------GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289 (344)
Q Consensus 229 l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 289 (344)
+..+|... +..+.|...++...+.++. +...+..+...+...|++++|+..|++..+...
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 66555322 2356788888888876544 667788899999999999999999999988754
Q ss_pred CCChh--hHHHHHH-HHhccCCHHHHHHHHHHHhhC
Q 038490 290 KPNSV--TYNALIS-GFCKEEDFEAAFTILDEMGDK 322 (344)
Q Consensus 290 ~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~ 322 (344)
.|... .+..+.. .....|+.++|+..|++..+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 43221 2233332 335779999999999887653
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.75 E-value=1.4e-15 Score=126.62 Aligned_cols=248 Identities=10% Similarity=0.053 Sum_probs=208.5
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhccCCCCcccHHHHHHH
Q 038490 83 EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK-LDRMKELFQIMEKYVSPDACSYNILIHG 161 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 161 (344)
...|..+..++...|++++|++.++++++.. +-+..+|+.+..++...|+ +++|+..|+++....+.+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4567788888999999999999999999987 6778999999999999997 9999999999999988899999999999
Q ss_pred HHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCChH
Q 038490 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA-VGELS 240 (344)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 240 (344)
+...|++++|+..|+++.+.... +...|..+..++...|++++|+..++++++.. +.+...|+.+..++.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999987433 77888889999999999999999999998864 5578899999999998 66657
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccC------
Q 038490 241 LA-----LGVKEEMVRDKIEMDAGIYSSLISALFKAG--RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE------ 307 (344)
Q Consensus 241 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~------ 307 (344)
+| +..+++.+...+. +...|+.+...+...| ++++|++.+.++ +.. +.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 77 5889999887655 7889999999999888 689999999888 432 336677888888888864
Q ss_pred ---CHHHHHHHHHHH-hhCCCCCC-hhhHHHHHHHHh
Q 038490 308 ---DFEAAFTILDEM-GDKGCKAN-PISYNVILGGLC 339 (344)
Q Consensus 308 ---~~~~a~~~~~~~-~~~~~~p~-~~~~~~ll~~~~ 339 (344)
..++|..+++++ .+. .|. ...|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 358999999999 553 453 345665555543
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.74 E-value=4.7e-17 Score=130.21 Aligned_cols=259 Identities=8% Similarity=-0.079 Sum_probs=199.2
Q ss_pred hhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhH
Q 038490 6 IRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEII 85 (344)
Q Consensus 6 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 85 (344)
..++......|++++|+..|+.+....+ ...+.+..+|..+...+...|++++|...|+++.+.. +.+..+
T Consensus 9 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~ 79 (275)
T 1xnf_A 9 EVLAVPLQPTLQQEVILARMEQILASRA-------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEV 79 (275)
T ss_dssp GGSCCCCCCCHHHHHHHHHHHHHHTSSC-------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHH
T ss_pred cceeeccCccchHHHHHHHHHHHHhccc-------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHH
Confidence 3455667788999999999999755421 1123467889999999999999999999999998863 456788
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhh
Q 038490 86 FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165 (344)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (344)
+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++++....+.+. .....+..+...
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~ 157 (275)
T 1xnf_A 80 FNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP-FRSLWLYLAEQK 157 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHh
Confidence 9999999999999999999999999876 56788999999999999999999999999988665443 444455566778
Q ss_pred CChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhcCChHHHH
Q 038490 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN-VK-PDGQVFASLIKGLCAVGELSLAL 243 (344)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~a~ 243 (344)
|++++|...+++..... +++...+ .++..+...++.++|...+...++... .. .+...+..+..++.+.|++++|.
T Consensus 158 ~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 235 (275)
T 1xnf_A 158 LDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSAT 235 (275)
T ss_dssp HCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHH
Confidence 99999999998887763 3344444 466677788888999999988653210 00 12577888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHH
Q 038490 244 GVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281 (344)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 281 (344)
..+++.....+. +.. ....++...|++++|+..+
T Consensus 236 ~~~~~al~~~p~-~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 236 ALFKLAVANNVH-NFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHTTCCT-TCH---HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHhCCch-hHH---HHHHHHHHHHHHHhhHHHH
Confidence 999999987532 322 3355667777777777665
No 48
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.74 E-value=3.6e-16 Score=132.27 Aligned_cols=297 Identities=13% Similarity=0.017 Sum_probs=224.7
Q ss_pred cchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCc----hhHHHHHHHHHHhcccHHHHHHHHHHHHhc----CCCC
Q 038490 45 YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK----EIIFCNVIGFYGRARLLERALQMFDEMSSF----NVQM 116 (344)
Q Consensus 45 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 116 (344)
.....+......+...|++++|...|++..+.. +.+ ..++..+...+...|++++|...+++.... +-.|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 366677888999999999999999999998863 223 356778899999999999999999987643 2112
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC--CC----cccHHHHHHHHHhhCC--------------------hh
Q 038490 117 -TVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PD----ACSYNILIHGCVVSRR--------------------LE 169 (344)
Q Consensus 117 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~--------------------~~ 169 (344)
...++..+...+...|++++|...+++.....+ .+ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 255788888999999999999999988765433 22 4478888899999999 99
Q ss_pred HHHHHHHHHhhC----CCCc-CHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChH
Q 038490 170 DAWKVFDEMVKR----RLQP-TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD----GQVFASLIKGLCAVGELS 240 (344)
Q Consensus 170 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 240 (344)
+|...+++.... +..+ ...++..+...+...|++++|...+++.++...-.++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999886542 2111 2346777888899999999999999998764322233 347888889999999999
Q ss_pred HHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCC-CC----hhhHHHHHHHHhccCCHH
Q 038490 241 LALGVKEEMVRDKIE-MD----AGIYSSLISALFKAGRKNEFPAILKEMKERGCK-PN----SVTYNALISGFCKEEDFE 310 (344)
Q Consensus 241 ~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~ 310 (344)
+|...+++..+.... .+ ..++..+...|...|++++|...+++....... ++ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999998753211 11 567888999999999999999999988654111 11 456778888999999999
Q ss_pred HHHHHHHHHhhC----CCCC-ChhhHHHHHHHHhhcCC
Q 038490 311 AAFTILDEMGDK----GCKA-NPISYNVILGGLCKDGK 343 (344)
Q Consensus 311 ~a~~~~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~ 343 (344)
+|...+++..+. +-.+ ...++..+...+...|+
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 999999987642 2122 24456666666665553
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.74 E-value=2.5e-14 Score=114.32 Aligned_cols=224 Identities=11% Similarity=-0.014 Sum_probs=181.8
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHh----cccHHHHHHHHHHHHhcCCCCCHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR----ARLLERALQMFDEMSSFNVQMTVKFF 121 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 121 (344)
+..++..+...+...|++++|.+.|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 6778888888999999999999999988773 345677778888888 999999999999988865 67788
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHhccCCCCcccHHHHHHHHHh----hCChhHHHHHHHHHhhCCCCcCHhhHHHH
Q 038490 122 NTLLNPKLT----CGKLDRMKELFQIMEKYVSPDACSYNILIHGCVV----SRRLEDAWKVFDEMVKRRLQPTLVTFGTL 193 (344)
Q Consensus 122 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 193 (344)
..+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 888888888 899999999998887753 66778888888888 889999999999888875 45566667
Q ss_pred HHHHHh----hchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038490 194 IYGLCL----ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA----VGELSLALGVKEEMVRDKIEMDAGIYSSLI 265 (344)
Q Consensus 194 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 265 (344)
...+.. .+++++|...+++..+. .+...+..+...|.. .+++++|...+++..+.+ +...+..+.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 777777 78889999988887764 345677778888888 888888988888888764 366777788
Q ss_pred HHHHH----cCCcCcHHHHHHHHHHcC
Q 038490 266 SALFK----AGRKNEFPAILKEMKERG 288 (344)
Q Consensus 266 ~~~~~----~g~~~~a~~~~~~~~~~~ 288 (344)
..|.. .+++++|...|++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 88888 888888888888888775
No 50
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.73 E-value=3.1e-16 Score=133.07 Aligned_cols=276 Identities=13% Similarity=-0.007 Sum_probs=214.4
Q ss_pred cchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch----hHHHHHHHHHHhcccHHHHHHHHHHHHhc----C-CC
Q 038490 45 YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE----IIFCNVIGFYGRARLLERALQMFDEMSSF----N-VQ 115 (344)
Q Consensus 45 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~ 115 (344)
.....+..+...+...|++++|+..|+++.+.. +.+. ..+..+...+...|++++|...+++..+. + .+
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 355566778889999999999999999998863 2232 46788899999999999999999988753 1 12
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhccC------CCCcccHHHHHHHHHhhCC-----------------hhHHH
Q 038490 116 MTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV------SPDACSYNILIHGCVVSRR-----------------LEDAW 172 (344)
Q Consensus 116 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~-----------------~~~a~ 172 (344)
....++..+...|...|++++|...+++..... +....++..+...|...|+ +++|.
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 345678889999999999999999998876542 1334578888999999999 99999
Q ss_pred HHHHHHhhC----CC-CcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHHHH
Q 038490 173 KVFDEMVKR----RL-QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD----GQVFASLIKGLCAVGELSLAL 243 (344)
Q Consensus 173 ~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~ 243 (344)
..+++..+. +. ......+..+...+...|++++|...+++.++...-..+ ..++..+...+...|++++|.
T Consensus 204 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (411)
T 4a1s_A 204 EFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 998886542 11 112346777888899999999999999988764322222 237788899999999999999
Q ss_pred HHHHHHHHCCCC-----CCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCC-----CCChhhHHHHHHHHhccCCHHHHH
Q 038490 244 GVKEEMVRDKIE-----MDAGIYSSLISALFKAGRKNEFPAILKEMKERGC-----KPNSVTYNALISGFCKEEDFEAAF 313 (344)
Q Consensus 244 ~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~~~~~~a~ 313 (344)
..+++....... ....++..+...+...|++++|...+++...... .....++..+...|...|++++|.
T Consensus 284 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 363 (411)
T 4a1s_A 284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERAL 363 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 999988764221 1256788899999999999999999998865411 112346778889999999999999
Q ss_pred HHHHHHhhC
Q 038490 314 TILDEMGDK 322 (344)
Q Consensus 314 ~~~~~~~~~ 322 (344)
..+++..+.
T Consensus 364 ~~~~~al~~ 372 (411)
T 4a1s_A 364 KYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998653
No 51
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.72 E-value=6.9e-16 Score=126.88 Aligned_cols=275 Identities=13% Similarity=0.018 Sum_probs=211.2
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCc----hhHHHHHHHHHHhcccHHHHHHHHHHHHhc----CC-CC
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK----EIIFCNVIGFYGRARLLERALQMFDEMSSF----NV-QM 116 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~ 116 (344)
+...+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|.+.+++..+. +- +.
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH
Confidence 34456677888999999999999999998853 223 356778899999999999999999987643 21 22
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC--CC----cccHHHHHHHHHhhCC--------------------hhH
Q 038490 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PD----ACSYNILIHGCVVSRR--------------------LED 170 (344)
Q Consensus 117 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~--------------------~~~ 170 (344)
...++..+...+...|++++|...+++.....+ .+ ..++..+...+...|+ +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 356788889999999999999999988765433 22 3377888899999999 999
Q ss_pred HHHHHHHHhhC----CCC-cCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHH
Q 038490 171 AWKVFDEMVKR----RLQ-PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD----GQVFASLIKGLCAVGELSL 241 (344)
Q Consensus 171 a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ 241 (344)
|...+++.... +.. .....+..+...+...|++++|...+++.++.....++ ..++..+...+...|++++
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 241 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 241 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 99998886542 111 12346777788889999999999999987754322222 3477888889999999999
Q ss_pred HHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCC----C-CChhhHHHHHHHHhccCCHHH
Q 038490 242 ALGVKEEMVRDKIE-MD----AGIYSSLISALFKAGRKNEFPAILKEMKERGC----K-PNSVTYNALISGFCKEEDFEA 311 (344)
Q Consensus 242 a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~-p~~~~~~~l~~~~~~~~~~~~ 311 (344)
|...+++..+.... .+ ..++..+...+...|++++|...+++...... . ....++..+...+...|++++
T Consensus 242 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (338)
T 3ro2_A 242 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999988753211 11 56778889999999999999999998865411 1 113467788899999999999
Q ss_pred HHHHHHHHhhC
Q 038490 312 AFTILDEMGDK 322 (344)
Q Consensus 312 a~~~~~~~~~~ 322 (344)
|...+++..+.
T Consensus 322 A~~~~~~a~~~ 332 (338)
T 3ro2_A 322 AMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 52
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=1.1e-13 Score=121.47 Aligned_cols=203 Identities=7% Similarity=0.003 Sum_probs=147.0
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHh-------hCChh-------HHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhc
Q 038490 136 RMKELFQIMEKYVSPDACSYNILIHGCVV-------SRRLE-------DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201 (344)
Q Consensus 136 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 201 (344)
.+..+|++.....+.+...|..++..+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 33445555555444556666666666665 68877 89999999886322335777888888888999
Q ss_pred hHHHHHHHHHHHHHhcCCCCC-H-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCcCcHH
Q 038490 202 RVDEALKLKEDIMRVYNVKPD-G-QVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISA-LFKAGRKNEFP 278 (344)
Q Consensus 202 ~~~~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~ 278 (344)
++++|..+|+++++. .|+ . ..|..++..+.+.|++++|..+|++..+.... +...|...+.. +...|+.++|.
T Consensus 336 ~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp CHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHH
Confidence 999999999998864 443 3 57888888888899999999999999886432 33444333222 34689999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCC-CCCC--hhhHHHHHHHHhhcCC
Q 038490 279 AILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKG-CKAN--PISYNVILGGLCKDGK 343 (344)
Q Consensus 279 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~--~~~~~~ll~~~~~~g~ 343 (344)
.+|++..+... -+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+
T Consensus 412 ~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 412 KIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999887642 267888899999999999999999999998763 2232 3367777776666665
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.72 E-value=3.7e-14 Score=113.31 Aligned_cols=224 Identities=11% Similarity=-0.047 Sum_probs=197.0
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhccCCCCcccHHH
Q 038490 82 KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT----CGKLDRMKELFQIMEKYVSPDACSYNI 157 (344)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (344)
+..++..+...+...|++++|.+.|++..+. .+...+..+...+.. .+++++|...|++..+.+ +..++..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHH
Confidence 5677888889999999999999999999983 456788889999999 999999999999998764 7788889
Q ss_pred HHHHHHh----hCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHh----hchHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038490 158 LIHGCVV----SRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCL----ELRVDEALKLKEDIMRVYNVKPDGQVFASL 229 (344)
Q Consensus 158 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 229 (344)
+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..+++..+.. +...+..+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l 152 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTIL 152 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHHHH
Confidence 9999999 999999999999999875 67778888888888 999999999999988742 56778888
Q ss_pred HHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCcCcHHHHHHHHHHcCCCCChhhHHHHHH
Q 038490 230 IKGLCA----VGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK----AGRKNEFPAILKEMKERGCKPNSVTYNALIS 301 (344)
Q Consensus 230 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 301 (344)
...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888888 899999999999999874 56788889999999 999999999999999874 3667788888
Q ss_pred HHhc----cCCHHHHHHHHHHHhhCC
Q 038490 302 GFCK----EEDFEAAFTILDEMGDKG 323 (344)
Q Consensus 302 ~~~~----~~~~~~a~~~~~~~~~~~ 323 (344)
.|.. .+++++|...|++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8988 999999999999999875
No 54
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=1.6e-13 Score=111.71 Aligned_cols=237 Identities=9% Similarity=0.030 Sum_probs=180.0
Q ss_pred chhhHHHHHHHHHhc----CCc----hHHHHHHHHhhhcCCCCCchhHHHHHHHHHHh-------cccH-------HHHH
Q 038490 46 NLLHYDLIITKLGRA----KMF----DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR-------ARLL-------ERAL 103 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~ 103 (344)
+...|...+....+. ++. ++|..+|++.... .+.+...|..++..+.. .|++ ++|.
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence 455677777665443 232 6788899998875 25567778777777653 4765 8999
Q ss_pred HHHHHHHh-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcc-cHHHHHHHHHhhCChhHHHHHHHHHhhC
Q 038490 104 QMFDEMSS-FNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC-SYNILIHGCVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 104 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (344)
.+|++..+ .. +.+...|..++..+...|++++|..+|++..+..+.+.. .|..++..+.+.|++++|..+|++..+.
T Consensus 85 ~~~~rAl~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 85 NIYERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHHTTTT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999988 44 556778999999999999999999999999886655554 7888888899999999999999998876
Q ss_pred CCCcCHhhHHHHHHHHH-hhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--C
Q 038490 182 RLQPTLVTFGTLIYGLC-LELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK-IEM--D 257 (344)
Q Consensus 182 ~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~ 257 (344)
+. .+...|........ ..|+.++|..+|++.++.. +.+...|..++..+.+.|++++|..+|++..... .+| .
T Consensus 164 ~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~ 240 (308)
T 2ond_A 164 AR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 240 (308)
T ss_dssp TT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC
T ss_pred CC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 42 33444443332222 3689999999999888764 4567888888888889999999999999998863 333 5
Q ss_pred HHHHHHHHHHHHHcCCcCcHHHHHHHHHHcC
Q 038490 258 AGIYSSLISALFKAGRKNEFPAILKEMKERG 288 (344)
Q Consensus 258 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 288 (344)
...|..++....+.|+.++|..+++++.+..
T Consensus 241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 241 GEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 6788888888888999999999999888763
No 55
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=1e-13 Score=112.73 Aligned_cols=217 Identities=7% Similarity=0.038 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHhc-cCCCCcccHHHHHHHHHh
Q 038490 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKL-------TCGKL-------DRMKELFQIMEK-YVSPDACSYNILIHGCVV 164 (344)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 164 (344)
++|..+|++..... +.+...|..++..+. ..|++ ++|..+|++... ..+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 78889999998875 678888988888776 35886 899999999998 466677799999999999
Q ss_pred hCChhHHHHHHHHHhhCCCCcC-Hh-hHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCChHH
Q 038490 165 SRRLEDAWKVFDEMVKRRLQPT-LV-TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLC-AVGELSL 241 (344)
Q Consensus 165 ~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 241 (344)
.|++++|..+|+++.+. .|+ .. .|..+...+.+.|++++|..+|+++++.. +.+...|........ ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999985 443 33 78888889999999999999999987643 344455554443322 3799999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcC-CCC--ChhhHHHHHHHHhccCCHHHHHHHHHH
Q 038490 242 ALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG-CKP--NSVTYNALISGFCKEEDFEAAFTILDE 318 (344)
Q Consensus 242 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 318 (344)
|..+|++..+..+. +...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999987544 78899999999999999999999999999863 344 456788889999999999999999999
Q ss_pred HhhC
Q 038490 319 MGDK 322 (344)
Q Consensus 319 ~~~~ 322 (344)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
No 56
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.68 E-value=1e-13 Score=128.01 Aligned_cols=274 Identities=13% Similarity=0.106 Sum_probs=213.4
Q ss_pred hhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhH
Q 038490 6 IRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEII 85 (344)
Q Consensus 6 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 85 (344)
..++.++...|.+++|..+|++... ...+.+.++ ...+++++|.++.++.. +..+
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~---------------~~~A~~VLi---e~i~nldrAiE~Aervn-------~p~v 1107 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV---------------NTSAVQVLI---EHIGNLDRAYEFAERCN-------EPAV 1107 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC---------------HHHHHHHHH---HHHhhHHHHHHHHHhcC-------CHHH
Confidence 4568889999999999999999821 222233332 37789999999988652 3678
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhh
Q 038490 86 FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165 (344)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (344)
|..+..++...|++++|+..|.+. .+...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++.
T Consensus 1108 WsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~-~e~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A 1108 WSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFALAKT 1180 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-ccccccHHHHHHHHhh
Confidence 899999999999999999999663 567788899999999999999999999887655 3333444599999999
Q ss_pred CChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 038490 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGV 245 (344)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 245 (344)
+++++..... + .++...|..+...|...|++++|..+|..+ ..|..+..++.+.|++++|.+.
T Consensus 1181 ~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1181 NRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred cCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHH
Confidence 9888644332 2 345566777899999999999999999884 3789999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC
Q 038490 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325 (344)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 325 (344)
+++.. +..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++...... +
T Consensus 1244 arKA~------n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-r 1311 (1630)
T 1xi4_A 1244 ARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-R 1311 (1630)
T ss_pred HHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-h
Confidence 98772 67889888999999998888877665432 356677788899999999999999998877543 2
Q ss_pred CChhhHHHHHHHHhh
Q 038490 326 ANPISYNVILGGLCK 340 (344)
Q Consensus 326 p~~~~~~~ll~~~~~ 340 (344)
-....|+-|...|++
T Consensus 1312 aH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1312 AHMGMFTELAILYSK 1326 (1630)
T ss_pred hHhHHHHHHHHHHHh
Confidence 244456555555554
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.68 E-value=6.1e-15 Score=127.13 Aligned_cols=217 Identities=10% Similarity=-0.034 Sum_probs=187.7
Q ss_pred ccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHH
Q 038490 97 RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL-DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVF 175 (344)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 175 (344)
+.++++++.++...... +.+...+..+..++...|++ ++|...|++..+..+.+..+|..+..+|.+.|++++|.+.|
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34677778888776654 56788999999999999999 99999999999888888899999999999999999999999
Q ss_pred HHHhhCCCCcCHhhHHHHHHHHHhh---------chHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------CC
Q 038490 176 DEMVKRRLQPTLVTFGTLIYGLCLE---------LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV--------GE 238 (344)
Q Consensus 176 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 238 (344)
++..+.. |+...+..+...+... |++++|+..++++++.. +.+...+..+..++... |+
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 9999874 6678888888899999 99999999999988764 55688899999999988 99
Q ss_pred hHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHH
Q 038490 239 LSLALGVKEEMVRDKIE--MDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTIL 316 (344)
Q Consensus 239 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 316 (344)
+++|...|++..+..+. -+...|..+..+|...|++++|...|++..+.... +...+..+..++...|++++|.+.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999987541 38899999999999999999999999999887543 6677888888999999999998765
Q ss_pred HHH
Q 038490 317 DEM 319 (344)
Q Consensus 317 ~~~ 319 (344)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.67 E-value=5.6e-16 Score=131.06 Aligned_cols=295 Identities=11% Similarity=-0.037 Sum_probs=219.2
Q ss_pred hhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcc--hhhHHHHHHHHHhcCCchHHHHHHHHhhhc---CCCC
Q 038490 6 IRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYN--LLHYDLIITKLGRAKMFDEMQQILHQLKHD---TRIV 80 (344)
Q Consensus 6 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~ 80 (344)
...+..+...|++++|+..|+++....+ ..+. ..+|..+...+...|++++|...+++.... .+..
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGT---------EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC---------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCc---------ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 4678889999999999999999754321 1111 467889999999999999999999986543 1111
Q ss_pred C-chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCC--------------------h
Q 038490 81 P-KEIIFCNVIGFYGRARLLERALQMFDEMSSFNV-QMT----VKFFNTLLNPKLTCGK--------------------L 134 (344)
Q Consensus 81 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~ 134 (344)
| ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 2 245677888999999999999999998875320 011 4478888899999999 9
Q ss_pred HHHHHHHHHHhccCC------CCcccHHHHHHHHHhhCChhHHHHHHHHHhhC----CCC-cCHhhHHHHHHHHHhhchH
Q 038490 135 DRMKELFQIMEKYVS------PDACSYNILIHGCVVSRRLEDAWKVFDEMVKR----RLQ-PTLVTFGTLIYGLCLELRV 203 (344)
Q Consensus 135 ~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~ 203 (344)
++|...+++...... ....++..+...|...|++++|...+++..+. +.. ....++..+...+...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 999999887654311 22456788889999999999999999998653 111 1123677888899999999
Q ss_pred HHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCc
Q 038490 204 DEALKLKEDIMRVYNVKPD----GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM-----DAGIYSSLISALFKAGRK 274 (344)
Q Consensus 204 ~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~ 274 (344)
++|...+++.++...-..+ ..++..+...+...|++++|...+++..+..... ...++..+...|...|++
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 9999999987754322222 5578888999999999999999999987642111 156788899999999999
Q ss_pred CcHHHHHHHHHHc----CCCC-ChhhHHHHHHHHhccCCH
Q 038490 275 NEFPAILKEMKER----GCKP-NSVTYNALISGFCKEEDF 309 (344)
Q Consensus 275 ~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~ 309 (344)
++|...+++..+. +..+ ...++..+...+...|+.
T Consensus 324 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 9999999987654 2111 234566667777766654
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.67 E-value=6.2e-16 Score=131.19 Aligned_cols=273 Identities=11% Similarity=-0.046 Sum_probs=209.0
Q ss_pred hhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcc--hhhHHHHHHHHHhcCCchHHHHHHHHhhhcC---C-C
Q 038490 6 IRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYN--LLHYDLIITKLGRAKMFDEMQQILHQLKHDT---R-I 79 (344)
Q Consensus 6 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-~ 79 (344)
..++..+...|++++|+..|+++....+ ..+. ..+|..+...+...|++++|...+++..... + .
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~---------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 122 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGT---------EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR 122 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC---------SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcc---------cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc
Confidence 4567788899999999999999754321 1111 2578899999999999999999999876531 1 1
Q ss_pred CCchhHHHHHHHHHHhcccHHHHHHHHHHHHhc----C-CCCCHHHHHHHHHHHHhcCC-----------------hHHH
Q 038490 80 VPKEIIFCNVIGFYGRARLLERALQMFDEMSSF----N-VQMTVKFFNTLLNPKLTCGK-----------------LDRM 137 (344)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a 137 (344)
+....++..+...|...|++++|...+++..+. + .+....++..+...+...|+ +++|
T Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 223467788899999999999999999988754 1 12234578888999999999 9999
Q ss_pred HHHHHHHhccCC------CCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCC-cC----HhhHHHHHHHHHhhchHHHH
Q 038490 138 KELFQIMEKYVS------PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ-PT----LVTFGTLIYGLCLELRVDEA 206 (344)
Q Consensus 138 ~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a 206 (344)
...+++...... ....++..+...|...|++++|...+++..+.... .+ ...+..+...+...|++++|
T Consensus 203 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (411)
T 4a1s_A 203 VEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHH
Confidence 999887654321 22347788889999999999999999998754111 11 23677788899999999999
Q ss_pred HHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHcCCcCcH
Q 038490 207 LKLKEDIMRVYNVKPD----GQVFASLIKGLCAVGELSLALGVKEEMVRDKI-----EMDAGIYSSLISALFKAGRKNEF 277 (344)
Q Consensus 207 ~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a 277 (344)
...+++.++...-..+ ..++..+...+...|++++|...+++...... .....++..+...|...|++++|
T Consensus 283 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 362 (411)
T 4a1s_A 283 AEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA 362 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHH
Confidence 9999987764321222 46788889999999999999999999876421 11245788899999999999999
Q ss_pred HHHHHHHHHc
Q 038490 278 PAILKEMKER 287 (344)
Q Consensus 278 ~~~~~~~~~~ 287 (344)
...+++..+.
T Consensus 363 ~~~~~~al~~ 372 (411)
T 4a1s_A 363 LKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998775
No 60
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=3.6e-13 Score=116.30 Aligned_cols=276 Identities=12% Similarity=-0.018 Sum_probs=206.1
Q ss_pred cchhhHHHHHHHHHhcCCchHHHHHHHHhhhc----CC---CCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcC----
Q 038490 45 YNLLHYDLIITKLGRAKMFDEMQQILHQLKHD----TR---IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFN---- 113 (344)
Q Consensus 45 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 113 (344)
.....|+.+...+...|++++|++.|++..+. .+ -+....+|..+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 35678999999999999999999999886532 01 12235678999999999999999999999886421
Q ss_pred ---CCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHhccCCCCcccHHHHHHHH---HhhCChhHHHHHHHHHhhCCCCc
Q 038490 114 ---VQMTVKFFNTLLNPKLTC--GKLDRMKELFQIMEKYVSPDACSYNILIHGC---VVSRRLEDAWKVFDEMVKRRLQP 185 (344)
Q Consensus 114 ---~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~ 185 (344)
-.....++..+..++... +++++|...|++.....|.+...+..+..++ ...++.++|++.+++..+.+ +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 112355666666555554 5799999999999988877777776666554 45577889999999888763 22
Q ss_pred CHhhHHHHHHHHHh----hchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 038490 186 TLVTFGTLIYGLCL----ELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIY 261 (344)
Q Consensus 186 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 261 (344)
+...+..+...+.. .+++++|.+.+++..... +.+...+..+...+...|++++|...+++..+..+. +..++
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 45555555444443 467889999999987753 556788999999999999999999999999987655 67777
Q ss_pred HHHHHHHHHc-------------------CCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 038490 262 SSLISALFKA-------------------GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322 (344)
Q Consensus 262 ~~l~~~~~~~-------------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 322 (344)
..+...|... +..++|...+++..+.... +...+..+...+...|++++|...|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 7777666432 2356777888888776533 6678888999999999999999999999886
Q ss_pred CCC
Q 038490 323 GCK 325 (344)
Q Consensus 323 ~~~ 325 (344)
...
T Consensus 364 ~~~ 366 (472)
T 4g1t_A 364 ELT 366 (472)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 61
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=1.5e-13 Score=120.49 Aligned_cols=317 Identities=11% Similarity=0.028 Sum_probs=202.9
Q ss_pred hhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHH
Q 038490 7 RLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF 86 (344)
Q Consensus 7 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 86 (344)
.++. +.+.|++++|..+|+++.. .+|.+...|...+..+.+.|++++|..+|++.... .|+...|
T Consensus 18 ~l~~-~~~~~~~~~a~~~~e~al~-----------~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw 82 (530)
T 2ooe_A 18 ILIR-EAQNQPIDKARKTYERLVA-----------QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLW 82 (530)
T ss_dssp HHHH-HHHSSCHHHHHHHHHHHHT-----------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHH
T ss_pred HHHH-HHHhCCHHHHHHHHHHHHH-----------HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHH
Confidence 4455 3568999999999999843 34558889999999999999999999999999874 3677666
Q ss_pred HHHHHHH-HhcccHHHHHH----HHHHHHhc-CCC-CCHHHHHHHHHHHHh---------cCChHHHHHHHHHHhccCCC
Q 038490 87 CNVIGFY-GRARLLERALQ----MFDEMSSF-NVQ-MTVKFFNTLLNPKLT---------CGKLDRMKELFQIMEKYVSP 150 (344)
Q Consensus 87 ~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~ 150 (344)
...+... ...|+.+.|.+ +|+..... |.. .+...|...+..... .|+++.|..+|++.......
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~ 162 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMI 162 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCT
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhh
Confidence 6665432 23455544443 66555432 332 345566666665443 56677777777776652111
Q ss_pred C-cccHHHHHHHH-------------HhhCChh-----------------------------------------------
Q 038490 151 D-ACSYNILIHGC-------------VVSRRLE----------------------------------------------- 169 (344)
Q Consensus 151 ~-~~~~~~l~~~~-------------~~~~~~~----------------------------------------------- 169 (344)
+ ...|....... .+.+++.
T Consensus 163 ~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~ 242 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS 242 (530)
T ss_dssp THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHc
Confidence 1 11222111100 0111222
Q ss_pred -------------HHHHHHHHHhhCCCCcCHhhHHHHHHHHHh-------hchHH-------HHHHHHHHHHHhcCCCCC
Q 038490 170 -------------DAWKVFDEMVKRRLQPTLVTFGTLIYGLCL-------ELRVD-------EALKLKEDIMRVYNVKPD 222 (344)
Q Consensus 170 -------------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~ 222 (344)
++..+|++.... .+-+...|......+.+ .|+++ +|..++++.++. -.+.+
T Consensus 243 ~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~ 320 (530)
T 2ooe_A 243 NPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKN 320 (530)
T ss_dssp CSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSC
T ss_pred CCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCccc
Confidence 334445544443 12244455555555544 57765 788888887642 12345
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHH
Q 038490 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA-GIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301 (344)
Q Consensus 223 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 301 (344)
...|..++..+.+.|++++|..+|+++.+..+. +. ..|..++..+.+.|+.++|..+|++..+... .+...|.....
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~ 398 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHH
Confidence 778888888888899999999999998886432 33 5788888888888889999999998887522 12333332222
Q ss_pred H-HhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcCC
Q 038490 302 G-FCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDGK 343 (344)
Q Consensus 302 ~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 343 (344)
. +...|+.++|..+|++..+.. +-+...|..++..+.+.|+
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~ 440 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNE 440 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTC
T ss_pred HHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCC
Confidence 2 335889999999999888752 2357788888888877775
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.65 E-value=1.4e-15 Score=125.14 Aligned_cols=276 Identities=11% Similarity=-0.022 Sum_probs=207.1
Q ss_pred hhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcC---CCC-
Q 038490 5 SIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---RIV- 80 (344)
Q Consensus 5 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~- 80 (344)
....+..+...|++++|+..|+++....+. .......++..+...+...|++++|.+.+++..... +..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 80 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-------DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 80 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccH
Confidence 345678888999999999999997543210 000014678899999999999999999999865431 111
Q ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCC--------------------hH
Q 038490 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNV-QMT----VKFFNTLLNPKLTCGK--------------------LD 135 (344)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~ 135 (344)
....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ ++
T Consensus 81 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (338)
T 3ro2_A 81 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHH
Confidence 2245677888999999999999999998875320 112 3478888899999999 99
Q ss_pred HHHHHHHHHhccCC------CCcccHHHHHHHHHhhCChhHHHHHHHHHhhCC----C-CcCHhhHHHHHHHHHhhchHH
Q 038490 136 RMKELFQIMEKYVS------PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR----L-QPTLVTFGTLIYGLCLELRVD 204 (344)
Q Consensus 136 ~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~ 204 (344)
+|...+++...... ....++..+...+...|++++|...+++..+.. . .....++..+...+...|+++
T Consensus 161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 240 (338)
T 3ro2_A 161 AAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 240 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Confidence 99999887654311 224467888899999999999999999876531 1 111236777888899999999
Q ss_pred HHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHcCCcC
Q 038490 205 EALKLKEDIMRVYNVKPD----GQVFASLIKGLCAVGELSLALGVKEEMVRDKIE-----MDAGIYSSLISALFKAGRKN 275 (344)
Q Consensus 205 ~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~ 275 (344)
+|...+++.++...-..+ ..++..+...+...|++++|...+++..+.... ....++..+...|...|+++
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (338)
T 3ro2_A 241 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 320 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999987754322222 557788889999999999999999988754211 12457788999999999999
Q ss_pred cHHHHHHHHHHc
Q 038490 276 EFPAILKEMKER 287 (344)
Q Consensus 276 ~a~~~~~~~~~~ 287 (344)
+|...+++..+.
T Consensus 321 ~A~~~~~~a~~~ 332 (338)
T 3ro2_A 321 QAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999999998775
No 63
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=3.7e-15 Score=121.28 Aligned_cols=245 Identities=13% Similarity=0.069 Sum_probs=134.6
Q ss_pred CCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcC------CCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhc--
Q 038490 41 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT------RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF-- 112 (344)
Q Consensus 41 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 112 (344)
+..+.+..++..+...+...|++++|..+++++.+.. ..+....++..+...+...|++++|...+++..+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4455667788888888888888888888888877620 01223456677778888888888888888877653
Q ss_pred ----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccC--------CCCcccHHHHHHHHHhhCChhHHHHHHHHHh
Q 038490 113 ----N-VQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV--------SPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179 (344)
Q Consensus 113 ----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (344)
+ .+....++..+...+...|++++|...+++..... +....++..+...+...|++++|...++++.
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 12234456666667777777777777766654431 1123334445555555555555555555544
Q ss_pred hC------CCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 038490 180 KR------RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK 253 (344)
Q Consensus 180 ~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 253 (344)
+. +..| ....++..+..++...|++++|...++++.+..
T Consensus 181 ~~~~~~~~~~~~-----------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 181 EIYQTKLGPDDP-----------------------------------NVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp HHHHHTSCTTCH-----------------------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCH-----------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 32 1111 112234444444444455555444444444310
Q ss_pred -------CCC-------CHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038490 254 -------IEM-------DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319 (344)
Q Consensus 254 -------~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 319 (344)
..+ ....+..+...+...+.+.++...+....... +.+..++..+..+|.+.|++++|..++++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 226 HEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp HHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 000 11223333444555667777777777766542 225566777888888888888888888877
Q ss_pred hh
Q 038490 320 GD 321 (344)
Q Consensus 320 ~~ 321 (344)
.+
T Consensus 305 l~ 306 (311)
T 3nf1_A 305 MR 306 (311)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.64 E-value=1.1e-13 Score=103.60 Aligned_cols=164 Identities=11% Similarity=0.025 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038490 84 IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCV 163 (344)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (344)
.+|..+...+...|++++|++.|++.++.. |-+..++..+..++...|++++|...+.......+.+...+..+...+.
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 344444444444444444444444444433 3334444444444444444444444444444433333344444444444
Q ss_pred hhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 038490 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243 (344)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 243 (344)
..++++.+...+.+..... +.+...+..+...+.+.|++++|+..|++.++.. +.+..++..+..++.+.|++++|.
T Consensus 85 ~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHHHCCCHHHHH
Confidence 4444444444444443331 1123333344444444444444444444444332 223344444444444444444444
Q ss_pred HHHHHHHH
Q 038490 244 GVKEEMVR 251 (344)
Q Consensus 244 ~~~~~~~~ 251 (344)
..|++..+
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444443
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.63 E-value=9.3e-14 Score=104.02 Aligned_cols=167 Identities=15% Similarity=0.056 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHH
Q 038490 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG 196 (344)
Q Consensus 117 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 196 (344)
+..+|..+...|...|++++|...|++..+..|.+..++..+..+|.+.|++++|...+........ .+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 4556666666666666666666666666666665666666666666666666666666666655422 234444455555
Q ss_pred HHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCc
Q 038490 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276 (344)
Q Consensus 197 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 276 (344)
+...++++.+...+.+..+.. +.+...+..+..++.+.|++++|++.|++..+..+. +..+|..+..+|.+.|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 566666666666666655432 334555556666666666666666666666655433 55556666666666666666
Q ss_pred HHHHHHHHHHc
Q 038490 277 FPAILKEMKER 287 (344)
Q Consensus 277 a~~~~~~~~~~ 287 (344)
|+..|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 66666665553
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=6.7e-15 Score=119.78 Aligned_cols=163 Identities=12% Similarity=0.092 Sum_probs=125.0
Q ss_pred CCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhc------CCCCCchhHHHHH
Q 038490 16 KDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD------TRIVPKEIIFCNV 89 (344)
Q Consensus 16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l 89 (344)
|++++|+..|+++...... ...+..+....++..+...+...|++++|...+++.... ...+....++..+
T Consensus 41 g~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 117 (311)
T 3nf1_A 41 GRYEVAVPLCKQALEDLEK---TSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNL 117 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHH---HHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 6788999999887321100 000034456778899999999999999999999998764 1112335678889
Q ss_pred HHHHHhcccHHHHHHHHHHHHhc------CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcc--------CCCCccc
Q 038490 90 IGFYGRARLLERALQMFDEMSSF------NV-QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY--------VSPDACS 154 (344)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~ 154 (344)
...+...|++++|...++++.+. +- +....++..+...+...|++++|...+++.... .+....+
T Consensus 118 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 197 (311)
T 3nf1_A 118 AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT 197 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999999864 21 223567888999999999999999999988665 2234456
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHhhC
Q 038490 155 YNILIHGCVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (344)
+..+...|...|++++|...++++.+.
