Query 038494
Match_columns 1209
No_of_seqs 455 out of 5340
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 11:37:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.9E-78 4.2E-83 737.0 46.7 595 35-644 19-651 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.5E-57 9.7E-62 585.2 52.4 688 157-993 182-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.9E-38 6.2E-43 352.2 17.5 274 164-448 1-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 4.1E-28 8.8E-33 317.3 26.1 511 519-1145 69-589 (968)
5 PLN00113 leucine-rich repeat r 99.9 8.1E-27 1.8E-31 305.1 23.9 516 541-1173 69-590 (968)
6 PLN03210 Resistant to P. syrin 99.8 4.7E-20 1E-24 240.4 21.7 380 556-1169 547-945 (1153)
7 KOG4194 Membrane glycoprotein 99.8 2.2E-20 4.8E-25 203.3 9.2 154 515-671 48-208 (873)
8 KOG0472 Leucine-rich repeat pr 99.7 3.3E-20 7.1E-25 193.4 -9.4 110 1034-1165 430-539 (565)
9 KOG0444 Cytoskeletal regulator 99.7 1.3E-19 2.7E-24 198.2 -5.4 184 517-709 53-239 (1255)
10 KOG0472 Leucine-rich repeat pr 99.7 1.7E-20 3.8E-25 195.5 -14.9 174 521-708 47-222 (565)
11 KOG0618 Serine/threonine phosp 99.7 4.7E-19 1E-23 204.1 -5.0 468 527-1106 6-489 (1081)
12 KOG4194 Membrane glycoprotein 99.7 2.9E-17 6.2E-22 179.4 4.8 338 517-880 100-447 (873)
13 KOG0444 Cytoskeletal regulator 99.6 9.4E-18 2E-22 183.8 -2.5 124 545-671 11-137 (1255)
14 KOG0618 Serine/threonine phosp 99.6 2.2E-17 4.7E-22 190.6 -2.3 99 569-669 23-123 (1081)
15 KOG0617 Ras suppressor protein 99.4 1E-14 2.2E-19 134.9 -5.6 166 531-710 23-191 (264)
16 PRK04841 transcriptional regul 99.4 1.7E-11 3.7E-16 160.2 21.7 297 155-496 10-333 (903)
17 COG2909 MalT ATP-dependent tra 99.3 3.4E-10 7.4E-15 131.9 21.7 296 155-498 15-341 (894)
18 KOG4341 F-box protein containi 99.2 4.3E-13 9.3E-18 142.3 -5.1 299 790-1169 139-441 (483)
19 PRK00411 cdc6 cell division co 99.2 1.8E-09 4E-14 126.0 23.5 293 158-474 29-357 (394)
20 KOG0617 Ras suppressor protein 99.2 6.9E-13 1.5E-17 122.8 -4.8 149 518-671 32-184 (264)
21 KOG4237 Extracellular matrix p 99.2 6.1E-12 1.3E-16 132.4 0.7 291 530-882 57-356 (498)
22 PRK15387 E3 ubiquitin-protein 99.1 6.7E-10 1.5E-14 134.4 17.0 157 520-709 202-359 (788)
23 KOG4341 F-box protein containi 99.1 3.8E-12 8.3E-17 135.2 -3.1 272 846-1168 138-415 (483)
24 PF01637 Arch_ATPase: Archaeal 99.1 3.2E-10 6.9E-15 122.4 10.6 198 161-366 1-233 (234)
25 TIGR03015 pepcterm_ATPase puta 99.1 2E-08 4.2E-13 110.7 23.8 197 178-386 41-266 (269)
26 PRK15387 E3 ubiquitin-protein 99.1 3.6E-10 7.8E-15 136.7 10.6 71 789-882 222-292 (788)
27 TIGR02928 orc1/cdc6 family rep 99.1 1.8E-08 4E-13 116.4 24.2 301 158-474 14-349 (365)
28 PRK15370 E3 ubiquitin-protein 99.0 2E-09 4.4E-14 131.3 12.7 136 519-670 178-314 (754)
29 KOG4658 Apoptotic ATPase [Sign 99.0 3.5E-10 7.6E-15 140.1 5.4 296 520-882 546-856 (889)
30 TIGR00635 ruvB Holliday juncti 99.0 1.3E-08 2.8E-13 114.2 17.1 265 158-475 3-289 (305)
31 PF05729 NACHT: NACHT domain 99.0 3.1E-09 6.6E-14 107.7 11.0 145 181-337 1-163 (166)
32 PRK00080 ruvB Holliday junctio 98.9 4.1E-08 8.8E-13 110.7 19.0 275 156-475 22-310 (328)
33 PRK15370 E3 ubiquitin-protein 98.9 5.8E-09 1.3E-13 127.4 11.8 177 517-721 197-374 (754)
34 COG2256 MGS1 ATPase related to 98.7 1.6E-07 3.4E-12 101.0 14.2 179 150-364 15-209 (436)
35 PF14580 LRR_9: Leucine-rich r 98.7 1.2E-08 2.5E-13 100.9 4.7 104 565-670 17-123 (175)
36 PRK13342 recombination factor 98.7 1.5E-07 3.3E-12 109.4 14.6 181 155-371 8-200 (413)
37 PTZ00112 origin recognition co 98.7 7.4E-07 1.6E-11 105.3 20.0 207 158-371 754-986 (1164)
38 PF14580 LRR_9: Leucine-rich r 98.7 1.9E-08 4.1E-13 99.5 5.0 131 532-667 10-147 (175)
39 COG3899 Predicted ATPase [Gene 98.6 6.1E-07 1.3E-11 112.2 16.5 311 161-498 2-389 (849)
40 PRK06893 DNA replication initi 98.6 3.6E-07 7.7E-12 96.9 12.2 155 178-369 37-205 (229)
41 PRK07003 DNA polymerase III su 98.5 5.7E-06 1.2E-10 97.9 21.2 181 157-368 14-222 (830)
42 KOG1259 Nischarin, modulator o 98.5 1.5E-08 3.2E-13 103.1 -0.6 134 565-708 282-415 (490)
43 KOG4237 Extracellular matrix p 98.5 1.1E-08 2.5E-13 108.2 -1.7 123 515-639 63-192 (498)
44 cd00116 LRR_RI Leucine-rich re 98.5 9.9E-08 2.1E-12 108.5 4.6 135 563-702 19-175 (319)
45 PRK12402 replication factor C 98.5 2.4E-06 5.1E-11 97.8 15.6 200 158-367 14-226 (337)
46 PRK14949 DNA polymerase III su 98.4 2.5E-06 5.5E-11 102.9 15.6 180 157-367 14-220 (944)
47 PRK14960 DNA polymerase III su 98.4 1.5E-05 3.2E-10 93.5 21.5 180 156-366 12-218 (702)
48 PLN03025 replication factor C 98.4 1.7E-06 3.7E-11 97.1 13.3 185 155-364 9-197 (319)
49 PRK14963 DNA polymerase III su 98.4 3.7E-05 7.9E-10 90.5 24.3 191 157-365 12-215 (504)
50 TIGR03420 DnaA_homol_Hda DnaA 98.4 2.3E-06 4.9E-11 91.5 12.9 176 158-369 14-203 (226)
51 KOG0532 Leucine-rich repeat (L 98.4 1.4E-08 3E-13 112.6 -4.3 124 540-670 120-244 (722)
52 cd00116 LRR_RI Leucine-rich re 98.4 1.4E-07 3E-12 107.3 3.4 263 571-883 2-289 (319)
53 KOG1259 Nischarin, modulator o 98.4 3.8E-08 8.2E-13 100.1 -1.0 123 518-644 283-408 (490)
54 PRK12323 DNA polymerase III su 98.4 3.1E-06 6.7E-11 98.8 14.3 197 157-367 14-225 (700)
55 PRK14961 DNA polymerase III su 98.4 5E-06 1.1E-10 94.8 15.9 195 157-367 14-220 (363)
56 COG3903 Predicted ATPase [Gene 98.4 5.5E-07 1.2E-11 97.8 7.0 291 180-497 14-316 (414)
57 PRK14957 DNA polymerase III su 98.4 7E-06 1.5E-10 96.4 16.7 181 156-367 13-221 (546)
58 PRK14956 DNA polymerase III su 98.4 3.5E-06 7.6E-11 96.0 13.6 193 156-364 15-219 (484)
59 PF13401 AAA_22: AAA domain; P 98.4 1.5E-06 3.2E-11 83.9 8.9 94 179-272 3-99 (131)
60 PF13173 AAA_14: AAA domain 98.3 1.2E-06 2.6E-11 83.6 7.9 120 180-328 2-126 (128)
61 KOG0532 Leucine-rich repeat (L 98.3 2.5E-08 5.4E-13 110.6 -4.5 177 521-713 77-255 (722)
62 PRK06645 DNA polymerase III su 98.3 1.1E-05 2.3E-10 94.3 16.8 195 157-364 19-226 (507)
63 PRK07994 DNA polymerase III su 98.3 3.9E-05 8.4E-10 91.7 21.6 196 157-368 14-221 (647)
64 PRK05564 DNA polymerase III su 98.3 1.3E-05 2.8E-10 89.8 16.5 177 158-365 3-188 (313)
65 PRK00440 rfc replication facto 98.3 1.3E-05 2.7E-10 91.0 16.6 185 156-367 14-203 (319)
66 COG1474 CDC6 Cdc6-related prot 98.3 5.4E-05 1.2E-09 85.2 21.0 202 159-367 17-238 (366)
67 PRK14962 DNA polymerase III su 98.3 1.2E-05 2.6E-10 93.7 16.0 184 156-370 11-222 (472)
68 PRK09112 DNA polymerase III su 98.3 1.7E-05 3.8E-10 88.8 16.7 198 156-367 20-240 (351)
69 PRK07471 DNA polymerase III su 98.3 1.2E-05 2.7E-10 90.5 14.5 195 157-367 17-238 (365)
70 PF05621 TniB: Bacterial TniB 98.3 3.9E-05 8.5E-10 81.5 17.2 192 164-367 42-261 (302)
71 KOG2028 ATPase related to the 98.2 4.5E-06 9.7E-11 87.8 9.8 177 154-361 133-330 (554)
72 PF05496 RuvB_N: Holliday junc 98.2 4.9E-05 1.1E-09 76.8 16.7 184 154-367 19-221 (233)
73 PRK05896 DNA polymerase III su 98.2 1.2E-05 2.7E-10 94.3 14.4 192 156-363 13-216 (605)
74 PRK13341 recombination factor 98.2 9.4E-06 2E-10 99.1 13.9 173 155-362 24-212 (725)
75 PRK08691 DNA polymerase III su 98.2 1.3E-05 2.8E-10 94.9 14.5 180 157-367 14-220 (709)
76 KOG3207 Beta-tubulin folding c 98.2 3.5E-07 7.7E-12 98.7 1.3 189 518-709 120-318 (505)
77 cd00009 AAA The AAA+ (ATPases 98.2 7.7E-06 1.7E-10 80.9 10.7 59 162-222 1-59 (151)
78 TIGR00678 holB DNA polymerase 98.2 1.9E-05 4.2E-10 81.3 13.8 155 170-362 3-186 (188)
79 PRK14959 DNA polymerase III su 98.2 0.00011 2.3E-09 87.1 21.1 200 156-371 13-225 (624)
80 PTZ00202 tuzin; Provisional 98.2 1.7E-05 3.6E-10 87.3 13.3 164 155-337 258-434 (550)
81 PRK07940 DNA polymerase III su 98.2 3.1E-05 6.8E-10 88.0 16.0 188 158-367 4-213 (394)
82 cd01128 rho_factor Transcripti 98.2 2.9E-06 6.2E-11 89.9 7.1 93 179-272 15-115 (249)
83 PRK04195 replication factor C 98.2 2.3E-05 5E-10 93.2 15.6 186 155-372 10-207 (482)
84 PRK14964 DNA polymerase III su 98.2 2.5E-05 5.5E-10 90.4 15.3 177 157-364 11-214 (491)
85 PF13191 AAA_16: AAA ATPase do 98.2 2.1E-06 4.6E-11 88.6 5.8 48 160-207 1-51 (185)
86 TIGR02397 dnaX_nterm DNA polym 98.2 3.3E-05 7.2E-10 89.0 16.2 182 156-369 11-220 (355)
87 TIGR02903 spore_lon_C ATP-depe 98.2 3.2E-05 6.8E-10 93.8 16.5 203 158-370 153-398 (615)
88 PRK14955 DNA polymerase III su 98.2 1.8E-05 3.9E-10 91.4 13.7 201 157-366 14-227 (397)
89 PRK14951 DNA polymerase III su 98.1 2.7E-05 5.9E-10 92.8 15.1 196 157-366 14-224 (618)
90 TIGR01242 26Sp45 26S proteasom 98.1 6.4E-05 1.4E-09 86.2 17.7 176 157-361 120-328 (364)
91 KOG2227 Pre-initiation complex 98.1 0.00021 4.6E-09 78.7 20.3 208 158-372 149-373 (529)
92 PRK08084 DNA replication initi 98.1 3.9E-05 8.3E-10 81.7 14.5 175 159-369 22-211 (235)
93 PRK07764 DNA polymerase III su 98.1 0.00026 5.6E-09 87.8 23.5 179 157-366 13-220 (824)
94 PRK08727 hypothetical protein; 98.1 2.6E-05 5.7E-10 82.9 13.1 171 158-364 18-201 (233)
95 PRK14952 DNA polymerase III su 98.1 0.00043 9.4E-09 82.5 24.2 196 157-369 11-222 (584)
96 PRK09087 hypothetical protein; 98.1 6E-05 1.3E-09 79.3 14.9 146 179-369 43-197 (226)
97 COG4886 Leucine-rich repeat (L 98.1 3.2E-06 6.8E-11 99.0 5.8 77 568-644 141-218 (394)
98 PRK14958 DNA polymerase III su 98.1 3.2E-05 6.9E-10 91.2 13.9 179 157-366 14-219 (509)
99 PRK14969 DNA polymerase III su 98.1 2.9E-05 6.3E-10 92.2 13.6 177 157-364 14-217 (527)
100 PRK09111 DNA polymerase III su 98.1 5.5E-05 1.2E-09 90.6 15.6 200 156-368 21-234 (598)
101 PF13855 LRR_8: Leucine rich r 98.1 3.3E-06 7.2E-11 68.3 3.7 57 542-600 2-59 (61)
102 PRK09376 rho transcription ter 98.1 1.2E-05 2.5E-10 88.4 9.1 101 171-272 159-268 (416)
103 PF13855 LRR_8: Leucine rich r 98.1 4.5E-06 9.8E-11 67.5 4.3 58 567-624 1-61 (61)
104 COG4886 Leucine-rich repeat (L 98.0 5.3E-06 1.1E-10 97.1 6.3 174 519-707 116-292 (394)
105 PRK14954 DNA polymerase III su 98.0 0.0001 2.2E-09 88.4 16.5 198 156-362 13-223 (620)
106 PRK06305 DNA polymerase III su 98.0 0.00015 3.2E-09 84.7 16.6 177 156-364 14-219 (451)
107 PRK07133 DNA polymerase III su 98.0 0.00011 2.5E-09 88.2 15.9 191 157-366 16-218 (725)
108 PRK14970 DNA polymerase III su 98.0 0.00015 3.3E-09 83.5 16.5 178 157-365 15-207 (367)
109 PRK14971 DNA polymerase III su 98.0 0.00014 3E-09 87.9 16.5 178 157-366 15-221 (614)
110 KOG3207 Beta-tubulin folding c 98.0 1.8E-06 3.9E-11 93.4 0.2 180 516-704 143-338 (505)
111 PRK14948 DNA polymerase III su 98.0 0.001 2.2E-08 80.5 23.6 199 156-368 13-223 (620)
112 KOG0989 Replication factor C, 98.0 4.4E-05 9.5E-10 79.4 10.1 186 154-361 31-224 (346)
113 PRK15386 type III secretion pr 98.0 2.3E-05 5E-10 87.2 8.7 50 918-985 71-120 (426)
114 PRK08451 DNA polymerase III su 97.9 0.00018 3.9E-09 84.2 16.5 181 157-368 12-219 (535)
115 PRK03992 proteasome-activating 97.9 0.00016 3.4E-09 83.2 15.6 178 157-360 129-336 (389)
116 PRK14953 DNA polymerase III su 97.9 0.00021 4.6E-09 83.9 16.6 181 157-368 14-221 (486)
117 TIGR00767 rho transcription te 97.9 2.7E-05 5.9E-10 86.2 8.2 94 178-272 166-267 (415)
118 PRK08903 DnaA regulatory inact 97.9 9.8E-05 2.1E-09 78.7 12.3 175 158-372 17-204 (227)
119 PF14516 AAA_35: AAA-like doma 97.9 0.00068 1.5E-08 76.2 19.3 211 156-374 8-246 (331)
120 PRK07399 DNA polymerase III su 97.9 0.00032 6.9E-09 77.6 15.8 199 158-368 3-222 (314)
121 PF12799 LRR_4: Leucine Rich r 97.9 2.1E-05 4.6E-10 57.9 4.4 42 567-608 1-42 (44)
122 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00018 3.9E-09 90.5 15.2 159 156-337 184-363 (852)
123 PF00308 Bac_DnaA: Bacterial d 97.8 0.00011 2.3E-09 77.2 11.1 163 180-367 34-208 (219)
124 TIGR03689 pup_AAA proteasome A 97.8 0.00044 9.6E-09 80.6 16.4 163 156-338 179-379 (512)
125 PRK14950 DNA polymerase III su 97.8 0.00029 6.4E-09 85.5 15.7 198 157-369 14-223 (585)
126 PHA02544 44 clamp loader, smal 97.8 0.00016 3.5E-09 81.6 12.7 149 155-335 17-171 (316)
127 PRK05642 DNA replication initi 97.8 0.00028 6E-09 75.1 13.6 153 181-369 46-210 (234)
128 PRK06647 DNA polymerase III su 97.8 0.00043 9.4E-09 82.6 16.5 196 156-367 13-220 (563)
129 KOG2543 Origin recognition com 97.8 0.00025 5.4E-09 76.2 12.6 170 159-336 6-192 (438)
130 KOG1859 Leucine-rich repeat pr 97.8 3E-07 6.5E-12 104.7 -9.7 175 518-704 108-291 (1096)
131 TIGR02639 ClpA ATP-dependent C 97.8 0.00018 4E-09 89.9 13.7 157 157-337 180-358 (731)
132 PRK11331 5-methylcytosine-spec 97.8 9E-05 1.9E-09 83.6 9.6 109 159-273 175-285 (459)
133 PLN03150 hypothetical protein; 97.8 5E-05 1.1E-09 93.1 8.4 102 568-670 419-525 (623)
134 PRK14087 dnaA chromosomal repl 97.8 0.0002 4.3E-09 83.6 12.5 168 181-370 142-322 (450)
135 KOG2120 SCF ubiquitin ligase, 97.7 3.6E-06 7.7E-11 86.3 -1.8 41 845-885 233-273 (419)
136 PTZ00361 26 proteosome regulat 97.7 0.00032 6.9E-09 80.6 13.6 179 156-360 180-388 (438)
137 PLN03150 hypothetical protein; 97.7 6.9E-05 1.5E-09 91.9 8.8 104 542-647 419-527 (623)
138 CHL00095 clpC Clp protease ATP 97.7 0.00021 4.5E-09 90.6 13.1 157 158-336 178-353 (821)
139 PRK05563 DNA polymerase III su 97.7 0.0006 1.3E-08 81.9 16.3 193 157-365 14-218 (559)
140 PRK15386 type III secretion pr 97.7 4.6E-05 9.9E-10 84.9 6.1 119 817-990 51-169 (426)
141 KOG2120 SCF ubiquitin ligase, 97.7 2.2E-06 4.8E-11 87.8 -4.3 186 847-1104 186-374 (419)
142 COG1222 RPT1 ATP-dependent 26S 97.7 0.002 4.4E-08 68.9 17.2 199 158-387 150-393 (406)
143 PRK14965 DNA polymerase III su 97.6 0.00054 1.2E-08 82.7 14.1 195 157-367 14-221 (576)
144 PRK05707 DNA polymerase III su 97.6 0.001 2.2E-08 74.1 15.1 156 180-367 22-203 (328)
145 PTZ00454 26S protease regulato 97.6 0.0012 2.5E-08 75.5 16.0 177 156-361 142-351 (398)
146 COG2255 RuvB Holliday junction 97.6 0.02 4.4E-07 59.6 22.8 183 155-367 22-223 (332)
147 TIGR02881 spore_V_K stage V sp 97.6 0.0006 1.3E-08 74.2 12.0 47 159-205 6-67 (261)
148 KOG1947 Leucine rich repeat pr 97.5 1E-05 2.2E-10 98.1 -2.4 122 845-991 187-309 (482)
149 KOG1947 Leucine rich repeat pr 97.5 2E-05 4.3E-10 95.5 -0.5 121 761-885 187-308 (482)
150 TIGR02880 cbbX_cfxQ probable R 97.5 0.001 2.2E-08 72.9 12.8 132 182-338 60-209 (284)
151 CHL00181 cbbX CbbX; Provisiona 97.5 0.0013 2.8E-08 72.0 13.5 133 181-338 60-210 (287)
152 TIGR00362 DnaA chromosomal rep 97.5 0.00074 1.6E-08 78.8 12.3 160 181-365 137-308 (405)
153 TIGR01241 FtsH_fam ATP-depende 97.5 0.004 8.6E-08 74.6 18.7 183 156-367 52-267 (495)
154 PF05673 DUF815: Protein of un 97.5 0.0037 8E-08 64.5 15.3 54 154-207 22-79 (249)
155 PRK00149 dnaA chromosomal repl 97.4 0.00093 2E-08 79.0 12.3 161 180-365 148-320 (450)
156 PRK10865 protein disaggregatio 97.4 0.0009 1.9E-08 84.7 12.8 158 157-337 176-354 (857)
157 KOG3665 ZYG-1-like serine/thre 97.4 9.4E-05 2E-09 90.1 3.9 126 517-644 120-259 (699)
158 KOG3665 ZYG-1-like serine/thre 97.4 9.4E-05 2E-09 90.1 3.8 132 540-671 121-261 (699)
159 PRK14088 dnaA chromosomal repl 97.4 0.0012 2.5E-08 77.2 12.6 163 180-366 130-304 (440)
160 TIGR03346 chaperone_ClpB ATP-d 97.4 0.0018 4E-08 82.4 15.4 158 157-337 171-349 (852)
161 PRK08769 DNA polymerase III su 97.4 0.0046 1E-07 68.2 16.1 173 166-367 11-208 (319)
162 PF12799 LRR_4: Leucine Rich r 97.4 0.00025 5.5E-09 52.3 4.2 37 591-627 2-39 (44)
163 KOG1909 Ran GTPase-activating 97.4 3.7E-05 8E-10 81.3 -0.5 38 608-645 88-130 (382)
164 PRK11034 clpA ATP-dependent Cl 97.4 0.0002 4.3E-09 88.1 5.6 158 158-337 185-362 (758)
165 PRK08058 DNA polymerase III su 97.3 0.0028 6.1E-08 71.2 14.2 163 159-336 5-181 (329)
166 TIGR00763 lon ATP-dependent pr 97.3 0.011 2.4E-07 74.6 20.8 48 159-206 320-373 (775)
167 PRK06620 hypothetical protein; 97.3 0.00062 1.3E-08 71.0 8.0 137 181-365 45-187 (214)
168 PRK08181 transposase; Validate 97.3 0.0025 5.3E-08 68.6 12.7 82 170-272 98-179 (269)
169 CHL00176 ftsH cell division pr 97.3 0.0034 7.4E-08 76.1 15.3 173 158-359 182-386 (638)
170 COG3267 ExeA Type II secretory 97.3 0.016 3.4E-07 59.7 17.4 190 168-369 40-247 (269)
171 PRK14086 dnaA chromosomal repl 97.3 0.0025 5.4E-08 75.4 13.4 159 181-364 315-485 (617)
172 PRK06871 DNA polymerase III su 97.3 0.0063 1.4E-07 67.2 15.9 176 168-364 11-200 (325)
173 TIGR00602 rad24 checkpoint pro 97.2 0.001 2.3E-08 79.7 9.9 53 153-205 78-135 (637)
174 KOG1859 Leucine-rich repeat pr 97.2 9.1E-06 2E-10 93.1 -7.0 122 518-644 163-288 (1096)
175 PRK10536 hypothetical protein; 97.2 0.0043 9.2E-08 65.0 12.9 57 158-216 54-110 (262)
176 COG1373 Predicted ATPase (AAA+ 97.2 0.0034 7.3E-08 72.2 13.2 166 163-367 21-192 (398)
177 PRK06090 DNA polymerase III su 97.2 0.016 3.4E-07 64.0 17.6 164 167-367 11-201 (319)
178 PRK12422 chromosomal replicati 97.2 0.0029 6.3E-08 73.6 12.6 154 181-361 142-307 (445)
179 KOG0531 Protein phosphatase 1, 97.2 5E-05 1.1E-09 88.9 -2.1 80 564-644 115-195 (414)
180 PF00004 AAA: ATPase family as 97.2 0.00074 1.6E-08 65.0 6.2 69 183-272 1-70 (132)
181 COG0593 DnaA ATPase involved i 97.1 0.013 2.8E-07 65.9 16.0 135 179-338 112-258 (408)
182 KOG0731 AAA+-type ATPase conta 97.1 0.01 2.2E-07 71.2 16.0 185 159-367 311-524 (774)
183 KOG2982 Uncharacterized conser 97.1 0.00011 2.4E-09 75.6 -0.2 81 564-644 68-155 (418)
184 KOG0991 Replication factor C, 97.1 0.0016 3.4E-08 64.9 7.4 103 155-272 23-125 (333)
185 COG2812 DnaX DNA polymerase II 97.1 0.031 6.7E-07 65.0 19.0 189 158-362 15-215 (515)
186 KOG0733 Nuclear AAA ATPase (VC 97.1 0.012 2.6E-07 67.3 15.0 133 180-339 545-694 (802)
187 PRK12608 transcription termina 97.0 0.005 1.1E-07 68.2 11.9 103 169-272 121-232 (380)
188 KOG0730 AAA+-type ATPase [Post 97.0 0.016 3.5E-07 67.3 16.2 161 154-339 429-617 (693)
189 PRK10787 DNA-binding ATP-depen 97.0 0.02 4.4E-07 71.5 18.6 166 159-337 322-506 (784)
190 CHL00195 ycf46 Ycf46; Provisio 97.0 0.0063 1.4E-07 71.3 13.3 179 158-360 227-428 (489)
191 PRK07993 DNA polymerase III su 97.0 0.012 2.7E-07 65.7 15.1 176 168-364 11-201 (334)
192 COG1223 Predicted ATPase (AAA+ 97.0 0.0055 1.2E-07 62.3 10.6 174 158-360 120-318 (368)
193 PRK08116 hypothetical protein; 97.0 0.002 4.3E-08 69.8 8.3 103 181-306 115-221 (268)
194 PF13177 DNA_pol3_delta2: DNA 97.0 0.003 6.6E-08 62.7 8.9 133 163-325 1-162 (162)
195 smart00382 AAA ATPases associa 97.0 0.0022 4.8E-08 62.6 7.9 90 181-274 3-92 (148)
196 PF10443 RNA12: RNA12 protein; 97.0 0.044 9.5E-07 61.5 18.4 203 164-384 1-297 (431)
197 KOG1644 U2-associated snRNP A' 97.0 0.0014 3E-08 64.3 5.9 101 541-645 42-150 (233)
198 KOG0531 Protein phosphatase 1, 97.0 0.00027 5.9E-09 82.8 1.4 106 563-671 91-197 (414)
199 KOG2004 Mitochondrial ATP-depe 96.9 0.025 5.4E-07 66.1 16.3 99 159-272 411-517 (906)
200 KOG1644 U2-associated snRNP A' 96.9 0.0018 3.8E-08 63.6 6.1 102 566-669 41-149 (233)
201 PHA00729 NTP-binding motif con 96.9 0.0053 1.2E-07 63.2 9.7 36 170-205 7-42 (226)
202 KOG0736 Peroxisome assembly fa 96.9 0.018 3.8E-07 67.9 14.7 98 154-272 667-776 (953)
203 TIGR01243 CDC48 AAA family ATP 96.9 0.012 2.5E-07 74.3 14.8 176 157-361 451-657 (733)
204 TIGR02639 ClpA ATP-dependent C 96.9 0.014 3E-07 73.3 15.3 102 160-272 455-565 (731)
205 PRK08118 topology modulation p 96.9 0.00065 1.4E-08 67.9 2.8 36 181-216 2-38 (167)
206 PRK06964 DNA polymerase III su 96.8 0.02 4.3E-07 63.8 14.4 105 246-367 114-225 (342)
207 KOG0733 Nuclear AAA ATPase (VC 96.8 0.032 6.9E-07 64.0 15.5 94 158-272 189-294 (802)
208 COG0466 Lon ATP-dependent Lon 96.8 0.011 2.3E-07 69.4 12.2 163 160-337 324-508 (782)
209 KOG1514 Origin recognition com 96.7 0.047 1E-06 64.0 16.6 168 160-338 397-590 (767)
210 TIGR02640 gas_vesic_GvpN gas v 96.7 0.023 5.1E-07 61.6 13.3 57 166-229 9-65 (262)
211 KOG2982 Uncharacterized conser 96.6 0.001 2.3E-08 68.7 2.0 66 788-860 198-263 (418)
212 KOG0728 26S proteasome regulat 96.6 0.045 9.7E-07 55.3 13.2 155 160-338 148-332 (404)
213 TIGR02237 recomb_radB DNA repa 96.6 0.01 2.2E-07 62.3 9.5 88 180-271 12-108 (209)
214 TIGR03345 VI_ClpV1 type VI sec 96.6 0.013 2.9E-07 74.1 12.0 106 159-272 566-680 (852)
215 PF04665 Pox_A32: Poxvirus A32 96.6 0.0061 1.3E-07 63.6 7.4 37 181-219 14-50 (241)
216 TIGR01243 CDC48 AAA family ATP 96.5 0.027 5.9E-07 71.0 14.8 177 157-363 176-383 (733)
217 PF00448 SRP54: SRP54-type pro 96.5 0.016 3.4E-07 59.5 10.1 88 181-270 2-93 (196)
218 KOG0741 AAA+-type ATPase [Post 96.5 0.094 2E-06 59.2 16.4 152 180-357 538-704 (744)
219 COG0470 HolB ATPase involved i 96.5 0.019 4.2E-07 65.1 11.9 143 161-328 3-172 (325)
220 COG1875 NYN ribonuclease and A 96.5 0.0065 1.4E-07 65.3 7.1 136 160-307 225-389 (436)
221 PRK12377 putative replication 96.4 0.016 3.4E-07 61.6 9.9 75 180-272 101-175 (248)
222 PRK07261 topology modulation p 96.4 0.0086 1.9E-07 60.2 7.6 35 182-216 2-37 (171)
223 PRK00771 signal recognition pa 96.3 0.14 3E-06 59.2 17.5 88 180-271 95-186 (437)
224 KOG1969 DNA replication checkp 96.3 0.01 2.2E-07 69.5 7.9 75 179-272 325-399 (877)
225 COG1484 DnaC DNA replication p 96.3 0.018 3.8E-07 61.8 9.5 85 168-272 95-179 (254)
226 COG0542 clpA ATP-binding subun 96.3 0.058 1.3E-06 65.5 14.3 105 159-272 491-605 (786)
227 KOG0652 26S proteasome regulat 96.3 0.2 4.3E-06 51.2 15.7 192 154-372 166-392 (424)
228 PRK06526 transposase; Provisio 96.3 0.0037 8E-08 66.9 3.9 74 180-272 98-171 (254)
229 KOG0734 AAA+-type ATPase conta 96.2 0.014 3.1E-07 65.5 8.4 89 163-272 311-408 (752)
230 COG0464 SpoVK ATPases of the A 96.2 0.069 1.5E-06 64.3 15.3 161 158-339 241-425 (494)
231 KOG0735 AAA+-type ATPase [Post 96.2 0.08 1.7E-06 62.0 14.4 174 158-362 666-871 (952)
232 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.027 5.9E-07 60.4 10.5 93 179-272 18-127 (235)
233 PRK07952 DNA replication prote 96.2 0.039 8.5E-07 58.5 11.2 89 167-272 84-174 (244)
234 PLN00020 ribulose bisphosphate 96.2 0.071 1.5E-06 58.6 13.1 29 179-207 147-175 (413)
235 cd01393 recA_like RecA is a b 96.2 0.031 6.7E-07 59.5 10.7 49 180-228 19-71 (226)
236 PRK04132 replication factor C 96.2 0.069 1.5E-06 66.4 14.7 157 188-369 574-733 (846)
237 KOG2035 Replication factor C, 96.1 0.13 2.8E-06 53.4 13.9 209 159-390 13-262 (351)
238 PRK08939 primosomal protein Dn 96.1 0.028 6.1E-07 62.0 10.0 91 163-272 135-229 (306)
239 PRK09183 transposase/IS protei 96.1 0.0082 1.8E-07 64.8 5.7 27 180-206 102-128 (259)
240 COG2607 Predicted ATPase (AAA+ 96.1 0.038 8.3E-07 56.0 9.7 92 155-273 56-152 (287)
241 KOG0743 AAA+-type ATPase [Post 96.0 0.59 1.3E-05 52.6 19.6 173 166-371 212-413 (457)
242 KOG1909 Ran GTPase-activating 96.0 0.0033 7.2E-08 67.0 2.3 107 519-625 157-283 (382)
243 KOG4579 Leucine-rich repeat (L 96.0 0.00077 1.7E-08 61.5 -2.1 88 564-652 50-139 (177)
244 PF13207 AAA_17: AAA domain; P 96.0 0.0056 1.2E-07 57.7 3.6 24 182-205 1-24 (121)
245 PRK08699 DNA polymerase III su 96.0 0.054 1.2E-06 60.4 11.8 154 180-363 21-202 (325)
246 PRK14722 flhF flagellar biosyn 96.0 0.032 7E-07 62.6 9.7 90 180-272 137-227 (374)
247 smart00763 AAA_PrkA PrkA AAA d 95.9 0.011 2.5E-07 65.2 5.8 47 160-206 52-104 (361)
248 PRK09361 radB DNA repair and r 95.9 0.033 7.2E-07 59.2 9.3 45 180-227 23-67 (225)
249 KOG0735 AAA+-type ATPase [Post 95.9 0.054 1.2E-06 63.3 11.2 166 181-367 432-616 (952)
250 TIGR03346 chaperone_ClpB ATP-d 95.9 0.018 3.8E-07 73.6 8.3 106 159-272 565-679 (852)
251 COG2884 FtsE Predicted ATPase 95.9 0.026 5.6E-07 55.2 7.3 35 179-216 27-61 (223)
252 TIGR02012 tigrfam_recA protein 95.9 0.019 4.1E-07 63.1 7.3 87 179-272 54-145 (321)
253 TIGR01425 SRP54_euk signal rec 95.9 0.52 1.1E-05 54.1 18.9 37 180-218 100-136 (429)
254 COG0542 clpA ATP-binding subun 95.9 0.011 2.3E-07 71.7 5.6 156 158-337 169-346 (786)
255 TIGR02238 recomb_DMC1 meiotic 95.8 0.031 6.8E-07 61.8 8.9 92 180-272 96-203 (313)
256 cd01133 F1-ATPase_beta F1 ATP 95.8 0.068 1.5E-06 57.1 11.0 93 179-272 68-175 (274)
257 KOG2228 Origin recognition com 95.8 0.21 4.5E-06 53.5 14.2 169 160-338 25-220 (408)
258 cd01120 RecA-like_NTPases RecA 95.8 0.051 1.1E-06 54.4 9.9 40 182-223 1-40 (165)
259 PTZ00494 tuzin-like protein; P 95.8 0.44 9.5E-06 53.2 17.1 162 158-337 370-544 (664)
260 PRK09354 recA recombinase A; P 95.8 0.044 9.5E-07 60.8 9.8 86 180-272 60-150 (349)
261 CHL00095 clpC Clp protease ATP 95.8 0.025 5.5E-07 72.0 9.1 106 159-272 509-623 (821)
262 TIGR03499 FlhF flagellar biosy 95.8 0.05 1.1E-06 59.6 10.2 87 180-269 194-281 (282)
263 cd00983 recA RecA is a bacter 95.8 0.024 5.3E-07 62.3 7.5 86 180-272 55-145 (325)
264 PRK05541 adenylylsulfate kinas 95.7 0.025 5.4E-07 57.4 7.0 37 179-217 6-42 (176)
265 COG1618 Predicted nucleotide k 95.7 0.014 3.1E-07 55.3 4.6 30 181-211 6-35 (179)
266 KOG0727 26S proteasome regulat 95.7 0.49 1.1E-05 48.2 15.5 93 159-272 155-260 (408)
267 PF01695 IstB_IS21: IstB-like 95.7 0.017 3.8E-07 58.2 5.6 74 180-272 47-120 (178)
268 PRK10733 hflB ATP-dependent me 95.7 0.2 4.3E-06 61.8 15.8 177 158-359 151-355 (644)
269 PRK04296 thymidine kinase; Pro 95.7 0.013 2.9E-07 60.0 4.8 111 181-307 3-117 (190)
270 PRK10865 protein disaggregatio 95.6 0.029 6.3E-07 71.3 8.7 106 159-272 568-682 (857)
271 PRK07132 DNA polymerase III su 95.6 0.27 5.9E-06 53.9 15.1 162 168-366 5-184 (299)
272 PF08423 Rad51: Rad51; InterP 95.6 0.058 1.3E-06 58.1 9.7 92 180-272 38-145 (256)
273 PLN03187 meiotic recombination 95.6 0.07 1.5E-06 59.5 10.4 91 180-271 126-232 (344)
274 PRK12727 flagellar biosynthesi 95.6 0.084 1.8E-06 61.4 11.2 89 179-270 349-438 (559)
275 PRK11034 clpA ATP-dependent Cl 95.6 0.02 4.3E-07 70.9 6.8 102 160-272 459-569 (758)
276 PF07693 KAP_NTPase: KAP famil 95.6 0.37 8E-06 54.6 16.7 43 165-207 2-47 (325)
277 PRK06696 uridine kinase; Valid 95.5 0.023 5E-07 60.1 6.2 44 163-206 2-48 (223)
278 KOG2123 Uncharacterized conser 95.5 0.00092 2E-08 68.5 -4.3 57 588-644 39-97 (388)
279 KOG0739 AAA+-type ATPase [Post 95.4 0.069 1.5E-06 55.7 8.7 94 158-272 132-237 (439)
280 PLN03186 DNA repair protein RA 95.4 0.06 1.3E-06 60.1 9.1 91 180-271 123-229 (342)
281 PRK06921 hypothetical protein; 95.4 0.076 1.6E-06 57.5 9.6 72 179-270 116-187 (266)
282 TIGR03877 thermo_KaiC_1 KaiC d 95.3 0.11 2.4E-06 55.5 10.7 49 179-231 20-68 (237)
283 COG4088 Predicted nucleotide k 95.3 0.074 1.6E-06 52.6 8.1 27 181-207 2-28 (261)
284 PRK11889 flhF flagellar biosyn 95.3 0.17 3.6E-06 56.6 11.8 90 179-271 240-331 (436)
285 KOG2123 Uncharacterized conser 95.2 0.0015 3.2E-08 67.0 -3.8 80 541-625 19-101 (388)
286 PRK09270 nucleoside triphospha 95.2 0.14 3E-06 54.5 10.8 30 178-207 31-60 (229)
287 TIGR02239 recomb_RAD51 DNA rep 95.2 0.074 1.6E-06 59.1 9.0 91 180-271 96-202 (316)
288 PRK04301 radA DNA repair and r 95.2 0.11 2.5E-06 58.2 10.6 57 180-237 102-162 (317)
289 KOG4579 Leucine-rich repeat (L 95.2 0.0036 7.8E-08 57.3 -1.1 73 558-630 68-141 (177)
290 cd01394 radB RadB. The archaea 95.1 0.084 1.8E-06 55.8 9.0 43 179-223 18-60 (218)
291 KOG0744 AAA+-type ATPase [Post 95.1 0.029 6.3E-07 59.2 5.2 28 180-207 177-204 (423)
292 PRK14974 cell division protein 95.1 0.26 5.6E-06 55.0 12.9 91 179-272 139-234 (336)
293 TIGR02236 recomb_radA DNA repa 95.1 0.11 2.3E-06 58.3 10.2 57 180-237 95-155 (310)
294 cd03115 SRP The signal recogni 95.1 0.11 2.4E-06 52.5 9.4 88 182-271 2-93 (173)
295 PRK13531 regulatory ATPase Rav 95.1 0.03 6.5E-07 64.4 5.6 51 159-211 20-70 (498)
296 PTZ00035 Rad51 protein; Provis 95.1 0.12 2.6E-06 58.0 10.3 91 180-271 118-224 (337)
297 PRK08533 flagellar accessory p 95.1 0.12 2.6E-06 54.7 9.8 52 180-236 24-75 (230)
298 TIGR01650 PD_CobS cobaltochela 95.0 0.18 3.9E-06 55.4 11.1 62 160-228 46-107 (327)
299 COG1419 FlhF Flagellar GTP-bin 95.0 0.21 4.6E-06 55.7 11.7 99 168-270 187-291 (407)
300 COG0468 RecA RecA/RadA recombi 95.0 0.16 3.6E-06 54.5 10.6 90 180-272 60-153 (279)
301 KOG2739 Leucine-rich acidic nu 95.0 0.014 3.1E-07 60.2 2.4 83 564-646 62-154 (260)
302 COG1102 Cmk Cytidylate kinase 95.0 0.075 1.6E-06 50.6 6.9 45 182-239 2-46 (179)
303 TIGR00064 ftsY signal recognit 95.0 0.19 4.2E-06 54.5 11.2 90 179-271 71-165 (272)
304 PRK12724 flagellar biosynthesi 94.9 0.11 2.3E-06 59.0 9.3 84 180-269 223-308 (432)
305 KOG3347 Predicted nucleotide k 94.9 0.047 1E-06 51.0 5.2 69 180-258 7-75 (176)
306 PRK06067 flagellar accessory p 94.9 0.15 3.3E-06 54.5 10.1 87 179-270 24-130 (234)
307 COG1066 Sms Predicted ATP-depe 94.9 0.12 2.6E-06 57.0 9.1 87 180-272 93-180 (456)
308 PRK06835 DNA replication prote 94.8 0.15 3.1E-06 56.9 10.0 75 181-272 184-258 (329)
309 PRK12723 flagellar biosynthesi 94.8 0.23 4.9E-06 56.5 11.7 90 180-272 174-266 (388)
310 PRK12726 flagellar biosynthesi 94.8 0.2 4.3E-06 55.8 10.7 90 179-271 205-296 (407)
311 KOG0729 26S proteasome regulat 94.8 0.18 3.8E-06 51.7 9.3 94 158-272 176-282 (435)
312 PF13481 AAA_25: AAA domain; P 94.8 0.16 3.4E-06 52.5 9.6 90 181-272 33-153 (193)
313 cd01121 Sms Sms (bacterial rad 94.7 0.11 2.4E-06 59.0 8.8 88 180-272 82-170 (372)
314 PRK15455 PrkA family serine pr 94.7 0.041 8.8E-07 64.1 5.3 49 158-206 75-129 (644)
315 PRK06547 hypothetical protein; 94.7 0.049 1.1E-06 54.6 5.3 35 171-205 6-40 (172)
316 PRK10867 signal recognition pa 94.6 0.19 4.2E-06 58.0 10.4 29 179-207 99-127 (433)
317 COG0541 Ffh Signal recognition 94.6 2.8 6E-05 47.3 18.7 58 180-239 100-158 (451)
318 PF13238 AAA_18: AAA domain; P 94.5 0.029 6.4E-07 53.4 3.3 22 183-204 1-22 (129)
319 PRK05703 flhF flagellar biosyn 94.5 0.24 5.2E-06 57.5 11.3 88 180-270 221-309 (424)
320 TIGR02858 spore_III_AA stage I 94.5 0.051 1.1E-06 58.6 5.4 114 177-308 108-231 (270)
321 PF00154 RecA: recA bacterial 94.5 0.11 2.5E-06 56.9 8.1 86 180-272 53-143 (322)
322 PF07728 AAA_5: AAA domain (dy 94.5 0.075 1.6E-06 51.5 6.1 76 183-272 2-77 (139)
323 PF02562 PhoH: PhoH-like prote 94.5 0.053 1.1E-06 55.4 5.1 52 164-217 5-56 (205)
324 PRK04328 hypothetical protein; 94.5 0.17 3.7E-06 54.4 9.3 41 179-221 22-62 (249)
325 PF10236 DAP3: Mitochondrial r 94.4 1.1 2.3E-05 50.0 15.6 47 318-364 258-306 (309)
326 PF01583 APS_kinase: Adenylyls 94.4 0.074 1.6E-06 51.7 5.7 36 180-217 2-37 (156)
327 TIGR00959 ffh signal recogniti 94.4 0.23 5E-06 57.3 10.6 90 180-270 99-192 (428)
328 PRK13765 ATP-dependent proteas 94.4 0.085 1.8E-06 63.9 7.4 79 155-237 27-105 (637)
329 PRK07667 uridine kinase; Provi 94.4 0.066 1.4E-06 55.1 5.7 38 169-206 4-43 (193)
330 PF00560 LRR_1: Leucine Rich R 94.4 0.021 4.6E-07 34.8 1.2 22 568-589 1-22 (22)
331 COG0563 Adk Adenylate kinase a 94.4 0.073 1.6E-06 53.5 5.8 25 182-206 2-26 (178)
332 KOG2739 Leucine-rich acidic nu 94.4 0.024 5.1E-07 58.6 2.2 102 565-667 41-150 (260)
333 KOG0738 AAA+-type ATPase [Post 94.4 0.12 2.5E-06 56.4 7.4 50 158-207 211-272 (491)
334 COG0465 HflB ATP-dependent Zn 94.4 0.42 9E-06 56.7 12.6 179 158-362 149-356 (596)
335 PRK05917 DNA polymerase III su 94.3 0.62 1.3E-05 50.5 12.9 129 168-324 6-154 (290)
336 TIGR00554 panK_bact pantothena 94.3 0.26 5.6E-06 53.7 10.1 45 178-222 60-104 (290)
337 TIGR03878 thermo_KaiC_2 KaiC d 94.3 0.18 4E-06 54.5 9.0 39 180-220 36-74 (259)
338 cd01124 KaiC KaiC is a circadi 94.2 0.14 3E-06 52.6 7.7 44 183-230 2-45 (187)
339 cd02019 NK Nucleoside/nucleoti 94.2 0.042 9E-07 45.5 3.0 23 182-204 1-23 (69)
340 PF13306 LRR_5: Leucine rich r 94.1 0.16 3.4E-06 48.4 7.4 62 557-620 25-89 (129)
341 cd02025 PanK Pantothenate kina 94.1 0.25 5.4E-06 51.9 9.4 41 182-222 1-41 (220)
342 PF00006 ATP-synt_ab: ATP synt 94.0 0.22 4.7E-06 51.7 8.6 97 172-272 6-117 (215)
343 cd01135 V_A-ATPase_B V/A-type 94.0 0.41 8.9E-06 51.2 10.6 94 179-272 68-178 (276)
344 PRK14721 flhF flagellar biosyn 94.0 0.37 8.1E-06 55.3 11.0 87 180-269 191-278 (420)
345 COG4608 AppF ABC-type oligopep 93.9 0.2 4.4E-06 52.7 8.0 146 179-333 38-198 (268)
346 PF05659 RPW8: Arabidopsis bro 93.9 0.63 1.4E-05 44.8 10.8 113 1-133 1-114 (147)
347 cd01131 PilT Pilus retraction 93.9 0.058 1.3E-06 55.8 4.2 109 181-308 2-111 (198)
348 PRK05439 pantothenate kinase; 93.9 0.48 1E-05 52.0 11.3 45 178-222 84-128 (311)
349 PRK00889 adenylylsulfate kinas 93.9 0.2 4.4E-06 50.7 8.0 28 179-206 3-30 (175)
350 CHL00206 ycf2 Ycf2; Provisiona 93.9 0.32 6.8E-06 64.3 11.2 27 180-206 1630-1656(2281)
351 PF12775 AAA_7: P-loop contain 93.9 0.053 1.1E-06 58.9 3.9 90 169-272 23-112 (272)
352 PRK06995 flhF flagellar biosyn 93.8 0.32 6.9E-06 56.8 10.2 88 180-270 256-344 (484)
353 PF00910 RNA_helicase: RNA hel 93.8 0.049 1.1E-06 49.8 2.9 24 183-206 1-24 (107)
354 PF13671 AAA_33: AAA domain; P 93.8 0.057 1.2E-06 52.6 3.6 24 182-205 1-24 (143)
355 PRK12597 F0F1 ATP synthase sub 93.7 0.39 8.5E-06 55.6 10.7 93 179-272 142-249 (461)
356 PRK14723 flhF flagellar biosyn 93.7 0.5 1.1E-05 58.0 12.1 88 180-270 185-273 (767)
357 cd02027 APSK Adenosine 5'-phos 93.7 0.19 4.2E-06 49.1 7.2 25 182-206 1-25 (149)
358 PF00560 LRR_1: Leucine Rich R 93.7 0.027 5.8E-07 34.4 0.7 21 613-633 1-21 (22)
359 PF00485 PRK: Phosphoribulokin 93.7 0.059 1.3E-06 55.6 3.8 25 182-206 1-25 (194)
360 PRK10463 hydrogenase nickel in 93.7 0.25 5.5E-06 53.3 8.5 96 170-271 94-195 (290)
361 PF13245 AAA_19: Part of AAA d 93.7 0.21 4.4E-06 42.1 6.3 26 179-204 9-34 (76)
362 KOG1051 Chaperone HSP104 and r 93.7 0.48 1E-05 58.8 11.8 103 160-273 563-673 (898)
363 PRK08233 hypothetical protein; 93.6 0.063 1.4E-06 54.9 3.7 26 180-205 3-28 (182)
364 TIGR03575 selen_PSTK_euk L-ser 93.6 0.27 5.9E-06 54.7 8.8 37 183-220 2-38 (340)
365 PF03308 ArgK: ArgK protein; 93.6 0.17 3.8E-06 52.8 6.8 60 168-227 15-76 (266)
366 COG1428 Deoxynucleoside kinase 93.5 0.13 2.9E-06 51.7 5.6 49 180-233 4-52 (216)
