Query 038491
Match_columns 146
No_of_seqs 159 out of 1606
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 11:35:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3010 Methyltransferase [Gen 100.0 5.3E-30 1.1E-34 190.3 11.2 144 1-145 86-243 (261)
2 COG2226 UbiE Methylase involve 99.6 8.1E-16 1.8E-20 116.0 6.0 72 3-76 107-181 (238)
3 PF01209 Ubie_methyltran: ubiE 99.5 1.7E-14 3.6E-19 108.9 5.0 86 3-91 104-192 (233)
4 KOG1540 Ubiquinone biosynthesi 99.5 1.2E-13 2.6E-18 104.2 8.4 65 3-69 165-232 (296)
5 PF08241 Methyltransf_11: Meth 99.2 7.9E-12 1.7E-16 80.2 3.4 45 3-48 48-95 (95)
6 PLN02232 ubiquinone biosynthes 99.2 3.6E-11 7.9E-16 85.8 6.9 51 3-54 32-85 (160)
7 PRK10258 biotin biosynthesis p 99.1 7.9E-10 1.7E-14 83.8 8.1 62 3-66 91-155 (251)
8 PLN02233 ubiquinone biosynthes 99.0 8.7E-10 1.9E-14 84.5 7.2 52 3-55 133-187 (261)
9 PRK05785 hypothetical protein; 99.0 3.8E-10 8.3E-15 84.8 4.4 102 3-115 98-202 (226)
10 PLN02244 tocopherol O-methyltr 98.9 2.1E-08 4.6E-13 79.6 10.0 49 3-52 174-225 (340)
11 KOG4300 Predicted methyltransf 98.7 3.4E-08 7.4E-13 72.9 6.6 64 3-68 132-199 (252)
12 TIGR02072 BioC biotin biosynth 98.6 2.1E-07 4.5E-12 69.2 7.9 50 3-53 86-138 (240)
13 PTZ00098 phosphoethanolamine N 98.6 5E-07 1.1E-11 69.3 9.5 50 3-53 105-159 (263)
14 TIGR02752 MenG_heptapren 2-hep 98.5 4.3E-07 9.4E-12 67.8 6.9 60 3-64 102-164 (231)
15 PLN02396 hexaprenyldihydroxybe 98.4 2.5E-07 5.4E-12 73.1 4.4 48 4-52 187-237 (322)
16 PRK14103 trans-aconitate 2-met 98.4 3.1E-07 6.8E-12 69.9 4.8 47 3-51 78-127 (255)
17 PRK11873 arsM arsenite S-adeno 98.4 3.8E-07 8.1E-12 70.0 5.1 48 3-51 134-184 (272)
18 PLN02490 MPBQ/MSBQ methyltrans 98.4 5.6E-07 1.2E-11 71.5 4.9 47 3-50 166-215 (340)
19 PLN02336 phosphoethanolamine N 98.3 9.8E-07 2.1E-11 72.8 5.2 49 3-52 320-371 (475)
20 PRK11036 putative S-adenosyl-L 98.3 8.5E-07 1.8E-11 67.6 3.8 48 4-52 100-151 (255)
21 PF05148 Methyltransf_8: Hypot 98.3 9.2E-07 2E-11 65.5 3.7 48 3-51 110-159 (219)
22 KOG3045 Predicted RNA methylas 98.2 2.1E-06 4.6E-11 65.5 4.9 47 4-51 217-265 (325)
23 PF13489 Methyltransf_23: Meth 98.2 5.6E-07 1.2E-11 62.9 1.6 44 8-52 71-117 (161)
24 PRK01683 trans-aconitate 2-met 98.1 4.2E-06 9.1E-11 63.6 4.5 45 4-50 83-130 (258)
25 PRK15068 tRNA mo(5)U34 methylt 98.1 4.5E-06 9.8E-11 65.9 4.4 45 4-50 179-226 (322)
26 TIGR00452 methyltransferase, p 98.1 5.4E-06 1.2E-10 65.3 4.7 46 4-51 178-226 (314)
27 KOG2940 Predicted methyltransf 98.1 1.4E-06 2.9E-11 65.6 1.1 47 4-51 126-175 (325)
28 PRK08317 hypothetical protein; 98.1 9.2E-06 2E-10 60.2 5.5 48 4-52 76-126 (241)
29 smart00138 MeTrc Methyltransfe 98.0 7.1E-06 1.5E-10 63.1 4.6 45 3-48 191-240 (264)
30 PF08242 Methyltransf_12: Meth 98.0 3.2E-06 6.8E-11 55.0 2.3 32 14-46 65-99 (99)
31 TIGR00740 methyltransferase, p 98.0 5.8E-05 1.3E-09 56.8 9.2 47 3-52 112-163 (239)
32 PRK11088 rrmA 23S rRNA methylt 97.9 1.1E-05 2.3E-10 62.1 4.1 45 3-52 139-183 (272)
33 TIGR01934 MenG_MenH_UbiE ubiqu 97.9 2.6E-05 5.5E-10 57.4 5.6 51 3-54 94-147 (223)
34 PRK06922 hypothetical protein; 97.9 1.4E-05 3E-10 68.1 4.5 49 4-53 474-540 (677)
35 PRK11207 tellurite resistance 97.9 2.1E-05 4.5E-10 57.8 4.4 45 4-50 85-134 (197)
36 COG2227 UbiG 2-polyprenyl-3-me 97.9 1.4E-05 3.1E-10 60.3 3.5 49 4-53 113-164 (243)
37 PF13847 Methyltransf_31: Meth 97.8 1.7E-05 3.7E-10 55.6 3.6 48 3-52 60-112 (152)
38 PRK15451 tRNA cmo(5)U34 methyl 97.8 5.2E-05 1.1E-09 57.5 5.7 46 3-51 115-165 (247)
39 smart00828 PKS_MT Methyltransf 97.8 3.4E-05 7.3E-10 57.3 4.3 46 4-51 57-105 (224)
40 TIGR00477 tehB tellurite resis 97.8 4E-05 8.6E-10 56.2 4.5 44 5-50 85-133 (195)
41 PF03141 Methyltransf_29: Puta 97.7 9.7E-06 2.1E-10 66.8 0.8 43 7-50 173-219 (506)
42 PRK00121 trmB tRNA (guanine-N( 97.7 4.9E-05 1.1E-09 56.1 4.0 48 3-51 96-157 (202)
43 PF13649 Methyltransf_25: Meth 97.6 1.5E-05 3.3E-10 52.0 0.7 41 3-44 55-101 (101)
44 PRK11188 rrmJ 23S rRNA methylt 97.6 0.00011 2.3E-09 54.7 4.9 41 11-52 113-167 (209)
45 PRK00216 ubiE ubiquinone/menaq 97.6 0.00014 3.1E-09 54.0 5.6 50 4-54 110-162 (239)
46 PLN02336 phosphoethanolamine N 97.6 7.4E-05 1.6E-09 61.7 4.4 43 8-51 96-143 (475)
47 COG4627 Uncharacterized protei 97.5 3E-05 6.5E-10 55.0 0.8 41 8-49 40-85 (185)
48 PRK00107 gidB 16S rRNA methylt 97.5 0.00016 3.5E-09 52.9 4.6 44 3-50 101-145 (187)
49 KOG1269 SAM-dependent methyltr 97.5 0.00011 2.3E-09 59.1 3.8 48 4-52 167-217 (364)
50 TIGR00091 tRNA (guanine-N(7)-) 97.4 0.00017 3.7E-09 52.8 4.1 47 4-51 73-133 (194)
51 PRK12335 tellurite resistance 97.3 0.00026 5.7E-09 54.9 4.2 43 5-49 175-222 (287)
52 TIGR00138 gidB 16S rRNA methyl 97.3 0.00038 8.1E-09 50.6 4.4 43 4-50 99-142 (181)
53 TIGR01983 UbiG ubiquinone bios 97.2 0.00058 1.2E-08 50.6 4.4 48 4-52 100-151 (224)
54 PRK11705 cyclopropane fatty ac 97.0 0.0011 2.4E-08 53.7 5.0 40 13-53 226-270 (383)
55 PLN03075 nicotianamine synthas 97.0 0.0012 2.5E-08 51.7 4.7 46 4-50 184-233 (296)
56 PF06080 DUF938: Protein of un 97.0 0.0015 3.3E-08 48.4 4.9 64 12-77 99-169 (204)
57 PRK09489 rsmC 16S ribosomal RN 97.0 0.0013 2.9E-08 52.4 4.8 40 13-53 259-306 (342)
58 TIGR00537 hemK_rel_arch HemK-r 97.0 0.0034 7.3E-08 45.1 6.5 40 13-53 80-143 (179)
59 PF05175 MTS: Methyltransferas 97.0 0.0015 3.3E-08 46.8 4.7 41 11-52 94-142 (170)
60 TIGR01177 conserved hypothetic 97.0 0.0019 4.2E-08 51.0 5.7 49 3-52 236-296 (329)
61 TIGR02469 CbiT precorrin-6Y C5 96.9 0.0018 4E-08 43.0 4.7 38 11-51 84-123 (124)
62 KOG2361 Predicted methyltransf 96.9 0.0017 3.6E-08 49.3 4.7 46 9-55 138-188 (264)
63 PRK15001 SAM-dependent 23S rib 96.9 0.002 4.3E-08 52.1 5.4 41 11-52 294-342 (378)
64 PRK14121 tRNA (guanine-N(7)-)- 96.9 0.0015 3.2E-08 53.0 4.6 48 4-52 179-237 (390)
65 KOG1331 Predicted methyltransf 96.8 0.001 2.2E-08 51.5 2.9 49 4-53 92-146 (293)
66 PF13659 Methyltransf_26: Meth 96.8 0.00075 1.6E-08 44.7 2.0 46 4-50 57-115 (117)
67 PF08003 Methyltransf_9: Prote 96.8 0.0021 4.5E-08 50.4 4.5 44 5-50 173-219 (315)
68 PRK05134 bifunctional 3-demeth 96.8 0.0024 5.1E-08 47.7 4.5 47 5-52 103-153 (233)
69 TIGR02081 metW methionine bios 96.7 0.0013 2.9E-08 47.9 2.8 39 4-43 62-105 (194)
70 PRK06202 hypothetical protein; 96.7 0.0025 5.3E-08 47.7 4.3 37 4-40 118-159 (232)
71 PRK13699 putative methylase; P 96.7 0.002 4.3E-08 48.5 3.7 46 4-50 7-72 (227)
72 COG2521 Predicted archaeal met 96.7 0.0023 5.1E-08 48.5 3.8 47 4-51 192-246 (287)
73 PF02353 CMAS: Mycolic acid cy 96.6 0.0029 6.3E-08 49.0 4.3 37 15-52 127-168 (273)
74 TIGR02716 C20_methyl_CrtF C-20 96.6 0.004 8.8E-08 48.6 5.0 46 4-52 206-256 (306)
75 KOG1270 Methyltransferases [Co 96.5 0.0026 5.7E-08 48.8 3.4 38 15-53 158-198 (282)
76 cd02440 AdoMet_MTases S-adenos 96.5 0.0056 1.2E-07 38.2 4.2 37 12-49 63-103 (107)
77 TIGR00438 rrmJ cell division p 96.4 0.0093 2E-07 43.2 5.7 40 11-51 94-147 (188)
78 PF05401 NodS: Nodulation prot 96.4 0.0037 8.1E-08 46.1 3.4 40 11-51 102-147 (201)
79 COG4106 Tam Trans-aconitate me 96.4 0.0025 5.5E-08 47.8 2.5 37 12-49 89-128 (257)
80 PTZ00146 fibrillarin; Provisio 96.3 0.0091 2E-07 46.7 5.5 37 12-49 199-236 (293)
81 TIGR00406 prmA ribosomal prote 96.3 0.0077 1.7E-07 46.8 4.7 42 10-52 220-261 (288)
82 PRK11524 putative methyltransf 96.2 0.0056 1.2E-07 47.5 3.9 46 4-50 14-80 (284)
83 PRK10611 chemotaxis methyltran 96.2 0.0058 1.3E-07 47.7 3.9 35 13-48 221-260 (287)
84 PRK00377 cbiT cobalt-precorrin 96.1 0.0078 1.7E-07 44.0 3.9 37 12-49 108-144 (198)
85 TIGR03587 Pse_Me-ase pseudamin 96.0 0.016 3.6E-07 42.8 5.2 45 3-51 94-143 (204)
86 PRK14967 putative methyltransf 96.0 0.011 2.3E-07 44.1 4.3 40 11-51 97-160 (223)
87 COG1041 Predicted DNA modifica 96.0 0.014 2.9E-07 46.6 4.8 47 4-51 253-311 (347)
88 PRK13944 protein-L-isoaspartat 95.9 0.01 2.2E-07 43.8 3.9 41 4-50 131-173 (205)
89 COG0500 SmtA SAM-dependent met 95.9 0.023 5.1E-07 37.3 5.3 44 9-53 112-158 (257)
90 PF12847 Methyltransf_18: Meth 95.9 0.0098 2.1E-07 38.9 3.4 36 14-50 69-111 (112)
91 PRK04266 fibrillarin; Provisio 95.9 0.011 2.3E-07 44.6 3.8 35 14-49 140-175 (226)
92 PRK00517 prmA ribosomal protei 95.8 0.022 4.7E-07 43.3 5.1 37 13-52 177-215 (250)
93 PF06859 Bin3: Bicoid-interact 95.7 0.0055 1.2E-07 41.0 1.4 33 15-48 1-42 (110)
94 KOG1975 mRNA cap methyltransfe 95.6 0.014 3.1E-07 46.2 3.6 40 8-48 189-235 (389)
95 PRK00811 spermidine synthase; 95.6 0.039 8.5E-07 42.8 6.0 39 11-50 146-191 (283)
96 PRK14901 16S rRNA methyltransf 95.6 0.045 9.7E-07 45.0 6.6 48 4-52 310-386 (434)
97 PF03141 Methyltransf_29: Puta 95.6 0.013 2.8E-07 48.8 3.3 44 6-50 418-467 (506)
98 TIGR03840 TMPT_Se_Te thiopurin 95.6 0.024 5.1E-07 42.3 4.5 48 4-52 101-154 (213)
99 PF07942 N2227: N2227-like pro 95.5 0.018 3.8E-07 44.6 3.8 47 1-48 148-200 (270)
100 PRK08287 cobalt-precorrin-6Y C 95.5 0.039 8.4E-07 39.9 5.4 34 14-50 96-131 (187)
101 TIGR03534 RF_mod_PrmC protein- 95.4 0.026 5.6E-07 42.3 4.4 45 4-50 144-217 (251)
102 PRK14968 putative methyltransf 95.2 0.059 1.3E-06 38.4 5.5 40 11-51 86-149 (188)
103 PRK04457 spermidine synthase; 95.1 0.062 1.3E-06 41.3 5.7 39 13-52 134-179 (262)
104 TIGR00563 rsmB ribosomal RNA s 95.1 0.071 1.5E-06 43.7 6.3 24 29-53 348-371 (426)
105 PRK13942 protein-L-isoaspartat 94.9 0.037 8E-07 41.1 3.8 41 3-49 133-175 (212)
106 PF05891 Methyltransf_PK: AdoM 94.9 0.025 5.4E-07 42.4 2.8 44 7-51 114-162 (218)
107 PRK14903 16S rRNA methyltransf 94.8 0.061 1.3E-06 44.2 5.2 62 4-68 295-382 (431)
108 PRK14904 16S rRNA methyltransf 94.8 0.1 2.3E-06 43.0 6.5 48 4-53 308-380 (445)
109 TIGR00417 speE spermidine synt 94.7 0.1 2.2E-06 40.1 6.0 37 13-50 143-186 (270)
110 TIGR02021 BchM-ChlM magnesium 94.7 0.043 9.2E-07 40.6 3.7 40 5-48 112-156 (219)
111 PF01739 CheR: CheR methyltran 94.6 0.023 5.1E-07 41.9 2.1 38 10-48 131-173 (196)
112 PRK13255 thiopurine S-methyltr 94.6 0.057 1.2E-06 40.4 4.1 45 4-49 104-154 (218)
113 PF03848 TehB: Tellurite resis 94.4 0.061 1.3E-06 39.6 3.9 46 4-51 84-134 (192)
114 COG2230 Cfa Cyclopropane fatty 94.3 0.067 1.5E-06 41.7 4.2 46 8-54 130-180 (283)
115 PF03291 Pox_MCEL: mRNA cappin 94.2 0.053 1.1E-06 43.2 3.3 37 13-50 143-186 (331)
116 PF11968 DUF3321: Putative met 94.0 0.1 2.2E-06 39.1 4.3 42 3-45 89-139 (219)
117 PLN02366 spermidine synthase 93.9 0.19 4.2E-06 39.6 6.0 37 12-49 162-205 (308)
118 COG4798 Predicted methyltransf 93.9 0.064 1.4E-06 39.8 3.0 29 23-52 140-168 (238)
119 PLN02668 indole-3-acetate carb 93.9 1.3 2.7E-05 36.2 10.7 18 10-27 157-176 (386)
120 KOG2899 Predicted methyltransf 93.9 0.1 2.3E-06 39.9 4.2 38 10-48 161-207 (288)
121 TIGR00446 nop2p NOL1/NOP2/sun 93.8 0.19 4E-06 38.6 5.7 48 4-52 129-201 (264)
122 PRK01581 speE spermidine synth 93.8 0.14 3E-06 41.4 5.1 41 10-51 221-269 (374)
123 PRK10901 16S rRNA methyltransf 93.7 0.2 4.3E-06 41.1 6.1 48 4-52 300-374 (427)
124 TIGR03438 probable methyltrans 93.7 0.11 2.3E-06 40.7 4.4 27 23-50 148-177 (301)
125 PRK00312 pcm protein-L-isoaspa 93.7 0.11 2.3E-06 38.3 4.0 34 12-51 141-176 (212)
126 KOG1709 Guanidinoacetate methy 93.7 0.071 1.5E-06 40.2 3.0 40 10-50 164-206 (271)
127 KOG1541 Predicted protein carb 93.7 0.2 4.3E-06 38.0 5.4 45 7-52 104-162 (270)
128 PF00891 Methyltransf_2: O-met 93.6 0.1 2.2E-06 39.1 3.9 47 4-54 150-203 (241)
129 PF07021 MetW: Methionine bios 93.5 0.07 1.5E-06 39.3 2.7 37 4-40 62-103 (193)
130 COG4976 Predicted methyltransf 93.5 0.064 1.4E-06 40.8 2.6 40 11-51 184-226 (287)
131 PRK00536 speE spermidine synth 93.4 0.12 2.5E-06 40.0 3.9 33 13-49 137-170 (262)
132 TIGR00080 pimt protein-L-isoas 93.4 0.12 2.7E-06 38.1 4.0 41 4-50 135-177 (215)
133 COG4123 Predicted O-methyltran 93.3 0.12 2.6E-06 39.6 3.8 46 4-50 102-170 (248)
134 PF05219 DREV: DREV methyltran 93.1 0.15 3.4E-06 39.2 4.2 36 12-48 148-186 (265)
135 KOG2352 Predicted spermine/spe 92.4 0.18 3.9E-06 41.9 3.9 50 1-51 100-162 (482)
136 COG0275 Predicted S-adenosylme 92.4 0.54 1.2E-05 37.0 6.3 88 27-124 222-310 (314)
137 PRK09328 N5-glutamine S-adenos 92.4 0.24 5.1E-06 37.7 4.4 20 29-49 218-237 (275)
138 PRK14902 16S rRNA methyltransf 92.3 0.51 1.1E-05 38.9 6.5 23 29-52 359-381 (444)
139 PRK03612 spermidine synthase; 92.0 0.39 8.4E-06 40.6 5.6 38 12-50 370-415 (521)
140 COG0220 Predicted S-adenosylme 91.9 0.36 7.7E-06 36.5 4.7 40 11-51 115-165 (227)
141 COG1352 CheR Methylase of chem 91.9 0.33 7.2E-06 37.6 4.6 36 12-48 199-239 (268)
142 COG2264 PrmA Ribosomal protein 91.5 0.25 5.5E-06 38.8 3.7 35 14-51 228-264 (300)
143 PRK07402 precorrin-6B methylas 91.4 0.43 9.3E-06 34.6 4.7 35 15-52 109-144 (196)
144 PRK11805 N5-glutamine S-adenos 91.1 0.37 8E-06 37.9 4.3 20 29-49 243-262 (307)
145 COG2813 RsmC 16S RNA G1207 met 91.1 0.56 1.2E-05 36.9 5.2 45 10-56 220-272 (300)
146 PLN02781 Probable caffeoyl-CoA 90.7 0.37 8E-06 36.4 3.8 34 13-48 142-176 (234)
147 TIGR00006 S-adenosyl-methyltra 90.7 0.52 1.1E-05 37.2 4.7 37 27-69 218-254 (305)
148 PF01234 NNMT_PNMT_TEMT: NNMT/ 90.6 0.18 4E-06 38.7 2.1 36 15-51 158-200 (256)
149 KOG3178 Hydroxyindole-O-methyl 90.6 0.48 1E-05 37.9 4.5 38 16-54 237-279 (342)
150 COG2519 GCD14 tRNA(1-methylade 90.6 1.1 2.3E-05 34.5 6.2 42 5-50 154-195 (256)
151 TIGR03533 L3_gln_methyl protei 90.3 0.51 1.1E-05 36.7 4.4 20 29-49 231-250 (284)
152 TIGR00536 hemK_fam HemK family 90.0 0.45 9.8E-06 36.8 3.9 20 28-48 223-242 (284)
153 PRK13256 thiopurine S-methyltr 89.7 0.63 1.4E-05 35.1 4.3 47 4-51 110-164 (226)
154 COG4122 Predicted O-methyltran 89.7 0.57 1.2E-05 35.2 4.0 37 11-48 128-164 (219)
155 PF02390 Methyltransf_4: Putat 89.2 0.59 1.3E-05 34.3 3.8 40 11-51 84-134 (195)
156 PRK07580 Mg-protoporphyrin IX 89.0 0.51 1.1E-05 34.8 3.4 38 9-47 121-163 (230)
157 PF02527 GidB: rRNA small subu 89.0 0.35 7.6E-06 35.3 2.4 44 4-51 105-149 (184)
158 PF11899 DUF3419: Protein of u 88.8 0.79 1.7E-05 37.3 4.6 43 11-54 291-338 (380)
159 PRK00050 16S rRNA m(4)C1402 me 88.5 0.97 2.1E-05 35.5 4.7 37 27-69 214-250 (296)
160 PRK13943 protein-L-isoaspartat 88.4 0.8 1.7E-05 36.4 4.3 41 4-50 138-180 (322)
161 PF01555 N6_N4_Mtase: DNA meth 88.0 0.36 7.8E-06 35.1 2.0 24 28-52 35-58 (231)
162 PF01795 Methyltransf_5: MraW 88.0 0.77 1.7E-05 36.3 3.9 36 28-69 220-255 (310)
163 PHA03411 putative methyltransf 87.5 0.96 2.1E-05 35.2 4.1 49 4-54 116-187 (279)
164 PF06325 PrmA: Ribosomal prote 86.5 0.48 1.1E-05 37.2 2.0 40 11-51 221-260 (295)
165 PF01564 Spermine_synth: Sperm 86.2 1.5 3.3E-05 33.3 4.6 36 15-51 150-192 (246)
166 KOG1099 SAM-dependent methyltr 85.5 0.79 1.7E-05 35.0 2.6 44 5-49 103-162 (294)
167 PF10294 Methyltransf_16: Puta 85.3 1.9 4.1E-05 30.9 4.5 36 12-48 116-154 (173)
168 COG0421 SpeE Spermidine syntha 84.1 4.2 9.1E-05 31.7 6.2 35 15-50 149-190 (282)
169 PF03269 DUF268: Caenorhabditi 83.5 1.1 2.4E-05 32.2 2.5 36 13-49 61-110 (177)
170 PF06962 rRNA_methylase: Putat 83.0 1.6 3.5E-05 30.5 3.2 54 14-69 45-111 (140)
171 PRK15128 23S rRNA m(5)C1962 me 82.0 5.7 0.00012 32.5 6.5 39 13-52 291-341 (396)
172 PLN02823 spermine synthase 81.9 2.6 5.7E-05 33.7 4.4 38 12-50 173-220 (336)
173 PHA03412 putative methyltransf 81.5 2.8 6.1E-05 32.0 4.2 40 4-45 104-158 (241)
174 TIGR03704 PrmC_rel_meth putati 81.0 2.7 5.8E-05 32.0 4.0 21 29-50 196-216 (251)
175 PF01170 UPF0020: Putative RNA 80.2 2.5 5.4E-05 30.5 3.5 45 3-49 94-149 (179)
176 COG1092 Predicted SAM-dependen 79.5 5.4 0.00012 32.7 5.5 41 13-54 288-340 (393)
177 PRK01544 bifunctional N5-gluta 79.5 3.6 7.7E-05 34.7 4.6 40 11-51 413-463 (506)
178 PF08704 GCD14: tRNA methyltra 79.1 2.4 5.3E-05 32.4 3.2 34 14-50 112-146 (247)
179 KOG3201 Uncharacterized conser 79.0 2.7 5.9E-05 30.5 3.2 37 11-48 99-138 (201)
180 PLN02585 magnesium protoporphy 79.0 3.3 7.2E-05 32.8 4.1 33 13-47 210-247 (315)
181 PLN02476 O-methyltransferase 78.7 2.9 6.2E-05 32.6 3.6 35 13-48 192-226 (278)
182 PRK01544 bifunctional N5-gluta 78.0 3.5 7.7E-05 34.7 4.2 18 30-48 250-267 (506)
183 KOG2798 Putative trehalase [Ca 77.4 3.9 8.6E-05 32.6 4.0 34 13-49 257-295 (369)
184 PF04672 Methyltransf_19: S-ad 76.7 9.4 0.0002 29.6 5.8 71 13-85 149-224 (267)
185 PRK14966 unknown domain/N5-glu 74.7 5.7 0.00012 32.8 4.4 18 30-48 362-379 (423)
186 PLN02589 caffeoyl-CoA O-methyl 74.5 4.5 9.7E-05 30.9 3.6 33 14-48 155-188 (247)
187 KOG1663 O-methyltransferase [S 73.8 4.3 9.3E-05 30.8 3.2 36 11-48 145-181 (237)
188 COG3963 Phospholipid N-methylt 73.7 5.6 0.00012 29.0 3.6 50 3-53 100-159 (194)
189 PRK11783 rlmL 23S rRNA m(2)G24 73.7 4.5 9.8E-05 35.5 3.8 39 13-52 606-658 (702)
190 PF01728 FtsJ: FtsJ-like methy 73.4 14 0.00031 26.1 5.9 54 14-69 90-157 (181)
191 PF01596 Methyltransf_3: O-met 73.2 4.1 8.8E-05 30.2 3.0 34 13-48 119-153 (205)
192 smart00650 rADc Ribosomal RNA 73.0 2.4 5.2E-05 30.0 1.7 23 3-25 65-89 (169)
193 COG2242 CobL Precorrin-6B meth 72.6 7.8 0.00017 28.5 4.3 34 15-51 102-136 (187)
194 PF05724 TPMT: Thiopurine S-me 71.2 3.8 8.3E-05 30.6 2.5 47 4-51 104-158 (218)
195 PRK11933 yebU rRNA (cytosine-C 70.6 9.3 0.0002 32.0 4.8 24 29-53 222-245 (470)
196 PF10672 Methyltrans_SAM: S-ad 69.5 6.1 0.00013 30.9 3.3 39 13-52 193-240 (286)
197 PF13578 Methyltransf_24: Meth 65.5 2.8 6.1E-05 27.0 0.7 36 13-49 67-104 (106)
198 COG0144 Sun tRNA and rRNA cyto 65.1 11 0.00024 30.3 4.2 23 30-53 269-291 (355)
199 PF14258 DUF4350: Domain of un 62.5 22 0.00047 21.1 4.3 25 23-49 45-69 (70)
200 PF14740 DUF4471: Domain of un 58.9 11 0.00024 29.6 3.0 31 13-49 220-253 (289)
201 PF01269 Fibrillarin: Fibrilla 58.0 10 0.00022 28.7 2.6 35 15-50 143-178 (229)
202 PF03492 Methyltransf_7: SAM d 57.7 7 0.00015 31.2 1.8 20 8-27 100-121 (334)
203 PF01135 PCMT: Protein-L-isoas 57.5 8.2 0.00018 28.7 2.0 34 12-50 138-172 (209)
204 PF03059 NAS: Nicotianamine sy 56.8 22 0.00047 27.7 4.3 44 5-49 182-229 (276)
205 PF02558 ApbA: Ketopantoate re 54.3 15 0.00033 25.0 2.9 42 12-54 64-105 (151)
206 PF05430 Methyltransf_30: S-ad 53.0 7.7 0.00017 26.4 1.2 36 14-50 49-90 (124)
207 PF10237 N6-adenineMlase: Prob 52.6 30 0.00066 24.7 4.2 38 13-50 84-123 (162)
208 PF05185 PRMT5: PRMT5 arginine 49.6 7.2 0.00016 32.5 0.7 42 3-46 247-293 (448)
209 KOG1499 Protein arginine N-met 49.6 12 0.00026 30.1 1.9 43 3-46 115-163 (346)
210 PRK09489 rsmC 16S ribosomal RN 49.2 51 0.0011 26.3 5.5 52 14-67 75-128 (342)
211 KOG1271 Methyltransferases [Ge 47.2 27 0.00058 26.0 3.2 34 30-66 162-195 (227)
212 KOG3987 Uncharacterized conser 47.2 13 0.00028 28.2 1.6 35 13-48 167-205 (288)
213 COG2520 Predicted methyltransf 47.0 34 0.00073 27.6 4.1 47 3-52 244-291 (341)
214 PRK14755 transcriptional regul 46.7 15 0.00033 17.4 1.3 16 31-47 8-23 (26)
215 KOG1661 Protein-L-isoaspartate 44.7 36 0.00077 25.8 3.6 41 4-48 151-191 (237)
216 KOG2198 tRNA cytosine-5-methyl 44.5 46 0.001 27.1 4.5 23 31-54 278-300 (375)
217 PF03602 Cons_hypoth95: Conser 43.8 15 0.00032 26.6 1.5 38 12-50 111-153 (183)
218 KOG2904 Predicted methyltransf 38.8 1.3E+02 0.0029 23.8 6.0 50 3-53 210-288 (328)
219 TIGR02987 met_A_Alw26 type II 38.5 52 0.0011 27.7 4.2 17 33-50 180-196 (524)
220 PRK04338 N(2),N(2)-dimethylgua 36.5 48 0.001 27.0 3.5 35 13-50 123-158 (382)
221 cd08254 hydroxyacyl_CoA_DH 6-h 36.5 75 0.0016 24.2 4.5 37 12-52 229-265 (338)
222 PF02384 N6_Mtase: N-6 DNA Met 36.4 43 0.00092 25.9 3.2 37 13-50 123-183 (311)
223 KOG1500 Protein arginine N-met 36.2 35 0.00076 27.9 2.6 42 4-47 233-279 (517)
224 PF10131 PTPS_related: 6-pyruv 36.1 72 0.0016 27.8 4.7 39 15-54 487-526 (616)
225 COG0357 GidB Predicted S-adeno 34.3 44 0.00095 25.1 2.8 42 4-48 124-166 (215)
226 PRK13168 rumA 23S rRNA m(5)U19 33.9 73 0.0016 26.3 4.3 41 9-51 361-401 (443)
227 PF00107 ADH_zinc_N: Zinc-bind 33.7 31 0.00067 22.6 1.7 36 14-53 57-92 (130)
228 KOG4589 Cell division protein 33.4 2.1E+02 0.0045 21.5 6.7 57 11-69 132-202 (232)
229 PF12147 Methyltransf_20: Puta 33.0 83 0.0018 25.0 4.2 35 15-50 209-249 (311)
230 PF08351 DUF1726: Domain of un 32.5 73 0.0016 20.4 3.3 37 13-51 9-46 (92)
231 PF13277 YmdB: YmdB-like prote 31.9 18 0.0004 27.8 0.4 28 14-42 55-85 (253)
232 PRK06853 indolepyruvate oxidor 30.1 1E+02 0.0023 22.2 4.2 32 13-50 66-97 (197)
233 PF10726 DUF2518: Protein of f 29.8 51 0.0011 23.2 2.3 35 13-48 77-115 (145)
234 PF13065 DUF3928: Protein of u 29.6 1.4E+02 0.003 18.7 3.9 34 27-66 56-89 (95)
235 PF01189 Nol1_Nop2_Fmu: NOL1/N 29.6 24 0.00051 27.4 0.7 22 30-52 196-221 (283)
236 PRK05708 2-dehydropantoate 2-r 29.5 99 0.0021 24.1 4.2 38 14-54 69-108 (305)
237 PF06897 DUF1269: Protein of u 28.9 1.6E+02 0.0035 19.2 4.5 40 28-69 41-80 (102)
238 PF10354 DUF2431: Domain of un 28.3 1.3E+02 0.0028 21.4 4.3 40 11-51 71-126 (166)
239 TIGR00745 apbA_panE 2-dehydrop 27.5 1.1E+02 0.0024 23.1 4.1 37 14-53 58-96 (293)
240 TIGR00308 TRM1 tRNA(guanine-26 27.1 1.1E+02 0.0024 24.8 4.2 35 13-50 112-147 (374)
241 PRK04930 glutathione-regulated 27.1 75 0.0016 23.1 2.9 27 16-43 62-91 (184)
242 PRK06249 2-dehydropantoate 2-r 26.6 1.3E+02 0.0028 23.3 4.4 39 14-53 71-109 (313)
243 TIGR00478 tly hemolysin TlyA f 26.5 85 0.0018 23.6 3.2 30 14-50 142-171 (228)
244 TIGR03439 methyl_EasF probable 26.1 52 0.0011 26.2 2.1 33 15-48 156-195 (319)
245 COG2518 Pcm Protein-L-isoaspar 25.5 1.1E+02 0.0024 22.9 3.6 35 12-50 135-169 (209)
246 PF10096 DUF2334: Uncharacteri 25.1 99 0.0021 23.4 3.4 31 24-55 50-80 (243)
247 PF10686 DUF2493: Protein of u 24.8 1.7E+02 0.0037 17.7 6.0 36 18-54 6-42 (71)
248 PRK10634 tRNA(ANN) t(6)A37 thr 24.2 96 0.0021 22.5 3.1 23 27-50 5-27 (190)
249 PF04028 DUF374: Domain of unk 24.2 1.1E+02 0.0024 18.8 2.9 21 29-50 46-66 (74)
250 COG0863 DNA modification methy 24.1 62 0.0013 24.6 2.1 22 28-50 78-99 (302)
251 PRK10909 rsmD 16S rRNA m(2)G96 23.7 1.6E+02 0.0036 21.5 4.2 38 13-51 119-160 (199)
252 COG2813 RsmC 16S RNA G1207 met 23.6 2.6E+02 0.0057 22.2 5.5 37 15-52 37-75 (300)
253 PRK11783 rlmL 23S rRNA m(2)G24 23.5 1.3E+02 0.0029 26.5 4.2 49 3-51 289-348 (702)
254 PHA02053 hypothetical protein 23.5 48 0.001 21.8 1.2 37 4-44 58-113 (115)
255 PF09857 DUF2084: Uncharacteri 23.4 1.1E+02 0.0024 19.4 2.8 24 26-50 1-24 (85)
256 cd05278 FDH_like Formaldehyde 23.2 1.5E+02 0.0033 22.7 4.2 33 14-50 235-267 (347)
257 COG1063 Tdh Threonine dehydrog 22.2 1.5E+02 0.0033 23.5 4.1 35 15-53 238-272 (350)
258 PF01383 CpcD: CpcD/allophycoc 21.9 1.5E+02 0.0033 17.1 3.0 24 25-49 30-53 (56)
259 PRK00871 glutathione-regulated 21.8 1E+02 0.0022 22.2 2.8 28 15-43 55-85 (176)
260 cd01842 SGNH_hydrolase_like_5 21.5 1.8E+02 0.0039 21.3 3.9 43 10-54 45-102 (183)
261 KOG3350 Uncharacterized conser 21.4 3.2E+02 0.007 20.3 5.2 68 14-88 134-204 (217)
262 PRK13556 azoreductase; Provisi 21.3 1.2E+02 0.0027 22.0 3.2 18 23-40 99-117 (208)
263 PF09999 DUF2240: Uncharacteri 21.3 1.4E+02 0.003 21.0 3.2 24 17-40 22-48 (144)
264 PRK06274 indolepyruvate oxidor 21.2 1.2E+02 0.0027 21.7 3.2 31 13-50 65-96 (197)
265 COG2890 HemK Methylase of poly 21.1 96 0.0021 24.0 2.7 20 29-49 218-237 (280)
266 PF14226 DIOX_N: non-haem diox 20.9 1.2E+02 0.0026 19.5 2.8 26 28-54 13-38 (116)
267 PRK13687 hypothetical protein; 20.6 1.4E+02 0.003 19.0 2.8 24 26-50 1-24 (85)
268 PRK08441 oorC 2-oxoglutarate-a 20.4 2.1E+02 0.0046 20.5 4.2 33 11-49 64-96 (183)
269 PF07090 DUF1355: Protein of u 20.4 1.7E+02 0.0037 21.2 3.6 37 14-51 66-109 (177)
270 COG2443 Sss1 Preprotein transl 20.2 88 0.0019 18.9 1.8 13 28-40 11-23 (65)
No 1
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.97 E-value=5.3e-30 Score=190.33 Aligned_cols=144 Identities=33% Similarity=0.606 Sum_probs=123.9
Q ss_pred CcccccccCCCCCCccceEEEe--ccccChhhHHHHHHHHhhCCCceEEEEecC-CCCCCHHHHHHHHHhhhhccCCCc-
Q 038491 1 MFITELEQIVATQSSEDLVTIA--LYWFDLPQFYKQVKWILKEPTRVIIAWTYT-MPEINESAGVVFKSFDRVDCEPFW- 76 (146)
Q Consensus 1 ~~~~~~e~l~~~d~s~Dlv~~a--~hw~D~~~~l~e~~RvLk~pgG~la~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~- 76 (146)
||+.+.++|--+++|+|||+|| +||||+++|+++++||||||||++|+|.|. .....++...++.+++. ...|||
T Consensus 86 ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~-~~~p~~r 164 (261)
T KOG3010|consen 86 MSSDEMVDLLGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYD-STLPYWR 164 (261)
T ss_pred ccccccccccCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhh-ccCchhh
Confidence 6667777777779999999999 999999999999999999888999999998 43446899999999987 577884
Q ss_pred hhhhhhhhhhhccCCCCCCCCccCC----------CccCHHHHHHHHHhHHHHHHHHHcCchhhhHHHHHHHHHhhCCC
Q 038491 77 KPQRKLLDNKYMSIDFPFEPVDRDD----------NTGPFDDYFMFIRLYSAYQTAKDKSSELLTNNVMEKFKFAWNED 145 (146)
Q Consensus 77 ~~~~~~~~~~~~~~~~~f~~i~~~~----------~~~t~~~~~~~l~S~S~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 145 (146)
.+-+.+..++|.+++|||..+.... .+.++++|.++++|||.+.++++++.+++.+.++.+++++|+++
T Consensus 165 ~~~~n~~fdgy~~~~F~~e~v~~~s~~~~~~l~~~~~lsl~~F~~~~rsws~~~~akek~~e~i~~~~I~e~~~~~~~~ 243 (261)
T KOG3010|consen 165 SPLRNLLFDGYKTIEFPFESVGMGSQGKPKTLEIPHTLSLEGFSGFLRSWSAYKEAKEKGLELIADIFIPEFEEAWGED 243 (261)
T ss_pred hHHHHhhccccccccccccccCCCCCCCceeehhhHHHHHHHHHHHHhCcHHHHHHHhcChHHHHHHHHHHHHhhcccc
Confidence 4667788899999999999874321 24578999999999999999999998878777999999999987
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=8.1e-16 Score=115.96 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=59.5
Q ss_pred ccccccCCCCCCccceEEEe--cccc-ChhhHHHHHHHHhhCCCceEEEEecCCCCCCHHHHHHHHHhhhhccCCCc
Q 038491 3 ITELEQIVATQSSEDLVTIA--LYWF-DLPQFYKQVKWILKEPTRVIIAWTYTMPEINESAGVVFKSFDRVDCEPFW 76 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a--~hw~-D~~~~l~e~~RvLk~pgG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (146)
.+|||+|||+|+|||+||++ +|++ |++++|+|++|||| |||.+++...+.|. .+.+...+..++...+.|..