T Consensus 198 ~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 198 KNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788889999999999999999998764
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.62 E-value=4.6e-14 Score=121.70 Aligned_cols=214 Identities=9% Similarity=-0.096 Sum_probs=183.4
Q ss_pred chHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 038490 63 FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLL-ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141 (344)
Q Consensus 63 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 141 (344)
++++++.++..... .+.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|
T Consensus 84 ~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55566667665553 244678888999999999999 99999999999886 667899999999999999999999999
Q ss_pred HHHhccCCCCcccHHHHHHHHHhh---------CChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhh--------chHH
Q 038490 142 QIMEKYVSPDACSYNILIHGCVVS---------RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE--------LRVD 204 (344)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 204 (344)
++..+.. |+...+..+...+... |++++|+..|++..+.. +-+...|..+..++... |+++
T Consensus 161 ~~al~~~-p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALTHC-KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHTTC-CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhhC-CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9998876 4468889999999999 99999999999998874 33677888888999988 9999
Q ss_pred HHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHH
Q 038490 205 EALKLKEDIMRVYNVK---PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281 (344)
Q Consensus 205 ~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 281 (344)
+|+..|+++++.. + .+...+..+..+|...|++++|...|++..+..+. +...+..+...+...|++++|+..+
T Consensus 239 ~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988763 3 47889999999999999999999999999987655 7788899999999999988888766
Q ss_pred HHH
Q 038490 282 KEM 284 (344)
Q Consensus 282 ~~~ 284 (344)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 543
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.61 E-value=2.3e-14 Score=120.39 Aligned_cols=298 Identities=9% Similarity=0.003 Sum_probs=209.0
Q ss_pred hcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHH--HhcCCchHHH-----------HHHHHhhhcCC
Q 038490 12 PRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKL--GRAKMFDEMQ-----------QILHQLKHDTR 78 (344)
Q Consensus 12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~-----------~~~~~~~~~~~ 78 (344)
..+.+++++|..+++++...-+ .....++...|..++..- .-.+.++.+. +.++.+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~------~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~-- 93 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELD------QMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK-- 93 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH------TSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--
T ss_pred HHHHcCHHHHHHHHHHHHHHHH------hhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--
Confidence 4568999999999998744321 011223444455444332 2234444444 667766543
Q ss_pred CCCchhHH------HHHHHHHHhcccHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhcc
Q 038490 79 IVPKEIIF------CNVIGFYGRARLLERALQMFDEMSSF----NVQM-TVKFFNTLLNPKLTCGKLDRMKELFQIMEKY 147 (344)
Q Consensus 79 ~~~~~~~~------~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 147 (344)
+.+...+ ......+...|++++|...|++..+. +-++ ...++..+..+|...|+++.|...+++....
T Consensus 94 -~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 172 (383)
T 3ulq_A 94 -QARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI 172 (383)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1121222 22566778899999999999999864 2111 3467889999999999999999999887654
Q ss_pred CC--C-----CcccHHHHHHHHHhhCChhHHHHHHHHHhhC----CCCc-CHhhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 038490 148 VS--P-----DACSYNILIHGCVVSRRLEDAWKVFDEMVKR----RLQP-TLVTFGTLIYGLCLELRVDEALKLKEDIMR 215 (344)
Q Consensus 148 ~~--~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 215 (344)
.. + ...+++.+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++.++
T Consensus 173 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 173 YKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 32 1 2357888889999999999999999988753 1111 124677888899999999999999999876
Q ss_pred hc---CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCC---cCcHHHHHHHH
Q 038490 216 VY---NV-KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDK----IEMDAGIYSSLISALFKAGR---KNEFPAILKEM 284 (344)
Q Consensus 216 ~~---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~ 284 (344)
.. +. +....++..+..++.+.|++++|...+++..+.. -+.....+..+...+...|+ .++|+.++++.
T Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 21 22 3346778899999999999999999999987641 11123335667788888888 66777777665
Q ss_pred HHcCCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 038490 285 KERGCKP-NSVTYNALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 285 ~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
+..| ....+..+...|...|++++|...+++..+
T Consensus 333 ---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 333 ---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2223 334677788899999999999999999874
No 69
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.60 E-value=4.1e-12 Score=117.67 Aligned_cols=236 Identities=11% Similarity=0.079 Sum_probs=125.0
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (344)
|...|..++.++.+.|++++|.+.|....+. .+++...+.++.+|++.+++++..... + .++...|..+.
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVG 1202 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHH
Confidence 3444444444444444444444444443332 122222223444444444444322111 1 23333444455
Q ss_pred HHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHH
Q 038490 126 NPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205 (344)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (344)
..|...|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+-.+|...|++..
T Consensus 1203 d~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHH
Confidence 5555555555555555543 245555555555555555555555441 34455555555555555555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCcCcHHHHHHH
Q 038490 206 ALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA--GRKNEFPAILKE 283 (344)
Q Consensus 206 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~ 283 (344)
|...... +..+...+..++..|.+.|.+++|+.+++...... +-....|+-+...|++. ++..++.+.|..
T Consensus 1269 A~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1269 AQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5444322 23355566677788888888888888887777655 33566676676666664 233344444442
Q ss_pred HHHcCCCC------ChhhHHHHHHHHhccCCHHHHHH
Q 038490 284 MKERGCKP------NSVTYNALISGFCKEEDFEAAFT 314 (344)
Q Consensus 284 ~~~~~~~p------~~~~~~~l~~~~~~~~~~~~a~~ 314 (344)
-.. ++| +...|..++..|.+.|+++.|..
T Consensus 1342 rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1342 RVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred hcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 221 221 45668888888888899888873
No 70
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.56 E-value=4.7e-13 Score=100.00 Aligned_cols=166 Identities=13% Similarity=0.001 Sum_probs=112.3
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038490 47 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126 (344)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 126 (344)
...|..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 445666666777777777777777776653 23455666666777777777777777777776654 455666777777
Q ss_pred HHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHH
Q 038490 127 PKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEA 206 (344)
Q Consensus 127 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 206 (344)
.+...|++++|...++++....+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777766666666667777777777777777777777766653 23456666667777777777777
Q ss_pred HHHHHHHHHh
Q 038490 207 LKLKEDIMRV 216 (344)
Q Consensus 207 ~~~~~~~~~~ 216 (344)
...++++++.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 7777776554
No 71
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.55 E-value=5e-12 Score=105.73 Aligned_cols=271 Identities=11% Similarity=0.003 Sum_probs=194.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCc-h----hHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-CCC----H
Q 038490 49 HYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK-E----IIFCNVIGFYGRARLLERALQMFDEMSSFNV-QMT----V 118 (344)
Q Consensus 49 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~ 118 (344)
.+......+...|++++|...+++..... +++ . ..+..+...+...|++++|.+.+++..+..- ..+ .
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 44555667788999999999999987753 222 2 2456677888899999999999998875310 112 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccCC----C----CcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCC--c--C
Q 038490 119 KFFNTLLNPKLTCGKLDRMKELFQIMEKYVS----P----DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ--P--T 186 (344)
Q Consensus 119 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~ 186 (344)
.++..+...+...|++++|...+++...... + ....+..+...+...|++++|...+++....... + .
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 3456778889999999999999988755321 1 2235566788899999999999999998754221 1 2
Q ss_pred HhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC-HHHHH----HHHHHHHhcCChHHHHHHHHHHHHCCCCC---CH
Q 038490 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD-GQVFA----SLIKGLCAVGELSLALGVKEEMVRDKIEM---DA 258 (344)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~ 258 (344)
...+..+...+...|++++|...+++.......... ..... ..+..+...|++++|...+++.......+ ..
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 345667778889999999999999997754222211 22221 23345778999999999999887643321 13
Q ss_pred HHHHHHHHHHHHcCCcCcHHHHHHHHHHc----CCCCCh-hhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 038490 259 GIYSSLISALFKAGRKNEFPAILKEMKER----GCKPNS-VTYNALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 259 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
..+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35677888999999999999999987553 222222 2566677788999999999999998764
No 72
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=1.5e-13 Score=117.81 Aligned_cols=293 Identities=11% Similarity=-0.030 Sum_probs=172.3
Q ss_pred hhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCc---hHHHHHHHHhhhcCCCCCc
Q 038490 6 IRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMF---DEMQQILHQLKHDTRIVPK 82 (344)
Q Consensus 6 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~ 82 (344)
..++..+.+.|++++|+++|+.....+ +..++..+...+...|+. ++|..+|++..+. +
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g-------------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~ 68 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG-------------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----S 68 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-------------CCTGGGTCC-------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC-------------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----C
Confidence 456777888888899988888864332 444555566666667777 7888888777642 4
Q ss_pred hhHHHHHHHHHHhcc-----cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC------------------------
Q 038490 83 EIIFCNVIGFYGRAR-----LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK------------------------ 133 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------------ 133 (344)
+..+..+...+...+ +.++|...|++..+.| .++ .+..|...|...+.
T Consensus 69 ~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g-~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~ 145 (452)
T 3e4b_A 69 PRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG-EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGL 145 (452)
T ss_dssp --CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT-CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC-CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHH
Confidence 445555555444433 7788888888887766 222 33444444433322
Q ss_pred ---------------hHHHHHHHHHHhccCCCCcccHHHHHHHHHhhC---ChhHHHHHHHHHhhCCCCcCHhhHHHHHH
Q 038490 134 ---------------LDRMKELFQIMEKYVSPDACSYNILIHGCVVSR---RLEDAWKVFDEMVKRRLQPTLVTFGTLIY 195 (344)
Q Consensus 134 ---------------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 195 (344)
.+.+..+++.... .++.++..+...|.+.| +.++|+..|++..+.|.. +...+..+..
T Consensus 146 ~Lg~~y~~~~~~~~~~~~a~~~~~~a~~---~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~ 221 (452)
T 3e4b_A 146 AQVLLYRTQGTYDQHLDDVERICKAALN---TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVAR 221 (452)
T ss_dssp HHHHHHHHHTCGGGGHHHHHHHHHHHTT---TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHH
Confidence 2222223333322 33447777778888888 888888888888887633 4444445555
Q ss_pred HHHhh----chHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038490 196 GLCLE----LRVDEALKLKEDIMRVYNVKPDGQVFASLIKG-L--CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268 (344)
Q Consensus 196 ~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 268 (344)
.|... +++++|+..|++.. +.+...+..+... + ...+++++|...|++..+.| +...+..|...|
T Consensus 222 ~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y 293 (452)
T 3e4b_A 222 VLGDATLGTPDEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLY 293 (452)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHhCCCCCCCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 66544 58888888888764 2344555566555 3 45788888888888888775 667777777777
Q ss_pred HHcC-----CcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHh
Q 038490 269 FKAG-----RKNEFPAILKEMKERGCKPNSVTYNALISGFCK----EEDFEAAFTILDEMGDKGCKANPISYNVILGGLC 339 (344)
Q Consensus 269 ~~~g-----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 339 (344)
. .| ++++|...|++.. .| +...+..|...|.. ..+.++|..+|++..+.|. ......|-..|.
T Consensus 294 ~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 294 Y-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFS 365 (452)
T ss_dssp H-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHH
T ss_pred H-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHH
Confidence 6 44 7888888888777 32 56667777766665 3488889999988887763 334444444443
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.54 E-value=6.5e-13 Score=111.56 Aligned_cols=283 Identities=8% Similarity=-0.018 Sum_probs=198.3
Q ss_pred HHhcCCchHHHHHHHHhhhcC-CCCCch--hHHHHHHHH--HHhcccHHHHH-----------HHHHHHHhcCCCCCHHH
Q 038490 57 LGRAKMFDEMQQILHQLKHDT-RIVPKE--IIFCNVIGF--YGRARLLERAL-----------QMFDEMSSFNVQMTVKF 120 (344)
Q Consensus 57 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 120 (344)
+.+.+++++|..+++++.+.. .+..+. ..|-.++.. ....+..+.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 467899999999999987642 122333 333444332 22234444455 6666665432 11111
Q ss_pred ------HHHHHHHHHhcCChHHHHHHHHHHhccCC--C----CcccHHHHHHHHHhhCChhHHHHHHHHHhhC----CC-
Q 038490 121 ------FNTLLNPKLTCGKLDRMKELFQIMEKYVS--P----DACSYNILIHGCVVSRRLEDAWKVFDEMVKR----RL- 183 (344)
Q Consensus 121 ------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~- 183 (344)
+......+...|++++|...+++...... + ...++..+...|...|++++|...+++..+. +.
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 22355677889999999999999876422 2 3467888999999999999999999998653 11
Q ss_pred -CcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CC
Q 038490 184 -QPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD----GQVFASLIKGLCAVGELSLALGVKEEMVR-----DK 253 (344)
Q Consensus 184 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~ 253 (344)
.....++..+...|...|++++|...+++.++...-.++ ..++..+..+|...|++++|...+++..+ ..
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 112356777888999999999999999998764322222 24788899999999999999999999887 33
Q ss_pred CCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcC----CCCChhhHHHHHHHHhccCC---HHHHHHHHHHHhhCCCCC
Q 038490 254 IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG----CKPNSVTYNALISGFCKEED---FEAAFTILDEMGDKGCKA 326 (344)
Q Consensus 254 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p 326 (344)
.+....++..+...+...|++++|...+++..+.. -+.....+..+...+...|+ +++|+.++++. +..|
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence 13356788999999999999999999999876541 11122335667788889999 77777777766 2333
Q ss_pred -ChhhHHHHHHHHhhcCCC
Q 038490 327 -NPISYNVILGGLCKDGKC 344 (344)
Q Consensus 327 -~~~~~~~ll~~~~~~g~~ 344 (344)
....+..+...|.+.|++
T Consensus 337 ~~~~~~~~la~~y~~~g~~ 355 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNF 355 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCH
Confidence 344677778888888763
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.54 E-value=2.2e-12 Score=96.26 Aligned_cols=164 Identities=14% Similarity=0.054 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038490 84 IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCV 163 (344)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (344)
..+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++....+.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 344455556666666666666666665543 3455556666666666666666666666665554445555555555666
Q ss_pred hhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 038490 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLAL 243 (344)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 243 (344)
..|++++|.+.++++.... +.+...+..+...+...|++++|...++++++.. +.+...+..+...+...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666665555442 2234444445555555555555555555554432 233445555555555555555555
Q ss_pred HHHHHHHH
Q 038490 244 GVKEEMVR 251 (344)
Q Consensus 244 ~~~~~~~~ 251 (344)
..++++.+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 75
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.52 E-value=2.7e-12 Score=109.95 Aligned_cols=285 Identities=11% Similarity=-0.008 Sum_probs=188.9
Q ss_pred CCchhhhhhhhcccCCc---hHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcC-----CchHHHHHHHHh
Q 038490 2 PTSSIRLACLPRLQKDP---KLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAK-----MFDEMQQILHQL 73 (344)
Q Consensus 2 p~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~ 73 (344)
|.....++.++...|++ ++|+..|++.... +..++..+...+...+ ++++|...|++.
T Consensus 35 ~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--------------~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~A 100 (452)
T 3e4b_A 35 SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--------------SPRAQARLGRLLAAKPGATEAEHHEAESLLKKA 100 (452)
T ss_dssp CTGGGTCC------------------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--------------CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHH
Confidence 45566788888888888 8999999887321 4556667777555554 678899999887
Q ss_pred hhcCCCCCchhHHHHHHHHHHhc-----------------------------------c----cHHHHHHHHHHHHhcCC
Q 038490 74 KHDTRIVPKEIIFCNVIGFYGRA-----------------------------------R----LLERALQMFDEMSSFNV 114 (344)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~~-----------------------------------~----~~~~a~~~~~~~~~~~~ 114 (344)
...+ .++ .+..|...|... + ..+.+..++.....
T Consensus 101 a~~g--~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~--- 173 (452)
T 3e4b_A 101 FANG--EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN--- 173 (452)
T ss_dssp HHTT--CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT---
T ss_pred HHCC--CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc---
Confidence 7642 122 333344433332 2 23333333333332
Q ss_pred CCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHhccCCCCcccHHHHHHHHHhh----CChhHHHHHHHHHhhCCCCcCH
Q 038490 115 QMTVKFFNTLLNPKLTCG---KLDRMKELFQIMEKYVSPDACSYNILIHGCVVS----RRLEDAWKVFDEMVKRRLQPTL 187 (344)
Q Consensus 115 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~ 187 (344)
.++..+..|...|...| +.++|...|++..+.++++...+..+...|... +++++|..+|++.. .| +.
T Consensus 174 -~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~ 248 (452)
T 3e4b_A 174 -TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YP 248 (452)
T ss_dssp -TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---ST
T ss_pred -CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CH
Confidence 22337788888899999 999999999999998888877778888888665 79999999999988 33 45
Q ss_pred hhHHHHHHH-H--HhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCCCHH
Q 038490 188 VTFGTLIYG-L--CLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG-----ELSLALGVKEEMVRDKIEMDAG 259 (344)
Q Consensus 188 ~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~ 259 (344)
..+..+... + ...+++++|...|++..+. .+...+..+...|. .| ++++|...|++.. . -++.
T Consensus 249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~ 319 (452)
T 3e4b_A 249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVA 319 (452)
T ss_dssp HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHH
Confidence 555556555 3 4689999999999998764 36777878887776 55 9999999999888 3 3777
Q ss_pred HHHHHHHHHHH----cCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHhhCCC
Q 038490 260 IYSSLISALFK----AGRKNEFPAILKEMKERGCKPNSVTYNALISGFCK----EEDFEAAFTILDEMGDKGC 324 (344)
Q Consensus 260 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 324 (344)
.+..|...|.. ..++++|...|++..+.| +......|...|.. ..+.++|..+|+...+.|.
T Consensus 320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 88888887776 348889999999998876 44556667777764 5689999999999999874
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.52 E-value=2e-12 Score=116.13 Aligned_cols=164 Identities=10% Similarity=0.022 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 038490 83 EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGC 162 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (344)
...++.+..++.+.|++++|++.|++.++.. +-+..++..+..+|.+.|++++|...|++..+..+.+..+|..+..+|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4555556666666666666666666665554 334555555555555556666665555555555544555555555555
Q ss_pred HhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHH
Q 038490 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242 (344)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 242 (344)
.+.|++++|++.|++..+... -+...+..+..++.+.|++++|+..|+++++.. +.+...+..+..++...|++++|
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhcccHHHH
Confidence 555555555555555544321 133444444444455555555555555444432 22344444444444444444444
Q ss_pred HHHHHHHH
Q 038490 243 LGVKEEMV 250 (344)
Q Consensus 243 ~~~~~~~~ 250 (344)
.+.++++.
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.51 E-value=1.9e-12 Score=116.21 Aligned_cols=169 Identities=8% Similarity=-0.018 Sum_probs=151.3
Q ss_pred CCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHH
Q 038490 43 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122 (344)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 122 (344)
.|.+..+|+.+..++.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|++.|++.++.+ +-+...|.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~ 81 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYS 81 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 45578899999999999999999999999998853 4457889999999999999999999999999886 66788999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhch
Q 038490 123 TLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR 202 (344)
Q Consensus 123 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 202 (344)
.+..++...|++++|.+.|++..+..+.+..+|+.+..+|.+.|++++|++.|++..+... -+...+..+..++...|+
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhccc
Confidence 9999999999999999999999988888899999999999999999999999999988742 257788889999999999
Q ss_pred HHHHHHHHHHHHH
Q 038490 203 VDEALKLKEDIMR 215 (344)
Q Consensus 203 ~~~a~~~~~~~~~ 215 (344)
+++|.+.++++++
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.50 E-value=1.4e-11 Score=95.45 Aligned_cols=205 Identities=11% Similarity=-0.091 Sum_probs=158.8
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCC-CchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIV-PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTL 124 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 124 (344)
|+..|......+...|++++|+..|++..+.. + ++...+..+..++...|++++|++.|++..+.. +.+..++..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 56888999999999999999999999998863 4 677778889999999999999999999999876 5567889999
Q ss_pred HHHHHhcCChHHHHHHHHHHhccCCCCc-------ccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcC---HhhHHHHH
Q 038490 125 LNPKLTCGKLDRMKELFQIMEKYVSPDA-------CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT---LVTFGTLI 194 (344)
Q Consensus 125 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 194 (344)
..++...|++++|...+++.....+.+. ..|..+...+...|++++|+..|++..+. .|+ ...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999999998877666 55888888899999999999999999876 444 45666666
Q ss_pred HHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038490 195 YGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265 (344)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 265 (344)
..+...|+. .++.+.... ..+...|.... ....+.+++|...+++..+..+. +..+...+.
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~--~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~ 221 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLA--SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQD 221 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGT--TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcc--cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 666655543 333332221 22344444433 23456789999999999987544 555554443
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.47 E-value=4.4e-12 Score=106.03 Aligned_cols=275 Identities=12% Similarity=0.017 Sum_probs=192.4
Q ss_pred hhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch---
Q 038490 7 RLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE--- 83 (344)
Q Consensus 7 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 83 (344)
..+..+...|++++|...+++.....+ .........+++.+...+...|++++|.+.+++......-.++.
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELP------PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCC------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCC------CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 445677789999999999988543321 00000122356778888999999999999999876531111222
Q ss_pred -hHHHHHHHHHHhcccHHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCC-----
Q 038490 84 -IIFCNVIGFYGRARLLERALQMFDEMSSF----NVQ--M-TVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP----- 150 (344)
Q Consensus 84 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----- 150 (344)
.++..+...+...|++++|...+++..+. +.+ | ....+..+...+...|++++|...+++.....+.
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 33566788889999999999999988753 211 2 2346677888999999999999999987654431
Q ss_pred CcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcC--HhhHH----HHHHHHHhhchHHHHHHHHHHHHHhcCCC--CC
Q 038490 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT--LVTFG----TLIYGLCLELRVDEALKLKEDIMRVYNVK--PD 222 (344)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 222 (344)
...++..+...+...|++++|...+++.......++ ..... .....+...|++++|...+++........ ..
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 124567788889999999999999999865311111 11111 22344678999999999998865422111 11
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 223 GQVFASLIKGLCAVGELSLALGVKEEMVRD----KIEMDA-GIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 223 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
...+..+...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++....
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 335667788899999999999999988653 222222 36667788899999999999999987654
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=1.1e-11 Score=96.12 Aligned_cols=206 Identities=11% Similarity=-0.089 Sum_probs=157.7
Q ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHH
Q 038490 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIH 160 (344)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 160 (344)
.++..+......+...|++++|+..|+...+...+++...+..+..++...|++++|...+++.....+.+...+..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45678888899999999999999999999988733788888889999999999999999999999888778889999999
Q ss_pred HHHhhCChhHHHHHHHHHhhCCCCcCH-------hhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC---HHHHHHHH
Q 038490 161 GCVVSRRLEDAWKVFDEMVKRRLQPTL-------VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD---GQVFASLI 230 (344)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 230 (344)
+|...|++++|+..+++..+... .+. ..|..+...+...|++++|+..++++++. .|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHHH
Confidence 99999999999999999987632 234 44677777888999999999999997754 444 46677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHH
Q 038490 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNAL 299 (344)
Q Consensus 231 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 299 (344)
.++...| ...++.+...+.. +...|.... ....+.+++|...+++..+..+. +......+
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l 220 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 7775543 4445555554322 444554443 33456689999999999987432 34444433
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.46 E-value=4.8e-13 Score=107.07 Aligned_cols=235 Identities=12% Similarity=0.022 Sum_probs=158.0
Q ss_pred cccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhc------CCCCCchhHH
Q 038490 13 RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD------TRIVPKEIIF 86 (344)
Q Consensus 13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~ 86 (344)
...|++++|+..|++........ .....+....++..+...+...|++++|...+++.... ...+....++
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKT---SGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATL 88 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHH---HCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 34677777777777653311000 00112346778999999999999999999999998754 1112335678
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhc------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcc--------CCCC
Q 038490 87 CNVIGFYGRARLLERALQMFDEMSSF------N-VQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY--------VSPD 151 (344)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~ 151 (344)
..+...+...|++++|.+.+++..+. . .+....++..+..++...|++++|...+++.... .+..
T Consensus 89 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 88999999999999999999998864 1 1334668888999999999999999999988765 2234
Q ss_pred cccHHHHHHHHHhhCChhHHHHHHHHHhhC-------CCCcCHh-hHHHHHHHHHhhc------hHHHHHHHHHHHHHhc
Q 038490 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKR-------RLQPTLV-TFGTLIYGLCLEL------RVDEALKLKEDIMRVY 217 (344)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~-~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~ 217 (344)
..++..+...|...|++++|...+++..+. ...+... .+..+.......+ .+..+...++....
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 246 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-- 246 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--
Confidence 567888999999999999999999998753 1122222 2222222222222 23333333322110
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038490 218 NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252 (344)
Q Consensus 218 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (344)
..+....++..+...|...|++++|...+++..+.
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11223567888999999999999999999988764
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.45 E-value=2.5e-12 Score=102.83 Aligned_cols=237 Identities=10% Similarity=0.030 Sum_probs=113.3
Q ss_pred HhcCCchHHHHHHHHhhhcC------CCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhc------CC-CCCHHHHHHH
Q 038490 58 GRAKMFDEMQQILHQLKHDT------RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF------NV-QMTVKFFNTL 124 (344)
Q Consensus 58 ~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 124 (344)
...|++++|+..+++..+.. ..+....++..+...+...|++++|...+++..+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34566666666666654420 01123455666667777777777777777766543 11 1223455555
Q ss_pred HHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHH
Q 038490 125 LNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204 (344)
Q Consensus 125 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (344)
..++...|++++|...+++..... ++......+....++..+...+...|+++
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~---------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 144 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIR---------------------------EKVLGKFHPDVAKQLNNLALLCQNQGKAE 144 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHH---------------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHH---------------------------HHHcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 566666666666666655544321 00000000112333444444555555555
Q ss_pred HHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHH
Q 038490 205 EALKLKEDIMRVY------NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD-------KIEM-DAGIYSSLISALFK 270 (344)
Q Consensus 205 ~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~ 270 (344)
+|...++++++.. ..+....++..+..++...|++++|...+++..+. ...+ ....+..+...+..
T Consensus 145 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (283)
T 3edt_B 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES 224 (283)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc
Confidence 5555555544320 01112344555566666666666666666655542 1111 22223333333333
Q ss_pred cCCcCcHHHHHHHHH--H-cC--CCCChhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 038490 271 AGRKNEFPAILKEMK--E-RG--CKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 271 ~g~~~~a~~~~~~~~--~-~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
.+....+..+..... + .+ .+....++..+...|...|++++|..++++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 225 KDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp TCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333322211111 0 11 111334677778888888888888888888765
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.43 E-value=4.6e-11 Score=100.08 Aligned_cols=198 Identities=10% Similarity=0.022 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCC--C-----CcccHHHHHHHHHhhCChhHHHHHHHHHhhC----CCC-cCH
Q 038490 120 FFNTLLNPKLTCGKLDRMKELFQIMEKYVS--P-----DACSYNILIHGCVVSRRLEDAWKVFDEMVKR----RLQ-PTL 187 (344)
Q Consensus 120 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 187 (344)
++..+..+|...|+++.|...+++...... + ...+++.+..+|...|++++|.+.+++..+. +.. ...
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 344444444444444444444444332211 0 1223444455555555555555555544331 111 112
Q ss_pred hhHHHHHHHHHhhchHHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCHHH
Q 038490 188 VTFGTLIYGLCLELRVDEALKLKEDIMRVY---NVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI----EMDAGI 260 (344)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~ 260 (344)
.++..+...+...|++++|...+++.++.. +.+....++..+...+.+.|++++|...+++..+... +.....
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 234445555555555555555555544310 1122244555555556666666666666655554211 111223
Q ss_pred HHHHHHHHHHcCC---cCcHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHh
Q 038490 261 YSSLISALFKAGR---KNEFPAILKEMKERGCKP-NSVTYNALISGFCKEEDFEAAFTILDEMG 320 (344)
Q Consensus 261 ~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 320 (344)
+..+...+...++ +.+|+..+++ .+..| ....+..+...|...|++++|...|++..
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444444454 4444444443 11111 12334455566666666666666666654
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.43 E-value=5.4e-12 Score=105.72 Aligned_cols=238 Identities=11% Similarity=-0.002 Sum_probs=162.3
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCC----chhHHHHHHHHHHhcccHHHHHHHHHHHHhcC-----CCC
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVP----KEIIFCNVIGFYGRARLLERALQMFDEMSSFN-----VQM 116 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~ 116 (344)
....|......+...|++++|+..|++..+.....+ ...++..+...|...|+++.|...+++..+.. ..+
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh
Confidence 445566677778888888888888887654322222 24567777888888888888888888776421 011
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC------CCcccHHHHHHHHHhhCChhHHHHHHHHHhh-----CCCC
Q 038490 117 -TVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS------PDACSYNILIHGCVVSRRLEDAWKVFDEMVK-----RRLQ 184 (344)
Q Consensus 117 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~ 184 (344)
...+++.+..+|...|++++|...+++..+... ....++..+..+|...|++++|...+++..+ .. +
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~ 258 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-D 258 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-G
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-h
Confidence 245677788888888888888888877654321 1234667778888888888888888888776 42 2
Q ss_pred cCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCC-C
Q 038490 185 PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVK---PDGQVFASLIKGLCAVGE---LSLALGVKEEMVRDKIEM-D 257 (344)
Q Consensus 185 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~ 257 (344)
....++..+...+.+.|++++|...+++.++...-. .....+..+...+...++ +.+|...++. .+..+ .
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~ 335 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYI 335 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHH
Confidence 235667777788888888888888888877653322 223445566666667777 6666666665 22222 2
Q ss_pred HHHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 258 AGIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 258 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
...+..+...|...|++++|...|++..+.
T Consensus 336 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 336 EACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345667888888889988888888877653
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.42 E-value=1.5e-10 Score=91.91 Aligned_cols=239 Identities=10% Similarity=0.038 Sum_probs=162.3
Q ss_pred ccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHH
Q 038490 14 LQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFY 93 (344)
Q Consensus 14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 93 (344)
-.|++..++.-...+.+.. +...-..+.+++...|++.... .-.|....+..+...+
T Consensus 25 y~G~yq~~i~e~~~~~~~~-------------~~~~~~~~~Rs~iAlg~~~~~~----------~~~~~~~a~~~la~~~ 81 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVT-------------DNTLLFYKAKTLLALGQYQSQD----------PTSKLGKVLDLYVQFL 81 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCC-------------CHHHHHHHHHHHHHTTCCCCCC----------SSSTTHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhcCccc-------------hHHHHHHHHHHHHHcCCCccCC----------CCCHHHHHHHHHHHHh
Confidence 3578888887555553221 1233344667888888877421 1234443444444433
Q ss_pred HhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC--CCcccHHHHHHHHHhhCChhHH
Q 038490 94 GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PDACSYNILIHGCVVSRRLEDA 171 (344)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a 171 (344)
..+ |+..|+++...+ +++..++..+..++...|++++|++++.+....++ .+...+..++..+.+.|+.+.|
T Consensus 82 -~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A 155 (310)
T 3mv2_B 82 -DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTA 155 (310)
T ss_dssp -TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred -ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHH
Confidence 222 778888887765 56666667888889999999999999998866654 5667788888999999999999
Q ss_pred HHHHHHHhhCCCCc-----CHhhHHHHHHHHH--hhc--hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHH
Q 038490 172 WKVFDEMVKRRLQP-----TLVTFGTLIYGLC--LEL--RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242 (344)
Q Consensus 172 ~~~~~~~~~~~~~~-----~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 242 (344)
.+.+++|.+. .| +..+...+..++. ..| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|
T Consensus 156 ~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eA 230 (310)
T 3mv2_B 156 STIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHH
Confidence 9999998775 45 3555566665533 334 889999999997543 45533434444578899999999
Q ss_pred HHHHHHHHHCC---------CCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcC
Q 038490 243 LGVKEEMVRDK---------IEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG 288 (344)
Q Consensus 243 ~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 288 (344)
.+.++.+.+.. -+-++.++..+|......|+ +|.+++.++....
T Consensus 231 e~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 231 QGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 99998766531 02266777566666666676 8889999988863
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.41 E-value=2.5e-11 Score=97.77 Aligned_cols=235 Identities=11% Similarity=0.047 Sum_probs=160.8
Q ss_pred hHHHHHHHHhhhcCCCCCchhHHHHHHHHHHh--cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 038490 64 DEMQQILHQLKHDTRIVPKEIIFCNVIGFYGR--ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELF 141 (344)
Q Consensus 64 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 141 (344)
.+|.+++.+..+. .+++...+ .+ +.. .+++++|...|+.. ...|...|++++|...|
T Consensus 2 ~~a~~~~~~a~k~--~~~~~~~~-~~---~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 2 SDPVELLKRAEKK--GVPSSGFM-KL---FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSF 60 (292)
T ss_dssp CCHHHHHHHHHHH--SSCCCTHH-HH---HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHH
T ss_pred CcHHHHHHHHHHH--hCcCCCcc-hh---cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 4577777777765 33332223 22 222 22588888888776 33567788888888888
Q ss_pred HHHhccC----CC--CcccHHHHHHHHHhhCChhHHHHHHHHHhhC----CCCc-CHhhHHHHHHHHHhh-chHHHHHHH
Q 038490 142 QIMEKYV----SP--DACSYNILIHGCVVSRRLEDAWKVFDEMVKR----RLQP-TLVTFGTLIYGLCLE-LRVDEALKL 209 (344)
Q Consensus 142 ~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~-~~~~~a~~~ 209 (344)
++..... .+ ...+|+.+..+|.+.|++++|+..+++..+. |... -..++..+...|... |++++|+..
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 8765432 11 2457888888899999999999988887653 2111 134677788888886 999999999
Q ss_pred HHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCcCcHHH
Q 038490 210 KEDIMRVYNVKPD----GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDA------GIYSSLISALFKAGRKNEFPA 279 (344)
Q Consensus 210 ~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~ 279 (344)
|++.++...-..+ ..++..+...+.+.|++++|...+++..+..+.... ..|..+..++...|++++|..
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9988764321111 356788889999999999999999999986544222 156777888899999999999
Q ss_pred HHHHHHHcCCCCCh------hhHHHHHHHHh--ccCCHHHHHHHHHHHhh
Q 038490 280 ILKEMKERGCKPNS------VTYNALISGFC--KEEDFEAAFTILDEMGD 321 (344)
Q Consensus 280 ~~~~~~~~~~~p~~------~~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 321 (344)
.|++..+. .|+. ..+..++.++. ..+++++|+..|+++..
T Consensus 221 ~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 221 TLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 99988764 2321 12344555554 45678888888877654
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.38 E-value=1e-10 Score=92.62 Aligned_cols=171 Identities=7% Similarity=-0.074 Sum_probs=116.2
Q ss_pred CcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCc---hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--CCCH
Q 038490 44 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK---EIIFCNVIGFYGRARLLERALQMFDEMSSFNV--QMTV 118 (344)
Q Consensus 44 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~ 118 (344)
+.+...+......+.+.|++++|+..|+++.... +.+ ...+..+..++.+.|++++|+..|+...+... +...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 3467788888999999999999999999998853 223 56788888999999999999999999998641 1224
Q ss_pred HHHHHHHHHHHh--------cCChHHHHHHHHHHhccCCCCcccHH-----------------HHHHHHHhhCChhHHHH
Q 038490 119 KFFNTLLNPKLT--------CGKLDRMKELFQIMEKYVSPDACSYN-----------------ILIHGCVVSRRLEDAWK 173 (344)
Q Consensus 119 ~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~l~~~~~~~~~~~~a~~ 173 (344)
..+..+..++.. .|++++|...|+++....+.+..... .+...|.+.|++++|+.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 567778888888 89999999999999887765555543 33445555555555555
Q ss_pred HHHHHhhCCCCc--CHhhHHHHHHHHHhh----------chHHHHHHHHHHHHHh
Q 038490 174 VFDEMVKRRLQP--TLVTFGTLIYGLCLE----------LRVDEALKLKEDIMRV 216 (344)
Q Consensus 174 ~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 216 (344)
.|+++.+..... ....+..+..++... |++++|...++++++.
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 555554432110 122333344444433 5555555555555443
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.37 E-value=4.1e-12 Score=91.47 Aligned_cols=147 Identities=10% Similarity=0.034 Sum_probs=100.6
Q ss_pred hhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHH
Q 038490 7 RLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF 86 (344)
Q Consensus 7 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 86 (344)
.|+.++...|++++|+..|+...+. .+.+...+..+...|.+.|++++|++.|++..+.. +-+..+|
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~-----------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~ 68 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS-----------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAH 68 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS-----------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc-----------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHH
Confidence 3567777778888888888776332 23355566677788888888888888888877652 4456777
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHhccCCCCcccHHHHHHHHHhh
Q 038490 87 CNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL-FQIMEKYVSPDACSYNILIHGCVVS 165 (344)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (344)
..+..++...|++++|+..|+...+.+ +-+..++..+..++.+.|++++|... +++..+..|.+..+|......+...
T Consensus 69 ~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 69 RFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 777788888888888888888877765 55677777777777777777665544 4667666666666777666666655
Q ss_pred CC
Q 038490 166 RR 167 (344)
Q Consensus 166 ~~ 167 (344)
|+
T Consensus 148 G~ 149 (150)
T 4ga2_A 148 GE 149 (150)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.36 E-value=7e-11 Score=82.98 Aligned_cols=130 Identities=11% Similarity=0.101 Sum_probs=83.8
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038490 49 HYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128 (344)
Q Consensus 49 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 128 (344)
+|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 45566666777777777777777766542 3345566666666667777777777777766654 44555666666666
Q ss_pred HhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhC
Q 038490 129 LTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (344)
...|++++|...++.+....+.+...+..+...+.+.|++++|...++++...
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 66677777777666666555555556666666666666666666666665543
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.33 E-value=2e-10 Score=90.86 Aligned_cols=184 Identities=8% Similarity=-0.057 Sum_probs=110.1
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCC---cccH
Q 038490 82 KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT---VKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPD---ACSY 155 (344)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~ 155 (344)
+...+..+...+.+.|++++|+..|+.+.+.. +.+ ...+..+..++...|++++|...|+++....+.+ ..++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45556666667777777777777777777654 333 5566777777777777777777777776654422 3345
Q ss_pred HHHHHHHHh--------hCChhHHHHHHHHHhhCCCCcCH-hhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHH
Q 038490 156 NILIHGCVV--------SRRLEDAWKVFDEMVKRRLQPTL-VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVF 226 (344)
Q Consensus 156 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 226 (344)
..+..++.. .|++++|...|+++.+.. |+. .....+.......+. + ...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~-------~------------~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAK-------L------------ARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHH-------H------------HHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHH-------H------------HHHH
Confidence 556666666 677777777777766542 221 111111000000000 0 0113
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHc----------CCcCcHHHHHHHHHHc
Q 038490 227 ASLIKGLCAVGELSLALGVKEEMVRDKIEM--DAGIYSSLISALFKA----------GRKNEFPAILKEMKER 287 (344)
Q Consensus 227 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 287 (344)
..+..+|.+.|++++|...|+++.+..+.. ....+..+..+|... |++++|...|+++.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 455667777888888888888877654321 234566666777655 6677777777777765
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.33 E-value=1.6e-10 Score=88.09 Aligned_cols=162 Identities=7% Similarity=-0.007 Sum_probs=87.5
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCc-hhHHHH----------------HHHHHHhcccHHHHHHHHHHH
Q 038490 47 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK-EIIFCN----------------VIGFYGRARLLERALQMFDEM 109 (344)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~ 109 (344)
...+......+.+.|++++|+..|++..+. .|+ ...+.. +..++.+.|++++|+..|++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 444555666778888899999888888774 243 344444 555556666666666666666
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCC--hhHHHHHHHHHhhCCCCcCH
Q 038490 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRR--LEDAWKVFDEMVKRRLQPTL 187 (344)
Q Consensus 110 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~ 187 (344)
.+.. +.+...+..+..++...|++++|...|++..+..|.+..++..+...|...|+ ...+...+..... ..|..