367 PF06745 KaiC: KaiC; InterPro 93.5 0.15 3.3E-06 54.2 6.6 89 180-272 19-127 (226)
368 PRK05480 uridine/cytidine kina 93.5 0.074 1.6E-06 55.7 4.2 27 178-204 4-30 (209)
369 TIGR00150 HI0065_YjeE ATPase, 93.5 0.14 3E-06 48.3 5.4 28 179-206 21-48 (133)
370 PF03215 Rad17: Rad17 cell cyc 93.4 0.13 2.9E-06 60.9 6.4 57 158-218 18-79 (519)
371 KOG0737 AAA+-type ATPase [Post 93.4 0.79 1.7E-05 50.1 11.5 28 180-207 127-154 (386)
372 PF08433 KTI12: Chromatin asso 93.4 0.058 1.3E-06 58.2 3.2 26 181-206 2-27 (270)
373 PRK03839 putative kinase; Prov 93.4 0.069 1.5E-06 54.4 3.6 24 182-205 2-25 (180)
374 COG1224 TIP49 DNA helicase TIP 93.4 0.15 3.2E-06 55.0 5.9 56 156-211 36-96 (450)
375 PF06068 TIP49: TIP49 C-termin 93.4 0.11 2.4E-06 57.0 5.1 53 158-210 23-80 (398)
376 TIGR00764 lon_rel lon-related 93.4 0.19 4E-06 61.3 7.7 77 157-237 16-92 (608)
377 TIGR00235 udk uridine kinase. 93.3 0.081 1.8E-06 55.3 4.1 28 178-205 4-31 (207)
378 PTZ00301 uridine kinase; Provi 93.3 0.081 1.8E-06 54.8 4.0 26 180-205 3-28 (210)
379 PRK06762 hypothetical protein; 93.3 0.077 1.7E-06 53.3 3.8 24 181-204 3-26 (166)
380 PRK05342 clpX ATP-dependent pr 93.3 0.12 2.6E-06 59.5 5.7 46 160-205 72-133 (412)
381 KOG3354 Gluconate kinase [Carb 93.3 0.27 5.8E-06 46.3 6.7 26 181-206 13-38 (191)
382 TIGR03881 KaiC_arch_4 KaiC dom 93.3 0.7 1.5E-05 49.2 11.3 41 179-221 19-59 (229)
383 TIGR03305 alt_F1F0_F1_bet alte 93.3 0.48 1E-05 54.6 10.4 93 179-272 137-244 (449)
384 PRK09519 recA DNA recombinatio 93.3 0.35 7.5E-06 59.5 9.7 86 180-272 60-150 (790)
385 PF03205 MobB: Molybdopterin g 93.2 0.16 3.5E-06 48.8 5.7 39 181-220 1-39 (140)
386 PRK06217 hypothetical protein; 93.2 0.14 3E-06 52.3 5.5 34 182-216 3-38 (183)
387 KOG0726 26S proteasome regulat 93.2 0.46 9.9E-06 49.6 9.0 95 157-272 183-290 (440)
388 PRK00625 shikimate kinase; Pro 93.2 0.073 1.6E-06 53.3 3.3 24 182-205 2-25 (173)
389 PRK14529 adenylate kinase; Pro 93.2 0.27 5.8E-06 51.3 7.5 84 183-272 3-88 (223)
390 TIGR00390 hslU ATP-dependent p 93.2 0.25 5.4E-06 55.8 7.7 48 159-206 12-73 (441)
391 PF07726 AAA_3: ATPase family 93.2 0.063 1.4E-06 49.6 2.5 28 183-212 2-29 (131)
392 COG0488 Uup ATPase components 93.1 0.54 1.2E-05 55.9 10.8 128 180-322 348-510 (530)
393 PTZ00088 adenylate kinase 1; P 93.1 0.14 3.1E-06 53.9 5.3 24 182-205 8-31 (229)
394 PRK04040 adenylate kinase; Pro 93.0 0.088 1.9E-06 53.7 3.7 25 181-205 3-27 (188)
395 TIGR01360 aden_kin_iso1 adenyl 93.0 0.089 1.9E-06 54.1 3.8 26 179-204 2-27 (188)
396 COG1703 ArgK Putative periplas 93.0 0.22 4.7E-06 52.8 6.4 64 169-232 38-103 (323)
397 PRK11823 DNA repair protein Ra 93.0 0.23 5.1E-06 58.1 7.6 87 180-271 80-167 (446)
398 COG0572 Udk Uridine kinase [Nu 92.9 0.1 2.2E-06 53.3 3.8 29 179-207 7-35 (218)
399 KOG1532 GTPase XAB1, interacts 92.9 0.12 2.6E-06 53.4 4.3 29 180-208 19-47 (366)
400 COG0467 RAD55 RecA-superfamily 92.9 0.15 3.2E-06 55.6 5.5 51 178-232 21-71 (260)
401 PF06309 Torsin: Torsin; Inte 92.9 0.22 4.9E-06 45.9 5.7 45 160-204 26-77 (127)
402 COG3640 CooC CO dehydrogenase 92.9 0.23 4.9E-06 50.7 6.1 51 182-240 2-52 (255)
403 CHL00081 chlI Mg-protoporyphyr 92.9 0.15 3.2E-06 57.0 5.4 49 157-205 15-63 (350)
404 TIGR02030 BchI-ChlI magnesium 92.9 0.16 3.4E-06 56.8 5.6 47 158-204 3-49 (337)
405 cd03214 ABC_Iron-Siderophores_ 92.9 0.25 5.5E-06 50.2 6.8 120 179-309 24-161 (180)
406 PRK06002 fliI flagellum-specif 92.8 0.28 6.1E-06 56.4 7.7 91 179-272 164-266 (450)
407 PRK13407 bchI magnesium chelat 92.8 0.15 3.3E-06 56.7 5.5 48 157-204 6-53 (334)
408 TIGR01039 atpD ATP synthase, F 92.8 0.88 1.9E-05 52.4 11.4 93 179-272 142-249 (461)
409 cd01125 repA Hexameric Replica 92.8 0.55 1.2E-05 50.3 9.5 24 182-205 3-26 (239)
410 cd00544 CobU Adenosylcobinamid 92.7 0.4 8.7E-06 47.8 7.8 82 183-271 2-84 (169)
411 COG1936 Predicted nucleotide k 92.7 0.093 2E-06 50.8 3.0 20 182-201 2-21 (180)
412 COG0529 CysC Adenylylsulfate k 92.6 0.22 4.9E-06 48.3 5.4 31 177-207 20-50 (197)
413 cd03281 ABC_MSH5_euk MutS5 hom 92.6 0.12 2.5E-06 54.1 4.0 24 180-203 29-52 (213)
414 KOG3864 Uncharacterized conser 92.6 0.032 6.9E-07 55.2 -0.2 70 813-885 120-189 (221)
415 PRK12678 transcription termina 92.6 0.23 5.1E-06 57.7 6.6 101 171-272 406-515 (672)
416 cd01122 GP4d_helicase GP4d_hel 92.6 0.88 1.9E-05 49.9 11.2 52 180-234 30-81 (271)
417 TIGR00416 sms DNA repair prote 92.6 0.34 7.4E-06 56.8 8.2 88 179-271 93-181 (454)
418 cd03247 ABCC_cytochrome_bd The 92.5 0.21 4.6E-06 50.7 5.8 26 180-205 28-53 (178)
419 TIGR02655 circ_KaiC circadian 92.5 0.43 9.4E-06 56.9 9.2 88 179-271 262-364 (484)
420 COG0714 MoxR-like ATPases [Gen 92.5 0.26 5.7E-06 55.7 7.0 66 160-232 25-90 (329)
421 PRK08927 fliI flagellum-specif 92.4 0.74 1.6E-05 52.9 10.4 90 179-272 157-260 (442)
422 PRK09280 F0F1 ATP synthase sub 92.4 0.89 1.9E-05 52.6 11.0 93 179-272 143-250 (463)
423 PRK15429 formate hydrogenlyase 92.4 0.83 1.8E-05 57.4 11.8 48 158-205 375-424 (686)
424 PRK00131 aroK shikimate kinase 92.3 0.13 2.8E-06 52.2 3.8 26 180-205 4-29 (175)
425 PRK07276 DNA polymerase III su 92.3 3.1 6.8E-05 45.3 14.5 153 165-335 8-173 (290)
426 TIGR02902 spore_lonB ATP-depen 92.3 0.15 3.2E-06 61.4 4.8 48 158-205 64-111 (531)
427 PRK08972 fliI flagellum-specif 92.3 0.56 1.2E-05 53.7 9.0 90 179-272 161-264 (444)
428 TIGR01359 UMP_CMP_kin_fam UMP- 92.2 0.1 2.2E-06 53.4 3.0 24 182-205 1-24 (183)
429 cd00561 CobA_CobO_BtuR ATP:cor 92.2 0.3 6.5E-06 47.7 5.9 117 181-307 3-139 (159)
430 KOG3864 Uncharacterized conser 92.2 0.029 6.2E-07 55.5 -1.1 45 948-992 122-166 (221)
431 cd00227 CPT Chloramphenicol (C 92.2 0.13 2.9E-06 52.0 3.7 26 180-205 2-27 (175)
432 PRK05201 hslU ATP-dependent pr 92.2 0.4 8.6E-06 54.3 7.6 48 159-206 15-76 (443)
433 PRK06851 hypothetical protein; 92.1 1.3 2.7E-05 50.0 11.5 44 177-221 211-254 (367)
434 PF13306 LRR_5: Leucine rich r 92.0 0.45 9.7E-06 45.2 7.0 106 558-669 3-112 (129)
435 PTZ00185 ATPase alpha subunit; 92.0 0.86 1.9E-05 52.7 10.0 93 179-272 188-301 (574)
436 PRK10751 molybdopterin-guanine 92.0 0.17 3.8E-06 50.2 4.1 28 179-206 5-32 (173)
437 COG4619 ABC-type uncharacteriz 91.9 0.93 2E-05 43.6 8.5 27 180-206 29-55 (223)
438 cd01134 V_A-ATPase_A V/A-type 91.9 1.2 2.5E-05 49.3 10.6 89 179-271 156-265 (369)
439 PRK09435 membrane ATPase/prote 91.9 1.5 3.2E-05 48.9 11.7 38 170-207 44-83 (332)
440 PRK00409 recombination and DNA 91.9 0.41 8.9E-06 60.2 8.3 179 179-388 326-527 (782)
441 TIGR02322 phosphon_PhnN phosph 91.9 0.14 3E-06 52.2 3.5 25 181-205 2-26 (179)
442 COG2019 AdkA Archaeal adenylat 91.9 0.16 3.5E-06 48.6 3.5 25 180-204 4-28 (189)
443 PRK10416 signal recognition pa 91.9 1.7 3.7E-05 48.4 12.2 38 179-218 113-150 (318)
444 PF00625 Guanylate_kin: Guanyl 91.9 0.2 4.3E-06 51.1 4.6 38 180-219 2-39 (183)
445 cd02024 NRK1 Nicotinamide ribo 91.9 0.12 2.7E-06 52.2 3.0 23 182-204 1-23 (187)
446 cd02029 PRK_like Phosphoribulo 91.8 0.69 1.5E-05 49.0 8.5 25 182-206 1-25 (277)
447 TIGR01069 mutS2 MutS2 family p 91.8 0.17 3.7E-06 63.4 4.7 186 179-388 321-522 (771)
448 COG0003 ArsA Predicted ATPase 91.8 0.31 6.7E-06 53.8 6.2 49 180-230 2-50 (322)
449 PRK15453 phosphoribulokinase; 91.8 1 2.2E-05 48.3 9.7 27 179-205 4-30 (290)
450 PRK14531 adenylate kinase; Pro 91.8 0.23 5.1E-06 50.6 5.0 25 181-205 3-27 (183)
451 cd02020 CMPK Cytidine monophos 91.8 0.13 2.9E-06 50.3 3.1 24 182-205 1-24 (147)
452 PRK13947 shikimate kinase; Pro 91.8 0.14 3.1E-06 51.6 3.3 25 182-206 3-27 (171)
453 KOG0651 26S proteasome regulat 91.7 0.36 7.7E-06 51.2 6.0 93 159-272 132-237 (388)
454 cd02021 GntK Gluconate kinase 91.6 0.13 2.8E-06 50.5 2.9 23 182-204 1-23 (150)
455 TIGR02655 circ_KaiC circadian 91.6 0.65 1.4E-05 55.4 9.2 86 179-269 20-129 (484)
456 PF03266 NTPase_1: NTPase; In 91.6 0.26 5.6E-06 49.2 4.9 24 183-206 2-25 (168)
457 COG1124 DppF ABC-type dipeptid 91.6 0.17 3.6E-06 52.1 3.5 27 179-205 32-58 (252)
458 PF13604 AAA_30: AAA domain; P 91.5 0.5 1.1E-05 48.7 7.1 36 172-207 10-45 (196)
459 cd02028 UMPK_like Uridine mono 91.5 0.16 3.4E-06 51.5 3.3 25 182-206 1-25 (179)
460 PF05970 PIF1: PIF1-like helic 91.5 0.46 9.9E-06 54.4 7.4 41 167-207 9-49 (364)
461 cd02023 UMPK Uridine monophosp 91.5 0.14 2.9E-06 53.2 2.9 23 182-204 1-23 (198)
462 PRK13949 shikimate kinase; Pro 91.4 0.17 3.7E-06 50.6 3.5 24 182-205 3-26 (169)
463 KOG2170 ATPase of the AAA+ sup 91.3 0.66 1.4E-05 49.2 7.5 98 161-272 84-190 (344)
464 cd00984 DnaB_C DnaB helicase C 91.3 0.99 2.2E-05 48.5 9.6 50 180-232 13-62 (242)
465 PF03193 DUF258: Protein of un 91.2 0.31 6.7E-06 47.6 4.8 34 168-204 26-59 (161)
466 PRK12339 2-phosphoglycerate ki 91.2 0.2 4.4E-06 51.3 3.8 25 180-204 3-27 (197)
467 CHL00060 atpB ATP synthase CF1 91.2 0.75 1.6E-05 53.4 8.6 93 179-272 160-274 (494)
468 PRK14530 adenylate kinase; Pro 91.2 0.19 4E-06 52.9 3.6 25 181-205 4-28 (215)
469 PRK08149 ATP synthase SpaL; Va 91.2 0.88 1.9E-05 52.3 9.2 90 179-272 150-253 (428)
470 COG5238 RNA1 Ran GTPase-activa 91.2 0.27 5.8E-06 50.9 4.4 80 566-645 29-130 (388)
471 PF13086 AAA_11: AAA domain; P 91.1 0.41 8.8E-06 51.2 6.3 35 168-204 7-41 (236)
472 TIGR00073 hypB hydrogenase acc 91.1 0.24 5.2E-06 51.7 4.3 31 175-205 17-47 (207)
473 cd00464 SK Shikimate kinase (S 91.0 0.19 4.1E-06 49.6 3.4 23 183-205 2-24 (154)
474 PRK05057 aroK shikimate kinase 91.0 0.21 4.5E-06 50.3 3.6 26 180-205 4-29 (172)
475 PRK06793 fliI flagellum-specif 91.0 0.51 1.1E-05 54.3 7.0 92 178-272 154-258 (432)
476 PF12061 DUF3542: Protein of u 90.9 0.82 1.8E-05 48.3 7.7 59 37-97 314-372 (402)
477 PF02374 ArsA_ATPase: Anion-tr 90.9 0.42 9.2E-06 52.9 6.2 46 181-228 2-47 (305)
478 PF00158 Sigma54_activat: Sigm 90.9 0.33 7.2E-06 48.4 4.8 43 162-204 2-46 (168)
479 cd01136 ATPase_flagellum-secre 90.9 1.3 2.8E-05 49.1 9.8 90 179-272 68-171 (326)
480 PRK03846 adenylylsulfate kinas 90.8 0.35 7.6E-06 50.1 5.2 29 178-206 22-50 (198)
481 TIGR01313 therm_gnt_kin carboh 90.8 0.17 3.6E-06 50.6 2.7 22 183-204 1-22 (163)
482 TIGR00176 mobB molybdopterin-g 90.8 0.22 4.8E-06 48.9 3.5 33 182-215 1-33 (155)
483 PF10923 DUF2791: P-loop Domai 90.8 2 4.4E-05 49.0 11.5 94 161-256 27-131 (416)
484 PRK06936 type III secretion sy 90.8 1 2.3E-05 51.7 9.3 91 178-272 160-264 (439)
485 TIGR01040 V-ATPase_V1_B V-type 90.8 0.75 1.6E-05 52.8 8.0 94 179-272 140-259 (466)
486 PRK00300 gmk guanylate kinase; 90.8 0.22 4.7E-06 52.0 3.7 26 179-204 4-29 (205)
487 PRK05800 cobU adenosylcobinami 90.8 0.63 1.4E-05 46.5 6.8 23 182-204 3-25 (170)
488 COG3854 SpoIIIAA ncharacterize 90.8 0.53 1.1E-05 47.7 6.0 117 171-307 128-254 (308)
489 PRK13975 thymidylate kinase; P 90.7 0.22 4.8E-06 51.5 3.7 26 181-206 3-28 (196)
490 PRK13695 putative NTPase; Prov 90.7 0.34 7.3E-06 49.0 4.9 34 182-216 2-35 (174)
491 PHA02774 E1; Provisional 90.7 0.43 9.4E-06 56.0 6.2 48 167-218 420-468 (613)
492 cd00071 GMPK Guanosine monopho 90.7 0.18 3.9E-06 48.5 2.7 24 182-205 1-24 (137)
493 PF08477 Miro: Miro-like prote 90.7 0.22 4.8E-06 46.5 3.3 23 183-205 2-24 (119)
494 PRK09099 type III secretion sy 90.7 0.97 2.1E-05 52.2 8.9 92 178-272 161-265 (441)
495 TIGR01041 ATP_syn_B_arch ATP s 90.7 1.2 2.7E-05 51.7 9.8 94 179-272 140-250 (458)
496 TIGR00750 lao LAO/AO transport 90.7 1.1 2.4E-05 49.7 9.3 30 178-207 32-61 (300)
497 TIGR03263 guanyl_kin guanylate 90.6 0.19 4.1E-06 51.2 3.0 24 181-204 2-25 (180)
498 PRK05973 replicative DNA helic 90.6 0.76 1.6E-05 48.4 7.4 49 179-231 63-111 (237)
499 cd00820 PEPCK_HprK Phosphoenol 90.6 0.26 5.6E-06 44.4 3.4 22 180-201 15-36 (107)
500 TIGR03498 FliI_clade3 flagella 90.6 0.85 1.8E-05 52.4 8.4 91 179-272 139-242 (418)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-78 Score=736.96 Aligned_cols=595 Identities=29% Similarity=0.450 Sum_probs=476.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhHHHHhhccccchHHHHHHHHHHHHHHHhhhchhhhhhhhhh--------------
Q 038494 35 YQSYIAELKVQVKELEYKRERVGIPVREATQQRDEIYKDVADWLNNVDEFISEGVAKSIIDDEDRA-------------- 100 (1209)
Q Consensus 35 ~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~~~~~wl~~~~~~~~d~~~ed~ld~~~~~-------------- 100 (1209)
....+.+.++.+..|++.+..++.++++++++ +.....+..|...+++++|++ |++++.+...
T Consensus 19 ~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~-~~~~~~~~~~~e~~~~~~~~~--e~~~~~~~v~~~~~~~~~~l~~~~ 95 (889)
T KOG4658|consen 19 ESECLDGKDNYILELKENLKALQSALEDLDAK-RDDLERRVNWEEDVGDLVYLA--EDIIWLFLVEEIERKANDLLSTRS 95 (889)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHhhhhH
Confidence 34556677889999999999999999999988 455788999999999999999 9998764210
Q ss_pred ---ccccccccc-CCcchhhhhHHHHHHHHHHHHhhhccCCccccccC-CCCCCccccccccccchhhHHHHHHHHHHHH
Q 038494 101 ---KKSCFKGFC-PNLISRYKLSKQAAKAAEAAASLVGKGNFSSVSHR-PAPESTEHMQAKDFEAFDSRMKLFQDVVEAL 175 (1209)
Q Consensus 101 ---~~~~~~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gR~~~~~~l~~~L 175 (1209)
+.-|+.+++ ..+..-+.+++++-.+...++.+..++.+...... .+++.....|...... ||.+..++++.+.|
T Consensus 96 ~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L 174 (889)
T KOG4658|consen 96 VERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRL 174 (889)
T ss_pred HHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHh
Confidence 011111222 12333344556666666666666655555443321 1111222222222333 99999999999999
Q ss_pred hCCCceEEEEEcCCCChHHHHHHHHHHHHh-hcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCC--hHHHHHHH
Q 038494 176 RNDKLNIIGVHGMGGVGKTTLVKQIAKQVM-EDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDS--KPHRAKQL 252 (1209)
Q Consensus 176 ~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~-~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~--~~~~~~~l 252 (1209)
.+++..+++|+||||+||||||++++|+.. ++++|+.++||.||+.++...++.+|++.++........ .......+
T Consensus 175 ~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i 254 (889)
T KOG4658|consen 175 MEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKL 254 (889)
T ss_pred ccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHH
Confidence 988779999999999999999999999998 899999999999999999999999999999875443332 24566677
Q ss_pred HHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCccccccccCCcEEEEeccchhhhcccCCcceEEEcCCCCHHHHHHH
Q 038494 253 CQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLLTNDMNSQKIFLIEVLSKEEALQF 332 (1209)
Q Consensus 253 ~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~l 332 (1209)
.+.|. +|||+||+||||+..+|+.++.++|... .||||++|||++.|+...++....++++.|+++|||+|
T Consensus 255 ~~~L~-~krfllvLDDIW~~~dw~~I~~~~p~~~--------~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~L 325 (889)
T KOG4658|consen 255 LNLLE-GKRFLLVLDDIWEEVDWDKIGVPFPSRE--------NGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDL 325 (889)
T ss_pred HHHhc-cCceEEEEecccccccHHhcCCCCCCcc--------CCeEEEEEeccHhhhhccccCCccccccccCccccHHH
Confidence 77776 7999999999999999999999999887 89999999999999987788899999999999999999
Q ss_pred HHHHhCCC--CCCCcchHHHHHHHHHhCCChhHHHHHHHHHhcC-ChhHHHHHHHHHhcCCCccccCccccceeeeEEec
Q 038494 333 FEKIVGNS--AKASAFQPLADEIVGKCGGLPVALSTVANALKNK-KLPVWKDALTQLRNSNPREIHGMDANVCSSIELSY 409 (1209)
Q Consensus 333 f~~~~~~~--~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~v~~~l~~sy 409 (1209)
|++.++.. ...+..+++|++++++|+|+|||+.++|+.|+.+ +..+|+.+.+.+.+....+..++.+.+++++++||
T Consensus 326 F~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSy 405 (889)
T KOG4658|consen 326 FQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSY 405 (889)
T ss_pred HHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccH
Confidence 99999844 3334589999999999999999999999999977 77899999999988866666777889999999999
Q ss_pred ccCCchhHHHHHHHhcccCcCccccHHHHHHhh--hhhccccccHHHHHHHHHHHHHHHHhcccccCCC---CCCceEeh
Q 038494 410 NFLESDEAKSLFLLCTLFGEGTPIQVASLLRYG--KGLFKNVRTLENARNRVDALIDNLKASCLLLDGD---AEDEVKMH 484 (1209)
Q Consensus 410 ~~L~~~~~k~c~~~~s~fp~~~~i~~~~li~~~--~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~---~~~~~~mH 484 (1209)
+.||++ +|.||+|||+||+||.|+++.|+.+| +||+.+....+.+++.+.+++.+|++++|+.... +...|+||
T Consensus 406 d~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmH 484 (889)
T KOG4658|consen 406 DNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMH 484 (889)
T ss_pred hhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEee
Confidence 999966 99999999999999999999999986 5799876667778889999999999999998764 45799999
Q ss_pred hHHHHHHHHHhh-----ccceeeecCccchhhhHhhhhcCCeEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccC
Q 038494 485 DVIHVVAVSIAS-----EKLMFSIPNVTNLKEEIEKIIQKGAIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEIS 559 (1209)
Q Consensus 485 dlv~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 559 (1209)
|+|||+|.++++ .++++ +..+.+..+.+....+..+|++++.++.+..++....+++|++|.+..+.+....++
T Consensus 485 DvvRe~al~ias~~~~~~e~~i-v~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is 563 (889)
T KOG4658|consen 485 DVVREMALWIASDFGKQEENQI-VSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEIS 563 (889)
T ss_pred HHHHHHHHHHhccccccccceE-EECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcC
Confidence 999999999999 66633 333333344445556788999999999999999999999999999999864477888
Q ss_pred hhhhcCCCCCcEEEecCc-ccccccccccCCCCCcEEeccCcccCCc-ccccCCCCCCEEEccCCC-CCccchhccCCCC
Q 038494 560 HLFFEGTEDLKVLSLSGI-HFSSLSSSLGHLINLQTLCLDWCQLEDV-AAIGQLKKLEILSFRYSD-IKQLPLEIGQLAQ 636 (1209)
Q Consensus 560 ~~~~~~l~~Lr~L~L~~~-~i~~lp~~i~~l~~L~~L~l~~~~l~~l-~~i~~L~~L~~L~l~~~~-~~~lp~~i~~L~~ 636 (1209)
..+|..++.||+|||++| .+.++|++|+.|.|||||+++++.++.+ .++++|+.|++|++..+. +..+|..+..|++
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~ 643 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS 643 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhccc
Confidence 888999999999999976 5678999999999888888888776665 556666666666665552 2233333333555
Q ss_pred CCEEeccC
Q 038494 637 LQLLDLSN 644 (1209)
Q Consensus 637 L~~L~l~~ 644 (1209)
|++|.+..
T Consensus 644 Lr~L~l~~ 651 (889)
T KOG4658|consen 644 LRVLRLPR 651 (889)
T ss_pred ccEEEeec
Confidence 55555544
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.5e-57 Score=585.20 Aligned_cols=688 Identities=22% Similarity=0.316 Sum_probs=454.8
Q ss_pred cccchhhHHHHHHHHHHHHh--CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEc---CCC----------
Q 038494 157 DFEAFDSRMKLFQDVVEALR--NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEV---TEN---------- 221 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~---s~~---------- 221 (1209)
+..++|||++.++++.+++. .+++++|+||||||+||||||+++|++... +|++.+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeeccccccchhhccccccc
Confidence 35679999999999999875 457899999999999999999999998764 5888877742 111
Q ss_pred -cC-HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCccccccccCCcEE
Q 038494 222 -PD-VQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRRTI 299 (1209)
Q Consensus 222 -~~-~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~i 299 (1209)
+. ...++++++..+-....... .....+.+.+. ++|+||||||||+..+|+.+.....+.+ +|++|
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~---~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~--------~GsrI 327 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKI---YHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFG--------SGSRI 327 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCccc---CCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCC--------CCcEE
Confidence 01 12344444444322211111 11244566665 7999999999999999998876555444 79999
Q ss_pred EEeccchhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCC-CCCcchHHHHHHHHHhCCChhHHHHHHHHHhcCChhH
Q 038494 300 ILTSRSKHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSA-KASAFQPLADEIVGKCGGLPVALSTVANALKNKKLPV 378 (1209)
Q Consensus 300 lvTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~-~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~ 378 (1209)
|||||++.++. ..+...+|+++.++++|||++|+++|+... ++.++++++++|+++|+|+||||+++|++|++++..+
T Consensus 328 IiTTrd~~vl~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~ 406 (1153)
T PLN03210 328 IVITKDKHFLR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKED 406 (1153)
T ss_pred EEEeCcHHHHH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHH
Confidence 99999999875 345668999999999999999999998543 4456789999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccccCccccceeeeEEecccCCchhHHHHHHHhcccCcCccccHHHHHHhhhhhccccccHHHHHHH
Q 038494 379 WKDALTQLRNSNPREIHGMDANVCSSIELSYNFLESDEAKSLFLLCTLFGEGTPIQVASLLRYGKGLFKNVRTLENARNR 458 (1209)
Q Consensus 379 w~~~~~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~~~~s~fp~~~~i~~~~li~~~~g~i~~~~~~~~~~~~ 458 (1209)
|+.++++++... +..|..+|++||++|+++..|.||+++|+|+.+..++....+ ++.+...
T Consensus 407 W~~~l~~L~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~-l~~~~~~----------- 467 (1153)
T PLN03210 407 WMDMLPRLRNGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLL-LANSDLD----------- 467 (1153)
T ss_pred HHHHHHHHHhCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHH-HHhcCCC-----------
Confidence 999999987643 356889999999999875489999999999987655432221 1222111
Q ss_pred HHHHHHHHHhcccccCCCCCCceEehhHHHHHHHHHhhccc-------eeeecCccchhhhHhhhhcCCeEEEEccCCCC
Q 038494 459 VDALIDNLKASCLLLDGDAEDEVKMHDVIHVVAVSIASEKL-------MFSIPNVTNLKEEIEKIIQKGAIAISIPYGDI 531 (1209)
Q Consensus 459 ~~~~~~~L~~~~ll~~~~~~~~~~mHdlv~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~ 531 (1209)
....++.|++++|++.. .++|.|||++|++++.++.++. +++... ....-........+++.+++....+
T Consensus 468 ~~~~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~-di~~vl~~~~g~~~v~~i~l~~~~~ 544 (1153)
T PLN03210 468 VNIGLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAK-DICDVLEDNTGTKKVLGITLDIDEI 544 (1153)
T ss_pred chhChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHH-HHHHHHHhCcccceeeEEEeccCcc
Confidence 11247789999999765 3579999999999999987652 211110 0000011123346788888876655
Q ss_pred ccCCC----cCCCCCccEEEeccCC-----CcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCccc
Q 038494 532 QELPE----RLECPQLKLLLLLANG-----DSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQL 602 (1209)
Q Consensus 532 ~~~~~----~~~~~~L~~L~l~~~~-----~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l 602 (1209)
..+.- ...+++|+.|.+..+. .....+|..+..-...||+|.+.++.++.+|..+ ...+|+.|++.+|.+
T Consensus 545 ~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l 623 (1153)
T PLN03210 545 DELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKL 623 (1153)
T ss_pred ceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccc
Confidence 44322 2368899998886532 0123455544322356999999999888898877 578899999999988
Q ss_pred CCc-ccccCCCCCCEEEccCC-CCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCC
Q 038494 603 EDV-AAIGQLKKLEILSFRYS-DIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGG 680 (1209)
Q Consensus 603 ~~l-~~i~~L~~L~~L~l~~~-~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 680 (1209)
..+ .++..+++|++|+++++ .+..+| .+..+++|++|++++|..+..+|.. ++++++|+.|++++|...
T Consensus 624 ~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L------- 694 (1153)
T PLN03210 624 EKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENL------- 694 (1153)
T ss_pred cccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCc-------
Confidence 888 77888999999999886 466776 4788899999999998888888765 888999999998876310
Q ss_pred CccchhhhCCCCCCCEEEeeccCC-CCCCcccccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhhhHHHHHH
Q 038494 681 SNASLAELKGLSKLTTLEIQVQDA-QMLPQDLVFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLLENYGMKM 759 (1209)
Q Consensus 681 ~~~~l~~L~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~ 759 (1209)
.. +..-..+++|+.|+++++.. ..+|. ...+|+.
T Consensus 695 -~~-Lp~~i~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~----------------------------------------- 729 (1153)
T PLN03210 695 -EI-LPTGINLKSLYRLNLSGCSRLKSFPD--ISTNISW----------------------------------------- 729 (1153)
T ss_pred -Cc-cCCcCCCCCCCEEeCCCCCCcccccc--ccCCcCe-----------------------------------------
Confidence 00 11111567777777766532 11111 0122332
Q ss_pred HhcccceeeeccccccccccccccCCCCccCCcEEEEecccCceeeeccCC---ccccccCCcccEEecccccccchhcc
Q 038494 760 LLKLTEDIRLEELTGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVG---RVHRKVFPLLESLSLYKLINLEAICH 836 (1209)
Q Consensus 760 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~l~~~~~ 836 (1209)
|.+.+.. .. .++....+++|++|.+.++.....+ .... ......+++|+.|++++|+.+..++.
T Consensus 730 -------L~L~~n~-i~----~lP~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~ 796 (1153)
T PLN03210 730 -------LDLDETA-IE----EFPSNLRLENLDELILCEMKSEKLW-ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS 796 (1153)
T ss_pred -------eecCCCc-cc----cccccccccccccccccccchhhcc-ccccccchhhhhccccchheeCCCCCCccccCh
Confidence 2222211 11 1111123445555555443321100 0000 00112245677777777665555433
Q ss_pred cccccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEecccccccccccCCCCCCccccccccccCCCCCCCcc
Q 038494 837 SQLREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKPTTSLGFNEIIADDDTAPKVG 916 (1209)
Q Consensus 837 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 916 (1209)
. .+.+++|+.|+|++|++++.+|... ++++|+.|++++|..+..++.
T Consensus 797 s----i~~L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~p~-------------------------- 843 (1153)
T PLN03210 797 S----IQNLHKLEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLRTFPD-------------------------- 843 (1153)
T ss_pred h----hhCCCCCCEEECCCCCCcCeeCCCC---CccccCEEECCCCCccccccc--------------------------
Confidence 2 1456777777777777777766521 567777777777766554321
Q ss_pred CccccceEeeccccchhhhhccccccccccccccccchhhhhccCCcccccccccccccCCCcceEeeccCCCcccc
Q 038494 917 IPSSLVNLKVSKCQKIEEIVGHVGEEVKENRIAFSELKVLILNYLSRLTSFCLENYTLEFPSLERVSMIRCPNMKTF 993 (1209)
Q Consensus 917 ~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l 993 (1209)
.+.+|+.|++.++ .++.+|. .+..+++|+.|++++|+++..++... ..+++|+.+++++|++|+.+
T Consensus 844 ~~~nL~~L~Ls~n-~i~~iP~--------si~~l~~L~~L~L~~C~~L~~l~~~~--~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 844 ISTNISDLNLSRT-GIEEVPW--------WIEKFSNLSFLDMNGCNNLQRVSLNI--SKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred cccccCEeECCCC-CCccChH--------HHhcCCCCCEEECCCCCCcCccCccc--ccccCCCeeecCCCcccccc
Confidence 2245666666654 2332222 23456777777777777777664432 24667777777777777643
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.9e-38 Score=352.16 Aligned_cols=274 Identities=32% Similarity=0.559 Sum_probs=220.3
Q ss_pred HHHHHHHHHHHHhC--CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCC-
Q 038494 164 RMKLFQDVVEALRN--DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFD- 240 (1209)
Q Consensus 164 R~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~- 240 (1209)
|+.++++|.++|.+ ++.++|+|+||||+||||||++++++...+.+|+.++|+.++...+...+++.|++.++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999997 788999999999999999999999997777889999999999999999999999999988743
Q ss_pred --CCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCccccccccCCcEEEEeccchhhhcccCCcceE
Q 038494 241 --LNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLLTNDMNSQKI 318 (1209)
Q Consensus 241 --~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~~~~ 318 (1209)
...+.......+.+.+. ++++||||||||+...|+.+...++... .|++||||||+..++.........
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~--------~~~kilvTTR~~~v~~~~~~~~~~ 151 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFS--------SGSKILVTTRDRSVAGSLGGTDKV 151 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHH--------SS-EEEEEESCGGGGTTHHSCEEE
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccccc--------cccccccccccccccccccccccc
Confidence 23444666777777776 6799999999999999988877766555 799999999999887543333789
Q ss_pred EEcCCCCHHHHHHHHHHHhCCCC--CCCcchHHHHHHHHHhCCChhHHHHHHHHHhcC-ChhHHHHHHHHHhcCCCcccc
Q 038494 319 FLIEVLSKEEALQFFEKIVGNSA--KASAFQPLADEIVGKCGGLPVALSTVANALKNK-KLPVWKDALTQLRNSNPREIH 395 (1209)
Q Consensus 319 ~~l~~L~~~e~~~lf~~~~~~~~--~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~-~~~~w~~~~~~l~~~~~~~~~ 395 (1209)
+++++|+.+||++||.+.++... ..+..++.+++|+++|+|+||||+++|++|+.+ +..+|+.+++++...... ..
T Consensus 152 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~ 230 (287)
T PF00931_consen 152 IELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SR 230 (287)
T ss_dssp EECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 99999999999999999997433 456677899999999999999999999999644 778999999988766532 22
Q ss_pred CccccceeeeEEecccCCchhHHHHHHHhcccCcCccccHHHHHHhhh--hhccc
Q 038494 396 GMDANVCSSIELSYNFLESDEAKSLFLLCTLFGEGTPIQVASLLRYGK--GLFKN 448 (1209)
Q Consensus 396 ~~~~~v~~~l~~sy~~L~~~~~k~c~~~~s~fp~~~~i~~~~li~~~~--g~i~~ 448 (1209)
+....+..++.+||+.||++ +|+||.|||+||+++.|+++.++++|. |++..
T Consensus 231 ~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 231 DYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp GSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 35677899999999999997 999999999999999999999999985 67653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=4.1e-28 Score=317.34 Aligned_cols=511 Identities=17% Similarity=0.144 Sum_probs=294.5
Q ss_pred CCeEEEEccCCCCccCC-Cc-CCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccc-cccccccCCCCCcEE
Q 038494 519 KGAIAISIPYGDIQELP-ER-LECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFS-SLSSSLGHLINLQTL 595 (1209)
Q Consensus 519 ~~~r~l~l~~~~~~~~~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~L~~L 595 (1209)
.+++.+.+.++.+.... .. ..+++|++|++++|. ....+|..++..+++||+|+|++|.+. .+|. +.+.+|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc-cCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 47899999988766433 22 378999999999885 334688888889999999999999987 4553 578999999
Q ss_pred eccCcccCCc--ccccCCCCCCEEEccCCCCC-ccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCC
Q 038494 596 CLDWCQLEDV--AAIGQLKKLEILSFRYSDIK-QLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFP 672 (1209)
Q Consensus 596 ~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~-~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~ 672 (1209)
++++|.+... ..++++++|++|++++|.+. .+|..++++++|++|++++|.....+| ..++++++|++|++++|..
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCccEEECcCCcc
Confidence 9999998644 67999999999999999876 788899999999999999954433444 4589999999999987642
Q ss_pred ccccccCCCccchhhhCCCCCCCEEEeeccCCC-CCCccc-ccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcch
Q 038494 673 QWDKVEGGSNASLAELKGLSKLTTLEIQVQDAQ-MLPQDL-VFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVST 750 (1209)
Q Consensus 673 ~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~ 750 (1209)
. ......+..+++|+.|+++.+... .+|..+ ...+|+.|.+..+... .
T Consensus 225 ~--------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~---------------------~- 274 (968)
T PLN00113 225 S--------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS---------------------G- 274 (968)
T ss_pred C--------CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee---------------------c-
Confidence 1 123445788899999999887654 233322 3445555544321100 0
Q ss_pred hhhHHHHHHHhcccceeeeccccccccccccccCCCCccCCcEEEEecccCceeeeccCCccccccCCcccEEecccccc
Q 038494 751 LLENYGMKMLLKLTEDIRLEELTGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLIN 830 (1209)
Q Consensus 751 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 830 (1209)
..+..+ ..+++|+.|++.++......+. .+..+++|+.|++.++.....++. ....+++|+.|+++++.-
T Consensus 275 -~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~l~~n~~~~~~~~-----~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 275 -PIPPSI-FSLQKLISLDLSDNSLSGEIPE---LVIQLQNLEILHLFSNNFTGKIPV-----ALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred -cCchhH-hhccCcCEEECcCCeeccCCCh---hHcCCCCCcEEECCCCccCCcCCh-----hHhcCCCCCEEECcCCCC
Confidence 001111 1234566666654432222211 134566677777766543221110 123456666776666432
Q ss_pred cchhcccccccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEecccccccccccCCCCCCccccccccccCCC
Q 038494 831 LEAICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKPTTSLGFNEIIADDD 910 (1209)
Q Consensus 831 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1209)
...++. ..+.+++|+.|++++|.-...+|. .+..+++|+.|++++|.-...+
T Consensus 345 ~~~~p~----~l~~~~~L~~L~Ls~n~l~~~~p~--~~~~~~~L~~L~l~~n~l~~~~---------------------- 396 (968)
T PLN00113 345 SGEIPK----NLGKHNNLTVLDLSTNNLTGEIPE--GLCSSGNLFKLILFSNSLEGEI---------------------- 396 (968)
T ss_pred cCcCCh----HHhCCCCCcEEECCCCeeEeeCCh--hHhCcCCCCEEECcCCEecccC----------------------
Confidence 111110 113456666676666533323332 3344566666666655321111
Q ss_pred CCCCccCccccceEeeccccchhhhhccccccccccccccccchhhhhccCCcccccccccccccCCCcceEeeccCCCc
Q 038494 911 TAPKVGIPSSLVNLKVSKCQKIEEIVGHVGEEVKENRIAFSELKVLILNYLSRLTSFCLENYTLEFPSLERVSMIRCPNM 990 (1209)
Q Consensus 911 ~~~~l~~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L 990 (1209)
+..+..+++|+.|++.+|.....++. ....+++|+.|+++++.-...++.. ...+++|+.|++++|.-.