T Consensus 107 ~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlK-pgG~~~vle~~~p~-~~~~~~~~~~~~~~~v~P~~ 181 (238)
T COG2226 107 VGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLK-PGGRLLVLEFSKPD-NPVLRKAYILYYFKYVLPLI 181 (238)
T ss_pred EechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhc-CCeEEEEEEcCCCC-chhhHHHHHHHHHHhHhhhh
Confidence 68999999999999999999 6655 99999999999999 99999999987764 35666667766664354543
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.51 E-value=1.7e-14 Score=108.91 Aligned_cols=86 Identities=19% Similarity=0.196 Sum_probs=46.5
Q ss_pred ccccccCCCCCCccceEEEe--cc-ccChhhHHHHHHHHhhCCCceEEEEecCCCCCCHHHHHHHHHhhhhccCCCchhh
Q 038491 3 ITELEQIVATQSSEDLVTIA--LY-WFDLPQFYKQVKWILKEPTRVIIAWTYTMPEINESAGVVFKSFDRVDCEPFWKPQ 79 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a--~h-w~D~~~~l~e~~RvLk~pgG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (146)
.+|+|++|++|+|||+|+++ +| ..|++++++|++|||| |||++++.+++.|. ++.+..+++ +|...+.|..+.-
T Consensus 104 ~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLk-PGG~l~ile~~~p~-~~~~~~~~~-~y~~~ilP~~g~l 180 (233)
T PF01209_consen 104 QGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLK-PGGRLVILEFSKPR-NPLLRALYK-FYFKYILPLIGRL 180 (233)
T ss_dssp E-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEE-EEEEEEEEEEEB-S-SHHHHHHHH-H------------
T ss_pred EcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcC-CCeEEEEeeccCCC-Cchhhceee-eeecccccccccc
Confidence 58999999999999999999 65 4599999999999999 99999999988775 345555454 4544566655432
Q ss_pred hhhhhhhhccCC
Q 038491 80 RKLLDNKYMSID 91 (146)
Q Consensus 80 ~~~~~~~~~~~~ 91 (146)
...-...|++++
T Consensus 181 ~~~~~~~Y~yL~ 192 (233)
T PF01209_consen 181 LSGDREAYRYLP 192 (233)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 111123466664
No 4
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.49 E-value=1.2e-13 Score=104.17 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=54.2
Q ss_pred ccccccCCCCCCccceEEEe---ccccChhhHHHHHHHHhhCCCceEEEEecCCCCCCHHHHHHHHHhhh
Q 038491 3 ITELEQIVATQSSEDLVTIA---LYWFDLPQFYKQVKWILKEPTRVIIAWTYTMPEINESAGVVFKSFDR 69 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a---~hw~D~~~~l~e~~RvLk~pgG~la~~~~~~~~~~~~~~~~~~~~~~ 69 (146)
.+|||+|||+|++||+.|+| .+|+|++++++|++|||| |||+|.+..++... ++.+...++.+..
T Consensus 165 ~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLK-pGGrf~cLeFskv~-~~~l~~fy~~ysf 232 (296)
T KOG1540|consen 165 EGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLK-PGGRFSCLEFSKVE-NEPLKWFYDQYSF 232 (296)
T ss_pred eCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcC-CCcEEEEEEccccc-cHHHHHHHHhhhh
Confidence 57999999999999999999 799999999999999999 99999988875422 2556565555544
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.22 E-value=7.9e-12 Score=80.17 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=39.6
Q ss_pred ccccccCCCCCCccceEEEe--cccc-ChhhHHHHHHHHhhCCCceEEE
Q 038491 3 ITELEQIVATQSSEDLVTIA--LYWF-DLPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a--~hw~-D~~~~l~e~~RvLk~pgG~la~ 48 (146)
.++++++|++++|||+|++. +||+ |+.++++|++|+|| |||++++
T Consensus 48 ~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk-~gG~l~~ 95 (95)
T PF08241_consen 48 QGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLK-PGGRLVI 95 (95)
T ss_dssp ESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEE-EEEEEEE
T ss_pred eehHHhCccccccccccccccceeeccCHHHHHHHHHHHcC-cCeEEeC
Confidence 46889999999999999999 7777 99999999999999 9999975
No 6
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.22 E-value=3.6e-11 Score=85.77 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=46.0
Q ss_pred ccccccCCCCCCccceEEEe--cc-ccChhhHHHHHHHHhhCCCceEEEEecCCC
Q 038491 3 ITELEQIVATQSSEDLVTIA--LY-WFDLPQFYKQVKWILKEPTRVIIAWTYTMP 54 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a--~h-w~D~~~~l~e~~RvLk~pgG~la~~~~~~~ 54 (146)
.+|++++|+++++||+|+++ +| +.|+.++++|++|||| |||.|++..+..+
T Consensus 32 ~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLk-pGG~l~i~d~~~~ 85 (160)
T PLN02232 32 EGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLK-PGSRVSILDFNKS 85 (160)
T ss_pred EechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcC-cCeEEEEEECCCC
Confidence 47899999999999999999 65 5599999999999999 9999999988654
No 7
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.05 E-value=7.9e-10 Score=83.84 Aligned_cols=62 Identities=13% Similarity=0.259 Sum_probs=51.4
Q ss_pred ccccccCCCCCCccceEEEe--cccc-ChhhHHHHHHHHhhCCCceEEEEecCCCCCCHHHHHHHHH
Q 038491 3 ITELEQIVATQSSEDLVTIA--LYWF-DLPQFYKQVKWILKEPTRVIIAWTYTMPEINESAGVVFKS 66 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a--~hw~-D~~~~l~e~~RvLk~pgG~la~~~~~~~~~~~~~~~~~~~ 66 (146)
.+|++++|+++++||+|++. +||+ |+..++.++.|+|| |||.+++...+.... +++.+.+..
T Consensus 91 ~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk-~gG~l~~~~~~~~~~-~el~~~~~~ 155 (251)
T PRK10258 91 AGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVR-PGGVVAFTTLVQGSL-PELHQAWQA 155 (251)
T ss_pred EcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcC-CCeEEEEEeCCCCch-HHHHHHHHH
Confidence 47889999999999999998 8998 99999999999999 999999987654332 555555544
No 8
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.02 E-value=8.7e-10 Score=84.51 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=46.0
Q ss_pred ccccccCCCCCCccceEEEe--cccc-ChhhHHHHHHHHhhCCCceEEEEecCCCC
Q 038491 3 ITELEQIVATQSSEDLVTIA--LYWF-DLPQFYKQVKWILKEPTRVIIAWTYTMPE 55 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a--~hw~-D~~~~l~e~~RvLk~pgG~la~~~~~~~~ 55 (146)
.++++++|+++++||+|+++ +|++ |+.++++|++|+|| |||.+++..+..+.
T Consensus 133 ~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLk-pGG~l~i~d~~~~~ 187 (261)
T PLN02233 133 EGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLK-PGSRVSILDFNKST 187 (261)
T ss_pred EcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcC-cCcEEEEEECCCCC
Confidence 46889999999999999998 6655 99999999999999 99999998886553
No 9
>PRK05785 hypothetical protein; Provisional
Probab=99.00 E-value=3.8e-10 Score=84.77 Aligned_cols=102 Identities=13% Similarity=0.057 Sum_probs=61.4
Q ss_pred ccccccCCCCCCccceEEEe--cccc-ChhhHHHHHHHHhhCCCceEEEEecCCCCCCHHHHHHHHHhhhhccCCCchhh
Q 038491 3 ITELEQIVATQSSEDLVTIA--LYWF-DLPQFYKQVKWILKEPTRVIIAWTYTMPEINESAGVVFKSFDRVDCEPFWKPQ 79 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a--~hw~-D~~~~l~e~~RvLk~pgG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (146)
.++++++|++++|||+|+++ +|++ |++++++|++|||| |. +++...+.|. +. +.+.+..+|...+.|.+..-
T Consensus 98 ~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLk-p~--~~ile~~~p~-~~-~~~~~~~~y~~~~~P~~~~~ 172 (226)
T PRK05785 98 VGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSR-KQ--VGFIAMGKPD-NV-IKRKYLSFYLRYIMPYIACL 172 (226)
T ss_pred EechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhc-Cc--eEEEEeCCCC-cH-HHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999 6655 99999999999999 94 3344444443 22 23334445544455554431
Q ss_pred hhhhhhhhccCCCCCCCCccCCCccCHHHHHHHHHh
Q 038491 80 RKLLDNKYMSIDFPFEPVDRDDNTGPFDDYFMFIRL 115 (146)
Q Consensus 80 ~~~~~~~~~~~~~~f~~i~~~~~~~t~~~~~~~l~S 115 (146)
-..-.+.|.+++-....+ .+.+++..+++.
T Consensus 173 ~~~~~~~Y~yl~~si~~f------~~~~~~~~~~~~ 202 (226)
T PRK05785 173 AGAKCRDYKYIYYIYERL------PTNSFHREIFEK 202 (226)
T ss_pred hcCChHHHHHHHHHHHHC------CCHHHHHHHHHH
Confidence 111123455543221111 145666666654
No 10
>PLN02244 tocopherol O-methyltransferase
Probab=98.86 E-value=2.1e-08 Score=79.58 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=43.8
Q ss_pred ccccccCCCCCCccceEEEe---ccccChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 3 ITELEQIVATQSSEDLVTIA---LYWFDLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a---~hw~D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
.+|++++|+++++||+|++. .|+.|..++++|++|+|| |||.|++..+.
T Consensus 174 ~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLk-pGG~lvi~~~~ 225 (340)
T PLN02244 174 VADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAA-PGGRIIIVTWC 225 (340)
T ss_pred EcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcC-CCcEEEEEEec
Confidence 46788899999999999997 578899999999999999 99999987653
No 11
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.73 E-value=3.4e-08 Score=72.90 Aligned_cols=64 Identities=17% Similarity=0.124 Sum_probs=52.3
Q ss_pred ccccccCC-CCCCccceEEEe---ccccChhhHHHHHHHHhhCCCceEEEEecCCCCCCHHHHHHHHHhh
Q 038491 3 ITELEQIV-ATQSSEDLVTIA---LYWFDLPQFYKQVKWILKEPTRVIIAWTYTMPEINESAGVVFKSFD 68 (146)
Q Consensus 3 ~~~~e~l~-~~d~s~Dlv~~a---~hw~D~~~~l~e~~RvLk~pgG~la~~~~~~~~~~~~~~~~~~~~~ 68 (146)
-|++|+|| ++|+|+|.|+++ .---|+.+.|+|+.|+|| |||++.++.+...+. .-++.++++..
T Consensus 132 va~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLR-pgG~iifiEHva~~y-~~~n~i~q~v~ 199 (252)
T KOG4300|consen 132 VADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLR-PGGRIIFIEHVAGEY-GFWNRILQQVA 199 (252)
T ss_pred eechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcC-CCcEEEEEecccccc-hHHHHHHHHHh
Confidence 37889999 999999999999 455699999999999999 999999999875442 45555555543
No 12
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.61 E-value=2.1e-07 Score=69.22 Aligned_cols=50 Identities=28% Similarity=0.402 Sum_probs=44.5
Q ss_pred ccccccCCCCCCccceEEEe--cccc-ChhhHHHHHHHHhhCCCceEEEEecCC
Q 038491 3 ITELEQIVATQSSEDLVTIA--LYWF-DLPQFYKQVKWILKEPTRVIIAWTYTM 53 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a--~hw~-D~~~~l~e~~RvLk~pgG~la~~~~~~ 53 (146)
.+|++++|+++++||+|++. +||+ |+..++.+++|+|| |||.+++...+.
T Consensus 86 ~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~-~~G~l~~~~~~~ 138 (240)
T TIGR02072 86 CGDAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLK-PGGLLAFSTFGP 138 (240)
T ss_pred ecchhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcC-CCcEEEEEeCCc
Confidence 36778889999999999999 8988 99999999999999 999999876544
No 13
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.58 E-value=5e-07 Score=69.34 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=43.2
Q ss_pred ccccccCCCCCCccceEEEe---cccc--ChhhHHHHHHHHhhCCCceEEEEecCC
Q 038491 3 ITELEQIVATQSSEDLVTIA---LYWF--DLPQFYKQVKWILKEPTRVIIAWTYTM 53 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a---~hw~--D~~~~l~e~~RvLk~pgG~la~~~~~~ 53 (146)
.+|+++.|+++++||+|++. +|+. |+..++++++|+|| |||.|++..+..
T Consensus 105 ~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~Lk-PGG~lvi~d~~~ 159 (263)
T PTZ00098 105 ANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLK-PNGILLITDYCA 159 (263)
T ss_pred ECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcC-CCcEEEEEEecc
Confidence 36777889999999999996 5775 89999999999999 999999977643
No 14
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.49 E-value=4.3e-07 Score=67.83 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=47.4
Q ss_pred ccccccCCCCCCccceEEEe--cccc-ChhhHHHHHHHHhhCCCceEEEEecCCCCCCHHHHHHH
Q 038491 3 ITELEQIVATQSSEDLVTIA--LYWF-DLPQFYKQVKWILKEPTRVIIAWTYTMPEINESAGVVF 64 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a--~hw~-D~~~~l~e~~RvLk~pgG~la~~~~~~~~~~~~~~~~~ 64 (146)
.+|++++++++++||+|++. +||+ |..++++++.|+|| |||.+.+...+.+.. +.+...+
T Consensus 102 ~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk-~gG~l~~~~~~~~~~-~~~~~~~ 164 (231)
T TIGR02752 102 HGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVK-PGGKVVCLETSQPTI-PGFKQLY 164 (231)
T ss_pred EechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcC-cCeEEEEEECCCCCC-hHHHHHH
Confidence 36778889999999999998 6665 89999999999999 999998877655432 3444433
No 15
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.43 E-value=2.5e-07 Score=73.07 Aligned_cols=48 Identities=17% Similarity=0.096 Sum_probs=42.6
Q ss_pred cccccCCCCCCccceEEEe---ccccChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 4 TELEQIVATQSSEDLVTIA---LYWFDLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a---~hw~D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
++++++|+++++||+|+|. .|+.|+..++++++|+|| |||.+++....
T Consensus 187 ~dae~l~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~Lk-PGG~liist~n 237 (322)
T PLN02396 187 TTAEKLADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTI-PNGATVLSTIN 237 (322)
T ss_pred cCHHHhhhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcC-CCcEEEEEECC
Confidence 5678899999999999999 466799999999999999 99999987654
No 16
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.42 E-value=3.1e-07 Score=69.88 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=40.4
Q ss_pred ccccccCCCCCCccceEEEe--cccc-ChhhHHHHHHHHhhCCCceEEEEec
Q 038491 3 ITELEQIVATQSSEDLVTIA--LYWF-DLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a--~hw~-D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
.+|+++++ ++++||+|++. +||+ |+.+++++++|+|| |||.+++...
T Consensus 78 ~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~l~~~~~ 127 (255)
T PRK14103 78 TGDVRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELA-PGSWIAVQVP 127 (255)
T ss_pred EcChhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCC-CCcEEEEEcC
Confidence 46777775 67899999999 8887 89999999999999 9999988643
No 17
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.42 E-value=3.8e-07 Score=69.98 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=42.3
Q ss_pred ccccccCCCCCCccceEEEe--cccc-ChhhHHHHHHHHhhCCCceEEEEec
Q 038491 3 ITELEQIVATQSSEDLVTIA--LYWF-DLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a--~hw~-D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
.++++++|+++++||+|++. +|+. |..+.+++++|+|| |||+|++...
T Consensus 134 ~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~Lk-pGG~l~i~~~ 184 (272)
T PRK11873 134 LGEIEALPVADNSVDVIISNCVINLSPDKERVFKEAFRVLK-PGGRFAISDV 184 (272)
T ss_pred EcchhhCCCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcC-CCcEEEEEEe
Confidence 46788899999999999988 6654 89999999999999 9999999764
No 18
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.36 E-value=5.6e-07 Score=71.50 Aligned_cols=47 Identities=19% Similarity=0.141 Sum_probs=42.0
Q ss_pred ccccccCCCCCCccceEEEe--c-cccChhhHHHHHHHHhhCCCceEEEEe
Q 038491 3 ITELEQIVATQSSEDLVTIA--L-YWFDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a--~-hw~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
.+|++++|+++++||+|++. + ||.|.++.++|++|+|| |||++++..
T Consensus 166 ~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLk-PGG~LvIi~ 215 (340)
T PLN02490 166 EGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLK-IGGKACLIG 215 (340)
T ss_pred eccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcC-CCcEEEEEE
Confidence 46788899999999999998 4 57799999999999999 999998865
No 19
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.30 E-value=9.8e-07 Score=72.76 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=43.1
Q ss_pred ccccccCCCCCCccceEEEe---ccccChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 3 ITELEQIVATQSSEDLVTIA---LYWFDLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a---~hw~D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
.+|+.++++++++||+|+|. .|+.|+++++++++|+|| |||.+++..+.
T Consensus 320 ~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~ 371 (475)
T PLN02336 320 VADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLK-PGGKVLISDYC 371 (475)
T ss_pred EcCcccCCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcC-CCeEEEEEEec
Confidence 36777888999999999997 577799999999999999 99999987664
No 20
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.27 E-value=8.5e-07 Score=67.55 Aligned_cols=48 Identities=19% Similarity=0.347 Sum_probs=40.3
Q ss_pred cccccCC-CCCCccceEEEe--cccc-ChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 4 TELEQIV-ATQSSEDLVTIA--LYWF-DLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 4 ~~~e~l~-~~d~s~Dlv~~a--~hw~-D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
+++++++ +++++||+|++. +||+ |+..+++++.|+|| |||.+++..++
T Consensus 100 ~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~n 151 (255)
T PRK11036 100 CAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLR-PGGALSLMFYN 151 (255)
T ss_pred cCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcC-CCeEEEEEEEC
Confidence 4556653 678899999999 7776 89999999999999 99999887654
No 21
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.26 E-value=9.2e-07 Score=65.51 Aligned_cols=48 Identities=17% Similarity=0.321 Sum_probs=35.8
Q ss_pred ccccccCCCCCCccceEEEe--ccccChhhHHHHHHHHhhCCCceEEEEec
Q 038491 3 ITELEQIVATQSSEDLVTIA--LYWFDLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a--~hw~D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
.+|...+|++++++|+++.+ +==.|...++.|+.|||| |||.|.+.+-
T Consensus 110 acdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK-~~G~L~IAEV 159 (219)
T PF05148_consen 110 ACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLK-PGGILKIAEV 159 (219)
T ss_dssp ES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred EecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheec-cCcEEEEEEe
Confidence 46778899999999999999 444589999999999999 9999999764
No 22
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.21 E-value=2.1e-06 Score=65.48 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=41.4
Q ss_pred cccccCCCCCCccceEEEe--ccccChhhHHHHHHHHhhCCCceEEEEec
Q 038491 4 TELEQIVATQSSEDLVTIA--LYWFDLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a--~hw~D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
.|.-++|++|+|+|+++++ +-=.|+..|+.|++|||| |||.+.+..-
T Consensus 217 cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk-~gG~l~IAEv 265 (325)
T KOG3045|consen 217 CDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILK-PGGLLYIAEV 265 (325)
T ss_pred ccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhc-cCceEEEEeh
Confidence 4667799999999999999 545599999999999999 9999999764
No 23
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.20 E-value=5.6e-07 Score=62.92 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=38.9
Q ss_pred cCCCCCCccceEEEe--cccc-ChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 8 QIVATQSSEDLVTIA--LYWF-DLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 8 ~l~~~d~s~Dlv~~a--~hw~-D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
..+.++++||+|+|. +|++ |+..++++++|+|| |||.+++....
T Consensus 71 ~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~Lk-pgG~l~~~~~~ 117 (161)
T PF13489_consen 71 DPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLK-PGGYLVISDPN 117 (161)
T ss_dssp THHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEE-EEEEEEEEEEB
T ss_pred hhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcC-CCCEEEEEEcC
Confidence 456788999999999 7777 99999999999999 99999997654
No 24
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.09 E-value=4.2e-06 Score=63.59 Aligned_cols=45 Identities=18% Similarity=0.368 Sum_probs=38.2
Q ss_pred cccccCCCCCCccceEEEe--cccc-ChhhHHHHHHHHhhCCCceEEEEe
Q 038491 4 TELEQIVATQSSEDLVTIA--LYWF-DLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a--~hw~-D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
+|+++++ ++++||+|++. +||+ |..+++++++|+|| |||.+++..
T Consensus 83 ~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~~~~~~ 130 (258)
T PRK01683 83 ADIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLA-PGGVLAVQM 130 (258)
T ss_pred CchhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcC-CCcEEEEEC
Confidence 4666654 45699999999 8888 89999999999999 999998853
No 25
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.07 E-value=4.5e-06 Score=65.92 Aligned_cols=45 Identities=24% Similarity=0.080 Sum_probs=39.5
Q ss_pred cccccCCCCCCccceEEEe---ccccChhhHHHHHHHHhhCCCceEEEEe
Q 038491 4 TELEQIVATQSSEDLVTIA---LYWFDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a---~hw~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
++++++|+ +++||+|+|. .|..|+..++++++|+|| |||.+++..
T Consensus 179 ~d~e~lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~Lk-pGG~lvl~~ 226 (322)
T PRK15068 179 LGIEQLPA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLV-PGGELVLET 226 (322)
T ss_pred CCHHHCCC-cCCcCEEEECChhhccCCHHHHHHHHHHhcC-CCcEEEEEE
Confidence 56788888 8899999997 577799999999999999 999998754
No 26
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.07 E-value=5.4e-06 Score=65.30 Aligned_cols=46 Identities=20% Similarity=0.019 Sum_probs=38.7
Q ss_pred cccccCCCCCCccceEEEe---ccccChhhHHHHHHHHhhCCCceEEEEec
Q 038491 4 TELEQIVATQSSEDLVTIA---LYWFDLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a---~hw~D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
.+++++|.. ++||+|+|. .|+.|+..++++++|+|| |||.|++...
T Consensus 178 ~~ie~lp~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~Lk-pGG~Lvletl 226 (314)
T TIGR00452 178 LGIEQLHEL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLV-IKGELVLETL 226 (314)
T ss_pred CCHHHCCCC-CCcCEEEEcchhhccCCHHHHHHHHHHhcC-CCCEEEEEEE
Confidence 456777764 489999988 677799999999999999 9999998643
No 27
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.05 E-value=1.4e-06 Score=65.64 Aligned_cols=47 Identities=34% Similarity=0.415 Sum_probs=42.5
Q ss_pred cccccCCCCCCccceEEEe--cccc-ChhhHHHHHHHHhhCCCceEEEEec
Q 038491 4 TELEQIVATQSSEDLVTIA--LYWF-DLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a--~hw~-D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
+|-|.++|.++|||+|++. +||. |++..+.+++-.|| |.|.|...-.
T Consensus 126 ~DEE~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lK-PDg~Fiasml 175 (325)
T KOG2940|consen 126 GDEEFLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALK-PDGLFIASML 175 (325)
T ss_pred cchhcccccccchhhhhhhhhhhhhccCchHHHHHHHhcC-CCccchhHHh
Confidence 5778999999999999999 9999 89999999999999 9999866443
No 28
>PRK08317 hypothetical protein; Provisional
Probab=98.05 E-value=9.2e-06 Score=60.20 Aligned_cols=48 Identities=15% Similarity=0.166 Sum_probs=41.8
Q ss_pred cccccCCCCCCccceEEEe--c-cccChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 4 TELEQIVATQSSEDLVTIA--L-YWFDLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a--~-hw~D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
++++.+++++++||+|++. + |+.|+..++++++++|| |||.+.+....
T Consensus 76 ~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~ 126 (241)
T PRK08317 76 GDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLR-PGGRVVVLDTD 126 (241)
T ss_pred cccccCCCCCCCceEEEEechhhccCCHHHHHHHHHHHhc-CCcEEEEEecC
Confidence 5677788999999999998 4 56699999999999999 99999887643
No 29
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.03 E-value=7.1e-06 Score=63.06 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=38.0
Q ss_pred ccccccCCCCCCccceEEEe--ccccC---hhhHHHHHHHHhhCCCceEEE
Q 038491 3 ITELEQIVATQSSEDLVTIA--LYWFD---LPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a--~hw~D---~~~~l~e~~RvLk~pgG~la~ 48 (146)
.+|+.+.++++++||+|+|. +|+++ ..+++++++|+|| |||.|++
T Consensus 191 ~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~-pGG~L~l 240 (264)
T smart00138 191 KHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALK-PGGYLFL 240 (264)
T ss_pred eccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhC-CCeEEEE
Confidence 35667777788999999998 78775 4469999999999 9999987
No 30
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.02 E-value=3.2e-06 Score=54.98 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=22.8
Q ss_pred CccceEEEe--cccc-ChhhHHHHHHHHhhCCCceE
Q 038491 14 SSEDLVTIA--LYWF-DLPQFYKQVKWILKEPTRVI 46 (146)
Q Consensus 14 ~s~Dlv~~a--~hw~-D~~~~l~e~~RvLk~pgG~l 46 (146)
++||+|++. +||+ |+..+++.++++|| |||.|
T Consensus 65 ~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~-pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHHLEDIEAVLRNIYRLLK-PGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS--S-HHHHHHHHTTT-T-SS-EE
T ss_pred cccceehhhhhHhhhhhHHHHHHHHHHHcC-CCCCC
Confidence 599999999 7877 99999999999999 99986
No 31
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.01 E-value=5.8e-05 Score=56.82 Aligned_cols=47 Identities=11% Similarity=0.192 Sum_probs=37.9
Q ss_pred ccccccCCCCCCccceEEEe--ccccC---hhhHHHHHHHHhhCCCceEEEEecC
Q 038491 3 ITELEQIVATQSSEDLVTIA--LYWFD---LPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a--~hw~D---~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
.+|+++++++ ++|+|++. +||+. +..++++++|+|| |||.+++....