T Consensus 81 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 157 (208)
T 3urz_A 81 LQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQ 157 (208)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchh
Confidence 5554 44555566666666666666666666666655555555555555555544332 2233333333321 11111
Q ss_pred hhHHHHHHHHHhhchHHHHHHHHHHHH
Q 038490 188 VTFGTLIYGLCLELRVDEALKLKEDIM 214 (344)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 214 (344)
..+.....++...|++++|+..|++++
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 222222333444555555555555544
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.30 E-value=3e-10 Score=79.67 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhh
Q 038490 86 FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165 (344)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (344)
+..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++++....+.+...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4445555566666666666666665544 334555555555555566666666666555554444444555555555555
Q ss_pred CChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHH
Q 038490 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214 (344)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 214 (344)
|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++++
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 55555555555554432 1233344444445555555555555555443
No 93
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.29 E-value=7.8e-11 Score=87.31 Aligned_cols=156 Identities=10% Similarity=-0.017 Sum_probs=65.5
Q ss_pred hhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHH
Q 038490 7 RLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIF 86 (344)
Q Consensus 7 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 86 (344)
..+..+...|++++|+..|+.+... .|.+...+..+..++.+.|++++|+..+++..... |+...+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~-----------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~ 76 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDE-----------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYK 76 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHH-----------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHH
Confidence 3444445555555555555554221 22244445555555555555555555555544321 222211
Q ss_pred HHHHHH-HHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCC--CcccHHHHHHHHH
Q 038490 87 CNVIGF-YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP--DACSYNILIHGCV 163 (344)
Q Consensus 87 ~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~ 163 (344)
..+... +...+....|...+++..+.. +.+...+..+..++...|++++|...|+++.+..+. +...+..+...+.
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 77 SLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence 111111 111111122344444444433 333444444444444455555555554444443331 1234444444444
Q ss_pred hhCChhHHHHHHHH
Q 038490 164 VSRRLEDAWKVFDE 177 (344)
Q Consensus 164 ~~~~~~~a~~~~~~ 177 (344)
..|+.++|...|++
T Consensus 156 ~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 156 ALGQGNAIASKYRR 169 (176)
T ss_dssp HHCSSCHHHHHHHH
T ss_pred HhCCCCcHHHHHHH
Confidence 44444444444443
No 94
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.29 E-value=2.4e-08 Score=88.86 Aligned_cols=324 Identities=9% Similarity=0.007 Sum_probs=199.0
Q ss_pred hhhhcccCC---chHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCc--------hHHHHHHHHhhhcC
Q 038490 9 ACLPRLQKD---PKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMF--------DEMQQILHQLKHDT 77 (344)
Q Consensus 9 ~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~~~ 77 (344)
+..-.+.|+ ++.+..+|++....- +.+|++..|...+....+.++. +.+.++|+.....-
T Consensus 107 i~~E~~~~~~~~~~~v~~lfeRal~~~---------~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~v 177 (679)
T 4e6h_A 107 LSLEFDKMEELDAAVIEPVLARCLSKE---------LGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKC 177 (679)
T ss_dssp HHHHHTC--CCCHHHHHHHHHHHTCSS---------SCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhCCcchHHHHHHHHHHHHHhc---------CCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence 344445666 999999999974332 0136888999888877776654 33557888877655
Q ss_pred CC-CCc-hhHHHHHHHHHH---------hcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------------cCC
Q 038490 78 RI-VPK-EIIFCNVIGFYG---------RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT-------------CGK 133 (344)
Q Consensus 78 ~~-~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~ 133 (344)
|. .++ ...|...+.... ..++++.+.++|+..+......-..+|......-.. ..+
T Consensus 178 G~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~ 257 (679)
T 4e6h_A 178 AIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQ 257 (679)
T ss_dssp TTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHH
T ss_pred CcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHH
Confidence 65 454 466766665533 345677888888888753211112222211110000 001
Q ss_pred hHH-------------------------------------------------------------------HHHHHHHHhc
Q 038490 134 LDR-------------------------------------------------------------------MKELFQIMEK 146 (344)
Q Consensus 134 ~~~-------------------------------------------------------------------a~~~~~~~~~ 146 (344)
++. +..+|++...
T Consensus 258 y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~ 337 (679)
T 4e6h_A 258 YMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ 337 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH
Confidence 111 2233333333
Q ss_pred cCCCCcccHHHHHHHHHhhCChhHHH-HHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcC-------
Q 038490 147 YVSPDACSYNILIHGCVVSRRLEDAW-KVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYN------- 218 (344)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------- 218 (344)
..+.....|...+..+...|+.++|. ++|++.... ++.+...+...+....+.|+++.|..+|+.++....
T Consensus 338 ~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~ 416 (679)
T 4e6h_A 338 HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALM 416 (679)
T ss_dssp HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33334444555555566778888886 899888764 344555566677777788999999999998775310
Q ss_pred -CCCC------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCcCcHHHHHHHH
Q 038490 219 -VKPD------------GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA-GRKNEFPAILKEM 284 (344)
Q Consensus 219 -~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~ 284 (344)
-.|+ ..+|...+....+.|+.+.|..+|....+.........|...+..-.+. ++.+.|..+|+..
T Consensus 417 ~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~ 496 (679)
T 4e6h_A 417 EDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELG 496 (679)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred hccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 0131 3367777777778889999999999998762122344444333333343 4588999999988
Q ss_pred HHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC--ChhhHHHHHHHHhhcCC
Q 038490 285 KERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKA--NPISYNVILGGLCKDGK 343 (344)
Q Consensus 285 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~g~ 343 (344)
.+. .+-+...+...+......|+.+.|..+|++.......+ ....|...++-=.+.|+
T Consensus 497 Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 497 LKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred HHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 876 23355666778887788899999999999988753211 23456666665555554
No 95
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.28 E-value=2.3e-10 Score=92.12 Aligned_cols=62 Identities=5% Similarity=-0.076 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhcC---CCCCc-hhHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 038490 50 YDLIITKLGRAKMFDEMQQILHQLKHDT---RIVPK-EIIFCNVIGFYGRARLLERALQMFDEMSS 111 (344)
Q Consensus 50 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 111 (344)
|...+..|...|++++|.+.|++..... |-+++ ..+|+.+..+|.+.|++++|+..|++..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 105 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ 105 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3333445555566666666555543320 11111 23455555555555666666555555543
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.28 E-value=7.9e-11 Score=106.07 Aligned_cols=180 Identities=11% Similarity=-0.073 Sum_probs=138.9
Q ss_pred cccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHH
Q 038490 13 RLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGF 92 (344)
Q Consensus 13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 92 (344)
...|++++|++.|++.....- .......+.+...|..+..++.+.|++++|++.|++..+.. +.+...+..+..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~---~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGAL---DADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC----------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcc---cccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHH
Confidence 678899999999988741000 00002233477788889999999999999999999988752 4567788888899
Q ss_pred HHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHH
Q 038490 93 YGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAW 172 (344)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 172 (344)
+...|++++|++.|++..+.. +.+...+..+..++.+.|++++ ...|++..+..+.+...|..+..++.+.|++++|.
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999998876 5567888889999999999999 99999988888888888999999999999999999
Q ss_pred HHHHHHhhCCCCcC-HhhHHHHHHHHHhhc
Q 038490 173 KVFDEMVKRRLQPT-LVTFGTLIYGLCLEL 201 (344)
Q Consensus 173 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 201 (344)
+.|++..+.+ |+ ...+..+..++...+
T Consensus 555 ~~~~~al~l~--P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 555 RTLDEVPPTS--RHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHTSCTTS--TTHHHHHHHHHHHTC---
T ss_pred HHHHhhcccC--cccHHHHHHHHHHHHccC
Confidence 9999887663 33 455555665655433
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.28 E-value=1.8e-09 Score=85.74 Aligned_cols=244 Identities=9% Similarity=-0.025 Sum_probs=168.7
Q ss_pred HHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038490 54 ITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK 133 (344)
Q Consensus 54 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 133 (344)
++-..-.|++..++.-...+.. ..++ ....-+.+++...|++... ..-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc-
Confidence 4556678999998884443322 1222 2333456778777776632 11244444444444433 322
Q ss_pred hHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCC-CcCHhhHHHHHHHHHhhchHHHHHHHHHH
Q 038490 134 LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL-QPTLVTFGTLIYGLCLELRVDEALKLKED 212 (344)
Q Consensus 134 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 212 (344)
|...|+++...+.++..+...+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++
T Consensus 85 ---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 ---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp ---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77888887766556666677888999999999999999999877653 22566777888999999999999999999
Q ss_pred HHHhcCCCC-----CHHHHHHHHHHH--HhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHH
Q 038490 213 IMRVYNVKP-----DGQVFASLIKGL--CAVG--ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283 (344)
Q Consensus 213 ~~~~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 283 (344)
+.+. .| +..+...++.++ ...| ++.+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.
T Consensus 162 ~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 162 YTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7554 56 355666666563 3334 8999999999997763 4533444555589999999999999997
Q ss_pred HHHcC-----C----CCChhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 038490 284 MKERG-----C----KPNSVTYNALISGFCKEEDFEAAFTILDEMGDK 322 (344)
Q Consensus 284 ~~~~~-----~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 322 (344)
+.+.. . +-|..+...+|......|+ +|.++++++.+.
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 76531 0 2256666566666666676 889999999875
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.28 E-value=1e-10 Score=105.31 Aligned_cols=172 Identities=8% Similarity=-0.040 Sum_probs=103.5
Q ss_pred HhcCCchHHHHHHHHhh--------hcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038490 58 GRAKMFDEMQQILHQLK--------HDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL 129 (344)
Q Consensus 58 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (344)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|++.|+++.+.+ +.+...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 55666667766666665 32 13344556666666666677777777776666654 445666666666666
Q ss_pred hcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHH
Q 038490 130 TCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKL 209 (344)
Q Consensus 130 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 209 (344)
..|++++|...|++..+..+.+...+..+..++.+.|++++ ++.|++..+.+. -+...+..+..++.+.|++++|+..
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66777777777766666666666666666666666777766 666666665432 2445566666666666777777666
Q ss_pred HHHHHHhcCCCCC-HHHHHHHHHHHHhcC
Q 038490 210 KEDIMRVYNVKPD-GQVFASLIKGLCAVG 237 (344)
Q Consensus 210 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 237 (344)
|+++++. .|+ ...+..+..++...+
T Consensus 557 ~~~al~l---~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPT---SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTT---STTHHHHHHHHHHHTC---
T ss_pred HHhhccc---CcccHHHHHHHHHHHHccC
Confidence 6665432 333 344555555544433
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.28 E-value=2.9e-08 Score=79.51 Aligned_cols=224 Identities=11% Similarity=0.014 Sum_probs=141.3
Q ss_pred HHhcCC-chHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcc--cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----H
Q 038490 57 LGRAKM-FDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR--LLERALQMFDEMSSFNVQMTVKFFNTLLNPK----L 129 (344)
Q Consensus 57 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 129 (344)
..+.|. .++|+++++.+.... +-+..+|+.--.++...+ +++++++.++.++..+ +-+..+|+.--.++ .
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHH
Confidence 334444 468999999988753 334566777677777777 8999999999988876 55556666554444 4
Q ss_pred hc---CChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChh--HHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhch--
Q 038490 130 TC---GKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE--DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR-- 202 (344)
Q Consensus 130 ~~---~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 202 (344)
.. +++++++.+++.+.+..+.+..+|+--...+.+.|.++ ++++.++++.+.+.. +-..|+.-...+...++
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGC
T ss_pred hccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 44 67888888888888888788888888777777788877 888888888876443 55556555444445444
Q ss_pred ----HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcC
Q 038490 203 ----VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS-LALGVKEEMVRDK--IEMDAGIYSSLISALFKAGRKN 275 (344)
Q Consensus 203 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 275 (344)
++++++.+.+++... +-|...|+.+-..+.+.|+.. .+..+..++.+.+ -..+...+..++..|.+.|+.+
T Consensus 198 ~~~~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred hhhhHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 556666666555542 445555555555555555422 2333444433322 0124455555555555555555
Q ss_pred cHHHHHHHHHH
Q 038490 276 EFPAILKEMKE 286 (344)
Q Consensus 276 ~a~~~~~~~~~ 286 (344)
+|.++++.+.+
T Consensus 276 ~A~~~~~~l~~ 286 (306)
T 3dra_A 276 ESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555543
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.27 E-value=1e-10 Score=86.65 Aligned_cols=164 Identities=8% Similarity=-0.078 Sum_probs=108.5
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038490 48 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127 (344)
Q Consensus 48 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (344)
..+......+.+.|++++|...|++..+.. +.+...+..+..++...|++++|+..++...... + +...+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~ 82 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DNSYKSLIAKL 82 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-ChHHHHHHHHH
Confidence 345567777888888888888888877642 4456777778888888888888888888877654 2 44433332222
Q ss_pred -HHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCc-CHhhHHHHHHHHHhhchHHH
Q 038490 128 -KLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP-TLVTFGTLIYGLCLELRVDE 205 (344)
Q Consensus 128 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 205 (344)
+...++...|...+++.....|.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 1122233346677777766666667777777777777777777777777777664322 24456666677777777777
Q ss_pred HHHHHHHHHH
Q 038490 206 ALKLKEDIMR 215 (344)
Q Consensus 206 a~~~~~~~~~ 215 (344)
|...|++.+.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.27 E-value=7.1e-10 Score=84.50 Aligned_cols=163 Identities=8% Similarity=-0.044 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHHHHhccC
Q 038490 85 IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT----------------LLNPKLTCGKLDRMKELFQIMEKYV 148 (344)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~ 148 (344)
.+......+...|++++|+..|+...+.. +.+...+.. +..++.+.|++++|...|++..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34445566778899999999999988765 334555555 6666777777777777777776666
Q ss_pred CCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhch--HHHHHHHHHHHHHhcCCCCCHHHH
Q 038490 149 SPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR--VDEALKLKEDIMRVYNVKPDGQVF 226 (344)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~ 226 (344)
|.+...+..+..++...|++++|+..|++..+.. +-+...+..+...+...|+ ...+...+..+. ...|....+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~ 160 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS---SPTKMQYAR 160 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh---CCCchhHHH
Confidence 6666677777777777777777777777766653 2244555555555544433 233344444322 111222222
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC
Q 038490 227 ASLIKGLCAVGELSLALGVKEEMVRD 252 (344)
Q Consensus 227 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (344)
.....++...|++++|...|++..+.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33334445566666666666666654
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.26 E-value=1.5e-08 Score=81.13 Aligned_cols=233 Identities=8% Similarity=0.026 Sum_probs=183.6
Q ss_pred ccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHhccCCCCcccHHHHHHHH----Hhh---CC
Q 038490 97 RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG--KLDRMKELFQIMEKYVSPDACSYNILIHGC----VVS---RR 167 (344)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 167 (344)
...++|+++++.++..+ +-+..+|+.--.++...+ ++++++..++.+....+.+..+|+.--..+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 34468999999999887 667788888888888888 999999999999998888888887766665 555 78
Q ss_pred hhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC------h
Q 038490 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD--EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE------L 239 (344)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~ 239 (344)
+++++.+++++.+...+ +-..|+.-.-.+.+.|.++ +++..+.++++.. +-+...|+.-.......+. +
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhH
Confidence 99999999999987433 6667776666677778887 9999999998864 5677778777666777776 8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCc-HHHHHHHHHHcC--CCCChhhHHHHHHHHhccCCHHHHHHHH
Q 038490 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE-FPAILKEMKERG--CKPNSVTYNALISGFCKEEDFEAAFTIL 316 (344)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 316 (344)
+++++.++.+....+. |...|+.+...+.+.|+..+ +..+..++...+ -..+...+..+...+.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 8999999999998776 99999999999988888554 556777665543 1237778888999999999999999999
Q ss_pred HHHhhCCCCC-ChhhHHHHH
Q 038490 317 DEMGDKGCKA-NPISYNVIL 335 (344)
Q Consensus 317 ~~~~~~~~~p-~~~~~~~ll 335 (344)
+.+.+. +.| ...-|+...
T Consensus 282 ~~l~~~-~Dpir~~yW~~~~ 300 (306)
T 3dra_A 282 DLLKSK-YNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHT-TCGGGHHHHHHHH
T ss_pred HHHHhc-cChHHHHHHHHHH
Confidence 999863 233 344454443
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.26 E-value=1.9e-10 Score=82.73 Aligned_cols=143 Identities=9% Similarity=-0.119 Sum_probs=79.9
Q ss_pred HHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 038490 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239 (344)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 239 (344)
..+...|++++|+..++...... +-+...+..+...|.+.|++++|+..|+++++.. +.+..+|..+..++.+.|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCch
Confidence 34445566666666666655431 1123344455566666666666666666666542 33456666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHH-HHHHHHcCCCCChhhHHHHHHHHhccC
Q 038490 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI-LKEMKERGCKPNSVTYNALISGFCKEE 307 (344)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~~ 307 (344)
++|...|++..+..+. +...+..+...|.+.|+.++|... +++..+..+. +...|......+...|
T Consensus 82 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 6666666666665433 566666666666666666655543 3555554322 4444554444444444
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.25 E-value=4.7e-10 Score=90.03 Aligned_cols=168 Identities=12% Similarity=0.043 Sum_probs=123.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHH-H
Q 038490 115 QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGT-L 193 (344)
Q Consensus 115 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l 193 (344)
+.+...+..+...+...|++++|...|++.....+.+...+..+...+.+.|++++|...++++... .|+...... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 4455667777778888888888888888888877777788888888888888888888888887665 334332222 2
Q ss_pred HHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC
Q 038490 194 IYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM-DAGIYSSLISALFKAG 272 (344)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 272 (344)
...+...++.+.|...+++.+... +.+...+..+...+...|++++|...+.++.+..+.. +...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 223556677777888888777653 4567778888888888888888888888888765431 2667788888888888
Q ss_pred CcCcHHHHHHHHHH
Q 038490 273 RKNEFPAILKEMKE 286 (344)
Q Consensus 273 ~~~~a~~~~~~~~~ 286 (344)
+.++|...+++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 88888877776543
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.25 E-value=2.5e-09 Score=82.55 Aligned_cols=205 Identities=11% Similarity=0.027 Sum_probs=111.6
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCC-chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCH---HHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVP-KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV---KFF 121 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 121 (344)
+...+..+...+.+.|++++|+..|+++.......| ....+..+..++.+.|++++|+..|+.+.+.. +.+. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 445666777888888999999999998887531112 13567778888888999999999999888764 2222 234
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCH-hhHHHHHHHHHhh
Q 038490 122 NTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL-VTFGTLIYGLCLE 200 (344)
Q Consensus 122 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 200 (344)
..+..++...+.. . ...|..+...+...|++++|...|+++.+.. |+. ........ .
T Consensus 82 ~~~g~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~----l 139 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----A-----------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKR----L 139 (225)
T ss_dssp HHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHH----H
T ss_pred HHHHHHHHhhhhh-----h-----------hhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHH----H
Confidence 4444444432210 0 0112222333444567777777777776652 222 22211110 0
Q ss_pred chHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCcCcHH
Q 038490 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEM--DAGIYSSLISALFKAGRKNEFP 278 (344)
Q Consensus 201 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 278 (344)
+.. ... +. .....+...+.+.|++++|...|+++.+..+.. ....+..+..++.+.|+.++|.
T Consensus 140 ~~~------~~~-~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~ 204 (225)
T 2yhc_A 140 VFL------KDR-LA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAE 204 (225)
T ss_dssp HHH------HHH-HH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHH------HHH-HH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHH
Confidence 000 000 00 011234455666777777777777776653221 1245666667777777777777
Q ss_pred HHHHHHHHcC
Q 038490 279 AILKEMKERG 288 (344)
Q Consensus 279 ~~~~~~~~~~ 288 (344)
+.++.+...+
T Consensus 205 ~~~~~l~~~~ 214 (225)
T 2yhc_A 205 KVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhhC
Confidence 7777666653
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.25 E-value=8.1e-10 Score=88.66 Aligned_cols=170 Identities=11% Similarity=0.015 Sum_probs=138.6
Q ss_pred CCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHH
Q 038490 80 VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILI 159 (344)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 159 (344)
+.+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...++++....+..........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 4456677788888999999999999999999886 667889999999999999999999999998776552222233333
Q ss_pred HHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 038490 160 HGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239 (344)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 239 (344)
..+...++.+.|...+++..... +.+...+..+...+...|++++|...+.++++...-..+...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 44778888999999999988774 34677888889999999999999999999988742223367889999999999999
Q ss_pred HHHHHHHHHHHH
Q 038490 240 SLALGVKEEMVR 251 (344)
Q Consensus 240 ~~a~~~~~~~~~ 251 (344)
++|...+++...
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999998887653
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.22 E-value=3.9e-10 Score=99.68 Aligned_cols=154 Identities=6% Similarity=-0.079 Sum_probs=120.4
Q ss_pred cCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHH
Q 038490 15 QKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYG 94 (344)
Q Consensus 15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 94 (344)
.|++++|+..|++.... .+.+...|..+...+.+.|++++|.+.+++..+.. +.+...+..+..++.
T Consensus 2 ~g~~~~A~~~~~~al~~-----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 68 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH-----------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRW 68 (568)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 47889999999987443 33378889999999999999999999999998752 455788889999999
Q ss_pred hcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhh---CChhHH
Q 038490 95 RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS---RRLEDA 171 (344)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a 171 (344)
..|++++|.+.+++..+.. +.+...+..+..++...|++++|...+++..+..+.+...+..+...+... |+.++|
T Consensus 69 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A 147 (568)
T 2vsy_A 69 TQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVL 147 (568)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHH
Confidence 9999999999999999876 667889999999999999999999999999888777888899999999999 999999
Q ss_pred HHHHHHHhhCC
Q 038490 172 WKVFDEMVKRR 182 (344)
Q Consensus 172 ~~~~~~~~~~~ 182 (344)
.+.+++..+.+
T Consensus 148 ~~~~~~al~~~ 158 (568)
T 2vsy_A 148 SAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhcC
Confidence 99999988764
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.20 E-value=7.2e-10 Score=98.01 Aligned_cols=154 Identities=7% Similarity=-0.161 Sum_probs=115.1
Q ss_pred cCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 038490 60 AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139 (344)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 139 (344)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478889999999887642 4457788888899999999999999999998876 5678888899999999999999999
Q ss_pred HHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhh---chHHHHHHHHHHHHHh
Q 038490 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE---LRVDEALKLKEDIMRV 216 (344)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 216 (344)
.+++..+..+.+...+..+..+|.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|...+++.++.
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999888877778888899999999999999999999988763 23566777888888888 9999999999988876
Q ss_pred c
Q 038490 217 Y 217 (344)
Q Consensus 217 ~ 217 (344)
.
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.20 E-value=1.3e-08 Score=78.53 Aligned_cols=204 Identities=6% Similarity=-0.078 Sum_probs=130.1
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcc---cHHH
Q 038490 83 EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQ-M-TVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC---SYNI 157 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 157 (344)
...+..+...+.+.|++++|+..|+.+.+.... + ....+..+..++.+.|++++|...|+++.+..|.+.. ++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 345556677788889999999999988875411 1 1356777888888899999999999888876654332 3444
Q ss_pred HHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038490 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG 237 (344)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 237 (344)
+..++.+.+.. .++ .|..+...+...|++++|...|+++++.. +.+..........
T Consensus 84 ~g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----- 139 (225)
T 2yhc_A 84 RGLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----- 139 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH-----
T ss_pred HHHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH-----
Confidence 44455443321 111 12223344456799999999999988753 2222222221110
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCC--hhhHHHHHHHHhccCCHHHHHHH
Q 038490 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN--SVTYNALISGFCKEEDFEAAFTI 315 (344)
Q Consensus 238 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~ 315 (344)
..+...+ ......+...|.+.|++++|+..|+++.+..+... ...+..+..++.+.|++++|...
T Consensus 140 -----~~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~ 206 (225)
T 2yhc_A 140 -----VFLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKV 206 (225)
T ss_dssp -----HHHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----HHHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence 0011111 11223567889999999999999999998743211 24677888999999999999999
Q ss_pred HHHHhhCC
Q 038490 316 LDEMGDKG 323 (344)
Q Consensus 316 ~~~~~~~~ 323 (344)
++.+...+
T Consensus 207 ~~~l~~~~ 214 (225)
T 2yhc_A 207 AKIIAANS 214 (225)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhhC
Confidence 99998763
No 110
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.14 E-value=2e-08 Score=89.38 Aligned_cols=250 Identities=14% Similarity=0.093 Sum_probs=180.9
Q ss_pred hhhHHHHHHHHHhcC-------CchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHH-HHHHHHHhcCCCCCH
Q 038490 47 LLHYDLIITKLGRAK-------MFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERAL-QMFDEMSSFNVQMTV 118 (344)
Q Consensus 47 ~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~ 118 (344)
...|...+..--..+ ..+++..+|++.... .+-....|...+..+...|+.++|. ++|+...... +.+.
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~ 378 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSA 378 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCH
Confidence 356766666544332 123466788888875 4556778888888888889988996 9999998754 6677
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccC----------CCC------------cccHHHHHHHHHhhCChhHHHHHHH
Q 038490 119 KFFNTLLNPKLTCGKLDRMKELFQIMEKYV----------SPD------------ACSYNILIHGCVVSRRLEDAWKVFD 176 (344)
Q Consensus 119 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~ 176 (344)
..|..++....+.|+++.|..+|+.+.... .|+ ...|...+....+.|+.+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 788888888899999999999999887542 121 2357777888888899999999999
Q ss_pred HHhhCCCCcCHhhHHHHHHHHHhh-chHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 038490 177 EMVKRRLQPTLVTFGTLIYGLCLE-LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIE 255 (344)
Q Consensus 177 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 255 (344)
+..+.-.......|......-.+. ++.+.|..+|+..++.. +.+...+...+......|+.+.|..+|++.......
T Consensus 459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 988761111233343332222333 45899999999988864 556677778888888889999999999999887542
Q ss_pred C--CHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038490 256 M--DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGF 303 (344)
Q Consensus 256 ~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 303 (344)
+ ....|...+..-.+.|+.+.+..+.+++.+.- |+......++.-|
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence 2 45678888888888999999999999998873 4444444444444
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.12 E-value=1.2e-08 Score=77.77 Aligned_cols=130 Identities=8% Similarity=-0.070 Sum_probs=111.1
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038490 47 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126 (344)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 126 (344)
...+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|+..|+...+.. +.+...+..+..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~ 79 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 3446677888889999999999998763 4577889999999999999999999999999876 667888999999
Q ss_pred HHHhcCChHHHHHHHHHHhccCCCCc----------------ccHHHHHHHHHhhCChhHHHHHHHHHhhCC
Q 038490 127 PKLTCGKLDRMKELFQIMEKYVSPDA----------------CSYNILIHGCVVSRRLEDAWKVFDEMVKRR 182 (344)
Q Consensus 127 ~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (344)
++...|++++|...|++..+..+.+. ..+..+..+|.+.|++++|...|++..+..
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999999888665444 677888889999999999999999988764
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.11 E-value=6.2e-09 Score=79.46 Aligned_cols=128 Identities=7% Similarity=-0.092 Sum_probs=60.5
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcc----cHHHHHHHHHHHHhcCCCCCHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR----LLERALQMFDEMSSFNVQMTVKFF 121 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 121 (344)
+..++..+...+...+++++|.++|++..+. -+...+..+...|.. + ++++|.++|++..+.| +...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 4445555555555555555555555555442 133444444444444 3 5555555555554432 33344
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHhccCCC--CcccHHHHHHHHHh----hCChhHHHHHHHHHhhC
Q 038490 122 NTLLNPKLT----CGKLDRMKELFQIMEKYVSP--DACSYNILIHGCVV----SRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 122 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 181 (344)
..|...|.. .+++++|..+|++..+.++. ...++..|...|.. .+++++|..+|++..+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 444444444 44555555555554443321 13444444444444 44445555555444443
No 113
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.10 E-value=7.4e-09 Score=72.36 Aligned_cols=124 Identities=7% Similarity=-0.059 Sum_probs=101.6
Q ss_pred CCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHH
Q 038490 40 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK 119 (344)
Q Consensus 40 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 119 (344)
....+.+...|..+...+.+.|++++|...|++..+. .+.+...+..+..++...|++++|.+.+++..+.. +.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 85 (133)
T 2lni_A 9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIK 85 (133)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchH
Confidence 4455668888999999999999999999999998875 24467788888899999999999999999998876 56778
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhC
Q 038490 120 FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSR 166 (344)
Q Consensus 120 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (344)
.+..+..++...|++++|...+++.....+.+...+..+..++.+.|
T Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 88888889999999999999998887766656666777777666554
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.10 E-value=1.1e-08 Score=78.03 Aligned_cols=163 Identities=12% Similarity=-0.028 Sum_probs=87.7
Q ss_pred CcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhc----hHHHHHHHHHHHHHhcCCCCCHHHH
Q 038490 151 DACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL----RVDEALKLKEDIMRVYNVKPDGQVF 226 (344)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 226 (344)
+..++..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|...|++..+. .+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 44445555555555555555555555555543 33344444444444 4 566666666555432 244455
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCcCcHHHHHHHHHHcCCCCChhhHH
Q 038490 227 ASLIKGLCA----VGELSLALGVKEEMVRDKIE-MDAGIYSSLISALFK----AGRKNEFPAILKEMKERGCKPNSVTYN 297 (344)
Q Consensus 227 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~ 297 (344)
..+...|.. .+++++|...|++..+.+.. .++..+..|...|.. .+++++|...|++..+. ..+...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 555555544 55666666666666655421 014555566666665 55666666666666654 12334455
Q ss_pred HHHHHHhcc-C-----CHHHHHHHHHHHhhCC
Q 038490 298 ALISGFCKE-E-----DFEAAFTILDEMGDKG 323 (344)
Q Consensus 298 ~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 323 (344)
.|...|... | +.++|..+|++..+.|
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 555555432 2 6667777777666655
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.09 E-value=9.4e-09 Score=83.34 Aligned_cols=227 Identities=9% Similarity=0.017 Sum_probs=136.4
Q ss_pred hcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 038490 59 RAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138 (344)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 138 (344)
..|++++|.+++++..+.. +.. .+...++++.|...|... ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3577888999888876642 111 011135666666666544 34556667777777
Q ss_pred HHHHHHhccCC------CCcccHHHHHHHHHhhCChhHHHHHHHHHhhC----CCCc-CHhhHHHHHHHHHhhchHHHHH
Q 038490 139 ELFQIMEKYVS------PDACSYNILIHGCVVSRRLEDAWKVFDEMVKR----RLQP-TLVTFGTLIYGLCLELRVDEAL 207 (344)
Q Consensus 139 ~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~ 207 (344)
..|.+...... ....+|+.+..+|.+.|++++|+..|++..+. |-.. ...++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 77766544321 11345666777777788888888877776532 2111 13456666677777 8888888
Q ss_pred HHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CCC-HHHHHHHHHHHHHcCCcCcHH
Q 038490 208 KLKEDIMRVYNVKPD----GQVFASLIKGLCAVGELSLALGVKEEMVRDKI----EMD-AGIYSSLISALFKAGRKNEFP 278 (344)
Q Consensus 208 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~-~~~~~~l~~~~~~~g~~~~a~ 278 (344)
..|++.++...-..+ ..++..+...+.+.|++++|+..+++..+... .+. ...+..+..++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888877654211111 35677777888888888888888888775321 111 225556666777778888888
Q ss_pred HHHHHHHHcCCCC-Ch---hhHHHHHHHHhccCCHHHHHH
Q 038490 279 AILKEMKERGCKP-NS---VTYNALISGFCKEEDFEAAFT 314 (344)
Q Consensus 279 ~~~~~~~~~~~~p-~~---~~~~~l~~~~~~~~~~~~a~~ 314 (344)
..|++.. ..... +. .....++.++ ..|+.+.+..
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 8888877 42110 11 1233444444 4566655555
No 116
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.08 E-value=8.6e-10 Score=90.56 Aligned_cols=122 Identities=8% Similarity=-0.062 Sum_probs=70.9
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCc----------------hhHHHHHHHHHHhcccHHHHHHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK----------------EIIFCNVIGFYGRARLLERALQMFDEM 109 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 109 (344)
+...|..+...+.+.|++++|+..|++..... |+ ...+..+..++.+.|++++|+..|++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL---EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh---hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566777777777777777777777766642 22 245555555555555555555555555
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHH
Q 038490 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDA 171 (344)
Q Consensus 110 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 171 (344)
++.. +.+...+..+..+|...|++++|...|++..+..+.+...+..+..++.+.|+.++|
T Consensus 223 l~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 223 LELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5544 344555555555555555555555555555555444455555555555555555554
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.07 E-value=3.9e-07 Score=73.88 Aligned_cols=157 Identities=9% Similarity=-0.009 Sum_probs=96.8
Q ss_pred HHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcc-cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-C
Q 038490 55 TKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRAR-LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC-G 132 (344)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 132 (344)
....+.+..++|+++++.+.... +-+..+|+.--.++...+ .++++++.++.++..+ +-+..+|+.-..++... +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcC
Confidence 33344455567888888887752 334455666555666666 4888888888888776 56677777766666665 5
Q ss_pred -ChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChh--------HHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhch-
Q 038490 133 -KLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE--------DAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR- 202 (344)
Q Consensus 133 -~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 202 (344)
++++++.+++.+.+..+.+..+|+--...+.+.|.++ ++++.++++.+.... +...|+.....+.+.++
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 6777778888877777777777776666665555555 566666666555322 44445444444444443
Q ss_pred ------HHHHHHHHHHHHH
Q 038490 203 ------VDEALKLKEDIMR 215 (344)
Q Consensus 203 ------~~~a~~~~~~~~~ 215 (344)
++++++.+.+.+.
T Consensus 218 ~~~~~~~~eELe~~~~aI~ 236 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIH 236 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHH
Confidence 3444444444443
No 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.06 E-value=2.2e-09 Score=85.77 Aligned_cols=195 Identities=10% Similarity=-0.005 Sum_probs=130.2
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (344)
+...+..+...+.+.|++++|+..|++..... +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 56778888899999999999999999988752 4467788889999999999999999999998876 66788888999
Q ss_pred HHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHH
Q 038490 126 NPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205 (344)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (344)
.++...|++++|...|++.....+.+...+...+....+.. .+.. +........+.+......+. . ...|+.++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~i~~~l~-~-l~~~~~~~ 153 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA---KKKR-WNSIEERRIHQESELHSYLT-R-LIAAERER 153 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH---HHHH-HHHHHHTCCCCCCHHHHHHH-H-HHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH---HHHH-HHHHHHHHHhhhHHHHHHHH-H-HHHHHHHH
Confidence 99999999999999998887655423222222222222211 1111 22222232333444333332 2 23788888
Q ss_pred HHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhc-CChHHHHHHHHHHHHC
Q 038490 206 ALKLKEDIMRVYNVKPDG-QVFASLIKGLCAV-GELSLALGVKEEMVRD 252 (344)
Q Consensus 206 a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 252 (344)
|++.++..++. .|+. .....+...+.+. +.+++|.++|..+.+.
T Consensus 154 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEG---HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTT---TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhcc---ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88888775543 4543 3333444444444 5677888888877653
No 119
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.05 E-value=1.2e-09 Score=82.43 Aligned_cols=159 Identities=8% Similarity=-0.073 Sum_probs=79.7
Q ss_pred CCchhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCC
Q 038490 2 PTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVP 81 (344)
Q Consensus 2 p~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 81 (344)
|..+...+......|++++|.+.|+..... .......+..+...+...|++++|...|++......-.|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~ 72 (198)
T 2fbn_A 4 SHHHHHHSSGRENLYFQGAKKSIYDYTDEE-----------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE 72 (198)
T ss_dssp ------------------CCCSGGGCCHHH-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT
T ss_pred cccccchhhhhhhhhhccccCchhhCCHHH-----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence 344555666667778888888888764221 122455677778888888888888888888776421111
Q ss_pred c--------------hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcc
Q 038490 82 K--------------EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY 147 (344)
Q Consensus 82 ~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 147 (344)
+ ...+..+..++...|++++|+..++...+.. +.+...+..+..++...|++++|...|++....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 73 EWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 1 1445555555555666666666665555543 344555555555555555555555555555554
Q ss_pred CCCCcccHHHHHHHHHhhCChhHHH
Q 038490 148 VSPDACSYNILIHGCVVSRRLEDAW 172 (344)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~~~a~ 172 (344)
.+.+...+..+..++...++.+++.
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555554444444433
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.05 E-value=6e-09 Score=84.48 Aligned_cols=191 Identities=10% Similarity=0.045 Sum_probs=129.8
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCC---CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhccC----CC--Cccc
Q 038490 86 FCNVIGFYGRARLLERALQMFDEMSSFNV---QM--TVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV----SP--DACS 154 (344)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~ 154 (344)
|......|...|++++|...|.+..+... .+ -..+|+.+..+|...|++++|...+++..... .+ ...+
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44455677788999999988888765320 11 13577888888889999999999888765432 11 2356
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHhhC----CCCc-CHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC----HHH
Q 038490 155 YNILIHGCVVSRRLEDAWKVFDEMVKR----RLQP-TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD----GQV 225 (344)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 225 (344)
+..+...|.. |++++|+..|++..+. |... ...++..+...+.+.|++++|+..|++.++...-.++ ...
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 7778888888 9999999999887653 1111 1356777888899999999999999988764321122 235
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CH---HHHHHHHHHHHHcCCcCcHHH
Q 038490 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEM-DA---GIYSSLISALFKAGRKNEFPA 279 (344)
Q Consensus 226 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~---~~~~~l~~~~~~~g~~~~a~~ 279 (344)
+..+..++...|++++|...|++.. ..+.. +. .....++.++ ..|+.+.+..
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 6667777888899999999999988 53221 11 2334445544 5666655544
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.04 E-value=1.4e-08 Score=73.96 Aligned_cols=128 Identities=13% Similarity=0.044 Sum_probs=63.1
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038490 47 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126 (344)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 126 (344)
...|..+...+...|++++|...|++..... +.+..++..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3345555555555566666666665555431 2334455555555555555555555555555543 334445555555
Q ss_pred HHHhcCChHHHHHHHHHHhccCCCCcccHHHH--HHHHHhhCChhHHHHHHHH
Q 038490 127 PKLTCGKLDRMKELFQIMEKYVSPDACSYNIL--IHGCVVSRRLEDAWKVFDE 177 (344)
Q Consensus 127 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~ 177 (344)
++...|++++|...+++.....+.+...+..+ ...+...|++++|...+.+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 55555555555555555544443333333222 2223344444444444443
No 122
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.04 E-value=4.2e-07 Score=73.68 Aligned_cols=221 Identities=10% Similarity=0.016 Sum_probs=171.1
Q ss_pred ccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhccCCCCcccHHHHHHHHHhh-C-ChhHHHH
Q 038490 97 RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG-KLDRMKELFQIMEKYVSPDACSYNILIHGCVVS-R-RLEDAWK 173 (344)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~ 173 (344)
+..++|+++++.++..+ +-+..+|+.--.++...| .+++++.+++.+....+.+..+|+.-...+.+. + +++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 33467999999999887 667788888888888888 599999999999998888999999888888777 7 8999999
Q ss_pred HHHHHhhCCCCcCHhhHHHHHHHHHhhchHH--------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-------
Q 038490 174 VFDEMVKRRLQPTLVTFGTLIYGLCLELRVD--------EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGE------- 238 (344)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------- 238 (344)
.++++.+...+ +-..|+.-.-.+.+.|.++ ++++.+.++++.. +-|...|+.....+.+.++
T Consensus 147 ~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHH
Confidence 99999987533 6666766555556666666 8999999988864 5678888888777777776
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCc--------------------CcHHHHHHHHHHcC-----CCCCh
Q 038490 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK--------------------NEFPAILKEMKERG-----CKPNS 293 (344)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~p~~ 293 (344)
++++++.+++.....+. |...|+.+-..+.+.|+. .+...+..++...+ -.++.
T Consensus 224 ~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 68999999999988766 888998887777777764 33444444444332 13577
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 038490 294 VTYNALISGFCKEEDFEAAFTILDEMGDK 322 (344)
Q Consensus 294 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 322 (344)
.....++..|...|+.++|.++++.+.+.
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 78888999999999999999999999754
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.04 E-value=7e-09 Score=71.94 Aligned_cols=110 Identities=6% Similarity=-0.015 Sum_probs=73.5
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (344)
....+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..|++.++.+ +.+...|..+.