T Consensus 397 -p~~~~~~~~L~~L~L~~n~l~~~~p~--------~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 397 -PKSLGACRSLRRVRLQDNSFSGELPS--------EFTKLPLVYFLDISNNNLQGRINSR--KWDMPSLQMLSLARNKFF 465 (968)
T ss_pred -CHHHhCCCCCCEEECcCCEeeeECCh--------hHhcCCCCCEEECcCCcccCccChh--hccCCCCcEEECcCceee
Confidence 11234456677777776653322211 2234566666666665432222111 123566777777776544
Q ss_pred cccccCccccCCCcccccccccccccccccccccchhhhh--hhhhhccccccceEEeeccCCceeeccCCCCCcccCCC
Q 038494 991 KTFSQGILSIPKPCKVQVTEKEEGELHHWEGNNLNSIMQK--YYKEMIGFRDIWYLQLSHFPRLKEIWHGQALPVSFFNN 1068 (1209)
Q Consensus 991 ~~l~~~~~~~~~p~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~l~~ 1068 (1209)
.. +|... ..++|+.|++++|... ....+..+++|+.|++++|.-...++ ..+..+++
T Consensus 466 ~~---------~p~~~--------~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~ 524 (968)
T PLN00113 466 GG---------LPDSF--------GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP----DELSSCKK 524 (968)
T ss_pred ee---------cCccc--------ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC----hHHcCccC
Confidence 32 22111 1355666666666542 12233455666666666643222221 12445566
Q ss_pred ccEEEEecCCCCccccchhhHhhhccCcEEEEccCCchhhhhhcccccccccCCCcccccccccccccccccccccc
Q 038494 1069 LARLVVDDCTNMSSAIPANLLRCLNNLRRLEVRNCDSLEEVLRLEELNADKEHIGPMFPKLSNLRLIDLPKLKRFCN 1145 (1209)
Q Consensus 1069 L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~ 1145 (1209)
|++|++++|. +....|.. +.++++|+.|++++|.-...+|.. +..+++|+.|++++|+-...+|.
T Consensus 525 L~~L~Ls~N~-l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 525 LVSLDLSHNQ-LSGQIPAS-FSEMPVLSQLDLSQNQLSGEIPKN----------LGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CCEEECCCCc-ccccCChh-HhCcccCCEEECCCCcccccCChh----------HhcCcccCEEeccCCcceeeCCC
Confidence 6666666543 33323433 456666666666666622233221 12455666666666554444543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=8.1e-27 Score=305.10 Aligned_cols=516 Identities=15% Similarity=0.071 Sum_probs=355.4
Q ss_pred CCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccc-ccccccc-CCCCCcEEeccCcccCCcccccCCCCCCEEE
Q 038494 541 PQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFS-SLSSSLG-HLINLQTLCLDWCQLEDVAAIGQLKKLEILS 618 (1209)
Q Consensus 541 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~-~l~~L~~L~l~~~~l~~l~~i~~L~~L~~L~ 618 (1209)
.+++.|+++++. +.......|..+++|++|+|++|.+. .+|..+. .+.+|++|++++|.+......+.+++|++|+
T Consensus 69 ~~v~~L~L~~~~--i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKN--ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCC--ccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEE
Confidence 578999998874 33334556789999999999999997 7888665 9999999999999987663346799999999
Q ss_pred ccCCCCC-ccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCCCCCEE
Q 038494 619 FRYSDIK-QLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTTL 697 (1209)
Q Consensus 619 l~~~~~~-~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L 697 (1209)
+++|.+. .+|..++++++|++|++++|.....+| ..++++++|++|++++|... ......+.++++|+.|
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~--------~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASNQLV--------GQIPRELGQMKSLKWI 217 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCC-hhhhhCcCCCeeeccCCCCc--------CcCChHHcCcCCccEE
Confidence 9999887 789899999999999999954334444 45899999999999887421 1234567889999999
Q ss_pred EeeccCCC-CCCccc-ccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhhhHHHHHHHhcccceeeecccccc
Q 038494 698 EIQVQDAQ-MLPQDL-VFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLLENYGMKMLLKLTEDIRLEELTGV 775 (1209)
Q Consensus 698 ~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 775 (1209)
+++.+... .+|..+ .+.+|+.|.+..+.... ..+. ....+++|+.|.+..+...
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----------------------~~p~-~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG-----------------------PIPS-SLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceecc-----------------------ccCh-hHhCCCCCCEEECcCCeee
Confidence 99988765 344332 45666666654221100 0111 1122456777777654332
Q ss_pred ccccccccCCCCccCCcEEEEecccCceeeeccCCccccccCCcccEEecccccccchhcccccccccccCCccEEEEec
Q 038494 776 QNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLEAICHSQLREDQFFSNLKIIEVES 855 (1209)
Q Consensus 776 ~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 855 (1209)
...+ ..+..+++|++|++++|.....++. ....+++|+.|++.++. +....... ...+++|+.|++++
T Consensus 274 ~~~p---~~l~~l~~L~~L~Ls~n~l~~~~p~-----~~~~l~~L~~L~l~~n~-~~~~~~~~---~~~l~~L~~L~L~~ 341 (968)
T PLN00113 274 GPIP---PSIFSLQKLISLDLSDNSLSGEIPE-----LVIQLQNLEILHLFSNN-FTGKIPVA---LTSLPRLQVLQLWS 341 (968)
T ss_pred ccCc---hhHhhccCcCEEECcCCeeccCCCh-----hHcCCCCCcEEECCCCc-cCCcCChh---HhcCCCCCEEECcC
Confidence 2222 2246688999999988753222211 12457889999998743 33221111 24588999999999
Q ss_pred CCCccccccHHHHhhcccccEEEEecccccccccccCCCCCCccccccccccCCCCCCCccCccccceEeeccccchhhh
Q 038494 856 CDKLKHLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKPTTSLGFNEIIADDDTAPKVGIPSSLVNLKVSKCQKIEEI 935 (1209)
Q Consensus 856 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~sL~~L~l~~c~~l~~~ 935 (1209)
|.-...+|. .+..+++|+.|++++|.-...++ ..+...++|+.|++++|.....+
T Consensus 342 n~l~~~~p~--~l~~~~~L~~L~Ls~n~l~~~~p-----------------------~~~~~~~~L~~L~l~~n~l~~~~ 396 (968)
T PLN00113 342 NKFSGEIPK--NLGKHNNLTVLDLSTNNLTGEIP-----------------------EGLCSSGNLFKLILFSNSLEGEI 396 (968)
T ss_pred CCCcCcCCh--HHhCCCCCcEEECCCCeeEeeCC-----------------------hhHhCcCCCCEEECcCCEecccC
Confidence 854444543 55678899999998774221111 12345578899999988654333
Q ss_pred hccccccccccccccccchhhhhccCCcccccccccccccCCCcceEeeccCCCccccccCccccCCCcccccccccccc
Q 038494 936 VGHVGEEVKENRIAFSELKVLILNYLSRLTSFCLENYTLEFPSLERVSMIRCPNMKTFSQGILSIPKPCKVQVTEKEEGE 1015 (1209)
Q Consensus 936 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~p~~~~~~~~~~~~ 1015 (1209)
+. ....+++|+.|++++|.-...++. ....+++|+.|++++|.-.. ..|.... .
T Consensus 397 p~--------~~~~~~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~---------~~~~~~~-------~ 450 (968)
T PLN00113 397 PK--------SLGACRSLRRVRLQDNSFSGELPS--EFTKLPLVYFLDISNNNLQG---------RINSRKW-------D 450 (968)
T ss_pred CH--------HHhCCCCCCEEECcCCEeeeECCh--hHhcCCCCCEEECcCCcccC---------ccChhhc-------c
Confidence 22 334688999999998874443322 22468899999999875332 1222211 4
Q ss_pred cccccccccchhhhhh-hhhhccccccceEEeeccCCceeeccCCCCCcccCCCccEEEEecCCCCccccchhhHhhhcc
Q 038494 1016 LHHWEGNNLNSIMQKY-YKEMIGFRDIWYLQLSHFPRLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNN 1094 (1209)
Q Consensus 1016 l~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~ 1094 (1209)
+++|+.|++++|.... .+.....++|+.|++++|.....++ ..+..+++|+.|++++|. +...+|.. +.++++
T Consensus 451 l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~l~~ 524 (968)
T PLN00113 451 MPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVP----RKLGSLSELMQLKLSENK-LSGEIPDE-LSSCKK 524 (968)
T ss_pred CCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccC----hhhhhhhccCEEECcCCc-ceeeCChH-HcCccC
Confidence 7899999999987542 2334466899999999865333322 236678999999999864 44445654 678999
Q ss_pred CcEEEEccCCchhhhhhcccccccccCCCcccccccccccccccccccccccCCCccCCCCccEEeeecCCCccccccc
Q 038494 1095 LRRLEVRNCDSLEEVLRLEELNADKEHIGPMFPKLSNLRLIDLPKLKRFCNFTGNIIELPELRYLTIENCPDMETFISN 1173 (1209)
Q Consensus 1095 L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~l~~l~~L~~L~i~~C~~l~~l~~~ 1173 (1209)
|+.|++++|. ++...+ ..+..+++|+.|++++|+-...+|. .+..+++|+.|++++|+-...+|..
T Consensus 525 L~~L~Ls~N~-l~~~~p---------~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 525 LVSLDLSHNQ-LSGQIP---------ASFSEMPVLSQLDLSQNQLSGEIPK---NLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred CCEEECCCCc-ccccCC---------hhHhCcccCCEEECCCCcccccCCh---hHhcCcccCEEeccCCcceeeCCCc
Confidence 9999999998 543321 2344789999999999765556554 7888999999999999877778754
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=4.7e-20 Score=240.40 Aligned_cols=380 Identities=19% Similarity=0.261 Sum_probs=233.0
Q ss_pred cccChhhhcCCCCCcEEEecCcccc-------cccccccCCC-CCcEEeccCcccCCcccccCCCCCCEEEccCCCCCcc
Q 038494 556 LEISHLFFEGTEDLKVLSLSGIHFS-------SLSSSLGHLI-NLQTLCLDWCQLEDVAAIGQLKKLEILSFRYSDIKQL 627 (1209)
Q Consensus 556 ~~~~~~~~~~l~~Lr~L~L~~~~i~-------~lp~~i~~l~-~L~~L~l~~~~l~~l~~i~~L~~L~~L~l~~~~~~~l 627 (1209)
..+....|.++++|++|.+..+... .+|..+..++ +|++|.+.++.++.+++.....+|+.|+++++.+..+
T Consensus 547 ~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 547 LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccccc
Confidence 4456677899999999998765321 4666666654 5888888888888774434678888888888888888
Q ss_pred chhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCCCCCEEEeeccCCCCC
Q 038494 628 PLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTTLEIQVQDAQML 707 (1209)
Q Consensus 628 p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~ 707 (1209)
|.++..+++|+.|++++|..+..+|. ++.+++|++|++.+|. .|.
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~---------------------~L~------------ 671 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCS---------------------SLV------------ 671 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCC---------------------Ccc------------
Confidence 88888888888888888766666552 5666666666654431 000
Q ss_pred CcccccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhhhHHHHHHHhcccceeeeccccccccccccccCCCC
Q 038494 708 PQDLVFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLLENYGMKMLLKLTEDIRLEELTGVQNVVHELDDGEG 787 (1209)
Q Consensus 708 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 787 (1209)
.++ ..++.
T Consensus 672 ---------------------------------------------------------------------~lp---~si~~ 679 (1153)
T PLN03210 672 ---------------------------------------------------------------------ELP---SSIQY 679 (1153)
T ss_pred ---------------------------------------------------------------------ccc---hhhhc
Confidence 000 01245
Q ss_pred ccCCcEEEEecccCceeeeccCCccccccCCcccEEecccccccchhcccccccccccCCccEEEEecCCCccccccHHH
Q 038494 788 FPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLEAICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSI 867 (1209)
Q Consensus 788 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 867 (1209)
+++|+.|.+++|..++.++.. ..+++|+.|.+++|..+..++ ...++|+.|+++++. ++.+|..
T Consensus 680 L~~L~~L~L~~c~~L~~Lp~~------i~l~sL~~L~Lsgc~~L~~~p-------~~~~nL~~L~L~~n~-i~~lP~~-- 743 (1153)
T PLN03210 680 LNKLEDLDMSRCENLEILPTG------INLKSLYRLNLSGCSRLKSFP-------DISTNISWLDLDETA-IEEFPSN-- 743 (1153)
T ss_pred cCCCCEEeCCCCCCcCccCCc------CCCCCCCEEeCCCCCCccccc-------cccCCcCeeecCCCc-ccccccc--
Confidence 677888888888776655321 136777777777776655432 124567777776653 4555431
Q ss_pred HhhcccccEEEEecccccccccccCCCCCCccccccccccCCCCCCCccCccccceEeeccccchhhhhccccccccccc
Q 038494 868 ARNLLRLQKVKVASCNKLEMTVGPDREKPTTSLGFNEIIADDDTAPKVGIPSSLVNLKVSKCQKIEEIVGHVGEEVKENR 947 (1209)
Q Consensus 868 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~ 947 (1209)
-.+++|+.|.+.+|....-.. ....+.. ...
T Consensus 744 -~~l~~L~~L~l~~~~~~~l~~--------------------------------------~~~~l~~----------~~~ 774 (1153)
T PLN03210 744 -LRLENLDELILCEMKSEKLWE--------------------------------------RVQPLTP----------LMT 774 (1153)
T ss_pred -ccccccccccccccchhhccc--------------------------------------cccccch----------hhh
Confidence 135555555555442110000 0000000 001
Q ss_pred cccccchhhhhccCCcccccccccccccCCCcceEeeccCCCccccccCccccCCCcccccccccccccccccccccchh
Q 038494 948 IAFSELKVLILNYLSRLTSFCLENYTLEFPSLERVSMIRCPNMKTFSQGILSIPKPCKVQVTEKEEGELHHWEGNNLNSI 1027 (1209)
Q Consensus 948 ~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~p~~~~~~~~~~~~l~~L~~L~l~~~ 1027 (1209)
..+++|+.|+|++|+.+..++.. ...+++|+.|++++|.+++.+|.+
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP~s--i~~L~~L~~L~Ls~C~~L~~LP~~------------------------------- 821 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELPSS--IQNLHKLEHLEIENCINLETLPTG------------------------------- 821 (1153)
T ss_pred hccccchheeCCCCCCccccChh--hhCCCCCCEEECCCCCCcCeeCCC-------------------------------
Confidence 12467777777777776666433 235677777777777777633221
Q ss_pred hhhhhhhhccccccceEEeeccCCceeeccCCCCCcccCCCccEEEEecCCCCccccchhhHhhhccCcEEEEccCCchh
Q 038494 1028 MQKYYKEMIGFRDIWYLQLSHFPRLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLRRLEVRNCDSLE 1107 (1209)
Q Consensus 1028 ~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~ 1107 (1209)
..+++|++|++++|.++..++. ..++|+.|+++++ .+.. +|.+ +..+++|+.|++++|++++
T Consensus 822 --------~~L~sL~~L~Ls~c~~L~~~p~-------~~~nL~~L~Ls~n-~i~~-iP~s-i~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 822 --------INLESLESLDLSGCSRLRTFPD-------ISTNISDLNLSRT-GIEE-VPWW-IEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred --------CCccccCEEECCCCCccccccc-------cccccCEeECCCC-CCcc-ChHH-HhcCCCCCEEECCCCCCcC
Confidence 1245566667777776665432 1367888888764 5554 5655 5678888888888888888
Q ss_pred hhhhcccccccccCCCcccccccccccccccccccccccCCC-----------ccCCCCccEEeeecCCCccc
Q 038494 1108 EVLRLEELNADKEHIGPMFPKLSNLRLIDLPKLKRFCNFTGN-----------IIELPELRYLTIENCPDMET 1169 (1209)
Q Consensus 1108 ~l~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~-----------l~~l~~L~~L~i~~C~~l~~ 1169 (1209)
.++.... .+++|+.|.+.+|++|+.++. ... ...+|+...+.+.+|.++..
T Consensus 884 ~l~~~~~----------~L~~L~~L~l~~C~~L~~~~l-~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 884 RVSLNIS----------KLKHLETVDFSDCGALTEASW-NGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred ccCcccc----------cccCCCeeecCCCcccccccC-CCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 8765332 577888888888888876542 110 12344445566677766643
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=2.2e-20 Score=203.32 Aligned_cols=154 Identities=14% Similarity=0.174 Sum_probs=115.1
Q ss_pred hhhcCCeEEEEccCCCCccCCCc----CCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCC
Q 038494 515 KIIQKGAIAISIPYGDIQELPER----LECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLI 590 (1209)
Q Consensus 515 ~~~~~~~r~l~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~ 590 (1209)
..++...+-+..++..++.+... .-.+.-++|++++| ...++...+|.++++|+.+.+.+|.++.+|...+...
T Consensus 48 a~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnN--kl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sg 125 (873)
T KOG4194|consen 48 ATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNN--KLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESG 125 (873)
T ss_pred CcCCCCceeeecCccccccccccccCCcCccceeeeecccc--ccccCcHHHHhcCCcceeeeeccchhhhccccccccc
Confidence 44556666666666666554221 13456678888888 5677777778889999999999999988888777777
Q ss_pred CCcEEeccCcccCCc--ccccCCCCCCEEEccCCCCCccch-hccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEEC
Q 038494 591 NLQTLCLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQLPL-EIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYM 667 (1209)
Q Consensus 591 ~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l 667 (1209)
||+.|+|.+|.|..+ ..+.-++.|+.||++.|.++.+|. .+..=.++++|++++ +.++.+..+.|..+.+|-+|.+
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeec
Confidence 899999999988888 678888888899998888887764 355556788888888 6777776666777777777777
Q ss_pred CCCC
Q 038494 668 GDSF 671 (1209)
Q Consensus 668 ~~~~ 671 (1209)
+.|.
T Consensus 205 srNr 208 (873)
T KOG4194|consen 205 SRNR 208 (873)
T ss_pred ccCc
Confidence 6654
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=3.3e-20 Score=193.44 Aligned_cols=110 Identities=20% Similarity=0.234 Sum_probs=69.8
Q ss_pred hhccccccceEEeeccCCceeeccCCCCCcccCCCccEEEEecCCCCccccchhhHhhhccCcEEEEccCCchhhhhhcc
Q 038494 1034 EMIGFRDIWYLQLSHFPRLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLRRLEVRNCDSLEEVLRLE 1113 (1209)
Q Consensus 1034 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~ 1113 (1209)
.+..+++|..|++++ +-|-+++.+ ++.+..|+.|+++.. ++.. .|.. ..-+..|+.+-++++. +..+++.
T Consensus 430 ~l~~l~kLt~L~L~N-N~Ln~LP~e----~~~lv~Lq~LnlS~N-rFr~-lP~~-~y~lq~lEtllas~nq-i~~vd~~- 499 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSN-NLLNDLPEE----MGSLVRLQTLNLSFN-RFRM-LPEC-LYELQTLETLLASNNQ-IGSVDPS- 499 (565)
T ss_pred HHHhhhcceeeeccc-chhhhcchh----hhhhhhhheeccccc-cccc-chHH-HhhHHHHHHHHhcccc-ccccChH-
Confidence 345677777777776 445555433 445566777777653 4443 3432 1223334444444443 6655432
Q ss_pred cccccccCCCcccccccccccccccccccccccCCCccCCCCccEEeeecCC
Q 038494 1114 ELNADKEHIGPMFPKLSNLRLIDLPKLKRFCNFTGNIIELPELRYLTIENCP 1165 (1209)
Q Consensus 1114 ~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~l~~l~~L~~L~i~~C~ 1165 (1209)
......+|..|++.+ +.++++|. .++++++|+.|.+.|.|
T Consensus 500 --------~l~nm~nL~tLDL~n-Ndlq~IPp---~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 500 --------GLKNMRNLTTLDLQN-NDLQQIPP---ILGNMTNLRHLELDGNP 539 (565)
T ss_pred --------HhhhhhhcceeccCC-CchhhCCh---hhccccceeEEEecCCc
Confidence 334678899999987 78888887 78999999999999865
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.72 E-value=1.3e-19 Score=198.23 Aligned_cols=184 Identities=20% Similarity=0.286 Sum_probs=147.4
Q ss_pred hcCCeEEEEccCCCCccCCCc-CCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEE
Q 038494 517 IQKGAIAISIPYGDIQELPER-LECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTL 595 (1209)
Q Consensus 517 ~~~~~r~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L 595 (1209)
..+++.|+++..|.+..+... ..++.||++.+..|......+|+.+| .++.|.+||||.|.++..|..+..-+++-+|
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 456888999998887766544 37899999999988777788998886 6999999999999999999999999999999
Q ss_pred eccCcccCCc--ccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCc
Q 038494 596 CLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQ 673 (1209)
Q Consensus 596 ~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 673 (1209)
+|++|.|..+ +-+-+|..|-+||+++|++..+|+.+..|.+|++|.+++ +.+..+....+..+++|++|.+++...
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQLPsmtsL~vLhms~TqR- 209 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSN-NPLNHFQLRQLPSMTSLSVLHMSNTQR- 209 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCC-ChhhHHHHhcCccchhhhhhhcccccc-
Confidence 9999999988 557799999999999999999999999999999999998 555555444455667777887776432
Q ss_pred cccccCCCccchhhhCCCCCCCEEEeeccCCCCCCc
Q 038494 674 WDKVEGGSNASLAELKGLSKLTTLEIQVQDAQMLPQ 709 (1209)
Q Consensus 674 ~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~ 709 (1209)
........+..+.||+.++++.++....|.
T Consensus 210 ------Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPe 239 (1255)
T KOG0444|consen 210 ------TLDNIPTSLDDLHNLRDVDLSENNLPIVPE 239 (1255)
T ss_pred ------hhhcCCCchhhhhhhhhccccccCCCcchH
Confidence 222234456777788888887776654443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=1.7e-20 Score=195.48 Aligned_cols=174 Identities=28% Similarity=0.377 Sum_probs=128.8
Q ss_pred eEEEEccCCCCccCCCcC-CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccC
Q 038494 521 AIAISIPYGDIQELPERL-ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDW 599 (1209)
Q Consensus 521 ~r~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~ 599 (1209)
...+.+..|++..+.+.. .+..+.+|.+++| ....+|+.+ +.+..+..|+.+.+.+..+|+.++.+..|+.|+.++
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n--~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDN--KLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccc--hhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc
Confidence 344556666666554443 6777788888777 456666654 677888888888888888888888888888888888
Q ss_pred cccCCc-ccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCcccccc
Q 038494 600 CQLEDV-AAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVE 678 (1209)
Q Consensus 600 ~~l~~l-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 678 (1209)
|.+.++ ++++.+..|..|+..+|++.++|.++.++.+|..|++.+ +.++..|++.+. ++.|++|+...+.
T Consensus 124 n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~-m~~L~~ld~~~N~------- 194 (565)
T KOG0472|consen 124 NELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIA-MKRLKHLDCNSNL------- 194 (565)
T ss_pred cceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHHH-HHHHHhcccchhh-------
Confidence 888877 888888888888888888888888888888888888888 677778777554 8888888765442
Q ss_pred CCCccchhhhCCCCCCCEEEeeccCCCCCC
Q 038494 679 GGSNASLAELKGLSKLTTLEIQVQDAQMLP 708 (1209)
Q Consensus 679 ~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~ 708 (1209)
......+++.+.+|..|++..+++..+|
T Consensus 195 --L~tlP~~lg~l~~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 195 --LETLPPELGGLESLELLYLRRNKIRFLP 222 (565)
T ss_pred --hhcCChhhcchhhhHHHHhhhcccccCC
Confidence 2233456677777777777776665554
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.70 E-value=4.7e-19 Score=204.11 Aligned_cols=468 Identities=19% Similarity=0.186 Sum_probs=249.4
Q ss_pred cCCCCccCCCcC-CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCc
Q 038494 527 PYGDIQELPERL-ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDV 605 (1209)
Q Consensus 527 ~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l 605 (1209)
++...+-+|... ....+..|++..| .....|-.+..+.-+|+.||+++|.+..+|..|..+.+|+.|+++.|.++..
T Consensus 6 s~~~l~~ip~~i~~~~~~~~ln~~~N--~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~v 83 (1081)
T KOG0618|consen 6 SDEQLELIPEQILNNEALQILNLRRN--SLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSV 83 (1081)
T ss_pred ccccCcccchhhccHHHHHhhhcccc--ccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhC
Confidence 334444444432 2223556666555 2333344445555568888888888888888888888888888888888777
Q ss_pred -ccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccC-----
Q 038494 606 -AAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEG----- 679 (1209)
Q Consensus 606 -~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~----- 679 (1209)
.+++++++|++|.|.+|.+..+|.++..+.+|+.|+++. +.+..+|.- +..++.+..+..++|. .....+.
T Consensus 84 p~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~-N~f~~~Pl~-i~~lt~~~~~~~s~N~-~~~~lg~~~ik~ 160 (1081)
T KOG0618|consen 84 PSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF-NHFGPIPLV-IEVLTAEEELAASNNE-KIQRLGQTSIKK 160 (1081)
T ss_pred chhhhhhhcchhheeccchhhcCchhHHhhhcccccccch-hccCCCchh-HHhhhHHHHHhhhcch-hhhhhccccchh
Confidence 777888888888888888888888888888888888888 566666643 6666666666665541 0000000
Q ss_pred -------CCccchhhhCCCCCCCEEEeeccCCCCCCcccccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhh
Q 038494 680 -------GSNASLAELKGLSKLTTLEIQVQDAQMLPQDLVFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLL 752 (1209)
Q Consensus 680 -------~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~ 752 (1209)
-....+.++..+.+ .|++..+... .-.-....+|+.+... ...+..+.+.
T Consensus 161 ~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~dls~~~~l~~l~c~-----------rn~ls~l~~~--------- 217 (1081)
T KOG0618|consen 161 LDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLDLSNLANLEVLHCE-----------RNQLSELEIS--------- 217 (1081)
T ss_pred hhhhhhhcccchhcchhhhhe--eeecccchhh-hhhhhhccchhhhhhh-----------hcccceEEec---------
Confidence 00000111111111 2232222221 0000011111111000 0000000000
Q ss_pred hHHHHHHHhcccceeeeccccccccccccccCCCCccCCcEEEEecccCceeeeccCCccccccCCcccEEecccccccc
Q 038494 753 ENYGMKMLLKLTEDIRLEELTGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLE 832 (1209)
Q Consensus 753 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 832 (1209)
-++++.|+...+.-.+... -..-.+|++++++... +..+ +.| ...+++|+.+.... +.+.
T Consensus 218 --------g~~l~~L~a~~n~l~~~~~-----~p~p~nl~~~dis~n~-l~~l---p~w--i~~~~nle~l~~n~-N~l~ 277 (1081)
T KOG0618|consen 218 --------GPSLTALYADHNPLTTLDV-----HPVPLNLQYLDISHNN-LSNL---PEW--IGACANLEALNANH-NRLV 277 (1081)
T ss_pred --------CcchheeeeccCcceeecc-----ccccccceeeecchhh-hhcc---hHH--HHhcccceEecccc-hhHH
Confidence 0233444443332221111 1112456666666543 1111 222 24467777777765 5555
Q ss_pred hhcccccccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEecccccccccccCCCCCCccccccccccCCCCC
Q 038494 833 AICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKPTTSLGFNEIIADDDTA 912 (1209)
Q Consensus 833 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1209)
.++... ..+.+|+.|.+..| .++++|+ ....+.+|++|++... ++...+.....
T Consensus 278 ~lp~ri----~~~~~L~~l~~~~n-el~yip~--~le~~~sL~tLdL~~N-~L~~lp~~~l~------------------ 331 (1081)
T KOG0618|consen 278 ALPLRI----SRITSLVSLSAAYN-ELEYIPP--FLEGLKSLRTLDLQSN-NLPSLPDNFLA------------------ 331 (1081)
T ss_pred hhHHHH----hhhhhHHHHHhhhh-hhhhCCC--cccccceeeeeeehhc-cccccchHHHh------------------
Confidence 443332 23567777777776 5777765 4456788888888764 33333221110
Q ss_pred CCccCccccceEeeccccchhhhhccccccccccccccccchhhhhccCCcccccccccccccCCCcceEeeccCCCccc
Q 038494 913 PKVGIPSSLVNLKVSKCQKIEEIVGHVGEEVKENRIAFSELKVLILNYLSRLTSFCLENYTLEFPSLERVSMIRCPNMKT 992 (1209)
Q Consensus 913 ~~l~~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~ 992 (1209)
-...+|..|..+.. .++..+ ......++.|+.|++.++.--.+.++ . ...++.|+.|++++. .|.
T Consensus 332 ---v~~~~l~~ln~s~n-~l~~lp-------~~~e~~~~~Lq~LylanN~Ltd~c~p-~-l~~~~hLKVLhLsyN-rL~- 396 (1081)
T KOG0618|consen 332 ---VLNASLNTLNVSSN-KLSTLP-------SYEENNHAALQELYLANNHLTDSCFP-V-LVNFKHLKVLHLSYN-RLN- 396 (1081)
T ss_pred ---hhhHHHHHHhhhhc-cccccc-------cccchhhHHHHHHHHhcCcccccchh-h-hccccceeeeeeccc-ccc-
Confidence 00011222332221 111111 01123567888888887553332222 1 135788888888885 344
Q ss_pred cccCccccCCCcccccccccccccccccccccchhhhhhh-hhhccccccceEEeeccCCceeeccCCCCCcccCCCccE
Q 038494 993 FSQGILSIPKPCKVQVTEKEEGELHHWEGNNLNSIMQKYY-KEMIGFRDIWYLQLSHFPRLKEIWHGQALPVSFFNNLAR 1071 (1209)
Q Consensus 993 l~~~~~~~~~p~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~l~~L~~ 1071 (1209)
.+|...+. +++.|+.|++++|..... .....++.|++|-..+ +.+..++ + +..++.|+.
T Consensus 397 --------~fpas~~~------kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e----~~~l~qL~~ 456 (1081)
T KOG0618|consen 397 --------SFPASKLR------KLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-E----LAQLPQLKV 456 (1081)
T ss_pred --------cCCHHHHh------chHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC-Cceeech-h----hhhcCcceE
Confidence 45554444 678888888888876543 3455778888886654 5666654 2 556788888
Q ss_pred EEEecCCCCcccc-chhhHhhhccCcEEEEccCCch
Q 038494 1072 LVVDDCTNMSSAI-PANLLRCLNNLRRLEVRNCDSL 1106 (1209)
Q Consensus 1072 L~i~~c~~l~~~~-~~~~~~~l~~L~~L~i~~c~~l 1106 (1209)
+|+ +|+++.... |... .. ++|++|+++++..+
T Consensus 457 lDl-S~N~L~~~~l~~~~-p~-p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 457 LDL-SCNNLSEVTLPEAL-PS-PNLKYLDLSGNTRL 489 (1081)
T ss_pred Eec-ccchhhhhhhhhhC-CC-cccceeeccCCccc
Confidence 888 467766432 2211 11 68888888888753
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.67 E-value=2.9e-17 Score=179.37 Aligned_cols=338 Identities=16% Similarity=0.186 Sum_probs=202.3
Q ss_pred hcCCeEEEEccCCCCccCCCcC-CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcE
Q 038494 517 IQKGAIAISIPYGDIQELPERL-ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQT 594 (1209)
Q Consensus 517 ~~~~~r~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~ 594 (1209)
..+++..+++..|.+..+|... ...++..|++.+| .+.++....++.++.||+||||.|.|+.+|. ++..-.++++
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N--~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN--LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKK 177 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeecc--ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence 3566777777777777888776 3556888888777 5666666667778888888888888887765 5666678888
Q ss_pred EeccCcccCCc--ccccCCCCCCEEEccCCCCCccchh-ccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCC
Q 038494 595 LCLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQLPLE-IGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSF 671 (1209)
Q Consensus 595 L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~ 671 (1209)
|+|++|.|+.+ ..|.++.+|-+|.+++|+++.+|.. +.+|++|+.|++.. +.++.+..-.|..|++|+.|.+..|.
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLKLQRND 256 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhhhhhcC
Confidence 88888888877 6777888888888888888888754 55588888888877 56665544446777777777776553
Q ss_pred CccccccCCCccchhhhCCCCCCCEEEeeccCCCCCCcc--cccCCCCeEEEEEcccCccc---cCCCCCccEEEEecCC
Q 038494 672 PQWDKVEGGSNASLAELKGLSKLTTLEIQVQDAQMLPQD--LVFVELPRYRICIGEAWGIW---RANSETSRLVQLHGLE 746 (1209)
Q Consensus 672 ~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~l~l~~l~ 746 (1209)
+.--. -+.+-.+.++++|++..+.+...... ..+..|+.|.++.+...+.- ......+..+.|..
T Consensus 257 I~kL~--------DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-- 326 (873)
T KOG4194|consen 257 ISKLD--------DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-- 326 (873)
T ss_pred ccccc--------CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc--
Confidence 21100 01233455666666666655554443 24455555555433322110 11122222222222
Q ss_pred CcchhhhHHHHHHHhcccceeeeccccccccccccccCCCCccCCcEEEEecccCceeeeccCCccccccCCcccEEecc
Q 038494 747 NVSTLLENYGMKMLLKLTEDIRLEELTGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLY 826 (1209)
Q Consensus 747 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 826 (1209)
......+.+-...+..|+.|.+.... ++.+-.. .+.++.+|++|+++++.-.-.+.+ ......++++|++|.+.
T Consensus 327 -N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~--af~~lssL~~LdLr~N~ls~~IED--aa~~f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 327 -NRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEG--AFVGLSSLHKLDLRSNELSWCIED--AAVAFNGLPSLRKLRLT 400 (873)
T ss_pred -cccccCChhHHHHHHHhhhhcccccc-hHHHHhh--HHHHhhhhhhhcCcCCeEEEEEec--chhhhccchhhhheeec
Confidence 12122333444445666666665422 2221111 134577788888876543222211 11123447888888888
Q ss_pred cccccchhcccccccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEe
Q 038494 827 KLINLEAICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVA 880 (1209)
Q Consensus 827 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~ 880 (1209)
+ ++++.++..++.. ++.|++|++.+.+ +.++-+. .+.++ .|++|.+.
T Consensus 401 g-Nqlk~I~krAfsg---l~~LE~LdL~~Na-iaSIq~n-AFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 401 G-NQLKSIPKRAFSG---LEALEHLDLGDNA-IASIQPN-AFEPM-ELKELVMN 447 (873)
T ss_pred C-ceeeecchhhhcc---CcccceecCCCCc-ceeeccc-ccccc-hhhhhhhc
Confidence 7 7788777766644 8888888887753 3333221 22333 66666554
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.64 E-value=9.4e-18 Score=183.78 Aligned_cols=124 Identities=23% Similarity=0.263 Sum_probs=91.5
Q ss_pred EEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCc-ccccCCCCCCEEEccCCC
Q 038494 545 LLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDV-AAIGQLKKLEILSFRYSD 623 (1209)
Q Consensus 545 ~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l-~~i~~L~~L~~L~l~~~~ 623 (1209)
-.++++|+......|.++ ..++.++.|.|..+.+..+|+.++.|.+|++|.+.+|++..+ ..+..|+.|+.++++.|+
T Consensus 11 GvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~ 89 (1255)
T KOG0444|consen 11 GVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNN 89 (1255)
T ss_pred cccccCCcCCCCcCchhH-HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccc
Confidence 334444443334445444 678888888888888888888888888888888888887777 677788888888888886
Q ss_pred CC--ccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCC
Q 038494 624 IK--QLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSF 671 (1209)
Q Consensus 624 ~~--~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~ 671 (1209)
++ .+|..|-+|..|..|++++ +.++.+|.+ +....++-.|++++|.
T Consensus 90 LKnsGiP~diF~l~dLt~lDLSh-NqL~EvP~~-LE~AKn~iVLNLS~N~ 137 (1255)
T KOG0444|consen 90 LKNSGIPTDIFRLKDLTILDLSH-NQLREVPTN-LEYAKNSIVLNLSYNN 137 (1255)
T ss_pred cccCCCCchhcccccceeeecch-hhhhhcchh-hhhhcCcEEEEcccCc
Confidence 66 6788888888888888888 677777765 6777777777776653
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.62 E-value=2.2e-17 Score=190.59 Aligned_cols=99 Identities=24% Similarity=0.315 Sum_probs=48.4
Q ss_pred CcEEEecCcccccccc-cccCCCCCcEEeccCcccCCc-ccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCC
Q 038494 569 LKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWCQLEDV-AAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCS 646 (1209)
Q Consensus 569 Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~l~~l-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~ 646 (1209)
+..|+++.|.+-..|- .+.+..+|+.|++++|.+... ..++.+.+|+.|+++.|.+..+|.+++++.+|++|.+.+ +
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n 101 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-N 101 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-c
Confidence 5555555554443331 122333355555555554444 445555555555555555555555555555555555544 4
Q ss_pred CCcccCchhhcCCCCCcEEECCC
Q 038494 647 SLVVIAPNVISKFSRLEELYMGD 669 (1209)
Q Consensus 647 ~l~~~~~~~l~~L~~L~~L~l~~ 669 (1209)
.+...|.+ +..+.+|+.|+++.
T Consensus 102 ~l~~lP~~-~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 102 RLQSLPAS-ISELKNLQYLDLSF 123 (1081)
T ss_pred hhhcCchh-HHhhhcccccccch
Confidence 44444332 44555555555544
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.37 E-value=1e-14 Score=134.87 Aligned_cols=166 Identities=24% Similarity=0.391 Sum_probs=138.9
Q ss_pred CccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCc-cccc
Q 038494 531 IQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDV-AAIG 609 (1209)
Q Consensus 531 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l-~~i~ 609 (1209)
+.+++....++++..|.+++| ....+|+.+ ..+++|.+|++++|+++++|.+|+.++.|+.|++.-|++..+ .+||
T Consensus 23 f~~~~gLf~~s~ITrLtLSHN--Kl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHN--KLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred HhhcccccchhhhhhhhcccC--ceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 345666667778888888887 466667665 789999999999999999999999999999999999998777 8999
Q ss_pred CCCCCCEEEccCCCCC--ccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhh
Q 038494 610 QLKKLEILSFRYSDIK--QLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAE 687 (1209)
Q Consensus 610 ~L~~L~~L~l~~~~~~--~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 687 (1209)
.++-|++||+++|++. .+|..+-.++.|+.|++++ +.+..+|++ ++++++||.|.+..+. ......+
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdnd---------ll~lpke 168 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDND---------LLSLPKE 168 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCc---------hhhCcHH
Confidence 9999999999998776 7898888889999999998 778888877 8999999999887652 2334567
Q ss_pred hCCCCCCCEEEeeccCCCCCCcc
Q 038494 688 LKGLSKLTTLEIQVQDAQMLPQD 710 (1209)
Q Consensus 688 L~~l~~L~~L~l~~~~~~~~~~~ 710 (1209)
++.+.+|++|+|.++....+|..
T Consensus 169 ig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 169 IGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred HHHHHHHHHHhcccceeeecChh
Confidence 88889999999999988887765
No 16
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.36 E-value=1.7e-11 Score=160.20 Aligned_cols=297 Identities=16% Similarity=0.235 Sum_probs=180.9
Q ss_pred cccccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCC-cCHHHHHHHHHH
Q 038494 155 AKDFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTEN-PDVQKIQDKLAS 233 (1209)
Q Consensus 155 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~l~~~i~~ 233 (1209)
|.....++-|....+.+.+ ....+++.|+|++|.||||++.++++. ++.++|+++... .+...+...++.
T Consensus 10 p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHH
Confidence 3335567788766555543 245689999999999999999998853 236899999744 466667677776
Q ss_pred HhCCCCCC-------------CCChHHHHHHHHHHHhc-CCeEEEEEeCCCcccCc--c-ccCCCCCCCCccccccccCC
Q 038494 234 DLDLNFDL-------------NDSKPHRAKQLCQRLTK-EKRVLIILDNIWKKLGL--E-EIGIPFGDVDEKDRKQDLRR 296 (1209)
Q Consensus 234 ~l~~~~~~-------------~~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~~~--~-~l~~~~~~~~~~~~~~~~~~ 296 (1209)
.++..... ..........+...+.. +.+++||+||+...+.- . .+...+.... .+
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~--------~~ 152 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQP--------EN 152 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCC--------CC
Confidence 66421111 01223344455566654 57899999999875311 1 1211111111 56
Q ss_pred cEEEEeccchhhhcc-cC-CcceEEEcC----CCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 038494 297 RTIILTSRSKHLLTN-DM-NSQKIFLIE----VLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVANA 370 (1209)
Q Consensus 297 s~ilvTtR~~~v~~~-~~-~~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~ 370 (1209)
.++|||||....... .. ......++. +|+.+|+.++|....+... ..+.+.+|.+.|+|+|+++..++..
T Consensus 153 ~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~ 228 (903)
T PRK04841 153 LTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALS 228 (903)
T ss_pred eEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHH
Confidence 788899998532210 00 112244555 8999999999988765322 2456779999999999999999877
Q ss_pred HhcCChhHHHHHHHHHhcCCCccccCccccceeee-EEecccCCchhHHHHHHHhcccCcCccccHHHHHHhhhhhcccc
Q 038494 371 LKNKKLPVWKDALTQLRNSNPREIHGMDANVCSSI-ELSYNFLESDEAKSLFLLCTLFGEGTPIQVASLLRYGKGLFKNV 449 (1209)
Q Consensus 371 l~~~~~~~w~~~~~~l~~~~~~~~~~~~~~v~~~l-~~sy~~L~~~~~k~c~~~~s~fp~~~~i~~~~li~~~~g~i~~~ 449 (1209)
+...... .......+.... ...+...+ ...|+.||++ .+.++...|+++ .|+.+.+-.+ .|
T Consensus 229 ~~~~~~~-~~~~~~~~~~~~-------~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~---~~~~~l~~~l-~~----- 290 (903)
T PRK04841 229 ARQNNSS-LHDSARRLAGIN-------ASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR---SMNDALIVRV-TG----- 290 (903)
T ss_pred HhhCCCc-hhhhhHhhcCCC-------chhHHHHHHHHHHhcCCHH-HHHHHHHhcccc---cCCHHHHHHH-cC-----
Confidence 7543210 011111111000 11122222 2236789998 999999999986 3454433222 11
Q ss_pred ccHHHHHHHHHHHHHHHHhcccccC-C-CCCCceEehhHHHHHHHHHhh
Q 038494 450 RTLENARNRVDALIDNLKASCLLLD-G-DAEDEVKMHDVIHVVAVSIAS 496 (1209)
Q Consensus 450 ~~~~~~~~~~~~~~~~L~~~~ll~~-~-~~~~~~~mHdlv~~~~~~~~~ 496 (1209)
..+ ..+.+++|.+.+++.. . +...+|..|+++|+++.....
T Consensus 291 --~~~----~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 291 --EEN----GQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred --CCc----HHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 111 2346788888888653 2 234579999999999987763
No 17
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.26 E-value=3.4e-10 Score=131.88 Aligned_cols=296 Identities=18% Similarity=0.186 Sum_probs=191.2
Q ss_pred cccccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-CHHHHHHHHHH
Q 038494 155 AKDFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-DVQKIQDKLAS 233 (1209)
Q Consensus 155 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~ 233 (1209)
|......+-|...++.+.. ....+.+.|..++|.||||++.+.+..... =..+.|+++.+.. ++..+...++.
T Consensus 15 P~~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi~ 88 (894)
T COG2909 15 PVRPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLIA 88 (894)
T ss_pred CCCcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHHH
Confidence 3335567777555444443 247899999999999999999999883332 3468999998654 68888888888
Q ss_pred HhCCCCCCC-------------CChHHHHHHHHHHHhc-CCeEEEEEeCCCccc------CccccCCCCCCCCccccccc
Q 038494 234 DLDLNFDLN-------------DSKPHRAKQLCQRLTK-EKRVLIILDNIWKKL------GLEEIGIPFGDVDEKDRKQD 293 (1209)
Q Consensus 234 ~l~~~~~~~-------------~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~------~~~~l~~~~~~~~~~~~~~~ 293 (1209)
.++...+.. .......+.+..++.. .++..+|+||..-.. ..+.+....|
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P---------- 158 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP---------- 158 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC----------
Confidence 776433222 1224455667776653 367899999976442 2333333333
Q ss_pred cCCcEEEEeccchhhhccc--CCcceEEEcC----CCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 294 LRRRTIILTSRSKHLLTND--MNSQKIFLIE----VLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 294 ~~~s~ilvTtR~~~v~~~~--~~~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
.+-.+|||||........ .-....++++ .|+.||+.++|....+..- .+..++.+.+..+|.+-|+..+
T Consensus 159 -~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L----d~~~~~~L~~~teGW~~al~L~ 233 (894)
T COG2909 159 -ENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL----DAADLKALYDRTEGWAAALQLI 233 (894)
T ss_pred -CCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC----ChHHHHHHHhhcccHHHHHHHH
Confidence 678899999998643211 0111233333 4899999999998765322 3456779999999999999999
Q ss_pred HHHHhcC-ChhHHHHHHHHHhcCCCccccCccccce-eeeEEecccCCchhHHHHHHHhcccCcCccccHHHHHHhhhhh
Q 038494 368 ANALKNK-KLPVWKDALTQLRNSNPREIHGMDANVC-SSIELSYNFLESDEAKSLFLLCTLFGEGTPIQVASLLRYGKGL 445 (1209)
Q Consensus 368 ~~~l~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~v~-~~l~~sy~~L~~~~~k~c~~~~s~fp~~~~i~~~~li~~~~g~ 445 (1209)
+-.+++. +.+.-...+. +..+-+. ....--++.||++ +|..+..+|+++. |. +.|+..-.