T Consensus 112 ~~d~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~d~~ 163 (239)
T TIGR00740 112 CNDIRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLN-PNGVLVLSEKF 163 (239)
T ss_pred ECChhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcC-CCeEEEEeecc
Confidence 3567777776 48999888 78873 5789999999999 99999997643
No 32
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.93 E-value=1.1e-05 Score=62.13 Aligned_cols=45 Identities=16% Similarity=0.199 Sum_probs=36.9
Q ss_pred ccccccCCCCCCccceEEEeccccChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 3 ITELEQIVATQSSEDLVTIALYWFDLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a~hw~D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
.++++++|+++++||+|++.+- +..++|++|+|| |||.|++...+
T Consensus 139 ~~d~~~lp~~~~sfD~I~~~~~----~~~~~e~~rvLk-pgG~li~~~p~ 183 (272)
T PRK11088 139 VASSHRLPFADQSLDAIIRIYA----PCKAEELARVVK-PGGIVITVTPG 183 (272)
T ss_pred EeecccCCCcCCceeEEEEecC----CCCHHHHHhhcc-CCCEEEEEeCC
Confidence 4678899999999999998721 345789999999 99999887643
No 33
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.91 E-value=2.6e-05 Score=57.43 Aligned_cols=51 Identities=25% Similarity=0.356 Sum_probs=42.6
Q ss_pred ccccccCCCCCCccceEEEe--ccc-cChhhHHHHHHHHhhCCCceEEEEecCCC
Q 038491 3 ITELEQIVATQSSEDLVTIA--LYW-FDLPQFYKQVKWILKEPTRVIIAWTYTMP 54 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a--~hw-~D~~~~l~e~~RvLk~pgG~la~~~~~~~ 54 (146)
.+++.++++++++||+|++. +|+ .++..+++++.++|| |||++++..+..+
T Consensus 94 ~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~~ 147 (223)
T TIGR01934 94 QADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLK-PGGRLVILEFSKP 147 (223)
T ss_pred ecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcC-CCcEEEEEEecCC
Confidence 35667788888899999988 554 499999999999999 9999999876543
No 34
>PRK06922 hypothetical protein; Provisional
Probab=97.90 E-value=1.4e-05 Score=68.15 Aligned_cols=49 Identities=18% Similarity=0.113 Sum_probs=40.7
Q ss_pred cccccCC--CCCCccceEEEe--cccc--------------ChhhHHHHHHHHhhCCCceEEEEecCC
Q 038491 4 TELEQIV--ATQSSEDLVTIA--LYWF--------------DLPQFYKQVKWILKEPTRVIIAWTYTM 53 (146)
Q Consensus 4 ~~~e~l~--~~d~s~Dlv~~a--~hw~--------------D~~~~l~e~~RvLk~pgG~la~~~~~~ 53 (146)
+|+.++| +++++||+|++. +||+ ++.+++++++|+|| |||.+++.....
T Consensus 474 gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLK-PGGrLII~D~v~ 540 (677)
T PRK06922 474 GDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLK-PGGRIIIRDGIM 540 (677)
T ss_pred cchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcC-CCcEEEEEeCcc
Confidence 5777787 899999999988 7753 46889999999999 999999976433
No 35
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.86 E-value=2.1e-05 Score=57.81 Aligned_cols=45 Identities=13% Similarity=0.305 Sum_probs=35.8
Q ss_pred cccccCCCCCCccceEEEe--ccccC---hhhHHHHHHHHhhCCCceEEEEe
Q 038491 4 TELEQIVATQSSEDLVTIA--LYWFD---LPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a--~hw~D---~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
+|+++++++ ++||+|++. +||.+ ++.++++++|+|| |||.+.++.
T Consensus 85 ~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~~~~~~ 134 (197)
T PRK11207 85 VDLNNLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTK-PGGYNLIVA 134 (197)
T ss_pred cChhhCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcC-CCcEEEEEE
Confidence 455666664 579999999 78874 6799999999999 999965543
No 36
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.86 E-value=1.4e-05 Score=60.28 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=42.8
Q ss_pred cccccCCCCCCccceEEEe---ccccChhhHHHHHHHHhhCCCceEEEEecCC
Q 038491 4 TELEQIVATQSSEDLVTIA---LYWFDLPQFYKQVKWILKEPTRVIIAWTYTM 53 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a---~hw~D~~~~l~e~~RvLk~pgG~la~~~~~~ 53 (146)
.++|++-...++||+|+|. -|..|++.++..+.+.|| |||.+.+.+-+.
T Consensus 113 ~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvk-P~G~lf~STinr 164 (243)
T COG2227 113 ATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVK-PGGILFLSTINR 164 (243)
T ss_pred hhHHHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcC-CCcEEEEecccc
Confidence 4567777777899999999 699999999999999999 999999977543
No 37
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.85 E-value=1.7e-05 Score=55.62 Aligned_cols=48 Identities=21% Similarity=0.310 Sum_probs=40.2
Q ss_pred ccccccCC--CCCCccceEEEe--cccc-ChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 3 ITELEQIV--ATQSSEDLVTIA--LYWF-DLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 3 ~~~~e~l~--~~d~s~Dlv~~a--~hw~-D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
.+|+++++ ++ +.||+|++. +|++ |+..+++++.|+|| |||.+.+..+.
T Consensus 60 ~~d~~~l~~~~~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk-~~G~~i~~~~~ 112 (152)
T PF13847_consen 60 QGDIEDLPQELE-EKFDIIISNGVLHHFPDPEKVLKNIIRLLK-PGGILIISDPN 112 (152)
T ss_dssp ESBTTCGCGCSS-TTEEEEEEESTGGGTSHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred EeehhccccccC-CCeeEEEEcCchhhccCHHHHHHHHHHHcC-CCcEEEEEECC
Confidence 35667766 66 899999999 7776 78899999999999 99999887654
No 38
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.79 E-value=5.2e-05 Score=57.55 Aligned_cols=46 Identities=11% Similarity=0.231 Sum_probs=37.4
Q ss_pred ccccccCCCCCCccceEEEe--ccccC---hhhHHHHHHHHhhCCCceEEEEec
Q 038491 3 ITELEQIVATQSSEDLVTIA--LYWFD---LPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a--~hw~D---~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
.++++++|++ .+|+|++. +|+++ ...++++++|+|| |||.|++...
T Consensus 115 ~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~Lk-pGG~l~l~e~ 165 (247)
T PRK15451 115 EGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLN-PGGALVLSEK 165 (247)
T ss_pred eCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcC-CCCEEEEEEe
Confidence 3566777765 48999988 88875 4679999999999 9999999874
No 39
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.77 E-value=3.4e-05 Score=57.31 Aligned_cols=46 Identities=13% Similarity=0.068 Sum_probs=36.9
Q ss_pred cccccCCCCCCccceEEEe--c-cccChhhHHHHHHHHhhCCCceEEEEec
Q 038491 4 TELEQIVATQSSEDLVTIA--L-YWFDLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a--~-hw~D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
+|++..|++ ++||+|++. + |..|...++++++|+|| |||.+++...
T Consensus 57 ~d~~~~~~~-~~fD~I~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~ 105 (224)
T smart00828 57 RDSAKDPFP-DTYDLVFGFEVIHHIKDKMDLFSNISRHLK-DGGHLVLADF 105 (224)
T ss_pred cccccCCCC-CCCCEeehHHHHHhCCCHHHHHHHHHHHcC-CCCEEEEEEc
Confidence 345455665 489999988 4 55699999999999999 9999998654
No 40
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.76 E-value=4e-05 Score=56.23 Aligned_cols=44 Identities=7% Similarity=0.225 Sum_probs=34.4
Q ss_pred ccccCCCCCCccceEEEe--ccccC---hhhHHHHHHHHhhCCCceEEEEe
Q 038491 5 ELEQIVATQSSEDLVTIA--LYWFD---LPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 5 ~~e~l~~~d~s~Dlv~~a--~hw~D---~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
++...+++ ++||+|++. +|+++ .+..+++++|+|| |||.+.+..
T Consensus 85 d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lli~~ 133 (195)
T TIGR00477 85 DINAAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTR-PGGYNLIVA 133 (195)
T ss_pred cchhcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCcEEEEEE
Confidence 44445554 589999998 88874 5789999999999 999966654
No 41
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.72 E-value=9.7e-06 Score=66.79 Aligned_cols=43 Identities=14% Similarity=0.266 Sum_probs=37.1
Q ss_pred ccCCCCCCccceEEEe---cccc-ChhhHHHHHHHHhhCCCceEEEEe
Q 038491 7 EQIVATQSSEDLVTIA---LYWF-DLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 7 e~l~~~d~s~Dlv~~a---~hw~-D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
..|||++++||+|.|+ ..|. +-...|-|+.|||| |||.+++..
T Consensus 173 ~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLR-pGGyfv~S~ 219 (506)
T PF03141_consen 173 QRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLR-PGGYFVLSG 219 (506)
T ss_pred ccccCCccchhhhhcccccccchhcccceeehhhhhhc-cCceEEecC
Confidence 5799999999999999 6787 34678999999999 999987654
No 42
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.69 E-value=4.9e-05 Score=56.09 Aligned_cols=48 Identities=23% Similarity=0.199 Sum_probs=39.0
Q ss_pred cccc-ccCC--CCCCccceEEEe--ccccC---------hhhHHHHHHHHhhCCCceEEEEec
Q 038491 3 ITEL-EQIV--ATQSSEDLVTIA--LYWFD---------LPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 3 ~~~~-e~l~--~~d~s~Dlv~~a--~hw~D---------~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
.+++ +.++ +++++||+|++. .+|.. .+.++++++|+|| |||.|++...
T Consensus 96 ~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~~~ 157 (202)
T PRK00121 96 CGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLK-PGGEIHFATD 157 (202)
T ss_pred ecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcC-CCCEEEEEcC
Confidence 3566 6677 888999999998 56653 5789999999999 9999998653
No 43
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.65 E-value=1.5e-05 Score=52.03 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=35.2
Q ss_pred ccccccCCCCCCccceEEEe---ccccC---hhhHHHHHHHHhhCCCc
Q 038491 3 ITELEQIVATQSSEDLVTIA---LYWFD---LPQFYKQVKWILKEPTR 44 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a---~hw~D---~~~~l~e~~RvLk~pgG 44 (146)
.+|++++++.+++||+|++. +|.++ ..++++++.++|| |||
T Consensus 55 ~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~-pgG 101 (101)
T PF13649_consen 55 QADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLR-PGG 101 (101)
T ss_dssp ESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEE-EEE
T ss_pred ECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhC-CCC
Confidence 47888899999999999994 56675 6889999999999 998
No 44
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.62 E-value=0.00011 Score=54.69 Aligned_cols=41 Identities=10% Similarity=0.073 Sum_probs=33.6
Q ss_pred CCCCccceEEEe--ccccC-----h-------hhHHHHHHHHhhCCCceEEEEecC
Q 038491 11 ATQSSEDLVTIA--LYWFD-----L-------PQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 11 ~~d~s~Dlv~~a--~hw~D-----~-------~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
+++++||+|+|. .||.. . ..+++++.|+|| |||.|++..+.
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lk-pGG~~vi~~~~ 167 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLA-PGGSFVVKVFQ 167 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEEec
Confidence 678899999997 66653 1 468999999999 99999996654
No 45
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.61 E-value=0.00014 Score=54.00 Aligned_cols=50 Identities=26% Similarity=0.358 Sum_probs=41.6
Q ss_pred cccccCCCCCCccceEEEe--cc-ccChhhHHHHHHHHhhCCCceEEEEecCCC
Q 038491 4 TELEQIVATQSSEDLVTIA--LY-WFDLPQFYKQVKWILKEPTRVIIAWTYTMP 54 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a--~h-w~D~~~~l~e~~RvLk~pgG~la~~~~~~~ 54 (146)
++++++++++++||+|++. +| +.++...+.++.++|+ |||.+.+.....+
T Consensus 110 ~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~-~gG~li~~~~~~~ 162 (239)
T PRK00216 110 GDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLK-PGGRLVILEFSKP 162 (239)
T ss_pred cccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhcc-CCcEEEEEEecCC
Confidence 5666777888899999988 54 5599999999999999 9999988776544
No 46
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.61 E-value=7.4e-05 Score=61.69 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=37.0
Q ss_pred cCCCCCCccceEEEe--ccccC---hhhHHHHHHHHhhCCCceEEEEec
Q 038491 8 QIVATQSSEDLVTIA--LYWFD---LPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 8 ~l~~~d~s~Dlv~~a--~hw~D---~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
.+|+++++||+|++. +|++. +..++++++|+|| |||.+++..+
T Consensus 96 ~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk-~gG~l~~~d~ 143 (475)
T PLN02336 96 DLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLK-VGGYIFFRES 143 (475)
T ss_pred ccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcC-CCeEEEEEec
Confidence 578899999999998 77763 5789999999999 9999988654
No 47
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.52 E-value=3e-05 Score=55.02 Aligned_cols=41 Identities=12% Similarity=0.042 Sum_probs=34.9
Q ss_pred cCCCCCCccceEEEe---cccc--ChhhHHHHHHHHhhCCCceEEEE
Q 038491 8 QIVATQSSEDLVTIA---LYWF--DLPQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 8 ~l~~~d~s~Dlv~~a---~hw~--D~~~~l~e~~RvLk~pgG~la~~ 49 (146)
..+|.|+|+|+|.|. -|.. .-..+++|++|+|| |||.|-+.
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lr-p~G~LriA 85 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLR-PGGKLRIA 85 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-cCcEEEEE
Confidence 368999999999998 4755 56679999999999 99999774
No 48
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.51 E-value=0.00016 Score=52.90 Aligned_cols=44 Identities=20% Similarity=0.189 Sum_probs=37.3
Q ss_pred ccccccCCCCCCccceEEEe-ccccChhhHHHHHHHHhhCCCceEEEEe
Q 038491 3 ITELEQIVATQSSEDLVTIA-LYWFDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a-~hw~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
.+++++++. +++||+|++. +. +++.++++++|+|| |||.+++..
T Consensus 101 ~~d~~~~~~-~~~fDlV~~~~~~--~~~~~l~~~~~~Lk-pGG~lv~~~ 145 (187)
T PRK00107 101 HGRAEEFGQ-EEKFDVVTSRAVA--SLSDLVELCLPLLK-PGGRFLALK 145 (187)
T ss_pred eccHhhCCC-CCCccEEEEcccc--CHHHHHHHHHHhcC-CCeEEEEEe
Confidence 356777776 7899999998 54 78999999999999 999998874
No 49
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.49 E-value=0.00011 Score=59.05 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=43.2
Q ss_pred cccccCCCCCCccceEEEe---ccccChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 4 TELEQIVATQSSEDLVTIA---LYWFDLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a---~hw~D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
+++-+.|++|++||.+-+. .|-.+...+++|++|||| |||+++...+.
T Consensus 167 ~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~k-pGG~~i~~e~i 217 (364)
T KOG1269|consen 167 ADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLK-PGGLFIVKEWI 217 (364)
T ss_pred hhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccC-CCceEEeHHHH
Confidence 5677889999999999998 799999999999999999 99999886543
No 50
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.44 E-value=0.00017 Score=52.79 Aligned_cols=47 Identities=23% Similarity=0.230 Sum_probs=36.8
Q ss_pred cccccCC---CCCCccceEEEe--ccccCh---------hhHHHHHHHHhhCCCceEEEEec
Q 038491 4 TELEQIV---ATQSSEDLVTIA--LYWFDL---------PQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 4 ~~~e~l~---~~d~s~Dlv~~a--~hw~D~---------~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
+|+..++ ++++++|.|++. -+|... +.++++++|+|| |||.|.+.+.
T Consensus 73 ~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lk-pgG~l~~~td 133 (194)
T TIGR00091 73 GDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLK-KGGVIHFKTD 133 (194)
T ss_pred cCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhC-CCCEEEEEeC
Confidence 4555543 567799999988 577643 579999999999 9999988653
No 51
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.34 E-value=0.00026 Score=54.88 Aligned_cols=43 Identities=14% Similarity=0.271 Sum_probs=34.1
Q ss_pred ccccCCCCCCccceEEEe--ccccC---hhhHHHHHHHHhhCCCceEEEE
Q 038491 5 ELEQIVATQSSEDLVTIA--LYWFD---LPQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 5 ~~e~l~~~d~s~Dlv~~a--~hw~D---~~~~l~e~~RvLk~pgG~la~~ 49 (146)
|+++.++ +++||+|++. +|+++ .+.++++++|+|| |||.+.+.
T Consensus 175 D~~~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~Lk-pgG~~l~v 222 (287)
T PRK12335 175 DINSASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTN-PGGYNLIV 222 (287)
T ss_pred chhcccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcC-CCcEEEEE
Confidence 4444444 6789999998 78774 6779999999999 99996664
No 52
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.30 E-value=0.00038 Score=50.63 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=35.2
Q ss_pred cccccCCCCCCccceEEEe-ccccChhhHHHHHHHHhhCCCceEEEEe
Q 038491 4 TELEQIVATQSSEDLVTIA-LYWFDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a-~hw~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
+++++++ .+++||+|++. +| +.+..+++++|+|| |||.++++.
T Consensus 99 ~d~~~~~-~~~~fD~I~s~~~~--~~~~~~~~~~~~Lk-pgG~lvi~~ 142 (181)
T TIGR00138 99 GRAEDFQ-HEEQFDVITSRALA--SLNVLLELTLNLLK-VGGYFLAYK 142 (181)
T ss_pred cchhhcc-ccCCccEEEehhhh--CHHHHHHHHHHhcC-CCCEEEEEc
Confidence 5666664 46799999988 55 67889999999999 999998864
No 53
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.18 E-value=0.00058 Score=50.56 Aligned_cols=48 Identities=27% Similarity=0.309 Sum_probs=37.7
Q ss_pred cccccCCCC-CCccceEEEe--ccc-cChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 4 TELEQIVAT-QSSEDLVTIA--LYW-FDLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 4 ~~~e~l~~~-d~s~Dlv~~a--~hw-~D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
+++++++.+ +++||+|++. +|+ -++..+++++.++|+ |||.+.+....
T Consensus 100 ~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~i~~~~ 151 (224)
T TIGR01983 100 TSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLK-PGGILFFSTIN 151 (224)
T ss_pred CCHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcC-CCcEEEEEecC
Confidence 455555544 3799999998 554 499999999999999 99998876543
No 54
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.03 E-value=0.0011 Score=53.68 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=33.2
Q ss_pred CCccceEEEe--cccc---ChhhHHHHHHHHhhCCCceEEEEecCC
Q 038491 13 QSSEDLVTIA--LYWF---DLPQFYKQVKWILKEPTRVIIAWTYTM 53 (146)
Q Consensus 13 d~s~Dlv~~a--~hw~---D~~~~l~e~~RvLk~pgG~la~~~~~~ 53 (146)
+++||+|++. +|++ +++.++++++|+|| |||.+++...+.
T Consensus 226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~Lk-pGG~lvl~~i~~ 270 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLK-PDGLFLLHTIGS 270 (383)
T ss_pred CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcC-CCcEEEEEEccC
Confidence 4789999988 6665 35789999999999 999999876543
No 55
>PLN03075 nicotianamine synthase; Provisional
Probab=97.00 E-value=0.0012 Score=51.71 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=35.6
Q ss_pred cccccCCCCCCccceEEEe-cc-c--cChhhHHHHHHHHhhCCCceEEEEe
Q 038491 4 TELEQIVATQSSEDLVTIA-LY-W--FDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a-~h-w--~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
+|+-+.+-..+.||+|+++ +| | -+..+.+..++|.|| |||.+.+-.
T Consensus 184 ~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~Lk-PGG~Lvlr~ 233 (296)
T PLN03075 184 ADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMA-PGALLMLRS 233 (296)
T ss_pred CchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcC-CCcEEEEec
Confidence 3444443335789999999 54 5 389999999999999 999998854
No 56
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.98 E-value=0.0015 Score=48.40 Aligned_cols=64 Identities=17% Similarity=0.342 Sum_probs=44.8
Q ss_pred CCCccceEEEe--cc---ccChhhHHHHHHHHhhCCCceEEEEec-CC-CCCCHHHHHHHHHhhhhccCCCch
Q 038491 12 TQSSEDLVTIA--LY---WFDLPQFYKQVKWILKEPTRVIIAWTY-TM-PEINESAGVVFKSFDRVDCEPFWK 77 (146)
Q Consensus 12 ~d~s~Dlv~~a--~h---w~D~~~~l~e~~RvLk~pgG~la~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 77 (146)
..+++|+|+|+ +| |-..+..++.+.++|+ |||.|++.+- .. ...+++-+..+..... .-.|.|+
T Consensus 99 ~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~-~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr-~rdp~~G 169 (204)
T PF06080_consen 99 SPESFDAIFCINMLHISPWSAVEGLFAGAARLLK-PGGLLFLYGPFNRDGKFTSESNAAFDASLR-SRDPEWG 169 (204)
T ss_pred CCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCC-CCCEEEEeCCcccCCEeCCcHHHHHHHHHh-cCCCCcC
Confidence 46799999999 67 5567889999999999 9999988751 11 1123444555665544 4466776
No 57
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=96.97 E-value=0.0013 Score=52.42 Aligned_cols=40 Identities=5% Similarity=-0.075 Sum_probs=34.2
Q ss_pred CCccceEEEe--cccc------ChhhHHHHHHHHhhCCCceEEEEecCC
Q 038491 13 QSSEDLVTIA--LYWF------DLPQFYKQVKWILKEPTRVIIAWTYTM 53 (146)
Q Consensus 13 d~s~Dlv~~a--~hw~------D~~~~l~e~~RvLk~pgG~la~~~~~~ 53 (146)
+++||+|++. +|+- ..+++++++.|.|| |||.|.++.+..
T Consensus 259 ~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lk-pgG~L~iVan~~ 306 (342)
T PRK09489 259 KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLN-SGGELRIVANAF 306 (342)
T ss_pred CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcC-cCCEEEEEEeCC
Confidence 5789999999 8862 35789999999999 999999887654
No 58
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.96 E-value=0.0034 Score=45.14 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=31.0
Q ss_pred CCccceEEEe--cccc-C---------------------hhhHHHHHHHHhhCCCceEEEEecCC
Q 038491 13 QSSEDLVTIA--LYWF-D---------------------LPQFYKQVKWILKEPTRVIIAWTYTM 53 (146)
Q Consensus 13 d~s~Dlv~~a--~hw~-D---------------------~~~~l~e~~RvLk~pgG~la~~~~~~ 53 (146)
+++||+|++. +|-. + ...+++++.|+|| |||++++.....
T Consensus 80 ~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-~gG~~~~~~~~~ 143 (179)
T TIGR00537 80 RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILK-EGGRVQLIQSSL 143 (179)
T ss_pred CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhC-CCCEEEEEEecc
Confidence 4589999998 5422 1 3568999999999 999998876543
No 59
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=96.96 E-value=0.0015 Score=46.79 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=33.3
Q ss_pred CCCCccceEEEe--ccccC------hhhHHHHHHHHhhCCCceEEEEecC
Q 038491 11 ATQSSEDLVTIA--LYWFD------LPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 11 ~~d~s~Dlv~~a--~hw~D------~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
+++++||+|++. +|.-. ..+++.++.+.|| |||.+.+....
T Consensus 94 ~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk-~~G~l~lv~~~ 142 (170)
T PF05175_consen 94 LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLK-PGGRLFLVINS 142 (170)
T ss_dssp CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEE-EEEEEEEEEET
T ss_pred ccccceeEEEEccchhcccccchhhHHHHHHHHHHhcc-CCCEEEEEeec
Confidence 447899999999 77663 4789999999999 99999876653
No 60
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.96 E-value=0.0019 Score=51.02 Aligned_cols=49 Identities=12% Similarity=0.061 Sum_probs=39.1
Q ss_pred ccccccCCCCCCccceEEEe--c--------ccc-C-hhhHHHHHHHHhhCCCceEEEEecC
Q 038491 3 ITELEQIVATQSSEDLVTIA--L--------YWF-D-LPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a--~--------hw~-D-~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
.+|+.++|+++++||+|++. + |.. + ...++++++|+|| |||.++++..+
T Consensus 236 ~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk-~gG~lv~~~~~ 296 (329)
T TIGR01177 236 RGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLK-SEGWIVYAVPT 296 (329)
T ss_pred ecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHcc-CCcEEEEEEcC
Confidence 46888899989999999995 2 111 1 4789999999999 99999887644
No 61
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=96.93 E-value=0.0018 Score=42.96 Aligned_cols=38 Identities=18% Similarity=0.099 Sum_probs=30.7
Q ss_pred CCCCccceEEEe--ccccChhhHHHHHHHHhhCCCceEEEEec
Q 038491 11 ATQSSEDLVTIA--LYWFDLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 11 ~~d~s~Dlv~~a--~hw~D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
...++||.|++. .+ +.++++++++|+|| |||+|.+..+
T Consensus 84 ~~~~~~D~v~~~~~~~--~~~~~l~~~~~~Lk-~gG~li~~~~ 123 (124)
T TIGR02469 84 DSLPEPDRVFIGGSGG--LLQEILEAIWRRLR-PGGRIVLNAI 123 (124)
T ss_pred hhcCCCCEEEECCcch--hHHHHHHHHHHHcC-CCCEEEEEec
Confidence 334689999988 44 35689999999999 9999988654
No 62
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.91 E-value=0.0017 Score=49.33 Aligned_cols=46 Identities=17% Similarity=0.243 Sum_probs=38.1
Q ss_pred CCCCCCccceEEEe-----ccccChhhHHHHHHHHhhCCCceEEEEecCCCC
Q 038491 9 IVATQSSEDLVTIA-----LYWFDLPQFYKQVKWILKEPTRVIIAWTYTMPE 55 (146)
Q Consensus 9 l~~~d~s~Dlv~~a-----~hw~D~~~~l~e~~RvLk~pgG~la~~~~~~~~ 55 (146)
-|.+.+|+|.||+- .|=--.+.+++.++|+|| |||.+.+-.|+...
T Consensus 138 ~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llK-PGG~llfrDYg~~D 188 (264)
T KOG2361|consen 138 EPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLK-PGGSLLFRDYGRYD 188 (264)
T ss_pred CCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhC-CCcEEEEeecccch
Confidence 46788999999988 343346789999999999 99999999998643
No 63
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.91 E-value=0.002 Score=52.11 Aligned_cols=41 Identities=7% Similarity=-0.050 Sum_probs=33.6
Q ss_pred CCCCccceEEEe--ccccC------hhhHHHHHHHHhhCCCceEEEEecC
Q 038491 11 ATQSSEDLVTIA--LYWFD------LPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 11 ~~d~s~Dlv~~a--~hw~D------~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
+++++||+|+|. +|+-. ..+.+++++|+|| |||.|.+..+.
T Consensus 294 ~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lk-pGG~L~iV~nr 342 (378)
T PRK15001 294 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLK-INGELYIVANR 342 (378)
T ss_pred CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcc-cCCEEEEEEec
Confidence 345689999999 88652 4678999999999 99999998654
No 64
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=96.90 E-value=0.0015 Score=53.00 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=38.0
Q ss_pred cccccC--CCCCCccceEEEe--ccccCh-------hhHHHHHHHHhhCCCceEEEEecC
Q 038491 4 TELEQI--VATQSSEDLVTIA--LYWFDL-------PQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 4 ~~~e~l--~~~d~s~Dlv~~a--~hw~D~-------~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
+|+..+ .++++++|.|++. -.|.-. +.++.+++|+|| |||.+.+.+..
T Consensus 179 ~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLk-pGG~l~l~TD~ 237 (390)
T PRK14121 179 YDARLLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLK-PGGTLELRTDS 237 (390)
T ss_pred CCHHHhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcC-CCcEEEEEEEC
Confidence 456554 5889999999987 566521 689999999999 99999997643
No 65
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.82 E-value=0.001 Score=51.54 Aligned_cols=49 Identities=8% Similarity=0.177 Sum_probs=40.9
Q ss_pred cccccCCCCCCccceEEEe--ccccC----hhhHHHHHHHHhhCCCceEEEEecCC
Q 038491 4 TELEQIVATQSSEDLVTIA--LYWFD----LPQFYKQVKWILKEPTRVIIAWTYTM 53 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a--~hw~D----~~~~l~e~~RvLk~pgG~la~~~~~~ 53 (146)
+|+-.+|+++.+||.+.+. .||+- ...+++|+.|+|| |||...++.+..
T Consensus 92 ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lr-pgg~~lvyvwa~ 146 (293)
T KOG1331|consen 92 ADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLR-PGGNALVYVWAL 146 (293)
T ss_pred hhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhc-CCCceEEEEehh
Confidence 6788999999999999976 66662 5679999999999 999877766653
No 66
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.81 E-value=0.00075 Score=44.75 Aligned_cols=46 Identities=17% Similarity=0.183 Sum_probs=33.7
Q ss_pred cccccCC--CCCCccceEEEe--ccc---------cChhhHHHHHHHHhhCCCceEEEEe
Q 038491 4 TELEQIV--ATQSSEDLVTIA--LYW---------FDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 4 ~~~e~l~--~~d~s~Dlv~~a--~hw---------~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
+|+.+++ +++++||+|++. ++- -....+++++.|+|| |||+++++.
T Consensus 57 ~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~-~gG~~~~~~ 115 (117)
T PF13659_consen 57 GDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLK-PGGVLVFIT 115 (117)
T ss_dssp SHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred CchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcC-CCeEEEEEe
Confidence 3445554 789999999999 431 124678999999999 999998875
No 67
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.79 E-value=0.0021 Score=50.43 Aligned_cols=44 Identities=20% Similarity=0.086 Sum_probs=39.5
Q ss_pred ccccCCCCCCccceEEEe---ccccChhhHHHHHHHHhhCCCceEEEEe
Q 038491 5 ELEQIVATQSSEDLVTIA---LYWFDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 5 ~~e~l~~~d~s~Dlv~~a---~hw~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
.+|++|. .++||.|.|. .|-.|+-..|.+++..|| |||.|++=+
T Consensus 173 gvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~-~gGeLvLET 219 (315)
T PF08003_consen 173 GVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLR-PGGELVLET 219 (315)
T ss_pred chhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhC-CCCEEEEEE
Confidence 4678887 7899999988 799999999999999999 999998744
No 68
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=96.76 E-value=0.0024 Score=47.71 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=36.7
Q ss_pred ccccCC-CCCCccceEEEe--c-cccChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 5 ELEQIV-ATQSSEDLVTIA--L-YWFDLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 5 ~~e~l~-~~d~s~Dlv~~a--~-hw~D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
++++++ ..+++||+|++. + |..|+...++.+.++|+ |||.+++....
T Consensus 103 ~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~v~~~~ 153 (233)
T PRK05134 103 TAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVK-PGGLVFFSTLN 153 (233)
T ss_pred CHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcC-CCcEEEEEecC
Confidence 334443 355799999998 4 55699999999999999 99999876543
No 69
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=96.72 E-value=0.0013 Score=47.92 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=31.7
Q ss_pred ccccc-C-CCCCCccceEEEe--cccc-ChhhHHHHHHHHhhCCC
Q 038491 4 TELEQ-I-VATQSSEDLVTIA--LYWF-DLPQFYKQVKWILKEPT 43 (146)
Q Consensus 4 ~~~e~-l-~~~d~s~Dlv~~a--~hw~-D~~~~l~e~~RvLk~pg 43 (146)
+++++ + ++++++||+|++. +|++ |+..+++++.|+++ ++
T Consensus 62 ~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~-~~ 105 (194)
T TIGR02081 62 GDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGR-HA 105 (194)
T ss_pred EEhhhcccccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC-eE
Confidence 45554 4 4788999999999 7777 99999999999888 53
No 70
>PRK06202 hypothetical protein; Provisional
Probab=96.70 E-value=0.0025 Score=47.74 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=30.9
Q ss_pred cccccCCCCCCccceEEEe--ccccC---hhhHHHHHHHHhh
Q 038491 4 TELEQIVATQSSEDLVTIA--LYWFD---LPQFYKQVKWILK 40 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a--~hw~D---~~~~l~e~~RvLk 40 (146)
.+++.+++++++||+|++. +|+++ ...++++++|++|
T Consensus 118 ~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 118 AVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred EecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC
Confidence 4556778888999999999 88884 3579999999998
No 71
>PRK13699 putative methylase; Provisional
Probab=96.69 E-value=0.002 Score=48.53 Aligned_cols=46 Identities=9% Similarity=0.183 Sum_probs=33.9
Q ss_pred cccccC--CCCCCccceEEEe--cc--cc---C-----------hhhHHHHHHHHhhCCCceEEEEe
Q 038491 4 TELEQI--VATQSSEDLVTIA--LY--WF---D-----------LPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 4 ~~~e~l--~~~d~s~Dlv~~a--~h--w~---D-----------~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
+|+-++ .++++|+|+|+.- +. .- + ...++.|++|||| |||.++++.
T Consensus 7 gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLK-pgg~l~if~ 72 (227)
T PRK13699 7 GNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLK-KDALMVSFY 72 (227)
T ss_pred chHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcC-CCCEEEEEe
Confidence 455444 6999999999988 31 00 1 2478899999999 999988754
No 72
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.66 E-value=0.0023 Score=48.51 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=34.1
Q ss_pred cccccC--CCCCCccceEEEe---c-c--ccChhhHHHHHHHHhhCCCceEEEEec
Q 038491 4 TELEQI--VATQSSEDLVTIA---L-Y--WFDLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 4 ~~~e~l--~~~d~s~Dlv~~a---~-h--w~D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
+|+.+. .|+|+|||+|+-- | | =.=-+.|+.|++|||| |||.+.....