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg 88 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHH
Confidence 44566667777777777777777777766642 3456666667777777777777777777777665 55566677777
Q ss_pred HHHHhcCChHHHHHHHHHHhccCCCCcccHHHH
Q 038490 126 NPKLTCGKLDRMKELFQIMEKYVSPDACSYNIL 158 (344)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 158 (344)
.++...|++++|...|++..+..|.+...+..+
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 777777777777777777766655555544443
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.03 E-value=9.9e-09 Score=71.36 Aligned_cols=123 Identities=9% Similarity=0.003 Sum_probs=94.3
Q ss_pred CCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHH
Q 038490 43 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122 (344)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 122 (344)
.+.+...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...++...+.. +.+...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 84 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHH
Confidence 34466778888888888888888888888887652 4456777778888888888888888888888765 55677788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCCh
Q 038490 123 TLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRL 168 (344)
Q Consensus 123 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (344)
.+..++...|++++|...+++.....+.+...+..+..++.+.|++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8888888888888888888888777666667777777777776654
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.01 E-value=6.4e-08 Score=73.74 Aligned_cols=128 Identities=10% Similarity=-0.087 Sum_probs=102.6
Q ss_pred cHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038490 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGL 233 (344)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 233 (344)
.+..+...+...|++++|...|++.. .|+...+..+...+...|++++|...+++.++.. +.+...+..+..++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHH
Confidence 34556777888899999999888773 5577788888888888999999999998887753 45677888888888
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHHcCCcCcHHHHHHHHHHcC
Q 038490 234 CAVGELSLALGVKEEMVRDKIEMDA----------------GIYSSLISALFKAGRKNEFPAILKEMKERG 288 (344)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 288 (344)
...|++++|...+++..+.... +. ..+..+..++...|++++|...|++..+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8999999999999988876533 22 677788888888888888888888888764
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.01 E-value=2e-08 Score=69.11 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038490 47 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126 (344)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 126 (344)
...|..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 5566677777777777777777777776642 3445666667777777777777777777776654 455666667777
Q ss_pred HHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038490 127 PKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCV 163 (344)
Q Consensus 127 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (344)
++...|++++|...++++....+.+...+..+...+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 7777777777777777766655545555554444443
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.00 E-value=7.3e-09 Score=76.59 Aligned_cols=122 Identities=7% Similarity=0.089 Sum_probs=102.5
Q ss_pred HhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCh--
Q 038490 58 GRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP-KLTCGKL-- 134 (344)
Q Consensus 58 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 134 (344)
...|++++|...++...... +.+...+..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 45788999999999988753 4567888899999999999999999999998876 5677888888888 7788998
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCC
Q 038490 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRR 182 (344)
Q Consensus 135 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 182 (344)
++|...+++.....+.+...+..+...|...|++++|...|+++.+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999988877788889999999999999999999999988873
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.00 E-value=4.2e-08 Score=71.39 Aligned_cols=128 Identities=9% Similarity=-0.004 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038490 84 IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCV 163 (344)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (344)
..+..+...+...|++++|...|+...+.. +.+..++..+..++...|++++|...+++.....+.+...+..+..++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456667777888889999999888888765 5567788888888888888888888888888777777778888888888
Q ss_pred hhCChhHHHHHHHHHhhCCCCcCHhhHH--HHHHHHHhhchHHHHHHHHHHH
Q 038490 164 VSRRLEDAWKVFDEMVKRRLQPTLVTFG--TLIYGLCLELRVDEALKLKEDI 213 (344)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~ 213 (344)
..|++++|...|++..+.... +...+. .....+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 888888888888888765322 333332 2333366778888888877664
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.99 E-value=2.2e-09 Score=85.83 Aligned_cols=195 Identities=9% Similarity=0.015 Sum_probs=136.0
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHH
Q 038490 82 KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161 (344)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 161 (344)
+...+..+...+...|++++|+..|+...+.. +.+...+..+..++...|++++|...+++..+..+.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45677888899999999999999999999876 56888999999999999999999999999999888888899999999
Q ss_pred HHhhCChhHHHHHHHHHhhCCCCcCH-hhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 038490 162 CVVSRRLEDAWKVFDEMVKRRLQPTL-VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240 (344)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 240 (344)
+...|++++|...|++..+.+ |+. ..+...+....+.. .+.... . ......+.+......+.. + ..|+.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~---~~~~~~-~-~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIA---KKKRWN-S-IEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHH---HHHHHH-H-HHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHH---HHHHHH-H-HHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 999999999999999987652 211 11111111111111 111111 1 111234445554444433 2 368889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCcCcHHHHHHHHHHc
Q 038490 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKA-GRKNEFPAILKEMKER 287 (344)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 287 (344)
+|.+.++...+..+. +......+...+.+. +.+++|.++|..+.+.
T Consensus 153 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999888888776432 334444444445554 6678899999877653
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.99 E-value=8.9e-08 Score=77.02 Aligned_cols=162 Identities=10% Similarity=0.001 Sum_probs=98.2
Q ss_pred HHHHHhhCChhHHHHHHHHHhhCCC-CcCH----hhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC----HHHHHHH
Q 038490 159 IHGCVVSRRLEDAWKVFDEMVKRRL-QPTL----VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD----GQVFASL 229 (344)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l 229 (344)
+..+...|++++|...+++..+... .|+. ..+..+...+...+++++|+..++++++...-.++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556666777777777776655321 1221 12223444555566777777777776653222222 2356777
Q ss_pred HHHHHhcCChHHHHHHHHHHHH----C-CCCC-CHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc----CCCCC-hhhHHH
Q 038490 230 IKGLCAVGELSLALGVKEEMVR----D-KIEM-DAGIYSSLISALFKAGRKNEFPAILKEMKER----GCKPN-SVTYNA 298 (344)
Q Consensus 230 ~~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~ 298 (344)
..+|...|++++|...++++.+ . +..+ ...++..+...|.+.|++++|...+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7777777777777777777763 1 1111 2336677777788888888888877776543 11111 456777
Q ss_pred HHHHHhccCC-HHHHHHHHHHHh
Q 038490 299 LISGFCKEED-FEAAFTILDEMG 320 (344)
Q Consensus 299 l~~~~~~~~~-~~~a~~~~~~~~ 320 (344)
+..++.+.|+ +++|...+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 7778888884 588888877765
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.99 E-value=1.4e-07 Score=75.85 Aligned_cols=166 Identities=10% Similarity=-0.044 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCc------ccHHHHHHHHHhhCChhHHHHHHHHHhhCCC---CcC--Hh
Q 038490 120 FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDA------CSYNILIHGCVVSRRLEDAWKVFDEMVKRRL---QPT--LV 188 (344)
Q Consensus 120 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 188 (344)
.+...+..+...|++++|...+.......+... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344556667778888888888877665433221 1233455566677788888888887765321 111 34
Q ss_pred hHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCC-CH
Q 038490 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD-----GQVFASLIKGLCAVGELSLALGVKEEMVRDK----IEM-DA 258 (344)
Q Consensus 189 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 258 (344)
+++.+...|...|++++|...++++++.....++ ..++..+..+|.+.|++++|...+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6677777788888888888888877632111222 1467777778888888888888887776431 111 15
Q ss_pred HHHHHHHHHHHHcCCcCcH-HHHHHHHH
Q 038490 259 GIYSSLISALFKAGRKNEF-PAILKEMK 285 (344)
Q Consensus 259 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 285 (344)
.+|..+..+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5677777788888888887 66666554
No 132
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.97 E-value=8.3e-07 Score=76.59 Aligned_cols=154 Identities=13% Similarity=0.050 Sum_probs=100.4
Q ss_pred CCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCC-chHHHHHHHHhhhcCCCC-CchhHHHHHHHHH
Q 038490 16 KDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKM-FDEMQQILHQLKHDTRIV-PKEIIFCNVIGFY 93 (344)
Q Consensus 16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~ 93 (344)
|+++.|..+|++.... .|++..|...+....+.+. .+....+|+.....-|.. .+...|...+..+
T Consensus 28 ~~~e~~~~iferal~~------------~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~ 95 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK------------SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEE 95 (493)
T ss_dssp TCHHHHHHHHHHHSTT------------CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhcc------------CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Confidence 7899999999997432 2488899999988877763 466778888877654433 3567777777665
Q ss_pred H----hcccHHHHHHHHHHHHhcCCCCCHHHHH-----------------------------------------------
Q 038490 94 G----RARLLERALQMFDEMSSFNVQMTVKFFN----------------------------------------------- 122 (344)
Q Consensus 94 ~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 122 (344)
. ..++.+.+.++|++.+......-...|.
T Consensus 96 ~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W 175 (493)
T 2uy1_A 96 GKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNA 175 (493)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 3 3567888999999888732111111221
Q ss_pred -HHHHHHHhc--CC-----hHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhC
Q 038490 123 -TLLNPKLTC--GK-----LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 123 -~l~~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (344)
..+..-... +- .+.+..+|+++....+.+...|...+..+.+.|+.+.|..++++....
T Consensus 176 ~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 176 ARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 111110010 00 234556777776666666777777788888889999999999988776
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.97 E-value=5.7e-09 Score=74.68 Aligned_cols=123 Identities=9% Similarity=0.029 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCC-chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038490 48 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVP-KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126 (344)
Q Consensus 48 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 126 (344)
.....+.+.+...+.++++++ +.| +...+..+...+.+.|++++|+..|+.+.... |.+...|..+..
T Consensus 10 ~~~~~l~~~~~~~~~l~~al~----------l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~ 78 (151)
T 3gyz_A 10 SISTAVIDAINSGATLKDINA----------IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAA 78 (151)
T ss_dssp HHHHHHHHHHHTSCCTGGGCC----------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHhC----------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 344556666665555544432 233 34566677777778888888888888887776 566777888888
Q ss_pred HHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhC
Q 038490 127 PKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 127 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (344)
++...|++++|...|++.....|.+...|..+..+|.+.|++++|...|++..+.
T Consensus 79 ~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 79 IYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888887777777777888888888888888888888887765
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.97 E-value=1.1e-08 Score=73.11 Aligned_cols=101 Identities=8% Similarity=-0.028 Sum_probs=49.7
Q ss_pred CcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038490 44 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNT 123 (344)
Q Consensus 44 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 123 (344)
|.+...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|+..|++..+.. |.+...|..
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~ 109 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHH
Confidence 3344444555555555555555555555554431 2234444455555555555555555555555443 334444555
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcc
Q 038490 124 LLNPKLTCGKLDRMKELFQIMEKY 147 (344)
Q Consensus 124 l~~~~~~~~~~~~a~~~~~~~~~~ 147 (344)
+..+|...|++++|...|++....
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555555555555555554443
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.96 E-value=8.1e-09 Score=73.86 Aligned_cols=101 Identities=8% Similarity=0.049 Sum_probs=62.0
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (344)
+...+..+...+.+.|++++|...|+...... +.+...+..+..++...|++++|+..|++..+.+ +.+...+..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 55556666666666666666666666665542 3345556666666666666666666666666654 44455566666
Q ss_pred HHHHhcCChHHHHHHHHHHhccCC
Q 038490 126 NPKLTCGKLDRMKELFQIMEKYVS 149 (344)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~ 149 (344)
.++...|++++|...|++.....+
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCc
Confidence 666666666666666666555433
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.95 E-value=2.1e-08 Score=75.70 Aligned_cols=50 Identities=10% Similarity=0.003 Sum_probs=20.6
Q ss_pred hcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHH
Q 038490 59 RAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMS 110 (344)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 110 (344)
..|++++|.++++.+... ......++..+...+...|++++|...+++..
T Consensus 4 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 53 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQ 53 (203)
T ss_dssp ---CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 345555555533333221 11223444444455555555555555554444
No 137
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.95 E-value=3e-08 Score=79.83 Aligned_cols=201 Identities=10% Similarity=-0.025 Sum_probs=133.4
Q ss_pred CcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-CCCH----
Q 038490 44 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNV-QMTV---- 118 (344)
Q Consensus 44 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~---- 118 (344)
.|+..+...+...+.-.- ..++..-... ..+....+...+..+...|++++|...+++..+... .++.
T Consensus 43 ~~~~~~l~~i~~~l~~~~-----~~~~~~~~~~--~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~ 115 (293)
T 3u3w_A 43 YPSMDILQGIAAKLQIPI-----IHFYEVLIYS--DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFL 115 (293)
T ss_dssp CCCHHHHHHHHHHHTCCT-----HHHHHTTTSS--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcCH-----HHHhCCCCCC--cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHH
Confidence 356666666666554221 1222221111 123455666667778888899999999888876431 2221
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccCC--CC----cccHHHHHHHHHhhCChhHHHHHHHHHhh----C-CCCcC-
Q 038490 119 KFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PD----ACSYNILIHGCVVSRRLEDAWKVFDEMVK----R-RLQPT- 186 (344)
Q Consensus 119 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~- 186 (344)
..+..+...+...+++++|...+++...... .+ ..+++.+...|...|++++|...|+++.+ . +..+.
T Consensus 116 ~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (293)
T 3u3w_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD 195 (293)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHH
Confidence 2344566777777889999998888876433 22 22578888889999999999999888873 1 12222
Q ss_pred HhhHHHHHHHHHhhchHHHHHHHHHHHHHhc---CCCCC-HHHHHHHHHHHHhcCC-hHHHHHHHHHHHH
Q 038490 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVY---NVKPD-GQVFASLIKGLCAVGE-LSLALGVKEEMVR 251 (344)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~ 251 (344)
..++..+...|.+.|++++|...+++.++.. +..+. ..+|..+..++.+.|+ +++|.+.+++...
T Consensus 196 ~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 3367778888899999999999988876532 22222 5678888888889994 5889888888764
No 138
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.94 E-value=3.7e-08 Score=68.21 Aligned_cols=97 Identities=10% Similarity=-0.012 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038490 84 IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCV 163 (344)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (344)
..+......+.+.|++++|++.|++.++.. +.+..+|..+..++...|++++|...+++..+..+.+...|..+..++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 455666777777777777777777777665 5566777777777777777777777777777766666677777777777
Q ss_pred hhCChhHHHHHHHHHhhC
Q 038490 164 VSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~ 181 (344)
..|++++|.+.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 777777777777777665
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.94 E-value=5.4e-08 Score=66.90 Aligned_cols=98 Identities=12% Similarity=0.150 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 038490 83 EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGC 162 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (344)
...+..+...+...|++++|.+.++++.+.. +.+..++..+..++...|++++|...++++....+.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 4556666677777777777777777776654 445666666777777777777777777776665555566666666667
Q ss_pred HhhCChhHHHHHHHHHhhC
Q 038490 163 VVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~ 181 (344)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 7777777777777666554
No 140
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.93 E-value=5.2e-07 Score=72.51 Aligned_cols=166 Identities=10% Similarity=-0.006 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHhccCC--CC----c
Q 038490 85 IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV------KFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PD----A 152 (344)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~ 152 (344)
.+...+..+...|++++|.+.+....+.. +... ..+..+...+...|++++|...+++...... .+ .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 44556778889999999999999888754 2222 2344456677888999999999998875433 11 3
Q ss_pred ccHHHHHHHHHhhCChhHHHHHHHHHhh---C-CCCc--CHhhHHHHHHHHHhhchHHHHHHHHHHHHHhc---CCCC-C
Q 038490 153 CSYNILIHGCVVSRRLEDAWKVFDEMVK---R-RLQP--TLVTFGTLIYGLCLELRVDEALKLKEDIMRVY---NVKP-D 222 (344)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~ 222 (344)
.+++.+...|...|++++|...|++..+ . +..+ ...++..+...|...|++++|...+++.++.. +... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4788899999999999999999999873 2 1111 12578888889999999999999999876542 1111 1
Q ss_pred HHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 038490 223 GQVFASLIKGLCAVGELSLA-LGVKEEMVR 251 (344)
Q Consensus 223 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 251 (344)
..+|..+..+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 66788999999999999999 777777653
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.91 E-value=3.7e-08 Score=72.75 Aligned_cols=121 Identities=7% Similarity=0.064 Sum_probs=74.8
Q ss_pred HhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCh--
Q 038490 163 VVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKG-LCAVGEL-- 239 (344)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 239 (344)
...|++++|...+++..+.. +.+...+..+...+...|++++|...++++++.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45566777777777666553 2355566666666777777777777777766543 3355566666666 5566666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
++|...+++..+..+. +...+..+...+...|++++|...|+++.+.
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777777665433 5566666667777777777777777776665
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.91 E-value=1.9e-08 Score=78.83 Aligned_cols=186 Identities=10% Similarity=-0.037 Sum_probs=113.9
Q ss_pred hcccHHHHHHHHHHHHhcCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHhccCC------CC----------
Q 038490 95 RARLLERALQMFDEMSSFNVQMTVKFFNTL-------LNPKLTCGKLDRMKELFQIMEKYVS------PD---------- 151 (344)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~------~~---------- 151 (344)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..++...++.-....+ .+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777777777777765 4556666666 3444444444444444444333211 01
Q ss_pred -----cccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC----
Q 038490 152 -----ACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD---- 222 (344)
Q Consensus 152 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 222 (344)
....-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+ .++
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~d~~~~ 170 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK----WPDKFLA 170 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG----CSCHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCcccH
Confidence 1112345566777888888888887776553 3332333444567778888888888865322 222
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 223 GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD--AGIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 223 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23566667777788888888888887775432133 335566677777788888888888888776
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.90 E-value=3.5e-08 Score=70.00 Aligned_cols=101 Identities=18% Similarity=0.095 Sum_probs=67.6
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (344)
+...+..+...+.+.|++++|...|++..... +.+...+..+..++...|++++|+..|+...+.+ +.+...+..+.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 55566666677777777777777777766642 3455666666777777777777777777777665 45556666667
Q ss_pred HHHHhcCChHHHHHHHHHHhccCC
Q 038490 126 NPKLTCGKLDRMKELFQIMEKYVS 149 (344)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~ 149 (344)
.++...|++++|...|+......+
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Confidence 777777777777777776655443
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.90 E-value=5.8e-08 Score=67.69 Aligned_cols=100 Identities=8% Similarity=-0.038 Sum_probs=71.4
Q ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHH
Q 038490 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIH 160 (344)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 160 (344)
.+...+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++.....+.+...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345566667777777777777777777777654 4466677777777777777777777777777666666667777777
Q ss_pred HHHhhCChhHHHHHHHHHhhC
Q 038490 161 GCVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~ 181 (344)
++.+.|++++|...|++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 777777777777777776654
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.89 E-value=1.9e-08 Score=71.89 Aligned_cols=98 Identities=10% Similarity=-0.025 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 038490 83 EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGC 162 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (344)
...+..+...+...|++++|+..|+.....+ +.+...|..+..++...|++++|...|++.....+.+...+..+..+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3455556666666677777777776666654 455666666666666667777777766666666555666666666666
Q ss_pred HhhCChhHHHHHHHHHhhC
Q 038490 163 VVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~ 181 (344)
...|++++|...|++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666543
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.89 E-value=4.5e-08 Score=73.92 Aligned_cols=158 Identities=11% Similarity=-0.108 Sum_probs=116.3
Q ss_pred HhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcc------CCCCcccHHHHHHHHHhhCC
Q 038490 94 GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY------VSPDACSYNILIHGCVVSRR 167 (344)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~ 167 (344)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.... .+....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4678999999966655442 1345678889999999999999999999887652 11345678888899999999
Q ss_pred hhHHHHHHHHHhhC----CCCc--CHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcC
Q 038490 168 LEDAWKVFDEMVKR----RLQP--TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD----GQVFASLIKGLCAVG 237 (344)
Q Consensus 168 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~ 237 (344)
+++|...+++..+. +..+ ....+..+...+...|++++|...+++.++......+ ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999887653 2122 2345777788889999999999999987754222222 234678888899999
Q ss_pred ChHHHHHHHHHHHHC
Q 038490 238 ELSLALGVKEEMVRD 252 (344)
Q Consensus 238 ~~~~a~~~~~~~~~~ 252 (344)
++++|...+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999888753
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.88 E-value=6.9e-08 Score=66.95 Aligned_cols=98 Identities=7% Similarity=-0.021 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 038490 83 EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGC 162 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (344)
...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++.....+.+...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3445555566666666666666666666554 345555666666666666666666666665555444455555555556
Q ss_pred HhhCChhHHHHHHHHHhhC
Q 038490 163 VVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~ 181 (344)
...|++++|...|++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 6666666666666555544
No 148
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.86 E-value=1.8e-07 Score=73.35 Aligned_cols=199 Identities=9% Similarity=-0.103 Sum_probs=144.4
Q ss_pred hcCCchHHHHHHHHhhhcCCCCCchhHHHHH-------HHHHHhcccHHHHHHHHHHHHh------------cCCC----
Q 038490 59 RAKMFDEMQQILHQLKHDTRIVPKEIIFCNV-------IGFYGRARLLERALQMFDEMSS------------FNVQ---- 115 (344)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~------------~~~~---- 115 (344)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..+++..+..-.. .|+-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 6899999999999999863 4446777777 4566666666666666555544 1210
Q ss_pred ----CCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcC--Hhh
Q 038490 116 ----MTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT--LVT 189 (344)
Q Consensus 116 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 189 (344)
.-......+...+...|++++|.++|+.+...++.+. ....+...+.+.+++++|+..|+...... .|. ...
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 0134456677888899999999999999987665344 66777778999999999999998665432 121 235
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 038490 190 FGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD--GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264 (344)
Q Consensus 190 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 264 (344)
+..+..++...|++++|+..|++.... ...|. .........++.+.|+.++|..+|+++.... |+...+..|
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 667788999999999999999997642 22143 3456667778899999999999999999875 444444444
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.85 E-value=1.5e-07 Score=77.19 Aligned_cols=151 Identities=12% Similarity=0.027 Sum_probs=112.1
Q ss_pred cCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCC---------------HHHHHHH
Q 038490 60 AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT---------------VKFFNTL 124 (344)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l 124 (344)
.+++++|++.++...... +.+...+..+...+.+.|++++|+..|++..+.. +.+ ..+|..+
T Consensus 126 L~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHH
Confidence 455666666665544321 1245677888889999999999999999998875 333 4778888
Q ss_pred HHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHH
Q 038490 125 LNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVD 204 (344)
Q Consensus 125 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (344)
..++.+.|++++|...+++.....+.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888777777888888888888888888888888887763 225566777777777788887
Q ss_pred HH-HHHHHHHH
Q 038490 205 EA-LKLKEDIM 214 (344)
Q Consensus 205 ~a-~~~~~~~~ 214 (344)
++ ...++.++
T Consensus 282 ~a~~~~~~~~~ 292 (336)
T 1p5q_A 282 AREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77 34555554
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.85 E-value=8.9e-08 Score=66.26 Aligned_cols=99 Identities=5% Similarity=-0.047 Sum_probs=59.0
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038490 47 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLN 126 (344)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 126 (344)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..+++..+.+ +.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4455556666666666666666666665542 3345556666666666666666666666666554 444555666666
Q ss_pred HHHhcCChHHHHHHHHHHhccC
Q 038490 127 PKLTCGKLDRMKELFQIMEKYV 148 (344)
Q Consensus 127 ~~~~~~~~~~a~~~~~~~~~~~ 148 (344)
++...|++++|...|++.....
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 6666666666666666555443
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.84 E-value=2.1e-07 Score=63.14 Aligned_cols=109 Identities=8% Similarity=-0.051 Sum_probs=69.2
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (344)
....+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34556666677777777777777777766542 3355566666666777777777777777766654 44566666666
Q ss_pred HHHHhcCChHHHHHHHHHHhccCCCCcccHHH
Q 038490 126 NPKLTCGKLDRMKELFQIMEKYVSPDACSYNI 157 (344)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (344)
.++...|++++|...++...+..+.+...+..
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 111 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 66666777777777776666554444444333
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=2.6e-07 Score=65.67 Aligned_cols=115 Identities=10% Similarity=-0.100 Sum_probs=89.8
Q ss_pred CCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCc----hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCH
Q 038490 43 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK----EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV 118 (344)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 118 (344)
.+.+...+..+...+...|++++|.+.|++..+. .|+ ...+..+..++...|++++|...++...+.. +.+.
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 99 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDV 99 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCH
Confidence 3457788888999999999999999999998874 355 5677778888888999999999998888765 5567
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHH
Q 038490 119 KFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161 (344)
Q Consensus 119 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 161 (344)
..+..+..++...|++++|...|++.....+.+...+..+...
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 7788888888888888888888888877665555555444443
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.82 E-value=2.4e-07 Score=67.40 Aligned_cols=109 Identities=10% Similarity=-0.012 Sum_probs=86.9
Q ss_pred CCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHH
Q 038490 43 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFN 122 (344)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 122 (344)
.+.+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..|++.++.. +.+...|.
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 83 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWS 83 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 34467778888888888999999999998888752 4467778888888888899999999888888876 56678888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhccCCCCccc
Q 038490 123 TLLNPKLTCGKLDRMKELFQIMEKYVSPDACS 154 (344)
Q Consensus 123 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 154 (344)
.+..++...|++++|...|++.....+.+...
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 115 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 88888888888888888888887766544443
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.80 E-value=1.9e-07 Score=64.56 Aligned_cols=98 Identities=7% Similarity=-0.105 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 038490 83 EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGC 162 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (344)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...+++.....+.+...|..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3456666677777788888888888777765 556777777777777778888888877777777666677777777777
Q ss_pred HhhCChhHHHHHHHHHhhC
Q 038490 163 VVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~ 181 (344)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777776654
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.79 E-value=1.9e-08 Score=75.85 Aligned_cols=150 Identities=9% Similarity=-0.096 Sum_probs=88.6
Q ss_pred HHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCH---------------
Q 038490 54 ITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTV--------------- 118 (344)
Q Consensus 54 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------- 118 (344)
+......|.++++.+.++.-... .......+..+...+...|++++|...|++..+.. +.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp -----------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHH
Confidence 33444556666666665433221 11234556677788888899999999998888753 2222
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHH
Q 038490 119 -KFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197 (344)
Q Consensus 119 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 197 (344)
.++..+..++...|++++|...++......+.+...+..+..+|...|++++|...|++..+.. +-+...+..+..++
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 5666677777777777777777777776666666677777777777777777777777766552 22444555555555
Q ss_pred HhhchHHHHH
Q 038490 198 CLELRVDEAL 207 (344)
Q Consensus 198 ~~~~~~~~a~ 207 (344)
...++..++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 156
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.79 E-value=1.7e-07 Score=63.05 Aligned_cols=101 Identities=9% Similarity=-0.091 Sum_probs=73.3
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCC--CHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQM--TVKFFNT 123 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ 123 (344)
+...|..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +. +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 45566677777778888888888888777642 3455667777777777888888888887777764 44 5677777
Q ss_pred HHHHHHhc-CChHHHHHHHHHHhccCC
Q 038490 124 LLNPKLTC-GKLDRMKELFQIMEKYVS 149 (344)
Q Consensus 124 l~~~~~~~-~~~~~a~~~~~~~~~~~~ 149 (344)
+..++... |++++|.+.++.+....+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 77777777 777777777777776554
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.78 E-value=3.5e-05 Score=62.19 Aligned_cols=200 Identities=11% Similarity=0.009 Sum_probs=135.4
Q ss_pred hhhHHHHHHHH---HhcCCch-HHHHHHHHhhhcCCCCCc-hhHHHHHHHHHHhccc----------HHHHHHHHHHHHh
Q 038490 47 LLHYDLIITKL---GRAKMFD-EMQQILHQLKHDTRIVPK-EIIFCNVIGFYGRARL----------LERALQMFDEMSS 111 (344)
Q Consensus 47 ~~~~~~l~~~~---~~~~~~~-~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~ 111 (344)
...|..+...+ .+.|.++ +|++++..+... .|+ ..+|+.--.++...+. +++++.+++.+..
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~---nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~ 102 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR 102 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH
Confidence 44454444433 3456655 789999999874 344 4455543333322222 6788899999888
Q ss_pred cCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCC-hhHHHHHHHHHhhCCCCcCHh
Q 038490 112 FNVQMTVKFFNTLLNPKLTCG--KLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRR-LEDAWKVFDEMVKRRLQPTLV 188 (344)
Q Consensus 112 ~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~ 188 (344)
.+ +-+..+|+.-..++...+ .+++++.+++.+.+..+.+..+|+--...+...|. ++++++.++++.+..+. +..
T Consensus 103 ~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~S 180 (331)
T 3dss_A 103 VN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYS 180 (331)
T ss_dssp HC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHH
T ss_pred hC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHH
Confidence 76 677888888777777777 48899999999998888888888888888888888 58899999998887543 666
Q ss_pred hHHHHHHHHHhh--------------chHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----------CChHHHH
Q 038490 189 TFGTLIYGLCLE--------------LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV-----------GELSLAL 243 (344)
Q Consensus 189 ~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~ 243 (344)
.|+.....+.+. +.++++++.+.+.+... +-|...|+-+-..+.+. +.+++++
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el 258 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL 258 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 676665555444 56777888887777653 45566665444444443 2355666
Q ss_pred HHHHHHHHCC
Q 038490 244 GVKEEMVRDK 253 (344)
Q Consensus 244 ~~~~~~~~~~ 253 (344)
+.++++.+..
T Consensus 259 ~~~~elle~~ 268 (331)
T 3dss_A 259 ESCKELQELE 268 (331)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhhC
Confidence 6666666553
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.78 E-value=4.8e-07 Score=61.30 Aligned_cols=98 Identities=12% Similarity=0.015 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 038490 83 EIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGC 162 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (344)
...+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...+++.....+.+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4456666777777788888888887777665 456667777777777777777777777777766666666777777777
Q ss_pred HhhCChhHHHHHHHHHhhC
Q 038490 163 VVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~ 181 (344)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 7777777777777777665
No 159
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.78 E-value=2.6e-07 Score=78.67 Aligned_cols=215 Identities=8% Similarity=-0.089 Sum_probs=148.8
Q ss_pred CCchhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCC------CcchhhHHHHHHHHHhcCCchHHHHHHHHhhh
Q 038490 2 PTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPF------RYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 75 (344)
Q Consensus 2 p~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 75 (344)
|.+-..-+..+.+.|++++|++.|..+....+.......... +....++..++..|...|++++|.+.+..+..
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 556666678889999999999999886544322111110000 01223578899999999999999999998775
Q ss_pred cCCCCCchh----HHHHHHHHHHhcccHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 038490 76 DTRIVPKEI----IFCNVIGFYGRARLLERALQMFDEMSSF----NVQM-TVKFFNTLLNPKLTCGKLDRMKELFQIMEK 146 (344)
Q Consensus 76 ~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 146 (344)
..+..++.. +.+.+-..+...|+.+.|..++...... +..+ ...++..+...+...|++++|..+++.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 422222221 2333444455678999999999887642 2222 356788899999999999999999988754
Q ss_pred cCC------CCcccHHHHHHHHHhhCChhHHHHHHHHHhhC----CCCcC--HhhHHHHHHHHHhhchHHHHHHHHHHHH
Q 038490 147 YVS------PDACSYNILIHGCVVSRRLEDAWKVFDEMVKR----RLQPT--LVTFGTLIYGLCLELRVDEALKLKEDIM 214 (344)
Q Consensus 147 ~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 214 (344)
... ....++..++..|...|++++|...+++.... +.++. ...+..+...+...+++++|...|.+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 322 12457888899999999999999999887642 21211 2345555666778899999999988876
Q ss_pred Hh
Q 038490 215 RV 216 (344)
Q Consensus 215 ~~ 216 (344)
+.
T Consensus 244 ~~ 245 (434)
T 4b4t_Q 244 ES 245 (434)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.77 E-value=2.8e-07 Score=65.25 Aligned_cols=99 Identities=9% Similarity=-0.037 Sum_probs=84.9
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHH
Q 038490 82 KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161 (344)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 161 (344)
+...+..+...+.+.|++++|...|+.....+ +.+...|..+..++...|++++|...|++.....+.+...+..+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 34556667788889999999999999998876 66788888899999999999999999999988888788888889999
Q ss_pred HHhhCChhHHHHHHHHHhhC
Q 038490 162 CVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~ 181 (344)
|...|++++|...|++..+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999988765
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.77 E-value=4.9e-08 Score=83.63 Aligned_cols=126 Identities=9% Similarity=-0.038 Sum_probs=69.7
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCc-------------hhHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK-------------EIIFCNVIGFYGRARLLERALQMFDEMSSF 112 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 112 (344)
....|..+...+.+.|++++|+..|++..+.....++ ...|..+..++.+.|++++|+..+++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4556777777888888888888888877764211110 244555555555555555555555555554
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHH
Q 038490 113 NVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAW 172 (344)
Q Consensus 113 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 172 (344)
. +.+...|..+..+|...|++++|...|++..+..+.+...+..+..++.+.++.+++.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3445555555555555555555555555555554444455555555555555544443
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.76 E-value=1.3e-07 Score=63.50 Aligned_cols=100 Identities=4% Similarity=-0.033 Sum_probs=77.6
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCC--CcccHHHHH
Q 038490 82 KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSP--DACSYNILI 159 (344)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 159 (344)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34556667777888888888888888887765 556777778888888888888888888888776666 677777888
Q ss_pred HHHHhh-CChhHHHHHHHHHhhCC
Q 038490 160 HGCVVS-RRLEDAWKVFDEMVKRR 182 (344)
Q Consensus 160 ~~~~~~-~~~~~a~~~~~~~~~~~ 182 (344)
.++.+. |++++|.+.+++.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 888888 88888888888877653
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.76 E-value=1.8e-07 Score=65.61 Aligned_cols=99 Identities=13% Similarity=0.006 Sum_probs=65.5
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (344)
+...|..+...+...|++++|...|+...... +.+...+..+..++...|++++|...++...+.+ +.+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 56666677777777777777777777766542 3345666666667777777777777777766655 44566666666
Q ss_pred HHHHhcCChHHHHHHHHHHhcc
Q 038490 126 NPKLTCGKLDRMKELFQIMEKY 147 (344)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~ 147 (344)
.++...|++++|...|++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 6666777777777666666544
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.73 E-value=3.4e-07 Score=66.57 Aligned_cols=99 Identities=6% Similarity=0.011 Sum_probs=66.2
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHH
Q 038490 82 KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161 (344)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 161 (344)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++.....+.+...|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34556666666777777777777777776654 44566666666777777777777777777666665566666666666
Q ss_pred HHhhCChhHHHHHHHHHhhC
Q 038490 162 CVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~ 181 (344)
|...|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 66667777776666666554
No 165
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.73 E-value=1.9e-05 Score=63.78 Aligned_cols=233 Identities=7% Similarity=-0.069 Sum_probs=164.4
Q ss_pred ccCCch-HHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCC----------chHHHHHHHHhhhcCCCCCc
Q 038490 14 LQKDPK-LALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKM----------FDEMQQILHQLKHDTRIVPK 82 (344)
Q Consensus 14 ~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~ 82 (344)
+.|.++ +|+.+++.+... .|-+..+|+.--.++...+. +++++.+++.+.... +-+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~-----------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKn 107 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA-----------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKS 107 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT-----------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTC
T ss_pred HcCCCCHHHHHHHHHHHHH-----------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCC
Confidence 455554 799999997433 34477888877666665554 678999999988753 556
Q ss_pred hhHHHHHHHHHHhcc--cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhccCCCCcccHHHHH
Q 038490 83 EIIFCNVIGFYGRAR--LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK-LDRMKELFQIMEKYVSPDACSYNILI 159 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~ 159 (344)
..+|+.-.-++...+ .+++++.+++.+.+.. +.+..+|+.-..+....|. ++++++.++.+....+.+..+|+...
T Consensus 108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~ 186 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS 186 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 777777666666777 4899999999999987 7788899888888888888 69999999999998888999998877
Q ss_pred HHHHhh--------------CChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhh-----------chHHHHHHHHHHHH
Q 038490 160 HGCVVS--------------RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE-----------LRVDEALKLKEDIM 214 (344)
Q Consensus 160 ~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~ 214 (344)
..+.+. +.++++++.+.+..... +-|...|+.+-..+.+. +.++++++.+++++
T Consensus 187 ~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell 265 (331)
T 3dss_A 187 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ 265 (331)
T ss_dssp HHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH
Confidence 777665 45788999999988764 33666666444444443 56889999999988
Q ss_pred HhcCCCCCH-HHHHHHHH---HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038490 215 RVYNVKPDG-QVFASLIK---GLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265 (344)
Q Consensus 215 ~~~~~~~~~-~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 265 (344)
+. .|+. -++..++. .....+..+++...+.++.+.++. ...-|.-+.
T Consensus 266 e~---~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~-r~~~y~d~~ 316 (331)
T 3dss_A 266 EL---EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLR 316 (331)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG-GHHHHHHHH
T ss_pred hh---CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc-hhhHHHHHH
Confidence 75 4543 22222221 112345666777777777765422 333344433
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.71 E-value=4.5e-07 Score=63.59 Aligned_cols=100 Identities=7% Similarity=-0.062 Sum_probs=75.0
Q ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHH
Q 038490 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIH 160 (344)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 160 (344)
.+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...++......+.+...+..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 456667777777778888888888888777765 5566777777777778888888888887777766666777777777
Q ss_pred HHHhhCChhHHHHHHHHHhhC
Q 038490 161 GCVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~ 181 (344)
++...|++++|...|++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 777778887777777776654
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.70 E-value=4.4e-07 Score=62.85 Aligned_cols=94 Identities=10% Similarity=0.030 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCc-------ccHHHH
Q 038490 86 FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDA-------CSYNIL 158 (344)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l 158 (344)
+..+...+.+.|++++|+..|++.++.. |.+..+|..+..+|...|++++|+..+++..+..+.+. .+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3444455555555555555555555443 33444555555555555555555555554443322111 123334
Q ss_pred HHHHHhhCChhHHHHHHHHHhh
Q 038490 159 IHGCVVSRRLEDAWKVFDEMVK 180 (344)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~~ 180 (344)
..++...|++++|++.|++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4444455555555555555443
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.68 E-value=2.3e-07 Score=64.30 Aligned_cols=27 Identities=11% Similarity=0.286 Sum_probs=12.0
Q ss_pred cHHHHHHHHHhhCChhHHHHHHHHHhh
Q 038490 154 SYNILIHGCVVSRRLEDAWKVFDEMVK 180 (344)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (344)
++..+..++...|++++|...|++..+
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 169
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.68 E-value=8.5e-05 Score=64.11 Aligned_cols=261 Identities=6% Similarity=-0.031 Sum_probs=145.7
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhccc-HHHHHHHHHHHHhc-CC-CCCHHHHHHH
Q 038490 48 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL-LERALQMFDEMSSF-NV-QMTVKFFNTL 124 (344)
Q Consensus 48 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l 124 (344)
.+|...+..+-. |+++.+..+|++.... .|+...|...+....+.+. .+....+|+..... |. +.+...|...
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 344444444443 8899999999999874 4799999988888777663 45677888887753 42 3467888888
Q ss_pred HHHHH----hcCChHHHHHHHHHHhccCCCCc-ccHHHHHH---------------------------------------
Q 038490 125 LNPKL----TCGKLDRMKELFQIMEKYVSPDA-CSYNILIH--------------------------------------- 160 (344)
Q Consensus 125 ~~~~~----~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~--------------------------------------- 160 (344)
+..+. ..++.+.+..+|++....+..+. ..|.....
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 87654 34678889999999877422211 11111100
Q ss_pred -----HHHh--hCC---------hhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHH
Q 038490 161 -----GCVV--SRR---------LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQ 224 (344)
Q Consensus 161 -----~~~~--~~~---------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 224 (344)
.|.. .++ .+.+..+|+++... .+.+...|...+.-+.+.|+.+.|..++++.+.. +.+..
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~ 247 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMF 247 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSH
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHH
Confidence 0000 011 12345566666554 2334556666666667788888998888887765 22221
Q ss_pred HH----------------------------------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 038490 225 VF----------------------------------------ASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSL 264 (344)
Q Consensus 225 ~~----------------------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 264 (344)
.+ ...+....+.++.+.|..+|+.. .. ...+..+|...
T Consensus 248 l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~ 325 (493)
T 2uy1_A 248 LSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYC 325 (493)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHH
Confidence 11 11122222344566666666666 21 11233333322
Q ss_pred HHHHHHc-CCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038490 265 ISALFKA-GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEM 319 (344)
Q Consensus 265 ~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 319 (344)
+..-... ++.+.|..+|+...+.-.. +...+...+....+.|+.+.|..+|+++
T Consensus 326 A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 326 AFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2222222 2466666666666554211 2334444555555566666666666654
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.66 E-value=3.4e-07 Score=63.39 Aligned_cols=113 Identities=9% Similarity=0.003 Sum_probs=92.9
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCC-------H
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT-------V 118 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~ 118 (344)
....|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++...+.. +.+ .
