BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038491
(146 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55EX9|Y8948_DICDI Putative methyltransferase DDB_G0268948 OS=Dictyostelium discoideum
GN=DDB_G0268948 PE=1 SV=2
Length = 263
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 6/102 (5%)
Query: 3 ITELEQIVATQSSEDLVTIA--LYWFDLPQFYKQVKWILKEPTRVIIAWTYTMPEI--NE 58
++ E+I S DL+T+A +WF+LP FY++ K +L+E +II W+Y + +I N
Sbjct: 92 LSAAEKIDLPSGSVDLITVAQAAHWFNLPVFYEESKRLLRENGSLII-WSYGLMKITNNN 150
Query: 59 SAGVVF-KSFDRVDCEPFWKPQRKLLDNKYMSIDFPFEPVDR 99
A VV K + + +W P+RK +D++Y+ I FE R
Sbjct: 151 DAQVVHEKHYYETIGDQYWAPERKYIDDEYVDIKPSFENTTR 192
>sp|P36251|RPOB_LIBAS DNA-directed RNA polymerase subunit beta (Fragment) OS=Liberibacter
asiaticus GN=rpoB PE=3 SV=1
Length = 178
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 31/57 (54%)
Query: 1 MFITELEQIVATQSSEDLVTIALYWFDLPQFYKQVKWILKEPTRVIIAWTYTMPEIN 57
+ + ++++ +S +D+ ++Y DLP K +++K R++++ + P I+
Sbjct: 108 LIVFDVDEFTGAKSIKDIKEQSIYMGDLPLMTKDGTFVIKGTQRIVVSQLHRSPGIH 164
>sp|Q8Z8B8|NADA_SALTI Quinolinate synthase A OS=Salmonella typhi GN=nadA PE=3 SV=1
Length = 347
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 27 DLPQFYKQ-VKWILKEPTRVIIAWTYTMPEIN----ESAGVVFKSFD 68
D QFY++ +K +LKE V++A YT PEI E+ G + S +
Sbjct: 24 DEKQFYREKIKRLLKERNAVMVAHYYTDPEIQQLAEETGGCISDSLE 70
>sp|B5BC59|NADA_SALPK Quinolinate synthase A OS=Salmonella paratyphi A (strain
AKU_12601) GN=nadA PE=3 SV=1
Length = 347
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 27 DLPQFYKQ-VKWILKEPTRVIIAWTYTMPEIN----ESAGVVFKSFD 68
D QFY++ +K +LKE V++A YT PEI E+ G + S +
Sbjct: 24 DEKQFYREKIKRLLKERNAVMVAHYYTDPEIQQLAEETGGCISDSLE 70
>sp|Q5PCN5|NADA_SALPA Quinolinate synthase A OS=Salmonella paratyphi A (strain ATCC
9150 / SARB42) GN=nadA PE=3 SV=1
Length = 347
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 27 DLPQFYKQ-VKWILKEPTRVIIAWTYTMPEIN----ESAGVVFKSFD 68
D QFY++ +K +LKE V++A YT PEI E+ G + S +
Sbjct: 24 DEKQFYREKIKRLLKERNAVMVAHYYTDPEIQQLAEETGGCISDSLE 70
>sp|B4SZF9|NADA_SALNS Quinolinate synthase A OS=Salmonella newport (strain SL254)
GN=nadA PE=3 SV=1
Length = 347
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 27 DLPQFYKQ-VKWILKEPTRVIIAWTYTMPEIN----ESAGVVFKSFD 68
D QFY++ +K +LKE V++A YT PEI E+ G + S +
Sbjct: 24 DEKQFYREKIKRLLKERNAVMVAHYYTDPEIQQLAEETGGCISDSLE 70
>sp|P24519|NADA_SALTY Quinolinate synthase A OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=nadA PE=2 SV=2
Length = 347
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 27 DLPQFYKQ-VKWILKEPTRVIIAWTYTMPEIN----ESAGVVFKSFD 68
D QFY++ +K +LKE V++A YT PEI E+ G + S +
Sbjct: 24 DEKQFYREKIKRLLKERNAVMVAHYYTDPEIQQLAEETGGCISDSLE 70
>sp|B4TC11|NADA_SALHS Quinolinate synthase A OS=Salmonella heidelberg (strain SL476)
GN=nadA PE=3 SV=1
Length = 347
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 27 DLPQFYKQ-VKWILKEPTRVIIAWTYTMPEIN----ESAGVVFKSFD 68
D QFY++ +K +LKE V++A YT PEI E+ G + S +
Sbjct: 24 DEKQFYREKIKRLLKERNAVMVAHYYTDPEIQQLAEETGGCISDSLE 70
>sp|Q57RK0|NADA_SALCH Quinolinate synthase A OS=Salmonella choleraesuis (strain SC-B67)
GN=nadA PE=3 SV=1
Length = 347
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 27 DLPQFYKQ-VKWILKEPTRVIIAWTYTMPEIN----ESAGVVFKSFD 68
D QFY++ +K +LKE V++A YT PEI E+ G + S +
Sbjct: 24 DEKQFYREKIKRLLKERNAVMVAHYYTDPEIQQLAEETGGCISDSLE 70