T Consensus 234 aLa~~~~~~~~q~~~~Ls-----------G~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~---f~-~eL~~~Lt-- 295 (894)
T COG2909 234 ALALRNNTSAEQSLRGLS-----------GAASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSR---FN-DELCNALT-- 295 (894)
T ss_pred HHHccCCCcHHHHhhhcc-----------chHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHH---hh-HHHHHHHh--
Confidence 9888833 2222111111 0000000 0111236789998 9999999999876 12 23332211
Q ss_pred ccccccHHHHHHHHHHHHHHHHhcccccC--CCCCCceEehhHHHHHHHHHhhcc
Q 038494 446 FKNVRTLENARNRVDALIDNLKASCLLLD--GDAEDEVKMHDVIHVVAVSIASEK 498 (1209)
Q Consensus 446 i~~~~~~~~~~~~~~~~~~~L~~~~ll~~--~~~~~~~~mHdlv~~~~~~~~~~~ 498 (1209)
.++.....+++|.+++++.. .+...+|+.|.++.||.+.....+
T Consensus 296 ---------g~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 296 ---------GEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred ---------cCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 12334457889999998863 356779999999999988776653
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.21 E-value=4.3e-13 Score=142.30 Aligned_cols=299 Identities=16% Similarity=0.181 Sum_probs=161.1
Q ss_pred CCcEEEEecccCceeeeccCCccccccCCcccEEecccccccchhcccccccccccCCccEEEEecCCCccccccHHHHh
Q 038494 790 RLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLEAICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSIAR 869 (1209)
Q Consensus 790 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 869 (1209)
.|+.|.+.||..... .........+|+++.|.+.+|.++++-....+. ..+++|+.|.+..|+.+++..-.....
T Consensus 139 ~lk~LSlrG~r~v~~---sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla--~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGD---SSLRTFASNCPNIEHLALYGCKKITDSSLLSLA--RYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred ccccccccccccCCc---chhhHHhhhCCchhhhhhhcceeccHHHHHHHH--HhcchhhhhhhcccchhHHHHHHHHHH
Confidence 467777777764321 111113345666666666666666555443332 246666666666666666543322344
Q ss_pred hcccccEEEEecccccccccccCCCCCCccccccccccCCCCCCCccCccccceEeeccccchhhhhccccccccccccc
Q 038494 870 NLLRLQKVKVASCNKLEMTVGPDREKPTTSLGFNEIIADDDTAPKVGIPSSLVNLKVSKCQKIEEIVGHVGEEVKENRIA 949 (1209)
Q Consensus 870 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 949 (1209)
.+++|+.|+++.|+.+..-. ......+
T Consensus 214 gC~kL~~lNlSwc~qi~~~g-----------------------------------------------------v~~~~rG 240 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNG-----------------------------------------------------VQALQRG 240 (483)
T ss_pred hhhhHHHhhhccCchhhcCc-----------------------------------------------------chHHhcc
Confidence 56666666666665443210 0001112
Q ss_pred cccchhhhhccCCcccccccccccccCCCcceEeeccCCCccccccCccccCCCcccccccccccccccccccccchhhh
Q 038494 950 FSELKVLILNYLSRLTSFCLENYTLEFPSLERVSMIRCPNMKTFSQGILSIPKPCKVQVTEKEEGELHHWEGNNLNSIMQ 1029 (1209)
Q Consensus 950 ~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~p~~~~~~~~~~~~l~~L~~L~l~~~~~ 1029 (1209)
+..++++.+.+|..+..-........++.+..+++..|..+++... .. -...+..||.|..++|..
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~--~~------------i~~~c~~lq~l~~s~~t~ 306 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL--WL------------IACGCHALQVLCYSSCTD 306 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH--HH------------HhhhhhHhhhhcccCCCC
Confidence 3334444444444333221111112233344444445544442110 00 011345666666666655
Q ss_pred hhhhhh----ccccccceEEeeccCCceeeccCCCCCcccCCCccEEEEecCCCCccccchhhHhhhccCcEEEEccCCc
Q 038494 1030 KYYKEM----IGFRDIWYLQLSHFPRLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLRRLEVRNCDS 1105 (1209)
Q Consensus 1030 ~~~~~~----~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~ 1105 (1209)
.....+ .++++|+.|.+..|.++++.... ..-.+.+.|+.+++.+|....+.--.....+|+.|+.|.++.|..
T Consensus 307 ~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft--~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~ 384 (483)
T KOG4341|consen 307 ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT--MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCEL 384 (483)
T ss_pred CchHHHHHHhcCCCceEEEeccccchhhhhhhh--hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhh
Confidence 332222 25678888888888876653211 112356789999998887766532233456789999999999987
Q ss_pred hhhhhhcccccccccCCCcccccccccccccccccccccccCCCccCCCCccEEeeecCCCccc
Q 038494 1106 LEEVLRLEELNADKEHIGPMFPKLSNLRLIDLPKLKRFCNFTGNIIELPELRYLTIENCPDMET 1169 (1209)
Q Consensus 1106 l~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~l~~l~~L~~L~i~~C~~l~~ 1169 (1209)
+++--.-. + .........|..+.+++||.++.--. ..+..++.|+.+++.+|+.+..
T Consensus 385 itD~gi~~----l-~~~~c~~~~l~~lEL~n~p~i~d~~L--e~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 385 ITDEGIRH----L-SSSSCSLEGLEVLELDNCPLITDATL--EHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hhhhhhhh----h-hhccccccccceeeecCCCCchHHHH--HHHhhCcccceeeeechhhhhh
Confidence 66541000 0 01112456788899999998865433 4567888899988888876644
No 19
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.19 E-value=1.8e-09 Score=126.03 Aligned_cols=293 Identities=16% Similarity=0.111 Sum_probs=170.8
Q ss_pred ccchhhHHHHHHHHHHHHh----CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHH
Q 038494 158 FEAFDSRMKLFQDVVEALR----NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLAS 233 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~ 233 (1209)
+..|+||++++++|...+. ......+.|+|++|+|||++++.++++.......-.++++++....+...++..+++
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 4578999999999999885 233456889999999999999999998865432335677888777788899999999
Q ss_pred HhCCC-CCC-CCChHHHHHHHHHHHhc-CCeEEEEEeCCCccc---C---ccccCCCCCCCCccccccccCCcE--EEEe
Q 038494 234 DLDLN-FDL-NDSKPHRAKQLCQRLTK-EKRVLIILDNIWKKL---G---LEEIGIPFGDVDEKDRKQDLRRRT--IILT 302 (1209)
Q Consensus 234 ~l~~~-~~~-~~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~---~---~~~l~~~~~~~~~~~~~~~~~~s~--ilvT 302 (1209)
++... ... .....+....+.+.+.. +++.+||+|+++... . +..+...... . .+++ +|.+
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~--------~~~~v~vI~i 179 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-Y--------PGARIGVIGI 179 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-c--------CCCeEEEEEE
Confidence 98652 211 11224555666666653 467899999998753 1 1122111111 1 2323 5555
Q ss_pred ccchhhhcc------cCCcceEEEcCCCCHHHHHHHHHHHhCCCC-CCCcchHHHHHHHHHh----CCChhHHHHHHHHH
Q 038494 303 SRSKHLLTN------DMNSQKIFLIEVLSKEEALQFFEKIVGNSA-KASAFQPLADEIVGKC----GGLPVALSTVANAL 371 (1209)
Q Consensus 303 tR~~~v~~~------~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~-~~~~~~~~~~~i~~~~----~glPLai~~~~~~l 371 (1209)
+....+... ..-....+.+++++.++..+++..++.... ...-..+.++.|++.+ |..+.|+.++-...
T Consensus 180 ~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 180 SSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred ECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 554432211 011235789999999999999998864211 1111233444454444 55777777764322
Q ss_pred --h---cC---ChhHHHHHHHHHhcCCCccccCccccceeeeEEecccCCchhHHHHHHHhcccCc--CccccHHHHHHh
Q 038494 372 --K---NK---KLPVWKDALTQLRNSNPREIHGMDANVCSSIELSYNFLESDEAKSLFLLCTLFGE--GTPIQVASLLRY 441 (1209)
Q Consensus 372 --~---~~---~~~~w~~~~~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~~~~s~fp~--~~~i~~~~li~~ 441 (1209)
+ +. +.+.+..+.+++... ...-.+..||.+ .|..+..++...+ ...+....+...
T Consensus 260 ~~a~~~~~~~I~~~~v~~a~~~~~~~--------------~~~~~~~~L~~~-~k~~L~ai~~~~~~~~~~~~~~~i~~~ 324 (394)
T PRK00411 260 LIAEREGSRKVTEEDVRKAYEKSEIV--------------HLSEVLRTLPLH-EKLLLRAIVRLLKKGGDEVTTGEVYEE 324 (394)
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHHHH--------------HHHHHHhcCCHH-HHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 1 11 455666666654211 122357789887 4444443332211 124555555432
Q ss_pred hhhhccccccHHHHHHHHHHHHHHHHhcccccC
Q 038494 442 GKGLFKNVRTLENARNRVDALIDNLKASCLLLD 474 (1209)
Q Consensus 442 ~~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 474 (1209)
-..+........-....+.++++.|...+++..
T Consensus 325 y~~l~~~~~~~~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 325 YKELCEELGYEPRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred HHHHHHHcCCCcCcHHHHHHHHHHHHhcCCeEE
Confidence 111110000001123556778889999998863
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.17 E-value=6.9e-13 Score=122.84 Aligned_cols=149 Identities=21% Similarity=0.378 Sum_probs=122.9
Q ss_pred cCCeEEEEccCCCCccCCCcC-CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEe
Q 038494 518 QKGAIAISIPYGDIQELPERL-ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLC 596 (1209)
Q Consensus 518 ~~~~r~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~ 596 (1209)
...+.++.++.|.+..+|..+ ++.+|.+|+++.| .+.++|..+ +.+++||.|++.-|.+..+|..||.++-|++||
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn--qie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN--QIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc--hhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 346678888888888887665 7888999988887 577777765 788999999999888888899999999999999
Q ss_pred ccCcccCC--c-ccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCC
Q 038494 597 LDWCQLED--V-AAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSF 671 (1209)
Q Consensus 597 l~~~~l~~--l-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~ 671 (1209)
+.+|.+.+ + ..|..+.-|+-|.++.|.++.+|+.+++|++||.|.++. +.+-.+|.+ ++.++.|++|.+.++.
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRLRELHIQGNR 184 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHHHHHhcccce
Confidence 99888654 3 567778888888888898888999999999999999888 666677766 8889999999888765
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.16 E-value=6.1e-12 Score=132.40 Aligned_cols=291 Identities=19% Similarity=0.195 Sum_probs=179.6
Q ss_pred CCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccc-cccccCCCCCcEEeccC-cccCCc--
Q 038494 530 DIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSL-SSSLGHLINLQTLCLDW-CQLEDV-- 605 (1209)
Q Consensus 530 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~-~~l~~l-- 605 (1209)
.+.++|.... +.-..+++..| .+..+|+..|+.+++||.|||+.|.|+.| |+.|..+..|-.|-+.+ |.|+++
T Consensus 57 GL~eVP~~LP-~~tveirLdqN--~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 57 GLTEVPANLP-PETVEIRLDQN--QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CcccCcccCC-CcceEEEeccC--CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 4556665432 35566778777 68899999999999999999999999976 77899999988887777 889999
Q ss_pred ccccCCCCCCEEEccCCCCCccc-hhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccc
Q 038494 606 AAIGQLKKLEILSFRYSDIKQLP-LEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNAS 684 (1209)
Q Consensus 606 ~~i~~L~~L~~L~l~~~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 684 (1209)
..|++|..|+.|.+..|++..++ ..+..|++|..|.+.+ +.+..++.+.+..+..++++.+..+..
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~------------ 200 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPF------------ 200 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCcc------------
Confidence 67999999999999999888664 4588899999999998 778888877788888899888754421
Q ss_pred hhhhCCCCCCCE----EEeeccCCCCCCcccccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhhhHHHHHHH
Q 038494 685 LAELKGLSKLTT----LEIQVQDAQMLPQDLVFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLLENYGMKML 760 (1209)
Q Consensus 685 l~~L~~l~~L~~----L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 760 (1209)
....+++.+.. +.+.........+ . ......+...+-. ..-.....+
T Consensus 201 -icdCnL~wla~~~a~~~ietsgarc~~p---------~----------------rl~~~Ri~q~~a~---kf~c~~esl 251 (498)
T KOG4237|consen 201 -ICDCNLPWLADDLAMNPIETSGARCVSP---------Y----------------RLYYKRINQEDAR---KFLCSLESL 251 (498)
T ss_pred -ccccccchhhhHHhhchhhcccceecch---------H----------------HHHHHHhcccchh---hhhhhHHhH
Confidence 11222222221 0000000000000 0 0000000000000 000000000
Q ss_pred hcccceeeeccccccccccccccCCCCccCCcEEEEecccCceeeeccCCccccccCCcccEEecccccccchhcccccc
Q 038494 761 LKLTEDIRLEELTGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLEAICHSQLR 840 (1209)
Q Consensus 761 ~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 840 (1209)
...+.. .+......+... +..+|+|+.|+++++. ++.+. .++ ......++.|.+.. ++++.+....+.
T Consensus 252 ---~s~~~~-~d~~d~~cP~~c--f~~L~~L~~lnlsnN~-i~~i~--~~a--Fe~~a~l~eL~L~~-N~l~~v~~~~f~ 319 (498)
T KOG4237|consen 252 ---PSRLSS-EDFPDSICPAKC--FKKLPNLRKLNLSNNK-ITRIE--DGA--FEGAAELQELYLTR-NKLEFVSSGMFQ 319 (498)
T ss_pred ---HHhhcc-ccCcCCcChHHH--HhhcccceEeccCCCc-cchhh--hhh--hcchhhhhhhhcCc-chHHHHHHHhhh
Confidence 000111 111111111111 5678999999998865 33221 111 22356788888887 778777666554
Q ss_pred cccccCCccEEEEecCCCccccccHHHHhhcccccEEEEecc
Q 038494 841 EDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASC 882 (1209)
Q Consensus 841 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c 882 (1209)
.+..|+.|++++. .++.+.+ ..++.+.+|.+|.+-..
T Consensus 320 ---~ls~L~tL~L~~N-~it~~~~-~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 320 ---GLSGLKTLSLYDN-QITTVAP-GAFQTLFSLSTLNLLSN 356 (498)
T ss_pred ---ccccceeeeecCC-eeEEEec-ccccccceeeeeehccC
Confidence 3788899999885 5666654 35677888888887653
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.14 E-value=6.7e-10 Score=134.37 Aligned_cols=157 Identities=22% Similarity=0.256 Sum_probs=110.2
Q ss_pred CeEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccC
Q 038494 520 GAIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDW 599 (1209)
Q Consensus 520 ~~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~ 599 (1209)
.-..+.+..+.+..+|.... ++|+.|.+.+| .+..+|. ..++|++|++++|.++.+|.. ..+|+.|++++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N--~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDN--NLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh-cCCCEEEccCC--cCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence 34567788888888887543 57888888887 3555653 357899999999999888863 46788999999
Q ss_pred cccCCcccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccC
Q 038494 600 CQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEG 679 (1209)
Q Consensus 600 ~~l~~l~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 679 (1209)
|.++.++. ...+|+.|++++|+++.+|.. +++|++|++++ +.++.+|.. ..+|+.|++++|...
T Consensus 272 N~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~l----p~~L~~L~Ls~N~L~------ 335 (788)
T PRK15387 272 NPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPAL----PSELCKLWAYNNQLT------ 335 (788)
T ss_pred Cchhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCC-CccccCCCC----cccccccccccCccc------
Confidence 98877633 235688899999988888863 46789999988 567766542 235667777665321
Q ss_pred CCccchhhhCCC-CCCCEEEeeccCCCCCCc
Q 038494 680 GSNASLAELKGL-SKLTTLEIQVQDAQMLPQ 709 (1209)
Q Consensus 680 ~~~~~l~~L~~l-~~L~~L~l~~~~~~~~~~ 709 (1209)
.+..+ .+|+.|+++.|.+..+|.
T Consensus 336 -------~LP~lp~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 336 -------SLPTLPSGLQELSVSDNQLASLPT 359 (788)
T ss_pred -------cccccccccceEecCCCccCCCCC
Confidence 11112 368888888877766553
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.12 E-value=3.8e-12 Score=135.22 Aligned_cols=272 Identities=17% Similarity=0.196 Sum_probs=180.9
Q ss_pred CCccEEEEecCCCccccccHHHHhhcccccEEEEecccccccccccCCCCCCccccccccccCCCCCCCccCccccceEe
Q 038494 846 SNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKPTTSLGFNEIIADDDTAPKVGIPSSLVNLK 925 (1209)
Q Consensus 846 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~sL~~L~ 925 (1209)
..|++|.+++|.....-+.....++++++++|.+.+|.++++....... ..++.|+.|.
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla---------------------~~C~~l~~l~ 196 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA---------------------RYCRKLRHLN 196 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH---------------------Hhcchhhhhh
Confidence 3567777777766665555556667777777777777766554322111 4556777777
Q ss_pred eccccchhhhhccccccccccccccccchhhhhccCCcccccccccccccCCCcceEeeccCCCccccccCccccCCCcc
Q 038494 926 VSKCQKIEEIVGHVGEEVKENRIAFSELKVLILNYLSRLTSFCLENYTLEFPSLERVSMIRCPNMKTFSQGILSIPKPCK 1005 (1209)
Q Consensus 926 l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~p~~ 1005 (1209)
+..|.+++...... ....|++|+.|.++.|+.+..-........+..++.+...+|..+..-..
T Consensus 197 L~~c~~iT~~~Lk~------la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l---------- 260 (483)
T KOG4341|consen 197 LHSCSSITDVSLKY------LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEAL---------- 260 (483)
T ss_pred hcccchhHHHHHHH------HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHH----------
Confidence 77777777654321 23468999999999999988754444445566677777778876541000
Q ss_pred cccccccccccccccccccchhhhhhhhhhc----cccccceEEeeccCCceeeccCCCCCcccCCCccEEEEecCCCCc
Q 038494 1006 VQVTEKEEGELHHWEGNNLNSIMQKYYKEMI----GFRDIWYLQLSHFPRLKEIWHGQALPVSFFNNLARLVVDDCTNMS 1081 (1209)
Q Consensus 1006 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~L~~~~~~~~~~~~~l~~L~~L~i~~c~~l~ 1081 (1209)
....+...-+-.+++.+|...+..... ++..|+.|+.++|.++.+..... ...+..+|+.|.+++|.++.
T Consensus 261 ----~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a--Lg~~~~~L~~l~l~~c~~fs 334 (483)
T KOG4341|consen 261 ----LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWA--LGQHCHNLQVLELSGCQQFS 334 (483)
T ss_pred ----HHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHH--HhcCCCceEEEeccccchhh
Confidence 011113344556667788665554433 68899999999999887643321 23456899999999999988
Q ss_pred cccchhhHhhhccCcEEEEccCCchhhhhhcccccccccCCCcccccccccccccccccccccc--cCCCccCCCCccEE
Q 038494 1082 SAIPANLLRCLNNLRRLEVRNCDSLEEVLRLEELNADKEHIGPMFPKLSNLRLIDLPKLKRFCN--FTGNIIELPELRYL 1159 (1209)
Q Consensus 1082 ~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--~~~~l~~l~~L~~L 1159 (1209)
+..-..+..+++.|+.+++..|..+..-... ......|.|+.|.+++|..+++-.. +...-.....|+.+
T Consensus 335 d~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~--------sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~l 406 (483)
T KOG4341|consen 335 DRGFTMLGRNCPHLERLDLEECGLITDGTLA--------SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVL 406 (483)
T ss_pred hhhhhhhhcCChhhhhhcccccceehhhhHh--------hhccCCchhccCChhhhhhhhhhhhhhhhhcccccccccee
Confidence 7665666788999999999999977554111 1123679999999999988876511 01122356678888
Q ss_pred eeecCCCcc
Q 038494 1160 TIENCPDME 1168 (1209)
Q Consensus 1160 ~i~~C~~l~ 1168 (1209)
.+.+||.+.
T Consensus 407 EL~n~p~i~ 415 (483)
T KOG4341|consen 407 ELDNCPLIT 415 (483)
T ss_pred eecCCCCch
Confidence 888888764
No 24
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.09 E-value=3.2e-10 Score=122.45 Aligned_cols=198 Identities=24% Similarity=0.322 Sum_probs=105.4
Q ss_pred hhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHH---------H
Q 038494 161 FDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDK---------L 231 (1209)
Q Consensus 161 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~---------i 231 (1209)
|+||+++++.|.+++..+..+.+.|+|+.|+|||+|++++.+...... + .++|+..........+... +
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 789999999999999877778999999999999999999999885422 2 3344444333322221111 1
Q ss_pred HHHhCCCCC----------CCCChHHHHHHHHHHHhc-CCeEEEEEeCCCccc-Ccc---cc----CCCCCCCCcccccc
Q 038494 232 ASDLDLNFD----------LNDSKPHRAKQLCQRLTK-EKRVLIILDNIWKKL-GLE---EI----GIPFGDVDEKDRKQ 292 (1209)
Q Consensus 232 ~~~l~~~~~----------~~~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~-~~~---~l----~~~~~~~~~~~~~~ 292 (1209)
.+.+..... ...........+.+.+.+ +++.+||+||++... ..+ .+ ...+.. ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~------~~ 152 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDS------LL 152 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--------
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhh------cc
Confidence 111211100 111123455566666653 345999999998765 111 11 100000 00
Q ss_pred ccCCcEEEEeccchhhhcc-------cCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHH
Q 038494 293 DLRRRTIILTSRSKHLLTN-------DMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALS 365 (1209)
Q Consensus 293 ~~~~s~ilvTtR~~~v~~~-------~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 365 (1209)
......++++......... ..+....+.+++|+.+++++++...+.....-+...+..++|+..+||+|..|.
T Consensus 153 ~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 153 SQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp --TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHH
T ss_pred ccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHh
Confidence 0123334444433322211 123445699999999999999999765331112235667899999999999886
Q ss_pred H
Q 038494 366 T 366 (1209)
Q Consensus 366 ~ 366 (1209)
.
T Consensus 233 ~ 233 (234)
T PF01637_consen 233 E 233 (234)
T ss_dssp H
T ss_pred c
Confidence 4
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.07 E-value=2e-08 Score=110.74 Aligned_cols=197 Identities=18% Similarity=0.238 Sum_probs=122.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH---
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQ--- 254 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~--- 254 (1209)
.....+.|+|++|+||||+++.+++...... + .+.|+. ....+..+++..++..++.+.... ........+..
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~~-~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKLV-NTRVDAEDLLRMVAADFGLETEGR-DKAALLRELEDFLI 116 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeeee-CCCCCHHHHHHHHHHHcCCCCCCC-CHHHHHHHHHHHHH
Confidence 3456899999999999999999998876321 1 223433 334577889999999988764432 22333333333
Q ss_pred -HHhcCCeEEEEEeCCCccc--CccccCC---CCCCCCccccccccCCcEEEEeccchhh---hc-----ccCCcceEEE
Q 038494 255 -RLTKEKRVLIILDNIWKKL--GLEEIGI---PFGDVDEKDRKQDLRRRTIILTSRSKHL---LT-----NDMNSQKIFL 320 (1209)
Q Consensus 255 -~l~~~k~~LlvlDdv~~~~--~~~~l~~---~~~~~~~~~~~~~~~~s~ilvTtR~~~v---~~-----~~~~~~~~~~ 320 (1209)
....+++.+||+||++... .++.+.. ...... ....|++|...... .. ........+.
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~--------~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~ 188 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNA--------KLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCH 188 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCC--------CeEEEEEcCCHHHHHHHcCchhHHHHhheeeeee
Confidence 2335788999999999863 3333321 111111 23344555543211 00 0011235688
Q ss_pred cCCCCHHHHHHHHHHHhCCCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHh------cC---ChhHHHHHHHHH
Q 038494 321 IEVLSKEEALQFFEKIVGNSA---KASAFQPLADEIVGKCGGLPVALSTVANALK------NK---KLPVWKDALTQL 386 (1209)
Q Consensus 321 l~~L~~~e~~~lf~~~~~~~~---~~~~~~~~~~~i~~~~~glPLai~~~~~~l~------~~---~~~~w~~~~~~l 386 (1209)
+++++.+|..+++...+.... ...-..+..+.|++.++|.|..|..++..+- +. +.+.++.+..++
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 999999999999988764211 1223457889999999999999999987662 11 445555555543
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.07 E-value=3.6e-10 Score=136.68 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=39.5
Q ss_pred cCCcEEEEecccCceeeeccCCccccccCCcccEEecccccccchhcccccccccccCCccEEEEecCCCccccccHHHH
Q 038494 789 PRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLEAICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSIA 868 (1209)
Q Consensus 789 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 868 (1209)
++|+.|.+.++. ++.++ ...++|+.|++++ ++++.++. ..++|+.|+++++ .++.+|..
T Consensus 222 ~~L~~L~L~~N~-Lt~LP--------~lp~~Lk~LdLs~-N~LtsLP~-------lp~sL~~L~Ls~N-~L~~Lp~l--- 280 (788)
T PRK15387 222 AHITTLVIPDNN-LTSLP--------ALPPELRTLEVSG-NQLTSLPV-------LPPGLLELSIFSN-PLTHLPAL--- 280 (788)
T ss_pred cCCCEEEccCCc-CCCCC--------CCCCCCcEEEecC-CccCcccC-------cccccceeeccCC-chhhhhhc---
Confidence 367777776643 33222 1246777777766 45655421 2456777777765 35555431
Q ss_pred hhcccccEEEEecc
Q 038494 869 RNLLRLQKVKVASC 882 (1209)
Q Consensus 869 ~~l~~L~~L~l~~c 882 (1209)
+++|+.|+++++
T Consensus 281 --p~~L~~L~Ls~N 292 (788)
T PRK15387 281 --PSGLCKLWIFGN 292 (788)
T ss_pred --hhhcCEEECcCC
Confidence 245666666654
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.06 E-value=1.8e-08 Score=116.35 Aligned_cols=301 Identities=15% Similarity=0.148 Sum_probs=167.4
Q ss_pred ccchhhHHHHHHHHHHHHhC----CCceEEEEEcCCCChHHHHHHHHHHHHhhcc-cC---CEEEEEEcCCCcCHHHHHH
Q 038494 158 FEAFDSRMKLFQDVVEALRN----DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDK-VF---DKVVMAEVTENPDVQKIQD 229 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~-~f---~~~~wv~~s~~~~~~~l~~ 229 (1209)
++.|+||++++++|..++.+ .....+.|+|++|+|||++++.+++...... .. -..+|+++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 34789999999999999863 3446789999999999999999998764321 11 2467888887778888999
Q ss_pred HHHHHhC---CCCCCC-CChHHHHHHHHHHHh-cCCeEEEEEeCCCccc-CccccCCCCCCCCccccccccCCcEEEEec
Q 038494 230 KLASDLD---LNFDLN-DSKPHRAKQLCQRLT-KEKRVLIILDNIWKKL-GLEEIGIPFGDVDEKDRKQDLRRRTIILTS 303 (1209)
Q Consensus 230 ~i~~~l~---~~~~~~-~~~~~~~~~l~~~l~-~~k~~LlvlDdv~~~~-~~~~l~~~~~~~~~~~~~~~~~~s~ilvTt 303 (1209)
.|++++. ...... ....+....+.+.+. .+++++||+|+++... ..+.+...+........ .......+|++|
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~-~~~~~v~lI~i~ 172 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD-LDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC-CCCCeEEEEEEE
Confidence 9999883 322211 122344556666664 3567999999999772 11111111100000000 000223345555
Q ss_pred cchhhhcc----cC--CcceEEEcCCCCHHHHHHHHHHHhCC----CCCCCcchHHHHHHHHHhCCChhHH-HHHHHHH-
Q 038494 304 RSKHLLTN----DM--NSQKIFLIEVLSKEEALQFFEKIVGN----SAKASAFQPLADEIVGKCGGLPVAL-STVANAL- 371 (1209)
Q Consensus 304 R~~~v~~~----~~--~~~~~~~l~~L~~~e~~~lf~~~~~~----~~~~~~~~~~~~~i~~~~~glPLai-~~~~~~l- 371 (1209)
........ .. -....+.+++++.+|..+++..++.. ..-.++..+.+.+++...+|.|-.+ .++-...
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 43322110 00 11356889999999999999988741 1112222234455666777887443 3332211
Q ss_pred -h---cC---ChhHHHHHHHHHhcCCCccccCccccceeeeEEecccCCchhHHHHHHHhccc--CcCccccHHHHHHhh
Q 038494 372 -K---NK---KLPVWKDALTQLRNSNPREIHGMDANVCSSIELSYNFLESDEAKSLFLLCTLF--GEGTPIQVASLLRYG 442 (1209)
Q Consensus 372 -~---~~---~~~~w~~~~~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~~~~s~f--p~~~~i~~~~li~~~ 442 (1209)
. +. +.+..+.+.+.+... ...-.+..||.+ .+..+..++.. ..+..+....+....
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~~~--------------~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~~~~~~~~~~~y 317 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIEKD--------------RLLELIRGLPTH-SKLVLLAIANLAANDEDPFRTGEVYEVY 317 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHH--------------HHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 1 11 444555555543211 112345678877 55444444321 133346666555532
Q ss_pred hhhccccccHHHHHHHHHHHHHHHHhcccccC
Q 038494 443 KGLFKNVRTLENARNRVDALIDNLKASCLLLD 474 (1209)
Q Consensus 443 ~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 474 (1209)
.-+.............+.+++..|...|++..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 318 KEVCEDIGVDPLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHhcCCeEE
Confidence 11111000111234667788889999999864
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.99 E-value=2e-09 Score=131.33 Aligned_cols=136 Identities=15% Similarity=0.271 Sum_probs=88.5
Q ss_pred CCeEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEecc
Q 038494 519 KGAIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLD 598 (1209)
Q Consensus 519 ~~~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~ 598 (1209)
.+...+.+.+..+..+|... .++++.|++.+| .+..+|..++ .+|++|++++|.++.+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N--~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNN--ELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCC--CCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 34566777777777777543 256778888777 3556666543 467888888888877776554 367788888
Q ss_pred CcccCCc-ccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCC
Q 038494 599 WCQLEDV-AAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 670 (1209)
Q Consensus 599 ~~~l~~l-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 670 (1209)
+|.+..+ ..+. .+|++|++++|.++.+|..+. .+|++|++++ +.++.+|.. +. .+|+.|++++|
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP~~-lp--~sL~~L~Ls~N 314 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD-NSIRTLPAH-LP--SGITHLNVQSN 314 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC-CccccCccc-ch--hhHHHHHhcCC
Confidence 8877766 3332 467778887777777776553 4677777777 456655533 21 34555655554
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.97 E-value=3.5e-10 Score=140.08 Aligned_cols=296 Identities=23% Similarity=0.280 Sum_probs=175.0
Q ss_pred CeEEEEccCCC--CccCCC--cCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEE
Q 038494 520 GAIAISIPYGD--IQELPE--RLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTL 595 (1209)
Q Consensus 520 ~~r~l~l~~~~--~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L 595 (1209)
+++.+-+..+. +..++. ...++.||+|++++|. ....+|..+ +++-+||||+++++.+..+|..+++|+.|.||
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~-~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS-SLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC-ccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 67888887775 555655 4479999999999975 667787765 89999999999999999999999999999999
Q ss_pred eccCcc-cCCccc-ccCCCCCCEEEccCCCCC---ccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCC
Q 038494 596 CLDWCQ-LEDVAA-IGQLKKLEILSFRYSDIK---QLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 670 (1209)
Q Consensus 596 ~l~~~~-l~~l~~-i~~L~~L~~L~l~~~~~~---~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 670 (1209)
++..+. +..++. ...|.+||+|.+...... ..-..+.+|.+|+.+....+.. .+. ..+..++.|..+...-.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~-e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLL-EDLLGMTRLRSLLQSLS 700 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhH-hhhhhhHHHHHHhHhhh
Confidence 999887 344444 455999999999875422 1122344555555555443221 111 11334444443332211
Q ss_pred CCccccccCCCccchhhhCCCCCCCEEEeeccCCCCCCcccccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcch
Q 038494 671 FPQWDKVEGGSNASLAELKGLSKLTTLEIQVQDAQMLPQDLVFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVST 750 (1209)
Q Consensus 671 ~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~ 750 (1209)
. ...........+..+.+|+.|.+..+....+... |......
T Consensus 701 ~-----~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~-------------------~~~~~~~-------------- 742 (889)
T KOG4658|consen 701 I-----EGCSKRTLISSLGSLGNLEELSILDCGISEIVIE-------------------WEESLIV-------------- 742 (889)
T ss_pred h-----cccccceeecccccccCcceEEEEcCCCchhhcc-------------------cccccch--------------
Confidence 0 0012233455667777777777766555322210 0000000
Q ss_pred hhhHHHHHHHhcccceeeeccccccccccccccCCCCccCCcEEEEecccCceeeeccCCcc-----ccccCCcccEE-e
Q 038494 751 LLENYGMKMLLKLTEDIRLEELTGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRV-----HRKVFPLLESL-S 824 (1209)
Q Consensus 751 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-----~~~~~~~L~~L-~ 824 (1209)
.. .++++..+....|........ ..-.|+|+.|.+..|..++.+.+..... ....|+++..+ .
T Consensus 743 ~~-------~f~~l~~~~~~~~~~~r~l~~----~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~ 811 (889)
T KOG4658|consen 743 LL-------CFPNLSKVSILNCHMLRDLTW----LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRM 811 (889)
T ss_pred hh-------hHHHHHHHHhhccccccccch----hhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccccee
Confidence 00 112222233333332222221 2335788888888887766543321111 12346666666 4
Q ss_pred cccccccchhcccccccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEecc
Q 038494 825 LYKLINLEAICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASC 882 (1209)
Q Consensus 825 l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c 882 (1209)
+.+...+..+.+.+++ ++.|+.+.+..||++..+ |.+.++.+.+|
T Consensus 812 ~~~l~~l~~i~~~~l~----~~~l~~~~ve~~p~l~~~---------P~~~~~~i~~~ 856 (889)
T KOG4658|consen 812 LCSLGGLPQLYWLPLS----FLKLEELIVEECPKLGKL---------PLLSTLTIVGC 856 (889)
T ss_pred eecCCCCceeEecccC----ccchhheehhcCcccccC---------ccccccceecc
Confidence 6666666666555543 456888888888877765 44556666665
No 30
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.96 E-value=1.3e-08 Score=114.16 Aligned_cols=265 Identities=16% Similarity=0.165 Sum_probs=146.0
Q ss_pred ccchhhHHHHHHHHHHHHh-----CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHH
Q 038494 158 FEAFDSRMKLFQDVVEALR-----NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLA 232 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~ 232 (1209)
..+|+|++..++.|..++. ......+.++|++|+|||+||+.+++..... + ..+..+.......+. ..+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l~-~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDLA-AIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhHH-HHH
Confidence 4679999999999998886 2335568899999999999999999887542 2 122222111222222 222
Q ss_pred HHhCCCC----CCCCC-hHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCccccccccCCcEEEEeccchh
Q 038494 233 SDLDLNF----DLNDS-KPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKH 307 (1209)
Q Consensus 233 ~~l~~~~----~~~~~-~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 307 (1209)
..++... ++.+. .......+...+. +.+..+|+|+..+...+... .+ +.+-|..||+...
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~-~~~~~~v~~~~~~~~~~~~~---~~-----------~~~li~~t~~~~~ 141 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAME-DFRLDIVIGKGPSARSVRLD---LP-----------PFTLVGATTRAGM 141 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHh-hhheeeeeccCccccceeec---CC-----------CeEEEEecCCccc
Confidence 2332211 00000 0122223333333 34455666665554433321 11 3344556676644
Q ss_pred hhcccCC-cceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHh------cC---Chh
Q 038494 308 LLTNDMN-SQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVANALK------NK---KLP 377 (1209)
Q Consensus 308 v~~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~------~~---~~~ 377 (1209)
+...... ....+.+++++.+|..+++.+.+.... ..-..+.+..|++.|+|.|-.+..+...+. .. +.+
T Consensus 142 l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~-~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~ 220 (305)
T TIGR00635 142 LTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLN-VEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRD 220 (305)
T ss_pred cCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHH
Confidence 3321111 235689999999999999998876322 222356778999999999976655544321 00 111
Q ss_pred HHHHHHHHHhcCCCccccCccccceeeeEEecccCCchhHHHHHH-HhcccCcCccccHHHHHHhhhhhccccccHHHHH
Q 038494 378 VWKDALTQLRNSNPREIHGMDANVCSSIELSYNFLESDEAKSLFL-LCTLFGEGTPIQVASLLRYGKGLFKNVRTLENAR 456 (1209)
Q Consensus 378 ~w~~~~~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~~-~~s~fp~~~~i~~~~li~~~~g~i~~~~~~~~~~ 456 (1209)
....++. .+...|..+++. .+..+. +++.++.+ ++..+.+.... | .. .
T Consensus 221 ~v~~~l~-------------------~l~~~~~~l~~~-~~~~L~al~~~~~~~-~~~~~~ia~~l-g-----~~----~ 269 (305)
T TIGR00635 221 IALKALE-------------------MLMIDELGLDEI-DRKLLSVLIEQFQGG-PVGLKTLAAAL-G-----ED----A 269 (305)
T ss_pred HHHHHHH-------------------HhCCCCCCCCHH-HHHHHHHHHHHhCCC-cccHHHHHHHh-C-----CC----c
Confidence 1111211 144557788877 555555 55666544 56655554321 1 11 1
Q ss_pred HHHHHHHH-HHHhcccccCC
Q 038494 457 NRVDALID-NLKASCLLLDG 475 (1209)
Q Consensus 457 ~~~~~~~~-~L~~~~ll~~~ 475 (1209)
......++ .|++.+|++..
T Consensus 270 ~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 270 DTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred chHHHhhhHHHHHcCCcccC
Confidence 22333456 58888998643
No 31
>PF05729 NACHT: NACHT domain
Probab=98.96 E-value=3.1e-09 Score=107.71 Aligned_cols=145 Identities=24% Similarity=0.336 Sum_probs=92.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhccc----CCEEEEEEcCCCcCHH---HHHHHHHHHhCCCCCCCCChHHHHHHHH
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKV----FDKVVMAEVTENPDVQ---KIQDKLASDLDLNFDLNDSKPHRAKQLC 253 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~s~~~~~~---~l~~~i~~~l~~~~~~~~~~~~~~~~l~ 253 (1209)
+++.|+|.+|+||||+++.++.+...... +..++|+..+...... .+...+......... .....+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA------PIEELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh------hhHHHHH
Confidence 57899999999999999999998876543 3466777776544322 344444444332211 1111233
Q ss_pred HHHhcCCeEEEEEeCCCcccC-cc--------ccCCCCCCCCccccccccCCcEEEEeccchhh--hcccCCcceEEEcC
Q 038494 254 QRLTKEKRVLIILDNIWKKLG-LE--------EIGIPFGDVDEKDRKQDLRRRTIILTSRSKHL--LTNDMNSQKIFLIE 322 (1209)
Q Consensus 254 ~~l~~~k~~LlvlDdv~~~~~-~~--------~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v--~~~~~~~~~~~~l~ 322 (1209)
..+...++++||+|++++... .. .+...+... ...++.+++||+|.... ..........+++.
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~ 148 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ------ALPPGVKLIITSRPRAFPDLRRRLKQAQILELE 148 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhh------ccCCCCeEEEEEcCChHHHHHHhcCCCcEEEEC
Confidence 333457899999999987643 11 111111111 01168999999998765 22233445789999
Q ss_pred CCCHHHHHHHHHHHh
Q 038494 323 VLSKEEALQFFEKIV 337 (1209)
Q Consensus 323 ~L~~~e~~~lf~~~~ 337 (1209)
+|++++..+++.+..
T Consensus 149 ~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 149 PFSEEDIKQYLRKYF 163 (166)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998775
No 32
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.92 E-value=4.1e-08 Score=110.69 Aligned_cols=275 Identities=15% Similarity=0.135 Sum_probs=145.3
Q ss_pred ccccchhhHHHHHHHHHHHHh-----CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHH
Q 038494 156 KDFEAFDSRMKLFQDVVEALR-----NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDK 230 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~ 230 (1209)
....+|+||++.++.+..++. ....+.+.|+|++|+|||++|+.+++..... + .++....... ...+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~~~~-~~~l~~ 95 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPALEK-PGDLAA 95 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEecccccC-hHHHHH
Confidence 346789999999999887775 2334678899999999999999999987642 1 1222221111 112223
Q ss_pred HHHHhCCCC----CCCCC-hHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCccccccccCCcEEEEeccc
Q 038494 231 LASDLDLNF----DLNDS-KPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRS 305 (1209)
Q Consensus 231 i~~~l~~~~----~~~~~-~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~ 305 (1209)
++..++... ++.+. .....+.+...+. +.+..+|+|+..+...+.. .++ +.+-|..|++.
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e-~~~~~~~l~~~~~~~~~~~---~l~-----------~~~li~at~~~ 160 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAME-DFRLDIMIGKGPAARSIRL---DLP-----------PFTLIGATTRA 160 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHH-hcceeeeeccCccccceee---cCC-----------CceEEeecCCc
Confidence 333332111 00000 0111122222222 3444555555443322211 111 23345556664
Q ss_pred hhhhcccC-CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHhcCChhHHHHHHH
Q 038494 306 KHLLTNDM-NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVANALKNKKLPVWKDALT 384 (1209)
Q Consensus 306 ~~v~~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~~~ 384 (1209)
..+..... .....+++++++.++..+++.+.+.... ..-..+.+..|++.|+|.|-.+..+...+. .|....
T Consensus 161 ~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~- 233 (328)
T PRK00080 161 GLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG-VEIDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK- 233 (328)
T ss_pred ccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc-
Confidence 43322111 1235689999999999999998876322 223356788999999999965544443321 111100
Q ss_pred HHhcCCCcccc-CccccceeeeEEecccCCchhHHHHHH-HhcccCcCccccHHHHHHhhhhhccccccHHHHHHHHHHH
Q 038494 385 QLRNSNPREIH-GMDANVCSSIELSYNFLESDEAKSLFL-LCTLFGEGTPIQVASLLRYGKGLFKNVRTLENARNRVDAL 462 (1209)
Q Consensus 385 ~l~~~~~~~~~-~~~~~v~~~l~~sy~~L~~~~~k~c~~-~~s~fp~~~~i~~~~li~~~~g~i~~~~~~~~~~~~~~~~ 462 (1209)
... .+. ..-......+...+..|++. .+..+. ....|+.+ ++..+.+.... | .....++ +.
T Consensus 234 ---~~~--~I~~~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~-~~~~~~~a~~l-g-----~~~~~~~----~~ 296 (328)
T PRK00080 234 ---GDG--VITKEIADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGG-PVGLDTLAAAL-G-----EERDTIE----DV 296 (328)
T ss_pred ---CCC--CCCHHHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCC-ceeHHHHHHHH-C-----CCcchHH----HH
Confidence 000 000 00111223345667788877 566665 66677765 67777764331 1 1122223 23
Q ss_pred HH-HHHhcccccCC
Q 038494 463 ID-NLKASCLLLDG 475 (1209)
Q Consensus 463 ~~-~L~~~~ll~~~ 475 (1209)
++ .|++.+|++..
T Consensus 297 ~e~~Li~~~li~~~ 310 (328)
T PRK00080 297 YEPYLIQQGFIQRT 310 (328)
T ss_pred hhHHHHHcCCcccC
Confidence 44 57778988654
No 33
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.90 E-value=5.8e-09 Score=127.39 Aligned_cols=177 Identities=20% Similarity=0.297 Sum_probs=133.0
Q ss_pred hcCCeEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEe
Q 038494 517 IQKGAIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLC 596 (1209)
Q Consensus 517 ~~~~~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~ 596 (1209)
++..++.+.+.+|.+..+|... +++|++|++.+| ....+|..+. ..|+.|+|++|.+..+|..+. .+|++|+
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N--~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENL-QGNIKTLYANSN--QLTSIPATLP---DTIQEMELSINRITELPERLP--SALQSLD 268 (754)
T ss_pred cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCC--ccccCChhhh---ccccEEECcCCccCcCChhHh--CCCCEEE
Confidence 5678999999999999888755 469999999988 4556776543 479999999999999998775 5899999
Q ss_pred ccCcccCCc-ccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccc
Q 038494 597 LDWCQLEDV-AAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWD 675 (1209)
Q Consensus 597 l~~~~l~~l-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~ 675 (1209)
+++|.++.+ ..+. .+|++|++++|.++.+|..+. .+|++|++++ +.++.+|.. + .++|+.|.+++|...