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 79 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHH
Confidence 45678889999999999999999999998753 5567888899999999999999999999998764 222 7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 038490 119 KFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGC 162 (344)
Q Consensus 119 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (344)
.++..+..++...|++++|...|+......+ +......+....
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 7888999999999999999999999887654 555555444443
No 171
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.66 E-value=8.1e-07 Score=61.49 Aligned_cols=96 Identities=6% Similarity=0.003 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCC--CcC----HhhHHHH
Q 038490 120 FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL--QPT----LVTFGTL 193 (344)
Q Consensus 120 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l 193 (344)
.+..+...+.+.|++++|+..|++..+..|.+...|..+..+|.+.|++++|++.+++..+.+. .++ ..+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4555666677777777777777777666666666677777777777777777777776654311 001 1234444
Q ss_pred HHHHHhhchHHHHHHHHHHHHH
Q 038490 194 IYGLCLELRVDEALKLKEDIMR 215 (344)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~~~~ 215 (344)
..++...|++++|+..|++.+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4555555666666666665554
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.64 E-value=9.4e-07 Score=75.17 Aligned_cols=199 Identities=8% Similarity=-0.025 Sum_probs=141.0
Q ss_pred HHHHHHhcCCchHHHHHHHHhhhcCCCCCch---------------hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-C
Q 038490 53 IITKLGRAKMFDEMQQILHQLKHDTRIVPKE---------------IIFCNVIGFYGRARLLERALQMFDEMSSFNVQ-M 116 (344)
Q Consensus 53 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 116 (344)
-...+.+.|++++|++.|..+.+...-..+. ..+..+...|...|++++|.+.+..+...--. +
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 4567788999999999999988753211111 23678899999999999999999988753111 1
Q ss_pred CH----HHHHHHHHHHHhcCChHHHHHHHHHHhccCC------CCcccHHHHHHHHHhhCChhHHHHHHHHHhhC----C
Q 038490 117 TV----KFFNTLLNPKLTCGKLDRMKELFQIMEKYVS------PDACSYNILIHGCVVSRRLEDAWKVFDEMVKR----R 182 (344)
Q Consensus 117 ~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~ 182 (344)
+. .+.+.+-..+...|+.+.|..+++....... ....++..+...|...|++++|..+++++... +
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 2233344445567899999999887654321 22446778899999999999999999987643 1
Q ss_pred CCc-CHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038490 183 LQP-TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD-----GQVFASLIKGLCAVGELSLALGVKEEMVR 251 (344)
Q Consensus 183 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 251 (344)
-.+ ....+..++..|...|++++|...+++......-.++ ...+..+...+...+++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111 2456778889999999999999999887653221221 24556666777788999999888877754
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.62 E-value=4.7e-07 Score=62.10 Aligned_cols=97 Identities=4% Similarity=-0.113 Sum_probs=61.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038490 49 HYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128 (344)
Q Consensus 49 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 128 (344)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..|++..+.. +.+...+..+..++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 35556666667777777777777766642 3355666666666667777777777777666655 44556666666666
Q ss_pred HhcCChHHHHHHHHHHhccC
Q 038490 129 LTCGKLDRMKELFQIMEKYV 148 (344)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~ 148 (344)
...|++++|...+++..+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 66666777766666665543
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.60 E-value=6.9e-07 Score=61.25 Aligned_cols=96 Identities=8% Similarity=-0.118 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038490 85 IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVV 164 (344)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (344)
.+..+...+.+.|++++|+..|+...+.. +.+...|..+..++...|++++|...|++.....+.+...+..+..++..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35566778889999999999999999886 66889999999999999999999999999999888888899999999999
Q ss_pred hCChhHHHHHHHHHhhC
Q 038490 165 SRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 165 ~~~~~~a~~~~~~~~~~ 181 (344)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999998865
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=1.9e-06 Score=61.10 Aligned_cols=99 Identities=10% Similarity=-0.061 Sum_probs=77.8
Q ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHH
Q 038490 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT----VKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYN 156 (344)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (344)
.+...+..+...+...|++++|.+.|++..+.. |+ ...+..+..++...|++++|...+++.....+.+...+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 355677778888888899999999998888764 44 567777788888888888888888887776666677777
Q ss_pred HHHHHHHhhCChhHHHHHHHHHhhC
Q 038490 157 ILIHGCVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 157 ~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (344)
.+..++...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7788888888888888888887765
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.59 E-value=2.1e-06 Score=59.31 Aligned_cols=97 Identities=11% Similarity=-0.024 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch---hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCC---HHHHHH
Q 038490 50 YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE---IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT---VKFFNT 123 (344)
Q Consensus 50 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 123 (344)
+..+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...|+.+.+.. +.+ ...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHH
Confidence 3445666777777777777777776642 2222 356666677777777777777777776654 333 455666
Q ss_pred HHHHHHhcCChHHHHHHHHHHhccCC
Q 038490 124 LLNPKLTCGKLDRMKELFQIMEKYVS 149 (344)
Q Consensus 124 l~~~~~~~~~~~~a~~~~~~~~~~~~ 149 (344)
+..++...|++++|...|+.+....+
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 66677777777777777777665544
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.59 E-value=6.2e-08 Score=83.39 Aligned_cols=124 Identities=14% Similarity=0.047 Sum_probs=102.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038490 50 YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKL 129 (344)
Q Consensus 50 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (344)
+..+...+.+.|++++|++.|++..+.. +.+...+..+..++.+.|++++|++.+++..+.. +.+...+..+..+|.
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 85 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3334455678899999999999998852 4457889999999999999999999999999986 667889999999999
Q ss_pred hcCChHHHHHHHHHHhccCCCCcccHHHHHHH--HHhhCChhHHHHHHH
Q 038490 130 TCGKLDRMKELFQIMEKYVSPDACSYNILIHG--CVVSRRLEDAWKVFD 176 (344)
Q Consensus 130 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 176 (344)
..|++++|...+++..+..+.+...+..+..+ +.+.|++++|++.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999988877666777777666 888999999999998
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.55 E-value=9.2e-08 Score=78.52 Aligned_cols=149 Identities=7% Similarity=-0.081 Sum_probs=75.2
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (344)
....+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ..+|..+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla 237 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH----------HHHHHHHH
Confidence 4556778888888999999999999998764 344331 222333333332221 12566666
Q ss_pred HHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHH-HHhhchHH
Q 038490 126 NPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYG-LCLELRVD 204 (344)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 204 (344)
.++.+.|++++|...+++.....+.+...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777776666566666777777777777777777777776554211 22333333322 22344556
Q ss_pred HHHHHHHHHHH
Q 038490 205 EALKLKEDIMR 215 (344)
Q Consensus 205 ~a~~~~~~~~~ 215 (344)
.+...|..++.
T Consensus 317 ~a~~~~~~~l~ 327 (338)
T 2if4_A 317 KQKEMYKGIFK 327 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHhhC
Confidence 66666666554
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.50 E-value=3.6e-06 Score=58.12 Aligned_cols=93 Identities=12% Similarity=-0.011 Sum_probs=54.3
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHhccCCCC---cccHHHHHHH
Q 038490 88 NVIGFYGRARLLERALQMFDEMSSFNVQMTV---KFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPD---ACSYNILIHG 161 (344)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~ 161 (344)
.+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...++.+....+.+ ..++..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34455556666666666666666543 2222 355556666666666666666666665554433 3445555566
Q ss_pred HHhhCChhHHHHHHHHHhhC
Q 038490 162 CVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~ 181 (344)
+.+.|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666665554
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.50 E-value=1.7e-06 Score=71.86 Aligned_cols=138 Identities=5% Similarity=-0.095 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038490 48 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127 (344)
Q Consensus 48 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (344)
..|..+...+.+.|++++|++.|++..+.. +... .... .+...... +.+..+|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~-------~~~~~~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAE-------DADGAKLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSC-------HHHHGGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccC-------hHHHHHHH-HHHHHHHHHHHHH
Confidence 346666777777777777777777766520 0000 0000 00000011 2233455555555
Q ss_pred HHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHH
Q 038490 128 KLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207 (344)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 207 (344)
|.+.|++++|...+++..+..+.+...+..+..+|...|++++|...|++..+.. +.+...+..+...+...++.+++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666655555555555566666666666666666666655542 113444444444555555555444
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.48 E-value=4.1e-06 Score=71.77 Aligned_cols=144 Identities=11% Similarity=0.032 Sum_probs=102.7
Q ss_pred CCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCC---------------HHHHHHHH
Q 038490 61 KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT---------------VKFFNTLL 125 (344)
Q Consensus 61 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~ 125 (344)
+++++|.+.|+...... +-....+..+...+.+.|++++|+..|++.++.. +.+ ..+|..+.
T Consensus 248 ~~~~~A~~~~~~~~~~~--~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK--LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHH
Confidence 44555655554433321 1234567778888889999999999999988754 223 57788888
Q ss_pred HHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHH
Q 038490 126 NPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDE 205 (344)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (344)
.+|.+.|++++|...+++.....+.+...|..+..+|...|++++|...|++..+... -+...+..+..++.+.++.++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888887777778888888888888888888888888877632 244566666677777777776
Q ss_pred HHH
Q 038490 206 ALK 208 (344)
Q Consensus 206 a~~ 208 (344)
+.+
T Consensus 404 a~~ 406 (457)
T 1kt0_A 404 RDR 406 (457)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.47 E-value=2e-06 Score=61.87 Aligned_cols=25 Identities=8% Similarity=0.066 Sum_probs=11.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHh
Q 038490 296 YNALISGFCKEEDFEAAFTILDEMG 320 (344)
Q Consensus 296 ~~~l~~~~~~~~~~~~a~~~~~~~~ 320 (344)
+..+...+...|++++|...+++..
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.47 E-value=2.7e-06 Score=61.18 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 038490 226 FASLIKGLCAVGELSLALGVKEEMV 250 (344)
Q Consensus 226 ~~~l~~~~~~~~~~~~a~~~~~~~~ 250 (344)
+..+...+...|++++|.+.+++..
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3344444444455555544444443
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.47 E-value=7.8e-07 Score=76.58 Aligned_cols=122 Identities=10% Similarity=0.017 Sum_probs=99.3
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCC
Q 038490 88 NVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRR 167 (344)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (344)
.+...+.+.|++++|++.|++..+.. +.+..++..+..++.+.|++++|...+++..+..+.+..++..+..+|...|+
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34455678899999999999999886 66789999999999999999999999999999888888999999999999999
Q ss_pred hhHHHHHHHHHhhCCCCcCHhhHHHHHHH--HHhhchHHHHHHHHH
Q 038490 168 LEDAWKVFDEMVKRRLQPTLVTFGTLIYG--LCLELRVDEALKLKE 211 (344)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 211 (344)
+++|.+.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999876322 33445455444 788899999999988
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.45 E-value=2e-06 Score=62.33 Aligned_cols=103 Identities=13% Similarity=0.041 Sum_probs=67.0
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcC------C----------CCCchhHHHHHHHHHHhcccHHHHHHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT------R----------IVPKEIIFCNVIGFYGRARLLERALQMFDEM 109 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 109 (344)
....+......+.+.|++++|+..|.+..... . .+.+...|..+..+|.+.|++++|+..++..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45678888889999999999999998877630 0 0112245555666666666666666666666
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC
Q 038490 110 SSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS 149 (344)
Q Consensus 110 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 149 (344)
++.+ +.+...|..+..++...|++++|...|++.....|
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 6654 44555666666666666666666666666655443
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.44 E-value=4.4e-06 Score=69.35 Aligned_cols=137 Identities=10% Similarity=-0.046 Sum_probs=97.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhh
Q 038490 86 FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165 (344)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (344)
+..+...+.+.|++++|++.|++.++.- +... .... .+......+.+..+|..+..+|.+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~-------~~~~~~~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAE-------DADGAKLQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSC-------HHHHGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccC-------hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555666666777777777776665421 0000 0000 1111112234567889999999999
Q ss_pred CChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 038490 166 RRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244 (344)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 244 (344)
|++++|+..+++..+.. +.+...+..+..++...|++++|...|+++++.. +.+...+..+..++...++.+++.+
T Consensus 287 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 287 SDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999874 3367788888899999999999999999988763 4467788888888888888877654
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.43 E-value=2e-06 Score=58.49 Aligned_cols=86 Identities=6% Similarity=-0.035 Sum_probs=44.6
Q ss_pred hCChhHHHHHHHHHhhCC--CCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHH
Q 038490 165 SRRLEDAWKVFDEMVKRR--LQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLA 242 (344)
Q Consensus 165 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 242 (344)
.|++++|+..|++..+.+ -+.+...+..+..++...|++++|+..++++++.. +.+...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHH
Confidence 355566666666655542 12233445555555556666666666666655442 33355555555566666666666
Q ss_pred HHHHHHHHHC
Q 038490 243 LGVKEEMVRD 252 (344)
Q Consensus 243 ~~~~~~~~~~ 252 (344)
...+++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666655554
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.43 E-value=3.9e-06 Score=60.72 Aligned_cols=99 Identities=8% Similarity=0.043 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhc--------C---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 038490 83 EIIFCNVIGFYGRARLLERALQMFDEMSSF--------N---------VQMTVKFFNTLLNPKLTCGKLDRMKELFQIME 145 (344)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 145 (344)
...+......+.+.|++++|+..|...+.. . -+.+..+|..+..+|.+.|++++|...++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 455677788888999999999999998865 1 02233567777777777788888888777777
Q ss_pred ccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhC
Q 038490 146 KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 146 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (344)
...+.+...|..+..+|...|++++|...|++....
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 776667777777777777778888887777777665
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.42 E-value=8.3e-07 Score=60.42 Aligned_cols=89 Identities=6% Similarity=-0.122 Sum_probs=57.5
Q ss_pred cCCchHHHHHHHHhhhcCC-CCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 038490 60 AKMFDEMQQILHQLKHDTR-IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138 (344)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 138 (344)
.|++++|+..|++..+... -+.+...+..+..++...|++++|+..|++..+.. +.+..++..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 5677777777777765310 02234566667777777777777777777777765 555667777777777777777777
Q ss_pred HHHHHHhccCC
Q 038490 139 ELFQIMEKYVS 149 (344)
Q Consensus 139 ~~~~~~~~~~~ 149 (344)
..+++.....+
T Consensus 82 ~~~~~al~~~p 92 (117)
T 3k9i_A 82 ELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 77777665544
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.37 E-value=8.4e-05 Score=65.25 Aligned_cols=175 Identities=7% Similarity=-0.034 Sum_probs=139.1
Q ss_pred CCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhccc----------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038490 61 KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL----------LERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130 (344)
Q Consensus 61 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 130 (344)
...++|++.++.+.... +-+..+|+.--.++...++ ++++++.++.+.+.+ +-+..+|..-..++.+
T Consensus 43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 44567899999998853 3445667766566666666 899999999999987 7788899988888888
Q ss_pred cC--ChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhC-ChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhh-------
Q 038490 131 CG--KLDRMKELFQIMEKYVSPDACSYNILIHGCVVSR-RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLE------- 200 (344)
Q Consensus 131 ~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 200 (344)
.+ +++++...++++.+..+.+..+|+.-...+.+.| .++++++.++++.+.... +...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 89 7799999999999999999999999888888889 899999999999887544 677777766665553
Q ss_pred -------chHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 038490 201 -------LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSL 241 (344)
Q Consensus 201 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 241 (344)
+.++++++.+.+++... +.+...|.-+-..+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~--P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC--SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC--CCCccHHHHHHHHHhcCCCccc
Confidence 67899999999988764 5567778777777777666443
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.30 E-value=5.4e-05 Score=66.47 Aligned_cols=175 Identities=7% Similarity=-0.032 Sum_probs=140.2
Q ss_pred ccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhccCCCCcccHHHHHHHHHhhC
Q 038490 97 RLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK----------LDRMKELFQIMEKYVSPDACSYNILIHGCVVSR 166 (344)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (344)
...++|++.++.+...+ +-+..+|+.--.++...|+ ++++...++.+....+.+..+|+.-...+.+.+
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 34478899999999887 6667788877766766666 899999999999988889999999888889999
Q ss_pred --ChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhc-hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-------
Q 038490 167 --RLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL-RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV------- 236 (344)
Q Consensus 167 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 236 (344)
+++++++.++++.+...+ +...|+.-...+.+.| .++++++.+.++++.. +-+...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhhccccccc
Confidence 679999999999988544 6777777777777788 8899999998877643 55677787776666653
Q ss_pred -------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCc
Q 038490 237 -------GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276 (344)
Q Consensus 237 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 276 (344)
+.++++.+.+++.....+. |...|..+-..+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4578899999999887655 88888888888877777554
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.24 E-value=1.9e-05 Score=56.05 Aligned_cols=60 Identities=12% Similarity=-0.021 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcc-------CCCCcccH----HHHHHHHHhhCChhHHHHHHHHHh
Q 038490 120 FFNTLLNPKLTCGKLDRMKELFQIMEKY-------VSPDACSY----NILIHGCVVSRRLEDAWKVFDEMV 179 (344)
Q Consensus 120 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~ 179 (344)
.|..+..++.+.|++++|+..+++.... .+.+...| .....++...|++++|+..|++..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444445555555555555555444443 33344444 455555555555555555555544
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.24 E-value=7.5e-06 Score=58.07 Aligned_cols=104 Identities=12% Similarity=-0.004 Sum_probs=85.8
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCc-------------hhHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPK-------------EIIFCNVIGFYGRARLLERALQMFDEMSSF 112 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 112 (344)
....+......+.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|+..+++.++.
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3455677788899999999999999998875 233 238899999999999999999999999986
Q ss_pred -------CCCCCHHHH----HHHHHHHHhcCChHHHHHHHHHHhccCCCCcc
Q 038490 113 -------NVQMTVKFF----NTLLNPKLTCGKLDRMKELFQIMEKYVSPDAC 153 (344)
Q Consensus 113 -------~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 153 (344)
+ +-+...| .....++...|++++|+..|++..+..+.+..
T Consensus 87 ~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 87 FNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred hhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 5 4456678 89999999999999999999998776554433
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=2.2e-06 Score=57.47 Aligned_cols=63 Identities=13% Similarity=0.040 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 038490 48 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF 112 (344)
Q Consensus 48 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 112 (344)
..|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|++.+++..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344444444445555555555554444431 223344444444444444555554444444443
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.20 E-value=5.8e-06 Score=67.79 Aligned_cols=147 Identities=7% Similarity=0.002 Sum_probs=70.3
Q ss_pred cHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038490 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGL 233 (344)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 233 (344)
.+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..++
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 3555666677777888888877776654 222221 223334443332221 12566667777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHH-HhccCCHHHH
Q 038490 234 CAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISG-FCKEEDFEAA 312 (344)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a 312 (344)
.+.|++++|+..+++.++.... +...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766433 6677777777777777777777777777654322 33444444433 2334556667
Q ss_pred HHHHHHHhhC
Q 038490 313 FTILDEMGDK 322 (344)
Q Consensus 313 ~~~~~~~~~~ 322 (344)
..+|.+|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7777777643
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.15 E-value=2e-05 Score=53.12 Aligned_cols=79 Identities=9% Similarity=0.045 Sum_probs=44.7
Q ss_pred HHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038490 65 EMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIM 144 (344)
Q Consensus 65 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 144 (344)
+|++.|++..+. .+.+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555555543 13344555556666666666666666666666554 444555556666666666666666666555
Q ss_pred hc
Q 038490 145 EK 146 (344)
Q Consensus 145 ~~ 146 (344)
..
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.14 E-value=3.6e-05 Score=51.87 Aligned_cols=80 Identities=8% Similarity=-0.013 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhh
Q 038490 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180 (344)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (344)
.|+..|+...+.. +.+...+..+..++...|++++|...|++.....+.+...|..+..+|...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566777777665 556778888888888888888888888888877777777888888888888888888888888765
Q ss_pred C
Q 038490 181 R 181 (344)
Q Consensus 181 ~ 181 (344)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 4
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.12 E-value=4.3e-05 Score=48.80 Aligned_cols=81 Identities=10% Similarity=0.051 Sum_probs=44.9
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLL 125 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (344)
+...|..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 34455556666666666666666666665531 2344555555666666666666666666665543 33444444444
Q ss_pred HHHH
Q 038490 126 NPKL 129 (344)
Q Consensus 126 ~~~~ 129 (344)
.++.
T Consensus 85 ~~~~ 88 (91)
T 1na3_A 85 NAKQ 88 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.08 E-value=6.1e-05 Score=48.03 Aligned_cols=84 Identities=13% Similarity=0.097 Sum_probs=72.7
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHH
Q 038490 82 KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161 (344)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 161 (344)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.....+.+...+..+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 35677888899999999999999999999876 56788899999999999999999999999988877777888888777
Q ss_pred HHhhC
Q 038490 162 CVVSR 166 (344)
Q Consensus 162 ~~~~~ 166 (344)
+.+.|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 76554
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.07 E-value=1.4e-05 Score=56.62 Aligned_cols=99 Identities=10% Similarity=0.035 Sum_probs=71.0
Q ss_pred HHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038490 197 LCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL----------SLALGVKEEMVRDKIEMDAGIYSSLIS 266 (344)
Q Consensus 197 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~ 266 (344)
..+.+.+++|.+.++..++.. +.+...|..+..++...+++ ++|+..|++.++.++. +...|..+..
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ 88 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 356678888888888877764 55677787777777777664 4888888888887655 6778888888
Q ss_pred HHHHcC-----------CcCcHHHHHHHHHHcCCCCChhhHHHHH
Q 038490 267 ALFKAG-----------RKNEFPAILKEMKERGCKPNSVTYNALI 300 (344)
Q Consensus 267 ~~~~~g-----------~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 300 (344)
+|...| ++++|+..|++..+. .|+...|...+
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 887764 677777777777775 45555444433
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.07 E-value=6.6e-05 Score=49.96 Aligned_cols=94 Identities=12% Similarity=0.015 Sum_probs=61.3
Q ss_pred CHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------HH
Q 038490 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD------AG 259 (344)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~ 259 (344)
+...+..+...+...|++++|+..+++.++.. +.+...+..+..++.+.|++++|...+++..+..+. + ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHH
Confidence 34455566667777777777777777776653 345666777777777777777777777777765433 2 44
Q ss_pred HHHHHHHHHHHcCCcCcHHHHHH
Q 038490 260 IYSSLISALFKAGRKNEFPAILK 282 (344)
Q Consensus 260 ~~~~l~~~~~~~g~~~~a~~~~~ 282 (344)
.+..+..++...|+.+.|...++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 55556666666666666554443
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.07 E-value=2.4e-05 Score=67.11 Aligned_cols=124 Identities=10% Similarity=0.052 Sum_probs=53.4
Q ss_pred HhhCChhHHHHHHHHHhhC-----C-CCc-CHhhHHHHHHHHHhhchHHHHHHHHHHHHHhc----C-CCCC-HHHHHHH
Q 038490 163 VVSRRLEDAWKVFDEMVKR-----R-LQP-TLVTFGTLIYGLCLELRVDEALKLKEDIMRVY----N-VKPD-GQVFASL 229 (344)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~-~~~~~~l 229 (344)
...|++++|+.++++.++. | -.| ...+++.+..+|...|++++|..++++.+.-. | -.|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455555555555554331 0 011 12344555555555555555555555443211 1 1111 2344555
Q ss_pred HHHHHhcCChHHHHHHHHHHHH-----CCCC--CCHHHHHHHHHHHHHcCCcCcHHHHHHHHHH
Q 038490 230 IKGLCAVGELSLALGVKEEMVR-----DKIE--MDAGIYSSLISALFKAGRKNEFPAILKEMKE 286 (344)
Q Consensus 230 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 286 (344)
...|...|++++|+.++++..+ .|.. ....+.+.+..++...+.+++|+.++.++++
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554432 1211 0112233344444444455555555554443
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.05 E-value=2.2e-05 Score=55.54 Aligned_cols=94 Identities=13% Similarity=0.049 Sum_probs=49.3
Q ss_pred hcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038490 95 RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGK----------LDRMKELFQIMEKYVSPDACSYNILIHGCVV 164 (344)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (344)
+.+.+++|.+.++...+.. +.+...|..+..++...++ +++|+..|++..+..+....+|..+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3444455555555555444 4444455544444444443 3356666666555555555556666666555
Q ss_pred hC-----------ChhHHHHHHHHHhhCCCCcCHhhHH
Q 038490 165 SR-----------RLEDAWKVFDEMVKRRLQPTLVTFG 191 (344)
Q Consensus 165 ~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~ 191 (344)
.| ++++|++.|++..+. .|+...|.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~ 128 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL 128 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHH
Confidence 43 566666666666554 34444443
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.05 E-value=0.00023 Score=49.72 Aligned_cols=110 Identities=7% Similarity=-0.113 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCcCcH
Q 038490 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK----AGRKNEF 277 (344)
Q Consensus 202 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 277 (344)
++++|+..|++..+. + .+... +...|...+..++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 445555555554432 1 22221 3334444444555555555555543 44455555555555 4555555
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHhhCC
Q 038490 278 PAILKEMKERGCKPNSVTYNALISGFCK----EEDFEAAFTILDEMGDKG 323 (344)
Q Consensus 278 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 323 (344)
...|++..+.| +...+..|...|.. .++.++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55555555543 34445555555555 556666666666665554
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.05 E-value=6.2e-05 Score=64.57 Aligned_cols=87 Identities=5% Similarity=-0.118 Sum_probs=42.9
Q ss_pred HHhcccHHHHHHHHHHHHhc-----C--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcc-----CC--C-CcccHHH
Q 038490 93 YGRARLLERALQMFDEMSSF-----N--VQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY-----VS--P-DACSYNI 157 (344)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~-~~~~~~~ 157 (344)
+..+|++++|+.++++.++. | -+....+++.|..+|...|++++|..++++.... |+ | ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33556666666666555431 1 0112345555556666666666665555544321 11 1 1234455
Q ss_pred HHHHHHhhCChhHHHHHHHHHh
Q 038490 158 LIHGCVVSRRLEDAWKVFDEMV 179 (344)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~ 179 (344)
|...|...|++++|+.++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555555543
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.00 E-value=0.00035 Score=48.80 Aligned_cols=15 Identities=0% Similarity=-0.017 Sum_probs=5.8
Q ss_pred CCcCcHHHHHHHHHH
Q 038490 272 GRKNEFPAILKEMKE 286 (344)
Q Consensus 272 g~~~~a~~~~~~~~~ 286 (344)
++.++|...|++..+
T Consensus 111 ~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 111 KNEKQAVKTFEKACR 125 (138)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 333333333333333
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.97 E-value=5e-05 Score=49.74 Aligned_cols=64 Identities=6% Similarity=0.039 Sum_probs=34.3
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS 111 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 111 (344)
+..+|..+..++.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555555555555555555555555555432 22344555555555555555555555555543
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.83 E-value=0.0001 Score=48.18 Aligned_cols=63 Identities=16% Similarity=0.066 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHh
Q 038490 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179 (344)
Q Consensus 117 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (344)
+...+..+..++...|++++|...|++..+..+.+...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555555555555555555555555544444555555555555555555555555543
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.71 E-value=0.0028 Score=51.58 Aligned_cols=73 Identities=11% Similarity=-0.018 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhH
Q 038490 220 KPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTY 296 (344)
Q Consensus 220 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 296 (344)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.... .|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 4455666665555555566666666666666654 45555656666666666666666666666655 3444444
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.58 E-value=0.0043 Score=50.48 Aligned_cols=133 Identities=8% Similarity=0.019 Sum_probs=61.8
Q ss_pred CCchhHHHHHHHHHHh-----cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---C--ChHHH---HHHHHHHh-
Q 038490 80 VPKEIIFCNVIGFYGR-----ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC---G--KLDRM---KELFQIME- 145 (344)
Q Consensus 80 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~--~~~~a---~~~~~~~~- 145 (344)
+.+...|...+++... ..+..+|..+|++..+.. |-....+..+..+|... + ..... ...++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 4556666666655432 234577888888888775 44455555544444310 0 00000 01111110
Q ss_pred -ccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 038490 146 -KYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMR 215 (344)
Q Consensus 146 -~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 215 (344)
...+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|...+.+.++
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1122344444444444444455555555555555442 3444444444444455555555555555444
No 211
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.51 E-value=0.0037 Score=48.80 Aligned_cols=97 Identities=19% Similarity=0.168 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCcC
Q 038490 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAV-----GELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA-GRKN 275 (344)
Q Consensus 202 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~ 275 (344)
....|...++++++...--.+...|..+...|.+. |+.++|.+.|++.++.++.-+..++......++.. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 45667777777666531111356777777777774 88888888888888875543477777777777774 8888
Q ss_pred cHHHHHHHHHHcCCC--CChhhHHH
Q 038490 276 EFPAILKEMKERGCK--PNSVTYNA 298 (344)
Q Consensus 276 ~a~~~~~~~~~~~~~--p~~~~~~~ 298 (344)
++.+.+++....... |+....+.
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHH
Confidence 888888888877655 55444443
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.49 E-value=0.0077 Score=55.49 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=22.8
Q ss_pred HhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHH
Q 038490 129 LTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEM 178 (344)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 178 (344)
...|+++.|.++.+.+ .+...|..+...+.+.|+++.|++.|.++
T Consensus 663 l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555544322 23445555555555555555555555544
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.42 E-value=0.00033 Score=45.46 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=38.1
Q ss_pred HHHHHHhcCCchHHHHHHHHhhhcCCCCCchh-HHHHHHHHHHhcccHHHHHHHHHHHHhcC
Q 038490 53 IITKLGRAKMFDEMQQILHQLKHDTRIVPKEI-IFCNVIGFYGRARLLERALQMFDEMSSFN 113 (344)
Q Consensus 53 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 113 (344)
....+.+.|++++|...|++..+.. +.+.. .+..+..++...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3455666677777777777766642 33445 66666667777777777777777776654
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.37 E-value=0.0028 Score=40.90 Aligned_cols=66 Identities=14% Similarity=0.059 Sum_probs=51.7
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccH
Q 038490 89 VIGFYGRARLLERALQMFDEMSSFNVQMTVK-FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSY 155 (344)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (344)
....+...|++++|.+.|+...+.. +.+.. .+..+..++...|++++|...|++.....+.+...+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4556778888999999998888875 55667 888888888888999999999988887766555444
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.24 E-value=0.0077 Score=38.47 Aligned_cols=20 Identities=5% Similarity=-0.164 Sum_probs=7.6
Q ss_pred HHHHhcccHHHHHHHHHHHH
Q 038490 91 GFYGRARLLERALQMFDEMS 110 (344)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~ 110 (344)
..+.+.|++++|+..|+.+.
T Consensus 51 ~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 51 NDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 33333333333333333333
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.14 E-value=0.0068 Score=38.74 Aligned_cols=66 Identities=11% Similarity=0.134 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhC
Q 038490 116 MTVKFFNTLLNPKLTCGK---LDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 116 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (344)
.+...+..+..++...++ .++|..++++.....+.+..+...+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344445555554443333 455555555555555555555555555555566666666666655554
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.11 E-value=0.0012 Score=55.78 Aligned_cols=87 Identities=10% Similarity=-0.094 Sum_probs=65.3
Q ss_pred hcCChHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc-----CC-CCC-hhhHHHHH
Q 038490 235 AVGELSLALGVKEEMVRD---KIEM----DAGIYSSLISALFKAGRKNEFPAILKEMKER-----GC-KPN-SVTYNALI 300 (344)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~-~~~~~~l~ 300 (344)
..|++++|+.++++.++. -..| ...+++.|..+|...|++++|+.++++..+. |. .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999998887652 1112 2467888999999999999999999887543 32 222 34588888
Q ss_pred HHHhccCCHHHHHHHHHHHhh
Q 038490 301 SGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 301 ~~~~~~~~~~~a~~~~~~~~~ 321 (344)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998863
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.10 E-value=0.0032 Score=53.14 Aligned_cols=87 Identities=10% Similarity=-0.001 Sum_probs=43.3
Q ss_pred hhchHHHHHHHHHHHHHhc--CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCC-C-CHHHHHHHH
Q 038490 199 LELRVDEALKLKEDIMRVY--NVKP----DGQVFASLIKGLCAVGELSLALGVKEEMVRD-----KIE-M-DAGIYSSLI 265 (344)
Q Consensus 199 ~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~ 265 (344)
+.|++++|+.++++.+... -+.| ...+++.+...|...|++++|+.++++.+.. |.. | ...+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 3455555555555554321 1111 1334555555566666666666655555421 111 1 223455556
Q ss_pred HHHHHcCCcCcHHHHHHHHH
Q 038490 266 SALFKAGRKNEFPAILKEMK 285 (344)
Q Consensus 266 ~~~~~~g~~~~a~~~~~~~~ 285 (344)
..|...|++++|+.++++..
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 66666666666666665543
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.09 E-value=0.0025 Score=53.79 Aligned_cols=86 Identities=12% Similarity=0.011 Sum_probs=44.4
Q ss_pred chHHHHHHHHHHHHHhc--CCCC---C-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCC-C-CHHHHHHHHHH
Q 038490 201 LRVDEALKLKEDIMRVY--NVKP---D-GQVFASLIKGLCAVGELSLALGVKEEMVRD-----KIE-M-DAGIYSSLISA 267 (344)
Q Consensus 201 ~~~~~a~~~~~~~~~~~--~~~~---~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~ 267 (344)
|++++|+.++++.++.. -+.| + ..+++.+..+|...|++++|+.++++.++. |.. | ...+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 35555555555544321 1112 1 345566666666666666666666655431 211 1 23345666666
Q ss_pred HHHcCCcCcHHHHHHHHHH
Q 038490 268 LFKAGRKNEFPAILKEMKE 286 (344)
Q Consensus 268 ~~~~g~~~~a~~~~~~~~~ 286 (344)
|...|++++|+.++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 6666666666666665543
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.08 E-value=0.0031 Score=53.28 Aligned_cols=92 Identities=15% Similarity=0.042 Sum_probs=71.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc-----CC-CCC-hhh
Q 038490 230 IKGLCAVGELSLALGVKEEMVRDK---IEM----DAGIYSSLISALFKAGRKNEFPAILKEMKER-----GC-KPN-SVT 295 (344)
Q Consensus 230 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~-~~~ 295 (344)
+..+.+.|++++|+.++++..+.. ..| ...+++.|..+|...|++++|+.++++.... |. .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667899999999999998641 112 2457889999999999999999999987643 21 222 345
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhh
Q 038490 296 YNALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 296 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999998863
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.042 Score=39.47 Aligned_cols=102 Identities=13% Similarity=0.131 Sum_probs=59.9
Q ss_pred HHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 038490 55 TKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL 134 (344)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 134 (344)
....+.|+++.|.++.+.+ .+...|..|.......|+++-|++.|..... +..+.-.|.-.|+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 3455667777777766554 1455677777777777777777777766553 34455555556666
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHH
Q 038490 135 DRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDE 177 (344)
Q Consensus 135 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 177 (344)
+....+-+..... .-++.....+...|+++++.++|.+
T Consensus 77 e~L~kla~iA~~~-----g~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 77 NKLSKMQNIAQTR-----EDFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHT-----TCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-----ccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555444443322 2345555556666777777776644
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.96 E-value=0.015 Score=37.99 Aligned_cols=63 Identities=16% Similarity=0.035 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038490 190 FGTLIYGLCLELRVDEALKLKEDIMRVYN-----VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252 (344)
Q Consensus 190 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (344)
+..+...+.+.+++..|...++.+++... -.+...++..+..++.+.|+++.|...+++..+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445555555555555555555544321 1122344555555555555555555555555544
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.91 E-value=0.012 Score=38.47 Aligned_cols=68 Identities=7% Similarity=-0.055 Sum_probs=47.1
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHHhhhcC-----CCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Q 038490 46 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT-----RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFN 113 (344)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 113 (344)
+..-+..+...+.+.|+++.|..+|+...+.. +-.+...++..+..++.+.|+++.|...++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 44556677788888888888888887766531 012345667777777777888888888877777654
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.91 E-value=2.8e-06 Score=70.47 Aligned_cols=242 Identities=12% Similarity=0.109 Sum_probs=121.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038490 49 HYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK 128 (344)
Q Consensus 49 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 128 (344)
+|..+..+..+.+++.+|++-|-+ .-|+..|..++....+.|.+++-.+.+...++.. .++.+=+.|+-+|
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIk-------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCC-------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHh-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 455556666666655555543311 1233445556666666666666555555444332 2222334555566
Q ss_pred HhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhC--------------------CCCcCHh
Q 038490 129 LTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR--------------------RLQPTLV 188 (344)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~~~ 188 (344)
++.++..+.++++ ..|+..-...+.+-|...|.++.|.-+|..+... .-.-++.
T Consensus 127 Ak~~rL~elEefl------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 127 AKTNRLAELEEFI------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp HTSCSSSTTTSTT------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred HhhCcHHHHHHHH------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 6655543322211 0144444444555555555555444444332110 0012566
Q ss_pred hHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038490 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISAL 268 (344)
Q Consensus 189 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 268 (344)
||..+-.+|...+.+.-|-..--.++-. ++ -...++..|-..|-+++.+.+++.-.... .....+|+-|.-.|
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIvh----ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILY 273 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVVH----AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 273 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHCC----SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhccc----HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHH
Confidence 7777777777777766554433332211 11 12234556677777887777777766432 34677777777777
Q ss_pred HHcCCcCcHHHHHHHHHHc-CCC------CChhhHHHHHHHHhccCCHHHHH
Q 038490 269 FKAGRKNEFPAILKEMKER-GCK------PNSVTYNALISGFCKEEDFEAAF 313 (344)
Q Consensus 269 ~~~g~~~~a~~~~~~~~~~-~~~------p~~~~~~~l~~~~~~~~~~~~a~ 313 (344)
++- ++++..+.++..-.+ +++ -....|..++-.|.+-.+++.|.
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 765 355554444432111 110 02334555666666666665543
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.89 E-value=0.022 Score=39.46 Aligned_cols=115 Identities=11% Similarity=0.034 Sum_probs=79.5
Q ss_pred CcchhhHHHHHHHHHhcCCc------hHHHHHHHHhhhcCCCCCchhH-HHHHHH------HHHhcccHHHHHHHHHHHH
Q 038490 44 RYNLLHYDLIITKLGRAKMF------DEMQQILHQLKHDTRIVPKEII-FCNVIG------FYGRARLLERALQMFDEMS 110 (344)
Q Consensus 44 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~-~~~l~~------~~~~~~~~~~a~~~~~~~~ 110 (344)
+.|..+|-..+...-+.|+. ++.+++|++.... ++|+... +..-+. .+...++.++|.++|+.++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44888999999999888999 8999999998875 6775421 111111 1123477888888888887
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHH
Q 038490 111 SFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161 (344)
Q Consensus 111 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 161 (344)
+.+ +--..+|....+.-.+.|++..|.+++......++.+.....+.++-
T Consensus 88 ~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~n 137 (161)
T 4h7y_A 88 ANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRN 137 (161)
T ss_dssp HHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHH
T ss_pred HHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 653 33367777777777788888888888888877666555555544443
No 226
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.13 Score=43.63 Aligned_cols=252 Identities=12% Similarity=0.101 Sum_probs=141.7
Q ss_pred cCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhH--HHHHHHH
Q 038490 15 QKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEII--FCNVIGF 92 (344)
Q Consensus 15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~ 92 (344)
.|+++.|++.+..+.+.... .............++..|...|+++...+.+..+.+..|..+...+ ...++..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~-----~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~ 103 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQ-----ASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEY 103 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSS-----SCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhh-----ccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 36788888777554221100 1223446777888999999999999998888777665443332221 1222222
Q ss_pred HHhcccHH--HHHHHHHHHHh--cC-CCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC--CC----cccHHHH
Q 038490 93 YGRARLLE--RALQMFDEMSS--FN-VQM---TVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PD----ACSYNIL 158 (344)
Q Consensus 93 ~~~~~~~~--~a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~l 158 (344)
.......+ .-..+.+.+.. .| +-. .......|...+...|++.+|..++..+..... .+ ...+...