T Consensus 192 GD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLk-rgGrlFHYvG 246 (287)
T COG2521 192 GDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILK-RGGRLFHYVG 246 (287)
T ss_pred ccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcC-cCCcEEEEeC
Confidence 455554 4999999999854 1 1 1124679999999999 9999877654
No 73
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=96.63 E-value=0.0029 Score=48.97 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=30.5
Q ss_pred ccceEEEe---ccc--cChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 15 SEDLVTIA---LYW--FDLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 15 s~Dlv~~a---~hw--~D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
+||.|++. -|. -+.+.++++++|+|| |||.+++-...
T Consensus 127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk-pgG~~~lq~i~ 168 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLK-PGGRLVLQTIT 168 (273)
T ss_dssp S-SEEEEESEGGGTCGGGHHHHHHHHHHHSE-TTEEEEEEEEE
T ss_pred CCCEEEEEechhhcChhHHHHHHHHHHHhcC-CCcEEEEEecc
Confidence 89999998 476 367899999999999 99999875443
No 74
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=96.61 E-value=0.004 Score=48.57 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=34.2
Q ss_pred cccccCCCCCCccceEEEe--cc-ccCh--hhHHHHHHHHhhCCCceEEEEecC
Q 038491 4 TELEQIVATQSSEDLVTIA--LY-WFDL--PQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a--~h-w~D~--~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
+|+.+.++++ +|+|++. +| |-+. .+.+++++|+|| |||++++....
T Consensus 206 ~d~~~~~~~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~-pgG~l~i~d~~ 256 (306)
T TIGR02716 206 VDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMR-SGGRLLILDMV 256 (306)
T ss_pred cCccCCCCCC--CCEEEeEhhhhcCChHHHHHHHHHHHHhcC-CCCEEEEEEec
Confidence 4555445554 6999877 55 5443 469999999999 99999998753
No 75
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=96.54 E-value=0.0026 Score=48.81 Aligned_cols=38 Identities=21% Similarity=0.134 Sum_probs=34.0
Q ss_pred ccceEEEe---ccccChhhHHHHHHHHhhCCCceEEEEecCC
Q 038491 15 SEDLVTIA---LYWFDLPQFYKQVKWILKEPTRVIIAWTYTM 53 (146)
Q Consensus 15 s~Dlv~~a---~hw~D~~~~l~e~~RvLk~pgG~la~~~~~~ 53 (146)
.||.|+|. -|.-|++.++.-+.+.|| |||.+.+.+-..
T Consensus 158 ~fDaVvcsevleHV~dp~~~l~~l~~~lk-P~G~lfittinr 198 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHVKDPQEFLNCLSALLK-PNGRLFITTINR 198 (282)
T ss_pred ccceeeeHHHHHHHhCHHHHHHHHHHHhC-CCCceEeeehhh
Confidence 39999999 689999999999999999 999999876543
No 76
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.45 E-value=0.0056 Score=38.22 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=31.7
Q ss_pred CCCccceEEEe--ccc--cChhhHHHHHHHHhhCCCceEEEE
Q 038491 12 TQSSEDLVTIA--LYW--FDLPQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 12 ~d~s~Dlv~~a--~hw--~D~~~~l~e~~RvLk~pgG~la~~ 49 (146)
..+++|+|++. +|+ -+....++.+.++|| |||.+++.
T Consensus 63 ~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~-~~g~~~~~ 103 (107)
T cd02440 63 ADESFDVIISDPPLHHLVEDLARFLEEARRLLK-PGGVLVLT 103 (107)
T ss_pred cCCceEEEEEccceeehhhHHHHHHHHHHHHcC-CCCEEEEE
Confidence 56789999999 554 478999999999999 99999774
No 77
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.43 E-value=0.0093 Score=43.20 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=31.3
Q ss_pred CCCCccceEEEe--c----ccc-C-------hhhHHHHHHHHhhCCCceEEEEec
Q 038491 11 ATQSSEDLVTIA--L----YWF-D-------LPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 11 ~~d~s~Dlv~~a--~----hw~-D-------~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
+++++||+|++. . +|. + .+.++.++.++|| |||++++..+
T Consensus 94 ~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lvi~~~ 147 (188)
T TIGR00438 94 VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLK-PKGNFVVKVF 147 (188)
T ss_pred hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHcc-CCCEEEEEEc
Confidence 567789999984 2 232 3 3689999999999 9999998654
No 78
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=96.39 E-value=0.0037 Score=46.12 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=31.2
Q ss_pred CCCCccceEEEe--ccccC----hhhHHHHHHHHhhCCCceEEEEec
Q 038491 11 ATQSSEDLVTIA--LYWFD----LPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 11 ~~d~s~Dlv~~a--~hw~D----~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
.|+++||+|+++ +|+++ +..++..+...|+ |||.+++-..
T Consensus 102 ~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~-pgG~LV~g~~ 147 (201)
T PF05401_consen 102 WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALA-PGGHLVFGHA 147 (201)
T ss_dssp --SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEE-EEEEEEEEEE
T ss_pred CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhC-CCCEEEEEEe
Confidence 578999999999 77774 3468899999999 9999988654
No 79
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=96.38 E-value=0.0025 Score=47.79 Aligned_cols=37 Identities=24% Similarity=0.450 Sum_probs=34.4
Q ss_pred CCCccceEEEe--cccc-ChhhHHHHHHHHhhCCCceEEEE
Q 038491 12 TQSSEDLVTIA--LYWF-DLPQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 12 ~d~s~Dlv~~a--~hw~-D~~~~l~e~~RvLk~pgG~la~~ 49 (146)
|+..+|++.++ +||. |..+.+...-.-|. |||+||+-
T Consensus 89 p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~-Pgg~LAVQ 128 (257)
T COG4106 89 PEQPTDLLFANAVLQWLPDHPELLPRLVSQLA-PGGVLAVQ 128 (257)
T ss_pred CCCccchhhhhhhhhhccccHHHHHHHHHhhC-CCceEEEE
Confidence 56789999998 9999 99999999999999 99999994
No 80
>PTZ00146 fibrillarin; Provisional
Probab=96.35 E-value=0.0091 Score=46.69 Aligned_cols=37 Identities=11% Similarity=-0.075 Sum_probs=28.3
Q ss_pred CCCccceEEEe-ccccChhhHHHHHHHHhhCCCceEEEE
Q 038491 12 TQSSEDLVTIA-LYWFDLPQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 12 ~d~s~Dlv~~a-~hw~D~~~~l~e~~RvLk~pgG~la~~ 49 (146)
...+||+|++. .+.-+...++.+++|+|| |||.|++.
T Consensus 199 ~~~~vDvV~~Dva~pdq~~il~~na~r~LK-pGG~~vI~ 236 (293)
T PTZ00146 199 LVPMVDVIFADVAQPDQARIVALNAQYFLK-NGGHFIIS 236 (293)
T ss_pred ccCCCCEEEEeCCCcchHHHHHHHHHHhcc-CCCEEEEE
Confidence 34589999998 532244466679999999 99999883
No 81
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.25 E-value=0.0077 Score=46.80 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=32.6
Q ss_pred CCCCCccceEEEeccccChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 10 VATQSSEDLVTIALYWFDLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 10 ~~~d~s~Dlv~~a~hw~D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
+..+++||+|++....-.....++++.|+|| |||.+++.+..
T Consensus 220 ~~~~~~fDlVvan~~~~~l~~ll~~~~~~Lk-pgG~li~sgi~ 261 (288)
T TIGR00406 220 QPIEGKADVIVANILAEVIKELYPQFSRLVK-PGGWLILSGIL 261 (288)
T ss_pred cccCCCceEEEEecCHHHHHHHHHHHHHHcC-CCcEEEEEeCc
Confidence 4456799999998211235689999999999 99999987653
No 82
>PRK11524 putative methyltransferase; Provisional
Probab=96.24 E-value=0.0056 Score=47.48 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=33.8
Q ss_pred cccccC--CCCCCccceEEEe--cc----ccC-------------hhhHHHHHHHHhhCCCceEEEEe
Q 038491 4 TELEQI--VATQSSEDLVTIA--LY----WFD-------------LPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 4 ~~~e~l--~~~d~s~Dlv~~a--~h----w~D-------------~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
+|+.+. .++++|||+|++. +. +.+ ....+.++.|+|| |||.+++..
T Consensus 14 gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK-~~G~i~i~~ 80 (284)
T PRK11524 14 GDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLK-KQGTMYIMN 80 (284)
T ss_pred ccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhC-CCcEEEEEc
Confidence 444443 4789999999997 31 111 2568999999999 999998853
No 83
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.24 E-value=0.0058 Score=47.68 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=29.5
Q ss_pred CCccceEEEe--cccc---ChhhHHHHHHHHhhCCCceEEE
Q 038491 13 QSSEDLVTIA--LYWF---DLPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 13 d~s~Dlv~~a--~hw~---D~~~~l~e~~RvLk~pgG~la~ 48 (146)
.+.||+|+|- +.+| +..+.++.+++.|+ |||.|.+
T Consensus 221 ~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~-pgG~L~l 260 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK-PDGLLFA 260 (287)
T ss_pred CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC-CCcEEEE
Confidence 5789999997 5555 46789999999999 9998755
No 84
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.11 E-value=0.0078 Score=44.05 Aligned_cols=37 Identities=16% Similarity=-0.067 Sum_probs=30.8
Q ss_pred CCCccceEEEeccccChhhHHHHHHHHhhCCCceEEEE
Q 038491 12 TQSSEDLVTIALYWFDLPQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 12 ~d~s~Dlv~~a~hw~D~~~~l~e~~RvLk~pgG~la~~ 49 (146)
.+++||+|++.....++...++++.|+|| |||.+++.
T Consensus 108 ~~~~~D~V~~~~~~~~~~~~l~~~~~~Lk-pgG~lv~~ 144 (198)
T PRK00377 108 INEKFDRIFIGGGSEKLKEIISASWEIIK-KGGRIVID 144 (198)
T ss_pred cCCCCCEEEECCCcccHHHHHHHHHHHcC-CCcEEEEE
Confidence 34689999997444578899999999999 99999763
No 85
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=96.02 E-value=0.016 Score=42.80 Aligned_cols=45 Identities=24% Similarity=0.266 Sum_probs=33.1
Q ss_pred ccccccCCCCCCccceEEEe--ccccC---hhhHHHHHHHHhhCCCceEEEEec
Q 038491 3 ITELEQIVATQSSEDLVTIA--LYWFD---LPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a--~hw~D---~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
.+++.+ |+++++||+|++. +|.++ +.+++++++|+++ +.+++..+
T Consensus 94 ~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~~---~~v~i~e~ 143 (204)
T TIGR03587 94 QGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCSN---RYILIAEY 143 (204)
T ss_pred EeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhcC---cEEEEEEe
Confidence 356666 8999999999998 54444 5778888888876 36666654
No 86
>PRK14967 putative methyltransferase; Provisional
Probab=96.00 E-value=0.011 Score=44.10 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=30.7
Q ss_pred CCCCccceEEEe--cccc----------------------ChhhHHHHHHHHhhCCCceEEEEec
Q 038491 11 ATQSSEDLVTIA--LYWF----------------------DLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 11 ~~d~s~Dlv~~a--~hw~----------------------D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
+++++||+|++. ++.. ....+++++.++|| |||++.+...
T Consensus 97 ~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk-~gG~l~~~~~ 160 (223)
T PRK14967 97 VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLA-PGGSLLLVQS 160 (223)
T ss_pred ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcC-CCcEEEEEEe
Confidence 567899999998 3321 14568899999999 9999987644
No 87
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.97 E-value=0.014 Score=46.63 Aligned_cols=47 Identities=13% Similarity=0.076 Sum_probs=39.2
Q ss_pred cccccCCCCCCccceEEEe--------ccccC----hhhHHHHHHHHhhCCCceEEEEec
Q 038491 4 TELEQIVATQSSEDLVTIA--------LYWFD----LPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a--------~hw~D----~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
.||..+||++++||.|.+- .+=.. ..+++..+++||| +||.++++..
T Consensus 253 ~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk-~gG~~vf~~p 311 (347)
T COG1041 253 LDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLK-PGGRIVFAAP 311 (347)
T ss_pred cccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhh-cCcEEEEecC
Confidence 4899999999999999976 22223 6789999999999 9999999865
No 88
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.94 E-value=0.01 Score=43.79 Aligned_cols=41 Identities=10% Similarity=0.015 Sum_probs=29.7
Q ss_pred cccccCCCCCCccceEEEe--ccccChhhHHHHHHHHhhCCCceEEEEe
Q 038491 4 TELEQIVATQSSEDLVTIA--LYWFDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a--~hw~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
+|+.+....+++||+|++. .+++ .+++.|+|| |||.+++-.
T Consensus 131 ~d~~~~~~~~~~fD~Ii~~~~~~~~-----~~~l~~~L~-~gG~lvi~~ 173 (205)
T PRK13944 131 GDGKRGLEKHAPFDAIIVTAAASTI-----PSALVRQLK-DGGVLVIPV 173 (205)
T ss_pred CCcccCCccCCCccEEEEccCcchh-----hHHHHHhcC-cCcEEEEEE
Confidence 4555544456799999988 4433 258899999 999997743
No 89
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.93 E-value=0.023 Score=37.26 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=36.2
Q ss_pred CCCCC-CccceEEEe--ccccChhhHHHHHHHHhhCCCceEEEEecCC
Q 038491 9 IVATQ-SSEDLVTIA--LYWFDLPQFYKQVKWILKEPTRVIIAWTYTM 53 (146)
Q Consensus 9 l~~~d-~s~Dlv~~a--~hw~D~~~~l~e~~RvLk~pgG~la~~~~~~ 53 (146)
+++.+ ..+|++.+. .|+.+....+.++.|+|+ |+|.+.+.....
T Consensus 112 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~~ 158 (257)
T COG0500 112 LPFEDSASFDLVISLLVLHLLPPAKALRELLRVLK-PGGRLVLSDLLR 158 (257)
T ss_pred CCCCCCCceeEEeeeeehhcCCHHHHHHHHHHhcC-CCcEEEEEeccC
Confidence 77887 589999433 677788999999999999 999998876543
No 90
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=95.92 E-value=0.0098 Score=38.89 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=28.8
Q ss_pred CccceEEEe-c--c-cc---ChhhHHHHHHHHhhCCCceEEEEe
Q 038491 14 SSEDLVTIA-L--Y-WF---DLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 14 ~s~Dlv~~a-~--h-w~---D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
+.||+|++. + | ++ +..++++++++.|| |||++.+..
T Consensus 69 ~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~lvi~~ 111 (112)
T PF12847_consen 69 EPFDLVICSGFTLHFLLPLDERRRVLERIRRLLK-PGGRLVINT 111 (112)
T ss_dssp SCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred CCCCEEEECCCccccccchhHHHHHHHHHHHhcC-CCcEEEEEE
Confidence 459999997 2 3 44 35789999999999 999998753
No 91
>PRK04266 fibrillarin; Provisional
Probab=95.89 E-value=0.011 Score=44.57 Aligned_cols=35 Identities=9% Similarity=0.026 Sum_probs=26.2
Q ss_pred CccceEEEecccc-ChhhHHHHHHHHhhCCCceEEEE
Q 038491 14 SSEDLVTIALYWF-DLPQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 14 ~s~Dlv~~a~hw~-D~~~~l~e~~RvLk~pgG~la~~ 49 (146)
++||+|++...-. ....++++++|+|| |||.+++.
T Consensus 140 ~~~D~i~~d~~~p~~~~~~L~~~~r~LK-pGG~lvI~ 175 (226)
T PRK04266 140 EKVDVIYQDVAQPNQAEIAIDNAEFFLK-DGGYLLLA 175 (226)
T ss_pred ccCCEEEECCCChhHHHHHHHHHHHhcC-CCcEEEEE
Confidence 5699999762212 22456899999999 99999983
No 92
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.76 E-value=0.022 Score=43.33 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=29.9
Q ss_pred CCccceEEEe--ccccChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 13 QSSEDLVTIA--LYWFDLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 13 d~s~Dlv~~a--~hw~D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
+.+||+|++. .+ .....++++.|+|| |||.+++.+..
T Consensus 177 ~~~fD~Vvani~~~--~~~~l~~~~~~~Lk-pgG~lilsgi~ 215 (250)
T PRK00517 177 DLKADVIVANILAN--PLLELAPDLARLLK-PGGRLILSGIL 215 (250)
T ss_pred CCCcCEEEEcCcHH--HHHHHHHHHHHhcC-CCcEEEEEECc
Confidence 3379999998 33 35678999999999 99999997653
No 93
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.71 E-value=0.0055 Score=41.01 Aligned_cols=33 Identities=27% Similarity=0.631 Sum_probs=27.3
Q ss_pred ccceEEEe-------ccccC--hhhHHHHHHHHhhCCCceEEE
Q 038491 15 SEDLVTIA-------LYWFD--LPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 15 s~Dlv~~a-------~hw~D--~~~~l~e~~RvLk~pgG~la~ 48 (146)
.||+|.|- +||=| +..+++.+++.|+ |||.|.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~-pGG~lil 42 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLR-PGGILIL 42 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhC-CCCEEEE
Confidence 38999988 34555 6679999999999 9999988
No 94
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=95.61 E-value=0.014 Score=46.19 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=32.9
Q ss_pred cCCCCCCccceEEEe--cccc--C---hhhHHHHHHHHhhCCCceEEE
Q 038491 8 QIVATQSSEDLVTIA--LYWF--D---LPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 8 ~l~~~d~s~Dlv~~a--~hw~--D---~~~~l~e~~RvLk~pgG~la~ 48 (146)
.++++|-+||+|.|. +|+- + ...++..+.+.|| |||++.-
T Consensus 189 ~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lk-pGG~FIg 235 (389)
T KOG1975|consen 189 LLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLK-PGGVFIG 235 (389)
T ss_pred hccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcC-CCcEEEE
Confidence 356778889999999 7854 3 5568999999999 9999866
No 95
>PRK00811 spermidine synthase; Provisional
Probab=95.59 E-value=0.039 Score=42.83 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=30.0
Q ss_pred CCCCccceEEEe--ccccC-----hhhHHHHHHHHhhCCCceEEEEe
Q 038491 11 ATQSSEDLVTIA--LYWFD-----LPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 11 ~~d~s~Dlv~~a--~hw~D-----~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
..+++||+|++- -++.. ...+++.++|.|+ |||++++..
T Consensus 146 ~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~-~gGvlv~~~ 191 (283)
T PRK00811 146 ETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALK-EDGIFVAQS 191 (283)
T ss_pred hCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEEeC
Confidence 356789999986 23321 2678999999999 999998864
No 96
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=95.57 E-value=0.045 Score=44.99 Aligned_cols=48 Identities=17% Similarity=0.283 Sum_probs=34.6
Q ss_pred cccccCC----CCCCccceEEEe--------c------cccC-----------hhhHHHHHHHHhhCCCceEEEEecC
Q 038491 4 TELEQIV----ATQSSEDLVTIA--------L------YWFD-----------LPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 4 ~~~e~l~----~~d~s~Dlv~~a--------~------hw~D-----------~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
+|+.+++ +.+++||.|++- + +|.- ..+.+.++.++|| |||.|++.+++
T Consensus 310 ~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk-pgG~lvystcs 386 (434)
T PRK14901 310 ADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLK-PGGTLVYATCT 386 (434)
T ss_pred CChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCC
Confidence 4555555 456899999962 1 2321 3577999999999 99999887764
No 97
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.56 E-value=0.013 Score=48.80 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=36.4
Q ss_pred cccCCCCCCccceEEEe--c-cc---cChhhHHHHHHHHhhCCCceEEEEe
Q 038491 6 LEQIVATQSSEDLVTIA--L-YW---FDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 6 ~e~l~~~d~s~Dlv~~a--~-hw---~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
.|.++.=+.++|||.+. | +| .+....+-|+.|+|| |||.+.+-.
T Consensus 418 CE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILR-P~G~~iiRD 467 (506)
T PF03141_consen 418 CEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILR-PGGWVIIRD 467 (506)
T ss_pred hhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcC-CCceEEEec
Confidence 46777778999999998 2 34 478889999999999 999998843
No 98
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=95.55 E-value=0.024 Score=42.30 Aligned_cols=48 Identities=15% Similarity=0.050 Sum_probs=33.4
Q ss_pred cccccCCCC-CCccceEEEe--c-ccc--ChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 4 TELEQIVAT-QSSEDLVTIA--L-YWF--DLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 4 ~~~e~l~~~-d~s~Dlv~~a--~-hw~--D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
+|+.+++.. ...||+|.-. + |.. ++++.++.+.++|| |||++.+.++.
T Consensus 101 ~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLk-pgG~~ll~~~~ 154 (213)
T TIGR03840 101 GDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLP-PGARQLLITLD 154 (213)
T ss_pred ccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcC-CCCeEEEEEEE
Confidence 444444432 3579999966 4 433 46678999999999 99987776553
No 99
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=95.51 E-value=0.018 Score=44.60 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=36.5
Q ss_pred CcccccccCCCCC---CccceEEEe-c-cc-cChhhHHHHHHHHhhCCCceEEE
Q 038491 1 MFITELEQIVATQ---SSEDLVTIA-L-YW-FDLPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 1 ~~~~~~e~l~~~d---~s~Dlv~~a-~-hw-~D~~~~l~e~~RvLk~pgG~la~ 48 (146)
|..||+.++-.++ +++|.|+.+ | -- .|+-.-+..|+++|| |||...-
T Consensus 148 m~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLk-pgG~WIN 200 (270)
T PF07942_consen 148 MCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLK-PGGYWIN 200 (270)
T ss_pred EecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhc-cCCEEEe
Confidence 5678888887666 899999988 2 11 167779999999999 9995543
No 100
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=95.49 E-value=0.039 Score=39.87 Aligned_cols=34 Identities=15% Similarity=0.036 Sum_probs=28.4
Q ss_pred CccceEEEe--ccccChhhHHHHHHHHhhCCCceEEEEe
Q 038491 14 SSEDLVTIA--LYWFDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 14 ~s~Dlv~~a--~hw~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
++||+|+++ .+ .....+.++.++|| |||.+++..
T Consensus 96 ~~~D~v~~~~~~~--~~~~~l~~~~~~Lk-~gG~lv~~~ 131 (187)
T PRK08287 96 GKADAIFIGGSGG--NLTAIIDWSLAHLH-PGGRLVLTF 131 (187)
T ss_pred cCCCEEEECCCcc--CHHHHHHHHHHhcC-CCeEEEEEE
Confidence 579999988 34 46789999999999 999997743
No 101
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=95.42 E-value=0.026 Score=42.29 Aligned_cols=45 Identities=13% Similarity=0.025 Sum_probs=31.9
Q ss_pred cccccCCCCCCccceEEEe--cccc---------------------------ChhhHHHHHHHHhhCCCceEEEEe
Q 038491 4 TELEQIVATQSSEDLVTIA--LYWF---------------------------DLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a--~hw~---------------------------D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
+++.+ ++++++||+|++. ++.. +...+++++.++|| |||.+++..
T Consensus 144 ~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~-~gG~~~~~~ 217 (251)
T TIGR03534 144 SDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLK-PGGWLLLEI 217 (251)
T ss_pred Cchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcc-cCCEEEEEE
Confidence 34443 4667899999996 3211 12367899999999 999998753
No 102
>PRK14968 putative methyltransferase; Provisional
Probab=95.18 E-value=0.059 Score=38.41 Aligned_cols=40 Identities=18% Similarity=0.143 Sum_probs=29.6
Q ss_pred CCCCccceEEEe--ccc----------------------cChhhHHHHHHHHhhCCCceEEEEec
Q 038491 11 ATQSSEDLVTIA--LYW----------------------FDLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 11 ~~d~s~Dlv~~a--~hw----------------------~D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
+++++||+|++. ++. .....+++++.++|| |||.+.+...
T Consensus 86 ~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk-~gG~~~~~~~ 149 (188)
T PRK14968 86 FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLK-PGGRILLLQS 149 (188)
T ss_pred ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcC-CCeEEEEEEc
Confidence 455689999987 321 014568999999999 9999877653
No 103
>PRK04457 spermidine synthase; Provisional
Probab=95.13 E-value=0.062 Score=41.28 Aligned_cols=39 Identities=10% Similarity=0.209 Sum_probs=30.5
Q ss_pred CCccceEEEe-cccc------ChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 13 QSSEDLVTIA-LYWF------DLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 13 d~s~Dlv~~a-~hw~------D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
.++||+|++- ++-. ....++++++++|+ |||++++..++
T Consensus 134 ~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~-pgGvlvin~~~ 179 (262)
T PRK04457 134 RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALS-SDGIFVVNLWS 179 (262)
T ss_pred CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcC-CCcEEEEEcCC
Confidence 3689999987 4422 24799999999999 99999985443
No 104
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=95.08 E-value=0.071 Score=43.70 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=21.1
Q ss_pred hhHHHHHHHHhhCCCceEEEEecCC
Q 038491 29 PQFYKQVKWILKEPTRVIIAWTYTM 53 (146)
Q Consensus 29 ~~~l~e~~RvLk~pgG~la~~~~~~ 53 (146)
.+.+.++.|+|| |||+|++.+.+.
T Consensus 348 ~~lL~~a~~~Lk-pgG~lvystcs~ 371 (426)
T TIGR00563 348 SEILDAIWPLLK-TGGTLVYATCSV 371 (426)
T ss_pred HHHHHHHHHhcC-CCcEEEEEeCCC
Confidence 579999999999 999999987654
No 105
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.90 E-value=0.037 Score=41.06 Aligned_cols=41 Identities=12% Similarity=0.007 Sum_probs=29.7
Q ss_pred ccccccCCCCCCccceEEEe--ccccChhhHHHHHHHHhhCCCceEEEE
Q 038491 3 ITELEQIVATQSSEDLVTIA--LYWFDLPQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a--~hw~D~~~~l~e~~RvLk~pgG~la~~ 49 (146)
.+|+.....+++.||+|++. .+ +. .+.+.+.|| |||++++.
T Consensus 133 ~gd~~~~~~~~~~fD~I~~~~~~~--~~---~~~l~~~Lk-pgG~lvi~ 175 (212)
T PRK13942 133 VGDGTLGYEENAPYDRIYVTAAGP--DI---PKPLIEQLK-DGGIMVIP 175 (212)
T ss_pred ECCcccCCCcCCCcCEEEECCCcc--cc---hHHHHHhhC-CCcEEEEE
Confidence 35555555677899999987 43 22 346788999 99998874
No 106
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=94.89 E-value=0.025 Score=42.38 Aligned_cols=44 Identities=30% Similarity=0.334 Sum_probs=32.8
Q ss_pred ccCCCCCCccceEEEe---cccc--ChhhHHHHHHHHhhCCCceEEEEec
Q 038491 7 EQIVATQSSEDLVTIA---LYWF--DLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 7 e~l~~~d~s~Dlv~~a---~hw~--D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
++...+.+++|+|++. .|.. |+-.||+.++..|+ |||.+++=++
T Consensus 114 Q~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~-~~G~IvvKEN 162 (218)
T PF05891_consen 114 QDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALK-PNGVIVVKEN 162 (218)
T ss_dssp GG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred hhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCc-CCcEEEEEec
Confidence 4444456799999999 6888 58889999999999 9999998544
No 107
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=94.79 E-value=0.061 Score=44.24 Aligned_cols=62 Identities=19% Similarity=0.145 Sum_probs=39.6
Q ss_pred cccccCC-CCCCccceEEEe-----cccc--------------------ChhhHHHHHHHHhhCCCceEEEEecCCCCCC
Q 038491 4 TELEQIV-ATQSSEDLVTIA-----LYWF--------------------DLPQFYKQVKWILKEPTRVIIAWTYTMPEIN 57 (146)
Q Consensus 4 ~~~e~l~-~~d~s~Dlv~~a-----~hw~--------------------D~~~~l~e~~RvLk~pgG~la~~~~~~~~~~ 57 (146)
+|+..++ +.+++||.|++- ...+ ...+.+.++.++|| |||.+++.+++...
T Consensus 295 ~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk-pGG~LvYsTCs~~~-- 371 (431)
T PRK14903 295 ADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLE-KGGILLYSTCTVTK-- 371 (431)
T ss_pred CchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEECCCCh--
Confidence 4455555 456789999862 2221 12456889999999 99999988775321
Q ss_pred HHHHHHHHHhh
Q 038491 58 ESAGVVFKSFD 68 (146)
Q Consensus 58 ~~~~~~~~~~~ 68 (146)
.+-..+++.|.
T Consensus 372 eEne~vv~~fl 382 (431)
T PRK14903 372 EENTEVVKRFV 382 (431)
T ss_pred hhCHHHHHHHH
Confidence 33334555554
No 108
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=94.76 E-value=0.1 Score=42.98 Aligned_cols=48 Identities=17% Similarity=0.342 Sum_probs=34.2
Q ss_pred cccccCCCCCCccceEEEe--------------cccc-C----------hhhHHHHHHHHhhCCCceEEEEecCC
Q 038491 4 TELEQIVATQSSEDLVTIA--------------LYWF-D----------LPQFYKQVKWILKEPTRVIIAWTYTM 53 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a--------------~hw~-D----------~~~~l~e~~RvLk~pgG~la~~~~~~ 53 (146)
+|+.+++ ++++||+|++- .+|. + ..+.+.++.++|| |||++++.+.+.
T Consensus 308 ~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk-pgG~lvystcs~ 380 (445)
T PRK14904 308 GDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLK-PGGVLVYATCSI 380 (445)
T ss_pred Ccccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCCC
Confidence 4555554 56789999951 1233 1 2358999999999 999999987653
No 109
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=94.73 E-value=0.1 Score=40.10 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=29.1
Q ss_pred CCccceEEEe--ccccC-----hhhHHHHHHHHhhCCCceEEEEe
Q 038491 13 QSSEDLVTIA--LYWFD-----LPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 13 d~s~Dlv~~a--~hw~D-----~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
+++||+|++- .++.. ...+++.+++.|+ |||++++..
T Consensus 143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~-pgG~lv~~~ 186 (270)
T TIGR00417 143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALN-EDGIFVAQS 186 (270)
T ss_pred CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhC-CCcEEEEcC
Confidence 4689999987 23321 3578999999999 999998863
No 110
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=94.67 E-value=0.043 Score=40.62 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=29.8
Q ss_pred ccccCCCCCCccceEEEe--c-ccc--ChhhHHHHHHHHhhCCCceEEE
Q 038491 5 ELEQIVATQSSEDLVTIA--L-YWF--DLPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 5 ~~e~l~~~d~s~Dlv~~a--~-hw~--D~~~~l~e~~RvLk~pgG~la~ 48 (146)
++++++ ++||+|++. + |+. ++..++++++|+++ +|+.+.+
T Consensus 112 d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~-~~~~i~~ 156 (219)
T TIGR02021 112 DLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTK-ERVIFTF 156 (219)
T ss_pred ChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 444444 789999988 4 553 36788999999999 8877665
No 111
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=94.59 E-value=0.023 Score=41.87 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=26.7
Q ss_pred CCCCCccceEEEe--ccccC---hhhHHHHHHHHhhCCCceEEE
Q 038491 10 VATQSSEDLVTIA--LYWFD---LPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 10 ~~~d~s~Dlv~~a--~hw~D---~~~~l~e~~RvLk~pgG~la~ 48 (146)
+.+.+.||+|+|- +-+|| ..+.++.+++.|+ |||.|.+
T Consensus 131 ~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~-pgG~L~l 173 (196)
T PF01739_consen 131 DPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLK-PGGYLFL 173 (196)
T ss_dssp ------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred CcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcC-CCCEEEE
Confidence 4456789999999 66776 5679999999999 9999977
No 112
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=94.56 E-value=0.057 Score=40.38 Aligned_cols=45 Identities=13% Similarity=0.026 Sum_probs=32.0
Q ss_pred cccccCCCC-CCccceEEEe--cccc---ChhhHHHHHHHHhhCCCceEEEE
Q 038491 4 TELEQIVAT-QSSEDLVTIA--LYWF---DLPQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 4 ~~~e~l~~~-d~s~Dlv~~a--~hw~---D~~~~l~e~~RvLk~pgG~la~~ 49 (146)
+|+.+++.. ...||+|.-. +|-+ .+.+.++.+.++|| |||++.+.
T Consensus 104 ~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~-pgG~~~l~ 154 (218)
T PRK13255 104 GDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLP-AGCRGLLV 154 (218)
T ss_pred CcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcC-CCCeEEEE
Confidence 445555433 2589999966 4444 46789999999999 99975553
No 113
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=94.40 E-value=0.061 Score=39.61 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=33.5
Q ss_pred cccccCCCCCCccceEEEe--ccccChh---hHHHHHHHHhhCCCceEEEEec
Q 038491 4 TELEQIVATQSSEDLVTIA--LYWFDLP---QFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a--~hw~D~~---~~l~e~~RvLk~pgG~la~~~~ 51 (146)
.|+++..++ +.+|+|++. +|..+++ +.++.+..-++ |||.+.+...