T Consensus 269 Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~-l--~~sL~~L~Ls~N~Lt-- 338 (754)
T PRK15370 269 LFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS-NSLTALPET-L--PPGLKTLEAGENALT-- 338 (754)
T ss_pred CcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC-CccccCCcc-c--cccceeccccCCccc--
Confidence 999999877 4443 589999999999999987653 4789999998 667777653 2 368889988876421
Q ss_pred cccCCCccchhhhCCCCCCCEEEeeccCCCCCCcccccCCCCeEEE
Q 038494 676 KVEGGSNASLAELKGLSKLTTLEIQVQDAQMLPQDLVFVELPRYRI 721 (1209)
Q Consensus 676 ~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 721 (1209)
.....+ .++|+.|+++.+.+..+|..+. ..|+.|.+
T Consensus 339 -------~LP~~l--~~sL~~L~Ls~N~L~~LP~~lp-~~L~~LdL 374 (754)
T PRK15370 339 -------SLPASL--PPELQVLDVSKNQITVLPETLP-PTITTLDV 374 (754)
T ss_pred -------cCChhh--cCcccEEECCCCCCCcCChhhc-CCcCEEEC
Confidence 011122 2588999999888776665432 35555554
No 34
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.73 E-value=1.6e-07 Score=101.01 Aligned_cols=179 Identities=16% Similarity=0.255 Sum_probs=111.4
Q ss_pred ccccccccccchhhHHHHH---HHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-CHH
Q 038494 150 TEHMQAKDFEAFDSRMKLF---QDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-DVQ 225 (1209)
Q Consensus 150 ~~~~~~~~~~~~~gR~~~~---~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-~~~ 225 (1209)
..++.|....++||.+..+ .-|..++..+......+||++|+||||||+.++...... | ..++-.. +++
T Consensus 15 A~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvk 87 (436)
T COG2256 15 AERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVK 87 (436)
T ss_pred HHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc--e-----EEeccccccHH
Confidence 3344555677888876554 335566667778888899999999999999999876543 4 2233222 233
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEE--
Q 038494 226 KIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIIL-- 301 (1209)
Q Consensus 226 ~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilv-- 301 (1209)
++ +.+ ++.-.+....+++.+|++|.|...+ +-+.+.+.. . .|.-|+|
T Consensus 88 dl-r~i-----------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v-E----------~G~iilIGA 138 (436)
T COG2256 88 DL-REI-----------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV-E----------NGTIILIGA 138 (436)
T ss_pred HH-HHH-----------------HHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh-c----------CCeEEEEec
Confidence 32 222 2222223334789999999998764 333343322 1 6777777
Q ss_pred eccchhhh--cccCCcceEEEcCCCCHHHHHHHHHHHhCCCCC-----CC-cchHHHHHHHHHhCCChhHH
Q 038494 302 TSRSKHLL--TNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAK-----AS-AFQPLADEIVGKCGGLPVAL 364 (1209)
Q Consensus 302 TtR~~~v~--~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~-----~~-~~~~~~~~i~~~~~glPLai 364 (1209)
||-++... ........++.+++|+.++-.+++.+.+..... .. -.++....+++.++|=--+.
T Consensus 139 TTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 139 TTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred cCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 55555321 112356689999999999999999985431111 11 22446667888888865443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.70 E-value=1.2e-08 Score=100.95 Aligned_cols=104 Identities=25% Similarity=0.367 Sum_probs=27.4
Q ss_pred CCCCCcEEEecCccccccccccc-CCCCCcEEeccCcccCCcccccCCCCCCEEEccCCCCCccchhcc-CCCCCCEEec
Q 038494 565 GTEDLKVLSLSGIHFSSLSSSLG-HLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIG-QLAQLQLLDL 642 (1209)
Q Consensus 565 ~l~~Lr~L~L~~~~i~~lp~~i~-~l~~L~~L~l~~~~l~~l~~i~~L~~L~~L~l~~~~~~~lp~~i~-~L~~L~~L~l 642 (1209)
+..++|.|+|.++.|+.+. .++ .+.+|+.|++++|.++.+.++..+++|++|++++|.++.++..+. .+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 3445566666666665543 243 455666666666666666556666666666666666666554442 4566666666
Q ss_pred cCCCCCcccCc-hhhcCCCCCcEEECCCC
Q 038494 643 SNCSSLVVIAP-NVISKFSRLEELYMGDS 670 (1209)
Q Consensus 643 ~~~~~l~~~~~-~~l~~L~~L~~L~l~~~ 670 (1209)
++ +.+..+.. ..+..+++|+.|++.+|
T Consensus 96 ~~-N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 96 SN-NKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp TT-S---SCCCCGGGGG-TT--EEE-TT-
T ss_pred cC-CcCCChHHhHHHHcCCCcceeeccCC
Confidence 65 34433211 22455666666666554
No 36
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.70 E-value=1.5e-07 Score=109.36 Aligned_cols=181 Identities=15% Similarity=0.213 Sum_probs=112.3
Q ss_pred cccccchhhHHHHHHH---HHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-CHHHHHHH
Q 038494 155 AKDFEAFDSRMKLFQD---VVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-DVQKIQDK 230 (1209)
Q Consensus 155 ~~~~~~~~gR~~~~~~---l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~ 230 (1209)
|....+|+|++..+.. +.+++.......+.++|++|+||||+|+.+++..... | +.++... ...+ .+.
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~--~-----~~l~a~~~~~~~-ir~ 79 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP--F-----EALSAVTSGVKD-LRE 79 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E-----EEEecccccHHH-HHH
Confidence 3446689999888666 8888887777788999999999999999999876532 2 2222211 1111 111
Q ss_pred HHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEE--eccch
Q 038494 231 LASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIIL--TSRSK 306 (1209)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilv--TtR~~ 306 (1209)
+. .........+++.+|++|+++... +.+.+...+. .|..++| ||.+.
T Consensus 80 ii-----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le-----------~~~iilI~att~n~ 131 (413)
T PRK13342 80 VI-----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE-----------DGTITLIGATTENP 131 (413)
T ss_pred HH-----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh-----------cCcEEEEEeCCCCh
Confidence 11 111112223578999999999763 3333332221 3444444 34433
Q ss_pred h--hhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCC-CC-CcchHHHHHHHHHhCCChhHHHHHHHHH
Q 038494 307 H--LLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSA-KA-SAFQPLADEIVGKCGGLPVALSTVANAL 371 (1209)
Q Consensus 307 ~--v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~-~~-~~~~~~~~~i~~~~~glPLai~~~~~~l 371 (1209)
. +..........+.+.+++.++...++.+.+.... .. .-..+..+.|++.++|.+..+..+....
T Consensus 132 ~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 132 SFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred hhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 2 1111223457899999999999999998764211 11 2335677889999999988766554443
No 37
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.70 E-value=7.4e-07 Score=105.27 Aligned_cols=207 Identities=17% Similarity=0.131 Sum_probs=119.9
Q ss_pred ccchhhHHHHHHHHHHHHhC-----CCceEEEEEcCCCChHHHHHHHHHHHHhhc---ccCC--EEEEEEcCCCcCHHHH
Q 038494 158 FEAFDSRMKLFQDVVEALRN-----DKLNIIGVHGMGGVGKTTLVKQIAKQVMED---KVFD--KVVMAEVTENPDVQKI 227 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~---~~f~--~~~wv~~s~~~~~~~l 227 (1209)
++.+.||++++++|...|.. ....++.|+|.+|+|||+.++.|.+..... .... .+++|++..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 34577999999999988862 223567899999999999999999876431 1111 4578888777788888
Q ss_pred HHHHHHHhCCCCCCC-CChHHHHHHHHHHHhc--CCeEEEEEeCCCcccC--ccccCCCCCCCCccccccccCCcEEEE-
Q 038494 228 QDKLASDLDLNFDLN-DSKPHRAKQLCQRLTK--EKRVLIILDNIWKKLG--LEEIGIPFGDVDEKDRKQDLRRRTIIL- 301 (1209)
Q Consensus 228 ~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l~~--~k~~LlvlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~~~s~ilv- 301 (1209)
+..|++++....... ....+....+...+.. +...+||||+++.... -+.+...+.+ ....+++|+|
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-------~~~s~SKLiLI 906 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-------PTKINSKLVLI 906 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-------hhccCCeEEEE
Confidence 899998884433221 1223445555555532 2346999999986531 1111111110 0013455444
Q ss_pred -eccchhhhc----cc--CCcceEEEcCCCCHHHHHHHHHHHhCCC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHH
Q 038494 302 -TSRSKHLLT----ND--MNSQKIFLIEVLSKEEALQFFEKIVGNS---AKASAFQPLADEIVGKCGGLPVALSTVANAL 371 (1209)
Q Consensus 302 -TtR~~~v~~----~~--~~~~~~~~l~~L~~~e~~~lf~~~~~~~---~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 371 (1209)
+|...+... .. .-....+..+|++.+|-.+++..++... .++..++-+|+.++..-|..-.||.++-...
T Consensus 907 GISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 907 AISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred EecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 333222111 00 0112346779999999999999988632 1111222233333333445556666554433
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.67 E-value=1.9e-08 Score=99.47 Aligned_cols=131 Identities=24% Similarity=0.250 Sum_probs=34.2
Q ss_pred ccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCc-ccc-c
Q 038494 532 QELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDV-AAI-G 609 (1209)
Q Consensus 532 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l-~~i-~ 609 (1209)
+..+...++.+++.|++.++. +..+. ..-..+.+|++|++++|.++.++. +..+++|++|++++|.++.+ ..+ .
T Consensus 10 ~~~~~~~n~~~~~~L~L~~n~--I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 10 EQIAQYNNPVKLRELNLRGNQ--ISTIE-NLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHH
T ss_pred ccccccccccccccccccccc--ccccc-chhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHH
Confidence 333333344455555555542 22221 111134556666666666665542 55566666666666666555 333 2
Q ss_pred CCCCCCEEEccCCCCCccc--hhccCCCCCCEEeccCCCCCcccC---chhhcCCCCCcEEEC
Q 038494 610 QLKKLEILSFRYSDIKQLP--LEIGQLAQLQLLDLSNCSSLVVIA---PNVISKFSRLEELYM 667 (1209)
Q Consensus 610 ~L~~L~~L~l~~~~~~~lp--~~i~~L~~L~~L~l~~~~~l~~~~---~~~l~~L~~L~~L~l 667 (1209)
.+++|++|++++|.+..+. ..+..+++|++|++.++ .+...+ ...+..+++|+.|+.
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCC
Confidence 4566666666666554332 23445566666666652 222211 223556667776654
No 39
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.60 E-value=6.1e-07 Score=112.23 Aligned_cols=311 Identities=16% Similarity=0.224 Sum_probs=176.8
Q ss_pred hhhHHHHHHHHHHHHh---CCCceEEEEEcCCCChHHHHHHHHHHHHhhc-ccCCEEEEEEcCCCcC---HHHHHH----
Q 038494 161 FDSRMKLFQDVVEALR---NDKLNIIGVHGMGGVGKTTLVKQIAKQVMED-KVFDKVVMAEVTENPD---VQKIQD---- 229 (1209)
Q Consensus 161 ~~gR~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~s~~~~---~~~l~~---- 229 (1209)
++||+.+++.|...+. .+...++.+.|.+|||||+++++|......+ ..|-.-.+-....... ..+.++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 6899999999999887 4566799999999999999999999887644 1111111111111111 111222
Q ss_pred ---------------HHHHHhCCCCCCC----------------------CChHH-----HHHHHHHHHhcCCeEEEEEe
Q 038494 230 ---------------KLASDLDLNFDLN----------------------DSKPH-----RAKQLCQRLTKEKRVLIILD 267 (1209)
Q Consensus 230 ---------------~i~~~l~~~~~~~----------------------~~~~~-----~~~~l~~~l~~~k~~LlvlD 267 (1209)
.+...++...... ..... ....+.....+.|+.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 2222222211000 00011 11223333345679999999
Q ss_pred CCCcccC--c---cccCCCCCCCCccccccccCCcEEEE--eccch-hhhcccCCcceEEEcCCCCHHHHHHHHHHHhCC
Q 038494 268 NIWKKLG--L---EEIGIPFGDVDEKDRKQDLRRRTIIL--TSRSK-HLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGN 339 (1209)
Q Consensus 268 dv~~~~~--~---~~l~~~~~~~~~~~~~~~~~~s~ilv--TtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~ 339 (1209)
|+.-.+. . +.+.....-+. -....|.. |.+.. ............+.|.||+..+.-.+.....+.
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~-------~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~ 234 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGA-------YRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGC 234 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhh-------hhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCC
Confidence 9954321 1 11111110000 01122333 33332 112222345578999999999999999998874
Q ss_pred CCCCCcchHHHHHHHHHhCCChhHHHHHHHHHhcC-------ChhHHHHHHHHHhcCCCccccCccccceeeeEEecccC
Q 038494 340 SAKASAFQPLADEIVGKCGGLPVALSTVANALKNK-------KLPVWKDALTQLRNSNPREIHGMDANVCSSIELSYNFL 412 (1209)
Q Consensus 340 ~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~-------~~~~w~~~~~~l~~~~~~~~~~~~~~v~~~l~~sy~~L 412 (1209)
... -..+..+.|+++..|+|+-+..+-..+... +...|..-...+.. .... +.|...+..-.+.|
T Consensus 235 ~~~--~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~~-~~vv~~l~~rl~kL 306 (849)
T COG3899 235 TKL--LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LATT-DAVVEFLAARLQKL 306 (849)
T ss_pred ccc--ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chhh-HHHHHHHHHHHhcC
Confidence 322 235677899999999999999998888643 22334332222111 1111 22444566778899
Q ss_pred CchhHHHHHHHhcccCcCccccHHHHHHhhhhhccccccHHHHHHHHHHHHHHHHhcccccCC------CCCCc--e-Ee
Q 038494 413 ESDEAKSLFLLCTLFGEGTPIQVASLLRYGKGLFKNVRTLENARNRVDALIDNLKASCLLLDG------DAEDE--V-KM 483 (1209)
Q Consensus 413 ~~~~~k~c~~~~s~fp~~~~i~~~~li~~~~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~------~~~~~--~-~m 483 (1209)
|.. .|+.+...|++.. .|+.+.|...++. ........+.+.|....++-.+ ..... | ..
T Consensus 307 ~~~-t~~Vl~~AA~iG~--~F~l~~La~l~~~---------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~ 374 (849)
T COG3899 307 PGT-TREVLKAAACIGN--RFDLDTLAALAED---------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFL 374 (849)
T ss_pred CHH-HHHHHHHHHHhCc--cCCHHHHHHHHhh---------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhh
Confidence 988 8999999999987 6777777765543 1233344455555555554311 11111 2 56
Q ss_pred hhHHHHHHHHHhhcc
Q 038494 484 HDVIHVVAVSIASEK 498 (1209)
Q Consensus 484 Hdlv~~~~~~~~~~~ 498 (1209)
||.|++.|-....++
T Consensus 375 H~~vqqaaY~~i~~~ 389 (849)
T COG3899 375 HDRVQQAAYNLIPES 389 (849)
T ss_pred HHHHHHHHhccCchh
Confidence 999998876655443
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.59 E-value=3.6e-07 Score=96.87 Aligned_cols=155 Identities=14% Similarity=0.169 Sum_probs=94.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT 257 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 257 (1209)
...+.+.|+|++|+|||+|++.+++....+ ...+.|+++.... . ....+.+.+.
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~---------------------~~~~~~~~~~ 90 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---Y---------------------FSPAVLENLE 90 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---h---------------------hhHHHHhhcc
Confidence 344678999999999999999999987654 3355677764210 0 0011222332
Q ss_pred cCCeEEEEEeCCCcc---cCccc-cCCCCCCCCccccccccCCcEEEEeccch----------hhhcccCCcceEEEcCC
Q 038494 258 KEKRVLIILDNIWKK---LGLEE-IGIPFGDVDEKDRKQDLRRRTIILTSRSK----------HLLTNDMNSQKIFLIEV 323 (1209)
Q Consensus 258 ~~k~~LlvlDdv~~~---~~~~~-l~~~~~~~~~~~~~~~~~~s~ilvTtR~~----------~v~~~~~~~~~~~~l~~ 323 (1209)
+.-+|++||+|.. ..|+. +...+.... ..|..+||+|.+. ++... +.....+++++
T Consensus 91 --~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~-------~~~~~illits~~~p~~l~~~~~~L~sR-l~~g~~~~l~~ 160 (229)
T PRK06893 91 --QQDLVCLDDLQAVIGNEEWELAIFDLFNRIK-------EQGKTLLLISADCSPHALSIKLPDLASR-LTWGEIYQLND 160 (229)
T ss_pred --cCCEEEEeChhhhcCChHHHHHHHHHHHHHH-------HcCCcEEEEeCCCChHHccccchhHHHH-HhcCCeeeCCC
Confidence 3359999999975 23432 211121111 0355565544432 22221 23446889999
Q ss_pred CCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 038494 324 LSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVAN 369 (1209)
Q Consensus 324 L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 369 (1209)
+++++.++++++.+.... -.--+++..-|++++.|-.-++..+-.
T Consensus 161 pd~e~~~~iL~~~a~~~~-l~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 161 LTDEQKIIVLQRNAYQRG-IELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred CCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 999999999998886332 222356778899988877665554443
No 41
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=5.7e-06 Score=97.86 Aligned_cols=181 Identities=17% Similarity=0.220 Sum_probs=117.4
Q ss_pred cccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhccc-------------------CCEEEEE
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDKV-------------------FDKVVMA 216 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~~~wv 216 (1209)
...+++|.+..++.|.+++..++. ..+.++|..|+||||+|+.+++....+.. |..++++
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI 93 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM 93 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence 367899999999999999987654 45679999999999999999987753211 1112333
Q ss_pred EcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCcccc
Q 038494 217 EVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDR 290 (1209)
Q Consensus 217 ~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~ 290 (1209)
+.+.... .+.++.+.+... .++.-++|+|+++... .++.+...+-...
T Consensus 94 DAas~rg----------------------VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP---- 147 (830)
T PRK07003 94 DAASNRG----------------------VDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPP---- 147 (830)
T ss_pred ccccccc----------------------HHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcC----
Confidence 2222211 223333333322 2455689999999774 3555544332222
Q ss_pred ccccCCcEEEEeccchh-hhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCCh-hHHHHHH
Q 038494 291 KQDLRRRTIILTSRSKH-LLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLP-VALSTVA 368 (1209)
Q Consensus 291 ~~~~~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~~ 368 (1209)
.+.++|++|++.. +..........+++..++.++..+.+.+.+.... ..-..+..+.|++.++|.. -|+.++-
T Consensus 148 ----~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-I~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 148 ----PHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER-IAFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred ----CCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4677777777654 3333345567899999999999999998875322 1223567788999998854 4555543
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.52 E-value=1.5e-08 Score=103.05 Aligned_cols=134 Identities=17% Similarity=0.189 Sum_probs=104.4
Q ss_pred CCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCcccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccC
Q 038494 565 GTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSN 644 (1209)
Q Consensus 565 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~ 644 (1209)
..+.|..||||+|.|+.+.+++.-++.+|.|++++|.+..+.++..|++|++||+++|.+.++-..-.+|-+.++|.+.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 45678899999999998888888889999999999998888778889999999999998887766667788888999988
Q ss_pred CCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCCCCCEEEeeccCCCCCC
Q 038494 645 CSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTTLEIQVQDAQMLP 708 (1209)
Q Consensus 645 ~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~ 708 (1209)
+.+..+. ++++|-+|..|++.+|.+. ....+..+++++-|..+.+.++.+..++
T Consensus 362 -N~iE~LS--GL~KLYSLvnLDl~~N~Ie-------~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 362 -NKIETLS--GLRKLYSLVNLDLSSNQIE-------ELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred -hhHhhhh--hhHhhhhheeccccccchh-------hHHHhcccccccHHHHHhhcCCCccccc
Confidence 6666653 2788888888888876531 1122345677777777777777665444
No 43
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.51 E-value=1.1e-08 Score=108.25 Aligned_cols=123 Identities=24% Similarity=0.298 Sum_probs=81.8
Q ss_pred hhhcCCeEEEEccCCCCccCCCcC--CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecC-cccccccc-cccCCC
Q 038494 515 KIIQKGAIAISIPYGDIQELPERL--ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSG-IHFSSLSS-SLGHLI 590 (1209)
Q Consensus 515 ~~~~~~~r~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~i~~lp~-~i~~l~ 590 (1209)
.+.|.....+.+..|.|..+|... .+++||.|+++.| .+..|.+..|++++.|..|-+.+ |.|+++|. .|+.|.
T Consensus 63 ~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N--~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN--NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred ccCCCcceEEEeccCCcccCChhhccchhhhceeccccc--chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 356777788888888888888754 6888888888888 47777777888888776666655 77887775 566666
Q ss_pred CCcEEeccCcccCCc--ccccCCCCCCEEEccCCCCCccch-hccCCCCCCE
Q 038494 591 NLQTLCLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQLPL-EIGQLAQLQL 639 (1209)
Q Consensus 591 ~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~-~i~~L~~L~~ 639 (1209)
.|+-|.+.-|++.-+ ..+..|++|..|.+..|.+..++. .+..+..+++
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~t 192 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKT 192 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccch
Confidence 666666666665544 445555555555555555444443 2333333333
No 44
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.47 E-value=9.9e-08 Score=108.46 Aligned_cols=135 Identities=21% Similarity=0.220 Sum_probs=66.8
Q ss_pred hcCCCCCcEEEecCcccc-----cccccccCCCCCcEEeccCcccCC-------c-ccccCCCCCCEEEccCCCCC-ccc
Q 038494 563 FEGTEDLKVLSLSGIHFS-----SLSSSLGHLINLQTLCLDWCQLED-------V-AAIGQLKKLEILSFRYSDIK-QLP 628 (1209)
Q Consensus 563 ~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~L~~L~l~~~~l~~-------l-~~i~~L~~L~~L~l~~~~~~-~lp 628 (1209)
|..+..|++|+++++.++ .++..+...++|++|+++++.+.. + ..+.++++|+.|++++|.+. ..+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 445555666666666653 344455556666666666665441 1 34455666666666666554 233
Q ss_pred hhccCCCC---CCEEeccCCCCCcccC----chhhcCC-CCCcEEECCCCCCccccccCCCccchhhhCCCCCCCEEEee
Q 038494 629 LEIGQLAQ---LQLLDLSNCSSLVVIA----PNVISKF-SRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTTLEIQ 700 (1209)
Q Consensus 629 ~~i~~L~~---L~~L~l~~~~~l~~~~----~~~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~ 700 (1209)
..+..+.+ |++|++++|. +.... ...+..+ ++|++|++++|..... ........+..+.+|++|+++
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~~~~~L~~L~l~ 173 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA----SCEALAKALRANRDLKELNLA 173 (319)
T ss_pred HHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCch----HHHHHHHHHHhCCCcCEEECc
Confidence 33333333 6666666643 22110 1123344 5666666665532110 011122334455566666655
Q ss_pred cc
Q 038494 701 VQ 702 (1209)
Q Consensus 701 ~~ 702 (1209)
.+
T Consensus 174 ~n 175 (319)
T cd00116 174 NN 175 (319)
T ss_pred CC
Confidence 44
No 45
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.46 E-value=2.4e-06 Score=97.75 Aligned_cols=200 Identities=17% Similarity=0.173 Sum_probs=113.6
Q ss_pred ccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCC-EEEEEEcCCCcCH--HHHHH--HHH
Q 038494 158 FEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFD-KVVMAEVTENPDV--QKIQD--KLA 232 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~s~~~~~--~~l~~--~i~ 232 (1209)
...++|++..++.+..++..+..+.+.++|++|+||||+|+.+++..... .+. ..+.+++++-... ..+.. ...
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVEDPRFA 92 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhcCcchh
Confidence 56789999999999999987776778999999999999999999887532 222 2344554331100 00000 000
Q ss_pred HHhCCCCCCCCChHHHHHHHHHHHhc-----CCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccc
Q 038494 233 SDLDLNFDLNDSKPHRAKQLCQRLTK-----EKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRS 305 (1209)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~~l~~-----~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~ 305 (1209)
+.++.............+.+.+.... ..+-+||+||++... ....+...+.... ..+++|+||..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~--------~~~~~Il~~~~ 164 (337)
T PRK12402 93 HFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS--------RTCRFIIATRQ 164 (337)
T ss_pred hhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc--------CCCeEEEEeCC
Confidence 00000000000012233333333221 234589999997652 1222222111111 45677777754
Q ss_pred hh-hhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 306 KH-LLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 306 ~~-v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
.. +..........+++.+++.++...++.+.+..... .-..+.++.+++.++|.+-.+...
T Consensus 165 ~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~~~~~al~~l~~~~~gdlr~l~~~ 226 (337)
T PRK12402 165 PSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-DYDDDGLELIAYYAGGDLRKAILT 226 (337)
T ss_pred hhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 32 22211234467899999999999999887653221 123567889999998876655443
No 46
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=2.5e-06 Score=102.91 Aligned_cols=180 Identities=13% Similarity=0.209 Sum_probs=115.2
Q ss_pred cccchhhHHHHHHHHHHHHhCCCceE-EEEEcCCCChHHHHHHHHHHHHhhccc-------------------CCEEEEE
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLNI-IGVHGMGGVGKTTLVKQIAKQVMEDKV-------------------FDKVVMA 216 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~v-i~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~~~wv 216 (1209)
....++|.+..++.|.+++..++..- +.++|+.|+||||+|+.+++....... |..++++
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 36689999999999999998766654 579999999999999999988754211 1112222
Q ss_pred EcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCccccCCCCCCCCcccc
Q 038494 217 EVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKK--LGLEEIGIPFGDVDEKDR 290 (1209)
Q Consensus 217 ~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~ 290 (1209)
....... .+.++.+.+.+. .+++-++|+|+++.. ..++.+...+-...
T Consensus 94 dAas~~k----------------------VDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP---- 147 (944)
T PRK14949 94 DAASRTK----------------------VDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPP---- 147 (944)
T ss_pred ccccccC----------------------HHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccC----
Confidence 2211111 223333333332 356789999999876 34444433332211
Q ss_pred ccccCCcEEEEeccc-hhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 291 KQDLRRRTIILTSRS-KHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 291 ~~~~~~s~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
...++|++|.+ ..+..........+++.+++.++....+.+.+.... .....+.+..|++.++|.|--+..+
T Consensus 148 ----~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 148 ----EHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred ----CCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 45566665554 333322234568999999999999999988775321 2233567789999999988644444
No 47
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=1.5e-05 Score=93.47 Aligned_cols=180 Identities=14% Similarity=0.201 Sum_probs=114.3
Q ss_pred ccccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhccc-------------------CCEEEE
Q 038494 156 KDFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDKV-------------------FDKVVM 215 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~~~w 215 (1209)
.....++|.+...+.|..++..++. ..+.++|+.|+||||+|+.+++....... |..++.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 3467899999999999999987654 57789999999999999999988743211 111222
Q ss_pred EEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccc
Q 038494 216 AEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKD 289 (1209)
Q Consensus 216 v~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~ 289 (1209)
++.+.... .+.++.+..... .+++-++|+|+++... ..+.+...+-...
T Consensus 92 IDAAs~~~----------------------VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP--- 146 (702)
T PRK14960 92 IDAASRTK----------------------VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP--- 146 (702)
T ss_pred ecccccCC----------------------HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCC---
Confidence 22221111 233333433331 2566799999998763 3444433322222
Q ss_pred cccccCCcEEEEeccchh-hhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHH
Q 038494 290 RKQDLRRRTIILTSRSKH-LLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALST 366 (1209)
Q Consensus 290 ~~~~~~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 366 (1209)
.+.++|++|.+.. +..........+++.+++.++..+.+.+.+.... ..-..+....|++.++|-+-.+..
T Consensus 147 -----~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg-I~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 147 -----EHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ-IAADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred -----CCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 4566777666532 2222235567899999999999999988775322 222355677899999997754433
No 48
>PLN03025 replication factor C subunit; Provisional
Probab=98.44 E-value=1.7e-06 Score=97.05 Aligned_cols=185 Identities=12% Similarity=0.133 Sum_probs=109.5
Q ss_pred cccccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCC-EEEEEEcCCCcCHHHHHHHHHH
Q 038494 155 AKDFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFD-KVVMAEVTENPDVQKIQDKLAS 233 (1209)
Q Consensus 155 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~s~~~~~~~l~~~i~~ 233 (1209)
|....+++|.++.+..|.+++..+..+.+.++|++|+||||+|+.+++..... .|. .++-++.++..+.. ..+.+++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~-~vr~~i~ 86 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGID-VVRNKIK 86 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHH-HHHHHHH
Confidence 34467889999989989888887777778899999999999999999887432 122 22222333332222 1222222
Q ss_pred HhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccchh-hhc
Q 038494 234 DLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKH-LLT 310 (1209)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-v~~ 310 (1209)
.+..... .+..++.-++|+|+++... ....+...+.... ..+++++++.... +..
T Consensus 87 ~~~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~--------~~t~~il~~n~~~~i~~ 144 (319)
T PLN03025 87 MFAQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYS--------NTTRFALACNTSSKIIE 144 (319)
T ss_pred HHHhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhccc--------CCceEEEEeCCccccch
Confidence 1110000 0011356799999998763 2222221111111 4566777665432 211
Q ss_pred ccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHH
Q 038494 311 NDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVAL 364 (1209)
Q Consensus 311 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 364 (1209)
........+++.++++++....+...+...... -..+....|++.++|-.-.+
T Consensus 145 ~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~-i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 145 PIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVP-YVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred hHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 112334689999999999999998877532221 12456788999998865433
No 49
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=3.7e-05 Score=90.47 Aligned_cols=191 Identities=15% Similarity=0.155 Sum_probs=114.4
Q ss_pred cccchhhHHHHHHHHHHHHhCCCce-EEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHh
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLN-IIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDL 235 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l 235 (1209)
...+++|.+..++.|..++..+... .+.++|++|+||||+|+.+++.....+.+....|.+.+.. .+....
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~--------~i~~~~ 83 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL--------AVRRGA 83 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH--------HHhcCC
Confidence 3668899999999999988876654 5589999999999999999988764322222233322110 000000
Q ss_pred C-----CCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEecc
Q 038494 236 D-----LNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSR 304 (1209)
Q Consensus 236 ~-----~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 304 (1209)
. .+... ....+.++.+...+. .+++-++|+|+++... .++.+...+.... ....+|++|.
T Consensus 84 h~dv~el~~~~-~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~--------~~t~~Il~t~ 154 (504)
T PRK14963 84 HPDVLEIDAAS-NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPP--------EHVIFILATT 154 (504)
T ss_pred CCceEEecccc-cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCC--------CCEEEEEEcC
Confidence 0 00000 111233344443332 1456799999998652 3444433332222 3445555554
Q ss_pred c-hhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHH
Q 038494 305 S-KHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALS 365 (1209)
Q Consensus 305 ~-~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 365 (1209)
. ..+..........+++.+++.++....+.+.+..... .-..+.+..|++.++|.+--+.
T Consensus 155 ~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi-~i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 155 EPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR-EAEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred ChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 3 3333222345678999999999999999987753222 1235678899999999886443
No 50
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.41 E-value=2.3e-06 Score=91.53 Aligned_cols=176 Identities=14% Similarity=0.176 Sum_probs=107.3
Q ss_pred ccchh--hHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHh
Q 038494 158 FEAFD--SRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDL 235 (1209)
Q Consensus 158 ~~~~~--gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l 235 (1209)
.++|+ +.+..++.+.+++.......+.|+|.+|+|||++|+.+++..... ....++++++.-.. ..
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~------~~---- 81 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQ------AD---- 81 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHH------hH----
Confidence 34555 355577778877666666789999999999999999999887532 33456666543211 00
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC---cc-ccCCCCCCCCccccccccCCcEEEEeccchhhhc-
Q 038494 236 DLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLG---LE-EIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLLT- 310 (1209)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~---~~-~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~- 310 (1209)
..+...+. +.-+||+||++.... |. .+...+... ...+.++|+||+......
T Consensus 82 --------------~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~-------~~~~~~iIits~~~~~~~~ 138 (226)
T TIGR03420 82 --------------PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRV-------REAGGRLLIAGRAAPAQLP 138 (226)
T ss_pred --------------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHH-------HHcCCeEEEECCCChHHCC
Confidence 11112222 234899999987632 22 222111110 013457888887542110
Q ss_pred -------ccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 038494 311 -------NDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVAN 369 (1209)
Q Consensus 311 -------~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 369 (1209)
........+++++++.+|...++...+.... ..-..+..+.|++.++|.|..+.-+..
T Consensus 139 ~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 139 LRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG-LQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred cccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 0111246799999999999999987653211 222356678888889999887776643
No 51
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.41 E-value=1.4e-08 Score=112.55 Aligned_cols=124 Identities=25% Similarity=0.349 Sum_probs=59.7
Q ss_pred CCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCc-ccccCCCCCCEEE
Q 038494 540 CPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDV-AAIGQLKKLEILS 618 (1209)
Q Consensus 540 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l-~~i~~L~~L~~L~ 618 (1209)
+..|..|+++.| ....+|..++ .--|++|-+++|.++.+|+.|+.+.+|..|+.+.|.+..+ ..++.+..|+.|.
T Consensus 120 L~~lt~l~ls~N--qlS~lp~~lC--~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 120 LEALTFLDLSSN--QLSHLPDGLC--DLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLN 195 (722)
T ss_pred hhHHHHhhhccc--hhhcCChhhh--cCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHH
Confidence 344444444444 2333333331 2235555555555555555555555555555555555444 4455555555555
Q ss_pred ccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCC
Q 038494 619 FRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 670 (1209)
Q Consensus 619 l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 670 (1209)
+++|++..+|..+..|+ |..||++. +++..+|-. |.+|+.|++|.+.+|
T Consensus 196 vrRn~l~~lp~El~~Lp-Li~lDfSc-Nkis~iPv~-fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 196 VRRNHLEDLPEELCSLP-LIRLDFSC-NKISYLPVD-FRKMRHLQVLQLENN 244 (722)
T ss_pred HhhhhhhhCCHHHhCCc-eeeeeccc-Cceeecchh-hhhhhhheeeeeccC
Confidence 55555555555544322 45555443 445444433 455555555555443
No 52
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.40 E-value=1.4e-07 Score=107.30 Aligned_cols=263 Identities=18% Similarity=0.067 Sum_probs=143.8
Q ss_pred EEEecCcccc--cccccccCCCCCcEEeccCcccCC-----c-ccccCCCCCCEEEccCCCCCc-------cchhccCCC
Q 038494 571 VLSLSGIHFS--SLSSSLGHLINLQTLCLDWCQLED-----V-AAIGQLKKLEILSFRYSDIKQ-------LPLEIGQLA 635 (1209)
Q Consensus 571 ~L~L~~~~i~--~lp~~i~~l~~L~~L~l~~~~l~~-----l-~~i~~L~~L~~L~l~~~~~~~-------lp~~i~~L~ 635 (1209)
.|+|.++.++ ..+..+..+.+|+.|++++|.++. + ..+...++|++|+++++.+.. ++..+.+++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3566666664 445566778889999999999743 3 456677889999999876552 334567788
Q ss_pred CCCEEeccCCCCCcccCchhhcCCCC---CcEEECCCCCCccccccCCCccchhhhCCC-CCCCEEEeeccCCCCCCccc
Q 038494 636 QLQLLDLSNCSSLVVIAPNVISKFSR---LEELYMGDSFPQWDKVEGGSNASLAELKGL-SKLTTLEIQVQDAQMLPQDL 711 (1209)
Q Consensus 636 ~L~~L~l~~~~~l~~~~~~~l~~L~~---L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l-~~L~~L~l~~~~~~~~~~~~ 711 (1209)
+|+.|++++|...... ...+..+.+ |++|++++|.... .........+..+ ++|+.|+++.+.......
T Consensus 82 ~L~~L~l~~~~~~~~~-~~~~~~l~~~~~L~~L~ls~~~~~~----~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-- 154 (319)
T cd00116 82 GLQELDLSDNALGPDG-CGVLESLLRSSSLQELKLNNNGLGD----RGLRLLAKGLKDLPPALEKLVLGRNRLEGASC-- 154 (319)
T ss_pred ceeEEEccCCCCChhH-HHHHHHHhccCcccEEEeeCCccch----HHHHHHHHHHHhCCCCceEEEcCCCcCCchHH--
Confidence 9999999985433222 233444444 9999988764211 0111122345566 788888887765431100
Q ss_pred ccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhhhHHHHHHHhcccceeeeccccccccccccc-cCCCCccC
Q 038494 712 VFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLLENYGMKMLLKLTEDIRLEELTGVQNVVHEL-DDGEGFPR 790 (1209)
Q Consensus 712 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~l~~ 790 (1209)
..........+.++.|++.++.-.......+ ..+..+++
T Consensus 155 ----------------------------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~ 194 (319)
T cd00116 155 ----------------------------------------EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCN 194 (319)
T ss_pred ----------------------------------------HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCC
Confidence 0000011112345555554432111100000 11233467
Q ss_pred CcEEEEecccCceeeeccCCccccccCCcccEEecccccccchhcccccccc--cccCCccEEEEecCCCcccc---ccH
Q 038494 791 LKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLEAICHSQLRED--QFFSNLKIIEVESCDKLKHL---FSF 865 (1209)
Q Consensus 791 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~--~~l~~L~~L~l~~c~~l~~l---~~~ 865 (1209)
|++|++++|..... ...........+++|+.|++++| .+++.....+... ...+.|++|++++|. ++.. +..
T Consensus 195 L~~L~L~~n~i~~~-~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~ 271 (319)
T cd00116 195 LEVLDLNNNGLTDE-GASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLA 271 (319)
T ss_pred CCEEeccCCccChH-HHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHH
Confidence 88888887752110 00000002334678888888885 4444322221110 013789999999883 3311 111
Q ss_pred HHHhhcccccEEEEeccc
Q 038494 866 SIARNLLRLQKVKVASCN 883 (1209)
Q Consensus 866 ~~~~~l~~L~~L~l~~c~ 883 (1209)
..+..+++|+.++++++.
T Consensus 272 ~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 272 EVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHhcCCCccEEECCCCC
Confidence 234455788888888763
No 53
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.40 E-value=3.8e-08 Score=100.13 Aligned_cols=123 Identities=24% Similarity=0.305 Sum_probs=78.2
Q ss_pred cCCeEEEEccCCCCccCCCcC-CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEe
Q 038494 518 QKGAIAISIPYGDIQELPERL-ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLC 596 (1209)
Q Consensus 518 ~~~~r~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~ 596 (1209)
|+.+..+.+++|.|..+..+. -.|++|.|++++|+ +..+.. +..+.+|..||||+|.++++-..=.+|-|.+.|.
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~--i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR--IRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccc--eeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 445566666677666666554 35677777777663 333332 3556677777777776666555445566667777
Q ss_pred ccCcccCCcccccCCCCCCEEEccCCCCCccc--hhccCCCCCCEEeccC
Q 038494 597 LDWCQLEDVAAIGQLKKLEILSFRYSDIKQLP--LEIGQLAQLQLLDLSN 644 (1209)
Q Consensus 597 l~~~~l~~l~~i~~L~~L~~L~l~~~~~~~lp--~~i~~L~~L~~L~l~~ 644 (1209)
|++|.+..++++++|.+|.+||+++|++..+- .+|++|+.|+++.+.+
T Consensus 359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred hhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 77777776777777777777777777666442 3466777777766666
No 54
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=3.1e-06 Score=98.76 Aligned_cols=197 Identities=12% Similarity=0.178 Sum_probs=115.5
Q ss_pred cccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcccC--CEEEEEEcCCCcCHHHHHHHHHH
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDKVF--DKVVMAEVTENPDVQKIQDKLAS 233 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~s~~~~~~~l~~~i~~ 233 (1209)
...+++|.+..++.|.+++..++. ..+.++|..|+||||+|+.+++.......- .... +.........+.|..
T Consensus 14 tFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~I~a 89 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTEIDA 89 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHHHHc
Confidence 366899999999999999987665 456899999999999999999877531100 0000 000000011111110
Q ss_pred H-----hCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEe
Q 038494 234 D-----LDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILT 302 (1209)
Q Consensus 234 ~-----l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvT 302 (1209)
. +..+... ....+.++.+.+.+. .++.-++|+|+++... .++.+...+-... .+.++|++
T Consensus 90 G~hpDviEIdAas-~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP--------~~v~FILa 160 (700)
T PRK12323 90 GRFVDYIEMDAAS-NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP--------EHVKFILA 160 (700)
T ss_pred CCCCcceEecccc-cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCC--------CCceEEEE
Confidence 0 0000000 011333444444432 3566799999999773 4455544332222 44555554
Q ss_pred cc-chhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 303 SR-SKHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 303 tR-~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
|. ...+..........+.+..++.++..+.+.+.+..... ....+..+.|++.++|.|.....+
T Consensus 161 Ttep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi-~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 161 TTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI-AHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred eCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 44 44444333455678999999999999999887653221 122456678999999988644433
No 55
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=5e-06 Score=94.79 Aligned_cols=195 Identities=13% Similarity=0.182 Sum_probs=113.4
Q ss_pred cccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHh
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDL 235 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l 235 (1209)
...+++|.+..++.+..++..++. ..+.++|+.|+||||+|+.+++.......... .+.......+.+....
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~~~~~~~ 86 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICKEIEKGL 86 (363)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHHHHhcCC
Confidence 356789999999999998886654 46789999999999999999988753211100 0000000111111110
Q ss_pred CCCC----CCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccc
Q 038494 236 DLNF----DLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRS 305 (1209)
Q Consensus 236 ~~~~----~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~ 305 (1209)
..+. .......+.++.+.+.+. .+++-++|+|+++... .++.+...+.... ...++|++|.+
T Consensus 87 ~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~--------~~~~fIl~t~~ 158 (363)
T PRK14961 87 CLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPP--------QHIKFILATTD 158 (363)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCC--------CCeEEEEEcCC
Confidence 0000 000011233444444432 2355699999998764 3444433333222 45667776654
Q ss_pred hh-hhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 306 KH-LLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 306 ~~-v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
.. +.....+....+++.+++.++..+.+...+.... ..-.++.++.|++.++|.|-.+...
T Consensus 159 ~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g-~~i~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 159 VEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES-IDTDEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred hHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 33 3222234457899999999999998888664322 1223466778999999988644333
No 56
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.38 E-value=5.5e-07 Score=97.80 Aligned_cols=291 Identities=22% Similarity=0.238 Sum_probs=180.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcC
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKE 259 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 259 (1209)
.+.+.++|.|||||||++-++.+ .+.. +-+.+.++....-.+...+.-.+...++...... +.....+..++. +
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~~~~-~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~-~ 87 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-AASE-YADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIG-D 87 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-Hhhh-cccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHh-h
Confidence 57899999999999999999999 4432 2357777888777788888887777787665432 334445666665 6
Q ss_pred CeEEEEEeCCCccc-CccccCCCCCCCCccccccccCCcEEEEeccchhhhcccCCcceEEEcCCCCHH-HHHHHHHHHh
Q 038494 260 KRVLIILDNIWKKL-GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLLTNDMNSQKIFLIEVLSKE-EALQFFEKIV 337 (1209)
Q Consensus 260 k~~LlvlDdv~~~~-~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~~~~~~l~~L~~~-e~~~lf~~~~ 337 (1209)
+|.++|+||..... +-..+.-.+-.+. +.-.++.|+|.... ........+++|+.- ++.++|...+
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~--------~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra 155 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGAC--------PRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRA 155 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccc--------hhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHH
Confidence 89999999987652 1111111111111 45568888887643 234456677777654 7899988776
Q ss_pred CCCC----CCCcchHHHHHHHHHhCCChhHHHHHHHHHhcCChhHHHHHHH----HHhcCCCccccCccccceeeeEEec
Q 038494 338 GNSA----KASAFQPLADEIVGKCGGLPVALSTVANALKNKKLPVWKDALT----QLRNSNPREIHGMDANVCSSIELSY 409 (1209)
Q Consensus 338 ~~~~----~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~~~----~l~~~~~~~~~~~~~~v~~~l~~sy 409 (1209)
.... -.......+.+|.++.+|.|++|..+++..+........+.++ .+... .....--.......+.+||
T Consensus 156 ~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~ 234 (414)
T COG3903 156 VLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSY 234 (414)
T ss_pred HHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhh
Confidence 4211 1223356788999999999999999999998765443322222 11111 1111112345678899999
Q ss_pred ccCCchhHHHHHHHhcccCcCccccHHHHHHhhhhhccccccHHHHHHHHHHHHHHHHhcccccCC--CCCCceEehhHH
Q 038494 410 NFLESDEAKSLFLLCTLFGEGTPIQVASLLRYGKGLFKNVRTLENARNRVDALIDNLKASCLLLDG--DAEDEVKMHDVI 487 (1209)
Q Consensus 410 ~~L~~~~~k~c~~~~s~fp~~~~i~~~~li~~~~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~--~~~~~~~mHdlv 487 (1209)
.-|... .+..|.-++.|...+.-..... .+-|- ......-.....+..+++.+++... .....|+.-+-+
T Consensus 235 ~lLtgw-e~~~~~rLa~~~g~f~~~l~~~--~a~g~-----~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~ 306 (414)
T COG3903 235 ALLTGW-ERALFGRLAVFVGGFDLGLALA--VAAGA-----DVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETG 306 (414)
T ss_pred HhhhhH-HHHHhcchhhhhhhhcccHHHH--HhcCC-----ccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHH
Confidence 999988 7888999999988554432222 12220 0000111122234446667766432 223356666666
Q ss_pred HHHHHHHhhc
Q 038494 488 HVVAVSIASE 497 (1209)
Q Consensus 488 ~~~~~~~~~~ 497 (1209)
|.|+..+..+
T Consensus 307 r~YalaeL~r 316 (414)
T COG3903 307 RRYALAELHR 316 (414)
T ss_pred HHHHHHHHHh
Confidence 7776655543
No 57
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=7e-06 Score=96.42 Aligned_cols=181 Identities=16% Similarity=0.217 Sum_probs=111.5
Q ss_pred ccccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcc-------------------cCCEEEE
Q 038494 156 KDFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDK-------------------VFDKVVM 215 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~~w 215 (1209)
....+++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++...... .|..+++
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 3466889999999999999987654 4577999999999999999998764311 1222333
Q ss_pred EEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccc
Q 038494 216 AEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKD 289 (1209)
Q Consensus 216 v~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~ 289 (1209)
+.......+ +.++.+.+.+. .+++-++|+|+++... .++.+...+-...
