BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038494
(1209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 30/167 (17%)
Query: 256 LTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLLTNDMNS 315
L K R L+ILD++W L+ + I+LT+R K + + M
Sbjct: 232 LRKHPRSLLILDDVWDSWVLKAFD---------------SQCQILLTTRDKSVTDSVMGP 276
Query: 316 QKIFLIE-VLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVANALKNK 374
+ + +E L KE+ L+ V + K + A I+ +C G P+ +S + L++
Sbjct: 277 KYVVPVESSLGKEKGLEILSLFV--NMKKADLPEQAHSIIKECKGSPLVVSLIGALLRD- 333
Query: 375 KLP-VWKDALTQLRNSNPREIHGMDANVCSSIELSYNFLESDEAKSL 420
P W+ L QL+N + I SY++ DEA S+
Sbjct: 334 -FPNRWEYYLKQLQNKQFKRIRKSS---------SYDYEALDEAMSI 370
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 30/167 (17%)
Query: 256 LTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLLTNDMNS 315
L K R L+ILD++W L+ + I+LT+R K + + M
Sbjct: 238 LRKHPRSLLILDDVWDSWVLKAFD---------------SQCQILLTTRDKSVTDSVMGP 282
Query: 316 QKIFLIE-VLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVANALKNK 374
+ + +E L KE+ L+ V + K + A I+ +C G P+ +S + L++
Sbjct: 283 KYVVPVESSLGKEKGLEILSLFV--NMKKADLPEQAHSIIKECKGSPLVVSLIGALLRD- 339
Query: 375 KLP-VWKDALTQLRNSNPREIHGMDANVCSSIELSYNFLESDEAKSL 420
P W+ L QL+N + I SY++ DEA S+
Sbjct: 340 -FPNRWEYYLKQLQNKQFKRIRKSS---------SYDYEALDEAMSI 376
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 38.1 bits (87), Expect = 0.032, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 591 NLQTLCLDWCQLEDV-AAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSL 648
NLQ+L L+W + + A+I L+ L+ L R S + L I L +L+ LDL C++L
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL 242
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 30/167 (17%)
Query: 256 LTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLLTNDMNS 315
L K R L+ILD++W L+ + I+LT+R K + + M
Sbjct: 232 LRKHPRSLLILDDVWDPWVLKAFD---------------NQCQILLTTRDKSVTDSVMGP 276
Query: 316 QKIFLIEV-LSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVANALKNK 374
+ + +E L +E+ L+ V + K A I+ +C G P+ +S + L++
Sbjct: 277 KHVVPVESGLGREKGLEILSLFV--NMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRD- 333
Query: 375 KLP-VWKDALTQLRNSNPREIHGMDANVCSSIELSYNFLESDEAKSL 420
P W L QL+N + I SY++ DEA S+
Sbjct: 334 -FPNRWAYYLRQLQNKQFKRIRKSS---------SYDYEALDEAMSI 370
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.4 bits (85), Expect = 0.047, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 19/153 (12%)
Query: 592 LQTLCLDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVI 651
L L LD C+L + G L L L ++ ++ LPL L L +LD+S + L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 652 APNVISKFSRLEELYM-GDSF-----------PQWDKVEGGSNASLAE-----LKGLSKL 694
+ L+ELY+ G+ P+ +K+ +N +L E L GL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENL 174
Query: 695 TTLEIQVQDAQMLPQDLVFVELPRYRICIGEAW 727
TL +Q +P+ L + G W
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.4 bits (85), Expect = 0.057, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 19/153 (12%)
Query: 592 LQTLCLDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVI 651
L L LD C+L + G L L L ++ ++ LPL L L +LD+S + L +
Sbjct: 58 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 116
Query: 652 APNVISKFSRLEELYM-GDSF-----------PQWDKVEGGSNASLAE-----LKGLSKL 694
+ L+ELY+ G+ P+ +K+ +N +L E L GL L
Sbjct: 117 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENL 175
Query: 695 TTLEIQVQDAQMLPQDLVFVELPRYRICIGEAW 727
TL +Q +P+ L + G W
Sbjct: 176 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 208
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 37.0 bits (84), Expect = 0.070, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 19/153 (12%)
Query: 592 LQTLCLDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVI 651
L L LD C+L + G L L L ++ ++ LPL L L +LD+S + L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 652 APNVISKFSRLEELYM-GDSF-----------PQWDKVEGGSNASLAE-----LKGLSKL 694
+ L+ELY+ G+ P+ +K+ +N L E L GL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-QLTELPAGLLNGLENL 174
Query: 695 TTLEIQVQDAQMLPQDLVFVELPRYRICIGEAW 727
TL +Q +P+ L + G W
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.0 bits (84), Expect = 0.070, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 19/153 (12%)
Query: 592 LQTLCLDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVI 651
L L LD C+L + G L L L ++ ++ LPL L L +LD+S + L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 652 APNVISKFSRLEELYM-GDSF-----------PQWDKVEGGSNASLAE-----LKGLSKL 694
+ L+ELY+ G+ P+ +K+ +N L E L GL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-QLTELPAGLLNGLENL 174
Query: 695 TTLEIQVQDAQMLPQDLVFVELPRYRICIGEAW 727
TL +Q +P+ L + G W
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 37.0 bits (84), Expect = 0.073, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 19/153 (12%)
Query: 592 LQTLCLDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVI 651
L L LD C+L + G L L L ++ ++ LPL L L +LD+S + L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 652 APNVISKFSRLEELYM-GDSF-----------PQWDKVEGGSNASLAE-----LKGLSKL 694
+ L+ELY+ G+ P+ +K+ +N L E L GL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-QLTELPAGLLNGLENL 174
Query: 695 TTLEIQVQDAQMLPQDLVFVELPRYRICIGEAW 727
TL +Q +P+ L + G W