T Consensus 84 ~Dl~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~-pGG~~li~~~ 134 (192)
T PF03848_consen 84 ADLNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATK-PGGYNLIVTF 134 (192)
T ss_dssp -BGCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEE-EEEEEEEEEE
T ss_pred ecchhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcC-CcEEEEEEEe
Confidence 466677775 679999987 7777655 46888888999 9999877543
No 114
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=94.35 E-value=0.067 Score=41.68 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=35.6
Q ss_pred cCCCCCCccceEEEe--cccc---ChhhHHHHHHHHhhCCCceEEEEecCCC
Q 038491 8 QIVATQSSEDLVTIA--LYWF---DLPQFYKQVKWILKEPTRVIIAWTYTMP 54 (146)
Q Consensus 8 ~l~~~d~s~Dlv~~a--~hw~---D~~~~l~e~~RvLk~pgG~la~~~~~~~ 54 (146)
+.+.-++.||-|+|. ++-+ ..+.+++.++++|+ |||.+.+...+.+
T Consensus 130 d~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~-~~G~~llh~I~~~ 180 (283)
T COG2230 130 DYRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLK-PGGRMLLHSITGP 180 (283)
T ss_pred cccccccccceeeehhhHHHhCcccHHHHHHHHHhhcC-CCceEEEEEecCC
Confidence 344444559999999 5444 48999999999999 9999988776544
No 115
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=94.15 E-value=0.053 Score=43.18 Aligned_cols=37 Identities=32% Similarity=0.371 Sum_probs=29.7
Q ss_pred CCccceEEEe--cccc--C---hhhHHHHHHHHhhCCCceEEEEe
Q 038491 13 QSSEDLVTIA--LYWF--D---LPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 13 d~s~Dlv~~a--~hw~--D---~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
...||+|+|- +|+. + ...++..|.+.|| |||.|....
T Consensus 143 ~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk-~GG~FIgT~ 186 (331)
T PF03291_consen 143 SRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLK-PGGYFIGTT 186 (331)
T ss_dssp TS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred CCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCEEEEEe
Confidence 4699999999 8876 3 3448999999999 999998754
No 116
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=93.96 E-value=0.1 Score=39.09 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=34.5
Q ss_pred ccccccCCCC---CCccceEEEe--cccc-C---hhhHHHHHHHHhhCCCce
Q 038491 3 ITELEQIVAT---QSSEDLVTIA--LYWF-D---LPQFYKQVKWILKEPTRV 45 (146)
Q Consensus 3 ~~~~e~l~~~---d~s~Dlv~~a--~hw~-D---~~~~l~e~~RvLk~pgG~ 45 (146)
+.|+.+.|+| +++||+|++. ++++ | +..-+..+++.|| |+|.
T Consensus 89 qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~-~~g~ 139 (219)
T PF11968_consen 89 QQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLK-PPGL 139 (219)
T ss_pred eeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhC-CCCc
Confidence 4677788874 7899999999 7777 3 5568899999999 9998
No 117
>PLN02366 spermidine synthase
Probab=93.89 E-value=0.19 Score=39.61 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=28.3
Q ss_pred CCCccceEEEe--ccccC-----hhhHHHHHHHHhhCCCceEEEE
Q 038491 12 TQSSEDLVTIA--LYWFD-----LPQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 12 ~d~s~Dlv~~a--~hw~D-----~~~~l~e~~RvLk~pgG~la~~ 49 (146)
++++||+|++- -++.. -..+++.+++.|+ |||+++..
T Consensus 162 ~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~-pgGvlv~q 205 (308)
T PLN02366 162 PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALR-PGGVVCTQ 205 (308)
T ss_pred cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEEC
Confidence 35789999986 23322 2468999999999 99999774
No 118
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=93.87 E-value=0.064 Score=39.80 Aligned_cols=29 Identities=17% Similarity=-0.004 Sum_probs=23.9
Q ss_pred ccccChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 23 LYWFDLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 23 ~hw~D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
+|=-...++..++++.|| |||++++..+.
T Consensus 140 i~~~~A~~vna~vf~~LK-PGGv~~V~dH~ 168 (238)
T COG4798 140 IHPATAAKVNAAVFKALK-PGGVYLVEDHR 168 (238)
T ss_pred cCcchHHHHHHHHHHhcC-CCcEEEEEecc
Confidence 452246789999999999 99999998764
No 119
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.86 E-value=1.3 Score=36.19 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=16.4
Q ss_pred CCCCCccceEEEe--ccccC
Q 038491 10 VATQSSEDLVTIA--LYWFD 27 (146)
Q Consensus 10 ~~~d~s~Dlv~~a--~hw~D 27 (146)
-||++|+++++++ +||..
T Consensus 157 LfP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 157 LFPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred ccCCCceEEEEeeccceecc
Confidence 4899999999999 99985
No 120
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=93.86 E-value=0.1 Score=39.91 Aligned_cols=38 Identities=24% Similarity=0.538 Sum_probs=31.9
Q ss_pred CCCCCccceEEEe-------ccccC--hhhHHHHHHHHhhCCCceEEE
Q 038491 10 VATQSSEDLVTIA-------LYWFD--LPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 10 ~~~d~s~Dlv~~a-------~hw~D--~~~~l~e~~RvLk~pgG~la~ 48 (146)
.+....||+|.|- ++|=| +-++++.++|.|. |||.|++
T Consensus 161 ~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~-pgGiLvv 207 (288)
T KOG2899|consen 161 DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLH-PGGILVV 207 (288)
T ss_pred hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhC-cCcEEEE
Confidence 3566789999988 34665 6789999999999 9999988
No 121
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=93.78 E-value=0.19 Score=38.58 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=33.6
Q ss_pred cccccCCCCCCccceEEEe--------c--------ccc---------ChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 4 TELEQIVATQSSEDLVTIA--------L--------YWF---------DLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a--------~--------hw~---------D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
+|+..++...++||.|++- + .|. ...+.+.++.++|| |||+|++.+.+
T Consensus 129 ~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk-pgG~lvYstcs 201 (264)
T TIGR00446 129 FDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALK-PGGVLVYSTCS 201 (264)
T ss_pred CCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCC
Confidence 4555556556679999862 1 122 12358999999999 99999887664
No 122
>PRK01581 speE spermidine synthase; Validated
Probab=93.76 E-value=0.14 Score=41.39 Aligned_cols=41 Identities=10% Similarity=0.123 Sum_probs=30.2
Q ss_pred CCCCCccceEEEe-cc-c------cChhhHHHHHHHHhhCCCceEEEEec
Q 038491 10 VATQSSEDLVTIA-LY-W------FDLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 10 ~~~d~s~Dlv~~a-~h-w------~D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
+-.+++||+|++- .. . .--..|++.+++.|+ |||++++...
T Consensus 221 ~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~Lk-PgGV~V~Qs~ 269 (374)
T PRK01581 221 SSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLT-EDGAFVCQSN 269 (374)
T ss_pred HhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcC-CCcEEEEecC
Confidence 3446789999988 22 1 112569999999999 9999988643
No 123
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=93.74 E-value=0.2 Score=41.11 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=33.5
Q ss_pred cccccCC--CCCCccceEEEe--------------cccc-C----------hhhHHHHHHHHhhCCCceEEEEecC
Q 038491 4 TELEQIV--ATQSSEDLVTIA--------------LYWF-D----------LPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 4 ~~~e~l~--~~d~s~Dlv~~a--------------~hw~-D----------~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
+|+.+++ +++++||.|++- .+|. . ..+.+.++.++|| |||.+++.+++
T Consensus 300 ~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lk-pGG~lvystcs 374 (427)
T PRK10901 300 GDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLK-PGGTLLYATCS 374 (427)
T ss_pred cCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCC
Confidence 4555443 356789999843 1242 1 2368999999999 99999987764
No 124
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=93.74 E-value=0.11 Score=40.66 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=21.9
Q ss_pred ccccC---hhhHHHHHHHHhhCCCceEEEEe
Q 038491 23 LYWFD---LPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 23 ~hw~D---~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
+|+++ ...++++++++|+ |||.|.+-.
T Consensus 148 ~~~~~~~e~~~~L~~i~~~L~-pgG~~lig~ 177 (301)
T TIGR03438 148 IGNFTPEEAVAFLRRIRQLLG-PGGGLLIGV 177 (301)
T ss_pred ccCCCHHHHHHHHHHHHHhcC-CCCEEEEec
Confidence 67775 4558999999999 999998743
No 125
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=93.69 E-value=0.11 Score=38.33 Aligned_cols=34 Identities=12% Similarity=-0.029 Sum_probs=25.9
Q ss_pred CCCccceEEEe--ccccChhhHHHHHHHHhhCCCceEEEEec
Q 038491 12 TQSSEDLVTIA--LYWFDLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 12 ~d~s~Dlv~~a--~hw~D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
+.++||+|++. .+.+ .+++.+.|+ |||.+++...
T Consensus 141 ~~~~fD~I~~~~~~~~~-----~~~l~~~L~-~gG~lv~~~~ 176 (212)
T PRK00312 141 AYAPFDRILVTAAAPEI-----PRALLEQLK-EGGILVAPVG 176 (212)
T ss_pred cCCCcCEEEEccCchhh-----hHHHHHhcC-CCcEEEEEEc
Confidence 34789999988 5543 356789999 9999987543
No 126
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=93.69 E-value=0.071 Score=40.19 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=35.2
Q ss_pred CCCCCccceEEEe-c--cccChhhHHHHHHHHhhCCCceEEEEe
Q 038491 10 VATQSSEDLVTIA-L--YWFDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 10 ~~~d~s~Dlv~~a-~--hw~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
.++|++||-|.-- + |.-|.-.+.+.+-|+|| |+|++..+.
T Consensus 164 ~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLk-P~gv~SyfN 206 (271)
T KOG1709|consen 164 TLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLK-PEGVFSYFN 206 (271)
T ss_pred cccccCcceeEeechhhHHHHHHHHHHHHhhhcC-CCceEEEec
Confidence 3889999999987 4 78899999999999999 999997754
No 127
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=93.67 E-value=0.2 Score=37.95 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=36.5
Q ss_pred ccCCCCCCccceEEEe--cccc-C-----------hhhHHHHHHHHhhCCCceEEEEecC
Q 038491 7 EQIVATQSSEDLVTIA--LYWF-D-----------LPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 7 e~l~~~d~s~Dlv~~a--~hw~-D-----------~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
+-+||+.++||.|++- .+|. + +-.|+...+.+|+ +|+..++-.|.
T Consensus 104 ~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~-rg~raV~QfYp 162 (270)
T KOG1541|consen 104 EGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLK-RGARAVLQFYP 162 (270)
T ss_pred CCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhc-cCceeEEEecc
Confidence 6799999999999876 6776 2 2347899999999 99998887764
No 128
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=93.63 E-value=0.1 Score=39.14 Aligned_cols=47 Identities=17% Similarity=0.267 Sum_probs=35.0
Q ss_pred cccccCCCCCCccceEEEe--cc-ccC--hhhHHHHHHHHhhCCC--ceEEEEecCCC
Q 038491 4 TELEQIVATQSSEDLVTIA--LY-WFD--LPQFYKQVKWILKEPT--RVIIAWTYTMP 54 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a--~h-w~D--~~~~l~e~~RvLk~pg--G~la~~~~~~~ 54 (146)
+|+- -++|. +|+|+.. +| |.| ..+.|+.+++.|+ || |+|.+.....+
T Consensus 150 gd~f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~-pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 150 GDFF-DPLPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALK-PGKDGRLLIIEMVLP 203 (241)
T ss_dssp S-TT-TCCSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSE-ECTTEEEEEEEEEEC
T ss_pred ccHH-hhhcc--ccceeeehhhhhcchHHHHHHHHHHHHHhC-CCCCCeEEEEeeccC
Confidence 4444 45665 9999999 65 764 5567999999999 99 99999887544
No 129
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=93.50 E-value=0.07 Score=39.26 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=30.9
Q ss_pred ccccc-C-CCCCCccceEEEe---ccccChhhHHHHHHHHhh
Q 038491 4 TELEQ-I-VATQSSEDLVTIA---LYWFDLPQFYKQVKWILK 40 (146)
Q Consensus 4 ~~~e~-l-~~~d~s~Dlv~~a---~hw~D~~~~l~e~~RvLk 40 (146)
+|+++ + .|+|+|||.|+.+ -|..++...+.|+.||-|
T Consensus 62 ~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 62 GDLDEGLADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred CCHHHhHhhCCCCCccEEehHhHHHhHhHHHHHHHHHHHhcC
Confidence 45553 4 4999999999998 577799999999999987
No 130
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.49 E-value=0.064 Score=40.80 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=35.1
Q ss_pred CCCCccceEEEe--cccc-ChhhHHHHHHHHhhCCCceEEEEec
Q 038491 11 ATQSSEDLVTIA--LYWF-DLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 11 ~~d~s~Dlv~~a--~hw~-D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
..+..||+|+++ +-+. +++..+.-+.+.|+ |||.|++..-
T Consensus 184 ~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~-~gGlfaFSvE 226 (287)
T COG4976 184 LTQERFDLIVAADVLPYLGALEGLFAGAAGLLA-PGGLFAFSVE 226 (287)
T ss_pred ccCCcccchhhhhHHHhhcchhhHHHHHHHhcC-CCceEEEEec
Confidence 567889999999 6566 99999999999999 9999999653
No 131
>PRK00536 speE spermidine synthase; Provisional
Probab=93.42 E-value=0.12 Score=39.96 Aligned_cols=33 Identities=21% Similarity=0.099 Sum_probs=28.2
Q ss_pred CCccceEEEe-ccccChhhHHHHHHHHhhCCCceEEEE
Q 038491 13 QSSEDLVTIA-LYWFDLPQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 13 d~s~Dlv~~a-~hw~D~~~~l~e~~RvLk~pgG~la~~ 49 (146)
.++||+|++- . +.+.+++.++|.|+ |||.++.-
T Consensus 137 ~~~fDVIIvDs~---~~~~fy~~~~~~L~-~~Gi~v~Q 170 (262)
T PRK00536 137 IKKYDLIICLQE---PDIHKIDGLKRMLK-EDGVFISV 170 (262)
T ss_pred CCcCCEEEEcCC---CChHHHHHHHHhcC-CCcEEEEC
Confidence 4689999987 5 45789999999999 99999873
No 132
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=93.41 E-value=0.12 Score=38.15 Aligned_cols=41 Identities=10% Similarity=-0.072 Sum_probs=28.4
Q ss_pred cccccCCCCCCccceEEEe--ccccChhhHHHHHHHHhhCCCceEEEEe
Q 038491 4 TELEQIVATQSSEDLVTIA--LYWFDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a--~hw~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
+|+.......+.||+|++. .+ ...+.+.+.|| |||++++..
T Consensus 135 ~d~~~~~~~~~~fD~Ii~~~~~~-----~~~~~~~~~L~-~gG~lv~~~ 177 (215)
T TIGR00080 135 GDGTQGWEPLAPYDRIYVTAAGP-----KIPEALIDQLK-EGGILVMPV 177 (215)
T ss_pred CCcccCCcccCCCCEEEEcCCcc-----cccHHHHHhcC-cCcEEEEEE
Confidence 3454444445789999987 33 23356889999 999998743
No 133
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=93.30 E-value=0.12 Score=39.58 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=33.8
Q ss_pred cccccCC--CCCCccceEEEe--c----------------ccc---ChhhHHHHHHHHhhCCCceEEEEe
Q 038491 4 TELEQIV--ATQSSEDLVTIA--L----------------YWF---DLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 4 ~~~e~l~--~~d~s~Dlv~~a--~----------------hw~---D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
+|+.++. ..-.+||+|+|. + |+. +.+..++-+.++|| |||.++++.
T Consensus 102 ~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk-~~G~l~~V~ 170 (248)
T COG4123 102 ADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLK-PGGRLAFVH 170 (248)
T ss_pred hhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHcc-CCCEEEEEe
Confidence 4455442 445589999998 2 222 57789999999999 999999864
No 134
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=93.15 E-value=0.15 Score=39.20 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=29.9
Q ss_pred CCCccceEEEe--c-cccChhhHHHHHHHHhhCCCceEEE
Q 038491 12 TQSSEDLVTIA--L-YWFDLPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 12 ~d~s~Dlv~~a--~-hw~D~~~~l~e~~RvLk~pgG~la~ 48 (146)
.+..||+|+|- + +=.++-..++++++.|+ |+|.+.+
T Consensus 148 ~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~-p~G~lil 186 (265)
T PF05219_consen 148 TDFKFDVISCLNVLDRCDRPLTLLRDIRRALK-PNGRLIL 186 (265)
T ss_pred cCCceEEEeehhhhhccCCHHHHHHHHHHHhC-CCCEEEE
Confidence 45689999998 2 33478899999999999 9998765
No 135
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=92.38 E-value=0.18 Score=41.94 Aligned_cols=50 Identities=28% Similarity=0.381 Sum_probs=38.9
Q ss_pred CcccccccCCCCCCccceEEEe--cc-cc-C---------hhhHHHHHHHHhhCCCceEEEEec
Q 038491 1 MFITELEQIVATQSSEDLVTIA--LY-WF-D---------LPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 1 ~~~~~~e~l~~~d~s~Dlv~~a--~h-w~-D---------~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
|+..++..+.|+|+|||.|+.- ++ .+ | +...+.|++|||+ |||++..+.+
T Consensus 100 ~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~-~~gk~~svtl 162 (482)
T KOG2352|consen 100 MVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLA-PGGKYISVTL 162 (482)
T ss_pred EEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhc-cCCEEEEEEe
Confidence 4567888999999999999865 32 22 2 4556799999999 9999877666
No 136
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=92.36 E-value=0.54 Score=37.02 Aligned_cols=88 Identities=13% Similarity=0.065 Sum_probs=50.5
Q ss_pred ChhhHHHHHHHHhhCCCceEEEEecCCCCCCHHHHHHHHHhhhhccCCCchhhhhhhhhhhccCCCC-CCCCccCCCccC
Q 038491 27 DLPQFYKQVKWILKEPTRVIIAWTYTMPEINESAGVVFKSFDRVDCEPFWKPQRKLLDNKYMSIDFP-FEPVDRDDNTGP 105 (146)
Q Consensus 27 D~~~~l~e~~RvLk~pgG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~~i~~~~~~~t 105 (146)
.++.++..+-++|+ |||+|++++++.. .+++.+.|+.....+--+++....... +.+ +..+......-|
T Consensus 222 ~L~~~L~~a~~~L~-~gGRl~VIsFHSL-----EDRiVK~ff~~~s~~~~p~~lP~~~~~----~~~~~~~itkK~i~ps 291 (314)
T COG0275 222 ELEEALEAALDLLK-PGGRLAVISFHSL-----EDRIVKNFFKELSKPGVPKGLPVTEEG----PALKFKLITKKPIMPS 291 (314)
T ss_pred HHHHHHHHHHHhhC-CCcEEEEEEecch-----HHHHHHHHHHHhcccCCCCCCCccccc----ccchhhhccCCCcCCC
Confidence 57889999999999 9999999987532 245666666532221111111011010 111 333322333446
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 038491 106 FDDYFMFIRLYSAYQTAKD 124 (146)
Q Consensus 106 ~~~~~~~l~S~S~~~~~~~ 124 (146)
-+++-.-=+|.|+..+..+
T Consensus 292 ~~Ei~~NpRsRSAkLRv~e 310 (314)
T COG0275 292 EEEIEANPRARSAKLRVAE 310 (314)
T ss_pred HHHHHhCcchhhhHHHhhh
Confidence 7788777788777766533
No 137
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=92.36 E-value=0.24 Score=37.71 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=17.2
Q ss_pred hhHHHHHHHHhhCCCceEEEE
Q 038491 29 PQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 29 ~~~l~e~~RvLk~pgG~la~~ 49 (146)
.++++++.++|| |||.+++-
T Consensus 218 ~~~~~~~~~~Lk-~gG~l~~e 237 (275)
T PRK09328 218 RRIIEQAPRYLK-PGGWLLLE 237 (275)
T ss_pred HHHHHHHHHhcc-cCCEEEEE
Confidence 567888999999 99999884
No 138
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=92.27 E-value=0.51 Score=38.89 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=19.1
Q ss_pred hhHHHHHHHHhhCCCceEEEEecC
Q 038491 29 PQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 29 ~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
...+.++.|+|| |||++++.+..
T Consensus 359 ~~iL~~a~~~Lk-pGG~lvystcs 381 (444)
T PRK14902 359 LEILESVAQYLK-KGGILVYSTCT 381 (444)
T ss_pred HHHHHHHHHHcC-CCCEEEEEcCC
Confidence 357999999999 99999876543
No 139
>PRK03612 spermidine synthase; Provisional
Probab=92.02 E-value=0.39 Score=40.55 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=29.1
Q ss_pred CCCccceEEEe--cccc-C-----hhhHHHHHHHHhhCCCceEEEEe
Q 038491 12 TQSSEDLVTIA--LYWF-D-----LPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 12 ~d~s~Dlv~~a--~hw~-D-----~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
.+++||+|++. .++. + -+.+++.++|.|| |||++++..
T Consensus 370 ~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~-pgG~lv~~~ 415 (521)
T PRK03612 370 LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLA-PDGLLVVQS 415 (521)
T ss_pred CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcC-CCeEEEEec
Confidence 35789999998 3332 1 2358999999999 999998854
No 140
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=91.89 E-value=0.36 Score=36.47 Aligned_cols=40 Identities=28% Similarity=0.174 Sum_probs=32.1
Q ss_pred CCCCccceEEEe--------cccc---ChhhHHHHHHHHhhCCCceEEEEec
Q 038491 11 ATQSSEDLVTIA--------LYWF---DLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 11 ~~d~s~Dlv~~a--------~hw~---D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
++++|+|-|... -|+- =.+.++++++|+|| |||.|.+.+.
T Consensus 115 ~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk-~gG~l~~aTD 165 (227)
T COG0220 115 IPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLK-PGGVLHFATD 165 (227)
T ss_pred CCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHcc-CCCEEEEEec
Confidence 566799999998 2433 25679999999999 9999988764
No 141
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=91.85 E-value=0.33 Score=37.57 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=30.1
Q ss_pred CCCccceEEEe--ccccC---hhhHHHHHHHHhhCCCceEEE
Q 038491 12 TQSSEDLVTIA--LYWFD---LPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 12 ~d~s~Dlv~~a--~hw~D---~~~~l~e~~RvLk~pgG~la~ 48 (146)
..+.||+|.|- +=+|| ..+.+..++..|+ |||.|.+
T Consensus 199 ~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~-~gG~Lfl 239 (268)
T COG1352 199 FLGKFDLIFCRNVLIYFDEETQERILRRFADSLK-PGGLLFL 239 (268)
T ss_pred ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhC-CCCEEEE
Confidence 34569999999 56665 6679999999999 9999977
No 142
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=91.52 E-value=0.25 Score=38.82 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=29.6
Q ss_pred CccceEEEe--ccccChhhHHHHHHHHhhCCCceEEEEec
Q 038491 14 SSEDLVTIA--LYWFDLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 14 ~s~Dlv~~a--~hw~D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
..||+|+|. .+ -+.....++++.|| |||.+++.+.
T Consensus 228 ~~~DvIVANILA~--vl~~La~~~~~~lk-pgg~lIlSGI 264 (300)
T COG2264 228 GPFDVIVANILAE--VLVELAPDIKRLLK-PGGRLILSGI 264 (300)
T ss_pred CcccEEEehhhHH--HHHHHHHHHHHHcC-CCceEEEEee
Confidence 599999999 44 24489999999999 9999999874
No 143
>PRK07402 precorrin-6B methylase; Provisional
Probab=91.42 E-value=0.43 Score=34.65 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=26.4
Q ss_pred ccceEEEe-ccccChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 15 SEDLVTIA-LYWFDLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 15 s~Dlv~~a-~hw~D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
.+|.|+.. . -+.+.+++++.|+|| |||.+++..+.
T Consensus 109 ~~d~v~~~~~--~~~~~~l~~~~~~Lk-pgG~li~~~~~ 144 (196)
T PRK07402 109 APDRVCIEGG--RPIKEILQAVWQYLK-PGGRLVATASS 144 (196)
T ss_pred CCCEEEEECC--cCHHHHHHHHHHhcC-CCeEEEEEeec
Confidence 35666554 2 256899999999999 99999887653
No 144
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=91.11 E-value=0.37 Score=37.91 Aligned_cols=20 Identities=10% Similarity=0.073 Sum_probs=17.2
Q ss_pred hhHHHHHHHHhhCCCceEEEE
Q 038491 29 PQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 29 ~~~l~e~~RvLk~pgG~la~~ 49 (146)
...++++.++|| |||.+++-
T Consensus 243 ~~i~~~a~~~L~-pgG~l~~E 262 (307)
T PRK11805 243 RRILAEAPDYLT-EDGVLVVE 262 (307)
T ss_pred HHHHHHHHHhcC-CCCEEEEE
Confidence 467899999999 99999873
No 145
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=91.07 E-value=0.56 Score=36.88 Aligned_cols=45 Identities=11% Similarity=-0.059 Sum_probs=34.3
Q ss_pred CCCCCccceEEEe--cccc-C-----hhhHHHHHHHHhhCCCceEEEEecCCCCC
Q 038491 10 VATQSSEDLVTIA--LYWF-D-----LPQFYKQVKWILKEPTRVIIAWTYTMPEI 56 (146)
Q Consensus 10 ~~~d~s~Dlv~~a--~hw~-D-----~~~~l~e~~RvLk~pgG~la~~~~~~~~~ 56 (146)
+.++ +||+|+|. ||== + -++.+.++.+.|+ +||.|.++.++.+..
T Consensus 220 ~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~-~gGeL~iVan~~l~y 272 (300)
T COG2813 220 PVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLK-PGGELWIVANRHLPY 272 (300)
T ss_pred cccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhc-cCCEEEEEEcCCCCh
Confidence 4455 89999999 8721 1 2368899999999 999999988865443
No 146
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=90.73 E-value=0.37 Score=36.36 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=26.5
Q ss_pred CCccceEEEe-ccccChhhHHHHHHHHhhCCCceEEE
Q 038491 13 QSSEDLVTIA-LYWFDLPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 13 d~s~Dlv~~a-~hw~D~~~~l~e~~RvLk~pgG~la~ 48 (146)
+++||+|++- -. ......+.++.+.|| |||.+++
T Consensus 142 ~~~fD~VfiDa~k-~~y~~~~~~~~~ll~-~GG~ii~ 176 (234)
T PLN02781 142 KPEFDFAFVDADK-PNYVHFHEQLLKLVK-VGGIIAF 176 (234)
T ss_pred CCCCCEEEECCCH-HHHHHHHHHHHHhcC-CCeEEEE
Confidence 4689999877 21 134567899999999 9999876
No 147
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=90.68 E-value=0.52 Score=37.17 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=28.9
Q ss_pred ChhhHHHHHHHHhhCCCceEEEEecCCCCCCHHHHHHHHHhhh
Q 038491 27 DLPQFYKQVKWILKEPTRVIIAWTYTMPEINESAGVVFKSFDR 69 (146)
Q Consensus 27 D~~~~l~e~~RvLk~pgG~la~~~~~~~~~~~~~~~~~~~~~~ 69 (146)
.+++++..+..+|+ |||++++++|+. -.+++.++++.
T Consensus 218 ~L~~~L~~~~~~L~-~gGrl~VISfHS-----LEDRiVK~~f~ 254 (305)
T TIGR00006 218 ELEEALQFAPNLLA-PGGRLSIISFHS-----LEDRIVKNFFR 254 (305)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEEecCc-----HHHHHHHHHHH
Confidence 47789999999999 999999998853 33456666554
No 148
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=90.63 E-value=0.18 Score=38.74 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=27.4
Q ss_pred ccceEEEe--cc--ccC---hhhHHHHHHHHhhCCCceEEEEec
Q 038491 15 SEDLVTIA--LY--WFD---LPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 15 s~Dlv~~a--~h--w~D---~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
.+|+|++. +- =.| ..++++.+.+.|| |||.|++.+.
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLk-pGG~Lil~~~ 200 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLK-PGGHLILAGV 200 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEE-EEEEEEEEEE
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcC-CCcEEEEEEE
Confidence 59999988 21 114 5568899999999 9999988653
No 149
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=90.62 E-value=0.48 Score=37.88 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=32.5
Q ss_pred cceEEEe---cccc--ChhhHHHHHHHHhhCCCceEEEEecCCC
Q 038491 16 EDLVTIA---LYWF--DLPQFYKQVKWILKEPTRVIIAWTYTMP 54 (146)
Q Consensus 16 ~Dlv~~a---~hw~--D~~~~l~e~~RvLk~pgG~la~~~~~~~ 54 (146)
-|+|++. -||. |.-++|+.++.-|+ |||.+++.....+
T Consensus 237 ~daI~mkWiLhdwtDedcvkiLknC~~sL~-~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 237 GDAIWMKWILHDWTDEDCVKILKNCKKSLP-PGGKIIVVENVTP 279 (342)
T ss_pred cCeEEEEeecccCChHHHHHHHHHHHHhCC-CCCEEEEEeccCC
Confidence 4599999 5899 47789999999999 9999999887544
No 150
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=90.58 E-value=1.1 Score=34.46 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=31.6
Q ss_pred ccccCCCCCCccceEEEeccccChhhHHHHHHHHhhCCCceEEEEe
Q 038491 5 ELEQIVATQSSEDLVTIALYWFDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 5 ~~e~l~~~d~s~Dlv~~a~hw~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
|+-+.-+++ .||+|+.= ..|+-.++..++.+|| |||.+++..
T Consensus 154 Dv~~~~~~~-~vDav~LD--mp~PW~~le~~~~~Lk-pgg~~~~y~ 195 (256)
T COG2519 154 DVREGIDEE-DVDAVFLD--LPDPWNVLEHVSDALK-PGGVVVVYS 195 (256)
T ss_pred ccccccccc-ccCEEEEc--CCChHHHHHHHHHHhC-CCcEEEEEc
Confidence 333444444 78888765 3478899999999999 999998864
No 151
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=90.27 E-value=0.51 Score=36.66 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=17.1
Q ss_pred hhHHHHHHHHhhCCCceEEEE
Q 038491 29 PQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 29 ~~~l~e~~RvLk~pgG~la~~ 49 (146)
..+++++.++|| |||++++-
T Consensus 231 ~~il~~a~~~L~-~gG~l~~e 250 (284)
T TIGR03533 231 RRILAEAADHLN-ENGVLVVE 250 (284)
T ss_pred HHHHHHHHHhcC-CCCEEEEE
Confidence 467899999999 99999873
No 152
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=90.03 E-value=0.45 Score=36.79 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHhhCCCceEEE
Q 038491 28 LPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 28 ~~~~l~e~~RvLk~pgG~la~ 48 (146)
..+.++++.++|+ |||.+++
T Consensus 223 ~~~ii~~a~~~L~-~gG~l~~ 242 (284)
T TIGR00536 223 LRQIIELAPDYLK-PNGFLVC 242 (284)
T ss_pred HHHHHHHHHHhcc-CCCEEEE
Confidence 4567899999999 9999877
No 153
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=89.70 E-value=0.63 Score=35.14 Aligned_cols=47 Identities=6% Similarity=-0.083 Sum_probs=33.7
Q ss_pred cccccCCCC---CCccceEEEe--c-ccc--ChhhHHHHHHHHhhCCCceEEEEec
Q 038491 4 TELEQIVAT---QSSEDLVTIA--L-YWF--DLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 4 ~~~e~l~~~---d~s~Dlv~~a--~-hw~--D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
+|+-+++.. -+.||+|.-. + +.. .+.+-.+.++++|+ |||.+.++.+
T Consensus 110 gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~-pgg~llll~~ 164 (226)
T PRK13256 110 ADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCS-NNTQILLLVM 164 (226)
T ss_pred ccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhC-CCcEEEEEEE
Confidence 455566532 2579998844 3 332 57888999999999 9999877664
No 154
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=89.70 E-value=0.57 Score=35.23 Aligned_cols=37 Identities=30% Similarity=0.380 Sum_probs=29.1
Q ss_pred CCCCccceEEEeccccChhhHHHHHHHHhhCCCceEEE
Q 038491 11 ATQSSEDLVTIALYWFDLPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 11 ~~d~s~Dlv~~a~hw~D~~~~l~e~~RvLk~pgG~la~ 48 (146)
+..++||+|..=.-=-+.+.++..+.+.|| |||.+++
T Consensus 128 ~~~~~fDliFIDadK~~yp~~le~~~~lLr-~GGliv~ 164 (219)
T COG4122 128 LLDGSFDLVFIDADKADYPEYLERALPLLR-PGGLIVA 164 (219)
T ss_pred ccCCCccEEEEeCChhhCHHHHHHHHHHhC-CCcEEEE
Confidence 567899999876100146789999999999 9999987
No 155
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=89.21 E-value=0.59 Score=34.32 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=30.6
Q ss_pred CCCCccceEEEe--ccccC---------hhhHHHHHHHHhhCCCceEEEEec
Q 038491 11 ATQSSEDLVTIA--LYWFD---------LPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 11 ~~d~s~Dlv~~a--~hw~D---------~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
++++|+|.|... =-|+. -+.++.+++|+|| |||.|.+.+.