T Consensus 93 idaas~~gv----------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp--- 147 (546)
T PRK14957 93 IDAASRTGV----------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPP--- 147 (546)
T ss_pred eecccccCH----------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCC---
Confidence 332222222 22222322222 2466799999998653 3444433332222
Q ss_pred cccccCCcEEEE-eccchhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChh-HHHHH
Q 038494 290 RKQDLRRRTIIL-TSRSKHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPV-ALSTV 367 (1209)
Q Consensus 290 ~~~~~~~s~ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~ 367 (1209)
....+|+ ||....+..........+++.+++.++....+.+.+.... ..-.++....|++.++|-+- |+..+
T Consensus 148 -----~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 148 -----EYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred -----CCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3555554 5443333322234567899999999998888887654322 22335567789999998654 44444
No 58
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=3.5e-06 Score=96.00 Aligned_cols=193 Identities=15% Similarity=0.147 Sum_probs=115.8
Q ss_pred ccccchhhHHHHHHHHHHHHhCCCce-EEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHH
Q 038494 156 KDFEAFDSRMKLFQDVVEALRNDKLN-IIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASD 234 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~ 234 (1209)
....+++|.+..+..|..++..++.. .+.++|+.|+||||+|+.+++.......... ..+.....- ..+...
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC----~~i~~g 87 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSC----LEITKG 87 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHH----HHHHcc
Confidence 34678999999999999999877654 5789999999999999999988754221111 111111111 112111
Q ss_pred hCCCC---CC-CCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCccccCCCCCCCCccccccccCCcEEEEec-
Q 038494 235 LDLNF---DL-NDSKPHRAKQLCQRLT----KEKRVLIILDNIWKK--LGLEEIGIPFGDVDEKDRKQDLRRRTIILTS- 303 (1209)
Q Consensus 235 l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTt- 303 (1209)
...+. +. .....+.++.+.+.+. .++.-++|+|+++.. ..++.+...+-... ....+|.+|
T Consensus 88 ~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp--------~~viFILaTt 159 (484)
T PRK14956 88 ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPP--------AHIVFILATT 159 (484)
T ss_pred CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCC--------CceEEEeecC
Confidence 11110 00 0111333444444433 356679999999976 34555544332211 344444444
Q ss_pred cchhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHH
Q 038494 304 RSKHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVAL 364 (1209)
Q Consensus 304 R~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 364 (1209)
....+..........|.+.+++.++..+.+.+.+.... ..-..+....|++.++|.+--.
T Consensus 160 e~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg-i~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 160 EFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN-VQYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred ChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCChHHHH
Confidence 44444333345567899999999999999988765322 2223567789999999987543
No 59
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.36 E-value=1.5e-06 Score=83.86 Aligned_cols=94 Identities=20% Similarity=0.332 Sum_probs=71.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcc---cCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDK---VFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQR 255 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~---~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 255 (1209)
+.+.+.|+|.+|+|||+++++++++..... .-..++|+.+....+...+...+++.++..........+..+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 346899999999999999999998875311 12467799998888999999999999998877644446677888888
Q ss_pred HhcCCeEEEEEeCCCcc
Q 038494 256 LTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 256 l~~~k~~LlvlDdv~~~ 272 (1209)
+.+.+..+||+||++..
T Consensus 83 l~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHHCTEEEEEEETTHHH
T ss_pred HHhcCCeEEEEeChHhc
Confidence 88666789999999876
No 60
>PF13173 AAA_14: AAA domain
Probab=98.35 E-value=1.2e-06 Score=83.56 Aligned_cols=120 Identities=26% Similarity=0.253 Sum_probs=80.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcC
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKE 259 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 259 (1209)
.+++.|.|+.|+||||++++++++.. ....++++++.+........ .+..+.+.+... .
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~-----------------~~~~~~~~~~~~-~ 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD-----------------PDLLEYFLELIK-P 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh-----------------hhhHHHHHHhhc-c
Confidence 36899999999999999999998876 23567788776643211100 001122222222 3
Q ss_pred CeEEEEEeCCCcccCccccCCCCCCCCccccccccCCcEEEEeccchhhhc-----ccCCcceEEEcCCCCHHH
Q 038494 260 KRVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLLT-----NDMNSQKIFLIEVLSKEE 328 (1209)
Q Consensus 260 k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~-----~~~~~~~~~~l~~L~~~e 328 (1209)
++.+|++|++.....|......+.+.. +..+|++|+....... ...+....++|.||+..|
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~--------~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNG--------PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhc--------cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 668899999999988877655555433 5688999998765442 123455688999999877
No 61
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.33 E-value=2.5e-08 Score=110.56 Aligned_cols=177 Identities=23% Similarity=0.292 Sum_probs=121.2
Q ss_pred eEEEEccCCCCccCCCcC-CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccC
Q 038494 521 AIAISIPYGDIQELPERL-ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDW 599 (1209)
Q Consensus 521 ~r~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~ 599 (1209)
.....++.|.+.++|... .|..|..+.+..| .+..++..+ .++..|.+|||+.|++..+|..++.|+ |++|-+++
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n--~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHN--CIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhc--cceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 334455556666666544 3555666666555 345555544 677778888888888888887777775 78888888
Q ss_pred cccCCc-ccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCcccccc
Q 038494 600 CQLEDV-AAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVE 678 (1209)
Q Consensus 600 ~~l~~l-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 678 (1209)
|+++.+ ..++.+.+|..||.+.|.+..+|..++.+.+|+.|.++. +.+..+|++ +. .-.|..|+++.|.+
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~-~LpLi~lDfScNki------ 223 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LC-SLPLIRLDFSCNKI------ 223 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-Hh-CCceeeeecccCce------
Confidence 887777 777777778888888888878888888888888887777 666677766 55 33577777766532
Q ss_pred CCCccchhhhCCCCCCCEEEeeccCCCCCCccccc
Q 038494 679 GGSNASLAELKGLSKLTTLEIQVQDAQMLPQDLVF 713 (1209)
Q Consensus 679 ~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~~~ 713 (1209)
......+.+|..|++|.+.+|.....|..+..
T Consensus 224 ---s~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 224 ---SYLPVDFRKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred ---eecchhhhhhhhheeeeeccCCCCCChHHHHh
Confidence 22234567777788888888777777666533
No 62
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=1.1e-05 Score=94.30 Aligned_cols=195 Identities=16% Similarity=0.179 Sum_probs=112.7
Q ss_pred cccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcccCCE-EEEEEcCCCcCHHHHHHHHHHH
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDK-VVMAEVTENPDVQKIQDKLASD 234 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~s~~~~~~~l~~~i~~~ 234 (1209)
...+++|.+..+..|...+..+.. ..+.++|+.|+||||+|+.+++.......... -.+..+... .-...+...
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i~~~ 94 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISFNNH 94 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHHhcC
Confidence 366889999999988887776553 57889999999999999999988753211100 000000000 000111100
Q ss_pred hCCCC---C-CCCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCccccCCCCCCCCccccccccCCcEEEE-ec
Q 038494 235 LDLNF---D-LNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKK--LGLEEIGIPFGDVDEKDRKQDLRRRTIIL-TS 303 (1209)
Q Consensus 235 l~~~~---~-~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilv-Tt 303 (1209)
...+. + ......+.++.+.+... .+++-++|+|+++.. ..++.+...+.... ....+|+ ||
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp--------~~~vfI~aTt 166 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPP--------PHIIFIFATT 166 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcC--------CCEEEEEEeC
Confidence 00000 0 00011233333333332 246678999999876 34555544333222 4555554 44
Q ss_pred cchhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHH
Q 038494 304 RSKHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVAL 364 (1209)
Q Consensus 304 R~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 364 (1209)
+...+..........+++.+++.++....+.+.+..... .-..+....|++.++|.+--+
T Consensus 167 e~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi-~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 167 EVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL-KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred ChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 444444333345578999999999999999988863322 122456778999999976544
No 63
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=3.9e-05 Score=91.66 Aligned_cols=196 Identities=13% Similarity=0.160 Sum_probs=115.4
Q ss_pred cccchhhHHHHHHHHHHHHhCCCce-EEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHh
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLN-IIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDL 235 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l 235 (1209)
...+++|.+..++.|...+..+... .+.++|..|+||||+|+.+++.......+.. .........+.|...-
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-------~pCg~C~~C~~i~~g~ 86 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-------TPCGECDNCREIEQGR 86 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-------CCCCCCHHHHHHHcCC
Confidence 3678999999999999998876653 4679999999999999999987754211100 0111111112221110
Q ss_pred CCCC---CCC-CChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccc
Q 038494 236 DLNF---DLN-DSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRS 305 (1209)
Q Consensus 236 ~~~~---~~~-~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~ 305 (1209)
..+. +.. ....+.++.+.+.+. .+++-++|+|+++... ..+.+...+-... ...++|++|.+
T Consensus 87 ~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp--------~~v~FIL~Tt~ 158 (647)
T PRK07994 87 FVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP--------EHVKFLLATTD 158 (647)
T ss_pred CCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCC--------CCeEEEEecCC
Confidence 0000 000 011334444444433 3566799999998763 3444433222211 34555555544
Q ss_pred -hhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHH
Q 038494 306 -KHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVA 368 (1209)
Q Consensus 306 -~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 368 (1209)
..+..........+.+.+++.++....+.+.+.... .....+....|++.++|.+-.+..+.
T Consensus 159 ~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~-i~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 159 PQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ-IPFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred ccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 433333334568999999999999999988764222 22234566789999999876444443
No 64
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=1.3e-05 Score=89.81 Aligned_cols=177 Identities=16% Similarity=0.238 Sum_probs=114.5
Q ss_pred ccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHh----hcccCCEEEEEEc-CCCcCHHHHHHHH
Q 038494 158 FEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVM----EDKVFDKVVMAEV-TENPDVQKIQDKL 231 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~----~~~~f~~~~wv~~-s~~~~~~~l~~~i 231 (1209)
...++|.+..++.+.+++..+.. ....++|+.|+||||+|+.+++... ...|+|...|... +....+.++ +++
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~ 81 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNI 81 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHH
Confidence 34678988889999999986654 5668999999999999999998763 2356676666552 222333332 222
Q ss_pred HHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcc--cCccccCCCCCCCCccccccccCCcEEEEeccchhhh
Q 038494 232 ASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKK--LGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLL 309 (1209)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 309 (1209)
.+.+.... . .+++-++|+|+++.. ..++.+...+.... .++.+|++|.+.+..
T Consensus 82 ~~~~~~~p----------------~-~~~~kv~iI~~ad~m~~~a~naLLK~LEepp--------~~t~~il~~~~~~~l 136 (313)
T PRK05564 82 IEEVNKKP----------------Y-EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPP--------KGVFIILLCENLEQI 136 (313)
T ss_pred HHHHhcCc----------------c-cCCceEEEEechhhcCHHHHHHHHHHhcCCC--------CCeEEEEEeCChHhC
Confidence 22221100 0 134556777776544 45666655554333 678888888765432
Q ss_pred -cccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHH
Q 038494 310 -TNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALS 365 (1209)
Q Consensus 310 -~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 365 (1209)
.+.......+.+.++++++....+.+.... ...+.++.++..++|.|..+.
T Consensus 137 l~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 137 LDTIKSRCQIYKLNRLSKEEIEKFISYKYND-----IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred cHHHHhhceeeeCCCcCHHHHHHHHHHHhcC-----CCHHHHHHHHHHcCCCHHHHH
Confidence 222345679999999999998888766421 123457788999999987554
No 65
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.31 E-value=1.3e-05 Score=91.03 Aligned_cols=185 Identities=12% Similarity=0.146 Sum_probs=109.7
Q ss_pred ccccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEc--CCCcCHHHHHHHHHH
Q 038494 156 KDFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEV--TENPDVQKIQDKLAS 233 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~--s~~~~~~~l~~~i~~ 233 (1209)
....+++|+++.++.+.+++.....+.+.++|.+|+||||+|+.+++...... +. ..++.+ +.......+ ...+.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~-~~~i~~~~~~~~~~~~~-~~~i~ 90 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WR-ENFLELNASDERGIDVI-RNKIK 90 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cc-cceEEeccccccchHHH-HHHHH
Confidence 34667899999999999999877777789999999999999999998875432 21 122222 222221111 11111
Q ss_pred HhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccchh-hhc
Q 038494 234 DLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKH-LLT 310 (1209)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-v~~ 310 (1209)
.+..... .....+-+|++|+++... ..+.+...+.... ..+++|+++.... +..
T Consensus 91 ~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~--------~~~~lIl~~~~~~~l~~ 147 (319)
T PRK00440 91 EFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS--------QNTRFILSCNYSSKIID 147 (319)
T ss_pred HHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC--------CCCeEEEEeCCccccch
Confidence 1100000 001235689999987652 2223322222212 4556777664322 211
Q ss_pred ccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 311 NDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 311 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
........+++.+++.++....+...+..... .-.++.+..+++.++|.+--+...
T Consensus 148 ~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~-~i~~~al~~l~~~~~gd~r~~~~~ 203 (319)
T PRK00440 148 PIQSRCAVFRFSPLKKEAVAERLRYIAENEGI-EITDDALEAIYYVSEGDMRKAINA 203 (319)
T ss_pred hHHHHhheeeeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 11223457899999999999998887753221 123567889999999987654443
No 66
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=5.4e-05 Score=85.16 Aligned_cols=202 Identities=18% Similarity=0.177 Sum_probs=128.0
Q ss_pred cchhhHHHHHHHHHHHHh----CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHH
Q 038494 159 EAFDSRMKLFQDVVEALR----NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASD 234 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~ 234 (1209)
+.+.+|+++++++...|. .....-+.|+|.+|+|||+.++.+.+..+....=..+++|++..-.+..+++..|++.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 348899999999998876 2333348999999999999999999998764222227999999999999999999999
Q ss_pred hCCCCCCCCChHHHHHHHHHHHhc-CCeEEEEEeCCCcccCcc--ccCCCCCCCCccccccccCCcEEEE--eccchhhh
Q 038494 235 LDLNFDLNDSKPHRAKQLCQRLTK-EKRVLIILDNIWKKLGLE--EIGIPFGDVDEKDRKQDLRRRTIIL--TSRSKHLL 309 (1209)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~~~~--~l~~~~~~~~~~~~~~~~~~s~ilv--TtR~~~v~ 309 (1209)
++..........+....+.+.+.. ++.++||||+++....-. -+-..+.... ...++|+| .+-+....
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~-------~~~~~v~vi~i~n~~~~~ 169 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPG-------ENKVKVSIIAVSNDDKFL 169 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcc-------ccceeEEEEEEeccHHHH
Confidence 963333233335666777777763 678999999998763321 1111111111 02343333 33332211
Q ss_pred cc------cCCcceEEEcCCCCHHHHHHHHHHHhCC----CCCCCcchHHHHHHHHHhC-CChhHHHHH
Q 038494 310 TN------DMNSQKIFLIEVLSKEEALQFFEKIVGN----SAKASAFQPLADEIVGKCG-GLPVALSTV 367 (1209)
Q Consensus 310 ~~------~~~~~~~~~l~~L~~~e~~~lf~~~~~~----~~~~~~~~~~~~~i~~~~~-glPLai~~~ 367 (1209)
.. ..-....+..+|-+.+|-.+.+..++.. ....++.-+.+..++..-+ -.-.||.++
T Consensus 170 ~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 170 DYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred HHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 10 0112345889999999999999988752 1222333333444444444 445555554
No 67
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.2e-05 Score=93.71 Aligned_cols=184 Identities=14% Similarity=0.229 Sum_probs=110.4
Q ss_pred ccccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhccc-------------------CCEEEE
Q 038494 156 KDFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDKV-------------------FDKVVM 215 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~~~w 215 (1209)
.....++|.+.....|...+..+.. ..+.++|++|+||||+|+.+++....... +..++.
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 3466899999888888888877666 45789999999999999999987643211 011222
Q ss_pred EEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccc
Q 038494 216 AEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKD 289 (1209)
Q Consensus 216 v~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~ 289 (1209)
++.+...... .++.+.+... .+++-++|+|+++... ..+.+...+....
T Consensus 91 l~aa~~~gid----------------------~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~--- 145 (472)
T PRK14962 91 LDAASNRGID----------------------EIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPP--- 145 (472)
T ss_pred EeCcccCCHH----------------------HHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCC---
Confidence 2322222222 2222222221 1456799999998652 3333333322211
Q ss_pred cccccCCcEEEEeccc-hhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCC-ChhHHHHH
Q 038494 290 RKQDLRRRTIILTSRS-KHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGG-LPVALSTV 367 (1209)
Q Consensus 290 ~~~~~~~s~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPLai~~~ 367 (1209)
....+|++|.+ ..+..........+++.+++.++....+.+.+..... .-..+....|++.++| ++.|+..+
T Consensus 146 -----~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~L 219 (472)
T PRK14962 146 -----SHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTML 219 (472)
T ss_pred -----CcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 23444444433 3333323345678999999999999998887742221 2234667789988865 46666666
Q ss_pred HHH
Q 038494 368 ANA 370 (1209)
Q Consensus 368 ~~~ 370 (1209)
-..
T Consensus 220 e~l 222 (472)
T PRK14962 220 EQV 222 (472)
T ss_pred HHH
Confidence 543
No 68
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=1.7e-05 Score=88.75 Aligned_cols=198 Identities=13% Similarity=0.153 Sum_probs=119.2
Q ss_pred ccccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhccc--CCEEEEEEcCCCcCHHHHHHHHH
Q 038494 156 KDFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDKV--FDKVVMAEVTENPDVQKIQDKLA 232 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~--f~~~~wv~~s~~~~~~~l~~~i~ 232 (1209)
.....++|.++....+...+..+.. ..+.|+|+.|+||||+|..+++..-.... +... ............+.+.
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIA 96 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHH
Confidence 3466789999999999999987664 45889999999999999999988754211 1111 0111111112333333
Q ss_pred HHhC-------CCCCC------CCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccc
Q 038494 233 SDLD-------LNFDL------NDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQD 293 (1209)
Q Consensus 233 ~~l~-------~~~~~------~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~ 293 (1209)
..-. .+.+. ..-..+.++.+.+.+. .+++-++|+|+++... ..+.+...+-...
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp------- 169 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP------- 169 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC-------
Confidence 2211 01000 1112456666776665 3567799999998763 2333322222111
Q ss_pred cCCcE-EEEeccchhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 294 LRRRT-IILTSRSKHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 294 ~~~s~-ilvTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
.+.. |++|++...+..........+.+.+++.++..+++.+...... -..+.+..|++.++|.|.....+
T Consensus 170 -~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 170 -ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred -CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2334 4555444444333334557999999999999999988532211 22456779999999999866544
No 69
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=1.2e-05 Score=90.49 Aligned_cols=195 Identities=12% Similarity=0.097 Sum_probs=116.5
Q ss_pred cccchhhHHHHHHHHHHHHhCCCce-EEEEEcCCCChHHHHHHHHHHHHhhcccCCEEE------EEEcCCCcCHHHHHH
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLN-IIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVV------MAEVTENPDVQKIQD 229 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~------wv~~s~~~~~~~l~~ 229 (1209)
....++|.++.++.+.+.+..+..+ .+.++|+.|+||+|+|..+++..-.+....... =..+.... ...+
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~~c~ 93 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---PVAR 93 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---hHHH
Confidence 3567899999999999999876654 588999999999999999998875432111000 00000000 1111
Q ss_pred HHHHHhCCC---------CC----CCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCcccc
Q 038494 230 KLASDLDLN---------FD----LNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDR 290 (1209)
Q Consensus 230 ~i~~~l~~~---------~~----~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~ 290 (1209)
.+...-..+ .. ...-..++++.+.+.+. .+.+.++|+||++..+ ....+...+-...
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp---- 169 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP---- 169 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC----
Confidence 111111000 00 01112456666666664 3566799999998763 2333332222211
Q ss_pred ccccCCcEEEEeccch-hhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 291 KQDLRRRTIILTSRSK-HLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 291 ~~~~~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
.+..+|++|.+. .+..........+.+.+++.++..+++.+.... . ..+....+++.++|.|+....+
T Consensus 170 ----~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~--~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 170 ----ARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---L--PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred ----CCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---C--CHHHHHHHHHHcCCCHHHHHHH
Confidence 355666666654 333333455679999999999999999876431 1 1222368899999999865444
No 70
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.25 E-value=3.9e-05 Score=81.45 Aligned_cols=192 Identities=16% Similarity=0.181 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHhC---CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCC----EEEEEEcCCCcCHHHHHHHHHHHhC
Q 038494 164 RMKLFQDVVEALRN---DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFD----KVVMAEVTENPDVQKIQDKLASDLD 236 (1209)
Q Consensus 164 R~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~----~~~wv~~s~~~~~~~l~~~i~~~l~ 236 (1209)
-.+.++.+.+.+.. ...+-+.|+|.+|+|||+++++++........-+ .|+.|.+....+...++..|+.+++
T Consensus 42 A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 42 AKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 34455666666653 3346789999999999999999998775431111 4777888899999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC------------ccccCCCCCCCCccccccccCCcEEEEecc
Q 038494 237 LNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLG------------LEEIGIPFGDVDEKDRKQDLRRRTIILTSR 304 (1209)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~------------~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 304 (1209)
.+.............+...+..-+--+||+|++.+.-. +..+...+ .=+-|.|-|+
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL------------~ipiV~vGt~ 189 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL------------QIPIVGVGTR 189 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc------------CCCeEEeccH
Confidence 98766655444444444555544557899999987521 12222222 3455777777
Q ss_pred chhhhcc----cCCcceEEEcCCCCHHHHHHHHHHHhC-----CCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 305 SKHLLTN----DMNSQKIFLIEVLSKEEALQFFEKIVG-----NSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 305 ~~~v~~~----~~~~~~~~~l~~L~~~e~~~lf~~~~~-----~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
...-+-. .......+.++.+..++-+.-|..... .....-...++++.|...++|+.--+..+
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 6533311 012346778888876654433333221 22222345789999999999987655544
No 71
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.24 E-value=4.5e-06 Score=87.79 Aligned_cols=177 Identities=14% Similarity=0.232 Sum_probs=109.0
Q ss_pred ccccccchhhHHHHHH---HHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHH
Q 038494 154 QAKDFEAFDSRMKLFQ---DVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDK 230 (1209)
Q Consensus 154 ~~~~~~~~~gR~~~~~---~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~ 230 (1209)
.+....++||.+..+. -|.+.++.+..+.+.+||++|+||||||+.++...+... ..||..|-...-..-.+.
T Consensus 133 RPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ 208 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRD 208 (554)
T ss_pred CcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHH
Confidence 3444667777665443 355566678889999999999999999999998876543 457777654433333333
Q ss_pred HHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEE--eccch
Q 038494 231 LASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIIL--TSRSK 306 (1209)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilv--TtR~~ 306 (1209)
|.++-. . ...+ .++|.+|++|.|..-. +-+.+. |... .|..++| ||.+.
T Consensus 209 ife~aq--------------~-~~~l-~krkTilFiDEiHRFNksQQD~fL---P~VE--------~G~I~lIGATTENP 261 (554)
T KOG2028|consen 209 IFEQAQ--------------N-EKSL-TKRKTILFIDEIHRFNKSQQDTFL---PHVE--------NGDITLIGATTENP 261 (554)
T ss_pred HHHHHH--------------H-HHhh-hcceeEEEeHHhhhhhhhhhhccc---ceec--------cCceEEEecccCCC
Confidence 333211 0 1112 2588999999998663 223332 2222 6777777 56554
Q ss_pred hhh--cccCCcceEEEcCCCCHHHHHHHHHHHhC---CC------CCCC---cchHHHHHHHHHhCCCh
Q 038494 307 HLL--TNDMNSQKIFLIEVLSKEEALQFFEKIVG---NS------AKAS---AFQPLADEIVGKCGGLP 361 (1209)
Q Consensus 307 ~v~--~~~~~~~~~~~l~~L~~~e~~~lf~~~~~---~~------~~~~---~~~~~~~~i~~~~~glP 361 (1209)
..- ........++-+++|+.++...++.+... +. .+.+ -...+..-++..|+|-.
T Consensus 262 SFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 262 SFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred ccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 321 11245668999999999999999988442 11 1111 12335556667777754
No 72
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.24 E-value=4.9e-05 Score=76.84 Aligned_cols=184 Identities=19% Similarity=0.235 Sum_probs=92.1
Q ss_pred ccccccchhhHHHHHHHHHHHHh-----CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHH
Q 038494 154 QAKDFEAFDSRMKLFQDVVEALR-----NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQ 228 (1209)
Q Consensus 154 ~~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~ 228 (1209)
.|....+|+|.+..+..+.-++. ++....+.+||++|+||||||.-+++..... | .+.+...-....++
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~---~~~sg~~i~k~~dl- 92 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--F---KITSGPAIEKAGDL- 92 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----E---EEEECCC--SCHHH-
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--e---EeccchhhhhHHHH-
Confidence 34457789999888877654443 2345778999999999999999999998754 3 23332211111211
Q ss_pred HHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc---------CccccCC--CCCCCCccccc-cccCC
Q 038494 229 DKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL---------GLEEIGI--PFGDVDEKDRK-QDLRR 296 (1209)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~---------~~~~l~~--~~~~~~~~~~~-~~~~~ 296 (1209)
..+...+. ++.+|.+|++.... ..|+... ..+.+..+... -..+.
T Consensus 93 ---------------------~~il~~l~--~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 93 ---------------------AAILTNLK--EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ---------------------HHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ---------------------HHHHHhcC--CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 12222232 34577778877552 1121111 11111100000 00112
Q ss_pred -cEEEEeccchhhhcccCCc-ceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 297 -RTIILTSRSKHLLTNDMNS-QKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 297 -s~ilvTtR~~~v~~~~~~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
+-|=-|||...+....... ..+.+++..+.+|-.++..+.+.-- .-+-.++.+.+|++++.|-|--..-+
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l-~i~i~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL-NIEIDEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT-T-EE-HHHHHHHHHCTTTSHHHHHHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh-CCCcCHHHHHHHHHhcCCChHHHHHH
Confidence 2233477765443221222 2456899999999999998876421 22233678899999999999644433
No 73
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=1.2e-05 Score=94.28 Aligned_cols=192 Identities=13% Similarity=0.175 Sum_probs=109.8
Q ss_pred ccccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHH
Q 038494 156 KDFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASD 234 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~ 234 (1209)
....+++|++..++.+.+++..+.. +.+.++|+.|+||||+|+.+++...... |... .........+.+...
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~~~ 85 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESINTN 85 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHHcC
Confidence 3466899999999999999876554 4688999999999999999998875422 1111 011111111222111
Q ss_pred hCCCC---C-CCCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCccccCCCCCCCCccccccccCCcEEEEec-
Q 038494 235 LDLNF---D-LNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKK--LGLEEIGIPFGDVDEKDRKQDLRRRTIILTS- 303 (1209)
Q Consensus 235 l~~~~---~-~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTt- 303 (1209)
...+. + ......+.++.+.+... .+++-++|+|+++.. ..+..+...+.... ....+|++|
T Consensus 86 ~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp--------~~tvfIL~Tt 157 (605)
T PRK05896 86 QSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPP--------KHVVFIFATT 157 (605)
T ss_pred CCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCC--------CcEEEEEECC
Confidence 11000 0 00011233444443332 124457999999865 23444433222111 344555444
Q ss_pred cchhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhH
Q 038494 304 RSKHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVA 363 (1209)
Q Consensus 304 R~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 363 (1209)
....+..........+++.+++.++....+...+..... .-..+.+..+++.++|.+-.
T Consensus 158 ~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~Is~eal~~La~lS~GdlR~ 216 (605)
T PRK05896 158 EFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-KIEDNAIDKIADLADGSLRD 216 (605)
T ss_pred ChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHH
Confidence 333333222344578999999999999988887643221 12245677899999996643
No 74
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.23 E-value=9.4e-06 Score=99.05 Aligned_cols=173 Identities=17% Similarity=0.260 Sum_probs=101.3
Q ss_pred cccccchhhHHHHHH---HHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHH
Q 038494 155 AKDFEAFDSRMKLFQ---DVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKL 231 (1209)
Q Consensus 155 ~~~~~~~~gR~~~~~---~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i 231 (1209)
+....+|+|++..+. .+.+.+..+....+.++|++|+||||+|+.+++.... +|.. ++... ....++
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~--~f~~---lna~~-~~i~di---- 93 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA--HFSS---LNAVL-AGVKDL---- 93 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC--ccee---ehhhh-hhhHHH----
Confidence 444678999988774 5667777777778899999999999999999987643 2311 11110 011110
Q ss_pred HHHhCCCCCCCCChHHHHHHHHHHHh-cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEe--ccch
Q 038494 232 ASDLDLNFDLNDSKPHRAKQLCQRLT-KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILT--SRSK 306 (1209)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvT--tR~~ 306 (1209)
.+........+. .+++.+||+||++... +++.+..... .|..++|+ |.+.
T Consensus 94 --------------r~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE-----------~g~IiLI~aTTenp 148 (725)
T PRK13341 94 --------------RAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE-----------NGTITLIGATTENP 148 (725)
T ss_pred --------------HHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc-----------CceEEEEEecCCCh
Confidence 111112211221 1466899999998653 3444432221 34445553 3332
Q ss_pred h--hhcccCCcceEEEcCCCCHHHHHHHHHHHhCC------CCCCCcchHHHHHHHHHhCCChh
Q 038494 307 H--LLTNDMNSQKIFLIEVLSKEEALQFFEKIVGN------SAKASAFQPLADEIVGKCGGLPV 362 (1209)
Q Consensus 307 ~--v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~------~~~~~~~~~~~~~i~~~~~glPL 362 (1209)
. +..........+.+++++.++...++.+.+.. .....-.++....|++.++|..-
T Consensus 149 ~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 149 YFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 1 11111233567999999999999999887641 11122235566788888877643
No 75
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=1.3e-05 Score=94.95 Aligned_cols=180 Identities=12% Similarity=0.194 Sum_probs=111.1
Q ss_pred cccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcccC-------------------CEEEEE
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDKVF-------------------DKVVMA 216 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f-------------------~~~~wv 216 (1209)
...+++|.+..++.|..++..++. ..+.++|..|+||||+|+.+++........ ..++.+
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 367899999999999999987664 467899999999999999999876432111 111122
Q ss_pred EcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCcccc
Q 038494 217 EVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDR 290 (1209)
Q Consensus 217 ~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~ 290 (1209)
+.+.... .+.++.+..... .+++-++|+|+++... ..+.+...+-...
T Consensus 94 daAs~~g----------------------Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp---- 147 (709)
T PRK08691 94 DAASNTG----------------------IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPP---- 147 (709)
T ss_pred eccccCC----------------------HHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCC----
Confidence 2111111 223333333221 2466799999998653 2333322222111
Q ss_pred ccccCCcEEEEeccch-hhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 291 KQDLRRRTIILTSRSK-HLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 291 ~~~~~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
...++|++|.+. .+.....+....+.+.+++.++....+.+.+..... .-..+.++.|++.++|.+.-+..+
T Consensus 148 ----~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi-~id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 148 ----EHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI-AYEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred ----CCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHhCCCHHHHHHH
Confidence 455666666543 232222244567889999999999999887753221 223567789999999987544443
No 76
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=3.5e-07 Score=98.68 Aligned_cols=189 Identities=22% Similarity=0.123 Sum_probs=123.6
Q ss_pred cCCeEEEEccCCCCccCC---CcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCccccccccc--ccCCCCC
Q 038494 518 QKGAIAISIPYGDIQELP---ERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSS--LGHLINL 592 (1209)
Q Consensus 518 ~~~~r~l~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~--i~~l~~L 592 (1209)
.+++|.+++.++.....+ ....|++++.|+++.|-.........+...+++|+.|+++.|.+...-++ -..+.+|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 345677777777665554 23478999999998874222233344568899999999999887643222 2367889
Q ss_pred cEEeccCcccCCc---ccccCCCCCCEEEccCC-CCCccchhccCCCCCCEEeccCCCCCcccC-chhhcCCCCCcEEEC
Q 038494 593 QTLCLDWCQLEDV---AAIGQLKKLEILSFRYS-DIKQLPLEIGQLAQLQLLDLSNCSSLVVIA-PNVISKFSRLEELYM 667 (1209)
Q Consensus 593 ~~L~l~~~~l~~l---~~i~~L~~L~~L~l~~~-~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~-~~~l~~L~~L~~L~l 667 (1209)
+.|.++.|.++.- ...-.++.|..|++.+| .+..--.....++.|+.|++++++ +..++ ....+.++.|+.|++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhc
Confidence 9999999987643 55567788999999888 333222234457788999999844 44443 223678888888888
Q ss_pred CCCCCccccccCCCccchhhhCCCCCCCEEEeeccCCCCCCc
Q 038494 668 GDSFPQWDKVEGGSNASLAELKGLSKLTTLEIQVQDAQMLPQ 709 (1209)
Q Consensus 668 ~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~ 709 (1209)
+.+.+... ..............++|+.|.+..+.+..++.
T Consensus 279 s~tgi~si--~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 279 SSTGIASI--AEPDVESLDKTHTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred cccCcchh--cCCCccchhhhcccccceeeecccCccccccc
Confidence 77654211 11122223345667788888888877755543
No 77
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.21 E-value=7.7e-06 Score=80.89 Aligned_cols=59 Identities=20% Similarity=0.205 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc
Q 038494 162 DSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP 222 (1209)
Q Consensus 162 ~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~ 222 (1209)
+||+..+..+...+.....+.+.|+|.+|+|||++++.+++..... -..++++......
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~ 59 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLL 59 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhh
Confidence 3788899999998877667789999999999999999999987532 2356777765543
No 78
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.21 E-value=1.9e-05 Score=81.25 Aligned_cols=155 Identities=21% Similarity=0.267 Sum_probs=95.0
Q ss_pred HHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcc--------------------cCCEEEEEEcC-CCcCHHHH
Q 038494 170 DVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDK--------------------VFDKVVMAEVT-ENPDVQKI 227 (1209)
Q Consensus 170 ~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~s-~~~~~~~l 227 (1209)
.+.+.+..++. ..+.++|+.|+|||++|+.+++...... +.+. .++... ....
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~---- 77 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIK---- 77 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCC----
Confidence 45555555555 5788999999999999999998875431 1121 222111 1111
Q ss_pred HHHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEE
Q 038494 228 QDKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIIL 301 (1209)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilv 301 (1209)
.+.++.+.+.+. .+.+-++|+||++... .++.+...+.... ..+.+|+
T Consensus 78 ------------------~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~--------~~~~~il 131 (188)
T TIGR00678 78 ------------------VDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPP--------PNTLFIL 131 (188)
T ss_pred ------------------HHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCC--------CCeEEEE
Confidence 233333333332 2456789999998763 3444433332222 4556666
Q ss_pred eccch-hhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChh
Q 038494 302 TSRSK-HLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPV 362 (1209)
Q Consensus 302 TtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL 362 (1209)
+|++. .+..........+++.+++.++..+.+.+. + . .++.+..|++.++|.|.
T Consensus 132 ~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g--i----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 132 ITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G--I----SEEAAELLLALAGGSPG 186 (188)
T ss_pred EECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C--C----CHHHHHHHHHHcCCCcc
Confidence 66543 222222234578999999999999998886 2 1 24678899999999885
No 79
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=0.00011 Score=87.07 Aligned_cols=200 Identities=16% Similarity=0.195 Sum_probs=113.9
Q ss_pred ccccchhhHHHHHHHHHHHHhCCC-ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHH
Q 038494 156 KDFEAFDSRMKLFQDVVEALRNDK-LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASD 234 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~ 234 (1209)
....+++|.+..++.|..++..+. ...+.++|+.|+||||+|+.+++.......... ..+..-...+.|...
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g 85 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQG 85 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcC
Confidence 336678999888888888887665 467789999999999999999988753211110 001111111111111
Q ss_pred hCCCC---C-CCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEecc
Q 038494 235 LDLNF---D-LNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSR 304 (1209)
Q Consensus 235 l~~~~---~-~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 304 (1209)
...+. + ......+.++.+.+.+. .+++-+||+|+++... .++.+...+.... ....+|++|.
T Consensus 86 ~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~--------~~~ifILaTt 157 (624)
T PRK14959 86 MHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPP--------ARVTFVLATT 157 (624)
T ss_pred CCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccC--------CCEEEEEecC
Confidence 00000 0 00001223333333322 2466799999998762 3344433332211 3445555554
Q ss_pred c-hhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCCh-hHHHHHHHHH
Q 038494 305 S-KHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLP-VALSTVANAL 371 (1209)
Q Consensus 305 ~-~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~~~~l 371 (1209)
. ..+..........+++.+++.++....+...+.... ..-..+.+..|++.++|.+ .|+..+...+
T Consensus 158 ~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg-i~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 158 EPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG-VDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred ChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4 333322233456889999999999999888664222 1123567788999999854 6776665444
No 80
>PTZ00202 tuzin; Provisional
Probab=98.19 E-value=1.7e-05 Score=87.28 Aligned_cols=164 Identities=14% Similarity=0.175 Sum_probs=102.3
Q ss_pred cccccchhhHHHHHHHHHHHHhC---CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHH
Q 038494 155 AKDFEAFDSRMKLFQDVVEALRN---DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKL 231 (1209)
Q Consensus 155 ~~~~~~~~gR~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i 231 (1209)
|.+...|+||+.++..+...|.+ +..+++.|+|++|+|||||++.+..... + ..++++.. +..++++.+
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~L 329 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRSV 329 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHHH
Confidence 34467899999999999999863 2235889999999999999999986543 1 13333333 679999999
Q ss_pred HHHhCCCCCCCCChHHHHHHHHHHHh----c-CCeEEEEEe--CCCccc-CccccCCCCCCCCccccccccCCcEEEEec
Q 038494 232 ASDLDLNFDLNDSKPHRAKQLCQRLT----K-EKRVLIILD--NIWKKL-GLEEIGIPFGDVDEKDRKQDLRRRTIILTS 303 (1209)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l~----~-~k~~LlvlD--dv~~~~-~~~~l~~~~~~~~~~~~~~~~~~s~ilvTt 303 (1209)
+++||.+.... ..+..+.+.+.+. . +++.+||+- +-.+.. ...+. ..+.... +-|.|++--
T Consensus 330 L~ALGV~p~~~--k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~dr--------r~ch~v~ev 398 (550)
T PTZ00202 330 VKALGVPNVEA--CGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDR--------RLCHVVIEV 398 (550)
T ss_pred HHHcCCCCccc--HHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccc--------hhheeeeee
Confidence 99999743222 1334444444433 3 566666652 111111 01110 0111111 456677655
Q ss_pred cchhh--hcccCCcceEEEcCCCCHHHHHHHHHHHh
Q 038494 304 RSKHL--LTNDMNSQKIFLIEVLSKEEALQFFEKIV 337 (1209)
Q Consensus 304 R~~~v--~~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 337 (1209)
--+.. +......-..|-+++++.++|.++-.+..
T Consensus 399 pleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 399 PLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 44432 22233455789999999999999887654
No 81
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=3.1e-05 Score=87.98 Aligned_cols=188 Identities=9% Similarity=0.058 Sum_probs=108.5
Q ss_pred ccchhhHHHHHHHHHHHHhCCC----------ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHH
Q 038494 158 FEAFDSRMKLFQDVVEALRNDK----------LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKI 227 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~~~----------~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l 227 (1209)
...++|.+..++.|..++..+. ...+.++|++|+|||++|+.+++.......- +.++... ..
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~~~Cg~C----~~ 75 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----EPGCGEC----RA 75 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----CCCCCCC----HH
Confidence 4568899999999999988643 4568899999999999999998876432110 0000000 00
Q ss_pred HHHHHHHhCCC-----CCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCC
Q 038494 228 QDKLASDLDLN-----FDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRR 296 (1209)
Q Consensus 228 ~~~i~~~l~~~-----~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~ 296 (1209)
-+.+...-..+ ........+.++.+.+... .+++-++|+|+++... ....+...+-... .+
T Consensus 76 C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~--------~~ 147 (394)
T PRK07940 76 CRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP--------PR 147 (394)
T ss_pred HHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC--------CC
Confidence 00010000000 0000111334444444443 2455688899998763 2233322222211 45
Q ss_pred cEEEEeccch-hhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 297 RTIILTSRSK-HLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 297 s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
..+|++|.+. .+..........+.+.+++.++..+.+.+..+ -..+.+..+++.++|.|.....+
T Consensus 148 ~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~------~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 148 TVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG------VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 5566655553 44433334567999999999999988875432 11456778999999999755433
No 82
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.19 E-value=2.9e-06 Score=89.85 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=64.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCC--cCHHHHHHHHHHHhCCCCCCCCCh-----HHHH-H
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTEN--PDVQKIQDKLASDLDLNFDLNDSK-----PHRA-K 250 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~--~~~~~l~~~i~~~l~~~~~~~~~~-----~~~~-~ 250 (1209)
....+.|+|++|+|||||++.+++....+ +|+.+.|+.+..+ .++.++++.+...+-....+.+.. ...+ .
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999999998765 8999999997766 789999999833321111111110 1111 1
Q ss_pred HHHHHHhcCCeEEEEEeCCCcc
Q 038494 251 QLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 251 ~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
........+++.++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 2222223579999999999765
No 83
>PRK04195 replication factor C large subunit; Provisional
Probab=98.18 E-value=2.3e-05 Score=93.15 Aligned_cols=186 Identities=18% Similarity=0.192 Sum_probs=112.9
Q ss_pred cccccchhhHHHHHHHHHHHHhC----CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHH
Q 038494 155 AKDFEAFDSRMKLFQDVVEALRN----DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDK 230 (1209)
Q Consensus 155 ~~~~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~ 230 (1209)
|.....++|+++.++.+.+|+.. ...+.+.|+|++|+||||+|+.++++.. |+. +-++.++..+.. ....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~~-ielnasd~r~~~-~i~~ 83 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WEV-IELNASDQRTAD-VIER 83 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCE-EEEcccccccHH-HHHH
Confidence 33466899999999999999873 1257899999999999999999998864 332 333444433222 2222
Q ss_pred HHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC------ccccCCCCCCCCccccccccCCcEEEEecc
Q 038494 231 LASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLG------LEEIGIPFGDVDEKDRKQDLRRRTIILTSR 304 (1209)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~------~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 304 (1209)
++....... .+.+.++-+||+|+++.... +..+...+.. .+..||+|+.
T Consensus 84 ~i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~----------~~~~iIli~n 138 (482)
T PRK04195 84 VAGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK----------AKQPIILTAN 138 (482)
T ss_pred HHHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc----------CCCCEEEecc
Confidence 322211100 01112568999999987532 2222221111 3445666664
Q ss_pred chh-hhc-ccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHh
Q 038494 305 SKH-LLT-NDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVANALK 372 (1209)
Q Consensus 305 ~~~-v~~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~ 372 (1209)
... ... ........+.+.+++.++....+.+.+...... -..+....|++.++|-.-.+......+.
T Consensus 139 ~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~-i~~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 139 DPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE-CDDEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred CccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 432 111 112345689999999999999988877532221 2256788999999997665554444443
No 84
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=2.5e-05 Score=90.36 Aligned_cols=177 Identities=15% Similarity=0.170 Sum_probs=112.4
Q ss_pred cccchhhHHHHHHHHHHHHhCCCce-EEEEEcCCCChHHHHHHHHHHHHhhcc-------------------cCCEEEEE
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLN-IIGVHGMGGVGKTTLVKQIAKQVMEDK-------------------VFDKVVMA 216 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~~wv 216 (1209)
...+++|.+..++.|..++..+..+ .+.++|+.|+||||+|+.+++...... .+..++.+
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 3668899999999898888876654 788999999999999999987643211 11223344
Q ss_pred EcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCcccc
Q 038494 217 EVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDR 290 (1209)
Q Consensus 217 ~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~ 290 (1209)
+.+....+.+ ++.+.+... .+++-++|+|+++... ..+.+...+-...
