BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038491
         (146 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HG2|A Chain A, The Structure Of A Putative Type Ii Methyltransferase From
           Anaeromyxobacter Dehalogenans.
 pdb|4HG2|B Chain B, The Structure Of A Putative Type Ii Methyltransferase From
           Anaeromyxobacter Dehalogenans
          Length = 257

 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 13/134 (9%)

Query: 18  LVTIALYWFDLPQFYKQVKWILKEPTRVIIAWTYTM----PEINESAGVVFKSFDRVDCE 73
           +   A +WFDL +F+ +++ + + P  V  A TY +    PE++     ++      D  
Sbjct: 104 IAAQAXHWFDLDRFWAELRRVAR-PGAVFAAVTYGLTRVDPEVDAVVDRLYHGLLARD-- 160

Query: 74  PFWKPQRKLLDNKYMSIDFPF----EPVDRDDNTGPFDDYFMFIRLYSAYQTAKDKSSEL 129
             W P+R  +++ Y ++ FPF     P    +   P D +  ++  +SA    + ++   
Sbjct: 161 --WPPERVHVESGYRTLPFPFPELEAPPLEIEERWPXDAFLGYLGTWSAVTAHRRRTGAD 218

Query: 130 LTNNVMEKFKFAWN 143
               +    + AW 
Sbjct: 219 PLAEIAPALRAAWG 232


>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
           In The Oxidized And Nadph Reduced State
 pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
           In The Oxidized And Nadph Reduced State
 pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
           In The Oxidized And Nadph Reduced State
 pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
           In The Oxidized And Nadph Reduced State
          Length = 491

 Score = 28.9 bits (63), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 42  PTRVIIAWTYTMPEINESAGVVFKSFDRVDCEPFWKPQRKLLDNKYMSIDFPFEPVDRD 100
           P ++++     M  + ESAG  ++ FDR      WK    + D   ++I+  +E + RD
Sbjct: 59  PKKLMVTGAQYMEHLRESAGFGWE-FDRTTLRAEWKKLIAVKDEAVLNINKSYEEMFRD 116


>pdb|3FF6|A Chain A, Human Acc2 Ct Domain With Cp-640186
 pdb|3FF6|B Chain B, Human Acc2 Ct Domain With Cp-640186
 pdb|3FF6|C Chain C, Human Acc2 Ct Domain With Cp-640186
 pdb|3FF6|D Chain D, Human Acc2 Ct Domain With Cp-640186
          Length = 760

 Score = 26.9 bits (58), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 27/67 (40%)

Query: 41  EPTRVIIAWTYTMPEINESAGVVFKSFDRVDCEPFWKPQRKLLDNKYMSIDFPFEPVDRD 100
           E    I+ W   MP+ N S   +    D +D E  + P R   D ++M    P   +   
Sbjct: 310 EGVYTILEWLSYMPKDNHSPVPIITPTDPIDREIEFLPSRAPYDPRWMLAGRPHPTLKGT 369

Query: 101 DNTGPFD 107
             +G FD
Sbjct: 370 WQSGFFD 376


>pdb|3TDC|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 2
          Length = 762

 Score = 26.9 bits (58), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 27/67 (40%)

Query: 41  EPTRVIIAWTYTMPEINESAGVVFKSFDRVDCEPFWKPQRKLLDNKYMSIDFPFEPVDRD 100
           E    I+ W   MP+ N S   +    D +D E  + P R   D ++M    P   +   
Sbjct: 312 EGVYTILEWLSYMPKDNHSPVPIITPTDPIDREIEFLPSRAPYDPRWMLAGRPHPTLKGT 371

Query: 101 DNTGPFD 107
             +G FD
Sbjct: 372 WQSGFFD 378


>pdb|2X24|A Chain A, Bovine Acc2 Ct Domain In Complex With Inhibitor
 pdb|2X24|B Chain B, Bovine Acc2 Ct Domain In Complex With Inhibitor
          Length = 793

 Score = 26.9 bits (58), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%)

Query: 46  IIAWTYTMPEINESAGVVFKSFDRVDCEPFWKPQRKLLDNKYMSIDFPFEPVDRDDNTGP 105
           I+ W   MP+ N S   V    D +D E  ++P R   D +++    P   +     +G 
Sbjct: 341 ILEWLSYMPKDNRSPVPVVTPKDPIDREIEFQPSRGPYDPRWLLAGRPHPTLKGSWQSGF 400

Query: 106 FD 107
           FD
Sbjct: 401 FD 402


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,636,570
Number of Sequences: 62578
Number of extensions: 191282
Number of successful extensions: 276
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 7
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)