T Consensus 84 ~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~-~gG~l~~~TD 134 (195)
T PF02390_consen 84 FPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLK-PGGELYFATD 134 (195)
T ss_dssp STTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEE-EEEEEEEEES
T ss_pred ccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcC-CCCEEEEEeC
Confidence 567999999988 22332 3569999999999 9999988764
No 156
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=89.00 E-value=0.51 Score=34.79 Aligned_cols=38 Identities=11% Similarity=0.118 Sum_probs=26.6
Q ss_pred CCCCCCccceEEEe--c-ccc--ChhhHHHHHHHHhhCCCceEE
Q 038491 9 IVATQSSEDLVTIA--L-YWF--DLPQFYKQVKWILKEPTRVII 47 (146)
Q Consensus 9 l~~~d~s~Dlv~~a--~-hw~--D~~~~l~e~~RvLk~pgG~la 47 (146)
++..+++||+|++. + ||. +....++++.++++ +++.+.
T Consensus 121 ~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i~ 163 (230)
T PRK07580 121 LESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTR-GSLIFT 163 (230)
T ss_pred chhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcC-CeEEEE
Confidence 45567899999988 5 655 34567888888766 555443
No 157
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=88.97 E-value=0.35 Score=35.31 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=35.0
Q ss_pred cccccCCCCCCccceEEEe-ccccChhhHHHHHHHHhhCCCceEEEEec
Q 038491 4 TELEQIVATQSSEDLVTIA-LYWFDLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a-~hw~D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
+.+|+ +....+||+|||- +- +....+.-+.+.|| |||.+.++-.
T Consensus 105 ~R~E~-~~~~~~fd~v~aRAv~--~l~~l~~~~~~~l~-~~G~~l~~KG 149 (184)
T PF02527_consen 105 GRAEE-PEYRESFDVVTARAVA--PLDKLLELARPLLK-PGGRLLAYKG 149 (184)
T ss_dssp S-HHH-TTTTT-EEEEEEESSS--SHHHHHHHHGGGEE-EEEEEEEEES
T ss_pred eeecc-cccCCCccEEEeehhc--CHHHHHHHHHHhcC-CCCEEEEEcC
Confidence 34555 6677899999999 76 78899999999999 9999888654
No 158
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=88.81 E-value=0.79 Score=37.27 Aligned_cols=43 Identities=14% Similarity=0.317 Sum_probs=36.0
Q ss_pred CCCCccceEEEe--ccccCh---hhHHHHHHHHhhCCCceEEEEecCCC
Q 038491 11 ATQSSEDLVTIA--LYWFDL---PQFYKQVKWILKEPTRVIIAWTYTMP 54 (146)
Q Consensus 11 ~~d~s~Dlv~~a--~hw~D~---~~~l~e~~RvLk~pgG~la~~~~~~~ 54 (146)
.+++++|.++-. +=|+|. ..-++++.|+++ |||+++.+....+
T Consensus 291 ~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~-pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 291 LPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTAR-PGARVLWRSAAVP 338 (380)
T ss_pred CCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhC-CCCEEEEeeCCCC
Confidence 578999999988 889975 457888999999 9999999877644
No 159
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=88.48 E-value=0.97 Score=35.51 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=28.7
Q ss_pred ChhhHHHHHHHHhhCCCceEEEEecCCCCCCHHHHHHHHHhhh
Q 038491 27 DLPQFYKQVKWILKEPTRVIIAWTYTMPEINESAGVVFKSFDR 69 (146)
Q Consensus 27 D~~~~l~e~~RvLk~pgG~la~~~~~~~~~~~~~~~~~~~~~~ 69 (146)
.++.+|..+..+|+ |||++++++|+. -.+++.++++.
T Consensus 214 ~L~~~L~~~~~~L~-~gGrl~visfHS-----lEDriVK~~f~ 250 (296)
T PRK00050 214 ELERALEAALDLLK-PGGRLAVISFHS-----LEDRIVKRFFR 250 (296)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEEecCc-----HHHHHHHHHHH
Confidence 37789999999999 999999998853 23456666543
No 160
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=88.44 E-value=0.8 Score=36.38 Aligned_cols=41 Identities=12% Similarity=-0.062 Sum_probs=28.2
Q ss_pred cccccCCCCCCccceEEEe--ccccChhhHHHHHHHHhhCCCceEEEEe
Q 038491 4 TELEQIVATQSSEDLVTIA--LYWFDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a--~hw~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
+|+.+.+.+.++||+|+++ .+ + ....+.++|| |||.+++..
T Consensus 138 gD~~~~~~~~~~fD~Ii~~~g~~--~---ip~~~~~~Lk-pgG~Lvv~~ 180 (322)
T PRK13943 138 GDGYYGVPEFAPYDVIFVTVGVD--E---VPETWFTQLK-EGGRVIVPI 180 (322)
T ss_pred CChhhcccccCCccEEEECCchH--H---hHHHHHHhcC-CCCEEEEEe
Confidence 4555555555789999987 32 1 2345788999 999987743
No 161
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=88.04 E-value=0.36 Score=35.15 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHhhCCCceEEEEecC
Q 038491 28 LPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 28 ~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
....+.|++|||| |||.+++....
T Consensus 35 ~~~~~~~~~rvLk-~~g~~~i~~~~ 58 (231)
T PF01555_consen 35 MEEWLKECYRVLK-PGGSIFIFIDD 58 (231)
T ss_dssp HHHHHHHHHHHEE-EEEEEEEEE-C
T ss_pred HHHHHHHHHhhcC-CCeeEEEEecc
Confidence 5778999999999 99999886543
No 162
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=88.01 E-value=0.77 Score=36.33 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHhhCCCceEEEEecCCCCCCHHHHHHHHHhhh
Q 038491 28 LPQFYKQVKWILKEPTRVIIAWTYTMPEINESAGVVFKSFDR 69 (146)
Q Consensus 28 ~~~~l~e~~RvLk~pgG~la~~~~~~~~~~~~~~~~~~~~~~ 69 (146)
++.++..+..+|+ |||++++++|+ .-.++++++++.
T Consensus 220 L~~~L~~a~~~L~-~gGrl~VISFH-----SLEDRiVK~~f~ 255 (310)
T PF01795_consen 220 LERGLEAAPDLLK-PGGRLVVISFH-----SLEDRIVKQFFR 255 (310)
T ss_dssp HHHHHHHHHHHEE-EEEEEEEEESS-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCcEEEEEEec-----chhhHHHHHHHH
Confidence 6789999999999 99999999884 344567777765
No 163
>PHA03411 putative methyltransferase; Provisional
Probab=87.46 E-value=0.96 Score=35.25 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=33.9
Q ss_pred cccccCCCCCCccceEEEe--ccccC---------------------hhhHHHHHHHHhhCCCceEEEEecCCC
Q 038491 4 TELEQIVATQSSEDLVTIA--LYWFD---------------------LPQFYKQVKWILKEPTRVIIAWTYTMP 54 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a--~hw~D---------------------~~~~l~e~~RvLk~pgG~la~~~~~~~ 54 (146)
+|+.++. .+.+||+|++. ++..+ +.++++.+.++|+ |+|.+.+.-.+.|
T Consensus 116 ~D~~e~~-~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~-p~G~~~~~yss~~ 187 (279)
T PHA03411 116 SDVFEFE-SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIV-PTGSAGFAYSGRP 187 (279)
T ss_pred Cchhhhc-ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheec-CCceEEEEEeccc
Confidence 4555554 35689999997 54321 3578889999999 9997766543433
No 164
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=86.52 E-value=0.48 Score=37.16 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=30.3
Q ss_pred CCCCccceEEEeccccChhhHHHHHHHHhhCCCceEEEEec
Q 038491 11 ATQSSEDLVTIALYWFDLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 11 ~~d~s~Dlv~~a~hw~D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
.....||+|+|.+.---+......+.++|| |||.|.+.+.
T Consensus 221 ~~~~~~dlvvANI~~~vL~~l~~~~~~~l~-~~G~lIlSGI 260 (295)
T PF06325_consen 221 LVEGKFDLVVANILADVLLELAPDIASLLK-PGGYLILSGI 260 (295)
T ss_dssp TCCS-EEEEEEES-HHHHHHHHHHCHHHEE-EEEEEEEEEE
T ss_pred cccccCCEEEECCCHHHHHHHHHHHHHhhC-CCCEEEEccc
Confidence 445899999999322245678888999999 9999999775
No 165
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=86.22 E-value=1.5 Score=33.33 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=27.6
Q ss_pred ccceEEEe-cc--c----cChhhHHHHHHHHhhCCCceEEEEec
Q 038491 15 SEDLVTIA-LY--W----FDLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 15 s~Dlv~~a-~h--w----~D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
+||+|++- .. - +=-..+++.++|.|+ |||.+++...
T Consensus 150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~-~~Gv~v~~~~ 192 (246)
T PF01564_consen 150 KYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLK-PDGVLVLQAG 192 (246)
T ss_dssp -EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred cccEEEEeCCCCCCCcccccCHHHHHHHHhhcC-CCcEEEEEcc
Confidence 89999987 32 1 113579999999999 9999999763
No 166
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.46 E-value=0.79 Score=35.01 Aligned_cols=44 Identities=27% Similarity=0.222 Sum_probs=33.4
Q ss_pred ccccC--CCCCCccceEEEe-------ccccC-------hhhHHHHHHHHhhCCCceEEEE
Q 038491 5 ELEQI--VATQSSEDLVTIA-------LYWFD-------LPQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 5 ~~e~l--~~~d~s~Dlv~~a-------~hw~D-------~~~~l~e~~RvLk~pgG~la~~ 49 (146)
++|.+ .|..+..|+|+|- +|=+| +-.+|+-..+||| |||+|+.-
T Consensus 103 tae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk-~Gg~FVaK 162 (294)
T KOG1099|consen 103 TAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLK-PGGSFVAK 162 (294)
T ss_pred HHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheec-CCCeeehh
Confidence 34443 3778899999987 78555 3457888999999 99999763
No 167
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=85.34 E-value=1.9 Score=30.88 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=26.5
Q ss_pred CCCccceEEEe--ccc-cChhhHHHHHHHHhhCCCceEEE
Q 038491 12 TQSSEDLVTIA--LYW-FDLPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 12 ~d~s~Dlv~~a--~hw-~D~~~~l~e~~RvLk~pgG~la~ 48 (146)
+..+||+|+++ ++. -..+..++-+.++|+ |+|.+.+
T Consensus 116 ~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~-~~~~vl~ 154 (173)
T PF10294_consen 116 EPHSFDVILASDVLYDEELFEPLVRTLKRLLK-PNGKVLL 154 (173)
T ss_dssp S-SSBSEEEEES--S-GGGHHHHHHHHHHHBT-T-TTEEE
T ss_pred ccccCCEEEEecccchHHHHHHHHHHHHHHhC-CCCEEEE
Confidence 45689999999 443 368889999999999 9998544
No 168
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=84.13 E-value=4.2 Score=31.74 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=27.7
Q ss_pred ccceEEEe--cc-----ccChhhHHHHHHHHhhCCCceEEEEe
Q 038491 15 SEDLVTIA--LY-----WFDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 15 s~Dlv~~a--~h-----w~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
+||+|++- -. =+.-..|++.++|.|+ |+|.++...
T Consensus 149 ~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~-~~Gi~v~q~ 190 (282)
T COG0421 149 KFDVIIVDSTDPVGPAEALFTEEFYEGCRRALK-EDGIFVAQA 190 (282)
T ss_pred cCCEEEEcCCCCCCcccccCCHHHHHHHHHhcC-CCcEEEEec
Confidence 79999987 11 1123789999999999 999998873
No 169
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=83.46 E-value=1.1 Score=32.24 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=25.7
Q ss_pred CCccceEEEe--c-c-----ccC------hhhHHHHHHHHhhCCCceEEEE
Q 038491 13 QSSEDLVTIA--L-Y-----WFD------LPQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 13 d~s~Dlv~~a--~-h-----w~D------~~~~l~e~~RvLk~pgG~la~~ 49 (146)
.++||.+.|- + | +=| -.+++.++.++|| |||.|.+.
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK-~GG~L~l~ 110 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLK-PGGLLFLG 110 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhc-cCCeEEEE
Confidence 3578887765 2 2 222 3468999999999 99998774
No 170
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=83.00 E-value=1.6 Score=30.51 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=32.4
Q ss_pred CccceEEEecccc---C---------hhhHHHHHHHHhhCCCceEEEEecC-CCCCCHHHHHHHHHhhh
Q 038491 14 SSEDLVTIALYWF---D---------LPQFYKQVKWILKEPTRVIIAWTYT-MPEINESAGVVFKSFDR 69 (146)
Q Consensus 14 ~s~Dlv~~a~hw~---D---------~~~~l~e~~RvLk~pgG~la~~~~~-~~~~~~~~~~~~~~~~~ 69 (146)
+++|+|+-.+=|. | --.+++.+.++|+ |||.+.+..|. .+. ..+..+.+.+|..
T Consensus 45 ~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~-~gG~i~iv~Y~GH~g-G~eE~~av~~~~~ 111 (140)
T PF06962_consen 45 GPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLK-PGGIITIVVYPGHPG-GKEESEAVEEFLA 111 (140)
T ss_dssp --EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEE-EEEEEEEEE--STCH-HHHHHHHHHHHHH
T ss_pred CCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhc-cCCEEEEEEeCCCCC-CHHHHHHHHHHHH
Confidence 5788888772111 2 3358999999999 99999998884 332 2333444555544
No 171
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=82.01 E-value=5.7 Score=32.49 Aligned_cols=39 Identities=8% Similarity=0.211 Sum_probs=26.5
Q ss_pred CCccceEEEe--cccc----------ChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 13 QSSEDLVTIA--LYWF----------DLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 13 d~s~Dlv~~a--~hw~----------D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
.++||+|++- .--. +.......+.++|| |||.++++.++
T Consensus 291 ~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk-~gG~lv~~scs 341 (396)
T PRK15128 291 GEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLN-PGGILLTFSCS 341 (396)
T ss_pred CCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEEeCC
Confidence 5689999988 2111 12333445789999 99999887654
No 172
>PLN02823 spermine synthase
Probab=81.87 E-value=2.6 Score=33.66 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=27.6
Q ss_pred CCCccceEEEe-c-cccC-------hhhHHH-HHHHHhhCCCceEEEEe
Q 038491 12 TQSSEDLVTIA-L-YWFD-------LPQFYK-QVKWILKEPTRVIIAWT 50 (146)
Q Consensus 12 ~d~s~Dlv~~a-~-hw~D-------~~~~l~-e~~RvLk~pgG~la~~~ 50 (146)
.+++||+|++- . .+.. -..|++ .+++.|+ |||++++..
T Consensus 173 ~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~-p~Gvlv~q~ 220 (336)
T PLN02823 173 RDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLN-PGGIFVTQA 220 (336)
T ss_pred CCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcC-CCcEEEEec
Confidence 45789999986 2 1211 235887 8999999 999998753
No 173
>PHA03412 putative methyltransferase; Provisional
Probab=81.48 E-value=2.8 Score=31.99 Aligned_cols=40 Identities=8% Similarity=-0.068 Sum_probs=27.0
Q ss_pred cccccCCCCCCccceEEEe--cc---ccC----------hhhHHHHHHHHhhCCCce
Q 038491 4 TELEQIVATQSSEDLVTIA--LY---WFD----------LPQFYKQVKWILKEPTRV 45 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a--~h---w~D----------~~~~l~e~~RvLk~pgG~ 45 (146)
+|+...++ +++||+|++. ++ ..| ..+++..+.|+|+ ||+.
T Consensus 104 ~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~-~G~~ 158 (241)
T PHA03412 104 ADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIAR-QGTF 158 (241)
T ss_pred cchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcC-CCEE
Confidence 45655554 5689999999 32 222 4458889999777 6664
No 174
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=81.03 E-value=2.7 Score=32.02 Aligned_cols=21 Identities=14% Similarity=0.012 Sum_probs=17.4
Q ss_pred hhHHHHHHHHhhCCCceEEEEe
Q 038491 29 PQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 29 ~~~l~e~~RvLk~pgG~la~~~ 50 (146)
.+.+..+.++|| |||.+++..
T Consensus 196 ~~i~~~a~~~L~-~gG~l~l~~ 216 (251)
T TIGR03704 196 RRVAAGAPDWLA-PGGHLLVET 216 (251)
T ss_pred HHHHHHHHHhcC-CCCEEEEEE
Confidence 367788889999 999998754
No 175
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=80.20 E-value=2.5 Score=30.46 Aligned_cols=45 Identities=22% Similarity=0.306 Sum_probs=30.4
Q ss_pred ccccccCCCCCCccceEEEe--c--ccc---C----hhhHHHHHHHHhhCCCceEEEE
Q 038491 3 ITELEQIVATQSSEDLVTIA--L--YWF---D----LPQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a--~--hw~---D----~~~~l~e~~RvLk~pgG~la~~ 49 (146)
..|+.++++.++++|.|++. + --- + ...+++++.|+|+ | +.+++.
T Consensus 94 ~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~-~-~~v~l~ 149 (179)
T PF01170_consen 94 QWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLK-P-RAVFLT 149 (179)
T ss_dssp E--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHST-T-CEEEEE
T ss_pred ecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCC-C-CEEEEE
Confidence 46888999889999999999 2 111 1 2346788999999 7 444443
No 176
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=79.47 E-value=5.4 Score=32.67 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=30.1
Q ss_pred CCccceEEEe---c-----ccc----ChhhHHHHHHHHhhCCCceEEEEecCCC
Q 038491 13 QSSEDLVTIA---L-----YWF----DLPQFYKQVKWILKEPTRVIIAWTYTMP 54 (146)
Q Consensus 13 d~s~Dlv~~a---~-----hw~----D~~~~l~e~~RvLk~pgG~la~~~~~~~ 54 (146)
...||+|+.= | .-+ |....+..+.++|+ |||++.++++...
T Consensus 288 g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~-pgG~l~~~s~~~~ 340 (393)
T COG1092 288 GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLA-PGGTLVTSSCSRH 340 (393)
T ss_pred CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcC-CCCEEEEEecCCc
Confidence 4589999975 1 222 45566778899999 9999999876543
No 177
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=79.46 E-value=3.6 Score=34.71 Aligned_cols=40 Identities=18% Similarity=0.065 Sum_probs=32.5
Q ss_pred CCCCccceEEEe--ccccC---------hhhHHHHHHHHhhCCCceEEEEec
Q 038491 11 ATQSSEDLVTIA--LYWFD---------LPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 11 ~~d~s~Dlv~~a--~hw~D---------~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
++++|+|.|... =-|+- -+.++++++|+|| |||.+.+.+.
T Consensus 413 ~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk-~gG~i~~~TD 463 (506)
T PRK01544 413 LPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLK-DNGNLVFASD 463 (506)
T ss_pred cCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcC-CCCEEEEEcC
Confidence 789999999998 23431 3569999999999 9999988764
No 178
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=79.08 E-value=2.4 Score=32.40 Aligned_cols=34 Identities=26% Similarity=0.181 Sum_probs=27.2
Q ss_pred CccceEEEeccccChhhHHHHHHHHh-hCCCceEEEEe
Q 038491 14 SSEDLVTIALYWFDLPQFYKQVKWIL-KEPTRVIIAWT 50 (146)
Q Consensus 14 ~s~Dlv~~a~hw~D~~~~l~e~~RvL-k~pgG~la~~~ 50 (146)
+.+|.|+-= ..++-.++..+.++| | |||.++++.
T Consensus 112 ~~~DavfLD--lp~Pw~~i~~~~~~L~~-~gG~i~~fs 146 (247)
T PF08704_consen 112 SDFDAVFLD--LPDPWEAIPHAKRALKK-PGGRICCFS 146 (247)
T ss_dssp TSEEEEEEE--SSSGGGGHHHHHHHE-E-EEEEEEEEE
T ss_pred CcccEEEEe--CCCHHHHHHHHHHHHhc-CCceEEEEC
Confidence 568877654 346778999999999 7 999998874
No 179
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.00 E-value=2.7 Score=30.47 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=28.9
Q ss_pred CCCCccceEEEe-ccccC--hhhHHHHHHHHhhCCCceEEE
Q 038491 11 ATQSSEDLVTIA-LYWFD--LPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 11 ~~d~s~Dlv~~a-~hw~D--~~~~l~e~~RvLk~pgG~la~ 48 (146)
...+.||.|.|| .-+|| .+....-+++.|| |.|.-.+
T Consensus 99 ~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~-p~g~Al~ 138 (201)
T KOG3201|consen 99 QEQHTFDIILAADCLFFDEHHESLVDTIKSLLR-PSGRALL 138 (201)
T ss_pred HhhCcccEEEeccchhHHHHHHHHHHHHHHHhC-cccceeE
Confidence 345689999999 55554 6778889999999 9999433
No 180
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=78.98 E-value=3.3 Score=32.76 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=20.8
Q ss_pred CCccceEEEe---ccccCh--hhHHHHHHHHhhCCCceEE
Q 038491 13 QSSEDLVTIA---LYWFDL--PQFYKQVKWILKEPTRVII 47 (146)
Q Consensus 13 d~s~Dlv~~a---~hw~D~--~~~l~e~~RvLk~pgG~la 47 (146)
+++||+|+|. .|+.+. ...++.+.+ +. +||.+.
T Consensus 210 ~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~-~g~liI 247 (315)
T PLN02585 210 SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LA-EKRLII 247 (315)
T ss_pred CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hc-CCEEEE
Confidence 6899999988 476652 234555554 45 565543
No 181
>PLN02476 O-methyltransferase
Probab=78.74 E-value=2.9 Score=32.60 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=26.2
Q ss_pred CCccceEEEeccccChhhHHHHHHHHhhCCCceEEE
Q 038491 13 QSSEDLVTIALYWFDLPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 13 d~s~Dlv~~a~hw~D~~~~l~e~~RvLk~pgG~la~ 48 (146)
+++||+|+.-..=-+....+..+.+.|+ |||.+++
T Consensus 192 ~~~FD~VFIDa~K~~Y~~y~e~~l~lL~-~GGvIV~ 226 (278)
T PLN02476 192 GSSYDFAFVDADKRMYQDYFELLLQLVR-VGGVIVM 226 (278)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHhcC-CCcEEEE
Confidence 4689999877111135667888899999 9999876
No 182
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=78.03 E-value=3.5 Score=34.72 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=15.1
Q ss_pred hHHHHHHHHhhCCCceEEE
Q 038491 30 QFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 30 ~~l~e~~RvLk~pgG~la~ 48 (146)
+.++++.++|+ |||.+++
T Consensus 250 ~il~~a~~~L~-~gG~l~l 267 (506)
T PRK01544 250 IIAENAKQFLK-PNGKIIL 267 (506)
T ss_pred HHHHHHHHhcc-CCCEEEE
Confidence 35678899999 9999976
No 183
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=77.41 E-value=3.9 Score=32.64 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=27.8
Q ss_pred CCccceEEEe-----ccccChhhHHHHHHHHhhCCCceEEEE
Q 038491 13 QSSEDLVTIA-----LYWFDLPQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 13 d~s~Dlv~~a-----~hw~D~~~~l~e~~RvLk~pgG~la~~ 49 (146)
.+++|+|+.+ .| +.-..+..+..+|| |||..+-+
T Consensus 257 ~~~~d~VvTcfFIDTa~--NileYi~tI~~iLk-~GGvWiNl 295 (369)
T KOG2798|consen 257 AGSYDVVVTCFFIDTAH--NILEYIDTIYKILK-PGGVWINL 295 (369)
T ss_pred CCccceEEEEEEeechH--HHHHHHHHHHHhcc-CCcEEEec
Confidence 3579999988 35 67789999999999 99987653
No 184
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=76.72 E-value=9.4 Score=29.62 Aligned_cols=71 Identities=11% Similarity=0.057 Sum_probs=40.4
Q ss_pred CCccceEEEe-cccc----ChhhHHHHHHHHhhCCCceEEEEecCCCCCCHHHHHHHHHhhhhccCCCchhhhhhhhh
Q 038491 13 QSSEDLVTIA-LYWF----DLPQFYKQVKWILKEPTRVIIAWTYTMPEINESAGVVFKSFDRVDCEPFWKPQRKLLDN 85 (146)
Q Consensus 13 d~s~Dlv~~a-~hw~----D~~~~l~e~~RvLk~pgG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (146)
+.-+=++.++ +||+ |+...++.....|. ||..|++...+.. ..++..+.+.+.|.....+++...+.-+..
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~la-pGS~L~ish~t~d-~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~ 224 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALA-PGSYLAISHATDD-GAPERAEALEAVYAQAGSPGRPRSREEIAA 224 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS--TT-EEEEEEEB-T-TSHHHHHHHHHHHHHCCS----B-HHHHHH
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCC-CCceEEEEecCCC-CCHHHHHHHHHHHHcCCCCceecCHHHHHH
Confidence 3456666777 8988 47788999999999 9999999766432 234443445556655556665544443333
No 185
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=74.71 E-value=5.7 Score=32.83 Aligned_cols=18 Identities=6% Similarity=-0.040 Sum_probs=14.8
Q ss_pred hHHHHHHHHhhCCCceEEE
Q 038491 30 QFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 30 ~~l~e~~RvLk~pgG~la~ 48 (146)
+.++++.+.|+ |||.+++
T Consensus 362 ~Ii~~a~~~Lk-pgG~lil 379 (423)
T PRK14966 362 TLAQGAPDRLA-EGGFLLL 379 (423)
T ss_pred HHHHHHHHhcC-CCcEEEE
Confidence 56677788999 9999876
No 186
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=74.49 E-value=4.5 Score=30.91 Aligned_cols=33 Identities=15% Similarity=0.051 Sum_probs=24.6
Q ss_pred CccceEEEe-ccccChhhHHHHHHHHhhCCCceEEE
Q 038491 14 SSEDLVTIA-LYWFDLPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 14 ~s~Dlv~~a-~hw~D~~~~l~e~~RvLk~pgG~la~ 48 (146)
++||+|..- .+ -.....+..+.+.|+ |||++++
T Consensus 155 ~~fD~iFiDadK-~~Y~~y~~~~l~ll~-~GGviv~ 188 (247)
T PLN02589 155 GTFDFIFVDADK-DNYINYHKRLIDLVK-VGGVIGY 188 (247)
T ss_pred CcccEEEecCCH-HHhHHHHHHHHHhcC-CCeEEEE
Confidence 689999977 11 123566777889999 9999876
No 187
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.84 E-value=4.3 Score=30.83 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=27.4
Q ss_pred CCCCccceEEEecccc-ChhhHHHHHHHHhhCCCceEEE
Q 038491 11 ATQSSEDLVTIALYWF-DLPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 11 ~~d~s~Dlv~~a~hw~-D~~~~l~e~~RvLk~pgG~la~ 48 (146)
.+.++||+++.= ||- +-...+.++-|.|| +||++++
T Consensus 145 ~~~~tfDfaFvD-adK~nY~~y~e~~l~Llr-~GGvi~~ 181 (237)
T KOG1663|consen 145 GESGTFDFAFVD-ADKDNYSNYYERLLRLLR-VGGVIVV 181 (237)
T ss_pred CCCCceeEEEEc-cchHHHHHHHHHHHhhcc-cccEEEE
Confidence 367899999876 111 12278899999999 9999987
No 188
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=73.72 E-value=5.6 Score=29.02 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=37.9
Q ss_pred ccccccCC-----CCCCccceEEEe---cccc--ChhhHHHHHHHHhhCCCceEEEEecCC
Q 038491 3 ITELEQIV-----ATQSSEDLVTIA---LYWF--DLPQFYKQVKWILKEPTRVIIAWTYTM 53 (146)
Q Consensus 3 ~~~~e~l~-----~~d~s~Dlv~~a---~hw~--D~~~~l~e~~RvLk~pgG~la~~~~~~ 53 (146)
++|+.++. ..+.-||.|+|+ .... -.-+-++++.--|+ +||.++-..|+.
T Consensus 100 ~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~-~gg~lvqftYgp 159 (194)
T COG3963 100 NGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLP-AGGPLVQFTYGP 159 (194)
T ss_pred ccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcC-CCCeEEEEEecC
Confidence 45666654 778899999999 2322 34457788888899 999999999983
No 189
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=73.67 E-value=4.5 Score=35.48 Aligned_cols=39 Identities=21% Similarity=0.195 Sum_probs=28.2
Q ss_pred CCccceEEEe---c-------cc----cChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 13 QSSEDLVTIA---L-------YW----FDLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 13 d~s~Dlv~~a---~-------hw----~D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
.++||+|++- + .- -+....+..+.++|+ |||.+++..+.
T Consensus 606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~-~gG~l~~~~~~ 658 (702)
T PRK11783 606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLR-PGGTLYFSNNK 658 (702)
T ss_pred CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcC-CCCEEEEEeCC
Confidence 4689999986 1 10 134557788899999 99999876543
No 190
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=73.42 E-value=14 Score=26.14 Aligned_cols=54 Identities=20% Similarity=0.158 Sum_probs=31.5
Q ss_pred CccceEEEe--c---------cccChh---hHHHHHHHHhhCCCceEEEEecCCCCCCHHHHHHHHHhhh
Q 038491 14 SSEDLVTIA--L---------YWFDLP---QFYKQVKWILKEPTRVIIAWTYTMPEINESAGVVFKSFDR 69 (146)
Q Consensus 14 ~s~Dlv~~a--~---------hw~D~~---~~l~e~~RvLk~pgG~la~~~~~~~~~~~~~~~~~~~~~~ 69 (146)
..||+|+|= . |+.-.. ..+.-+.+.|| |||++++-.+..+.. ..+...++.++.
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~-~gG~~v~K~~~~~~~-~~~~~~l~~~F~ 157 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLK-PGGTFVIKVFKGPEI-EELIYLLKRCFS 157 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHC-TTEEEEEEESSSTTS-HHHHHHHHHHHH
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhc-CCCEEEEEeccCccH-HHHHHHHHhCCe
Confidence 789999986 1 222222 23444557799 999998877654444 354444444443
No 191
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=73.23 E-value=4.1 Score=30.21 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=26.0
Q ss_pred CCccceEEEe-ccccChhhHHHHHHHHhhCCCceEEE
Q 038491 13 QSSEDLVTIA-LYWFDLPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 13 d~s~Dlv~~a-~hw~D~~~~l~e~~RvLk~pgG~la~ 48 (146)
.+.||+|..- -. -+....+..+.+.|+ |||++++
T Consensus 119 ~~~fD~VFiDa~K-~~y~~y~~~~~~ll~-~ggvii~ 153 (205)
T PF01596_consen 119 EGQFDFVFIDADK-RNYLEYFEKALPLLR-PGGVIIA 153 (205)
T ss_dssp TTSEEEEEEESTG-GGHHHHHHHHHHHEE-EEEEEEE
T ss_pred CCceeEEEEcccc-cchhhHHHHHhhhcc-CCeEEEE
Confidence 3589999987 21 135567778889999 9999987
No 192
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=73.02 E-value=2.4 Score=29.97 Aligned_cols=23 Identities=4% Similarity=-0.236 Sum_probs=19.5
Q ss_pred ccccccCCCCCCccceEEEe--ccc
Q 038491 3 ITELEQIVATQSSEDLVTIA--LYW 25 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a--~hw 25 (146)
.+|++++++++.++|.|++. +|.
T Consensus 65 ~~D~~~~~~~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 65 HGDALKFDLPKLQPYKVVGNLPYNI 89 (169)
T ss_pred ECchhcCCccccCCCEEEECCCccc
Confidence 46888899888889999998 775
No 193
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=72.64 E-value=7.8 Score=28.46 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=29.7
Q ss_pred ccceEEEe-ccccChhhHHHHHHHHhhCCCceEEEEec
Q 038491 15 SEDLVTIA-LYWFDLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 15 s~Dlv~~a-~hw~D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
++|.|+.+ - -..+..++.+..-|| |||++++..-
T Consensus 102 ~~daiFIGGg--~~i~~ile~~~~~l~-~ggrlV~nai 136 (187)
T COG2242 102 SPDAIFIGGG--GNIEEILEAAWERLK-PGGRLVANAI 136 (187)
T ss_pred CCCEEEECCC--CCHHHHHHHHHHHcC-cCCeEEEEee
Confidence 79999999 5 468999999999999 9999988543
No 194
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=71.16 E-value=3.8 Score=30.61 Aligned_cols=47 Identities=19% Similarity=0.138 Sum_probs=31.7
Q ss_pred cccccCCCCC-CccceEEEe-----ccccChhhHHHHHHHHhhCCCceE--EEEec
Q 038491 4 TELEQIVATQ-SSEDLVTIA-----LYWFDLPQFYKQVKWILKEPTRVI--IAWTY 51 (146)
Q Consensus 4 ~~~e~l~~~d-~s~Dlv~~a-----~hw~D~~~~l~e~~RvLk~pgG~l--a~~~~ 51 (146)
+|+-+++-.+ ++||+|.=. ++--.+++-.+.++++|| |||.+ ....|
T Consensus 104 gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~-p~g~~lLi~l~~ 158 (218)
T PF05724_consen 104 GDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLK-PGGRGLLITLEY 158 (218)
T ss_dssp S-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEE-EEEEEEEEEEES
T ss_pred cccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhC-CCCcEEEEEEEc
Confidence 3444554333 479999933 455578889999999999 99994 44444
No 195
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=70.59 E-value=9.3 Score=32.03 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=19.6
Q ss_pred hhHHHHHHHHhhCCCceEEEEecCC
Q 038491 29 PQFYKQVKWILKEPTRVIIAWTYTM 53 (146)
Q Consensus 29 ~~~l~e~~RvLk~pgG~la~~~~~~ 53 (146)
.+.+..+.+.|| |||+|+..+++.