T Consensus 91 daas~~~vdd----------------------IR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp---- 144 (491)
T PRK14964 91 DAASNTSVDD----------------------IKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPA---- 144 (491)
T ss_pred ecccCCCHHH----------------------HHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCC----
Confidence 4433333332 333333221 2456689999998663 3444433332222
Q ss_pred ccccCCcEEEEeccc-hhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHH
Q 038494 291 KQDLRRRTIILTSRS-KHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVAL 364 (1209)
Q Consensus 291 ~~~~~~s~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 364 (1209)
+..++|++|.. ..+..........+++.+++.++..+.+.+.+..... .-.++.+..|++.++|.+-.+
T Consensus 145 ----~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi-~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 145 ----PHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI-EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred ----CCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 45666665543 3443333455678999999999999999887753322 223456778999999877543
No 85
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.17 E-value=2.1e-06 Score=88.58 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=34.9
Q ss_pred chhhHHHHHHHHHHHHh---CCCceEEEEEcCCCChHHHHHHHHHHHHhhc
Q 038494 160 AFDSRMKLFQDVVEALR---NDKLNIIGVHGMGGVGKTTLVKQIAKQVMED 207 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~ 207 (1209)
.|+||+++++++.+.+. ....+.+.|+|.+|+|||+|.++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38999999999999993 4456899999999999999999999988865
No 86
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.17 E-value=3.3e-05 Score=88.97 Aligned_cols=182 Identities=14% Similarity=0.222 Sum_probs=112.0
Q ss_pred ccccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcc--------------------cCCEEE
Q 038494 156 KDFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDK--------------------VFDKVV 214 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~--------------------~f~~~~ 214 (1209)
.....++|.+..++.+.+++..+.. ..+.++|++|+||||+|+.++....... +++. .
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-I 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-E
Confidence 3466789999999999999986654 4678999999999999999998864321 2222 2
Q ss_pred EEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCccccCCCCCCCCcc
Q 038494 215 MAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKK--LGLEEIGIPFGDVDEK 288 (1209)
Q Consensus 215 wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~~ 288 (1209)
++....... ...++.+.+.+. .+++-++|+|+++.. ...+.+...+....
T Consensus 90 ~~~~~~~~~----------------------~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~-- 145 (355)
T TIGR02397 90 EIDAASNNG----------------------VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPP-- 145 (355)
T ss_pred EeeccccCC----------------------HHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCc--
Confidence 222221111 122223333222 134568999998765 23333333332211
Q ss_pred ccccccCCcEEEEeccchh-hhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 289 DRKQDLRRRTIILTSRSKH-LLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 289 ~~~~~~~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
..+.+|++|.+.. +..........+++.+++.++..+.+...+..... .-.++.+..+++.++|.|..+...
T Consensus 146 ------~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 146 ------EHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred ------cceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCChHHHHHH
Confidence 4556666665443 22222234568899999999999999887653221 122467888999999988766554
Q ss_pred HH
Q 038494 368 AN 369 (1209)
Q Consensus 368 ~~ 369 (1209)
..
T Consensus 219 le 220 (355)
T TIGR02397 219 LD 220 (355)
T ss_pred HH
Confidence 43
No 87
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.17 E-value=3.2e-05 Score=93.82 Aligned_cols=203 Identities=15% Similarity=0.089 Sum_probs=116.8
Q ss_pred ccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccC---CEEEEEEcCCC---cCHHHHHHH-
Q 038494 158 FEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVF---DKVVMAEVTEN---PDVQKIQDK- 230 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f---~~~~wv~~s~~---~~~~~l~~~- 230 (1209)
.+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...+...
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 55788999999998888876666789999999999999999998877543322 12334444321 122222111
Q ss_pred --------------HHHHhCCCC----------------CC-CCChHHHHHHHHHHHhcCCeEEEEEeCCCcc--cCccc
Q 038494 231 --------------LASDLDLNF----------------DL-NDSKPHRAKQLCQRLTKEKRVLIILDNIWKK--LGLEE 277 (1209)
Q Consensus 231 --------------i~~~l~~~~----------------~~-~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~ 277 (1209)
.+...+... ++ ..-.......+.+.+. ++++.++-|+.|.. ..|+.
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCcccchh
Confidence 111111110 00 0111344566677775 57788887766654 35776
Q ss_pred cCCCCCCCCccccccccCCcEEEE--eccchhhhcc-cCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHH
Q 038494 278 IGIPFGDVDEKDRKQDLRRRTIIL--TSRSKHLLTN-DMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIV 354 (1209)
Q Consensus 278 l~~~~~~~~~~~~~~~~~~s~ilv--TtR~~~v~~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~ 354 (1209)
+...+..+. +...+++ ||++...... .......+.+.+++.+|.+.++.+.+...... -..++.+.|.
T Consensus 312 ik~~~~~~~--------~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~-ls~eal~~L~ 382 (615)
T TIGR02903 312 IKKLFEEGA--------PADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH-LAAGVEELIA 382 (615)
T ss_pred hhhhcccCc--------cceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHH
Confidence 655554433 4444555 5665432211 11234578899999999999999987532111 1134455555
Q ss_pred HHhCCChhHHHHHHHH
Q 038494 355 GKCGGLPVALSTVANA 370 (1209)
Q Consensus 355 ~~~~glPLai~~~~~~ 370 (1209)
+....-+-|+..++..
T Consensus 383 ~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 383 RYTIEGRKAVNILADV 398 (615)
T ss_pred HCCCcHHHHHHHHHHH
Confidence 5554445666555433
No 88
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=1.8e-05 Score=91.36 Aligned_cols=201 Identities=16% Similarity=0.173 Sum_probs=115.4
Q ss_pred cccchhhHHHHHHHHHHHHhCCCce-EEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEE-cCCCcCHHHHHHHHHHH
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLN-IIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAE-VTENPDVQKIQDKLASD 234 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~-~s~~~~~~~l~~~i~~~ 234 (1209)
....++|.+..++.|..++.++..+ .+.++|+.|+||||+|+.+++.......++...|.. .......-..-+.+...
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 3668899999999999999876664 488999999999999999998885432121111111 00111111111111111
Q ss_pred hCCCC----CCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEec-
Q 038494 235 LDLNF----DLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTS- 303 (1209)
Q Consensus 235 l~~~~----~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTt- 303 (1209)
...+. .......+.++.+.+.+. .+++-++|+|+++... .++.+...+.... +.+.+|++|
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~--------~~t~~Il~t~ 165 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPP--------PHAIFIFATT 165 (397)
T ss_pred CCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCC--------CCeEEEEEeC
Confidence 11100 001111344445555553 2356689999998663 4544433332222 455555555
Q ss_pred cchhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHH
Q 038494 304 RSKHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALST 366 (1209)
Q Consensus 304 R~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 366 (1209)
+...+..........+++.+++.++....+...+.... ..-..+.+..|++.++|.+--+..
T Consensus 166 ~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 166 ELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG-ISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred ChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 43333322223346789999999999888888764221 222356788999999997754433
No 89
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=2.7e-05 Score=92.78 Aligned_cols=196 Identities=13% Similarity=0.160 Sum_probs=114.0
Q ss_pred cccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcccC--CEEEEEEcCCCcCHHHHHHHHHH
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDKVF--DKVVMAEVTENPDVQKIQDKLAS 233 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~s~~~~~~~l~~~i~~ 233 (1209)
...+++|.+..++.|..++..+.. ..+.++|..|+||||+|+.+++........ ++..+- .......-+.|..
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~----pCg~C~~C~~i~~ 89 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT----PCGVCQACRDIDS 89 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC----CCCccHHHHHHHc
Confidence 366889999999999999887665 456899999999999999998876532111 111010 1111111111111
Q ss_pred HhC-----CCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEe
Q 038494 234 DLD-----LNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILT 302 (1209)
Q Consensus 234 ~l~-----~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvT 302 (1209)
.-. .+.. .....+.++.+.+... .++.-++|+|+|+... .++.+...+-... ...++|++
T Consensus 90 g~h~D~~eldaa-s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP--------~~~~fIL~ 160 (618)
T PRK14951 90 GRFVDYTELDAA-SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPP--------EYLKFVLA 160 (618)
T ss_pred CCCCceeecCcc-cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCC--------CCeEEEEE
Confidence 000 0000 0111334444444432 2455689999999763 3444443332222 45556655
Q ss_pred ccc-hhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHH
Q 038494 303 SRS-KHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALST 366 (1209)
Q Consensus 303 tR~-~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 366 (1209)
|.+ ..+..........+++.+++.++..+.+.+.+..... .-..+....|++.++|.+--+..
T Consensus 161 Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi-~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV-PAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred ECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 543 3333333355678999999999999999887753222 22245677889999887654433
No 90
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.14 E-value=6.4e-05 Score=86.17 Aligned_cols=176 Identities=15% Similarity=0.189 Sum_probs=103.0
Q ss_pred cccchhhHHHHHHHHHHHHhC-------------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcC
Q 038494 157 DFEAFDSRMKLFQDVVEALRN-------------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPD 223 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~ 223 (1209)
...++.|+++.++++.+.+.. ...+-+.++|++|+|||++|+.+++..... | +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~--~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--F-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC--E-----Eecch---
Confidence 456788999999999987741 123568999999999999999999876532 3 22221
Q ss_pred HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC----------------ccccCCCCCCCCc
Q 038494 224 VQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLG----------------LEEIGIPFGDVDE 287 (1209)
Q Consensus 224 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~----------------~~~l~~~~~~~~~ 287 (1209)
..+.... ++ ........+.+......+.+|++||++.... +..+...+..
T Consensus 190 -~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~--- 255 (364)
T TIGR01242 190 -SELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG--- 255 (364)
T ss_pred -HHHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC---
Confidence 1111111 11 0122334444444445678999999986421 0001000000
Q ss_pred cccccccCCcEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCCh
Q 038494 288 KDRKQDLRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLP 361 (1209)
Q Consensus 288 ~~~~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 361 (1209)
.....+.+||.||.......... .....+.++..+.++..++|..+.......++ .....+++.+.|..
T Consensus 256 ---~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~--~~~~~la~~t~g~s 328 (364)
T TIGR01242 256 ---FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED--VDLEAIAKMTEGAS 328 (364)
T ss_pred ---CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc--CCHHHHHHHcCCCC
Confidence 00114667888887653322111 22457899999999999999988753322221 11357777887764
No 91
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=0.00021 Score=78.74 Aligned_cols=208 Identities=15% Similarity=0.142 Sum_probs=130.2
Q ss_pred ccchhhHHHHHHHHHHHHh----CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHH
Q 038494 158 FEAFDSRMKLFQDVVEALR----NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLAS 233 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~ 233 (1209)
+...+||+.+++.+.+|+. ......+-|.|-+|.|||.+...++.+......=-.++++++..-.....++..|..
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHH
Confidence 5578899999999999986 345678999999999999999999988865322225577777665677788888887
Q ss_pred HhCCCCCCCCChHHHHHHHHHHHhcCC-eEEEEEeCCCcccC--ccccCCCCCCCCccccccccCCcEEEEec-------
Q 038494 234 DLDLNFDLNDSKPHRAKQLCQRLTKEK-RVLIILDNIWKKLG--LEEIGIPFGDVDEKDRKQDLRRRTIILTS------- 303 (1209)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~~~k-~~LlvlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~~~s~ilvTt------- 303 (1209)
.+-...............+.++..+.+ .+|+|+|.++.... -..+...|-+.. .+++++|+.-
T Consensus 229 ~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~-------lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 229 SLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK-------LPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhccc-------CCcceeeeeeehhhhhH
Confidence 772222222221334455666666544 79999999986521 111111111100 1455544421
Q ss_pred --cchhhhcc-cCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHh
Q 038494 304 --RSKHLLTN-DMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVANALK 372 (1209)
Q Consensus 304 --R~~~v~~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~ 372 (1209)
|--.-... ..-....+..+|.+.++-.++|..+.............++-+++|+.|.---++.+-.+.+
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 11111110 1234568889999999999999999875554555555666677777665554544444444
No 92
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.13 E-value=3.9e-05 Score=81.71 Aligned_cols=175 Identities=14% Similarity=0.108 Sum_probs=103.4
Q ss_pred cchh-h-HHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhC
Q 038494 159 EAFD-S-RMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLD 236 (1209)
Q Consensus 159 ~~~~-g-R~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 236 (1209)
++|+ | -...+..+.++......+.+.|+|++|+|||+|++.+++..... -..+.++++.....
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~------------- 86 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW------------- 86 (235)
T ss_pred cccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh-------------
Confidence 3454 4 23345555555555555789999999999999999999887643 34566776643100
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc---Ccccc-CCCCCCCCccccccccCC-cEEEEeccchhhhc-
Q 038494 237 LNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL---GLEEI-GIPFGDVDEKDRKQDLRR-RTIILTSRSKHLLT- 310 (1209)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~---~~~~l-~~~~~~~~~~~~~~~~~~-s~ilvTtR~~~v~~- 310 (1209)
....+.+.+. +--+|++||+.... .|+.. ...+.... ..| .++|+||+.....-
T Consensus 87 -----------~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~-------e~g~~~li~ts~~~p~~l~ 146 (235)
T PRK08084 87 -----------FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRIL-------ESGRTRLLITGDRPPRQLN 146 (235)
T ss_pred -----------hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHH-------HcCCCeEEEeCCCChHHcC
Confidence 0111222232 12478999997652 33321 11111100 023 47999998653221
Q ss_pred -------ccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 038494 311 -------NDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVAN 369 (1209)
Q Consensus 311 -------~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 369 (1209)
..+....+++++++++++-.+++.+++.... -.--+++..-|++.+.|..-++..+-.
T Consensus 147 ~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 147 LGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred cccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 0123446899999999999999988664321 222357788888888877655554433
No 93
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=0.00026 Score=87.82 Aligned_cols=179 Identities=13% Similarity=0.173 Sum_probs=111.8
Q ss_pred cccchhhHHHHHHHHHHHHhCCCce-EEEEEcCCCChHHHHHHHHHHHHhhcccCC---------------------EEE
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLN-IIGVHGMGGVGKTTLVKQIAKQVMEDKVFD---------------------KVV 214 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~---------------------~~~ 214 (1209)
...+++|.+..++.|..++..++.. .+.++|..|+||||+|+.+++.......+. .++
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ 92 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVT 92 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEE
Confidence 3668999999999999999876654 578999999999999999998875321110 112
Q ss_pred EEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCcc
Q 038494 215 MAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEK 288 (1209)
Q Consensus 215 wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~ 288 (1209)
+++...... .+.++.+.+.+. .++.-++|+|+++... .++.|...+..-.
T Consensus 93 eidaas~~~----------------------Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP-- 148 (824)
T PRK07764 93 EIDAASHGG----------------------VDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP-- 148 (824)
T ss_pred EecccccCC----------------------HHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC--
Confidence 222111111 233334433322 2455689999998763 3444433333222
Q ss_pred ccccccCCcEEEEeccc-hhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHH
Q 038494 289 DRKQDLRRRTIILTSRS-KHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALST 366 (1209)
Q Consensus 289 ~~~~~~~~s~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 366 (1209)
..+.+|++|.+ ..+..........|++..++.++..+.+.+.+.... ..-..+....|++.++|.+..+..
T Consensus 149 ------~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG-v~id~eal~lLa~~sgGdlR~Al~ 220 (824)
T PRK07764 149 ------EHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG-VPVEPGVLPLVIRAGGGSVRDSLS 220 (824)
T ss_pred ------CCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 45556655543 334333335567899999999999988888764222 112345667899999998754433
No 94
>PRK08727 hypothetical protein; Validated
Probab=98.13 E-value=2.6e-05 Score=82.85 Aligned_cols=171 Identities=13% Similarity=0.092 Sum_probs=100.0
Q ss_pred ccchhhHHH-HHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhC
Q 038494 158 FEAFDSRMK-LFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLD 236 (1209)
Q Consensus 158 ~~~~~gR~~-~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 236 (1209)
.+.|++... .+..+...........+.|+|.+|+|||+|++.+++....+ ...+.|+++.+ ...
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~------- 82 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAG------- 82 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhh-------
Confidence 445654332 33333333333334579999999999999999999887654 23556676432 111
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC---ccc-cCCCCCCCCccccccccCCcEEEEeccchhhhc--
Q 038494 237 LNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLG---LEE-IGIPFGDVDEKDRKQDLRRRTIILTSRSKHLLT-- 310 (1209)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~---~~~-l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~-- 310 (1209)
......+.+. +.-+||+||++.... |.. +...+... -.+|..+|+|++...-.-
T Consensus 83 -----------~~~~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~-------~~~~~~vI~ts~~~p~~l~~ 142 (233)
T PRK08727 83 -----------RLRDALEALE--GRSLVALDGLESIAGQREDEVALFDFHNRA-------RAAGITLLYTARQMPDGLAL 142 (233)
T ss_pred -----------hHHHHHHHHh--cCCEEEEeCcccccCChHHHHHHHHHHHHH-------HHcCCeEEEECCCChhhhhh
Confidence 1112233343 346999999986532 221 11111100 014667999998642210
Q ss_pred ------ccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHH
Q 038494 311 ------NDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVAL 364 (1209)
Q Consensus 311 ------~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 364 (1209)
..+.....+++++++.++-.+++.+++.... -.-.++....|++.++|-.-.+
T Consensus 143 ~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~-l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 143 VLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG-LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred hhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhCCCCHHHH
Confidence 0112346899999999999999998765321 2223567778888887655444
No 95
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=0.00043 Score=82.47 Aligned_cols=196 Identities=14% Similarity=0.175 Sum_probs=112.3
Q ss_pred cccchhhHHHHHHHHHHHHhCCCce-EEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHh
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLN-IIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDL 235 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l 235 (1209)
...+++|.+..++.|..++..+... .+.++|+.|+||||+|+.+++........+ +..+.. -...+.|...-
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~----C~~C~~i~~~~ 83 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGV----CESCVALAPNG 83 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCcccc----cHHHHHhhccc
Confidence 3668999999999999999876655 468999999999999999998765321111 001110 01111111100
Q ss_pred -------CCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEe
Q 038494 236 -------DLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILT 302 (1209)
Q Consensus 236 -------~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvT 302 (1209)
..+.. .....+.++.+.+... .+++-++|+|+++... ..+.+...+-... ....+|++
T Consensus 84 ~~~~dvieidaa-s~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp--------~~~~fIL~ 154 (584)
T PRK14952 84 PGSIDVVELDAA-SHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPP--------EHLIFIFA 154 (584)
T ss_pred CCCceEEEeccc-cccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCC--------CCeEEEEE
Confidence 00000 0011333444443332 2455689999998652 3444433322221 35555554
Q ss_pred c-cchhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChh-HHHHHHH
Q 038494 303 S-RSKHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPV-ALSTVAN 369 (1209)
Q Consensus 303 t-R~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~~~ 369 (1209)
| ....+..........+++.+++.++..+.+.+.+..... .-..+.+..|++..+|-+- |+..+-.
T Consensus 155 tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi-~i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 155 TTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV-VVDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred eCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4 444433322345678999999999999888877653221 2224566788999999774 4444433
No 96
>PRK09087 hypothetical protein; Validated
Probab=98.10 E-value=6e-05 Score=79.29 Aligned_cols=146 Identities=12% Similarity=0.067 Sum_probs=88.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhc
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTK 258 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (1209)
..+.+.|+|.+|+|||+|++.+++.... .+++.. .+.. .....+.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~---------------------~~~~~~~~ 88 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGS---------------------DAANAAAE 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------Hcch---------------------HHHHhhhc
Confidence 3467999999999999999988876432 133321 0111 11112211
Q ss_pred CCeEEEEEeCCCcccC-ccccCCCCCCCCccccccccCCcEEEEeccchhhh--------cccCCcceEEEcCCCCHHHH
Q 038494 259 EKRVLIILDNIWKKLG-LEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLL--------TNDMNSQKIFLIEVLSKEEA 329 (1209)
Q Consensus 259 ~k~~LlvlDdv~~~~~-~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~~e~ 329 (1209)
-+|++||++.... -+.+...+... ...|..+|+|++..... ...+....++++++++.++-
T Consensus 89 ---~~l~iDDi~~~~~~~~~lf~l~n~~-------~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~ 158 (226)
T PRK09087 89 ---GPVLIEDIDAGGFDETGLFHLINSV-------RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALL 158 (226)
T ss_pred ---CeEEEECCCCCCCCHHHHHHHHHHH-------HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHH
Confidence 3788899975421 11111111100 11467799988753211 01124457899999999999
Q ss_pred HHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 038494 330 LQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVAN 369 (1209)
Q Consensus 330 ~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 369 (1209)
.+++.+.+.... -.--+++..-|++.+.|..-++..+-.
T Consensus 159 ~~iL~~~~~~~~-~~l~~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 159 SQVIFKLFADRQ-LYVDPHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999886321 222367888899999888777765433
No 97
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.09 E-value=3.2e-06 Score=98.99 Aligned_cols=77 Identities=40% Similarity=0.519 Sum_probs=39.3
Q ss_pred CCcEEEecCcccccccccccCCCCCcEEeccCcccCCc-ccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccC
Q 038494 568 DLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDV-AAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSN 644 (1209)
Q Consensus 568 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~ 644 (1209)
+|+.|+++++.+..+|..++.+++|+.|++++|.+.++ ...+.+..|+.|++++|.+..+|..++.+.+|++|.+++
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcC
Confidence 45555555555555544455555555555555555554 333355555555555555555555444444455555554
No 98
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=3.2e-05 Score=91.23 Aligned_cols=179 Identities=15% Similarity=0.188 Sum_probs=111.3
Q ss_pred cccchhhHHHHHHHHHHHHhCCCce-EEEEEcCCCChHHHHHHHHHHHHhhccc-------------------CCEEEEE
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLN-IIGVHGMGGVGKTTLVKQIAKQVMEDKV-------------------FDKVVMA 216 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~~~wv 216 (1209)
...+++|-+..++.|..++..+..+ .+.++|+.|+||||+|+.+++....... |..++.+
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 3668999999999999999876654 5689999999999999999987753221 1123333
Q ss_pred EcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCcccc
Q 038494 217 EVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDR 290 (1209)
Q Consensus 217 ~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~ 290 (1209)
+.+....+ +.++.+.+.+. .++.-++|+|+|+... ..+.+...+-...
T Consensus 94 daas~~~v----------------------~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp---- 147 (509)
T PRK14958 94 DAASRTKV----------------------EDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPP---- 147 (509)
T ss_pred cccccCCH----------------------HHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccC----
Confidence 33222222 22333333322 2466789999998762 3444433322221
Q ss_pred ccccCCcEEEEeccc-hhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHH
Q 038494 291 KQDLRRRTIILTSRS-KHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALST 366 (1209)
Q Consensus 291 ~~~~~~s~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 366 (1209)
...++|++|.+ ..+..........+++.+++.++....+.+.+...... -..+....|++.++|.+.-+..
T Consensus 148 ----~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~-~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 148 ----SHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE-FENAALDLLARAANGSVRDALS 219 (509)
T ss_pred ----CCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHH
Confidence 45666665544 33332223445678999999999888777766432222 2245667889999987754433
No 99
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=2.9e-05 Score=92.25 Aligned_cols=177 Identities=14% Similarity=0.201 Sum_probs=109.7
Q ss_pred cccchhhHHHHHHHHHHHHhCCCce-EEEEEcCCCChHHHHHHHHHHHHhhccc-------------------CCEEEEE
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLN-IIGVHGMGGVGKTTLVKQIAKQVMEDKV-------------------FDKVVMA 216 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~~~wv 216 (1209)
...+++|.+..++.+..++..++.. .+.++|+.|+||||+|+.+++....... |..++++
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 3667899999999999999876654 5689999999999999999988743211 1112222
Q ss_pred EcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCcccc
Q 038494 217 EVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDR 290 (1209)
Q Consensus 217 ~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~ 290 (1209)
..+.... .+.++.+..... .+++-++|+|+++... ..+.+...+-...
T Consensus 94 ~~~~~~~----------------------vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp---- 147 (527)
T PRK14969 94 DAASNTQ----------------------VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPP---- 147 (527)
T ss_pred eccccCC----------------------HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCC----
Confidence 2221111 233333433332 2466799999998663 2333333322211
Q ss_pred ccccCCcEEEEeccch-hhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHH
Q 038494 291 KQDLRRRTIILTSRSK-HLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVAL 364 (1209)
Q Consensus 291 ~~~~~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 364 (1209)
....+|++|.+. .+..........+++.+++.++..+.+.+.+.... ....++.++.|++.++|.+--+
T Consensus 148 ----~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-i~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 148 ----EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-IPFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred ----CCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 355566555443 33222223456899999999999988888764222 2223456678999999977533
No 100
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=5.5e-05 Score=90.55 Aligned_cols=200 Identities=9% Similarity=0.135 Sum_probs=116.7
Q ss_pred ccccchhhHHHHHHHHHHHHhCCCce-EEEEEcCCCChHHHHHHHHHHHHhhcccCC--EEEEEEcCCCcCHHHHHHHHH
Q 038494 156 KDFEAFDSRMKLFQDVVEALRNDKLN-IIGVHGMGGVGKTTLVKQIAKQVMEDKVFD--KVVMAEVTENPDVQKIQDKLA 232 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~wv~~s~~~~~~~l~~~i~ 232 (1209)
....+++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+++......... +..|-.+. ...--+.|.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg----~c~~C~~i~ 96 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG----VGEHCQAIM 96 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc----ccHHHHHHh
Confidence 34678999999999999999876644 688999999999999999998775321110 00011111 111112222
Q ss_pred HHhCCCCC----CCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEe
Q 038494 233 SDLDLNFD----LNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILT 302 (1209)
Q Consensus 233 ~~l~~~~~----~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvT 302 (1209)
..-..+.. ......+.++.+.+.+. .+++-++|+|+++... ..+.+...+-... .++.+|++
T Consensus 97 ~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp--------~~~~fIl~ 168 (598)
T PRK09111 97 EGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPP--------PHVKFIFA 168 (598)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCC--------CCeEEEEE
Confidence 21111100 00111344445544443 1345689999998663 3344433322221 45666555
Q ss_pred c-cchhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHH
Q 038494 303 S-RSKHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVA 368 (1209)
Q Consensus 303 t-R~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 368 (1209)
| ....+..........+++..++.++....+.+.+..... .-..+.+..|++.++|.+.-+....
T Consensus 169 tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi-~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 169 TTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV-EVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred eCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4 433343322345678999999999999999887652221 1224677889999999886554443
No 101
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.07 E-value=3.3e-06 Score=68.32 Aligned_cols=57 Identities=30% Similarity=0.314 Sum_probs=24.4
Q ss_pred CccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEeccCc
Q 038494 542 QLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWC 600 (1209)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~ 600 (1209)
+|++|++.+| .+..++...|.++++|++|++++|.++.+|. .|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n--~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN--KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS--TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC--CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444 2334444444444444444444444444332 3344444444444444
No 102
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.07 E-value=1.2e-05 Score=88.41 Aligned_cols=101 Identities=17% Similarity=0.213 Sum_probs=67.6
Q ss_pred HHHHHhC-CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc--CHHHHHHHHHHHhCCCCCCCCCh--
Q 038494 171 VVEALRN-DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP--DVQKIQDKLASDLDLNFDLNDSK-- 245 (1209)
Q Consensus 171 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~--~~~~l~~~i~~~l~~~~~~~~~~-- 245 (1209)
+++++.. +......|+|++|+||||||+.+|+....+ +|+.++||.+.+.. .+.++++.+...+-....+.+..
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~ 237 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERH 237 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHH
Confidence 4444432 344678899999999999999999999875 89999999999887 78888888763221111111110
Q ss_pred ---HHHHHHHHHHH-hcCCeEEEEEeCCCcc
Q 038494 246 ---PHRAKQLCQRL-TKEKRVLIILDNIWKK 272 (1209)
Q Consensus 246 ---~~~~~~l~~~l-~~~k~~LlvlDdv~~~ 272 (1209)
...+-...+++ ..+++++|++|++...
T Consensus 238 ~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 238 VQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 11111222222 2579999999999765
No 103
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.06 E-value=4.5e-06 Score=67.52 Aligned_cols=58 Identities=28% Similarity=0.417 Sum_probs=52.8
Q ss_pred CCCcEEEecCcccccccc-cccCCCCCcEEeccCcccCCc--ccccCCCCCCEEEccCCCC
Q 038494 567 EDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRYSDI 624 (1209)
Q Consensus 567 ~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~ 624 (1209)
++|++|++++|.++.+|. .+..+++|++|++++|.++.+ ..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 478999999999999985 789999999999999999988 6789999999999999864
No 104
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.04 E-value=5.3e-06 Score=97.12 Aligned_cols=174 Identities=26% Similarity=0.314 Sum_probs=140.6
Q ss_pred CCeEEEEccCCCCccCCCcCCCC--CccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEe
Q 038494 519 KGAIAISIPYGDIQELPERLECP--QLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLC 596 (1209)
Q Consensus 519 ~~~r~l~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~ 596 (1209)
..+..+.+.++.+..++...... +|+.|++.++ .+..++.. +..++.|+.|++++|.+.++|...+.+.+|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N--~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN--KIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccccccchhhccccccccc--chhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 56889999999999999877554 8999999998 45555433 4789999999999999999999888999999999
Q ss_pred ccCcccCCc-ccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccc
Q 038494 597 LDWCQLEDV-AAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWD 675 (1209)
Q Consensus 597 l~~~~l~~l-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~ 675 (1209)
+++|.+..+ ..+..+.+|++|.+++|.+...+..+.++.++..|.+.+ +.+...+ ..++.+.+|+.|+++++...
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~-~~~~~l~~l~~L~~s~n~i~-- 268 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLP-ESIGNLSNLETLDLSNNQIS-- 268 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeecc-chhccccccceecccccccc--
Confidence 999999999 445677889999999997778888899999999998766 5555433 34788999999999876421
Q ss_pred cccCCCccchhhhCCCCCCCEEEeeccCCCCC
Q 038494 676 KVEGGSNASLAELKGLSKLTTLEIQVQDAQML 707 (1209)
Q Consensus 676 ~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~ 707 (1209)
.+..+..+.+++.|+++.+.....
T Consensus 269 --------~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 269 --------SISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred --------ccccccccCccCEEeccCcccccc
Confidence 122377788999999987765443
No 105
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.0001 Score=88.40 Aligned_cols=198 Identities=17% Similarity=0.201 Sum_probs=112.8
Q ss_pred ccccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEE-cCCCcCHHHHHHHHHH
Q 038494 156 KDFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAE-VTENPDVQKIQDKLAS 233 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~-~s~~~~~~~l~~~i~~ 233 (1209)
.....++|.+..+..|..++..+.. ..+.++|+.|+||||+|+.+++........+.-.|.. .......-..-+.+..
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhc
Confidence 3367899999999999998887665 4588999999999999999998875432221111111 0011111111122211
Q ss_pred HhCCCC---CC-CCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEec
Q 038494 234 DLDLNF---DL-NDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTS 303 (1209)
Q Consensus 234 ~l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTt 303 (1209)
.-..+. +. .....+.++.+.+.+. .+.+-++|+|+++... ..+.+...+.... ..+.+|++|
T Consensus 93 g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp--------~~tv~IL~t 164 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPP--------PHAIFIFAT 164 (620)
T ss_pred cCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCC--------CCeEEEEEe
Confidence 111100 00 1111344555555542 2455689999988763 2334433322211 344555444
Q ss_pred -cchhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChh
Q 038494 304 -RSKHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPV 362 (1209)
Q Consensus 304 -R~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL 362 (1209)
+...+..........+++.+++.++....+.+.+.... ..-..+.++.|++.++|..-
T Consensus 165 ~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg-i~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 165 TELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG-IQIDADALQLIARKAQGSMR 223 (620)
T ss_pred CChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCHH
Confidence 43443332335567899999999998888887664221 11235677899999999554
No 106
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00015 Score=84.66 Aligned_cols=177 Identities=14% Similarity=0.174 Sum_probs=107.2
Q ss_pred ccccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcc---------------------cCCEE
Q 038494 156 KDFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDK---------------------VFDKV 213 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~---------------------~f~~~ 213 (1209)
....+++|.+..+..+.+++..+.. ..+.++|+.|+||||+|+.+++...... +++ .
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-V 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-e
Confidence 3466899999999999999987665 5678999999999999999998764321 111 1
Q ss_pred EEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCc
Q 038494 214 VMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDE 287 (1209)
Q Consensus 214 ~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~ 287 (1209)
+++....... .+.++.+.+.+. .+++-++|+|+++... ..+.+...+....
T Consensus 93 ~~i~g~~~~g----------------------id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~- 149 (451)
T PRK06305 93 LEIDGASHRG----------------------IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPP- 149 (451)
T ss_pred EEeeccccCC----------------------HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCC-
Confidence 1111111111 122222222221 2456789999987652 2333322222211
Q ss_pred cccccccCCcEEEEeccc-hhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHH
Q 038494 288 KDRKQDLRRRTIILTSRS-KHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVAL 364 (1209)
Q Consensus 288 ~~~~~~~~~s~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 364 (1209)
.+..+|++|.. ..+..........+++.++++++....+.+.+.... ..-..+.+..|++.++|.+--+
T Consensus 150 -------~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-~~i~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 150 -------QHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-IETSREALLPIARAAQGSLRDA 219 (451)
T ss_pred -------CCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 35556655533 333222234557899999999999988887664221 1223567889999999976433
No 107
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00011 Score=88.21 Aligned_cols=191 Identities=14% Similarity=0.184 Sum_probs=110.1
Q ss_pred cccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHH-HH
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLA-SD 234 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~-~~ 234 (1209)
....++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++..-.....+ .+-.+... .... ..
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~~pC~~C-------~~~~~~~ 86 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LLEPCQEC-------IENVNNS 86 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CCCchhHH-------HHhhcCC
Confidence 366889999999999999987654 4567999999999999999998764321100 00000000 0000 00
Q ss_pred ---hCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEE-Eecc
Q 038494 235 ---LDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTII-LTSR 304 (1209)
Q Consensus 235 ---l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~il-vTtR 304 (1209)
+.... ......+.++.+.+.+. .+++-++|+|+++... .+..+...+-... ....+| +|++
T Consensus 87 ~Dvieida-asn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP--------~~tifILaTte 157 (725)
T PRK07133 87 LDIIEMDA-ASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPP--------KHVIFILATTE 157 (725)
T ss_pred CcEEEEec-cccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCC--------CceEEEEEcCC
Confidence 00000 00011334455555443 2466799999998652 3444433222211 344444 4544
Q ss_pred chhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHH
Q 038494 305 SKHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALST 366 (1209)
Q Consensus 305 ~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 366 (1209)
...+..........+++.+++.++....+...+..... ....+.++.|++.++|-+--+..
T Consensus 158 ~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI-~id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 158 VHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI-SYEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred hhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 44443333345578999999999999888876542221 12245677899999987643333
No 108
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00015 Score=83.48 Aligned_cols=178 Identities=15% Similarity=0.227 Sum_probs=105.6
Q ss_pred cccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhc------ccCCE-EEEEEcCCCcCHHHHH
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMED------KVFDK-VVMAEVTENPDVQKIQ 228 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~------~~f~~-~~wv~~s~~~~~~~l~ 228 (1209)
...+++|.+..++.+.+++..+.. +.+.++|++|+||||+|+.+++..... ..|.. ++-+......+.
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 90 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV---- 90 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH----
Confidence 366789999999999999987654 478899999999999999998876431 11211 111111111111
Q ss_pred HHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEe
Q 038494 229 DKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILT 302 (1209)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvT 302 (1209)
+.+..+.+.+. .+++-++++|+++... .++.+...+.... ..+.+|++
T Consensus 91 ------------------~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~--------~~~~~Il~ 144 (367)
T PRK14970 91 ------------------DDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPP--------AHAIFILA 144 (367)
T ss_pred ------------------HHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCC--------CceEEEEE
Confidence 22222222211 1355689999997653 2444422221111 34455555
Q ss_pred cc-chhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHH
Q 038494 303 SR-SKHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALS 365 (1209)
Q Consensus 303 tR-~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 365 (1209)
|. ...+..........+++.++++++....+...+..... .-..+.++.|++.++|.+-.+.
T Consensus 145 ~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i~~~al~~l~~~~~gdlr~~~ 207 (367)
T PRK14970 145 TTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI-KFEDDALHIIAQKADGALRDAL 207 (367)
T ss_pred eCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHHH
Confidence 53 33332222234568999999999999888887652221 1224677889999998665443
No 109
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00014 Score=87.91 Aligned_cols=178 Identities=17% Similarity=0.221 Sum_probs=110.9
Q ss_pred cccchhhHHHHHHHHHHHHhCCCce-EEEEEcCCCChHHHHHHHHHHHHhhc---------------------ccCCEEE
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLN-IIGVHGMGGVGKTTLVKQIAKQVMED---------------------KVFDKVV 214 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~---------------------~~f~~~~ 214 (1209)
....++|.+..++.|..++..+... .+.++|+.|+||||+|+.++...... .+|+. .
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~ 93 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-H 93 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-E
Confidence 3668899999999999999876654 57899999999999999999876421 12321 2
Q ss_pred EEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCcc
Q 038494 215 MAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEK 288 (1209)
Q Consensus 215 wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~ 288 (1209)
.++.+....+ +.++.+...+. .+++-++|+|+++... .++.+...+....
T Consensus 94 ~ld~~~~~~v----------------------d~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp-- 149 (614)
T PRK14971 94 ELDAASNNSV----------------------DDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP-- 149 (614)
T ss_pred EecccccCCH----------------------HHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC--
Confidence 2222222222 22233332221 1355688999988763 3444433332221
Q ss_pred ccccccCCcEEEE-eccchhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHH
Q 038494 289 DRKQDLRRRTIIL-TSRSKHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALST 366 (1209)
Q Consensus 289 ~~~~~~~~s~ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 366 (1209)
.++.+|+ |++...+..........+++.+++.++....+.+.+.... ..-..+.+..|++.++|-.--+..
T Consensus 150 ------~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg-i~i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 150 ------SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG-ITAEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred ------CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 4455555 4444444433345567899999999999999887765322 122345678999999996654433
No 110
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=1.8e-06 Score=93.42 Aligned_cols=180 Identities=22% Similarity=0.217 Sum_probs=124.2
Q ss_pred hhcCCeEEEEccCCCCccCCCc----CCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccc--cccccccCC
Q 038494 516 IIQKGAIAISIPYGDIQELPER----LECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFS--SLSSSLGHL 589 (1209)
Q Consensus 516 ~~~~~~r~l~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~--~lp~~i~~l 589 (1209)
.+..++|.+.++.|-++++... ..+|+|+.|+++.|.. ...+....-..+++|+.|.|+.|.++ ++-.....+
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl-~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL-SNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc-cCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 4567889999998876655432 2689999999998742 11111112236789999999999887 444556678
Q ss_pred CCCcEEeccCcccCCc--ccccCCCCCCEEEccCCCCCccc--hhccCCCCCCEEeccCCCCCcccC-ch-----hhcCC
Q 038494 590 INLQTLCLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQLP--LEIGQLAQLQLLDLSNCSSLVVIA-PN-----VISKF 659 (1209)
Q Consensus 590 ~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp--~~i~~L~~L~~L~l~~~~~l~~~~-~~-----~l~~L 659 (1209)
++|..|+|.+|..... .+..-++.|+.|||++|++..++ ..++.++.|..|+++.| .+.++. +. ....+
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhccc
Confidence 8999999999963222 55667888999999999888776 45788999999999884 444332 11 13567
Q ss_pred CCCcEEECCCCCCccccccCCCccchhhhCCCCCCCEEEeeccCC
Q 038494 660 SRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTTLEIQVQDA 704 (1209)
Q Consensus 660 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~ 704 (1209)
++|+.|++..|.+ ..-..+.++..+.+|+.|.+.++..
T Consensus 301 ~kL~~L~i~~N~I-------~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 301 PKLEYLNISENNI-------RDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred ccceeeecccCcc-------ccccccchhhccchhhhhhcccccc
Confidence 8999999887643 1112244566667777777665544
No 111
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.001 Score=80.50 Aligned_cols=199 Identities=12% Similarity=0.149 Sum_probs=115.6
Q ss_pred ccccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHH
Q 038494 156 KDFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASD 234 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~ 234 (1209)
.....++|.+..+..|..++..++. ..+.++|..|+||||+|+.+++.......... . ..........+.+...
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-~----~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-T----PEPCGKCELCRAIAAG 87 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-C----CCCCcccHHHHHHhcC
Confidence 3356788999999999999886553 57789999999999999999998754211110 0 0111122233333322
Q ss_pred hCCCC----CCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEecc
Q 038494 235 LDLNF----DLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSR 304 (1209)
Q Consensus 235 l~~~~----~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 304 (1209)
...+. .......+.++.+.+... .+++-++|+|+++... .++.+...+-... ....+|++|.
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp--------~~tvfIL~t~ 159 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPP--------PRVVFVLATT 159 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCC--------cCeEEEEEeC
Confidence 21110 001112344555554443 2455689999998663 3444433332211 3444454444
Q ss_pred c-hhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHH
Q 038494 305 S-KHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVA 368 (1209)
Q Consensus 305 ~-~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 368 (1209)
+ ..+..........+++..++.++....+.+.+...... -..+.+..|++.++|.+..+..+.
T Consensus 160 ~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~-is~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 160 DPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE-IEPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 33332223455788899999999888887766432211 123567889999999876554443
No 112
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.95 E-value=4.4e-05 Score=79.43 Aligned_cols=186 Identities=17% Similarity=0.161 Sum_probs=118.8
Q ss_pred ccccccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEE-EEEEcCCCcCHHHHHHHH-
Q 038494 154 QAKDFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKV-VMAEVTENPDVQKIQDKL- 231 (1209)
Q Consensus 154 ~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~-~wv~~s~~~~~~~l~~~i- 231 (1209)
.|....+++|.+..++.+.+.+.....+....+|++|.|||+-|+.++...-..+.|.++ .=.++|+.....-+-..+
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik 110 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIK 110 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhc
Confidence 345577899999999999999988778899999999999999999999988766667644 445666554333111111
Q ss_pred --HHHhCCCCCCCCChHHHHHHHHHHHhcCCe-EEEEEeCCCcc--cCccccCCCCCCCCccccccccCCcEEEEeccch
Q 038494 232 --ASDLDLNFDLNDSKPHRAKQLCQRLTKEKR-VLIILDNIWKK--LGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSK 306 (1209)
Q Consensus 232 --~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~-~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~ 306 (1209)
.+........... .-++ -++|||+++.. +.|..+....-... ..++.|..+...
T Consensus 111 ~fakl~~~~~~~~~~-------------~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s--------~~trFiLIcnyl 169 (346)
T KOG0989|consen 111 NFAKLTVLLKRSDGY-------------PCPPFKIIILDECDSMTSDAQAALRRTMEDFS--------RTTRFILICNYL 169 (346)
T ss_pred CHHHHhhccccccCC-------------CCCcceEEEEechhhhhHHHHHHHHHHHhccc--------cceEEEEEcCCh
Confidence 0000000000000 0123 58899999987 57877755443322 455555544433
Q ss_pred -hhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCCh
Q 038494 307 -HLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLP 361 (1209)
Q Consensus 307 -~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 361 (1209)
.+.........-+..++|.+++...-++..+..+.-+ -..+..+.|++.++|--
T Consensus 170 srii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~-~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 170 SRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVD-IDDDALKLIAKISDGDL 224 (346)
T ss_pred hhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCcH
Confidence 2222223445678899999999999888887633322 23567779999998853
No 113
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.95 E-value=2.3e-05 Score=87.20 Aligned_cols=50 Identities=14% Similarity=0.349 Sum_probs=28.4
Q ss_pred ccccceEeeccccchhhhhccccccccccccccccchhhhhccCCcccccccccccccCCCcceEeec
Q 038494 918 PSSLVNLKVSKCQKIEEIVGHVGEEVKENRIAFSELKVLILNYLSRLTSFCLENYTLEFPSLERVSMI 985 (1209)
Q Consensus 918 ~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~ 985 (1209)
+++|+.|.+.+|..++.++.. -.++|+.|.+++|.++..++ ++|+.|++.
T Consensus 71 P~sLtsL~Lsnc~nLtsLP~~----------LP~nLe~L~Ls~Cs~L~sLP--------~sLe~L~L~ 120 (426)
T PRK15386 71 PNELTEITIENCNNLTTLPGS----------IPEGLEKLTVCHCPEISGLP--------ESVRSLEIK 120 (426)
T ss_pred CCCCcEEEccCCCCcccCCch----------hhhhhhheEccCcccccccc--------cccceEEeC
Confidence 345666666666666544321 13467777777776665442 346666654
No 114
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00018 Score=84.19 Aligned_cols=181 Identities=13% Similarity=0.191 Sum_probs=111.7
Q ss_pred cccchhhHHHHHHHHHHHHhCCCce-EEEEEcCCCChHHHHHHHHHHHHhhcccC-------------------CEEEEE
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLN-IIGVHGMGGVGKTTLVKQIAKQVMEDKVF-------------------DKVVMA 216 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~f-------------------~~~~wv 216 (1209)
...+++|-+...+.+..++..+..+ +..++|+.|+||||+|+.+++..-..... ..++++
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el 91 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM 91 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence 3668899999999999999876655 56899999999999999999876421111 012222
Q ss_pred EcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCcccc
Q 038494 217 EVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDR 290 (1209)
Q Consensus 217 ~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~ 290 (1209)
..+....+ +.++.+..... .+++-++|+|+++... ..+.+...+-...