>sp|B5F034|NADA_SALA4 Quinolinate synthase A OS=Salmonella agona (strain SL483) GN=nadA
PE=3 SV=1
Length = 347
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 27 DLPQFYKQ-VKWILKEPTRVIIAWTYTMPEIN----ESAGVVFKSFD 68
D QFY++ +K +LKE V++A YT PEI E+ G + S +
Sbjct: 24 DEKQFYREKIKRLLKERNAVMVAHYYTDPEIQQLAEETGGCISDSLE 70
>sp|B5R6A2|NADA_SALG2 Quinolinate synthase A OS=Salmonella gallinarum (strain 287/91 /
NCTC 13346) GN=nadA PE=3 SV=1
Length = 347
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 27 DLPQFYKQ-VKWILKEPTRVIIAWTYTMPEIN----ESAGVVFKSFD 68
D QFY++ +K +LKE V++A YT PEI E+ G + S +
Sbjct: 24 DEKQFYREKIKRLLKERNAVMVAHYYTDPEIQQLAEETGGCISDSLE 70
>sp|B5QX27|NADA_SALEP Quinolinate synthase A OS=Salmonella enteritidis PT4 (strain
P125109) GN=nadA PE=3 SV=1
Length = 347
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 27 DLPQFYKQ-VKWILKEPTRVIIAWTYTMPEIN----ESAGVVFKSFD 68
D QFY++ +K +LKE V++A YT PEI E+ G + S +
Sbjct: 24 DEKQFYREKIKRLLKERNAVMVAHYYTDPEIQQLAEETGGCISDSLE 70
>sp|Q8KEW2|NADA_CHLTE Quinolinate synthase A OS=Chlorobium tepidum (strain ATCC 49652 /
DSM 12025 / TLS) GN=nadA PE=3 SV=1
Length = 322
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 31 FYKQVKWILKEPTRVIIAWTYTMPEINESAGVVFKSF 67
++V+ + KE +I+A YT+PEI ++A +V S
Sbjct: 19 LLRRVQALKKEMNAIILAHYYTLPEIQQAADIVGDSL 55
>sp|A4W892|NADA_ENT38 Quinolinate synthase A OS=Enterobacter sp. (strain 638) GN=nadA
PE=3 SV=1
Length = 347
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 26 FDLPQFYKQ-VKWILKEPTRVIIAWTYTMPEIN----ESAGVVFKSFD 68
D QFY++ +K +LKE V++A YT PEI E+ G + S +
Sbjct: 23 LDEKQFYREKIKRMLKERDAVMVAHYYTDPEIQQLAEETGGCISDSLE 70
>sp|Q96GD3|SCMH1_HUMAN Polycomb protein SCMH1 OS=Homo sapiens GN=SCMH1 PE=1 SV=1
Length = 660
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 59 SAGVVFKSFDRVDCEPFWKPQRKLLDNKYMSIDFPFEPVDRDDNTGPFDDYFMFIR 114
S GV+ S +R D E FWK R ++Y+ RD ++ +D F+R
Sbjct: 548 SRGVLKGSNERRDMESFWKLNRSPGSDRYLESRDASRLSGRDPSSWTVEDVMQFVR 603
>sp|Q46LE2|LEU3_PROMT 3-isopropylmalate dehydrogenase OS=Prochlorococcus marinus (strain
NATL2A) GN=leuB PE=3 SV=1
Length = 359
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 13/68 (19%)
Query: 44 RVIIAWTYTMPEINESAGVVFK----------SFDR---VDCEPFWKPQRKLLDNKYMSI 90
R TYT E+N A + FK S D+ +D W+ + L+ NKY I
Sbjct: 157 RAFNTMTYTSEEVNRIAEIAFKLAKQRNQKVCSVDKANVLDVSQLWREETILVSNKYKDI 216
Query: 91 DFPFEPVD 98
+ + VD
Sbjct: 217 ELTHQYVD 224
>sp|A7I176|ATPG_CAMHC ATP synthase gamma chain OS=Campylobacter hominis (strain ATCC
BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=atpG PE=3
SV=1
Length = 296
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 84 DNKYMSIDFPFEPVDRDDN-----TGPFDDYFMFIRL---YSAYQTAKDKSSELLTNNVM 135
+N Y+ + FEP D DN T + +Y M+ L +A +A+ + E TNN
Sbjct: 204 ENSYVGSNMEFEPSDGGDNIIRTLTKKYFEYSMYYSLIDSLAAEHSARMNAMENATNNAK 263
Query: 136 EKF 138
E+
Sbjct: 264 ERL 266
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,140,796
Number of Sequences: 539616
Number of extensions: 2273192
Number of successful extensions: 3710
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3705
Number of HSP's gapped (non-prelim): 17
length of query: 146
length of database: 191,569,459
effective HSP length: 106
effective length of query: 40
effective length of database: 134,370,163
effective search space: 5374806520
effective search space used: 5374806520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)