T Consensus 104 l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q 183 (445)
T 4b4t_P 104 LKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQ 183 (445)
T ss_dssp HHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred HhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 22222222 12222222211 11 111 223456778888999999999999988753211 11 3456677
Q ss_pred HHHHHhhCChhHHHHHHHHHhh----CCCCcCH--hhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHH---
Q 038490 159 IHGCVVSRRLEDAWKVFDEMVK----RRLQPTL--VTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL--- 229 (344)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--- 229 (344)
++.|...+++.+|..++.++.. ....|+. ..+...+..+...+++.+|.+.|.++........+...+..+
T Consensus 184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~ 263 (445)
T 4b4t_P 184 MELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSH 263 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 8889999999999999888642 2222222 344556667777889999998888877654444444322222
Q ss_pred -HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 038490 230 -IKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKA 271 (344)
Q Consensus 230 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 271 (344)
+.+..-.+....-..++.........++...|..++.+|...
T Consensus 264 ~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~ 306 (445)
T 4b4t_P 264 IVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTN 306 (445)
T ss_dssp HHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhc
Confidence 212222222222223333333322234667788888887653
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.77 E-value=0.012 Score=41.27 Aligned_cols=85 Identities=7% Similarity=-0.065 Sum_probs=53.1
Q ss_pred chHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCcCc
Q 038490 201 LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVG---ELSLALGVKEEMVRDK-IEMDAGIYSSLISALFKAGRKNE 276 (344)
Q Consensus 201 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 276 (344)
.....+.+.|.+..+.. +++..+...+..++.+.+ +.++++.+++...+.+ +.-+...+-.|.-+|.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 44556666666654432 356666666666777766 4557777777777654 11134455556666777777777
Q ss_pred HHHHHHHHHHc
Q 038490 277 FPAILKEMKER 287 (344)
Q Consensus 277 a~~~~~~~~~~ 287 (344)
|.+.++.+.+.
T Consensus 90 A~~y~~~lL~i 100 (152)
T 1pc2_A 90 ALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 77777777765
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.09 Score=37.78 Aligned_cols=102 Identities=14% Similarity=0.175 Sum_probs=68.8
Q ss_pred HHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhH
Q 038490 91 GFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLED 170 (344)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 170 (344)
....+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHH
Confidence 3345678888887776655 3466788888888888888888888877753 5666666777777777
Q ss_pred HHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHH
Q 038490 171 AWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 212 (344)
Q Consensus 171 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 212 (344)
..++-+....+| -++.....+...|+++++.+++.+
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666655554443 134445556667788888777755
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.73 E-value=0.019 Score=40.14 Aligned_cols=81 Identities=10% Similarity=-0.037 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHhccCCC--CcccHHHHHHHHHhhCChhHHHHH
Q 038490 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCG---KLDRMKELFQIMEKYVSP--DACSYNILIHGCVVSRRLEDAWKV 174 (344)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 174 (344)
..+.+-|.+..+.| +++..+...+..++++.+ +.+++..+++.+.+...| ....+..+.-+|.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 33444444444444 345555555555555544 344555555555444311 233444444455555555555555
Q ss_pred HHHHhhC
Q 038490 175 FDEMVKR 181 (344)
Q Consensus 175 ~~~~~~~ 181 (344)
++.+.+.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 5555543
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.67 E-value=0.052 Score=49.98 Aligned_cols=131 Identities=10% Similarity=0.067 Sum_probs=89.7
Q ss_pred hhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhH
Q 038490 6 IRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEII 85 (344)
Q Consensus 6 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 85 (344)
..++..+.+.|.+++|+++.+.. .. -.......|++++|.++.+.+ .+...
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~-----------------~~-----~f~~~l~~~~~~~A~~~~~~~-------~~~~~ 683 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ-----------------DQ-----KFELALKVGQLTLARDLLTDE-------SAEMK 683 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH-----------------HH-----HHHHHHHHTCHHHHHHHHTTC-------CCHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc-----------------ch-----heehhhhcCCHHHHHHHHHhh-------CcHhH
Confidence 34556667788888888777432 11 134467789999999986443 35678
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhh
Q 038490 86 FCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVS 165 (344)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (344)
|..+...+.+.++++.|++.|..+.. |..+...+...|+.+....+-+.....+ -++....+|.+.
T Consensus 684 W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~-----~~~~A~~~~~~~ 749 (814)
T 3mkq_A 684 WRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG-----KFNLAFNAYWIA 749 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC-----chHHHHHHHHHc
Confidence 99999999999999999999998764 4455555666777766665555554322 334445556667
Q ss_pred CChhHHHHHHHHHh
Q 038490 166 RRLEDAWKVFDEMV 179 (344)
Q Consensus 166 ~~~~~a~~~~~~~~ 179 (344)
|++++|++++.++.
T Consensus 750 g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 750 GDIQGAKDLLIKSQ 763 (814)
T ss_dssp TCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHcC
Confidence 77777777776653
No 231
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.45 E-value=0.56 Score=43.39 Aligned_cols=315 Identities=9% Similarity=-0.018 Sum_probs=164.0
Q ss_pred hcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCC-CCC---chhH--
Q 038490 12 PRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-IVP---KEII-- 85 (344)
Q Consensus 12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~---~~~~-- 85 (344)
....|+.++++.+++....... ...+....-..+.-+....|..+++..++........ +.- +...
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~--------s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~ 455 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSR--------ASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLH 455 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSC--------CSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccC--------CCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHH
Confidence 4456888889999988644210 1112334444455556677776778887777654321 000 1111
Q ss_pred HHH--HHHHHHhcccHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHH
Q 038490 86 FCN--VIGFYGRARLLERALQMFDEMSSFNVQMTVK--FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHG 161 (344)
Q Consensus 86 ~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 161 (344)
-.. |.-+|.-.++ +++...+..+.... .+... .--.|...+.-.|+-+....++..+.+....+..-...+.-+
T Consensus 456 gAaLGLGla~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLG 533 (963)
T 4ady_A 456 GASLGIGLAAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLA 533 (963)
T ss_dssp HHHHHHHHHSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 111 2222222333 34555555555432 11111 112333345566777777777777665322222222333444
Q ss_pred HHhhCChhHHHHHHHHHhhCCCCcCHhhHH--HHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 038490 162 CVVSRRLEDAWKVFDEMVKRRLQPTLVTFG--TLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGEL 239 (344)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 239 (344)
+...|+.+.+..+++.+... ..|....-. ++..+|+..|+.....+++..+... ...++.....+.-++...|+.
T Consensus 534 ll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 534 LINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp HHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSC
T ss_pred hhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCH
Confidence 55778999999998888765 222222221 2344677888987777788886542 122333333333344456777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCc-CcHHHHHHHHHHcCCCCChhhHHHHHHHH--hccC-------CH
Q 038490 240 SLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRK-NEFPAILKEMKERGCKPNSVTYNALISGF--CKEE-------DF 309 (344)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~~-------~~ 309 (344)
+.+.++++.+.+.+ .|.+.--..+.-+....|.. .++.+++..+... +|..+-...+.++ .-.| ++
T Consensus 611 e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rv 686 (963)
T 4ady_A 611 TTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQV 686 (963)
T ss_dssp SSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTH
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHH
Confidence 77777776666543 44555445555566666665 4788888888753 3444433333333 2222 33
Q ss_pred HHHHHHHHHHhhC-CCCCChhhHHHHHHHHhhcCC
Q 038490 310 EAAFTILDEMGDK-GCKANPISYNVILGGLCKDGK 343 (344)
Q Consensus 310 ~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~g~ 343 (344)
...++.+...... .-.++...-..+..+....|+
T Consensus 687 a~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 687 ADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 4444444444332 223445555555566665553
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.41 E-value=0.12 Score=35.15 Aligned_cols=139 Identities=12% Similarity=0.103 Sum_probs=91.7
Q ss_pred hcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHH
Q 038490 95 RARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKV 174 (344)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 174 (344)
-.|.+++..++..+.... .+..-+|-+|--....-+-+...++++.+-... |. ..+|++......
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF--Di----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF--DL----------DKCQNLKSVVEC 83 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS--CG----------GGCSCTHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhc--Cc----------HhhhcHHHHHHH
Confidence 457777888888777763 345556666665555666666666666654432 22 123444444444
Q ss_pred HHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 038490 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI 254 (344)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 254 (344)
+-.+- -+...+...+..+...|+-++-.+++..++. ..+|++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 43331 2445566677777888888888888877544 4477788888888888888988888888888888876
Q ss_pred C
Q 038490 255 E 255 (344)
Q Consensus 255 ~ 255 (344)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 5
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.30 E-value=0.058 Score=42.23 Aligned_cols=97 Identities=8% Similarity=0.016 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHc-----CCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhc-cCCHHH
Q 038490 239 LSLALGVKEEMVRDKIEM-DAGIYSSLISALFKA-----GRKNEFPAILKEMKERGCKPNSVTYNALISGFCK-EEDFEA 311 (344)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~ 311 (344)
...|...+++..+..+.. +...|..+...|... |+.++|.+.|++..+.+..-+..++......++. .|+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 467778888888764321 256889999999994 9999999999999998543347778888888888 499999
Q ss_pred HHHHHHHHhhCCCC--CChhhHHHHH
Q 038490 312 AFTILDEMGDKGCK--ANPISYNVIL 335 (344)
Q Consensus 312 a~~~~~~~~~~~~~--p~~~~~~~ll 335 (344)
+.+.+++....... |+....+.+-
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 99999999987666 6665555543
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.29 E-value=0.089 Score=36.45 Aligned_cols=53 Identities=6% Similarity=0.025 Sum_probs=28.0
Q ss_pred CCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC
Q 038490 272 GRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCK 325 (344)
Q Consensus 272 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 325 (344)
+++++|.++|+.++..+-+- ...|.....--.++|++..|.+++.+.+..+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 56666666666665442222 334444444445566666666666666654433
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.09 E-value=0.7 Score=42.78 Aligned_cols=260 Identities=10% Similarity=-0.055 Sum_probs=132.8
Q ss_pred HHHhcCCchHHHHHHHHhhhcCCCCCchhHHH--HHHHHHHhcccHHHHHHHHHHHHhcCC-------CCCHHHHHHHHH
Q 038490 56 KLGRAKMFDEMQQILHQLKHDTRIVPKEIIFC--NVIGFYGRARLLERALQMFDEMSSFNV-------QMTVKFFNTLLN 126 (344)
Q Consensus 56 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~ 126 (344)
+....|+.++++.++....... ...+..+-. .+.-+....|...++..++.......- .+....-..+.-
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~-~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGS-RASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTS-CCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhcccc-CCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 4566788888888777655421 012222222 222333444544567776666554320 011222222222
Q ss_pred HHHhcCC-hHHHHHHHHHHhccCCCCcccHH--HHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchH
Q 038490 127 PKLTCGK-LDRMKELFQIMEKYVSPDACSYN--ILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRV 203 (344)
Q Consensus 127 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 203 (344)
+.+-.|. -+++...+..+............ ++...+.-.|+-+....++..+.+.. .-+..-...+.-++...|+.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 3332332 23444444444332111111122 22333445677777777777766542 21222222233344467888
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHH
Q 038490 204 DEALKLKEDIMRVYNVKPDGQVFA--SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAIL 281 (344)
Q Consensus 204 ~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 281 (344)
+.+..+.+.+... ..|....-. ++.-+|+..|+.....+++..+..... .++.-...+.-++...|+.+.+.+++
T Consensus 541 e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~-d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 541 ELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSN-DDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCc-HHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 8888887775442 123222222 333456788898877778888887532 24444444445556678888888888
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhccCCH-HHHHHHHHHHhh
Q 038490 282 KEMKERGCKPNSVTYNALISGFCKEEDF-EAAFTILDEMGD 321 (344)
Q Consensus 282 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 321 (344)
+.+.+.+ .|.++.-..+.-+....|.. .++..++..+..
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7666543 34444444444444444443 567778887764
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.71 E-value=0.17 Score=34.04 Aligned_cols=80 Identities=11% Similarity=-0.065 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHhccCCC--CcccHHHHHHHHHhhCChhHHHHH
Q 038490 100 ERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDR---MKELFQIMEKYVSP--DACSYNILIHGCVVSRRLEDAWKV 174 (344)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 174 (344)
..+.+-|......| .++..+-..+..++.+..+... +..+++.+...+.| .......+.-++.+.|++++|.+.
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33344444333333 2444444444444444443332 44444444333211 222223333444444444444444
Q ss_pred HHHHhh
Q 038490 175 FDEMVK 180 (344)
Q Consensus 175 ~~~~~~ 180 (344)
++.+++
T Consensus 97 ~~~lL~ 102 (126)
T 1nzn_A 97 VRGLLQ 102 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.47 E-value=0.15 Score=34.23 Aligned_cols=80 Identities=15% Similarity=0.088 Sum_probs=36.5
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhH---HHHHHHHHhhCCCCc--CHhhHHHHHHHHHhhchHHHHHHHH
Q 038490 136 RMKELFQIMEKYVSPDACSYNILIHGCVVSRRLED---AWKVFDEMVKRRLQP--TLVTFGTLIYGLCLELRVDEALKLK 210 (344)
Q Consensus 136 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~ 210 (344)
.+.+-|......+.++..+-..+..+++++++... ++.+++++...+ .| .....-.+.-++.+.|++++|.+.+
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444444333344555555555555555554433 555555555442 11 1111112333455555555555555
Q ss_pred HHHHHh
Q 038490 211 EDIMRV 216 (344)
Q Consensus 211 ~~~~~~ 216 (344)
+.+++.
T Consensus 98 ~~lL~~ 103 (126)
T 1nzn_A 98 RGLLQT 103 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555543
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.39 E-value=1.1 Score=38.02 Aligned_cols=257 Identities=9% Similarity=0.066 Sum_probs=150.1
Q ss_pred cCCchHHHHHHHHhhhcC----CCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----Hhc
Q 038490 60 AKMFDEMQQILHQLKHDT----RIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPK----LTC 131 (344)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 131 (344)
.|+++.|++.+..+.+.. ...........++..|...++++...+.+..+.+..-.. ......+++.+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 378889988887766431 234456678889999999999999988887766432122 22233444333 223
Q ss_pred CChHH--HHHHHHHHhccCCCCcc---------cHHHHHHHHHhhCChhHHHHHHHHHhhC--CCCcC---HhhHHHHHH
Q 038490 132 GKLDR--MKELFQIMEKYVSPDAC---------SYNILIHGCVVSRRLEDAWKVFDEMVKR--RLQPT---LVTFGTLIY 195 (344)
Q Consensus 132 ~~~~~--a~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~ 195 (344)
...+. -..+.+.+... .... ....|...|...|++.+|..++..+... |.... ...+...++
T Consensus 108 ~~~d~~~~~~~i~~l~~v--te~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVV--TENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHHHHHHHCCSSS--SSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33222 12222222111 1111 2256778889999999999999998643 32222 235666678
Q ss_pred HHHhhchHHHHHHHHHHHHHh-cCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHH----HHH
Q 038490 196 GLCLELRVDEALKLKEDIMRV-YNVKPD----GQVFASLIKGLCAVGELSLALGVKEEMVRD-KIEMDAGIYS----SLI 265 (344)
Q Consensus 196 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~ 265 (344)
.|...+++.+|..++.++... ....++ ...+...+..+...+++.+|...|.++... ...-+...+. .++
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v 265 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIV 265 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 888999999999999886321 112222 234566677778889999888888777642 1111332222 222
Q ss_pred HHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhcc--CCHHHHHHHHHHH
Q 038490 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE--EDFEAAFTILDEM 319 (344)
Q Consensus 266 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~ 319 (344)
.+..-.+....-..++........-++...|..++.+|... .+++.+.+.|+..
T Consensus 266 ~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 266 YFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 22233333344444555444433334677788888888654 4566666655443
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.37 Score=43.57 Aligned_cols=127 Identities=13% Similarity=0.075 Sum_probs=83.9
Q ss_pred HHHHHHHHHhcCC-chHHHHHHHHhhhcCCCCCchhHHH--HHHHHHHhcc-cHHHHHHHHHHHHhc------CCCC-CH
Q 038490 50 YDLIITKLGRAKM-FDEMQQILHQLKHDTRIVPKEIIFC--NVIGFYGRAR-LLERALQMFDEMSSF------NVQM-TV 118 (344)
Q Consensus 50 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~ 118 (344)
-..++..+...++ .+.|..+|+++... .|...++. .++..+...+ +--+|.+++.+..+. ..++ +.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 3456666666666 58899999999875 35433322 3333333332 233455555544321 1111 21
Q ss_pred H----------HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHh
Q 038490 119 K----------FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMV 179 (344)
Q Consensus 119 ~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (344)
. ....=...+...|+++.|+.+-++.....|.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1 111223345678999999999999998888889999999999999999999999998873
No 240
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.09 E-value=0.48 Score=32.24 Aligned_cols=145 Identities=12% Similarity=0.066 Sum_probs=81.9
Q ss_pred HHHHHHH--HHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038490 50 YDLIITK--LGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127 (344)
Q Consensus 50 ~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (344)
...|+.+ +.-.|..++..++..+..... +..-+|-+|.-....-+-+-..++++.+-+. -|.
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi--------- 71 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL--------- 71 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG---------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhhh---cCc---------
Confidence 3444443 455688999999998887753 4444555665555555666555555554321 111
Q ss_pred HHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHH
Q 038490 128 KLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEAL 207 (344)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 207 (344)
..+|++......+-.+- .+....+..+......|.-++-.+++..+... .+|++.....+..+|.+.|+..++.
T Consensus 72 -s~C~NlKrVi~C~~~~n----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~ 145 (172)
T 1wy6_A 72 -DKCQNLKSVVECGVINN----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDAT 145 (172)
T ss_dssp -GGCSCTHHHHHHHHHTT----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -HhhhcHHHHHHHHHHhc----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHH
Confidence 12333433333333332 34445555566666666666666666664432 3455566666666666677766666
Q ss_pred HHHHHHHHh
Q 038490 208 KLKEDIMRV 216 (344)
Q Consensus 208 ~~~~~~~~~ 216 (344)
+++.++.+.
T Consensus 146 eLl~~AC~k 154 (172)
T 1wy6_A 146 TLLIEACKK 154 (172)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 666665543
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.08 E-value=1.1 Score=43.06 Aligned_cols=144 Identities=11% Similarity=0.097 Sum_probs=84.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhc----C--------------
Q 038490 52 LIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSF----N-------------- 113 (344)
Q Consensus 52 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-------------- 113 (344)
.++..+...+..+-+.++...... +...--.+..++...|++++|.+.|.+.... +
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC------CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 355566666777666665443321 2222234556666777777777777654210 0
Q ss_pred ----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCc-----ccHHHHHHHHHhhCChhHHHHHHHHHhhCCCC
Q 038490 114 ----VQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDA-----CSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQ 184 (344)
Q Consensus 114 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (344)
...-..-|..++..+.+.+.++.+.++-....+...++. ..|..+...+...|++++|...+-.+.....+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 011224567777778888888887777666554433221 24677788888888888888888777665433
Q ss_pred cCHhhHHHHHHHHHhhchH
Q 038490 185 PTLVTFGTLIYGLCLELRV 203 (344)
Q Consensus 185 ~~~~~~~~l~~~~~~~~~~ 203 (344)
......++...|..|..
T Consensus 971 --~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 971 --KSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp --HHHHHHHHHHHHHHCCH
T ss_pred --HHHHHHHHHHHHhCCCh
Confidence 33455555555555443
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.77 E-value=0.45 Score=30.31 Aligned_cols=48 Identities=4% Similarity=0.142 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccC
Q 038490 101 RALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYV 148 (344)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 148 (344)
+..+.++.+...++.|++.+..+.+++|-+.+++..|.++|+.++...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 344444444444444555555555555555555555555555444433
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.76 E-value=0.13 Score=42.81 Aligned_cols=73 Identities=12% Similarity=0.073 Sum_probs=49.5
Q ss_pred cHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHH----HhcCCCCCHHHHH
Q 038490 154 SYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM----RVYNVKPDGQVFA 227 (344)
Q Consensus 154 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ 227 (344)
+...++..+...|+++++...+..+... .+.+...+..+|.++.+.|+..+|.+.|+.+. ++.|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3445666777777787777777777655 24466677777778888888877777776643 2347777766543
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.48 E-value=0.39 Score=39.89 Aligned_cols=66 Identities=11% Similarity=0.076 Sum_probs=38.9
Q ss_pred HHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHh-----cCCCCCHHH
Q 038490 53 IITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSS-----FNVQMTVKF 120 (344)
Q Consensus 53 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 120 (344)
++..+...|++.+|...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3444555666666666666665542 44555666666666666666666666666542 366665543
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.36 E-value=1.2 Score=42.91 Aligned_cols=190 Identities=15% Similarity=0.143 Sum_probs=114.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCc------------------
Q 038490 124 LLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQP------------------ 185 (344)
Q Consensus 124 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------ 185 (344)
++..+...+..+.+.++..-+. .+......+..+|...|++++|.+.|++.-. |+..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhcc----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccc
Confidence 3344445555555554433322 3444445667788889999999999977421 1100
Q ss_pred -----CHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 038490 186 -----TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD---GQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMD 257 (344)
Q Consensus 186 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 257 (344)
-..-|..++..+.+.+.++.+.++-+..++..+..++ ...|..+...+...|++++|...+-.+..... -
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H
Confidence 1133667777888888888888888777765432221 12578888999999999999988887766543 3
Q ss_pred HHHHHHHHHHHHHcCCcC------------cHHHHHHHHHH-c-CCCCChhhHHHHHHHHhccCCHHHH-HHHHHHHh
Q 038490 258 AGIYSSLISALFKAGRKN------------EFPAILKEMKE-R-GCKPNSVTYNALISGFCKEEDFEAA-FTILDEMG 320 (344)
Q Consensus 258 ~~~~~~l~~~~~~~g~~~------------~a~~~~~~~~~-~-~~~p~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 320 (344)
......|+...+..|..+ +..+++..-.+ . .+...+.-|..|-.-+...|++.+| .-+|+.+.
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 456667777666665543 33334332211 1 1111223456666666777777654 44566554
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.21 E-value=0.43 Score=43.15 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=37.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHH
Q 038490 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284 (344)
Q Consensus 231 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 284 (344)
+-+...|+++.|+++-++....-+. +-.+|..|..+|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3345667777777777777766433 5677777777888888877777777665
No 247
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.11 E-value=0.0085 Score=50.36 Aligned_cols=85 Identities=12% Similarity=0.130 Sum_probs=64.9
Q ss_pred CCchhhhhhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCC
Q 038490 2 PTSSIRLACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVP 81 (344)
Q Consensus 2 p~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 81 (344)
|..-++|+....+.+.+.+|++.|-+.. |+..|..++.+..+.|.+++-...+.-..+. .-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA~----------------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~k 114 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKAD----------------DPSSYMEVVQAANTSGNWEELVKYLQMARKK---AR 114 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCCS----------------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CC
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhCC----------------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hc
Confidence 6667889999999999999999996662 5667888999999999999999988766654 22
Q ss_pred chhHHHHHHHHHHhcccHHHHHHH
Q 038490 82 KEIIFCNVIGFYGRARLLERALQM 105 (344)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~ 105 (344)
++..=+.|+-+|++.++..+.+++
T Consensus 115 e~~IDteLi~ayAk~~rL~elEef 138 (624)
T 3lvg_A 115 ESYVETELIFALAKTNRLAELEEF 138 (624)
T ss_dssp STTTTHHHHHHHHTSCSSSTTTST
T ss_pred ccccHHHHHHHHHhhCcHHHHHHH
Confidence 334445688888888876654433
No 248
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.04 E-value=3 Score=36.92 Aligned_cols=288 Identities=9% Similarity=0.023 Sum_probs=153.8
Q ss_pred hhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHH
Q 038490 10 CLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNV 89 (344)
Q Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 89 (344)
....+.|++..+..+-..+...+ .. ....|..+...+ .....+++...+++.. +.+.....-...
T Consensus 14 ~~a~~~~~~~~~~~l~~~l~~~p----------L~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~---~~p~~~~Lr~~~ 78 (618)
T 1qsa_A 14 KQAWDNRQMDVVEQMMPGLKDYP----------LY-PYLEYRQITDDL-MNQPAVTVTNFVRANP---TLPPARTLQSRF 78 (618)
T ss_dssp HHHHHTTCHHHHHHHSGGGTTST----------TH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCT---TCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhhcCCC----------cH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCC---CChhHHHHHHHH
Confidence 33456788888888877762211 11 122343333222 1224555555554432 233333444556
Q ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChh
Q 038490 90 IGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLE 169 (344)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 169 (344)
+..+.+.+++...+..+.. .+.+...-.....+....|+...|......+=..+......+..++..+.+.|.+.
T Consensus 79 l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 79 VNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCC
Confidence 7777778888877765543 14566666667777778888777777666665555556666777777766555432
Q ss_pred H--HHHHHHHHhhCC-----------CCcCH----------------------------hh---HHHHHHHHHhhchHHH
Q 038490 170 D--AWKVFDEMVKRR-----------LQPTL----------------------------VT---FGTLIYGLCLELRVDE 205 (344)
Q Consensus 170 ~--a~~~~~~~~~~~-----------~~~~~----------------------------~~---~~~l~~~~~~~~~~~~ 205 (344)
. ...-++.+...| +.++. .. +...+.-+. ..+.+.
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rla-r~d~~~ 232 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVA-RQDAEN 232 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHH-HHCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHH-hcCHHH
Confidence 2 111111111111 11111 00 000111111 235677
Q ss_pred HHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHH
Q 038490 206 ALKLKEDIMRVYNVKPDGQ--VFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKE 283 (344)
Q Consensus 206 a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 283 (344)
|...+....+...+.+... ....+.......+...++...+....... .+.......+....+.|+++.|...|..
T Consensus 233 A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~ 310 (618)
T 1qsa_A 233 ARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLAR 310 (618)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777544332322211 12222222333442445556666554432 3444444555556678999999999988
Q ss_pred HHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 038490 284 MKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 284 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
|...... ...-.--+.+++...|+.++|..+|+++..
T Consensus 311 l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 311 LPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp SCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8653211 223233355677888999999999999875
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.69 E-value=1 Score=30.41 Aligned_cols=63 Identities=8% Similarity=0.145 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHH
Q 038490 98 LLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIH 160 (344)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 160 (344)
|.-+..+-++.+...++.|++.+....+++|-+.+|+..|.++|+-++....+....|..++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 444566666777777777788888888888888888888888887777665555555655544
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.53 E-value=0.39 Score=30.56 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHH
Q 038490 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALIS 301 (344)
Q Consensus 238 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 301 (344)
+.-+..+-++.+...+..|++.+..+.+++|.+.+++.-|.++|+-++.+- .+....|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 444666666677777777788888888888888888888888887776652 223344655553
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.79 E-value=1.1 Score=31.71 Aligned_cols=24 Identities=8% Similarity=-0.063 Sum_probs=12.3
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHH
Q 038490 192 TLIYGLCLELRVDEALKLKEDIMR 215 (344)
Q Consensus 192 ~l~~~~~~~~~~~~a~~~~~~~~~ 215 (344)
.+.+++...+++..|...|++.++
T Consensus 68 ~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 68 YHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH
Confidence 344455555555555555555443
No 252
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.45 E-value=4 Score=33.76 Aligned_cols=172 Identities=7% Similarity=-0.055 Sum_probs=109.9
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch---hHHHHHHHHHHhc-ccHHHHHHHHHHHHhcCC-CCCHH--
Q 038490 47 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE---IIFCNVIGFYGRA-RLLERALQMFDEMSSFNV-QMTVK-- 119 (344)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~-~~~~~-- 119 (344)
..+...+...|.+.|+.++..+++.....-.+.-|.. .....++..+... +..+.-.++..+..+..- ..-..
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999999998876543223332 3455677777653 334444444444443210 11111
Q ss_pred --HHHHHHHHHHhcCChHHHHHHHHHHhccCC-CC-----cccHHHHHHHHHhhCChhHHHHHHHHHhhC--CCCcCHhh
Q 038490 120 --FFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PD-----ACSYNILIHGCVVSRRLEDAWKVFDEMVKR--RLQPTLVT 189 (344)
Q Consensus 120 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 189 (344)
+=..++..|...|++.+|..++..+.+... .| ...+..-+..|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 223678899999999999999988876433 22 233555667888999999999999887543 22233333
Q ss_pred HHHH----HHHHH-hhchHHHHHHHHHHHHHhcC
Q 038490 190 FGTL----IYGLC-LELRVDEALKLKEDIMRVYN 218 (344)
Q Consensus 190 ~~~l----~~~~~-~~~~~~~a~~~~~~~~~~~~ 218 (344)
...+ ...+. ..+++..|...|-+..+...
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 2211 12345 68899999998888765443
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.40 E-value=2.3 Score=28.82 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=11.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 038490 229 LIKGLCAVGELSLALGVKEEMVRD 252 (344)
Q Consensus 229 l~~~~~~~~~~~~a~~~~~~~~~~ 252 (344)
+.-++.+.|+++.|.+..+.+.+.
T Consensus 84 LAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 84 LTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Confidence 333444555555555555544443
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.13 E-value=4.3 Score=31.38 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=29.5
Q ss_pred HhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcc
Q 038490 94 GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKY 147 (344)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 147 (344)
.+.|+++++++....-++.. |.|...-..|++.++-.|+|++|..-++...+.
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34555555555555555554 455555555556666666666665555555443
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.02 E-value=1 Score=30.41 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=40.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHH
Q 038490 238 ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300 (344)
Q Consensus 238 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 300 (344)
|.-+..+-++.+...+..|++.+..+.+++|.+.+|+.-|.++|+-++.+- .+....|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 344555666666666677777777777777777777777777777776552 22344465554
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.94 E-value=5.3 Score=32.11 Aligned_cols=139 Identities=10% Similarity=-0.030 Sum_probs=78.7
Q ss_pred HHhcccHHHHHHH----HHHHHhcCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHhccCCCCcccHHHHHH
Q 038490 93 YGRARLLERALQM----FDEMSSFNVQMTVKFFNTLLNPKLTCGKLD--------RMKELFQIMEKYVSPDACSYNILIH 160 (344)
Q Consensus 93 ~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~l~~ 160 (344)
+.+.|+...|-++ ++-+.+.+++++......++..+.....-+ +|..+-...-.....++.....+..
T Consensus 65 ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~ 144 (336)
T 3lpz_A 65 LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGT 144 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 3445555444433 355556777888888888888777655321 2222222211111156677788889
Q ss_pred HHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 038490 161 GCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELS 240 (344)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 240 (344)
.|.+.+++.+|...|- . |..++...|..++..+...+... ..+...-.+++ .|...++..
T Consensus 145 ~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~---------------e~dlfiaRaVL-~yL~l~n~~ 204 (336)
T 3lpz_A 145 LYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESH---------------TAPLYCARAVL-PYLLVANVR 204 (336)
T ss_dssp HHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGG---------------GHHHHHHHHHH-HHHHTTCHH
T ss_pred HHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCc---------------cHHHHHHHHHH-HHHHhCCHH
Confidence 9999999999888772 2 33444466666654443333211 12222223333 456678888
Q ss_pred HHHHHHHHHHH
Q 038490 241 LALGVKEEMVR 251 (344)
Q Consensus 241 ~a~~~~~~~~~ 251 (344)
.|..+++...+
T Consensus 205 ~A~~~~~~f~~ 215 (336)
T 3lpz_A 205 AANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887766553
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.38 E-value=5.8 Score=31.60 Aligned_cols=176 Identities=10% Similarity=0.053 Sum_probs=92.3
Q ss_pred HHHHhcCCchHHHHHHHHhhhcC----CCCCchhHHHHHHHHHHhcccHHHHHHH----HHHHHhcCCCCCHHHHHHHHH
Q 038490 55 TKLGRAKMFDEMQQILHQLKHDT----RIVPKEIIFCNVIGFYGRARLLERALQM----FDEMSSFNVQMTVKFFNTLLN 126 (344)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~ 126 (344)
......|++=+|.+.++.+..+. ....-......-...+.+.|+...|-.+ .+.+.+.+++++......++.
T Consensus 21 ~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33444566666666555543321 0000011122223344556776655554 455556678888888888888
Q ss_pred HHHhcCChH-HHHHHHHHH----hccCC---CCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHH
Q 038490 127 PKLTCGKLD-RMKELFQIM----EKYVS---PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLC 198 (344)
Q Consensus 127 ~~~~~~~~~-~a~~~~~~~----~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 198 (344)
.+.....-+ .-..+++.+ .+.+. .++.....+...|.+.|++.+|...|-. |..-|...+..++.-+.
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHH
Confidence 776643211 112222222 22211 5667788888889999988888877641 11113455555554444
Q ss_pred hh---chHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038490 199 LE---LRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250 (344)
Q Consensus 199 ~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 250 (344)
.. |...++- ...-.++ -.|...++...|..+++...
T Consensus 177 ~~~~~~~~~e~d---------------lf~~RaV-L~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 177 CQVDDIEDSTVA---------------EFFSRLV-FNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHTTCCCHHHHH---------------HHHHHHH-HHHHHTTBHHHHHHHHHHHH
T ss_pred HhcCCCCcchHH---------------HHHHHHH-HHHHHhcCHHHHHHHHHHHH
Confidence 33 3222221 1111222 23556788888888888765
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.92 E-value=3.4 Score=29.21 Aligned_cols=122 Identities=10% Similarity=0.026 Sum_probs=62.6
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCch-------hHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCCC
Q 038490 47 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKE-------IIFCNVIGFYGRARLLERALQMFDEMSSFN--VQMT 117 (344)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~ 117 (344)
..++-.-+..+...|.++.|+-+...+....+..|+. .++..+.+++...+++..|...|++.++.. +..+
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445556677778888888887777655432222331 244556677778888888888888765321 1111
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhh
Q 038490 118 VKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVK 180 (344)
Q Consensus 118 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 180 (344)
...+..+-. ....... .. ...+...-.-+..+|.+.+++++|+.+++.+..
T Consensus 100 ~s~~~~~~~----~ss~p~s-------~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 100 SKVRPSTGN----SASTPQS-------QC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ----------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred CCccccccc----cCCCccc-------cc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 111111100 0000000 00 001223334467788888888888888876543
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.28 E-value=2.5 Score=32.61 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=73.4
Q ss_pred HHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCC--CcCHhhHHHHHHHHHhhchH
Q 038490 126 NPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRL--QPTLVTFGTLIYGLCLELRV 203 (344)
Q Consensus 126 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 203 (344)
....+.|+++.++.....-.+..|.|...-..++..+|-.|++++|.+-++...+... .|....|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-------
Confidence 3456788899999888888887788888888889999999999999988888776521 1122233333322
Q ss_pred HHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHC
Q 038490 204 DEALKLKEDIMRVYN----VKPDGQVFASLIKGLC--AVGELSLALGVKEEMVRD 252 (344)
Q Consensus 204 ~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 252 (344)
+..=.+++.... +.........++.+.. ..|+.++|..+-.++.+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 222222222110 1112334445555543 458888888888877654
No 260
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.67 E-value=4.4 Score=27.84 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038490 202 RVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD 252 (344)
Q Consensus 202 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (344)
+..+++.+++.+.+.. ..-.....-.+.-++.+.|++++|.+..+.+++.
T Consensus 57 di~~GI~LLe~l~~~~-~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 57 DERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHHHHC-CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcC-ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3345555666655532 1112223333444555666666666666666655
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.20 E-value=7.3 Score=32.77 Aligned_cols=62 Identities=10% Similarity=-0.156 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhhchHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038490 189 TFGTLIYGLCLELRVDEALKLKEDIMRVYN-VKPDGQVFASLIKGLCAVGELSLALGVKEEMV 250 (344)
Q Consensus 189 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 250 (344)
+...+...|.+.|+++.|.+.+.++..... ...-...+-.+++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 445566666677777777777766544321 11123445555666666666666666666654
No 262
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.08 E-value=4.6 Score=27.36 Aligned_cols=66 Identities=14% Similarity=0.038 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHcCCc---CcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 038490 256 MDAGIYSSLISALFKAGRK---NEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 256 ~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
|+..+-..+..+++++.+. .+++.+++++.+.+..-....+-.+.-++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444444444332 23444444444433111122222333345555555555555555544
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.58 E-value=12 Score=31.51 Aligned_cols=100 Identities=10% Similarity=-0.115 Sum_probs=63.1
Q ss_pred cccHHHHHHHHHhhCChhHHHHHHHHHhhC--CCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038490 152 ACSYNILIHGCVVSRRLEDAWKVFDEMVKR--RLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASL 229 (344)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 229 (344)
..+...+...|.+.|+++.|.+.+.++... +..--...+-.+++.+...+++..+...+.++.....-.++....+.+
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 346777888888888888888888888764 222234456667777788888888888887764433223333322221
Q ss_pred ----HHHHHhcCChHHHHHHHHHHHH
Q 038490 230 ----IKGLCAVGELSLALGVKEEMVR 251 (344)
Q Consensus 230 ----~~~~~~~~~~~~a~~~~~~~~~ 251 (344)
...+...+++..|...|-+...
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1122356778877777766654
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.55 E-value=4.7 Score=25.65 Aligned_cols=56 Identities=11% Similarity=0.090 Sum_probs=26.0
Q ss_pred HhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccH
Q 038490 94 GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSY 155 (344)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (344)
...|++++|..+.+.+. .||...|..|.. .+.|-.+.+...+.++...+.|....|
T Consensus 51 mNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg~p~~q~F 106 (116)
T 2p58_C 51 MNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQDPRIQTF 106 (116)
T ss_dssp HHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCCCHHHHHH
Confidence 34555555555544433 444444443332 344555555555555544444433333
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.66 E-value=9.9 Score=27.91 Aligned_cols=69 Identities=9% Similarity=0.015 Sum_probs=43.5
Q ss_pred CCCchhHHHHHHHHHHh--cccHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhcc
Q 038490 79 IVPKEIIFCNVIGFYGR--ARLLERALQMFDEMSSFNVQMT-VKFFNTLLNPKLTCGKLDRMKELFQIMEKY 147 (344)
Q Consensus 79 ~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 147 (344)
.+-|.......+...-. .+....+..+|..|...||-.. ...|......+...|++.+|..+|+.-.+.
T Consensus 73 YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 45566544444433322 3446677777777776665443 456777777777778888888888777664
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.73 E-value=4.4 Score=25.73 Aligned_cols=53 Identities=9% Similarity=0.016 Sum_probs=23.1
Q ss_pred HhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCc
Q 038490 94 GRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDA 152 (344)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 152 (344)
...|++++|..+.+.+. .||...|..|.. .+.|-.+.+...+.++...+.|..