T Consensus 222 ~~iL~~A~~~Lk-pGG~LVYSTCT~ 245 (470)
T PRK11933 222 RELIESAFHALK-PGGTLVYSTCTL 245 (470)
T ss_pred HHHHHHHHHHcC-CCcEEEEECCCC
Confidence 456788999999 999998877653
No 196
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=69.46 E-value=6.1 Score=30.92 Aligned_cols=39 Identities=15% Similarity=0.348 Sum_probs=25.6
Q ss_pred CCccceEEEe---c---cc--c-ChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 13 QSSEDLVTIA---L---YW--F-DLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 13 d~s~Dlv~~a---~---hw--~-D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
.+.||+|++= | .+ . |..+.+..+.++|+ |||.|+++.++
T Consensus 193 ~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~-~gG~l~~~scs 240 (286)
T PF10672_consen 193 GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLK-PGGLLLTCSCS 240 (286)
T ss_dssp TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEE-EEEEEEEEE--
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcC-CCCEEEEEcCC
Confidence 4589999986 2 11 1 44556777889999 99999877664
No 197
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=65.51 E-value=2.8 Score=26.98 Aligned_cols=36 Identities=19% Similarity=0.083 Sum_probs=25.1
Q ss_pred CCccceEEEe-cccc-ChhhHHHHHHHHhhCCCceEEEE
Q 038491 13 QSSEDLVTIA-LYWF-DLPQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 13 d~s~Dlv~~a-~hw~-D~~~~l~e~~RvLk~pgG~la~~ 49 (146)
+.++|+|..= -|-. .....+..+.+.|+ |||++++-
T Consensus 67 ~~~~dli~iDg~H~~~~~~~dl~~~~~~l~-~ggviv~d 104 (106)
T PF13578_consen 67 DGPIDLIFIDGDHSYEAVLRDLENALPRLA-PGGVIVFD 104 (106)
T ss_dssp H--EEEEEEES---HHHHHHHHHHHGGGEE-EEEEEEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHcC-CCeEEEEe
Confidence 6789999988 6633 56677888888899 99988764
No 198
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=65.05 E-value=11 Score=30.25 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=19.4
Q ss_pred hHHHHHHHHhhCCCceEEEEecCC
Q 038491 30 QFYKQVKWILKEPTRVIIAWTYTM 53 (146)
Q Consensus 30 ~~l~e~~RvLk~pgG~la~~~~~~ 53 (146)
+.+..+.++|| |||.|+..+.+.
T Consensus 269 ~iL~~a~~~lk-~GG~LVYSTCS~ 291 (355)
T COG0144 269 EILAAALKLLK-PGGVLVYSTCSL 291 (355)
T ss_pred HHHHHHHHhcC-CCCEEEEEccCC
Confidence 47788999999 999999987754
No 199
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=62.49 E-value=22 Score=21.10 Aligned_cols=25 Identities=8% Similarity=0.040 Sum_probs=18.2
Q ss_pred ccccChhhHHHHHHHHhhCCCceEEEE
Q 038491 23 LYWFDLPQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 23 ~hw~D~~~~l~e~~RvLk~pgG~la~~ 49 (146)
.++.+ +.-.+++.+.+. .||++.+.
T Consensus 45 ~~~~~-~~~~~~l~~~v~-~G~~lvl~ 69 (70)
T PF14258_consen 45 LRLSE-PEEAEALLEWVE-AGNTLVLA 69 (70)
T ss_pred CCCCc-hHHHHHHHHHHH-cCCEEEEe
Confidence 56544 566778888888 88888764
No 200
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=58.92 E-value=11 Score=29.58 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=24.8
Q ss_pred CCccceEEEe---ccccChhhHHHHHHHHhhCCCceEEEE
Q 038491 13 QSSEDLVTIA---LYWFDLPQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 13 d~s~Dlv~~a---~hw~D~~~~l~e~~RvLk~pgG~la~~ 49 (146)
.+-||+|..+ .|.+.++ +.++++ |||+|++=
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a-~~A~LvvE 253 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALA-PDAVLVVE 253 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhC-CCCEEEEE
Confidence 3579999988 6877665 788999 99998774
No 201
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=57.96 E-value=10 Score=28.74 Aligned_cols=35 Identities=14% Similarity=-0.033 Sum_probs=25.7
Q ss_pred ccceEEEe-ccccChhhHHHHHHHHhhCCCceEEEEe
Q 038491 15 SEDLVTIA-LYWFDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 15 s~Dlv~~a-~hw~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
.+|+|.+- .+=-..+-+...+...|| +||.+++.-
T Consensus 143 ~VDvI~~DVaQp~Qa~I~~~Na~~fLk-~gG~~~i~i 178 (229)
T PF01269_consen 143 MVDVIFQDVAQPDQARIAALNARHFLK-PGGHLIISI 178 (229)
T ss_dssp -EEEEEEE-SSTTHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred cccEEEecCCChHHHHHHHHHHHhhcc-CCcEEEEEE
Confidence 79999988 432234557778889999 999988753
No 202
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=57.72 E-value=7 Score=31.17 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=13.4
Q ss_pred cCCCCCCccceEEEe--ccccC
Q 038491 8 QIVATQSSEDLVTIA--LYWFD 27 (146)
Q Consensus 8 ~l~~~d~s~Dlv~~a--~hw~D 27 (146)
.=-||++|+|+++++ +||..
T Consensus 100 ~rLfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 100 GRLFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp S--S-TT-EEEEEEES-TTB-S
T ss_pred hccCCCCceEEEEEechhhhcc
Confidence 334899999999999 99985
No 203
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=57.48 E-value=8.2 Score=28.68 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=22.5
Q ss_pred CCCccceEEEe-ccccChhhHHHHHHHHhhCCCceEEEEe
Q 038491 12 TQSSEDLVTIA-LYWFDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 12 ~d~s~Dlv~~a-~hw~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
+...||.|++. .-. +.+ ....+.|| +||++++-.
T Consensus 138 ~~apfD~I~v~~a~~-~ip---~~l~~qL~-~gGrLV~pi 172 (209)
T PF01135_consen 138 EEAPFDRIIVTAAVP-EIP---EALLEQLK-PGGRLVAPI 172 (209)
T ss_dssp GG-SEEEEEESSBBS-S-----HHHHHTEE-EEEEEEEEE
T ss_pred cCCCcCEEEEeeccc-hHH---HHHHHhcC-CCcEEEEEE
Confidence 45689999998 332 333 44667799 999998743
No 204
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=56.84 E-value=22 Score=27.75 Aligned_cols=44 Identities=9% Similarity=0.090 Sum_probs=27.4
Q ss_pred ccccCCCCCCccceEEEecccc----ChhhHHHHHHHHhhCCCceEEEE
Q 038491 5 ELEQIVATQSSEDLVTIALYWF----DLPQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 5 ~~e~l~~~d~s~Dlv~~a~hw~----D~~~~l~e~~RvLk~pgG~la~~ 49 (146)
|+.+.+.+-..||+|..|..-- +..+.+..+.+..+ ||..+++-
T Consensus 182 d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~-~ga~l~~R 229 (276)
T PF03059_consen 182 DVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMA-PGARLVVR 229 (276)
T ss_dssp -GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS--TTSEEEEE
T ss_pred chhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCC-CCcEEEEe
Confidence 4444554556899999882222 78999999999999 99988775
No 205
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=54.35 E-value=15 Score=25.00 Aligned_cols=42 Identities=26% Similarity=0.335 Sum_probs=33.6
Q ss_pred CCCccceEEEeccccChhhHHHHHHHHhhCCCceEEEEecCCC
Q 038491 12 TQSSEDLVTIALYWFDLPQFYKQVKWILKEPTRVIIAWTYTMP 54 (146)
Q Consensus 12 ~d~s~Dlv~~a~hw~D~~~~l~e~~RvLk~pgG~la~~~~~~~ 54 (146)
....+|+|+.+.--.+.+..++.+++.+. |+..+.++.++..
T Consensus 64 ~~~~~D~viv~vKa~~~~~~l~~l~~~~~-~~t~iv~~qNG~g 105 (151)
T PF02558_consen 64 DAGPYDLVIVAVKAYQLEQALQSLKPYLD-PNTTIVSLQNGMG 105 (151)
T ss_dssp HHSTESEEEE-SSGGGHHHHHHHHCTGEE-TTEEEEEESSSSS
T ss_pred ccCCCcEEEEEecccchHHHHHHHhhccC-CCcEEEEEeCCCC
Confidence 46789999999433478899999999999 9988888877753
No 206
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=52.98 E-value=7.7 Score=26.41 Aligned_cols=36 Identities=11% Similarity=0.207 Sum_probs=24.3
Q ss_pred CccceEEEe-cc-ccC----hhhHHHHHHHHhhCCCceEEEEe
Q 038491 14 SSEDLVTIA-LY-WFD----LPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 14 ~s~Dlv~~a-~h-w~D----~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
..||+|.-- |- =.+ -..++++++|.++ |||+++-++
T Consensus 49 ~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~-~~~~l~Tys 90 (124)
T PF05430_consen 49 ARFDAWYLDGFSPAKNPELWSEELFKKLARLSK-PGGTLATYS 90 (124)
T ss_dssp T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEE-EEEEEEES-
T ss_pred ccCCEEEecCCCCcCCcccCCHHHHHHHHHHhC-CCcEEEEee
Confidence 778888855 21 112 2569999999999 999987753
No 207
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=52.58 E-value=30 Score=24.68 Aligned_cols=38 Identities=21% Similarity=0.141 Sum_probs=24.4
Q ss_pred CCccceEEEe--ccccChhhHHHHHHHHhhCCCceEEEEe
Q 038491 13 QSSEDLVTIA--LYWFDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 13 d~s~Dlv~~a--~hw~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
.++||+|++= |=--+...-..+..|.|.|+++.+.+.+
T Consensus 84 ~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 84 KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEec
Confidence 5699999988 5111343445666777754878776643
No 208
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=49.65 E-value=7.2 Score=32.46 Aligned_cols=42 Identities=17% Similarity=0.337 Sum_probs=28.7
Q ss_pred ccccccCCCCCCccceEEEe-cc-ccC---hhhHHHHHHHHhhCCCceE
Q 038491 3 ITELEQIVATQSSEDLVTIA-LY-WFD---LPQFYKQVKWILKEPTRVI 46 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a-~h-w~D---~~~~l~e~~RvLk~pgG~l 46 (146)
.++.+++..|. .+|+|++- += +-| .+..+.-+.|.|| |||.+
T Consensus 247 ~~d~r~v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rfLk-p~Gi~ 293 (448)
T PF05185_consen 247 HGDMREVELPE-KVDIIVSELLGSFGDNELSPECLDAADRFLK-PDGIM 293 (448)
T ss_dssp ES-TTTSCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGGEE-EEEEE
T ss_pred eCcccCCCCCC-ceeEEEEeccCCccccccCHHHHHHHHhhcC-CCCEE
Confidence 46788888776 79999998 32 112 3456888899999 99876
No 209
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=49.56 E-value=12 Score=30.14 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=31.6
Q ss_pred ccccccCCCCCCccceEEEe-c-cccC----hhhHHHHHHHHhhCCCceE
Q 038491 3 ITELEQIVATQSSEDLVTIA-L-YWFD----LPQFYKQVKWILKEPTRVI 46 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a-~-hw~D----~~~~l~e~~RvLk~pgG~l 46 (146)
.+.+|++.+|-..+|.|++- + +|.= +...+--=.|.|+ |||.+
T Consensus 115 ~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~-~~G~i 163 (346)
T KOG1499|consen 115 KGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLK-EGGLI 163 (346)
T ss_pred ecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccC-CCceE
Confidence 57788888888999999998 2 3332 3344444568999 99986
No 210
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=49.18 E-value=51 Score=26.35 Aligned_cols=52 Identities=10% Similarity=-0.034 Sum_probs=34.3
Q ss_pred CccceEEEe--ccccChhhHHHHHHHHhhCCCceEEEEecCCCCCCHHHHHHHHHh
Q 038491 14 SSEDLVTIA--LYWFDLPQFYKQVKWILKEPTRVIIAWTYTMPEINESAGVVFKSF 67 (146)
Q Consensus 14 ~s~Dlv~~a--~hw~D~~~~l~e~~RvLk~pgG~la~~~~~~~~~~~~~~~~~~~~ 67 (146)
+++|+|+.- -.---.+-.+.++.+.|+ |||.+.+.+-...-+ ..+.+.++++
T Consensus 75 ~~~d~~~~~~pk~k~~~~~~l~~~~~~l~-~g~~i~~~G~~~~g~-~s~~k~~~~~ 128 (342)
T PRK09489 75 ADCDTLIYYWPKNKQEAQFQLMNLLSLLP-VGTDIFVVGENRSGV-RSAEKMLADY 128 (342)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHhCC-CCCEEEEEEeccccH-HHHHHHHHHh
Confidence 478888876 232235567899999999 999999987543222 3344444444
No 211
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=47.16 E-value=27 Score=26.00 Aligned_cols=34 Identities=12% Similarity=0.284 Sum_probs=23.2
Q ss_pred hHHHHHHHHhhCCCceEEEEecCCCCCCHHHHHHHHH
Q 038491 30 QFYKQVKWILKEPTRVIIAWTYTMPEINESAGVVFKS 66 (146)
Q Consensus 30 ~~l~e~~RvLk~pgG~la~~~~~~~~~~~~~~~~~~~ 66 (146)
.-+.-+.++|+ |||.|.|...+... .++...+..
T Consensus 162 ~Y~d~v~~ll~-~~gifvItSCN~T~--dELv~~f~~ 195 (227)
T KOG1271|consen 162 VYLDSVEKLLS-PGGIFVITSCNFTK--DELVEEFEN 195 (227)
T ss_pred eehhhHhhccC-CCcEEEEEecCccH--HHHHHHHhc
Confidence 34677899999 99999997665432 444444443
No 212
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=47.15 E-value=13 Score=28.25 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=28.0
Q ss_pred CCccceEEEe--c-cccChhhHHHHHHHHhhCC-CceEEE
Q 038491 13 QSSEDLVTIA--L-YWFDLPQFYKQVKWILKEP-TRVIIA 48 (146)
Q Consensus 13 d~s~Dlv~~a--~-hw~D~~~~l~e~~RvLk~p-gG~la~ 48 (146)
|-.+|+|+|- + .=+|+-+.++.++.||+ | +|.+.+
T Consensus 167 ~~k~dli~clNlLDRc~~p~kLL~Di~~vl~-psngrviv 205 (288)
T KOG3987|consen 167 DVKLDLILCLNLLDRCFDPFKLLEDIHLVLA-PSNGRVIV 205 (288)
T ss_pred CceeehHHHHHHHHhhcChHHHHHHHHHHhc-cCCCcEEE
Confidence 3459999998 2 33589999999999999 9 787654
No 213
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=47.02 E-value=34 Score=27.57 Aligned_cols=47 Identities=11% Similarity=0.197 Sum_probs=37.8
Q ss_pred ccccccCCCCCCccceEEEe-ccccChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 3 ITELEQIVATQSSEDLVTIA-LYWFDLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a-~hw~D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
.+|+...+..-+.+|-|++. .+ +-..++..+.+.|| +||.+-+....
T Consensus 244 ~gD~rev~~~~~~aDrIim~~p~--~a~~fl~~A~~~~k-~~g~iHyy~~~ 291 (341)
T COG2520 244 LGDAREVAPELGVADRIIMGLPK--SAHEFLPLALELLK-DGGIIHYYEFV 291 (341)
T ss_pred eccHHHhhhccccCCEEEeCCCC--cchhhHHHHHHHhh-cCcEEEEEecc
Confidence 35666666555889999999 66 77889999999999 99999887654
No 214
>PRK14755 transcriptional regulatory protein PufK; Provisional
Probab=46.72 E-value=15 Score=17.38 Aligned_cols=16 Identities=13% Similarity=0.063 Sum_probs=12.4
Q ss_pred HHHHHHHHhhCCCceEE
Q 038491 31 FYKQVKWILKEPTRVII 47 (146)
Q Consensus 31 ~l~e~~RvLk~pgG~la 47 (146)
.-+.++.||+ .||...
T Consensus 8 rhqhvasvlr-sgg~~~ 23 (26)
T PRK14755 8 RHQHVASVLR-SGGXXX 23 (26)
T ss_pred hHHHHHHHHH-cCCccc
Confidence 3467899999 999653
No 215
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=44.70 E-value=36 Score=25.80 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=29.8
Q ss_pred cccccCCCCCCccceEEEeccccChhhHHHHHHHHhhCCCceEEE
Q 038491 4 TELEQIVATQSSEDLVTIALYWFDLPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a~hw~D~~~~l~e~~RvLk~pgG~la~ 48 (146)
+|.-..--+.+.+|.|.++. +.++..++.-..|+ |||.+.+
T Consensus 151 GDgr~g~~e~a~YDaIhvGA---aa~~~pq~l~dqL~-~gGrlli 191 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGA---AASELPQELLDQLK-PGGRLLI 191 (237)
T ss_pred CCccccCCccCCcceEEEcc---CccccHHHHHHhhc-cCCeEEE
Confidence 45555556777899998881 23455678888999 9999877
No 216
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=44.50 E-value=46 Score=27.12 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=18.9
Q ss_pred HHHHHHHHhhCCCceEEEEecCCC
Q 038491 31 FYKQVKWILKEPTRVIIAWTYTMP 54 (146)
Q Consensus 31 ~l~e~~RvLk~pgG~la~~~~~~~ 54 (146)
-+....|.|| +||+++..+.+..
T Consensus 278 iL~rgl~lLk-~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 278 ILRRGLRLLK-VGGRLVYSTCSLN 300 (375)
T ss_pred HHHHHHHHhc-CCCEEEEeccCCC
Confidence 5677889999 9999999887644
No 217
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=43.83 E-value=15 Score=26.62 Aligned_cols=38 Identities=11% Similarity=0.025 Sum_probs=26.3
Q ss_pred CCCccceEEEe--ccccC-hhhHHHHHH--HHhhCCCceEEEEe
Q 038491 12 TQSSEDLVTIA--LYWFD-LPQFYKQVK--WILKEPTRVIIAWT 50 (146)
Q Consensus 12 ~d~s~Dlv~~a--~hw~D-~~~~l~e~~--RvLk~pgG~la~~~ 50 (146)
.+..||+|.+- +..-+ .++.+..+. .+|+ ++|.+++=.
T Consensus 111 ~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~-~~~~ii~E~ 153 (183)
T PF03602_consen 111 KGEKFDIIFLDPPYAKGLYYEELLELLAENNLLN-EDGLIIIEH 153 (183)
T ss_dssp CTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEE-EEEEEEEEE
T ss_pred cCCCceEEEECCCcccchHHHHHHHHHHHCCCCC-CCEEEEEEe
Confidence 46789999888 66555 477777776 7888 888776633
No 218
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=38.78 E-value=1.3e+02 Score=23.84 Aligned_cols=50 Identities=12% Similarity=0.054 Sum_probs=32.6
Q ss_pred ccccccCCCCCCccceEEEe-cccc--Chh--------------------------hHHHHHHHHhhCCCceEEEEecCC
Q 038491 3 ITELEQIVATQSSEDLVTIA-LYWF--DLP--------------------------QFYKQVKWILKEPTRVIIAWTYTM 53 (146)
Q Consensus 3 ~~~~e~l~~~d~s~Dlv~~a-~hw~--D~~--------------------------~~l~e~~RvLk~pgG~la~~~~~~ 53 (146)
..-.+..+..++..|++++. =.-+ |.+ ..+.=+.|.|+ |||.+.+-....
T Consensus 210 ~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq-~gg~~~le~~~~ 288 (328)
T KOG2904|consen 210 SDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQ-PGGFEQLELVER 288 (328)
T ss_pred cccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcc-cCCeEEEEeccc
Confidence 33344566788999999998 1111 211 25566789999 999997755433
No 219
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=38.50 E-value=52 Score=27.71 Aligned_cols=17 Identities=6% Similarity=-0.124 Sum_probs=14.2
Q ss_pred HHHHHHhhCCCceEEEEe
Q 038491 33 KQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 33 ~e~~RvLk~pgG~la~~~ 50 (146)
..+.+.|+ |||.++++.
T Consensus 180 ~~~~~lL~-~~G~~~~I~ 196 (524)
T TIGR02987 180 EISLEIAN-KNGYVSIIS 196 (524)
T ss_pred HHHHHhcC-CCCEEEEEE
Confidence 45789999 999999864
No 220
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=36.54 E-value=48 Score=26.99 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=27.5
Q ss_pred CCccceEEEe-ccccChhhHHHHHHHHhhCCCceEEEEe
Q 038491 13 QSSEDLVTIA-LYWFDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 13 d~s~Dlv~~a-~hw~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
.+.||+|.+- +- ....++..+.+.++ |||.+++..
T Consensus 123 ~~~fD~V~lDP~G--s~~~~l~~al~~~~-~~gilyvSA 158 (382)
T PRK04338 123 ERKFDVVDIDPFG--SPAPFLDSAIRSVK-RGGLLCVTA 158 (382)
T ss_pred cCCCCEEEECCCC--CcHHHHHHHHHHhc-CCCEEEEEe
Confidence 4579999887 52 34678888888999 999998863
No 221
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=36.53 E-value=75 Score=24.23 Aligned_cols=37 Identities=11% Similarity=0.086 Sum_probs=27.0
Q ss_pred CCCccceEEEeccccChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 12 TQSSEDLVTIALYWFDLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 12 ~d~s~Dlv~~a~hw~D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
+.+.+|+|+.+. .....+.++.|.|+ +||+++..+..
T Consensus 229 ~~~~~D~vid~~---g~~~~~~~~~~~l~-~~G~~v~~g~~ 265 (338)
T cd08254 229 LGGGFDVIFDFV---GTQPTFEDAQKAVK-PGGRIVVVGLG 265 (338)
T ss_pred cCCCceEEEECC---CCHHHHHHHHHHhh-cCCEEEEECCC
Confidence 345688777551 12468899999999 99999887653
No 222
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=36.40 E-value=43 Score=25.91 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=26.0
Q ss_pred CCccceEEEe--c--c-ccChh-------------------hHHHHHHHHhhCCCceEEEEe
Q 038491 13 QSSEDLVTIA--L--Y-WFDLP-------------------QFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 13 d~s~Dlv~~a--~--h-w~D~~-------------------~~l~e~~RvLk~pgG~la~~~ 50 (146)
...||+|++. + . |.+.. .|+..+.+.|| +||+++++.
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk-~~G~~~~Il 183 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLK-PGGRAAIIL 183 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcc-cccceeEEe
Confidence 5789999999 2 3 42211 48899999999 999988864
No 223
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=36.18 E-value=35 Score=27.86 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=30.7
Q ss_pred cccccCCCCCCccceEEEe-cccc--C--hhhHHHHHHHHhhCCCceEE
Q 038491 4 TELEQIVATQSSEDLVTIA-LYWF--D--LPQFYKQVKWILKEPTRVII 47 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a-~hw~--D--~~~~l~e~~RvLk~pgG~la 47 (146)
|.+|++.+|+ .+|+|++- +-++ + .-..+-.++|.|| |.|...
T Consensus 233 GKiEdieLPE-k~DviISEPMG~mL~NERMLEsYl~Ark~l~-P~GkMf 279 (517)
T KOG1500|consen 233 GKIEDIELPE-KVDVIISEPMGYMLVNERMLESYLHARKWLK-PNGKMF 279 (517)
T ss_pred CccccccCch-hccEEEeccchhhhhhHHHHHHHHHHHhhcC-CCCccc
Confidence 6788898885 59999998 4333 2 2345667889999 999763
No 224
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=36.07 E-value=72 Score=27.76 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=33.9
Q ss_pred ccceEEEe-ccccChhhHHHHHHHHhhCCCceEEEEecCCC
Q 038491 15 SEDLVTIA-LYWFDLPQFYKQVKWILKEPTRVIIAWTYTMP 54 (146)
Q Consensus 15 s~Dlv~~a-~hw~D~~~~l~e~~RvLk~pgG~la~~~~~~~ 54 (146)
.+++|..+ +.+-|..++-+-+.|.-| +||++.++....+
T Consensus 487 ~~~~v~~~~~~~~~~~~~e~~~~~~~~-~G~~v~i~~~~~~ 526 (616)
T PF10131_consen 487 KYKVVYLSGPSYKDESKAEKLVSKLAR-SGGKVVIDMPRIP 526 (616)
T ss_pred cceEEEecCCCccchhHHHHHHHHHHh-CCCEEEEEcCCCC
Confidence 79999999 888899999999999999 9998888766543
No 225
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=34.32 E-value=44 Score=25.07 Aligned_cols=42 Identities=19% Similarity=0.122 Sum_probs=28.5
Q ss_pred cccccCCCCCCccceEEEe-ccccChhhHHHHHHHHhhCCCceEEE
Q 038491 4 TELEQIVATQSSEDLVTIA-LYWFDLPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 4 ~~~e~l~~~d~s~Dlv~~a-~hw~D~~~~l~e~~RvLk~pgG~la~ 48 (146)
+.+|+..-...-||+|||- +- +......=+...|| +||.+.+
T Consensus 124 ~RaE~~~~~~~~~D~vtsRAva--~L~~l~e~~~pllk-~~g~~~~ 166 (215)
T COG0357 124 GRAEEFGQEKKQYDVVTSRAVA--SLNVLLELCLPLLK-VGGGFLA 166 (215)
T ss_pred hhHhhcccccccCcEEEeehcc--chHHHHHHHHHhcc-cCCcchh
Confidence 3455554322229999998 55 56777777888889 9887654
No 226
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=33.92 E-value=73 Score=26.28 Aligned_cols=41 Identities=12% Similarity=0.020 Sum_probs=26.9
Q ss_pred CCCCCCccceEEEeccccChhhHHHHHHHHhhCCCceEEEEec
Q 038491 9 IVATQSSEDLVTIALYWFDLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 9 l~~~d~s~Dlv~~a~hw~D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
+++.+++||+|++.--+......++.+.+ |+ |++.+++.++
T Consensus 361 ~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~-~~~ivyvSCn 401 (443)
T PRK13168 361 QPWALGGFDKVLLDPPRAGAAEVMQALAK-LG-PKRIVYVSCN 401 (443)
T ss_pred hhhhcCCCCEEEECcCCcChHHHHHHHHh-cC-CCeEEEEEeC
Confidence 34667789999987112234455666666 58 9988888664
No 227
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=33.69 E-value=31 Score=22.57 Aligned_cols=36 Identities=14% Similarity=0.069 Sum_probs=28.0
Q ss_pred CccceEEEeccccChhhHHHHHHHHhhCCCceEEEEecCC
Q 038491 14 SSEDLVTIALYWFDLPQFYKQVKWILKEPTRVIIAWTYTM 53 (146)
Q Consensus 14 ~s~Dlv~~a~hw~D~~~~l~e~~RvLk~pgG~la~~~~~~ 53 (146)
..+|+|+-+ ..-+..++++..+|+ |||++++.+...
T Consensus 57 ~~~d~vid~---~g~~~~~~~~~~~l~-~~G~~v~vg~~~ 92 (130)
T PF00107_consen 57 RGVDVVIDC---VGSGDTLQEAIKLLR-PGGRIVVVGVYG 92 (130)
T ss_dssp SSEEEEEES---SSSHHHHHHHHHHEE-EEEEEEEESSTS
T ss_pred ccceEEEEe---cCcHHHHHHHHHHhc-cCCEEEEEEccC
Confidence 468888765 113679999999999 999999987643
No 228
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=33.40 E-value=2.1e+02 Score=21.50 Aligned_cols=57 Identities=11% Similarity=0.011 Sum_probs=36.6
Q ss_pred CCCCccceEEEe-------ccccChhhHHHHHH-------HHhhCCCceEEEEecCCCCCCHHHHHHHHHhhh
Q 038491 11 ATQSSEDLVTIA-------LYWFDLPQFYKQVK-------WILKEPTRVIIAWTYTMPEINESAGVVFKSFDR 69 (146)
Q Consensus 11 ~~d~s~Dlv~~a-------~hw~D~~~~l~e~~-------RvLk~pgG~la~~~~~~~~~~~~~~~~~~~~~~ 69 (146)
+|+..+|+|++- ..-.|..+...-++ -.|+ |+|.+.+=.|.-.+ .+.+.+.++.++.
T Consensus 132 lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~-p~g~fvcK~w~g~e-~~~l~r~l~~~f~ 202 (232)
T KOG4589|consen 132 LPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLI-PNGSFVCKLWDGSE-EALLQRRLQAVFT 202 (232)
T ss_pred CCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcC-CCcEEEEEEecCCc-hHHHHHHHHHHhh
Confidence 367889999976 44456665555443 3468 99999885553322 3566666666665
No 229
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=32.99 E-value=83 Score=25.00 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=26.9
Q ss_pred ccceEEEe--cccc-C---hhhHHHHHHHHhhCCCceEEEEe
Q 038491 15 SEDLVTIA--LYWF-D---LPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 15 s~Dlv~~a--~hw~-D---~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
..++++++ +-.| | ....++-+++.|. |||.++..+
T Consensus 209 ~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~-pgG~lIyTg 249 (311)
T PF12147_consen 209 APTLAIVSGLYELFPDNDLVRRSLAGLARALE-PGGYLIYTG 249 (311)
T ss_pred CCCEEEEecchhhCCcHHHHHHHHHHHHHHhC-CCcEEEEcC
Confidence 46888877 4455 5 5568999999999 999997754
No 230
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=32.48 E-value=73 Score=20.37 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=23.5
Q ss_pred CCccceEEEe-ccccChhhHHHHHHHHhhCCCceEEEEec
Q 038491 13 QSSEDLVTIA-LYWFDLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 13 d~s~Dlv~~a-~hw~D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
.+++|+++.- ++=+++. ++.-+.-.+| -||.+.++.-
T Consensus 9 G~e~~~~i~d~~~g~~pn-al~a~~gtv~-gGGllill~p 46 (92)
T PF08351_consen 9 GQEFDLLIFDAFEGFDPN-ALAALAGTVR-GGGLLILLLP 46 (92)
T ss_dssp T--BSSEEEE-SS---HH-HHHHHHTTB--TT-EEEEEES
T ss_pred CCccCEEEEEccCCCCHH-HHHHHhccee-cCeEEEEEcC
Confidence 3568888887 6655554 7788899999 9999988753
No 231
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=31.87 E-value=18 Score=27.82 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=17.2
Q ss_pred CccceEEEe---ccccChhhHHHHHHHHhhCC
Q 038491 14 SSEDLVTIA---LYWFDLPQFYKQVKWILKEP 42 (146)
Q Consensus 14 ~s~Dlv~~a---~hw~D~~~~l~e~~RvLk~p 42 (146)
.-+|+||.+ |.--|.-..+.+-.|+|| |
T Consensus 55 ~GvDviT~GNH~wdkkei~~~i~~~~~ilR-P 85 (253)
T PF13277_consen 55 AGVDVITMGNHIWDKKEIFDFIDKEPRILR-P 85 (253)
T ss_dssp HT-SEEE--TTTTSSTTHHHHHHH-SSEE---
T ss_pred cCCCEEecCcccccCcHHHHHHhcCCCcEE-C
Confidence 358999999 444578888888889998 7
No 232
>PRK06853 indolepyruvate oxidoreductase subunit beta; Reviewed
Probab=30.15 E-value=1e+02 Score=22.22 Aligned_cols=32 Identities=16% Similarity=0.048 Sum_probs=21.7
Q ss_pred CCccceEEEeccccChhhHHHHHHHHhhCCCceEEEEe
Q 038491 13 QSSEDLVTIALYWFDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 13 d~s~Dlv~~a~hw~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
.+.+|+++|. |... +.....-|| |||++.+-.
T Consensus 66 ~~~~D~lva~----d~~~-~~~~~~~lk-~gg~ii~n~ 97 (197)
T PRK06853 66 EGKADLLLAF----EPLE-ALRYLPYLK-KGGKVVVNT 97 (197)
T ss_pred CCCCCEEEEe----CHHH-HHHHHHhcC-CCcEEEEEC
Confidence 3478999987 2222 345556789 999997753
No 233
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=29.75 E-value=51 Score=23.19 Aligned_cols=35 Identities=20% Similarity=-0.040 Sum_probs=25.9
Q ss_pred CCccceEEEe----ccccChhhHHHHHHHHhhCCCceEEE
Q 038491 13 QSSEDLVTIA----LYWFDLPQFYKQVKWILKEPTRVIIA 48 (146)
Q Consensus 13 d~s~Dlv~~a----~hw~D~~~~l~e~~RvLk~pgG~la~ 48 (146)
||..|+|+++ +-=-..+..+++++.-|+ ++|+..-
T Consensus 77 DnG~~~vVi~v~~~i~~~~leaTL~QaA~nL~-s~GR~~~ 115 (145)
T PF10726_consen 77 DNGADQVVIAVPPDITPEALEATLEQAASNLF-SGGRSGR 115 (145)
T ss_pred ECCCcEEEEEcCCCCCHHHHHHHHHHHHHhcc-ccCccCC
Confidence 6678888877 333357778999999999 8887654
No 234
>PF13065 DUF3928: Protein of unknown function (DUF3928)
Probab=29.61 E-value=1.4e+02 Score=18.68 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=23.8
Q ss_pred ChhhHHHHHHHHhhCCCceEEEEecCCCCCCHHHHHHHHH
Q 038491 27 DLPQFYKQVKWILKEPTRVIIAWTYTMPEINESAGVVFKS 66 (146)
Q Consensus 27 D~~~~l~e~~RvLk~pgG~la~~~~~~~~~~~~~~~~~~~ 66 (146)
+.+++++|++|+.. - |++....|. +.++.+.+..