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 37.0 bits (84), Expect = 0.073, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 19/153 (12%)
Query: 592 LQTLCLDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVI 651
L L LD C+L + G L L L ++ ++ LPL L L +LD+S + L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 652 APNVISKFSRLEELYM-GDSF-----------PQWDKVEGGSNASLAE-----LKGLSKL 694
+ L+ELY+ G+ P+ +K+ +N L E L GL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-QLTELPAGLLNGLENL 174
Query: 695 TTLEIQVQDAQMLPQDLVFVELPRYRICIGEAW 727
TL +Q +P+ L + G W
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 37.0 bits (84), Expect = 0.074, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 19/153 (12%)
Query: 592 LQTLCLDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVI 651
L L LD C+L + G L L L ++ ++ LPL L L +LD+S + L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 652 APNVISKFSRLEELYM-GDSF-----------PQWDKVEGGSNASLAE-----LKGLSKL 694
+ L+ELY+ G+ P+ +K+ +N L E L GL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-DLTELPAGLLNGLENL 174
Query: 695 TTLEIQVQDAQMLPQDLVFVELPRYRICIGEAW 727
TL +Q +P+ L + G W
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 30/167 (17%)
Query: 256 LTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLLTNDMNS 315
L K R L+ILD++W L+ + I+LT+ K + + M
Sbjct: 239 LRKHPRSLLILDDVWDPWVLKAFD---------------NQCQILLTTSDKSVTDSVMGP 283
Query: 316 QKIFLIEV-LSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVANALKNK 374
+ + +E L +E+ L+ V + K A I+ +C G P+ +S + L++
Sbjct: 284 KHVVPVESGLGREKGLEILSLFV--NMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRD- 340
Query: 375 KLP-VWKDALTQLRNSNPREIHGMDANVCSSIELSYNFLESDEAKSL 420
P W L QL+N + I SY++ DEA S+
Sbjct: 341 -FPNRWAYYLRQLQNKQFKRIRKSS---------SYDYEALDEAMSI 377
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.5 bits (75), Expect = 0.75, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 19/153 (12%)
Query: 592 LQTLCLDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVI 651
L L LD +L + G L L L ++ ++ LPL L L +LD+S + L +
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 652 APNVISKFSRLEELYM-GDSF-----------PQWDKVEGGSNASLAE-----LKGLSKL 694
+ L+ELY+ G+ P+ +K+ +N +L E L GL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENL 174
Query: 695 TTLEIQVQDAQMLPQDLVFVELPRYRICIGEAW 727
TL +Q +P+ L + G W
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.5 bits (75), Expect = 0.77, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 19/153 (12%)
Query: 592 LQTLCLDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVI 651
L L LD +L + G L L L ++ ++ LPL L L +LD+S + L +
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 652 APNVISKFSRLEELYM-GDSF-----------PQWDKVEGGSNASLAE-----LKGLSKL 694
+ L+ELY+ G+ P+ +K+ +N +L E L GL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENL 174
Query: 695 TTLEIQVQDAQMLPQDLVFVELPRYRICIGEAW 727
TL +Q +P+ L + G W
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.5 bits (75), Expect = 0.81, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 19/153 (12%)
Query: 592 LQTLCLDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVI 651
L L LD +L + G L L L ++ ++ LPL L L +LD+S + L +
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 652 APNVISKFSRLEELYM-GDSF-----------PQWDKVEGGSNASLAE-----LKGLSKL 694
+ L+ELY+ G+ P+ +K+ +N +L E L GL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENL 174
Query: 695 TTLEIQVQDAQMLPQDLVFVELPRYRICIGEAW 727
TL +Q +P+ L + G W
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 143 HRPAPESTEHMQAKDFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAK 202
HRPAPE E A E ++ +K+ + + K IG+ G GVGKT L++++
Sbjct: 112 HRPAPEFEELSTAD--EILETGIKVIDLLAPYAKGGK---IGLFGGAGVGKTVLIQELIN 166
Query: 203 QVMED 207
V ++
Sbjct: 167 NVAQE 171
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 143 HRPAPESTEHMQAKDFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAK 202
HRPAP+ E A + E ++ +K+ + ++ K IG+ G GVGKT L++++
Sbjct: 119 HRPAPKFEE--LATEVEILETGIKVVDLLAPYIKGGK---IGLFGGAGVGKTVLIQELIH 173
Query: 203 QVMED 207
+ ++
Sbjct: 174 NIAQE 178
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 178 DKLNIIGVHGMGGVGKTTLVKQIA 201
+K N++ HG G+GKTTL+K I+
Sbjct: 33 EKGNVVNFHGPNGIGKTTLLKTIS 56
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 608 IGQLKKLEILSFRYSDIK-QLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEEL 665
IG + L IL+ ++DI +P E+G L L +LDLS+ + L P +S + L E+
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEI 706
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 608 IGQLKKLEILSFRYSDIK-QLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEEL 665
IG + L IL+ ++DI +P E+G L L +LDLS+ + L P +S + L E+
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEI 709
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,707,861
Number of Sequences: 62578
Number of extensions: 1241044
Number of successful extensions: 3387
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3378
Number of HSP's gapped (non-prelim): 30
length of query: 1209
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1099
effective length of database: 8,089,757
effective search space: 8890642943
effective search space used: 8890642943
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)