T Consensus 50 mNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg~p~~ 102 (115)
T 2uwj_G 50 ANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSSDPAL 102 (115)
T ss_dssp HHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCSSHHH
T ss_pred HcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCCCHHH
Confidence 34455555554443332 344444433322 344444455544444444443333
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=82.67 E-value=12 Score=27.44 Aligned_cols=56 Identities=9% Similarity=0.006 Sum_probs=44.2
Q ss_pred cCChHHHHHHHHHHhccCC--CCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcC
Q 038490 131 CGKLDRMKELFQIMEKYVS--PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186 (344)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 186 (344)
.++...+..+|..|...+. .-...|......+-..|++.+|.++|+.-.+.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4456788888888877655 5566778888888889999999999998888877763
No 268
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.17 E-value=10 Score=26.10 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc
Q 038490 220 KPDGQVFASLIKGLCAVGE---LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER 287 (344)
Q Consensus 220 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 287 (344)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+..-.....-.|.-++.+.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4455554445555555443 2345555555555432222333344455556666666666666665554
No 269
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.51 E-value=21 Score=29.49 Aligned_cols=242 Identities=9% Similarity=0.003 Sum_probs=137.9
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhc-CCCC---CHHHHHHHHHHHHhc-CChHHHHHHHHHHhccCCCCcccH---
Q 038490 84 IIFCNVIGFYGRARLLERALQMFDEMSSF-NVQM---TVKFFNTLLNPKLTC-GKLDRMKELFQIMEKYVSPDACSY--- 155 (344)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--- 155 (344)
.....|...|.+.|+.++..+++...... +.-+ .......++..+... +..+.-.++..+..+.......+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566889999999999999998877532 1111 234566777777664 334444455444443222233444
Q ss_pred ---HHHHHHHHhhCChhHHHHHHHHHhhCCCCcC-----HhhHHHHHHHHHhhchHHHHHHHHHHHHHhcC-CCCCHHHH
Q 038490 156 ---NILIHGCVVSRRLEDAWKVFDEMVKRRLQPT-----LVTFGTLIYGLCLELRVDEALKLKEDIMRVYN-VKPDGQVF 226 (344)
Q Consensus 156 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 226 (344)
.-++..|...|++.+|.+++.++.+.=-..| ...+..-+..|...+++.++...+.......+ +.+++.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2578899999999999999998876411112 22344556778889999999999987654332 22444433
Q ss_pred HHH----HHHHH-hcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCCcCcHHHHHH-HHHHcCCCCChh
Q 038490 227 ASL----IKGLC-AVGELSLALGVKEEMVRDKIEMD------AGIYSSLISALFKAGRKNEFPAILK-EMKERGCKPNSV 294 (344)
Q Consensus 227 ~~l----~~~~~-~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~p~~~ 294 (344)
..+ ...+. ..+++..|...|-+..+.--... ...|..|.. .-.++..+...++. .....-..|+..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a--Ll~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK--IMLGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH--HHTTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHcCCHHHHHHHhccccccccCCccHH
Confidence 222 22345 78899999887776643110111 122322222 22344444444332 211111245555
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChh
Q 038490 295 TYNALISGFCKEEDFEAAFTILDEMGDKGCKANPI 329 (344)
Q Consensus 295 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 329 (344)
.+..++.+| ..+++.+...+++.... .+..|..
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 566666654 45677777777666543 2444554
No 270
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.85 E-value=19 Score=33.91 Aligned_cols=48 Identities=6% Similarity=-0.002 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccCC-CCc----ccHHHHHHHHHhhC
Q 038490 119 KFFNTLLNPKLTCGKLDRMKELFQIMEKYVS-PDA----CSYNILIHGCVVSR 166 (344)
Q Consensus 119 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~ 166 (344)
.-|..++..+-+.+-++.+.++-+...+.-. .+. ..|+.+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 3678888888888888888887777665433 222 24555666555443
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=79.23 E-value=11 Score=29.05 Aligned_cols=82 Identities=10% Similarity=-0.076 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhcCCCCCch---hHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHH--HHHHHHH
Q 038490 52 LIITKLGRAKMFDEMQQILHQLKHDTRIVPKE---IIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK--FFNTLLN 126 (344)
Q Consensus 52 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~ 126 (344)
..+...++.|+.+.+..+++. |..++. ..-.+.+...+..|+.+-+. .+.+.|..++.. .-.+.+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~ 77 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEG-----GANVNFQEEEGGWTPLHNAVQMSREDIVE----LLLRHGADPVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-----TCCTTCCCTTTCCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCCHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHc-----CCCcccccCCCCCcHHHHHHHcCCHHHHH----HHHHcCCCCcccCCCCCCHHH
Confidence 345556677777766665543 222221 11123344445666665443 334444333221 1112333
Q ss_pred HHHhcCChHHHHHHHH
Q 038490 127 PKLTCGKLDRMKELFQ 142 (344)
Q Consensus 127 ~~~~~~~~~~a~~~~~ 142 (344)
..+..|+.+-+..+++
T Consensus 78 ~A~~~~~~~~v~~Ll~ 93 (285)
T 1wdy_A 78 LAAIAGSVKLLKLFLS 93 (285)
T ss_dssp HHHHHTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3445566655444444
No 272
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=75.45 E-value=44 Score=29.69 Aligned_cols=177 Identities=7% Similarity=-0.043 Sum_probs=95.7
Q ss_pred CchHHHHHHHHhhhcCCCCCchh--HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 038490 62 MFDEMQQILHQLKHDTRIVPKEI--IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKE 139 (344)
Q Consensus 62 ~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 139 (344)
+.+.|...+....+.....+... ....+.......+...++...+...... ..+.....-.+....+.|+++.|..
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHH
Confidence 67888888887765422222211 1222232333344345566666655443 3444444555555667799999999
Q ss_pred HHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhC------------CCCc-------C---Hh-----hHHH
Q 038490 140 LFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKR------------RLQP-------T---LV-----TFGT 192 (344)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~-------~---~~-----~~~~ 192 (344)
.|+.|............=+.+++...|+.++|..+|..+... |.++ + .. .-..
T Consensus 307 ~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (618)
T 1qsa_A 307 WLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMA 386 (618)
T ss_dssp HHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHH
T ss_pred HHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHH
Confidence 998886532222333344556777889999998888876542 2111 0 00 0111
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 038490 193 LIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALG 244 (344)
Q Consensus 193 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 244 (344)
.+..+...|....|...+..+.+. .+......+.......|..+.+..
T Consensus 387 r~~~L~~~g~~~~a~~ew~~~~~~----~~~~~~~~la~~a~~~~~~~~~v~ 434 (618)
T 1qsa_A 387 RVRELMYWNLDNTARSEWANLVKS----KSKTEQAQLARYAFNNQWWDLSVQ 434 (618)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCChHHHHH
Confidence 233456677777777777765542 222333344444445566555543
No 273
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=75.44 E-value=11 Score=29.42 Aligned_cols=12 Identities=8% Similarity=0.022 Sum_probs=5.2
Q ss_pred hcCCchHHHHHH
Q 038490 59 RAKMFDEMQQIL 70 (344)
Q Consensus 59 ~~~~~~~a~~~~ 70 (344)
..|+.+-+..++
T Consensus 40 ~~g~~~~v~~Ll 51 (285)
T 3kea_A 40 ADNNVRLVCTLL 51 (285)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 345544443333
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.50 E-value=14 Score=23.52 Aligned_cols=89 Identities=11% Similarity=0.022 Sum_probs=62.3
Q ss_pred hcccHHHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHH
Q 038490 95 RARLLERALQMFDEMSSFNVQMTVKFFNTLL--NPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAW 172 (344)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 172 (344)
-....++|..+-+-+...+ + .-...+| ..+...|++++|..+.+.+. .||...|.+|.. .+.|-.+++.
T Consensus 18 G~H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALce--~rlGl~s~le 88 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGNP---WPALEPWFALCE--WHLGLGAALD 88 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC---CGGGHHHHHHHH--HHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHHH--HhcccHHHHH
Confidence 4567788888888887754 3 3334444 45678899999998766553 378877776654 5788889999
Q ss_pred HHHHHHhhCCCCcCHhhHHHH
Q 038490 173 KVFDEMVKRRLQPTLVTFGTL 193 (344)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~l 193 (344)
..+.++..+| .|....|..-
T Consensus 89 ~rL~~la~sg-~p~~q~Fa~g 108 (115)
T 2uwj_G 89 RRLAGLGGSS-DPALADFAAG 108 (115)
T ss_dssp HHHHHHHTCS-SHHHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHHHH
Confidence 9888888776 4455555443
No 275
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=73.84 E-value=15 Score=25.93 Aligned_cols=73 Identities=16% Similarity=0.082 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCcCc
Q 038490 203 VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRD--KIEMDAGIYSSLISALFKAGRKNE 276 (344)
Q Consensus 203 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~ 276 (344)
.+.+.+.+.+.++..|.+.+.. -..++..+...+..-.|.++++.+.+. ++..+..|.---+..+.+.|-+.+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 4566667777777778888754 345566667777788899999999887 777777777677788888886654
No 276
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.64 E-value=15 Score=23.45 Aligned_cols=90 Identities=11% Similarity=0.027 Sum_probs=63.7
Q ss_pred HhcccHHHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHH
Q 038490 94 GRARLLERALQMFDEMSSFNVQMTVKFFNTLL--NPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDA 171 (344)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 171 (344)
.-....++|..+-+-+...+ + .-...+| ..+...|++++|..+.+.+. .||...|.+|.. .+.|-.+++
T Consensus 18 TG~H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALce--~rlGl~s~l 88 (116)
T 2p58_C 18 TGNHYHEEANCIAEWLHLKG---E-EEAVQLIRLSSLMNRGDYASALQQGNKLA---YPDLEPWLALCE--YRLGLGSAL 88 (116)
T ss_dssp HTTTCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC---CGGGHHHHHHHH--HHHTCHHHH
T ss_pred ccchHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHHH--HhcccHHHH
Confidence 34567888888888888754 3 3334444 45678999999998876654 488888876654 578888999
Q ss_pred HHHHHHHhhCCCCcCHhhHHHH
Q 038490 172 WKVFDEMVKRRLQPTLVTFGTL 193 (344)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~l 193 (344)
...+.++..+| .|....|..-
T Consensus 89 e~rL~~la~sg-~p~~q~Fa~g 109 (116)
T 2p58_C 89 ESRLNRLARSQ-DPRIQTFVNG 109 (116)
T ss_dssp HHHHHHHTTCC-CHHHHHHHHH
T ss_pred HHHHHHHHhCC-CHHHHHHHHH
Confidence 99888888776 4455555443
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=73.28 E-value=20 Score=24.89 Aligned_cols=66 Identities=9% Similarity=0.043 Sum_probs=45.1
Q ss_pred CCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhcc
Q 038490 79 IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT-VKFFNTLLNPKLTCGKLDRMKELFQIMEKY 147 (344)
Q Consensus 79 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 147 (344)
.+-|.......+...-...+ +..+|..|...||-.. ...|......+...|++.+|..+|+.-.+.
T Consensus 64 YknD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp GTTCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 45566655555544333333 7788888887765443 456778888888888888888888887764
No 278
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=73.06 E-value=36 Score=28.77 Aligned_cols=111 Identities=10% Similarity=0.006 Sum_probs=58.1
Q ss_pred CCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 038490 61 KMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKEL 140 (344)
Q Consensus 61 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 140 (344)
.+.+-|.++..+ .|++--...|..-...+...|++++|.++--...+ |+-.+..|.+.+-..-..-|...-.+.+
T Consensus 343 ~n~~lA~~lA~R----~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 343 QNPDLALRMAVR----NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp CCHHHHHHHHHH----TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred CCHHHHHHHHHh----cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 444444444333 24444445555555666666666666666554432 3345555555555544445555556666
Q ss_pred HHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHH
Q 038490 141 FQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFD 176 (344)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 176 (344)
|..+.+.+..+..----+++.-...|+.+-.++++.
T Consensus 418 F~~Ll~~g~Ln~~ESlEl~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 418 FGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhccCccchHHhhHHhHHHHhccHHHHHHHHHh
Confidence 666655555444333344555555566555555543
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=71.88 E-value=27 Score=26.44 Aligned_cols=30 Identities=13% Similarity=-0.006 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038490 220 KPDGQVFASLIKGLCAVGELSLALGVKEEM 249 (344)
Q Consensus 220 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 249 (344)
.++.......+..+.+.|+.++|.++|=+.
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 334444555556666777777776666443
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=71.62 E-value=23 Score=24.68 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=36.0
Q ss_pred HHHHHHHHhccCC--CCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcC
Q 038490 137 MKELFQIMEKYVS--PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPT 186 (344)
Q Consensus 137 a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 186 (344)
+..+|..|...+. .-...|......+-..|++.+|.++|+.-.+.+-.|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 6777777766655 4455677777777788888888888888777766663
No 281
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=69.29 E-value=21 Score=28.32 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhccc--HHHHHHHHHHHH
Q 038490 50 YDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL--LERALQMFDEMS 110 (344)
Q Consensus 50 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~ 110 (344)
...++.-|...|+.++|...++++... . -.......++......++ -+.+-.++..+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p-~--~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~ 65 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLG-E--MKSGVPVLAVSLALEGKASHREMTSKLLSDLC 65 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCG-G--GGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCc-c--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 456788888888888888888886432 1 122333344443333332 233444555554
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=68.49 E-value=28 Score=24.56 Aligned_cols=66 Identities=8% Similarity=0.108 Sum_probs=36.5
Q ss_pred CCCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhcc
Q 038490 79 IVPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMT-VKFFNTLLNPKLTCGKLDRMKELFQIMEKY 147 (344)
Q Consensus 79 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 147 (344)
.+-|...+...+...-.. +.+..+|..|...||-.. ...|......+...|++.+|.++|+.-.+.
T Consensus 59 YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 59 YYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp GTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 344554444444322222 235566666666654433 445666666666677777777777766654
No 283
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=66.85 E-value=38 Score=25.36 Aligned_cols=46 Identities=13% Similarity=0.293 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 038490 101 RALQMFDEMSSFNVQMT-VKFFNTLLNPKLTCGKLDRMKELFQIMEK 146 (344)
Q Consensus 101 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 146 (344)
.+..+|..|...||-.. ...|......+...|++.+|..+|+.-.+
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555443322 33455555555555555555555555444
No 284
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=66.70 E-value=18 Score=21.70 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=14.8
Q ss_pred cCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccC
Q 038490 274 KNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307 (344)
Q Consensus 274 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 307 (344)
.-.+.++++.+.+.+...+..|....+..+.+.|
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 4445555555544433334444333344443333
No 285
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=66.54 E-value=23 Score=24.34 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=33.8
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 038490 247 EEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308 (344)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 308 (344)
+.+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|.--.+..+...|-
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3445566664433 334455555555666777777777666555555554444455555443
No 286
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=66.49 E-value=35 Score=24.84 Aligned_cols=30 Identities=23% Similarity=0.228 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038490 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVR 251 (344)
Q Consensus 221 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 251 (344)
++..+-...+.++.+.+.. .+...+..+.+
T Consensus 155 ~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~ 184 (211)
T 3ltm_A 155 EDGWVRQSAADALGEIGGE-RVRAAMEKLAE 184 (211)
T ss_dssp SSHHHHHHHHHHHHHHCSH-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCch-hHHHHHHHHHh
Confidence 3444444445555555442 33334444433
No 287
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=66.33 E-value=28 Score=26.54 Aligned_cols=50 Identities=10% Similarity=0.119 Sum_probs=25.4
Q ss_pred HHHcCCcCcHHHHHHHHHHcCCCCChhhH--HHHHHHHhccCCHHHHHHHHH
Q 038490 268 LFKAGRKNEFPAILKEMKERGCKPNSVTY--NALISGFCKEEDFEAAFTILD 317 (344)
Q Consensus 268 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~ 317 (344)
.+..++.....++++.+.+.|..++.... .+.+...++.|+.+-+..+++
T Consensus 189 a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 34455555666777777777665544221 122333445566554444333
No 288
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.91 E-value=65 Score=27.78 Aligned_cols=66 Identities=5% Similarity=-0.028 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-CCCH--HHH-HHHHHHHHhcCChHHHHHHHHHHhccCC
Q 038490 84 IIFCNVIGFYGRARLLERALQMFDEMSSFNV-QMTV--KFF-NTLLNPKLTCGKLDRMKELFQIMEKYVS 149 (344)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 149 (344)
..++.+++.|...+.++.|..+..+..--.. .++. ..| -.+...+.-.+++.+|.+.+.......+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 4456666777777777777777766641100 0111 111 2234455566777777776666655444
No 289
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=65.31 E-value=33 Score=24.21 Aligned_cols=70 Identities=14% Similarity=0.184 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCC--CCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCH
Q 038490 115 QMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVS--PDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL 187 (344)
Q Consensus 115 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 187 (344)
.-|......-+...-..+ ....+|..|...+. .-...|......+-..|++.+|.++|+.-.+.+-.|-.
T Consensus 60 knD~RyLklWl~ya~~~~---~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLCN---EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp TTCHHHHHHHHHHHHHCS---CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccCHHHHHHHHHHHHhcC---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 445554444443222233 36677888876655 45566778888888889999999999988888777754
No 290
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=63.86 E-value=58 Score=26.51 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--cCcHHHHHHHHHHcCCCCChhh
Q 038490 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR--KNEFPAILKEMKERGCKPNSVT 295 (344)
Q Consensus 226 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~ 295 (344)
...++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+....++..+...|+-+....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 567777788888888888888877532211 23333444444443322 2346666667766655433333
No 291
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=63.84 E-value=38 Score=24.36 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038490 221 PDGQVFASLIKGLCAVGELSLALGVKEEMV 250 (344)
Q Consensus 221 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 250 (344)
++..+-...+.++.+.|.. ++...+..+.
T Consensus 150 ~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l 178 (201)
T 3ltj_A 150 EDGWVRQSAADALGEIGGE-RVRAAMEKLA 178 (201)
T ss_dssp SSHHHHHHHHHHHHHHCSH-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 3444444444555555443 2333343443
No 292
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=63.10 E-value=41 Score=24.45 Aligned_cols=109 Identities=13% Similarity=0.039 Sum_probs=58.5
Q ss_pred CHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038490 186 TLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLI 265 (344)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 265 (344)
+...-...+.++.+.++.+ +...+..++. .++..+-...+.++.+.++.+ +...+..+.. .++..+-...+
T Consensus 94 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHH-HHHHHHHHHh----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 3333334444444444422 2333333332 456566666666666766644 4444444443 34667777777
Q ss_pred HHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccC
Q 038490 266 SALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEE 307 (344)
Q Consensus 266 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 307 (344)
.++.+.+. .++...+..+... ++...-...+.++.+.+
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred HHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 77877775 4666666666654 35555555556655544
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=63.05 E-value=47 Score=25.13 Aligned_cols=90 Identities=12% Similarity=0.116 Sum_probs=53.3
Q ss_pred HHHHHHhcCCchHHHHHHHHhhhcC-CCCC----chhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038490 53 IITKLGRAKMFDEMQQILHQLKHDT-RIVP----KEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNP 127 (344)
Q Consensus 53 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (344)
-++.+....++++|.+++++..+.. +.++ ........++.-.....-.-+..+.+++.. ..+.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 5677888899999999988765431 1221 112233344444444444455555555533 3445556666677
Q ss_pred HHhcCChHHHHHHHHHHh
Q 038490 128 KLTCGKLDRMKELFQIME 145 (344)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~ 145 (344)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 778888888887775543
No 294
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=62.45 E-value=26 Score=24.26 Aligned_cols=62 Identities=10% Similarity=0.188 Sum_probs=35.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 038490 246 KEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308 (344)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 308 (344)
.+.+.+.|.+++ ..-..++..+...+..-.|.++++.+.+.+...+..|.--.+..+...|-
T Consensus 15 ~~~l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 15 RMSIKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 344555666633 33445566666666677788888888777655555555444555555554
No 295
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=61.66 E-value=31 Score=24.02 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHh
Q 038490 122 NTLLNPKLTCGKLDRMKELFQIME 145 (344)
Q Consensus 122 ~~l~~~~~~~~~~~~a~~~~~~~~ 145 (344)
..++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344444555555555555555553
No 296
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=61.31 E-value=20 Score=25.78 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=10.0
Q ss_pred HHHHHHHHHcCCCCCh
Q 038490 278 PAILKEMKERGCKPNS 293 (344)
Q Consensus 278 ~~~~~~~~~~~~~p~~ 293 (344)
.++++.+.+.|..++.
T Consensus 158 ~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 158 QDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHCCCCCCc
Confidence 5666666666665554
No 297
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=61.17 E-value=4.7 Score=26.65 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=54.1
Q ss_pred hhhhcccCCchHHhhhhcCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHH
Q 038490 9 ACLPRLQKDPKLALQLFKNPNPNPNDTEAHPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCN 88 (344)
Q Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 88 (344)
+-.|.++++|.+++.+.++=. .|--.|...+..++.+-|.++++.+...+ +...|.+
T Consensus 13 ~~~ykkN~rw~qSI~L~KkDk-------------------LykDAietAa~S~d~elaEeLL~yFVe~g----~kEcF~A 69 (125)
T 3qil_A 13 GLVPRGSHMWKQSVELAKKDS-------------------LYKDAMQYASESKDTELAEELLQWFLQEE----KRECFGA 69 (125)
T ss_dssp CCCSSSCCCCSSCCCCCSCCC-------------------CSSHHHHTTTSSCCSHHHHHHHHHHTTSC----SHHHHHH
T ss_pred cchhhccccHHHHHHHHHhcc-------------------cHHHHHHHHHHcCCHHHHHHHHHHHHHcC----chHHHHH
Confidence 456788888888888775421 14446777888899999999999888752 6677888
Q ss_pred HHHHHHhcccHHHHHHH
Q 038490 89 VIGFYGRARLLERALQM 105 (344)
Q Consensus 89 l~~~~~~~~~~~~a~~~ 105 (344)
.+-.|...=+++-++++
T Consensus 70 ~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 70 CLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp HHHHHTTCSCTTHHHHT
T ss_pred HHHHHHhccChHHHHHH
Confidence 88888777777665543
No 298
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=61.16 E-value=22 Score=24.08 Aligned_cols=60 Identities=15% Similarity=0.152 Sum_probs=34.1
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcC-CcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 038490 248 EMVRDKIEMDAGIYSSLISALFKAG-RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308 (344)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 308 (344)
.+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.---+..+...|-
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 345566664443 234455555555 566777888877777655555555444555555543
No 299
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=60.73 E-value=67 Score=26.16 Aligned_cols=201 Identities=9% Similarity=0.008 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCC--hhHHHHHHHHHhhCCCCcCHhhHHHHHHHH
Q 038490 120 FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRR--LEDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197 (344)
Q Consensus 120 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 197 (344)
....++.-|...++.++|...++++.... ........++..-...++ .+.+-.++..+.. ++-+.......+...+
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~-~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll 133 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGE-MKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKLL 133 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCG-GGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCch-hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 46778888999999999999999875311 122222333333333222 3445566666653 4443433333333333
Q ss_pred Hhhch--------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH---H---------------
Q 038490 198 CLELR--------VDEALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMV---R--------------- 251 (344)
Q Consensus 198 ~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~--------------- 251 (344)
....+ ++-.-.++.+++....++|.... ... .+. .-+.+.++++... .
T Consensus 134 e~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~-~~~----~~~-~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g 207 (358)
T 3eiq_C 134 KDLPELALDTPRAPQLVGQFIARAVGDGILCNTYID-SYK----GTV-DCVQARAALDKATVLLSMSKGGKRKDSVWGSG 207 (358)
T ss_dssp HTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTG-GGC--------CCHHHHHHHHHHHHHHTC---------CCCCC
T ss_pred HhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHH-HHh----hcc-cchHHHHHHHHHHHHHhccchHHHHHHhcCCC
Confidence 32222 12222333344444344443211 000 000 1112222222211 1
Q ss_pred CCCCCC---HHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC--HHHHHHHHHHHhhCCCCC
Q 038490 252 DKIEMD---AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED--FEAAFTILDEMGDKGCKA 326 (344)
Q Consensus 252 ~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p 326 (344)
.+..|. ......++.=|...|+.++|.+.++++..-.+. .......+..++-+.++ .+....++..+.+.|+-+
T Consensus 208 ~~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 208 GGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred CCCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 011221 223577888899999999999999988642221 12233444445544333 456777888887766544
Q ss_pred Chh
Q 038490 327 NPI 329 (344)
Q Consensus 327 ~~~ 329 (344)
...
T Consensus 287 ~~q 289 (358)
T 3eiq_C 287 IDQ 289 (358)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 300
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=60.66 E-value=37 Score=23.62 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHH
Q 038490 190 FGTLIYGLCLELRVDEALKLKEDI 213 (344)
Q Consensus 190 ~~~l~~~~~~~~~~~~a~~~~~~~ 213 (344)
...++.-|...|+.++|.+.++++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 455666677777777777777663
No 301
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=59.39 E-value=37 Score=22.76 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhchHHHHHHHHHH
Q 038490 190 FGTLIYGLCLELRVDEALKLKED 212 (344)
Q Consensus 190 ~~~l~~~~~~~~~~~~a~~~~~~ 212 (344)
...++.-|...|+.++|.+.+++
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~e 32 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKE 32 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 34455555555555555555555
No 302
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=58.42 E-value=25 Score=24.32 Aligned_cols=60 Identities=8% Similarity=0.088 Sum_probs=30.8
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcC-CcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 038490 248 EMVRDKIEMDAGIYSSLISALFKAG-RKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308 (344)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 308 (344)
.+.+.|.+++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.---+..+...|-
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 3445565544332 23444444444 555677777777666554455544444444544443
No 303
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=57.56 E-value=40 Score=22.59 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=12.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHh
Q 038490 122 NTLLNPKLTCGKLDRMKELFQIME 145 (344)
Q Consensus 122 ~~l~~~~~~~~~~~~a~~~~~~~~ 145 (344)
..++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 344555555555555555555553
No 304
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=56.50 E-value=46 Score=24.60 Aligned_cols=13 Identities=0% Similarity=0.153 Sum_probs=5.4
Q ss_pred hcCCchHHHHHHH
Q 038490 59 RAKMFDEMQQILH 71 (344)
Q Consensus 59 ~~~~~~~a~~~~~ 71 (344)
+.|+.+.+..+++
T Consensus 18 ~~g~~~~v~~Ll~ 30 (241)
T 1k1a_A 18 VQGNLPAVHRLVN 30 (241)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3344444444443
No 305
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=53.60 E-value=63 Score=24.95 Aligned_cols=230 Identities=10% Similarity=-0.002 Sum_probs=110.3
Q ss_pred cCCchHHHHHHHHhhhcCCC-CCchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 038490 60 AKMFDEMQQILHQLKHDTRI-VPKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMK 138 (344)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 138 (344)
..+..+..+++..- ++ ..|..-. +.+...+..|+.+-+..+++. |..++..--.+.+...+..|+.+-+.
T Consensus 9 ~~~~~~v~~lL~~~----~~~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 9 TWKSKQLKSFLSSK----DTFKADVHGH-SASYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVK 79 (285)
T ss_dssp GCCHHHHHHHHHST----TTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHH
T ss_pred hcCHHHHHHHHHhC----CCCccCCCCC-CHHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 34555666655432 22 2233322 234445567887766555554 32322211233455566778877666
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhh---HHHHHHHHHhhchHHHHHHHHHHHHH
Q 038490 139 ELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVT---FGTLIYGLCLELRVDEALKLKEDIMR 215 (344)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~ 215 (344)
.+++.-......+..-++.+. ..+..|+.+-+.-+++. |..++... +...+...+..|+.+-+..+++.
T Consensus 80 ~Ll~~ga~~~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~--- 151 (285)
T 3kea_A 80 ILLFSGLDDSQFDDKGNTALY-YAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE--- 151 (285)
T ss_dssp HHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT---
T ss_pred HHHHCCCCCCCcCCCCCcHHH-HHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC---
Confidence 665542221113333333333 34456766655444443 44443322 12344445667776655444432
Q ss_pred hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChh
Q 038490 216 VYNVKP-DGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSV 294 (344)
Q Consensus 216 ~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 294 (344)
+..+ +...-...+...+..|+.+-+..+++.-...... +..-.+..+...+..|+ .++.+.+.+.|..|+..
T Consensus 152 --g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~----~~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 152 --IPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKD----IEMLQALFKYDINIYSA 224 (285)
T ss_dssp --SCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTC----HHHHHHHTTSCBCSTTT
T ss_pred --CCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCCCC
Confidence 2222 2212233444556778887766666654443322 22222332333444555 35666677778777766
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHH
Q 038490 295 TYNALISGFCKEEDFEAAFTILDE 318 (344)
Q Consensus 295 ~~~~l~~~~~~~~~~~~a~~~~~~ 318 (344)
.. .-...|+.+-+..+++.
T Consensus 225 ~~-----~a~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 225 NL-----ENVLLDDAEIAKMIIEK 243 (285)
T ss_dssp TG-----GGGTTTCHHHHHHHHHH
T ss_pred Ch-----hhhhcCCHHHHHHHHHc
Confidence 52 11345665555444443
No 306
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=53.59 E-value=86 Score=25.23 Aligned_cols=168 Identities=10% Similarity=0.017 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHH----HHHHHHhhCCCCcCHhhHHHHHH
Q 038490 120 FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAW----KVFDEMVKRRLQPTLVTFGTLIY 195 (344)
Q Consensus 120 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~~~~~~l~~ 195 (344)
+|.++..-|.+.+++++|.+++-.-. ..+.+.|+...+- -+++-..+.++++|......++.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA--------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS--------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34445555777888888887764432 2233334433322 23344444556666666555555
Q ss_pred HHHhhchHH-HHHHHHHHHH---HhcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038490 196 GLCLELRVD-EALKLKEDIM---RVYN--VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALF 269 (344)
Q Consensus 196 ~~~~~~~~~-~a~~~~~~~~---~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 269 (344)
.+.....-+ .-..+.++++ ...| ..-|+.....+...|.+.+++.+|...|- .|-.+++..+..++.-+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHH
Confidence 544332110 0111222211 1112 34467788888899999999999887762 233434467766655555
Q ss_pred HcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHh
Q 038490 270 KAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDFEAAFTILDEMG 320 (344)
Q Consensus 270 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 320 (344)
..+...++--++ -. .+--|...++...|..+++...
T Consensus 179 ~~~~~~e~dlfi--------------aR-aVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 179 KQDESHTAPLYC--------------AR-AVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HTSCGGGHHHHH--------------HH-HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCccHHHHH--------------HH-HHHHHHHhCCHHHHHHHHHHHH
Confidence 544322221111 11 2223455667777777666554
No 307
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=52.62 E-value=31 Score=24.25 Aligned_cols=69 Identities=10% Similarity=0.109 Sum_probs=42.6
Q ss_pred HHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHc--CCCCChhhHHHHHHHHhccCCH
Q 038490 240 SLALGVKEE-MVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKER--GCKPNSVTYNALISGFCKEEDF 309 (344)
Q Consensus 240 ~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~ 309 (344)
+.+.+-+.+ +.+.|.+++. .-..++..+...++.-.|.++++.+.+. +...+..|.---+..+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344444433 4456777544 3455667777777778888888888877 6555655554455566665554
No 308
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=52.29 E-value=54 Score=22.45 Aligned_cols=12 Identities=17% Similarity=0.197 Sum_probs=4.7
Q ss_pred HHHHHHHHHhhC
Q 038490 170 DAWKVFDEMVKR 181 (344)
Q Consensus 170 ~a~~~~~~~~~~ 181 (344)
.|.++++.+.+.
T Consensus 35 ta~ei~~~l~~~ 46 (145)
T 3eyy_A 35 TPDDILGEVRKT 46 (145)
T ss_dssp CHHHHHHHHHTT
T ss_pred CHHHHHHHHHhh
Confidence 334444443333
No 309
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=51.50 E-value=1.1e+02 Score=25.82 Aligned_cols=103 Identities=10% Similarity=-0.016 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCC----CCChhhHHHHHHHHhc
Q 038490 238 ELSLALGVKEEMVR--------DKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC----KPNSVTYNALISGFCK 305 (344)
Q Consensus 238 ~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~p~~~~~~~l~~~~~~ 305 (344)
..++...+++.... .++..+......++.. ..|+..++..+++.+..... .....+...+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Q ss_pred c------------------------CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhcC
Q 038490 306 E------------------------EDFEAAFTILDEMGDKGCKANPISYNVILGGLCKDG 342 (344)
Q Consensus 306 ~------------------------~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 342 (344)
. ++.+.|+.++.+|.+.|..|....-..+..+...-|
T Consensus 244 ~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 244 RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp CCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
No 310
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=51.39 E-value=56 Score=22.37 Aligned_cols=64 Identities=8% Similarity=0.030 Sum_probs=37.6
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCc
Q 038490 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276 (344)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 276 (344)
.+.++..|++++..-. .++..+...+ .-.|.++++.+.+.++..+..|.---+..+...|-+.+
T Consensus 7 ~~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 7 KSDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 3445556666665422 3334444445 55677777777777666666666556666666665543
No 311
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=51.14 E-value=91 Score=24.79 Aligned_cols=133 Identities=8% Similarity=-0.052 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHH----HHHHHhhCCCCcCHhhHHHHHHH
Q 038490 121 FNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWK----VFDEMVKRRLQPTLVTFGTLIYG 196 (344)
Q Consensus 121 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~~ 196 (344)
|.++..-|.+.+++++|.+++..-. ..+.+.|+...|-+ +++-..+.+.+++......++..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga--------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA--------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3444445666777777777664432 22333444433333 34445555666666666666655
Q ss_pred HHhhchHH-HHHHHHHHHH----HhcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 038490 197 LCLELRVD-EALKLKEDIM----RVYN-VKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFK 270 (344)
Q Consensus 197 ~~~~~~~~-~a~~~~~~~~----~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 270 (344)
+..-..-+ .-.+++++++ +..+ ..-++.....+...|.+.|++.+|+..|- .+-.-+...+..++.-+..
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHH
Confidence 44321100 0112222221 1111 23467788888888888888888877653 1111134455555444444
Q ss_pred c
Q 038490 271 A 271 (344)
Q Consensus 271 ~ 271 (344)
.
T Consensus 178 ~ 178 (312)
T 2wpv_A 178 Q 178 (312)
T ss_dssp H
T ss_pred h
Confidence 3
No 312
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=49.89 E-value=19 Score=20.24 Aligned_cols=29 Identities=28% Similarity=0.275 Sum_probs=13.3
Q ss_pred hHHHHHHHHHhhCCCCcCHhhHHHHHHHH
Q 038490 169 EDAWKVFDEMVKRRLQPTLVTFGTLIYGL 197 (344)
Q Consensus 169 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 197 (344)
++|++.|.+|++..-.++..||...|+.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34555555554433333444555555444
No 313
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.44 E-value=80 Score=23.62 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCC
Q 038490 240 SLALGVKEEMVRDKIEM-DAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPN 292 (344)
Q Consensus 240 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 292 (344)
+.+..+|..|...|+.- -...|......+...|++.+|..+|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 46667888888776653 345567777777778888888888888777766653
No 314
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=49.41 E-value=60 Score=22.17 Aligned_cols=65 Identities=11% Similarity=0.058 Sum_probs=45.0
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCc
Q 038490 211 EDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276 (344)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 276 (344)
.+.++..|+..+..-. .++..+...+..-.|.++++.+.+.++..+..|.---+..+...|-+.+
T Consensus 10 ~~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 10 LETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEE
Confidence 3445666777775433 3445555666677889999999888777777777777777888876543
No 315
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=49.27 E-value=62 Score=22.29 Aligned_cols=69 Identities=10% Similarity=0.030 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCc
Q 038490 207 LKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276 (344)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 276 (344)
..-+.+.++..|..++..- ..++..+...+..-.|.++++.+.+.++..+..|.---+..+...|-+.+
T Consensus 11 ~~~~~~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 11 LERLRMSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHHHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 3344455666777766443 34555666667778899999999888777787777777788888886654
No 316
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=47.71 E-value=61 Score=21.80 Aligned_cols=64 Identities=11% Similarity=0.045 Sum_probs=46.4
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCc
Q 038490 212 DIMRVYNVKPDGQVFASLIKGLCAVG-ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276 (344)
Q Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 276 (344)
+.++..|.+.+..-. .++..+...+ ..-.|.++++.+.+.++..+..|.---+..+.+.|-+.+
T Consensus 7 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 7 SELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 345666887776543 4455566665 677899999999998877888887777888888887654
No 317
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=47.66 E-value=20 Score=24.45 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 038490 262 SSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308 (344)
Q Consensus 262 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 308 (344)
..++..+...++.-.|.++++.+.+.+...+..|.---+..+...|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 34555555555666777777777766555555554444455555443
No 318
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=47.50 E-value=65 Score=22.19 Aligned_cols=10 Identities=20% Similarity=-0.037 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 038490 203 VDEALKLKED 212 (344)
Q Consensus 203 ~~~a~~~~~~ 212 (344)
.-.|.++++.
T Consensus 33 h~sa~ei~~~ 42 (150)
T 2w57_A 33 HISAEELYKK 42 (150)
T ss_dssp SEEHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 3334444444
No 319
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=46.79 E-value=1.1e+02 Score=24.33 Aligned_cols=64 Identities=17% Similarity=0.269 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC--HHHHHHHHHHHhhCCCC
Q 038490 261 YSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED--FEAAFTILDEMGDKGCK 325 (344)
Q Consensus 261 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 325 (344)
...++.-|...|+.++|.+.++++..-... .......+..++-+.++ .+....++..+.+.|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 456788888999999999999887532111 12223333344444333 35566777777765543
No 320
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=46.27 E-value=14 Score=20.84 Aligned_cols=25 Identities=16% Similarity=0.124 Sum_probs=19.5
Q ss_pred cCCchHHHHHHHHhhhcCCCCCchh
Q 038490 60 AKMFDEMQQILHQLKHDTRIVPKEI 84 (344)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~~~~~~~~ 84 (344)
.-+++.|...|..+...+.++|+..
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 4588999999999887766777653
No 321
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=44.54 E-value=67 Score=21.43 Aligned_cols=49 Identities=10% Similarity=0.142 Sum_probs=33.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCc
Q 038490 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNE 276 (344)
Q Consensus 228 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 276 (344)
.++..+...+..-.|.++++.+.+.++..+..|.--.+..+...|-+.+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEE
Confidence 4455555666677788888888777766677666666677777775543
No 322
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=42.38 E-value=91 Score=22.26 Aligned_cols=77 Identities=17% Similarity=0.132 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHH
Q 038490 221 PDGQVFASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALI 300 (344)
Q Consensus 221 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 300 (344)
++..+-...+.++.+.++.+ +...+..+... ++..+-...+.++...|. .++...+..+... ++...-...+
T Consensus 119 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~ 190 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAV 190 (201)
T ss_dssp SSHHHHHHHHHHHHHHTCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHH
Confidence 44444445555555555433 33333333332 355555556666666654 3455555555543 3444444444
Q ss_pred HHHhc
Q 038490 301 SGFCK 305 (344)
Q Consensus 301 ~~~~~ 305 (344)
.++.+
T Consensus 191 ~aL~~ 195 (201)
T 3ltj_A 191 NYLET 195 (201)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 323
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=42.17 E-value=1.9e+02 Score=27.37 Aligned_cols=108 Identities=12% Similarity=0.021 Sum_probs=68.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCC------------------
Q 038490 229 LIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCK------------------ 290 (344)
Q Consensus 229 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------------ 290 (344)
++..+...|..+-+.++. . ..+-++..--.+..+|...|++++|...|++.-. |+.
T Consensus 816 l~~~L~~~~~~~~a~eL~----~-~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----G-WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----G-GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHH----h-hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 444455566665544322 2 2233554445678889999999999999986431 111
Q ss_pred --C---ChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCh----hhHHHHHHHHhhcC
Q 038490 291 --P---NSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANP----ISYNVILGGLCKDG 342 (344)
Q Consensus 291 --p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~g 342 (344)
+ ...-|..++..+-+.+.++.+.++-+..++.--.-|. ..|..++++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0 1124678888889999999999998888764211122 35778888777655
No 324
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=41.99 E-value=1.3e+02 Score=24.10 Aligned_cols=25 Identities=8% Similarity=0.135 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHh
Q 038490 121 FNTLLNPKLTCGKLDRMKELFQIME 145 (344)
Q Consensus 121 ~~~l~~~~~~~~~~~~a~~~~~~~~ 145 (344)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4556666666777777776666664
No 325
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=41.27 E-value=34 Score=22.89 Aligned_cols=46 Identities=11% Similarity=0.080 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 038490 263 SLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEED 308 (344)
Q Consensus 263 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 308 (344)
.++..+...+..-.|.++++.+.+.+...+..|.--.+..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4556666666677888888888777655566555555556655554
No 326
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=40.80 E-value=51 Score=22.37 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=35.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcC
Q 038490 228 SLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKN 275 (344)
Q Consensus 228 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 275 (344)
.++..+...++.-.|.++++.+.+.++..+..|.---+..+...|-+.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 445555566667788999999988877778777777777788877553
No 327
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=39.48 E-value=79 Score=22.42 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=8.3
Q ss_pred cccCCchHHhhhhcC
Q 038490 13 RLQKDPKLALQLFKN 27 (344)
Q Consensus 13 ~~~~~~~~A~~~~~~ 27 (344)
...|+.+....++..