T Consensus 56 e~~kalqeiarlve-l-grftyvhyr----n~eie~afea 89 (95)
T PF13065_consen 56 EQQKALQEIARLVE-L-GRFTYVHYR----NEEIEKAFEA 89 (95)
T ss_pred HHHHHHHHHHHHHH-h-cceeEEEec----cHHHHHHHHH
Confidence 78899999999998 4 566665664 3555555543
No 235
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=29.58 E-value=24 Score=27.41 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=18.6
Q ss_pred hHHHHHHHHh----hCCCceEEEEecC
Q 038491 30 QFYKQVKWIL----KEPTRVIIAWTYT 52 (146)
Q Consensus 30 ~~l~e~~RvL----k~pgG~la~~~~~ 52 (146)
+.|..+.+.| | |||+++..+.+
T Consensus 196 ~iL~~a~~~~~~~~k-~gG~lvYsTCS 221 (283)
T PF01189_consen 196 EILDNAAKLLNIDFK-PGGRLVYSTCS 221 (283)
T ss_dssp HHHHHHHHCEHHHBE-EEEEEEEEESH
T ss_pred HHHHHHHHhhccccc-CCCeEEEEecc
Confidence 4678889999 9 99999998764
No 236
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=29.49 E-value=99 Score=24.05 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=32.0
Q ss_pred CccceEEEe--ccccChhhHHHHHHHHhhCCCceEEEEecCCC
Q 038491 14 SSEDLVTIA--LYWFDLPQFYKQVKWILKEPTRVIIAWTYTMP 54 (146)
Q Consensus 14 ~s~Dlv~~a--~hw~D~~~~l~e~~RvLk~pgG~la~~~~~~~ 54 (146)
..+|+|+.+ .+ |...+++.+...|. |+..+..+.++..
T Consensus 69 ~~~D~viv~vK~~--~~~~al~~l~~~l~-~~t~vv~lQNGv~ 108 (305)
T PRK05708 69 EPIHRLLLACKAY--DAEPAVASLAHRLA-PGAELLLLQNGLG 108 (305)
T ss_pred cccCEEEEECCHH--hHHHHHHHHHhhCC-CCCEEEEEeCCCC
Confidence 468999999 44 68899999999999 9998888887754
No 237
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=28.89 E-value=1.6e+02 Score=19.24 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHhhCCCceEEEEecCCCCCCHHHHHHHHHhhh
Q 038491 28 LPQFYKQVKWILKEPTRVIIAWTYTMPEINESAGVVFKSFDR 69 (146)
Q Consensus 28 ~~~~l~e~~RvLk~pgG~la~~~~~~~~~~~~~~~~~~~~~~ 69 (146)
.+.+++|+..-|+ ||....+.--.... ..++.+.++++-.
T Consensus 41 ~d~~~~ev~~~L~-~GssAl~~lv~~~~-~d~v~~~l~~~gg 80 (102)
T PF06897_consen 41 DDEFIKEVGEALK-PGSSALFLLVDEAT-EDKVDAALRKFGG 80 (102)
T ss_pred CHHHHHHHHhhcC-CCceEEEEEeccCC-HHHHHHHHHhcCC
Confidence 4568999999999 98766554332211 2566667776654
No 238
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=28.27 E-value=1.3e+02 Score=21.35 Aligned_cols=40 Identities=20% Similarity=0.085 Sum_probs=30.7
Q ss_pred CCCCccceEEEe-cccc---------------ChhhHHHHHHHHhhCCCceEEEEec
Q 038491 11 ATQSSEDLVTIA-LYWF---------------DLPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 11 ~~d~s~Dlv~~a-~hw~---------------D~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
+..+.||.|+-. =|.- =+..|++.+.++|+ ++|.+.+.-.
T Consensus 71 ~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~-~~G~IhVTl~ 126 (166)
T PF10354_consen 71 LKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLK-PDGEIHVTLK 126 (166)
T ss_pred ccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeC
Confidence 467899999988 3543 13459999999999 9999877543
No 239
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=27.52 E-value=1.1e+02 Score=23.07 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=30.9
Q ss_pred CccceEEEe--ccccChhhHHHHHHHHhhCCCceEEEEecCC
Q 038491 14 SSEDLVTIA--LYWFDLPQFYKQVKWILKEPTRVIIAWTYTM 53 (146)
Q Consensus 14 ~s~Dlv~~a--~hw~D~~~~l~e~~RvLk~pgG~la~~~~~~ 53 (146)
..+|+|+.+ .+ +.+.+++.+...|. ++..+....++.
T Consensus 58 ~~~D~iiv~vKs~--~~~~~l~~l~~~l~-~~~~iv~~qNG~ 96 (293)
T TIGR00745 58 PPADLVIITVKAY--QTEEAAALLLPLIG-KNTKVLFLQNGL 96 (293)
T ss_pred CCCCEEEEeccch--hHHHHHHHhHhhcC-CCCEEEEccCCC
Confidence 469999999 44 78999999999999 998888777665
No 240
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=27.09 E-value=1.1e+02 Score=24.83 Aligned_cols=35 Identities=6% Similarity=0.031 Sum_probs=29.2
Q ss_pred CCccceEEEe-ccccChhhHHHHHHHHhhCCCceEEEEe
Q 038491 13 QSSEDLVTIA-LYWFDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 13 d~s~Dlv~~a-~hw~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
.+.||+|..- +. .+..++..+.+.++ +||.|++..
T Consensus 112 ~~~fDvIdlDPfG--s~~~fld~al~~~~-~~glL~vTa 147 (374)
T TIGR00308 112 NRKFHVIDIDPFG--TPAPFVDSAIQASA-ERGLLLVTA 147 (374)
T ss_pred CCCCCEEEeCCCC--CcHHHHHHHHHhcc-cCCEEEEEe
Confidence 3579999888 75 55689999999999 999999864
No 241
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=27.06 E-value=75 Score=23.11 Aligned_cols=27 Identities=22% Similarity=0.537 Sum_probs=18.1
Q ss_pred cceEEEe--ccccChhhHHHH-HHHHhhCCC
Q 038491 16 EDLVTIA--LYWFDLPQFYKQ-VKWILKEPT 43 (146)
Q Consensus 16 ~Dlv~~a--~hw~D~~~~l~e-~~RvLk~pg 43 (146)
.|.|+.. ++|+..+..++. +.||+. +|
T Consensus 62 aD~iV~~fPl~w~~~Pa~LK~wiD~V~~-~g 91 (184)
T PRK04930 62 HDVIVFQHPLYTYSCPALLKEWLDRVLS-RG 91 (184)
T ss_pred CCEEEEEcCccccCCcHHHHHHHHHHHh-cC
Confidence 5666666 777777776665 457776 65
No 242
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=26.59 E-value=1.3e+02 Score=23.34 Aligned_cols=39 Identities=10% Similarity=0.067 Sum_probs=30.7
Q ss_pred CccceEEEeccccChhhHHHHHHHHhhCCCceEEEEecCC
Q 038491 14 SSEDLVTIALYWFDLPQFYKQVKWILKEPTRVIIAWTYTM 53 (146)
Q Consensus 14 ~s~Dlv~~a~hw~D~~~~l~e~~RvLk~pgG~la~~~~~~ 53 (146)
..+|+|+.+.-..+....++.+...|+ |++.+....++.
T Consensus 71 ~~~D~vilavK~~~~~~~~~~l~~~~~-~~~~iv~lqNG~ 109 (313)
T PRK06249 71 PPCDWVLVGLKTTANALLAPLIPQVAA-PDAKVLLLQNGL 109 (313)
T ss_pred CCCCEEEEEecCCChHhHHHHHhhhcC-CCCEEEEecCCC
Confidence 468999999333367788999999999 999888777664
No 243
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=26.54 E-value=85 Score=23.63 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=21.6
Q ss_pred CccceEEEeccccChhhHHHHHHHHhhCCCceEEEEe
Q 038491 14 SSEDLVTIALYWFDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 14 ~s~Dlv~~a~hw~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
..+|+++++++| .+..+.+.|+ | |.+.+..
T Consensus 142 ~~~DvsfiS~~~-----~l~~i~~~l~-~-~~~~~L~ 171 (228)
T TIGR00478 142 ATFDVSFISLIS-----ILPELDLLLN-P-NDLTLLF 171 (228)
T ss_pred eeeeEEEeehHh-----HHHHHHHHhC-c-CeEEEEc
Confidence 367776666555 4889999999 9 7665543
No 244
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=26.08 E-value=52 Score=26.17 Aligned_cols=33 Identities=9% Similarity=0.075 Sum_probs=23.7
Q ss_pred ccceEEEe------ccccChhhHHHHHHH-HhhCCCceEEE
Q 038491 15 SEDLVTIA------LYWFDLPQFYKQVKW-ILKEPTRVIIA 48 (146)
Q Consensus 15 s~Dlv~~a------~hw~D~~~~l~e~~R-vLk~pgG~la~ 48 (146)
...+|+.- +.......+|+++++ +|+ |||.|.+
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~-~~d~lLi 195 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALS-PSDSFLI 195 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCC-CCCEEEE
Confidence 35566544 333345678999999 999 9999877
No 245
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=25.46 E-value=1.1e+02 Score=22.88 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=21.7
Q ss_pred CCCccceEEEeccccChhhHHHHHHHHhhCCCceEEEEe
Q 038491 12 TQSSEDLVTIALYWFDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 12 ~d~s~Dlv~~a~hw~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
+...||.|++..--..+++. ..+-|| |||++++-.
T Consensus 135 ~~aPyD~I~Vtaaa~~vP~~---Ll~QL~-~gGrlv~Pv 169 (209)
T COG2518 135 EEAPYDRIIVTAAAPEVPEA---LLDQLK-PGGRLVIPV 169 (209)
T ss_pred CCCCcCEEEEeeccCCCCHH---HHHhcc-cCCEEEEEE
Confidence 34679998877111133333 345699 999998744
No 246
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=25.13 E-value=99 Score=23.38 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=25.1
Q ss_pred cccChhhHHHHHHHHhhCCCceEEEEecCCCC
Q 038491 24 YWFDLPQFYKQVKWILKEPTRVIIAWTYTMPE 55 (146)
Q Consensus 24 hw~D~~~~l~e~~RvLk~pgG~la~~~~~~~~ 55 (146)
++.+-+++..-++.+.. .||.+++.+|....
T Consensus 50 ~l~~~~~f~~~L~~~~~-~Gg~I~lHGYtHq~ 80 (243)
T PF10096_consen 50 NLSDNPEFVEYLRYLQA-RGGEIVLHGYTHQY 80 (243)
T ss_pred cchhhHHHHHHHHHHHh-cCCEEEEEecceec
Confidence 35567889999999999 89999999886543
No 247
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=24.78 E-value=1.7e+02 Score=17.70 Aligned_cols=36 Identities=8% Similarity=0.123 Sum_probs=27.7
Q ss_pred eEEEe-ccccChhhHHHHHHHHhhCCCceEEEEecCCC
Q 038491 18 LVTIA-LYWFDLPQFYKQVKWILKEPTRVIIAWTYTMP 54 (146)
Q Consensus 18 lv~~a-~hw~D~~~~l~e~~RvLk~pgG~la~~~~~~~ 54 (146)
+++++ ..|.|.+.....+..+++ .-+.+.++.-+.+
T Consensus 6 Vli~GgR~~~D~~~i~~~Ld~~~~-~~~~~~lvhGga~ 42 (71)
T PF10686_consen 6 VLITGGRDWTDHELIWAALDKVHA-RHPDMVLVHGGAP 42 (71)
T ss_pred EEEEECCccccHHHHHHHHHHHHH-hCCCEEEEECCCC
Confidence 45666 889999999999999999 6666666655543
No 248
>PRK10634 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; Provisional
Probab=24.24 E-value=96 Score=22.53 Aligned_cols=23 Identities=22% Similarity=-0.038 Sum_probs=19.1
Q ss_pred ChhhHHHHHHHHhhCCCceEEEEe
Q 038491 27 DLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 27 D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
+..+.++++..+|+ .||.+++=+
T Consensus 5 ~~~~~i~~a~~~L~-~G~vv~~PT 27 (190)
T PRK10634 5 LQGDAIAAAVDVLN-EERVIAYPT 27 (190)
T ss_pred ccHHHHHHHHHHHH-CCCEEEEeC
Confidence 45678899999999 899998843
No 249
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=24.24 E-value=1.1e+02 Score=18.78 Aligned_cols=21 Identities=14% Similarity=0.047 Sum_probs=17.8
Q ss_pred hhHHHHHHHHhhCCCceEEEEe
Q 038491 29 PQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 29 ~~~l~e~~RvLk~pgG~la~~~ 50 (146)
.+++.++.|.|| .|..+++.-
T Consensus 46 ~~Alr~~~~~lk-~G~~~~itp 66 (74)
T PF04028_consen 46 ARALREMLRALK-EGYSIAITP 66 (74)
T ss_pred HHHHHHHHHHHH-CCCeEEEeC
Confidence 479999999999 888887754
No 250
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=24.13 E-value=62 Score=24.58 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHhhCCCceEEEEe
Q 038491 28 LPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 28 ~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
....+.++.|||+ ++|.+.+..
T Consensus 78 ~~~~~~~~~rvl~-~~~~~~v~~ 99 (302)
T COG0863 78 LLQWLAEQKRVLK-PGGSLYVID 99 (302)
T ss_pred HHHHHHHhhheec-CCCEEEEEC
Confidence 6778899999999 999998864
No 251
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=23.72 E-value=1.6e+02 Score=21.49 Aligned_cols=38 Identities=11% Similarity=-0.031 Sum_probs=21.2
Q ss_pred CCccceEEEe--ccccChhhHHHHHHH--HhhCCCceEEEEec
Q 038491 13 QSSEDLVTIA--LYWFDLPQFYKQVKW--ILKEPTRVIIAWTY 51 (146)
Q Consensus 13 d~s~Dlv~~a--~hw~D~~~~l~e~~R--vLk~pgG~la~~~~ 51 (146)
..+||+|++. ++.--.+..+..+.. +|+ |+|.+++-.+
T Consensus 119 ~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~-~~~iv~ve~~ 160 (199)
T PRK10909 119 GTPHNVVFVDPPFRKGLLEETINLLEDNGWLA-DEALIYVESE 160 (199)
T ss_pred CCCceEEEECCCCCCChHHHHHHHHHHCCCcC-CCcEEEEEec
Confidence 4579999998 543222233333333 256 7777666543
No 252
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=23.58 E-value=2.6e+02 Score=22.16 Aligned_cols=37 Identities=16% Similarity=-0.066 Sum_probs=28.9
Q ss_pred ccceEEEe--ccccChhhHHHHHHHHhhCCCceEEEEecC
Q 038491 15 SEDLVTIA--LYWFDLPQFYKQVKWILKEPTRVIIAWTYT 52 (146)
Q Consensus 15 s~Dlv~~a--~hw~D~~~~l~e~~RvLk~pgG~la~~~~~ 52 (146)
.+|+|+.- -|=--.+--+.++.+.|. |||.+.+.+-.
T Consensus 37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~~-~g~~i~v~g~~ 75 (300)
T COG2813 37 DFDAVLLYWPKHKAEAEFQLAQLLARLP-PGGEIVVVGEK 75 (300)
T ss_pred CCCEEEEEccCchHHHHHHHHHHHhhCC-CCCeEEEEecc
Confidence 57877766 454456778999999999 99999887654
No 253
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=23.52 E-value=1.3e+02 Score=26.54 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=29.7
Q ss_pred ccccccCCCC--CCccceEEEe--c--ccc---ChhhHHHHHHHHhhC--CCceEEEEec
Q 038491 3 ITELEQIVAT--QSSEDLVTIA--L--YWF---DLPQFYKQVKWILKE--PTRVIIAWTY 51 (146)
Q Consensus 3 ~~~~e~l~~~--d~s~Dlv~~a--~--hw~---D~~~~l~e~~RvLk~--pgG~la~~~~ 51 (146)
.+|+.+++.+ .+++|+|++. + .+- +....+.++.+.||. ||+.+++.+.
T Consensus 289 ~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 289 VKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred eCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 3456666544 3589999999 2 232 344455554444441 7888888654
No 254
>PHA02053 hypothetical protein
Probab=23.45 E-value=48 Score=21.81 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=23.2
Q ss_pred cccccCCCCCC----------ccceEEEe---------ccccChhhHHHHHHHHhhCCCc
Q 038491 4 TELEQIVATQS----------SEDLVTIA---------LYWFDLPQFYKQVKWILKEPTR 44 (146)
Q Consensus 4 ~~~e~l~~~d~----------s~Dlv~~a---------~hw~D~~~~l~e~~RvLk~pgG 44 (146)
++.+++|..++ ++|+|.+. +|.+... +-+.+||+ ..|
T Consensus 58 ~sGddmP~D~~ta~~F~kayR~~~VIysr~lGS~DsVmWnLMHlD---k~iw~vl~-eeg 113 (115)
T PHA02053 58 ASGDDMPIDANTATEFQKAYRSWGVIYSRSLGSYDSVMWNLMHLD---KLIWEVLS-EEG 113 (115)
T ss_pred HcCCCCCCCCCCHHHHHHHHHhcCeeeecCCCchhHHHHHHHHHH---HHHHHHHH-Hcc
Confidence 45677887773 67888766 3444444 34567777 555
No 255
>PF09857 DUF2084: Uncharacterized protein conserved in bacteria (DUF2084); InterPro: IPR018654 This domain is found in various hypothetical bacterial proteins that have no known function.
Probab=23.35 E-value=1.1e+02 Score=19.42 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=19.7
Q ss_pred cChhhHHHHHHHHhhCCCceEEEEe
Q 038491 26 FDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 26 ~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
+|..+.=+.+..||. .||.+.+.-
T Consensus 1 MnISk~EQR~LHvLA-qGG~I~~~r 24 (85)
T PF09857_consen 1 MNISKQEQRVLHVLA-QGGRIRHER 24 (85)
T ss_pred CCccHHHHHHHHHHh-cCCeEEEEE
Confidence 467777888999999 899998753
No 256
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=23.17 E-value=1.5e+02 Score=22.70 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=23.8
Q ss_pred CccceEEEeccccChhhHHHHHHHHhhCCCceEEEEe
Q 038491 14 SSEDLVTIALYWFDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 14 ~s~Dlv~~a~hw~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
+.+|+|+-+. .....+.++.+.|+ ++|++..++
T Consensus 235 ~~~d~vld~~---g~~~~~~~~~~~l~-~~G~~v~~g 267 (347)
T cd05278 235 RGVDCVIEAV---GFEETFEQAVKVVR-PGGTIANVG 267 (347)
T ss_pred CCCcEEEEcc---CCHHHHHHHHHHhh-cCCEEEEEc
Confidence 5678777540 11258899999999 999988765
No 257
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=22.16 E-value=1.5e+02 Score=23.50 Aligned_cols=35 Identities=20% Similarity=0.141 Sum_probs=27.6
Q ss_pred ccceEEEeccccChhhHHHHHHHHhhCCCceEEEEecCC
Q 038491 15 SEDLVTIALYWFDLPQFYKQVKWILKEPTRVIIAWTYTM 53 (146)
Q Consensus 15 s~Dlv~~a~hw~D~~~~l~e~~RvLk~pgG~la~~~~~~ 53 (146)
.+|+|+=+.- .+.++.++-+++| |||++++.+...
T Consensus 238 g~D~vie~~G---~~~~~~~ai~~~r-~gG~v~~vGv~~ 272 (350)
T COG1063 238 GADVVIEAVG---SPPALDQALEALR-PGGTVVVVGVYG 272 (350)
T ss_pred CCCEEEECCC---CHHHHHHHHHHhc-CCCEEEEEeccC
Confidence 5888886611 3449999999999 999999987643
No 258
>PF01383 CpcD: CpcD/allophycocyanin linker domain; InterPro: IPR008213 Ferredoxin-NADP(+) oxydoreductase (FNR) (EC=1.18.1.2) transfers electrons from ferredoxin (or flavodoxin) to NADP(+) to generate NADPH. In eucaryotes, the nuclear-encoded, chloroplast-targeted enzyme contains two domains: an FAD-binding domain (see PDOC51384 from PROSITEDOC) and an NADP(+)-binding domain. With the exception of Gloeobacter violaceus PCC 7421, the predicted sequences of all cyanobacterial petH genes, encoding FNR, correspond to a protein containing three domains. Two domains at the C terminus correspond to the FAD- and NADP(+)-binding domains of higher plants FNR protein, which compose the catalytic domains of the enzyme. The N-terminal domain is similar to phycobilisome (PBS)-associated linker proteins from numerous cyanobacteria [, , ] and is associated with: - CpcD, the phycocyanin (PC)-associated, rod-capping, linker polypeptide of PBS. The similarity spans nearly the entire sequence of this linker class. - CpcC, the PC-associated rod linker polypeptide. The similarity is confined only to the C terminus of this linker class. - ApcC, the allophycocyanin (APC)-associated, core linker polypeptide. The similarity only correspond to about half of the molecule. The CpcD-like domain has an elongated shape and consists of a three-stranded beta-sheet, two alpha-helices, one of which has only about one turn, and the connecting random coil segments [].; GO: 0030089 phycobilisome; PDB: 1B33_O.
Probab=21.86 E-value=1.5e+02 Score=17.09 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=19.2
Q ss_pred ccChhhHHHHHHHHhhCCCceEEEE
Q 038491 25 WFDLPQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 25 w~D~~~~l~e~~RvLk~pgG~la~~ 49 (146)
.+..++-.+++.|+.| -||.++-+
T Consensus 30 ~Vpy~~ls~~~q~I~r-~GGkIvsI 53 (56)
T PF01383_consen 30 VVPYSQLSQEMQRINR-QGGKIVSI 53 (56)
T ss_dssp EEEHHHHHHHHHHHHH-CT-EEEEE
T ss_pred EEcHHHhHHHHHHHHH-CCCEEEEE
Confidence 3678889999999999 99998654
No 259
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=21.76 E-value=1e+02 Score=22.20 Aligned_cols=28 Identities=21% Similarity=0.589 Sum_probs=19.6
Q ss_pred ccceEEEe--ccccChhhHHHH-HHHHhhCCC
Q 038491 15 SEDLVTIA--LYWFDLPQFYKQ-VKWILKEPT 43 (146)
Q Consensus 15 s~Dlv~~a--~hw~D~~~~l~e-~~RvLk~pg 43 (146)
..|.|+.. ++|+..+..++. +.||+. +|
T Consensus 55 ~aD~iV~~fP~~w~~~Pa~lK~wiD~V~~-~g 85 (176)
T PRK00871 55 RADLIVWQHPMQWYSIPPLLKLWIDKVLS-HG 85 (176)
T ss_pred hCCEEEEEcChhhccccHHHHHHHHHHhh-CC
Confidence 35667766 788887777776 447877 65
No 260
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.54 E-value=1.8e+02 Score=21.32 Aligned_cols=43 Identities=23% Similarity=0.552 Sum_probs=28.3
Q ss_pred CCCCCccceEEEe--cc----cc---------ChhhHHHHHHHHhhCCCceEEEEecCCC
Q 038491 10 VATQSSEDLVTIA--LY----WF---------DLPQFYKQVKWILKEPTRVIIAWTYTMP 54 (146)
Q Consensus 10 ~~~d~s~Dlv~~a--~h----w~---------D~~~~l~e~~RvLk~pgG~la~~~~~~~ 54 (146)
.+.++..|+|+.. +| |- ++++.+..+..||+ |+ ++.+|....|
T Consensus 45 ll~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp-~~-allIW~tt~P 102 (183)
T cd01842 45 LLEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLP-IE-CLIVWNTAMP 102 (183)
T ss_pred eecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCC-Cc-cEEEEecCCC
Confidence 4678889999988 22 11 34556666677777 66 6667766655
No 261
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.39 E-value=3.2e+02 Score=20.28 Aligned_cols=68 Identities=15% Similarity=0.069 Sum_probs=37.4
Q ss_pred CccceEEEe--c-cccChhhHHHHHHHHhhCCCceEEEEecCCCCCCHHHHHHHHHhhhhccCCCchhhhhhhhhhhc
Q 038491 14 SSEDLVTIA--L-YWFDLPQFYKQVKWILKEPTRVIIAWTYTMPEINESAGVVFKSFDRVDCEPFWKPQRKLLDNKYM 88 (146)
Q Consensus 14 ~s~Dlv~~a--~-hw~D~~~~l~e~~RvLk~pgG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (146)
+.||+|++- + .--=+.+...-++|++| +.-.+.+++. .-+.....+.+......|.+...+.+.|.++
T Consensus 134 ~~fdiivaDPPfL~~eCl~Kts~tik~L~r-~~~kvilCtG------eimee~~s~~l~~~~~sF~PeH~~nLaNeF~ 204 (217)
T KOG3350|consen 134 AHFDIIVADPPFLSEECLAKTSETIKRLQR-NQKKVILCTG------EIMEEWASALLPVLKCSFRPEHERNLANEFR 204 (217)
T ss_pred hcccEEEeCCccccchhhhhhHHHHHHHhc-CCceEEEech------hHhHHHHHHHhhhhhccccchhhccccccee
Confidence 359999887 2 22124677788889999 8877766542 2223334444442333454443333444443
No 262
>PRK13556 azoreductase; Provisional
Probab=21.34 E-value=1.2e+02 Score=21.97 Aligned_cols=18 Identities=17% Similarity=0.604 Sum_probs=7.5
Q ss_pred ccccChhhHHHH-HHHHhh
Q 038491 23 LYWFDLPQFYKQ-VKWILK 40 (146)
Q Consensus 23 ~hw~D~~~~l~e-~~RvLk 40 (146)
+||+..+..|+. +.||++
T Consensus 99 ~yn~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13556 99 LWNFTIPAVLHTYIDYLNR 117 (208)
T ss_pred ccccCCcHHHHHHHHHHhc
Confidence 444444444443 224444
No 263
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=21.31 E-value=1.4e+02 Score=21.01 Aligned_cols=24 Identities=13% Similarity=0.208 Sum_probs=18.0
Q ss_pred ceEEEe---ccccChhhHHHHHHHHhh
Q 038491 17 DLVTIA---LYWFDLPQFYKQVKWILK 40 (146)
Q Consensus 17 Dlv~~a---~hw~D~~~~l~e~~RvLk 40 (146)
|+|.+- .+||++.++-+=+.+.++
T Consensus 22 efv~~Ls~D~~WmspdqAk~li~~A~~ 48 (144)
T PF09999_consen 22 EFVFALSFDRKWMSPDQAKRLIDEAIE 48 (144)
T ss_pred heEeeEeeecCCCCHHHHHHHHHHHHH
Confidence 444444 899999988888887777
No 264
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=21.23 E-value=1.2e+02 Score=21.71 Aligned_cols=31 Identities=19% Similarity=0.064 Sum_probs=21.4
Q ss_pred CCccceEEEe-ccccChhhHHHHHHHHhhCCCceEEEEe
Q 038491 13 QSSEDLVTIA-LYWFDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 13 d~s~Dlv~~a-~hw~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
.+.+|+++|. .+. . .....-|| |||++.+-.
T Consensus 65 ~~~~D~lva~d~~~-----~-~~~~~~l~-~gg~ii~ns 96 (197)
T PRK06274 65 EGQADLLLALEPAE-----V-ARNLHFLK-KGGKIIVNA 96 (197)
T ss_pred CCCCCEEEEcCHHH-----H-HHHHhhcC-CCcEEEEEC
Confidence 5789999987 442 2 23445699 999887653
No 265
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=21.08 E-value=96 Score=24.02 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=16.7
Q ss_pred hhHHHHHHHHhhCCCceEEEE
Q 038491 29 PQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 29 ~~~l~e~~RvLk~pgG~la~~ 49 (146)
.+++.++.+.|+ |||.+++-
T Consensus 218 ~~i~~~a~~~l~-~~g~l~le 237 (280)
T COG2890 218 RRILGEAPDILK-PGGVLILE 237 (280)
T ss_pred HHHHHhhHHHcC-CCcEEEEE
Confidence 457889999999 99998774
No 266
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=20.93 E-value=1.2e+02 Score=19.47 Aligned_cols=26 Identities=8% Similarity=-0.024 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHhhCCCceEEEEecCCC
Q 038491 28 LPQFYKQVKWILKEPTRVIIAWTYTMP 54 (146)
Q Consensus 28 ~~~~l~e~~RvLk~pgG~la~~~~~~~ 54 (146)
.....+++.+.++ .-|.+.+..++.+
T Consensus 13 ~~~~~~~l~~A~~-~~GFf~l~nhGi~ 38 (116)
T PF14226_consen 13 REEVAEQLRDACE-EWGFFYLVNHGIP 38 (116)
T ss_dssp HHHHHHHHHHHHH-HTSEEEEESSSSS
T ss_pred HHHHHHHHHHHHH-hCCEEEEeccccc
Confidence 5678899999999 8999999888765
No 267
>PRK13687 hypothetical protein; Provisional
Probab=20.61 E-value=1.4e+02 Score=19.01 Aligned_cols=24 Identities=8% Similarity=0.026 Sum_probs=19.4
Q ss_pred cChhhHHHHHHHHhhCCCceEEEEe
Q 038491 26 FDLPQFYKQVKWILKEPTRVIIAWT 50 (146)
Q Consensus 26 ~D~~~~l~e~~RvLk~pgG~la~~~ 50 (146)
+|..+.=+.+..||. .||.+.+.-
T Consensus 1 MnISk~EQRvLHvLA-qGGrI~~~r 24 (85)
T PRK13687 1 MNISRQEQRTLHVLA-QGGRIEHER 24 (85)
T ss_pred CCccHHHHHHHHHHh-cCCeEEEEE
Confidence 466777788999999 899988753
No 268
>PRK08441 oorC 2-oxoglutarate-acceptor oxidoreductase subunit OorC; Reviewed
Probab=20.44 E-value=2.1e+02 Score=20.45 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=20.8
Q ss_pred CCCCccceEEEeccccChhhHHHHHHHHhhCCCceEEEE
Q 038491 11 ATQSSEDLVTIALYWFDLPQFYKQVKWILKEPTRVIIAW 49 (146)
Q Consensus 11 ~~d~s~Dlv~~a~hw~D~~~~l~e~~RvLk~pgG~la~~ 49 (146)
.+.+.+|++++- |+... .....-|| |||++.+-
T Consensus 64 ~~~~~~D~lval----~~~~~-~~~~~~l~-~gg~ii~n 96 (183)
T PRK08441 64 ANEGEIDFMLST----AQISY-NQFKSGVK-EGGIIVVE 96 (183)
T ss_pred cCCCCCCEEEEC----CHHHH-HHHHhhcC-CCeEEEEc
Confidence 444678988853 44333 33344589 99998764
No 269
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=20.37 E-value=1.7e+02 Score=21.18 Aligned_cols=37 Identities=8% Similarity=-0.008 Sum_probs=23.4
Q ss_pred CccceEEEe-ccccC------hhhHHHHHHHHhhCCCceEEEEec
Q 038491 14 SSEDLVTIA-LYWFD------LPQFYKQVKWILKEPTRVIIAWTY 51 (146)
Q Consensus 14 ~s~Dlv~~a-~hw~D------~~~~l~e~~RvLk~pgG~la~~~~ 51 (146)
+.||+|+.. +.--+ .+..++.+++-.+ .||-|.+.+-
T Consensus 66 ~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~-~GGgLlmigG 109 (177)
T PF07090_consen 66 NRYDVVILSDVPANSLLKSRRSPNQLELLADYVR-DGGGLLMIGG 109 (177)
T ss_dssp CT-SEEEEES--HHHHHT----HHHHHHHHHHHH-TT-EEEEE-S
T ss_pred hcCCEEEEeCCCchhcccccCCHHHHHHHHHHHH-hCCEEEEEeC
Confidence 579999988 43223 3667888888889 7887777653
No 270
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=20.20 E-value=88 Score=18.91 Aligned_cols=13 Identities=38% Similarity=0.693 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHhh
Q 038491 28 LPQFYKQVKWILK 40 (146)
Q Consensus 28 ~~~~l~e~~RvLk 40 (146)
+..+++|.+||||
T Consensus 11 ~~~~lke~~rvl~ 23 (65)
T COG2443 11 LREFLKEYRRVLK 23 (65)
T ss_pred HHHHHHHHHHHHH
Confidence 4557778888888
Done!