T Consensus 13 ~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 13 ANQRDTKKVKEILQD 27 (201)
T ss_dssp HHTTCHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHc
Confidence 345566666655544
No 328
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=39.23 E-value=1.8e+02 Score=24.77 Aligned_cols=84 Identities=11% Similarity=0.050 Sum_probs=57.7
Q ss_pred cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHH
Q 038490 96 ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVF 175 (344)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 175 (344)
..+.+-|.++. .+.|++--...|..-.+.+...|++++|.++-....+....+..|.+.+-.+=..-|+..-.+.+|
T Consensus 342 l~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 342 LQNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp TCCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred cCCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 46666665554 455666667778777888899999999999888776654466666655555444556666667777
Q ss_pred HHHhhCC
Q 038490 176 DEMVKRR 182 (344)
Q Consensus 176 ~~~~~~~ 182 (344)
.-+.+.|
T Consensus 419 ~~Ll~~g 425 (494)
T 1bpo_A 419 GILLDQG 425 (494)
T ss_dssp HHHHHHS
T ss_pred HHHhccC
Confidence 7766664
No 329
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=39.08 E-value=1.2e+02 Score=22.60 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHhhC
Q 038490 168 LEDAWKVFDEMVKR 181 (344)
Q Consensus 168 ~~~a~~~~~~~~~~ 181 (344)
++.|+.+|+.+.+.
T Consensus 88 LESAl~v~~~I~~e 101 (235)
T 3bu8_A 88 LESAINVLEMIKTE 101 (235)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 45666666666554
No 330
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=38.97 E-value=63 Score=23.69 Aligned_cols=19 Identities=0% Similarity=-0.183 Sum_probs=9.3
Q ss_pred HHHhccCCHHHHHHHHHHH
Q 038490 301 SGFCKEEDFEAAFTILDEM 319 (344)
Q Consensus 301 ~~~~~~~~~~~a~~~~~~~ 319 (344)
....+.|+.+-+..+++..
T Consensus 215 ~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 215 DLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHcCcHHHHHHHHHhh
Confidence 3444556655554444433
No 331
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=38.20 E-value=58 Score=18.76 Aligned_cols=45 Identities=7% Similarity=0.043 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038490 85 IFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLT 130 (344)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 130 (344)
.++.++..+++..-.+.++-.+++..+.| ..+...|..-++..++
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 35566677777777777777777777777 5666666655555544
No 332
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=38.01 E-value=61 Score=19.44 Aligned_cols=35 Identities=3% Similarity=0.022 Sum_probs=25.7
Q ss_pred CCCCCcchhhHHHHHHHHHhcCCchHHHHHHHHhh
Q 038490 40 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 74 (344)
Q Consensus 40 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 74 (344)
++..+|++.+|+-+.+.+.+..-..++..+.+.+.
T Consensus 29 IPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 29 IPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp SSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred CCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46678899999988887777666666666666554
No 333
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=37.61 E-value=1.2e+02 Score=22.13 Aligned_cols=19 Identities=11% Similarity=-0.060 Sum_probs=11.3
Q ss_pred HHHHHhcccHHHHHHHHHH
Q 038490 90 IGFYGRARLLERALQMFDE 108 (344)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~ 108 (344)
+...+..|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4444566677666666654
No 334
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=37.40 E-value=1.4e+02 Score=22.81 Aligned_cols=232 Identities=11% Similarity=0.018 Sum_probs=117.5
Q ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHH-HhccCCCCcccH
Q 038490 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKL----DRMKELFQI-MEKYVSPDACSY 155 (344)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~-~~~~~~~~~~~~ 155 (344)
++..+-...+.++...+.. .+...+..+.. .++..+-...+.++...|.. .....++.. +.. .++...-
T Consensus 35 ~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~vr 108 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQ-DAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACVR 108 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCH-HHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHHH
T ss_pred CCHHHHHHHHHHHHccCCc-hHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHHH
Confidence 3444444555566665643 34444444443 34555555566666665532 222233322 111 1444444
Q ss_pred HHHHHHHHhhCC-----hhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 156 NILIHGCVVSRR-----LEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230 (344)
Q Consensus 156 ~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 230 (344)
...+.++...+. ...+...+..+... ++...-...+.++...|+. .+...+..+++ .++..+-...+
T Consensus 109 ~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d---~~~~vR~~a~~aL~~~~~~-~~~~~L~~~l~----d~~~~vr~~a~ 180 (280)
T 1oyz_A 109 ATAIESTAQRCKKNPIYSPKIVEQSQITAFD---KSTNVRRATAFAISVINDK-ATIPLLINLLK----DPNGDVRNWAA 180 (280)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHTTC---SCHHHHHHHHHHHHTC----CCHHHHHHHHT----CSSHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcccHHHHHHHHHHhhC---CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHc----CCCHHHHHHHH
Confidence 555555555441 23455555554433 4555555556666666653 24444444443 35555555556
Q ss_pred HHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCH
Q 038490 231 KGLCAVG-ELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKEEDF 309 (344)
Q Consensus 231 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 309 (344)
.++...+ +...+...+..+.. .++..+-...+.++.+.|+.. +...+..+... |+ .-...+.++.+.|+.
T Consensus 181 ~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~-~~~~L~~~l~d---~~--vr~~a~~aL~~i~~~ 251 (280)
T 1oyz_A 181 FAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKR-VLSVLCDELKK---NT--VYDDIIEAAGELGDK 251 (280)
T ss_dssp HHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGG-GHHHHHHHHTS---SS--CCHHHHHHHHHHCCG
T ss_pred HHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHh-hHHHHHHHhcC---cc--HHHHHHHHHHhcCch
Confidence 6666655 23445555555543 346777777778888888654 44444444432 33 233456667777764
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 038490 310 EAAFTILDEMGDKGCKANPISYNVILGGL 338 (344)
Q Consensus 310 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 338 (344)
.+...+.++.+. .++.......+.++
T Consensus 252 -~~~~~L~~~l~~--~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 252 -TLLPVLDTMLYK--FDDNEIITSAIDKL 277 (280)
T ss_dssp -GGHHHHHHHHTT--SSCCHHHHHHHHHH
T ss_pred -hhhHHHHHHHhc--CCCcHHHHHHHHHh
Confidence 566666666643 23444455555544
No 335
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=35.62 E-value=1.3e+02 Score=22.20 Aligned_cols=76 Identities=8% Similarity=-0.066 Sum_probs=45.8
Q ss_pred CcccHHHHHHHHH---hhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhch-----HHHHHHHHHHHHHhcCCCCC
Q 038490 151 DACSYNILIHGCV---VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR-----VDEALKLKEDIMRVYNVKPD 222 (344)
Q Consensus 151 ~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~ 222 (344)
+...+.-+|+++. +..+.+.|+-++-+|++.|-.|.-..-..++.+.-.-|. ...|...++.. +.-|.+..
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~-~~iG~PE~ 109 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAF-DRVGFPEG 109 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHH-HHHCTTTT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH-HHhCCCHH
Confidence 4445555666664 457899999999999999887776666666666555443 33444444442 23365554
Q ss_pred HHHHH
Q 038490 223 GQVFA 227 (344)
Q Consensus 223 ~~~~~ 227 (344)
.....
T Consensus 110 ~i~La 114 (213)
T 3ctd_A 110 LFFLS 114 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 336
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=33.09 E-value=1.4e+02 Score=21.69 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=26.8
Q ss_pred HHHHHhcCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhcccHHHHHHHH
Q 038490 54 ITKLGRAKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARLLERALQMF 106 (344)
Q Consensus 54 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 106 (344)
+...++.|+.+....++..-.... ..++..-.+ .+...+..|+.+-+..++
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t-~L~~A~~~g~~~~v~~Ll 60 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLA-TRTDQDSRT-ALHWACSAGHTEIVEFLL 60 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGG-GCCCTTSCC-HHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhh-hcCCCCCCC-HHHHHHHcCcHHHHHHHH
Confidence 556677899998888887643210 112222222 233344566665444443
No 337
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.98 E-value=2.4e+02 Score=24.40 Aligned_cols=62 Identities=13% Similarity=0.002 Sum_probs=36.4
Q ss_pred HhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCC----H--HHHH-HHHHHHHhcCChHHHHHHHHHHHHC
Q 038490 187 LVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPD----G--QVFA-SLIKGLCAVGELSLALGVKEEMVRD 252 (344)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~--~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (344)
...++.+++.|...+.++.|..+..+.. ++.. . ..|. .+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3456677777777777777777776631 1211 1 1121 2234455667777777777776654
No 338
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.77 E-value=79 Score=18.73 Aligned_cols=35 Identities=11% Similarity=0.063 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 038490 239 LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGR 273 (344)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 273 (344)
.-.+.++++.+.+.++..+..|..-.+..+.+.|-
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 33445555555554444444444444444444443
No 339
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=32.21 E-value=26 Score=26.57 Aligned_cols=21 Identities=10% Similarity=-0.149 Sum_probs=12.5
Q ss_pred HHHhccCCHHHHHHHHHHHhh
Q 038490 301 SGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 301 ~~~~~~~~~~~a~~~~~~~~~ 321 (344)
...++.|+.+-+..++++-..
T Consensus 230 ~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 230 MMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhCCC
Confidence 334556777766666665543
No 340
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.12 E-value=1.3e+02 Score=20.95 Aligned_cols=47 Identities=15% Similarity=0.067 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCC
Q 038490 241 LALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERGC 289 (344)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 289 (344)
....+++.+.+.|.--|..--...+....+.| .....+-.++...|+
T Consensus 48 ~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI 94 (159)
T 3c1d_A 48 DYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGI 94 (159)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCC
Confidence 33444444444444422222233333333322 233444444444444
No 341
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.85 E-value=1.3e+02 Score=21.08 Aligned_cols=52 Identities=8% Similarity=-0.054 Sum_probs=31.9
Q ss_pred hhCChhHHHHHHHHHhhCCCCc--CHhhHHHHHH-H-----HHhhchHHHHHHHHHHHHH
Q 038490 164 VSRRLEDAWKVFDEMVKRRLQP--TLVTFGTLIY-G-----LCLELRVDEALKLKEDIMR 215 (344)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 215 (344)
..|++-+|-++++..-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477777777777776654444 4445555555 2 1345777777777776654
No 342
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=30.48 E-value=1.6e+02 Score=21.46 Aligned_cols=20 Identities=5% Similarity=-0.056 Sum_probs=9.3
Q ss_pred HhcCChHHHHHHHHHHHHCC
Q 038490 234 CAVGELSLALGVKEEMVRDK 253 (344)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~ 253 (344)
+..|+.+-+..+++.+.+.|
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhcC
Confidence 34445544444444444443
No 343
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=30.20 E-value=1.5e+02 Score=21.14 Aligned_cols=50 Identities=8% Similarity=0.019 Sum_probs=38.1
Q ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038490 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTC 131 (344)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 131 (344)
|....++.++..++...-.+.++-.+.+....| ..+..+|..-++.+++.
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQ 158 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 334567888888888888888888888888888 67777777777666653
No 344
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.92 E-value=1.4e+02 Score=20.89 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=27.8
Q ss_pred ccHHHHHHHHHHHHhcCCCC--CHHHHHHHHH-H-----HHhcCChHHHHHHHHHHhc
Q 038490 97 RLLERALQMFDEMSSFNVQM--TVKFFNTLLN-P-----KLTCGKLDRMKELFQIMEK 146 (344)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 146 (344)
|++-+|.++++.+=...-.+ ....|..||+ + ..+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666666665443233 3445555555 2 2345677777776666543
No 345
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=28.78 E-value=2.5e+02 Score=23.28 Aligned_cols=165 Identities=7% Similarity=-0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCC---hhHHHHHHHHHhhCCCC--cCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038490 156 NILIHGCVVSRR---LEDAWKVFDEMVKRRLQ--PTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLI 230 (344)
Q Consensus 156 ~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 230 (344)
..++...|..|+ .+.|.+.|+.....+.. .++..-..+...-.+. ...|+.+.+...-..+..--..++
T Consensus 201 ~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~~------~~~~~~l~~~y~~s~~~~ek~~ll 274 (419)
T 3rjo_A 201 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQS------TEGWDFLYSKYQFSLSSTEKSQIE 274 (419)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTTS------HHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeCC------HHHHHHHHHHHhcCCCHHHHHHHH
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHH---HHHHcCCCCChhhHHHHHHHHhccC
Q 038490 231 KGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILK---EMKERGCKPNSVTYNALISGFCKEE 307 (344)
Q Consensus 231 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~---~~~~~~~~p~~~~~~~l~~~~~~~~ 307 (344)
.+++...+.....++++......+-........+.......-..+.|.+.+. +.....+.++...+..++......-
T Consensus 275 ~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~~~~~~~~~~~~i~~~~~~~ 354 (419)
T 3rjo_A 275 FALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQF 354 (419)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHHHHHHHHTSTTTHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTTTC
T ss_pred HHcCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhCcCchhHHHHHHHHhhcC
Q ss_pred CHHHHHHHHHHHhhCCCCC
Q 038490 308 DFEAAFTILDEMGDKGCKA 326 (344)
Q Consensus 308 ~~~~a~~~~~~~~~~~~~p 326 (344)
.-++-.+-++...+..-.+
T Consensus 355 ~t~~~l~e~~~Ff~~~~~~ 373 (419)
T 3rjo_A 355 STRTRLEEVKGFFSSLKEN 373 (419)
T ss_dssp CSHHHHHHHHHHHHTTTTC
T ss_pred CCHHHHHHHHHHHHhCccc
No 346
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.21 E-value=1.9e+02 Score=21.26 Aligned_cols=81 Identities=9% Similarity=0.040 Sum_probs=46.3
Q ss_pred ccHHHHHHHHH---hhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhch-----HHHHHHHHHHHHHhcCCCCCHH
Q 038490 153 CSYNILIHGCV---VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELR-----VDEALKLKEDIMRVYNVKPDGQ 224 (344)
Q Consensus 153 ~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~ 224 (344)
..+.-+|+++. +..+.+.|+-++-+|.+.| .|.-..-..++.+...-|. ...|...++. .+.-|.+....
T Consensus 12 d~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a-~~~iG~PE~~i 89 (204)
T 2r9g_A 12 DAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLA-AEKLGLPEARI 89 (204)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHH-HHHHCTTTTHH
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH-HHHhCCCHHHH
Confidence 34444566654 4578999999999999998 6666655666655555443 2334444444 23336555444
Q ss_pred HHHHHHHHHHh
Q 038490 225 VFASLIKGLCA 235 (344)
Q Consensus 225 ~~~~l~~~~~~ 235 (344)
.....+-.++.
T Consensus 90 ~LaqaviyLA~ 100 (204)
T 2r9g_A 90 PLADVVVDLCL 100 (204)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 44333333333
No 347
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=27.10 E-value=2.6e+02 Score=23.65 Aligned_cols=30 Identities=7% Similarity=0.060 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 038490 225 VFASLIKGLCAVGELSLALGVKEEMVRDKI 254 (344)
Q Consensus 225 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 254 (344)
..+.+...|.+.++...+..+++.+...+.
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~ 207 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSM 207 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCC
Confidence 346667777777777777777777776554
No 348
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=26.83 E-value=92 Score=20.89 Aligned_cols=10 Identities=0% Similarity=0.105 Sum_probs=3.8
Q ss_pred ccHHHHHHHH
Q 038490 97 RLLERALQMF 106 (344)
Q Consensus 97 ~~~~~a~~~~ 106 (344)
|+.+.+..++
T Consensus 13 g~~~~v~~ll 22 (156)
T 1bd8_A 13 GDVQEVRRLL 22 (156)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 3333333333
No 349
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=26.82 E-value=1.7e+02 Score=20.71 Aligned_cols=18 Identities=0% Similarity=0.016 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHCCCCCC
Q 038490 240 SLALGVKEEMVRDKIEMD 257 (344)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~ 257 (344)
....++.+.+.+.|..++
T Consensus 91 ~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 91 TGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHHHTTCCSS
T ss_pred hhHHHHHHHHHHCCCCCC
Confidence 334455555555555544
No 350
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=26.54 E-value=2e+02 Score=21.42 Aligned_cols=48 Identities=10% Similarity=0.286 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHhccCCCCccc--------HHHHHHHHHhhCChhHHHHHHHHHhhC
Q 038490 134 LDRMKELFQIMEKYVSPDACS--------YNILIHGCVVSRRLEDAWKVFDEMVKR 181 (344)
Q Consensus 134 ~~~a~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~~~ 181 (344)
++.|+.+|+.+....+.+... -...+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 566777777776654321111 123345677778888888888777654
No 351
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=26.15 E-value=1.4e+02 Score=19.47 Aligned_cols=26 Identities=27% Similarity=0.192 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHcCCcCcHHHHHHHH
Q 038490 258 AGIYSSLISALFKAGRKNEFPAILKEM 284 (344)
Q Consensus 258 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 284 (344)
+.++...+....+.|-.++. +.|..|
T Consensus 53 ~~s~rd~~r~a~~~glI~~~-~~w~~m 78 (119)
T 1wty_A 53 ARSPRAAIRGAFQVGLLPED-PFWLEM 78 (119)
T ss_dssp CSSHHHHHHHHHHHTSSCCC-HHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCcH-HHHHHH
Confidence 44455555555555555444 344444
No 352
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.86 E-value=1.9e+02 Score=20.96 Aligned_cols=84 Identities=8% Similarity=0.015 Sum_probs=43.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCcCcHHHHHHHHHHcCCCC---------ChhhHHHHHH
Q 038490 233 LCAVGELSLALGVKEEMVRDKIEMDAGI--YSSLISALFKAGRKNEFPAILKEMKERGCKP---------NSVTYNALIS 301 (344)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p---------~~~~~~~l~~ 301 (344)
.+..|+.+-+. .+.+.|..++... -...+...+..|+.+-+..+++.+.+.|..+ |....+. +.
T Consensus 128 A~~~~~~~~v~----~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~ 202 (232)
T 2rfa_A 128 AACVGSEEIVR----LLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FK 202 (232)
T ss_dssp HHHHTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HH
T ss_pred HHHcCCHHHHH----HHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HH
Confidence 34556654433 3344454433211 1123344556677777777778887776543 2222333 34
Q ss_pred HHhccCCHHHHHHHHHHHhh
Q 038490 302 GFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 302 ~~~~~~~~~~a~~~~~~~~~ 321 (344)
..++.|+.+-+..+++.-..
T Consensus 203 ~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 203 LAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCcc
Confidence 44566777766666655443
No 353
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=25.75 E-value=1.9e+02 Score=21.00 Aligned_cols=88 Identities=9% Similarity=-0.016 Sum_probs=44.2
Q ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCC
Q 038490 90 IGFYGRARLLERALQMFDEMSSFNVQMTVK--FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRR 167 (344)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (344)
+...+..|+.+.+..+++.+.+.|..++.. .-.+.+...+..|+.+-+..+++.-......+..-.+. +...+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcCC
Confidence 344556788888877777666555433321 11233444556677665555544221111122222333 334445677
Q ss_pred hhHHHHHHHHH
Q 038490 168 LEDAWKVFDEM 178 (344)
Q Consensus 168 ~~~a~~~~~~~ 178 (344)
.+-+..+++..
T Consensus 92 ~~~~~~Ll~~~ 102 (241)
T 1k1a_A 92 PTCLRALLDSA 102 (241)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHcC
Confidence 76665555543
No 354
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=25.39 E-value=1.9e+02 Score=20.94 Aligned_cols=13 Identities=0% Similarity=-0.330 Sum_probs=5.8
Q ss_pred HHHhccCCHHHHH
Q 038490 301 SGFCKEEDFEAAF 313 (344)
Q Consensus 301 ~~~~~~~~~~~a~ 313 (344)
...+..|+.+-+.
T Consensus 182 ~~A~~~~~~~~v~ 194 (240)
T 3eu9_A 182 HWAVLAGNTTVIS 194 (240)
T ss_dssp HHHHHHTCHHHHH
T ss_pred HHHHHcCCHHHHH
Confidence 3334455554333
No 355
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=25.19 E-value=47 Score=22.00 Aligned_cols=52 Identities=6% Similarity=0.119 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHH
Q 038490 226 FASLIKGLCAVGELSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAI 280 (344)
Q Consensus 226 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 280 (344)
|.-.|...+..++.+-|.++++-..+.| +...|.+.+..|...=+++-++++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 4445566667777888888888777765 566677777777666666655544
No 356
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=25.13 E-value=2e+02 Score=21.01 Aligned_cols=45 Identities=13% Similarity=-0.052 Sum_probs=29.3
Q ss_pred HHHHHHH---hhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhc
Q 038490 157 ILIHGCV---VSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLEL 201 (344)
Q Consensus 157 ~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 201 (344)
-+|+++. +..+.+.|+-++-+|++.|-.|.-..-..++.+.-.-|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3455553 45788888888888888887766655555555544433
No 357
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=25.09 E-value=2.4e+02 Score=21.84 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=17.3
Q ss_pred HHHHHHHHcCCcCcHHHHHHHHHH-cCCCC
Q 038490 263 SLISALFKAGRKNEFPAILKEMKE-RGCKP 291 (344)
Q Consensus 263 ~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p 291 (344)
.++.... .|+.++|.+++.++.. .|..|
T Consensus 233 ~l~~~~~-~~~~~~a~~~l~~l~~~~g~~~ 261 (319)
T 2chq_A 233 ELIQTAL-KGNFMEARELLDRLMVEYGMSG 261 (319)
T ss_dssp HHHHHHH-HTCHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHH-hCCHHHHHHHHHHHHHHcCCCH
Confidence 3444443 3677778888877776 66543
No 358
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=24.81 E-value=1.7e+02 Score=20.59 Aligned_cols=24 Identities=4% Similarity=0.112 Sum_probs=14.1
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHh
Q 038490 156 NILIHGCVVSRRLEDAWKVFDEMV 179 (344)
Q Consensus 156 ~~l~~~~~~~~~~~~a~~~~~~~~ 179 (344)
..++.-|...|+.++|...++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555666666666666666654
No 359
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=24.67 E-value=1e+02 Score=17.29 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=17.3
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCC
Q 038490 304 CKEEDFEAAFTILDEMGDKGCKAN 327 (344)
Q Consensus 304 ~~~~~~~~a~~~~~~~~~~~~~p~ 327 (344)
...|+.+.|...+-+|...+..|+
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 456778888888888776666665
No 360
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.96 E-value=1.6e+02 Score=19.38 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=17.8
Q ss_pred HHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHH
Q 038490 175 FDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIM 214 (344)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 214 (344)
|+.+....+.|+...-..-+..+...++++.|..+...++
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333443333322222333445556666665555544
No 361
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=23.83 E-value=88 Score=23.40 Aligned_cols=14 Identities=36% Similarity=0.332 Sum_probs=6.3
Q ss_pred hccCCHHHHHHHHH
Q 038490 304 CKEEDFEAAFTILD 317 (344)
Q Consensus 304 ~~~~~~~~a~~~~~ 317 (344)
+..|+.+-+..+++
T Consensus 229 ~~~g~~~~v~~Ll~ 242 (256)
T 2etb_A 229 AKEGKIEIFRHILQ 242 (256)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHh
Confidence 34455444444444
No 362
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=23.41 E-value=1.4e+02 Score=19.91 Aligned_cols=20 Identities=15% Similarity=0.307 Sum_probs=14.9
Q ss_pred HHHHHHhcCCchHHHHHHHH
Q 038490 53 IITKLGRAKMFDEMQQILHQ 72 (344)
Q Consensus 53 l~~~~~~~~~~~~a~~~~~~ 72 (344)
.+...+..|+.+.+..+++.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHh
Confidence 34456677898888888877
No 363
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=23.08 E-value=2.6e+02 Score=21.54 Aligned_cols=47 Identities=13% Similarity=0.160 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHH
Q 038490 238 ELSLALGVKEEMVRD-KIEMDAGIYSSLISALFKAGRKNEFPAILKEM 284 (344)
Q Consensus 238 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 284 (344)
++.....++..|... .-.|+......++++|.+.-+-.+|.+.++..
T Consensus 188 RF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~ 235 (268)
T 2fv2_A 188 RFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 235 (268)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 333444444444431 22456666666666666666666666655543
No 364
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=23.02 E-value=2.7e+02 Score=21.66 Aligned_cols=84 Identities=11% Similarity=0.076 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC------------CCCHHHHHHHHHHHHHcC
Q 038490 205 EALKLKEDIMRVYNVKPDGQVFASLIKGLCAVGELSLALGVKEEMVRDKI------------EMDAGIYSSLISALFKAG 272 (344)
Q Consensus 205 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~g 272 (344)
+...++....+..++..+......++.. ..|++..+..+++....... .+.......++.... .+
T Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~--~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~-~~ 249 (327)
T 1iqp_A 173 DIAKRLRYIAENEGLELTEEGLQAILYI--AEGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLAL-KG 249 (327)
T ss_dssp HHHHHHHHHHHTTTCEECHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCSEECHHHHHHHTTCCCHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHH-cC
Confidence 3334444433333444444444444432 24555555555554432211 112223333444333 36
Q ss_pred CcCcHHHHHHHHH-HcCCCC
Q 038490 273 RKNEFPAILKEMK-ERGCKP 291 (344)
Q Consensus 273 ~~~~a~~~~~~~~-~~~~~p 291 (344)
+++.+.+.+..+. ..|..|
T Consensus 250 ~~~~~~~~~~~ll~~~g~~~ 269 (327)
T 1iqp_A 250 NFLKAREKLREILLKQGLSG 269 (327)
T ss_dssp CHHHHHHHHHHHHHHHCCCH
T ss_pred CHHHHHHHHHHHHHHcCCCH
Confidence 7788888888777 666543
No 365
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.66 E-value=3e+02 Score=22.06 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHh
Q 038490 155 YNILIHGCVVSRRLEDAWKVFDEMV 179 (344)
Q Consensus 155 ~~~l~~~~~~~~~~~~a~~~~~~~~ 179 (344)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 5677888889999999988888874
No 366
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=22.32 E-value=2.3e+02 Score=20.80 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=10.0
Q ss_pred HHHhcCChHHHHHHHHHHh
Q 038490 127 PKLTCGKLDRMKELFQIME 145 (344)
Q Consensus 127 ~~~~~~~~~~a~~~~~~~~ 145 (344)
.|.+.|.+++|.+++++.-
T Consensus 126 VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHTTCHHHHHHHHHHHC
T ss_pred HHHHccchHHHHHHHHHHh
Confidence 3455555555555555543
No 367
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=22.13 E-value=3.8e+02 Score=23.03 Aligned_cols=68 Identities=9% Similarity=-0.075 Sum_probs=44.3
Q ss_pred cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038490 96 ARLLERALQMFDEMSSFNVQMTVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVV 164 (344)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (344)
...++.|...|....... |-+-..||.|.-.....|+.-.|.-.|-+......|-..+...+...+.+
T Consensus 165 ~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 445577888888777765 55556777777777777776666665555544444666666666666554
No 368
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.08 E-value=2.1e+02 Score=20.78 Aligned_cols=42 Identities=7% Similarity=-0.003 Sum_probs=22.1
Q ss_pred HHHHHHHcCCCCChhh--HHHHHHHHhccCCHHHHHHHHHHHhh
Q 038490 280 ILKEMKERGCKPNSVT--YNALISGFCKEEDFEAAFTILDEMGD 321 (344)
Q Consensus 280 ~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~ 321 (344)
+++.+.+.|..++... -.+-+......|+...+.++.+.+.+
T Consensus 192 ~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 192 CVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444445555443321 11233444566777777777777654
No 369
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=21.83 E-value=88 Score=18.34 Aligned_cols=28 Identities=11% Similarity=0.207 Sum_probs=12.3
Q ss_pred CcHHHHHHHHHHc-CCCCChhhHHHHHHHH
Q 038490 275 NEFPAILKEMKER-GCKPNSVTYNALISGF 303 (344)
Q Consensus 275 ~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~ 303 (344)
++|...|.+|+.. ++. ...+|...+..+
T Consensus 15 eea~~~F~~LL~e~~V~-~~~tWe~~~~~i 43 (71)
T 1uzc_A 15 EEAKQAFKELLKEKRVP-SNASWEQAMKMI 43 (71)
T ss_dssp HHHHHHHHHHHHHTTCC-TTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcC-CCCCHHHHHHHH
Confidence 4555555555433 333 223444444433
No 370
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.67 E-value=1e+02 Score=22.52 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=11.0
Q ss_pred HHHHhcCCchHHHHHHHHhh
Q 038490 55 TKLGRAKMFDEMQQILHQLK 74 (344)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~~~ 74 (344)
..|.+.|.+++|.++|++..
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHccchHHHHHHHHHHh
Confidence 34555555666666555543
No 371
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=21.58 E-value=3.3e+02 Score=22.17 Aligned_cols=186 Identities=10% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHhhCCCCcCHhhHHHHHHHHHhhchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038490 156 NILIHGCVVSRRLEDAWKVFDEMVKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDIMRVYNVKPDGQVFASLIKGLCA 235 (344)
Q Consensus 156 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (344)
..++.-|...|+.++|.+.++++..-+.--....+..+..++-+.....+....+-..+...++-+.......+...+..
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~ 95 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQ 95 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Q ss_pred cCC----hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcC-----------------------
Q 038490 236 VGE----LSLALGVKEEMVRDKIEMDAGIYSSLISALFKAGRKNEFPAILKEMKERG----------------------- 288 (344)
Q Consensus 236 ~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------------------- 288 (344)
..+ ...|..++.++...-+.-+......+...+...+...-...++..+.+..
T Consensus 96 l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~~k~~G~~~l~~l~~~sgl~l~~FlPe~ 175 (364)
T 3l6a_A 96 CPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAKLQDREWLTELFQQSKVNMQKMLPEI 175 (364)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHHHHHSCHHHHHHHHHHHTCCSGGGSCGG
T ss_pred ChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCHHHhCCcc
Q ss_pred ------------------CCCChhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhhc
Q 038490 289 ------------------CKPNSVTYNALISGFCKEEDFEAAFTILDEMGDKGCKANPISYNVILGGLCKD 341 (344)
Q Consensus 289 ------------------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 341 (344)
+.|-...-..|..........++.....+.-.+....++....++|+.+.++.
T Consensus 176 ~~~~~~~~e~~~~~~L~~l~~~~~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~fir~L~t~v~~~ 246 (364)
T 3l6a_A 176 DQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQY 246 (364)
T ss_dssp GCSHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHhCCCcccCCHHHHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHHHHHHHHHHHHHH
No 372
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=21.14 E-value=86 Score=22.35 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 038490 258 AGIYSSLISALFKAGRKNEFPAILKEMKERGCKPNSVTYNALISGFCKE 306 (344)
Q Consensus 258 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 306 (344)
...++.++..++.-.-+++++..+.+....|. .+..+|.--++.+++.
T Consensus 111 ~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 111 TDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQ 158 (174)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 34456666666666666666666666666653 2555555555555443
No 373
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.05 E-value=2.5e+02 Score=20.59 Aligned_cols=64 Identities=13% Similarity=0.046 Sum_probs=36.6
Q ss_pred HHHHHHHHh---cCCchHHHHHHHHhhhcCCCCCchhHHHHHHHHHHhccc-----HHHHHHHHHHHHhcCCCC
Q 038490 51 DLIITKLGR---AKMFDEMQQILHQLKHDTRIVPKEIIFCNVIGFYGRARL-----LERALQMFDEMSSFNVQM 116 (344)
Q Consensus 51 ~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 116 (344)
.-+|+++.+ -.+.+.|+-++-+|.+. | .|.-..-..++-+...-|. ...|...++.....|.+-
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~-G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEA-G-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-T-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 345666644 47788888888888876 5 4443333344444444333 334555666666666443
No 374
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=20.86 E-value=90 Score=23.68 Aligned_cols=18 Identities=11% Similarity=-0.014 Sum_probs=9.7
Q ss_pred HHHhccCCHHHHHHHHHH
Q 038490 301 SGFCKEEDFEAAFTILDE 318 (344)
Q Consensus 301 ~~~~~~~~~~~a~~~~~~ 318 (344)
...+..|+.+-+..+++.
T Consensus 238 ~~A~~~g~~~iv~~Ll~~ 255 (273)
T 2pnn_A 238 ALAASSGKIGVLAYILQR 255 (273)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHC
Confidence 344566776655554443
No 375
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.44 E-value=2.4e+02 Score=22.45 Aligned_cols=189 Identities=12% Similarity=0.005 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhCChhHHHHHHHHHhhCCCCcCH-hhHHHHHH
Q 038490 117 TVKFFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDACSYNILIHGCVVSRRLEDAWKVFDEMVKRRLQPTL-VTFGTLIY 195 (344)
Q Consensus 117 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~ 195 (344)
|..-++ .+...+..|+.+.+..+++.-......+..-++.| ...+..|+.+-+..+++. |..++. .-.+ .+.
T Consensus 17 d~~g~t-~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L-~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t-~L~ 89 (364)
T 3ljn_A 17 DDENME-KIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTAL-HLACKFGCVDTAKYLASV----GEVHSLWHGQK-PIH 89 (364)
T ss_dssp CHHHHH-HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHHCCHHHHHHHHHH----CCCCCCBTTBC-HHH
T ss_pred CCCCCC-HHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHH-HHHHHcCCHHHHHHHHHC----CCCccccCCCC-HHH
Confidence 444344 44455667888777777654222122333333443 444556776555444443 333333 2222 333
Q ss_pred HHHhhchHHHHHHHHHHHHHhcCCCCCH--------------------HHHHHHHHHHHhcC--ChHHHHHHHHHHHHCC
Q 038490 196 GLCLELRVDEALKLKEDIMRVYNVKPDG--------------------QVFASLIKGLCAVG--ELSLALGVKEEMVRDK 253 (344)
Q Consensus 196 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~ 253 (344)
..+..|+.+-+..+++.... .+..++. .-.+. +...+..| +.+-+.. +.+.|
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~~~v~~----Ll~~g 163 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKE-RGQMPESLLNECDEREVNEIGSHVKHCKGQTA-LHWCVGLGPEYLEMIKI----LVQLG 163 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HTCCHHHHHTCCCCCCEEEETTEEEEESCCCH-HHHHHHSCGGGHHHHHH----HHHHT
T ss_pred HHHHcCCHHHHHHHHHhccc-cCCCHHHHHhhcchHhhhhhccccCCCCCCCH-HHHHHHcCCchHHHHHH----HHHcC
Confidence 44667887777777665332 2333332 01223 33344556 5544433 33335
Q ss_pred CCCCH---HHHHHHHHHHHHcCCcCcHHHHHHHHHHcCCC-----CChhh--HHHHHHHHhccCCHHHHHHHHHHHhhCC
Q 038490 254 IEMDA---GIYSSLISALFKAGRKNEFPAILKEMKERGCK-----PNSVT--YNALISGFCKEEDFEAAFTILDEMGDKG 323 (344)
Q Consensus 254 ~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 323 (344)
..++. .-.+.|.. .+..|+. ++++.+.+.|.. ++... -.+.+...+..|+.+- .+.+.+.|
T Consensus 164 a~~~~~d~~g~t~L~~-A~~~g~~----~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g 234 (364)
T 3ljn_A 164 ASPTAKDKADETPLMR-AMEFRNR----EALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDV----AMRFVEMG 234 (364)
T ss_dssp CCTTCCCTTSCCHHHH-HHHTTCH----HHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHH----HHHHHTTT
T ss_pred CCCcccCCCCCCHHHH-HHHcCCH----HHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHH----HHHHHHcC
Confidence 44432 22333333 3445554 445555555544 33332 2345555566677653 34444556
Q ss_pred CCCC
Q 038490 324 CKAN 327 (344)
Q Consensus 324 ~~p~ 327 (344)
..++
T Consensus 235 ad~~ 238 (364)
T 3ljn_A 235 IDVN 238 (364)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 5554
No 376
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.38 E-value=3.3e+02 Score=21.63 Aligned_cols=216 Identities=12% Similarity=0.009 Sum_probs=106.9
Q ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCc-ccHHH
Q 038490 81 PKEIIFCNVIGFYGRARLLERALQMFDEMSSFNVQMTVK--FFNTLLNPKLTCGKLDRMKELFQIMEKYVSPDA-CSYNI 157 (344)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 157 (344)
.|..-.+.| ...+..|+.+.+..+++ .|..++.. .-.+.+...+..|+.+-+..+++.-.. .+. .-++
T Consensus 16 ~d~~g~t~L-~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~g~t- 86 (364)
T 3ljn_A 16 SDDENMEKI-HVAARKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV---HSLWHGQK- 86 (364)
T ss_dssp CCHHHHHHH-HHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC---CCCBTTBC-
T ss_pred cCCCCCCHH-HHHHHcCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC---ccccCCCC-
Confidence 344444444 44456788776666554 44333321 112344555667887766666554331 222 2223
Q ss_pred HHHHHHhhCChhHHHHHHHHHhhCCCCcCH--------------------hhHHHHHHHHHhhc--hHHHHHHHHHHHHH
Q 038490 158 LIHGCVVSRRLEDAWKVFDEMVKRRLQPTL--------------------VTFGTLIYGLCLEL--RVDEALKLKEDIMR 215 (344)
Q Consensus 158 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 215 (344)
.+...+..|+.+-+..+++.....|..++. .-.+.+. ..+..| +.+-+..+++.
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~~~v~~Ll~~--- 162 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALH-WCVGLGPEYLEMIKILVQL--- 162 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHH-HHHHSCGGGHHHHHHHHHH---
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHH-HHHHcCCchHHHHHHHHHc---
Confidence 344455678888887777776666666655 1133444 445566 55554444433
Q ss_pred hcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCC---CHHHHHHHHHHHHHcCCcCcHHHHHHHHHHcC
Q 038490 216 VYNVKPDG---QVFASLIKGLCAVGELSLALGVKEEMVR-DKIEM---DAGIYSSLISALFKAGRKNEFPAILKEMKERG 288 (344)
Q Consensus 216 ~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 288 (344)
|..++. .-.+. +...+..|+.+-+..+++.-.. .+..+ +..-.+.|. ..+..|+. ++++.+.+.|
T Consensus 163 --ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~----~~v~~Ll~~g 234 (364)
T 3ljn_A 163 --GASPTAKDKADETP-LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWE----DVAMRFVEMG 234 (364)
T ss_dssp --TCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCH----HHHHHHHTTT
T ss_pred --CCCCcccCCCCCCH-HHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCH----HHHHHHHHcC
Confidence 444432 22233 3344567777655555443222 00002 222223333 33455554 4556666677
Q ss_pred CCCChhh---HHHHHHHHhccCCHHHHHHHHHH
Q 038490 289 CKPNSVT---YNALISGFCKEEDFEAAFTILDE 318 (344)
Q Consensus 289 ~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~ 318 (344)
..++... .+. +...+..|+.+-+..+++.
T Consensus 235 ad~~~~d~~g~tp-L~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 235 IDVNMEDNEHTVP-LYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CCTTCCCTTSCCH-HHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCH-HHHHHHhChHHHHHHHHHc
Confidence 6655432 233 3334455776655555543
No 377
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.26 E-value=1.3e+02 Score=21.22 Aligned_cols=27 Identities=7% Similarity=0.161 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038490 225 VFASLIKGLCAVGELSLALGVKEEMVR 251 (344)
Q Consensus 225 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 251 (344)
....++.-|...++.++|...++++..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 356778888899999999999988763
No 378
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=20.15 E-value=1.1e+02 Score=18.48 Aligned_cols=31 Identities=13% Similarity=0.104 Sum_probs=14.2
Q ss_pred CcHHHHHHHHHHc-CCCCChhhHHHHHHHHhcc
Q 038490 275 NEFPAILKEMKER-GCKPNSVTYNALISGFCKE 306 (344)
Q Consensus 275 ~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~ 306 (344)
++|...|.+|+.. ++. ...+|...+.....-
T Consensus 17 eea~~~Fk~LL~e~~V~-p~~tWe~~~~~i~~D 48 (82)
T 2dod_A 17 EARMKQFKDMLLERGVS-AFSTWEKELHKIVFD 48 (82)
T ss_dssp HHHHHHHHHHHHHTTCC-SSSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCcC-CCCCHHHHHHHHccC
Confidence 4455555555433 333 224555554444433
Done!