T Consensus 92 daas~~gI----------------------d~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp---- 145 (535)
T PRK08451 92 DAASNRGI----------------------DDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPP---- 145 (535)
T ss_pred ccccccCH----------------------HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcC----
Confidence 22211112 22222222211 1456789999998663 3333333222211
Q ss_pred ccccCCcEEEEeccch-hhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHH
Q 038494 291 KQDLRRRTIILTSRSK-HLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVA 368 (1209)
Q Consensus 291 ~~~~~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 368 (1209)
..+++|++|.+. .+..........+++.+++.++....+.+.+..... .-.++.++.|++.++|.+--+....
T Consensus 146 ----~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi-~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 146 ----SYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV-SYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred ----CceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 456666666553 222222344678999999999999998877653222 2235677899999999885554443
No 115
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.94 E-value=0.00016 Score=83.20 Aligned_cols=178 Identities=16% Similarity=0.184 Sum_probs=101.3
Q ss_pred cccchhhHHHHHHHHHHHHhC-------------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcC
Q 038494 157 DFEAFDSRMKLFQDVVEALRN-------------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPD 223 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~ 223 (1209)
.+..+.|+++.++++.+.+.. ...+-|.++|++|+|||++|+.+++..... |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh---
Confidence 356788999999999887641 234568899999999999999999876532 222221
Q ss_pred HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCc-------------cccCCCCCCCCcccc
Q 038494 224 VQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGL-------------EEIGIPFGDVDEKDR 290 (1209)
Q Consensus 224 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~-------------~~l~~~~~~~~~~~~ 290 (1209)
.++... ..+ ......+.+.+......+.+|++||++....- ..+...+.... .
T Consensus 199 -~~l~~~---~~g-------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld---~ 264 (389)
T PRK03992 199 -SELVQK---FIG-------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMD---G 264 (389)
T ss_pred -HHHhHh---hcc-------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcc---c
Confidence 111111 011 01233444555444456789999999864100 00100000000 0
Q ss_pred ccccCCcEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCC
Q 038494 291 KQDLRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGL 360 (1209)
Q Consensus 291 ~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 360 (1209)
.....+..||.||.......... .-...+.+++.+.++-.++|+.+........+ .....+++.+.|.
T Consensus 265 ~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~--~~~~~la~~t~g~ 336 (389)
T PRK03992 265 FDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD--VDLEELAELTEGA 336 (389)
T ss_pred cCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc--CCHHHHHHHcCCC
Confidence 00113556777777654332222 12457999999999999999988753322211 1134666666664
No 116
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00021 Score=83.87 Aligned_cols=181 Identities=14% Similarity=0.177 Sum_probs=109.0
Q ss_pred cccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcc-------------------cCCEEEEE
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDK-------------------VFDKVVMA 216 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~~wv 216 (1209)
....++|.+..+..+..++..+.. ..+.++|+.|+||||+|+.++....... .|..++++
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 366789999999999999987654 4567899999999999999998764210 01112222
Q ss_pred EcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCcccc
Q 038494 217 EVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDR 290 (1209)
Q Consensus 217 ~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~ 290 (1209)
..+.... .+.++.+.+... .+++-++|+|+++... ..+.+...+....
T Consensus 94 daas~~g----------------------vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp---- 147 (486)
T PRK14953 94 DAASNRG----------------------IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPP---- 147 (486)
T ss_pred eCccCCC----------------------HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCC----
Confidence 2211111 223333433332 2466799999998652 3334332222211
Q ss_pred ccccCCcEEEEec-cchhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHH
Q 038494 291 KQDLRRRTIILTS-RSKHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVA 368 (1209)
Q Consensus 291 ~~~~~~s~ilvTt-R~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 368 (1209)
....+|++| +...+..........+.+.+++.++....+.+.+..... .-..+.+..|++.++|.+..+....
T Consensus 148 ----~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi-~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 148 ----PRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI-EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred ----CCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 344455544 433332222234568999999999999888887652221 2234667788999999776554443
No 117
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.90 E-value=2.7e-05 Score=86.16 Aligned_cols=94 Identities=18% Similarity=0.208 Sum_probs=65.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCC--cCHHHHHHHHHHHhCCCCCCCCCh-----HHHHH
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTEN--PDVQKIQDKLASDLDLNFDLNDSK-----PHRAK 250 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~--~~~~~l~~~i~~~l~~~~~~~~~~-----~~~~~ 250 (1209)
.....++|+|++|+|||||++.+++....+ +|+...|+.+.+. .++.++++.+...+-...-+.+.. ...+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 345689999999999999999999988764 8998899999866 789999999854332221111110 11111
Q ss_pred HHHHHH-hcCCeEEEEEeCCCcc
Q 038494 251 QLCQRL-TKEKRVLIILDNIWKK 272 (1209)
Q Consensus 251 ~l~~~l-~~~k~~LlvlDdv~~~ 272 (1209)
...+++ .++++.+|++|++...
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 122222 3589999999999765
No 118
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.90 E-value=9.8e-05 Score=78.72 Aligned_cols=175 Identities=11% Similarity=0.125 Sum_probs=99.3
Q ss_pred ccchh-hHH-HHHHHHHHHHh-CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHH
Q 038494 158 FEAFD-SRM-KLFQDVVEALR-NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASD 234 (1209)
Q Consensus 158 ~~~~~-gR~-~~~~~l~~~L~-~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~ 234 (1209)
.++|+ |+. ..+..+.++.. ....+.+.|+|..|+|||+||+.+++.....+ ..+.+++..... ..
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~--~~~~~i~~~~~~------~~---- 84 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG--RNARYLDAASPL------LA---- 84 (227)
T ss_pred hcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEehHHhH------HH----
Confidence 44555 433 33344444443 23446789999999999999999998764321 234555543311 00
Q ss_pred hCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCcc--ccCCCCCCCCccccccccCCc-EEEEeccchhhhcc
Q 038494 235 LDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLE--EIGIPFGDVDEKDRKQDLRRR-TIILTSRSKHLLTN 311 (1209)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~--~l~~~~~~~~~~~~~~~~~~s-~ilvTtR~~~v~~~ 311 (1209)
+ ... ...-+||+||++....+. .+...+.... ..+. .+|+|++.......
T Consensus 85 ~------------------~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~~~-------~~~~~~vl~~~~~~~~~~~ 137 (227)
T PRK08903 85 F------------------DFD--PEAELYAVDDVERLDDAQQIALFNLFNRVR-------AHGQGALLVAGPAAPLALP 137 (227)
T ss_pred H------------------hhc--ccCCEEEEeChhhcCchHHHHHHHHHHHHH-------HcCCcEEEEeCCCCHHhCC
Confidence 0 011 133478899997653221 1211111100 0333 46667665332110
Q ss_pred -------cCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHh
Q 038494 312 -------DMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVANALK 372 (1209)
Q Consensus 312 -------~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~ 372 (1209)
.......++++++++++-..++.+.+.... ..-.++..+.+++...|.+..+..+...+.
T Consensus 138 l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 138 LREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG-LQLADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred CCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 112236899999999887777776543221 222356788899999999988877766543
No 119
>PF14516 AAA_35: AAA-like domain
Probab=97.89 E-value=0.00068 Score=76.20 Aligned_cols=211 Identities=14% Similarity=0.195 Sum_probs=122.1
Q ss_pred ccccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCC-----cCHHHHHHH
Q 038494 156 KDFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTEN-----PDVQKIQDK 230 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~-----~~~~~l~~~ 230 (1209)
.+...+++|...-+++.+.+.+. ...+.|.|+-.+|||+|..++.+..+.. .+ .++++++... .+...+++.
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHH
Confidence 34567889986777888877654 3589999999999999999999888754 23 4457777542 245555555
Q ss_pred HH----HHhCCCCCCC-------CChHHHHHHHHHHHh--cCCeEEEEEeCCCcccCc----cccCCCCCCCCccccccc
Q 038494 231 LA----SDLDLNFDLN-------DSKPHRAKQLCQRLT--KEKRVLIILDNIWKKLGL----EEIGIPFGDVDEKDRKQD 293 (1209)
Q Consensus 231 i~----~~l~~~~~~~-------~~~~~~~~~l~~~l~--~~k~~LlvlDdv~~~~~~----~~l~~~~~~~~~~~~~~~ 293 (1209)
++ ++++....-. .........+.+.+. .+++.+|++|+|+..-.. +++...+..-...+....
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 54 4444432100 011122222333332 258999999999866221 111111100000000000
Q ss_pred c-CCcE-EEEeccchhhhc----ccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 294 L-RRRT-IILTSRSKHLLT----NDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 294 ~-~~s~-ilvTtR~~~v~~----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
. ..-+ |++.+....... ........++|++++.+|...|..++-.. --....++|...+||+|.-+..+
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~~~~~~~l~~~tgGhP~Lv~~~ 239 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FSQEQLEQLMDWTGGHPYLVQKA 239 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CCHHHHHHHHHHHCCCHHHHHHH
Confidence 0 1111 222221111110 11223457899999999999999876432 11233889999999999999999
Q ss_pred HHHHhcC
Q 038494 368 ANALKNK 374 (1209)
Q Consensus 368 ~~~l~~~ 374 (1209)
+..+...
T Consensus 240 ~~~l~~~ 246 (331)
T PF14516_consen 240 CYLLVEE 246 (331)
T ss_pred HHHHHHc
Confidence 9999754
No 120
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00032 Score=77.60 Aligned_cols=199 Identities=13% Similarity=0.151 Sum_probs=116.9
Q ss_pred ccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcc-------------cCCEEEEEEcCCCcC
Q 038494 158 FEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDK-------------VFDKVVMAEVTENPD 223 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~-------------~f~~~~wv~~s~~~~ 223 (1209)
...++|.+..++.+.+.+..+.. ....++|+.|+||+++|..+++..-... .+....|+.-....+
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 45688999999999999987764 7889999999999999999998764321 112234443211000
Q ss_pred HHHHHHHHHHHhCCCCC-CCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCC
Q 038494 224 VQKIQDKLASDLDLNFD-LNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRR 296 (1209)
Q Consensus 224 ~~~l~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~ 296 (1209)
-..+-..-++..+.... ...-..+.++.+.+.+. .+.+-++|+|+++... ....+...+-... ..
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp--------~~ 154 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG--------NG 154 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC--------CC
Confidence 00000111111111000 01112456667776665 2466799999998663 2333322221111 22
Q ss_pred cEEEEeccchhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHH
Q 038494 297 RTIILTSRSKHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVA 368 (1209)
Q Consensus 297 s~ilvTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 368 (1209)
.-|++|++...+..+.......+.+.++++++..+.+.+...... .......++..++|.|..+..+.
T Consensus 155 ~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~----~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 155 TLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI----LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred eEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc----chhHHHHHHHHcCCCHHHHHHHH
Confidence 334445544444444446678999999999999999988753111 11123588999999997665443
No 121
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=2.1e-05 Score=57.94 Aligned_cols=42 Identities=31% Similarity=0.472 Sum_probs=29.0
Q ss_pred CCCcEEEecCcccccccccccCCCCCcEEeccCcccCCcccc
Q 038494 567 EDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDVAAI 608 (1209)
Q Consensus 567 ~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l~~i 608 (1209)
++|++|++++|.|+++|..+++|++|++|++++|.+++++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcCC
Confidence 467778888887777777777777777777777776655433
No 122
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.85 E-value=0.00018 Score=90.47 Aligned_cols=159 Identities=13% Similarity=0.178 Sum_probs=95.2
Q ss_pred ccccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccC----CE-EEEEEcCCCcCHHHHHHH
Q 038494 156 KDFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVF----DK-VVMAEVTENPDVQKIQDK 230 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f----~~-~~wv~~s~~~~~~~l~~~ 230 (1209)
.....++||+.++.++++.|......-+.++|.+|+||||+|+.+++........ +. ++.+.++.-..
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a------- 256 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA------- 256 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc-------
Confidence 3356789999999999999987766777899999999999999999987532211 22 23333322000
Q ss_pred HHHHhCCCCCCCCChHHHHHHHHHHHh-cCCeEEEEEeCCCcccC------ccc---cCCCCCCCCccccccccCCcEEE
Q 038494 231 LASDLDLNFDLNDSKPHRAKQLCQRLT-KEKRVLIILDNIWKKLG------LEE---IGIPFGDVDEKDRKQDLRRRTII 300 (1209)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlvlDdv~~~~~------~~~---l~~~~~~~~~~~~~~~~~~s~il 300 (1209)
.. ....+-++.+..+.+... .+++.+|++|++..... -.+ +..+.... ..-++|
T Consensus 257 ------g~-~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~---------G~l~~I 320 (852)
T TIGR03345 257 ------GA-SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR---------GELRTI 320 (852)
T ss_pred ------cc-ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC---------CCeEEE
Confidence 00 000011344455555553 24689999999876521 111 11111111 234566
Q ss_pred Eeccchhhh------cccCCcceEEEcCCCCHHHHHHHHHHHh
Q 038494 301 LTSRSKHLL------TNDMNSQKIFLIEVLSKEEALQFFEKIV 337 (1209)
Q Consensus 301 vTtR~~~v~------~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 337 (1209)
-||...+.- .........+.+++++.+++.+++....
T Consensus 321 gaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 321 AATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred EecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 666543210 0011344689999999999999975544
No 123
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.84 E-value=0.00011 Score=77.17 Aligned_cols=163 Identities=18% Similarity=0.179 Sum_probs=94.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcC
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKE 259 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 259 (1209)
...+.|+|..|+|||.|.+++++.......-..+++++. .++...+...+.. .....+.+.+.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~---------~~~~~~~~~~~-- 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA------EEFIREFADALRD---------GEIEEFKDRLR-- 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH------HHHHHHHHHHHHT---------TSHHHHHHHHC--
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH------HHHHHHHHHHHHc---------ccchhhhhhhh--
Confidence 457899999999999999999998865322235667754 4455555554432 12234555564
Q ss_pred CeEEEEEeCCCcccC---ccc-cCCCCCCCCccccccccCCcEEEEeccchhhhccc--------CCcceEEEcCCCCHH
Q 038494 260 KRVLIILDNIWKKLG---LEE-IGIPFGDVDEKDRKQDLRRRTIILTSRSKHLLTND--------MNSQKIFLIEVLSKE 327 (1209)
Q Consensus 260 k~~LlvlDdv~~~~~---~~~-l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~--------~~~~~~~~l~~L~~~ 327 (1209)
.-=+|++||++.... |+. +...+.. ....|.++|+|++.....-.. +....++++++.+++
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~-------~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~ 169 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNR-------LIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDE 169 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHH-------HHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HH
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHH-------HHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHH
Confidence 346899999987632 221 1111110 011577899999765321111 234468999999999
Q ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 328 EALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 328 e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
+-.+++.+.+....-. --++++.-|++.+.+..-.+.-+
T Consensus 170 ~r~~il~~~a~~~~~~-l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 170 DRRRILQKKAKERGIE-LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHHHHHHTT---S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CcHHHHHHHHHhhcCCHHHHHHH
Confidence 9999999887522211 23566777777776655444433
No 124
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.81 E-value=0.00044 Score=80.56 Aligned_cols=163 Identities=15% Similarity=0.210 Sum_probs=92.8
Q ss_pred ccccchhhHHHHHHHHHHHHhC-------------CCceEEEEEcCCCChHHHHHHHHHHHHhhccc---CCEEEEEEcC
Q 038494 156 KDFEAFDSRMKLFQDVVEALRN-------------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKV---FDKVVMAEVT 219 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~---f~~~~wv~~s 219 (1209)
....++.|.+..++++.+.+.- ...+-+.++|++|+|||++|+.+++....... +....|+.+.
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEecc
Confidence 3456777899999998887641 12356889999999999999999998753211 1234455544
Q ss_pred CCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHH----hcCCeEEEEEeCCCcccCc--------------cccCCC
Q 038494 220 ENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRL----TKEKRVLIILDNIWKKLGL--------------EEIGIP 281 (1209)
Q Consensus 220 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlvlDdv~~~~~~--------------~~l~~~ 281 (1209)
... +.... . ......++.+.+.. ..+++++|++|+++....- ..+...
T Consensus 259 ~~e----Ll~ky---v-------Gete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 259 GPE----LLNKY---V-------GETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred chh----hcccc---c-------chHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 321 11000 0 00122223333322 2357899999999864210 011111
Q ss_pred CCCCCccccccccCCcEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhC
Q 038494 282 FGDVDEKDRKQDLRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVG 338 (1209)
Q Consensus 282 ~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~ 338 (1209)
+... ....+..||.||.........+ .-...++++..+.++..++|..+..
T Consensus 325 LDgl------~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 325 LDGV------ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred hccc------ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 1000 0113444566665544332222 2245689999999999999999875
No 125
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00029 Score=85.48 Aligned_cols=198 Identities=13% Similarity=0.146 Sum_probs=115.4
Q ss_pred cccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHh
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDL 235 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l 235 (1209)
...+++|.+..++.|..++..+.. ..+.++|..|+||||+|+.+++......... -....+.....+.+....
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCC
Confidence 366899999999999998886554 4568999999999999999998875321110 001111122233333222
Q ss_pred CCCC---CC-CCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccc
Q 038494 236 DLNF---DL-NDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRS 305 (1209)
Q Consensus 236 ~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~ 305 (1209)
..+. +. .....+.++.+.+.+. .+++-++|+|+++... ..+.+...+.... ..+.+|++|..
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp--------~~tv~Il~t~~ 159 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPP--------PHAIFILATTE 159 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCC--------CCeEEEEEeCC
Confidence 1110 00 0111333444444333 1456799999997652 3444433222211 35556665543
Q ss_pred -hhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 038494 306 -KHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVAN 369 (1209)
Q Consensus 306 -~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 369 (1209)
..+..........+++.+++.++....+.+.+...... -..+.+..|++.++|.+..+.....
T Consensus 160 ~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 160 VHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-LEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred hhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33322222345678899999999998888876532211 2246788999999998865554443
No 126
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.80 E-value=0.00016 Score=81.58 Aligned_cols=149 Identities=13% Similarity=0.180 Sum_probs=86.3
Q ss_pred cccccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHH
Q 038494 155 AKDFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLAS 233 (1209)
Q Consensus 155 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~ 233 (1209)
|....+++|.+...+.+.+++..+.. .++.++|++|+|||++|+.+++.... .+..++.+. .....+ +..+.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~~i-~~~l~ 89 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRIDFV-RNRLT 89 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHHHH-HHHHH
Confidence 34467889999999999999986654 46666999999999999999887532 123444443 222111 11111
Q ss_pred HhCCCCCCCCChHHHHHHHHHHHh-cCCeEEEEEeCCCccc--C-ccccCCCCCCCCccccccccCCcEEEEeccchhhh
Q 038494 234 DLDLNFDLNDSKPHRAKQLCQRLT-KEKRVLIILDNIWKKL--G-LEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLL 309 (1209)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlvlDdv~~~~--~-~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 309 (1209)
. ...... .+.+-+||+||++... . .+.+...+.... .++++|+||......
T Consensus 90 ~-----------------~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~--------~~~~~Ilt~n~~~~l 144 (316)
T PHA02544 90 R-----------------FASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYS--------KNCSFIITANNKNGI 144 (316)
T ss_pred H-----------------HHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcC--------CCceEEEEcCChhhc
Confidence 1 111110 1245689999997651 1 112211111111 567888888654321
Q ss_pred -cccCCcceEEEcCCCCHHHHHHHHHH
Q 038494 310 -TNDMNSQKIFLIEVLSKEEALQFFEK 335 (1209)
Q Consensus 310 -~~~~~~~~~~~l~~L~~~e~~~lf~~ 335 (1209)
.........+.++..+.++..+++..
T Consensus 145 ~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 145 IEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 11123345677777888887766554
No 127
>PRK05642 DNA replication initiation factor; Validated
Probab=97.80 E-value=0.00028 Score=75.05 Aligned_cols=153 Identities=18% Similarity=0.204 Sum_probs=92.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCC
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEK 260 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 260 (1209)
..+.|+|..|+|||.|++.+++....+ -..++|++..+ +... ...+.+.+.+ -
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~------------------~~~~~~~~~~-~ 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR------------------GPELLDNLEQ-Y 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh------------------hHHHHHhhhh-C
Confidence 578999999999999999999876543 24567777532 1110 1123344432 2
Q ss_pred eEEEEEeCCCcc---cCccc-cCCCCCCCCccccccccCCcEEEEeccchhhhccc--------CCcceEEEcCCCCHHH
Q 038494 261 RVLIILDNIWKK---LGLEE-IGIPFGDVDEKDRKQDLRRRTIILTSRSKHLLTND--------MNSQKIFLIEVLSKEE 328 (1209)
Q Consensus 261 ~~LlvlDdv~~~---~~~~~-l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~--------~~~~~~~~l~~L~~~e 328 (1209)
=+||+||+... ..|+. +...+.... ..|.++|+|++.....-.. .....++++++++.++
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~-------~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~ 170 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNRLR-------DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDED 170 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHHHH-------hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHH
Confidence 36889999754 23432 222221111 1467799988764321111 1233678999999999
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 038494 329 ALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVAN 369 (1209)
Q Consensus 329 ~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 369 (1209)
-..+++.++.... -.--+++..-|++++.|-.-.+..+-.
T Consensus 171 ~~~il~~ka~~~~-~~l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 171 KLRALQLRASRRG-LHLTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 9999986654321 112256777888888877655544433
No 128
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00043 Score=82.63 Aligned_cols=196 Identities=14% Similarity=0.175 Sum_probs=112.8
Q ss_pred ccccchhhHHHHHHHHHHHHhCCCce-EEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHH
Q 038494 156 KDFEAFDSRMKLFQDVVEALRNDKLN-IIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASD 234 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~ 234 (1209)
....+++|-+..+..|..++.++..+ .+.++|+.|+||||+|+.+++..-....... ..+....+- +.+...
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~~~ 85 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSIDND 85 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHHcC
Confidence 34668899999999999999876554 5789999999999999999988753211100 001100000 111111
Q ss_pred hCCC---CC-CCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEecc
Q 038494 235 LDLN---FD-LNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSR 304 (1209)
Q Consensus 235 l~~~---~~-~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 304 (1209)
-..+ .+ ......+.++.+.+.+. .+++-++|+|+++... +++.+...+.... ....+|++|.
T Consensus 86 ~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp--------~~~vfI~~tt 157 (563)
T PRK06647 86 NSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPP--------PYIVFIFATT 157 (563)
T ss_pred CCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCC--------CCEEEEEecC
Confidence 0000 00 00011233333433222 2456689999998763 3445544433222 4555665554
Q ss_pred c-hhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 305 S-KHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 305 ~-~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
. ..+..........+++.+++.++....+.+.+.... ..-..+.+..|++.++|.+-.+...
T Consensus 158 e~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg-i~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 158 EVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ-IKYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred ChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3 333222234456789999999999888888764222 2223567778999999977544443
No 129
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.79 E-value=0.00025 Score=76.17 Aligned_cols=170 Identities=17% Similarity=0.168 Sum_probs=106.2
Q ss_pred cchhhHHHHHHHHHHHHhCCCc---eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHh
Q 038494 159 EAFDSRMKLFQDVVEALRNDKL---NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDL 235 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~~~~~---~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l 235 (1209)
..|-+|+..+..+...+.+... ..|.|+|.+|.|||.+.+++.+..... -+|+++-+.++.+.++..|+...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~-----~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE-----NVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc-----ceeeehHHhccHHHHHHHHHHHh
Confidence 3577999999999998875443 345899999999999999999888432 47999999999999999999998
Q ss_pred CCCCCCCCCh---HHHHHHHHHHHh-------cCCeEEEEEeCCCcccCccccCCCCCCCCccccccccCCcEEEEeccc
Q 038494 236 DLNFDLNDSK---PHRAKQLCQRLT-------KEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRS 305 (1209)
Q Consensus 236 ~~~~~~~~~~---~~~~~~l~~~l~-------~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~ 305 (1209)
+....+.... .+........+. .++.++||||+++...+.+....+.- -....+...+. -+|+++-.
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l--~~L~el~~~~~-i~iils~~ 157 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCL--FRLYELLNEPT-IVIILSAP 157 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHH--HHHHHHhCCCc-eEEEEecc
Confidence 6222221111 122222222222 24689999999988755443211100 00000001132 33444332
Q ss_pred --hhhhc--ccCCcceEEEcCCCCHHHHHHHHHHH
Q 038494 306 --KHLLT--NDMNSQKIFLIEVLSKEEALQFFEKI 336 (1209)
Q Consensus 306 --~~v~~--~~~~~~~~~~l~~L~~~e~~~lf~~~ 336 (1209)
+.... .+.....++..+.-+.+|...++.+.
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 22221 12234457888999999999998664
No 130
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.78 E-value=3e-07 Score=104.74 Aligned_cols=175 Identities=23% Similarity=0.208 Sum_probs=101.3
Q ss_pred cCCeEEEEccCCCCccCCCcCC-CCCccEEEeccCCC--------cccccChhhhcCCCCCcEEEecCcccccccccccC
Q 038494 518 QKGAIAISIPYGDIQELPERLE-CPQLKLLLLLANGD--------SYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGH 588 (1209)
Q Consensus 518 ~~~~r~l~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~--------~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~ 588 (1209)
-+.+|++-+.++++..+..... -.+|..|.....-. .+.++.++. ....|.+.++++|.+..+-.++.-
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~SLql 185 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDESLQL 185 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHHHHH
Confidence 3578888888877665433221 23444444333210 111111111 134566777777777766667777
Q ss_pred CCCCcEEeccCcccCCcccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECC
Q 038494 589 LINLQTLCLDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMG 668 (1209)
Q Consensus 589 l~~L~~L~l~~~~l~~l~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~ 668 (1209)
++.|+.|+|++|+++....+..|++|++||+++|.+..+|.--..-.+|+.|.+++ +.++.+- ++.+|.+|+.|+++
T Consensus 186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~--gie~LksL~~LDls 262 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN-NALTTLR--GIENLKSLYGLDLS 262 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecc-cHHHhhh--hHHhhhhhhccchh
Confidence 77778888888777777777777778888888777777765322223477777777 5565552 26777777777776
Q ss_pred CCCCccccccCCCccchhhhCCCCCCCEEEeeccCC
Q 038494 669 DSFPQWDKVEGGSNASLAELKGLSKLTTLEIQVQDA 704 (1209)
Q Consensus 669 ~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~ 704 (1209)
.|.+. .-..+.-|..|..|+.|.+.+|.+
T Consensus 263 yNll~-------~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 263 YNLLS-------EHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred Hhhhh-------cchhhhHHHHHHHHHHHhhcCCcc
Confidence 65421 111133344444555666655544
No 131
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.78 E-value=0.00018 Score=89.94 Aligned_cols=157 Identities=16% Similarity=0.220 Sum_probs=94.7
Q ss_pred cccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhccc---C-CEEEE-EEcCCCcCHHHHHHHH
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKV---F-DKVVM-AEVTENPDVQKIQDKL 231 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~---f-~~~~w-v~~s~~~~~~~l~~~i 231 (1209)
....++||++++.++++.|......-+.++|.+|+|||++|+.+++....... + +..+| +++ ..+
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~------~~l---- 249 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM------GSL---- 249 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH------HHH----
Confidence 34578999999999999988766667789999999999999999998754221 1 23333 221 111
Q ss_pred HHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCc----------cc-cCCCCCCCCccccccccCCcEEE
Q 038494 232 ASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGL----------EE-IGIPFGDVDEKDRKQDLRRRTII 300 (1209)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~----------~~-l~~~~~~~~~~~~~~~~~~s~il 300 (1209)
..... ...+.++.+..+.+++...++.+|++|+++....- .. +...+. ...-++|
T Consensus 250 ~a~~~----~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~----------~g~i~~I 315 (731)
T TIGR02639 250 LAGTK----YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS----------SGKLRCI 315 (731)
T ss_pred hhhcc----ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh----------CCCeEEE
Confidence 11000 00111455666776665456799999999854210 01 111111 0223455
Q ss_pred Eeccchhh----h--cccCCcceEEEcCCCCHHHHHHHHHHHh
Q 038494 301 LTSRSKHL----L--TNDMNSQKIFLIEVLSKEEALQFFEKIV 337 (1209)
Q Consensus 301 vTtR~~~v----~--~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 337 (1209)
-+|...+. . .........+.+++++.++..+++....
T Consensus 316 gaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred EecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 55543221 0 0011234678999999999999998654
No 132
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.77 E-value=9e-05 Score=83.64 Aligned_cols=109 Identities=18% Similarity=0.267 Sum_probs=73.8
Q ss_pred cchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 038494 159 EAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLN 238 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~ 238 (1209)
...++.+..++.+...+... +.|.++|++|+|||++|+.+++.......|+.+.||.++...+..+++..+.-. +..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCC
Confidence 34567788889999888653 478889999999999999999988766678899999999988877765433110 100
Q ss_pred CCCCCChHHHHHHHHHHHh--cCCeEEEEEeCCCccc
Q 038494 239 FDLNDSKPHRAKQLCQRLT--KEKRVLIILDNIWKKL 273 (1209)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~--~~k~~LlvlDdv~~~~ 273 (1209)
.... ......+..... .++++++|+|++....
T Consensus 252 y~~~---~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 252 FRRK---DGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred eEec---CchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 0000 111111222221 2468999999998763
No 133
>PLN03150 hypothetical protein; Provisional
Probab=97.77 E-value=5e-05 Score=93.05 Aligned_cols=102 Identities=20% Similarity=0.358 Sum_probs=75.2
Q ss_pred CCcEEEecCcccc-cccccccCCCCCcEEeccCcccCCc--ccccCCCCCCEEEccCCCCC-ccchhccCCCCCCEEecc
Q 038494 568 DLKVLSLSGIHFS-SLSSSLGHLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRYSDIK-QLPLEIGQLAQLQLLDLS 643 (1209)
Q Consensus 568 ~Lr~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~-~lp~~i~~L~~L~~L~l~ 643 (1209)
.++.|+|+++.+. .+|..++.+++|++|+|++|.+... ..++.+++|++|++++|.+. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4678888888886 6788888888888888888887643 57888888888888888887 678888888888888888
Q ss_pred CCCCCcccCchhhcC-CCCCcEEECCCC
Q 038494 644 NCSSLVVIAPNVISK-FSRLEELYMGDS 670 (1209)
Q Consensus 644 ~~~~l~~~~~~~l~~-L~~L~~L~l~~~ 670 (1209)
+|.....+|.. ++. ..++..+++.+|
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCC
Confidence 84433344433 543 345556665543
No 134
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.75 E-value=0.0002 Score=83.61 Aligned_cols=168 Identities=15% Similarity=0.115 Sum_probs=105.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCC
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEK 260 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 260 (1209)
..+.|+|..|+|||+|++.+++.......-..+++++. .++...+...++.. ........+.+. .
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~-------~~~~~~~~~~~~--~ 206 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKT-------HKEIEQFKNEIC--Q 206 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHh-------hhHHHHHHHHhc--c
Confidence 56899999999999999999997654322234555544 44666666655421 123334445453 3
Q ss_pred eEEEEEeCCCccc---Cc-cccCCCCCCCCccccccccCCcEEEEeccchhhhc--------ccCCcceEEEcCCCCHHH
Q 038494 261 RVLIILDNIWKKL---GL-EEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLLT--------NDMNSQKIFLIEVLSKEE 328 (1209)
Q Consensus 261 ~~LlvlDdv~~~~---~~-~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~--------~~~~~~~~~~l~~L~~~e 328 (1209)
.-+||+||+.... .+ +.+...+.... ..|..||+|+....... ......-++.+++++.++
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~-------~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~ 279 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFI-------ENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKT 279 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHH-------HcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHH
Confidence 4589999997652 11 22222111110 14557888876542110 012334678899999999
Q ss_pred HHHHHHHHhCCCCC-CCcchHHHHHHHHHhCCChhHHHHHHHH
Q 038494 329 ALQFFEKIVGNSAK-ASAFQPLADEIVGKCGGLPVALSTVANA 370 (1209)
Q Consensus 329 ~~~lf~~~~~~~~~-~~~~~~~~~~i~~~~~glPLai~~~~~~ 370 (1209)
-.+++.+++..... ..-.++++.-|++.++|.|-.+.-+...
T Consensus 280 r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 280 ATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 99999998863221 1334678889999999999877766543
No 135
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=3.6e-06 Score=86.30 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=29.3
Q ss_pred cCCccEEEEecCCCccccccHHHHhhcccccEEEEeccccc
Q 038494 845 FSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNKL 885 (1209)
Q Consensus 845 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 885 (1209)
=.+|+.|+|+.|..++.....-.+++++.|.+|+|+.|...
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 35677778888877776655556677888888888887543
No 136
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.74 E-value=0.00032 Score=80.60 Aligned_cols=179 Identities=16% Similarity=0.158 Sum_probs=100.1
Q ss_pred ccccchhhHHHHHHHHHHHHh----C---------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc
Q 038494 156 KDFEAFDSRMKLFQDVVEALR----N---------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP 222 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~ 222 (1209)
....++.|.+..++++.+++. . ...+.+.++|++|+|||++|+.+++..... | +.+..+.
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~--f---i~V~~se-- 252 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT--F---LRVVGSE-- 252 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC--E---EEEecch--
Confidence 335667899999988888764 1 123568899999999999999999976532 3 1122111
Q ss_pred CHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCcc-------ccc----
Q 038494 223 DVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEK-------DRK---- 291 (1209)
Q Consensus 223 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~-------~~~---- 291 (1209)
+... ..+ .....+..+......+.+.+|++|+++....-.. ... .++.. ..+
T Consensus 253 ----L~~k---~~G-------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~--~~~-sgg~~e~qr~ll~LL~~Ld 315 (438)
T PTZ00361 253 ----LIQK---YLG-------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRY--DAT-SGGEKEIQRTMLELLNQLD 315 (438)
T ss_pred ----hhhh---hcc-------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCC--CCC-CcccHHHHHHHHHHHHHHh
Confidence 1110 011 1123344455444456789999999875411000 000 00000 000
Q ss_pred --cccCCcEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCC
Q 038494 292 --QDLRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGL 360 (1209)
Q Consensus 292 --~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 360 (1209)
....+.+||+||...+...... .....++++..+.++..++|..+.....-..+ .....++..+.|.
T Consensus 316 g~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d--vdl~~la~~t~g~ 388 (438)
T PTZ00361 316 GFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED--VDLEEFIMAKDEL 388 (438)
T ss_pred hhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC--cCHHHHHHhcCCC
Confidence 0114567888887655433222 23467899999999999999987753221111 1123555566554
No 137
>PLN03150 hypothetical protein; Provisional
Probab=97.73 E-value=6.9e-05 Score=91.86 Aligned_cols=104 Identities=21% Similarity=0.323 Sum_probs=85.4
Q ss_pred CccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccc-cccccccCCCCCcEEeccCcccCCc--ccccCCCCCCEEE
Q 038494 542 QLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFS-SLSSSLGHLINLQTLCLDWCQLEDV--AAIGQLKKLEILS 618 (1209)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~ 618 (1209)
.++.|++.++. ....+|. .+..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|.+... ..++++++|++|+
T Consensus 419 ~v~~L~L~~n~-L~g~ip~-~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQG-LRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCC-ccccCCH-HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 36778887774 2334554 4689999999999999997 7899999999999999999998754 7799999999999
Q ss_pred ccCCCCC-ccchhccCC-CCCCEEeccCCCC
Q 038494 619 FRYSDIK-QLPLEIGQL-AQLQLLDLSNCSS 647 (1209)
Q Consensus 619 l~~~~~~-~lp~~i~~L-~~L~~L~l~~~~~ 647 (1209)
+++|.+. .+|..++.+ .++..+++.++..
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCcc
Confidence 9999887 889888764 5677888877543
No 138
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.72 E-value=0.00021 Score=90.57 Aligned_cols=157 Identities=17% Similarity=0.212 Sum_probs=94.4
Q ss_pred ccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccC----CEEEEEEcCCCcCHHHHHHHHHH
Q 038494 158 FEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVF----DKVVMAEVTENPDVQKIQDKLAS 233 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f----~~~~wv~~s~~~~~~~l~~~i~~ 233 (1209)
...++||+++++++++.|......-+.++|.+|+|||++|+.+++........ +..+|. + +...++
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----- 247 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----- 247 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh-----
Confidence 45689999999999999986666677899999999999999999887532111 233442 1 111111
Q ss_pred HhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCc---------cccCCCCCCCCccccccccCCcEEEEecc
Q 038494 234 DLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGL---------EEIGIPFGDVDEKDRKQDLRRRTIILTSR 304 (1209)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~---------~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 304 (1209)
...... .+-++.+..+.+++...++.+|++|++.....- ..+..+.. ....-++|.+|.
T Consensus 248 --ag~~~~-ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l---------~rg~l~~IgaTt 315 (821)
T CHL00095 248 --AGTKYR-GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL---------ARGELQCIGATT 315 (821)
T ss_pred --ccCCCc-cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHH---------hCCCcEEEEeCC
Confidence 111111 112455666777666557899999999754210 01111110 012345666665
Q ss_pred chhhh------cccCCcceEEEcCCCCHHHHHHHHHHH
Q 038494 305 SKHLL------TNDMNSQKIFLIEVLSKEEALQFFEKI 336 (1209)
Q Consensus 305 ~~~v~------~~~~~~~~~~~l~~L~~~e~~~lf~~~ 336 (1209)
..... .........+.+...+.++...++...
T Consensus 316 ~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 316 LDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 54321 111234467889999999988888654
No 139
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.72 E-value=0.0006 Score=81.85 Aligned_cols=193 Identities=15% Similarity=0.152 Sum_probs=111.3
Q ss_pred cccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHh
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDL 235 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l 235 (1209)
....++|.+...+.+..++..+.. ..+.++|+.|+||||+|+.+++........+. .+.+....-+.+....
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C~~i~~g~ 86 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEICKAITNGS 86 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHHHHHhcCC
Confidence 366899999999999999986554 45678999999999999999987643221110 0111111112221111
Q ss_pred CCCC---C-CCCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCccccCCCCCCCCccccccccCCcEEEE-ecc
Q 038494 236 DLNF---D-LNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKK--LGLEEIGIPFGDVDEKDRKQDLRRRTIIL-TSR 304 (1209)
Q Consensus 236 ~~~~---~-~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilv-TtR 304 (1209)
..+. + ......+.++.+..... .+++-++|+|+++.. ..+..+...+.... ....+|+ ||.
T Consensus 87 ~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp--------~~~ifIlatt~ 158 (559)
T PRK05563 87 LMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPP--------AHVIFILATTE 158 (559)
T ss_pred CCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCC--------CCeEEEEEeCC
Confidence 1100 0 00111344445544433 246678999999866 23444433332211 3444454 444
Q ss_pred chhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHH
Q 038494 305 SKHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALS 365 (1209)
Q Consensus 305 ~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 365 (1209)
...+..........+++.+++.++....+...+..... .-..+.++.|++.++|-+..+.
T Consensus 159 ~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi-~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 159 PHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI-EYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred hhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 43333322345578899999999999888887642221 1224667788899988765443
No 140
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.71 E-value=4.6e-05 Score=84.91 Aligned_cols=119 Identities=24% Similarity=0.327 Sum_probs=71.7
Q ss_pred CCcccEEecccccccchhcccccccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEecccccccccccCCCCC
Q 038494 817 FPLLESLSLYKLINLEAICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKP 896 (1209)
Q Consensus 817 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 896 (1209)
+++++.|++++| .++.++ .+ .++|+.|.+++|..++.+|.. + .++|+.|.+++|..+..+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP--~L-----P~sLtsL~Lsnc~nLtsLP~~--L--P~nLe~L~Ls~Cs~L~sL-------- 110 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP--VL-----PNELTEITIENCNNLTTLPGS--I--PEGLEKLTVCHCPEISGL-------- 110 (426)
T ss_pred hcCCCEEEeCCC-CCcccC--CC-----CCCCcEEEccCCCCcccCCch--h--hhhhhheEccCccccccc--------
Confidence 578889999987 666653 11 246999999999988887751 1 368899999988665432
Q ss_pred CccccccccccCCCCCCCccCccccceEeeccccchhhhhccccccccccccccccchhhhhccCCcccccccccccccC
Q 038494 897 TTSLGFNEIIADDDTAPKVGIPSSLVNLKVSKCQKIEEIVGHVGEEVKENRIAFSELKVLILNYLSRLTSFCLENYTLEF 976 (1209)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~l~~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~ 976 (1209)
+++|+.|++.+. ....+. .-.++|+.|.+.++.......... .-.
T Consensus 111 ---------------------P~sLe~L~L~~n-~~~~L~-----------~LPssLk~L~I~~~n~~~~~~lp~--~LP 155 (426)
T PRK15386 111 ---------------------PESVRSLEIKGS-ATDSIK-----------NVPNGLTSLSINSYNPENQARIDN--LIS 155 (426)
T ss_pred ---------------------ccccceEEeCCC-CCcccc-----------cCcchHhheecccccccccccccc--ccC
Confidence 356777776532 211110 112467777764432221111111 012
Q ss_pred CCcceEeeccCCCc
Q 038494 977 PSLERVSMIRCPNM 990 (1209)
Q Consensus 977 ~~L~~L~i~~C~~L 990 (1209)
++|++|.|.+|..+
T Consensus 156 sSLk~L~Is~c~~i 169 (426)
T PRK15386 156 PSLKTLSLTGCSNI 169 (426)
T ss_pred CcccEEEecCCCcc
Confidence 57888888888755
No 141
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=2.2e-06 Score=87.79 Aligned_cols=186 Identities=18% Similarity=0.166 Sum_probs=90.3
Q ss_pred CccEEEEecCCCccccccHHHHhhcccccEEEEecccccccccccCCCCCCccccccccccCCCCCCCccCccccceEee
Q 038494 847 NLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKPTTSLGFNEIIADDDTAPKVGIPSSLVNLKV 926 (1209)
Q Consensus 847 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~sL~~L~l 926 (1209)
+|+.|++++- .++.-.-...++++..|+.|.|.+.. +.+-+. ..+.-..+|+.|++
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~----------------------~~iAkN~~L~~lnl 241 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLR-LDDPIV----------------------NTIAKNSNLVRLNL 241 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccc-cCcHHH----------------------HHHhccccceeecc
Confidence 4666666663 33332223445566666666666532 211111 11122356677777
Q ss_pred ccccchhhhhccccccccccccccccchhhhhccCCcccccccccccccCCCcceEeeccCCCccccccCccccCCCccc
Q 038494 927 SKCQKIEEIVGHVGEEVKENRIAFSELKVLILNYLSRLTSFCLENYTLEFPSLERVSMIRCPNMKTFSQGILSIPKPCKV 1006 (1209)
Q Consensus 927 ~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~p~~~ 1006 (1209)
+.|..++...... ....|+.|..|.|+.|............+--++|..|.+++|.+--. .
T Consensus 242 sm~sG~t~n~~~l------l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~--~----------- 302 (419)
T KOG2120|consen 242 SMCSGFTENALQL------LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ--K----------- 302 (419)
T ss_pred ccccccchhHHHH------HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh--h-----------
Confidence 7776665432211 23456666666666666444332222223345566666666542110 0
Q ss_pred ccccccccccccccccccchhhhhhhh-hhccccccceEEeeccCCceeeccCCCCCcccCCCccEEEEecCCCCccccc
Q 038494 1007 QVTEKEEGELHHWEGNNLNSIMQKYYK-EMIGFRDIWYLQLSHFPRLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIP 1085 (1209)
Q Consensus 1007 ~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 1085 (1209)
.... -...+|.|.+||+++|..++.-- ...+-.|+.|++|.++.|+.+. |
T Consensus 303 -----------------------sh~~tL~~rcp~l~~LDLSD~v~l~~~~---~~~~~kf~~L~~lSlsRCY~i~---p 353 (419)
T KOG2120|consen 303 -----------------------SHLSTLVRRCPNLVHLDLSDSVMLKNDC---FQEFFKFNYLQHLSLSRCYDII---P 353 (419)
T ss_pred -----------------------hHHHHHHHhCCceeeeccccccccCchH---HHHHHhcchheeeehhhhcCCC---h
Confidence 0000 01245666667776666665311 1123455667777777776552 3
Q ss_pred hh--hHhhhccCcEEEEccCC
Q 038494 1086 AN--LLRCLNNLRRLEVRNCD 1104 (1209)
Q Consensus 1086 ~~--~~~~l~~L~~L~i~~c~ 1104 (1209)
.. .+...++|.+|++-+|-
T Consensus 354 ~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 354 ETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHeeeeccCcceEEEEecccc
Confidence 22 12344566666666654
No 142
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.002 Score=68.92 Aligned_cols=199 Identities=16% Similarity=0.203 Sum_probs=121.6
Q ss_pred ccchhhHHHHHHHHHHHHh----C---------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCH
Q 038494 158 FEAFDSRMKLFQDVVEALR----N---------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDV 224 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~ 224 (1209)
+.++=|-++.+++|.+.+. + +..+-|.+||++|.|||-||++|++.-... | +.+...
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At--F-----IrvvgS--- 219 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT--F-----IRVVGS--- 219 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce--E-----EEeccH---
Confidence 4556688999999998876 1 234568899999999999999999987754 4 333322
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC--c--------------cccCCCCCCCCcc
Q 038494 225 QKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLG--L--------------EEIGIPFGDVDEK 288 (1209)
Q Consensus 225 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~--~--------------~~l~~~~~~~~~~ 288 (1209)
++.+ +.+|- ....++.+.+.-+...+.+|.+|.++.... . -.+...+...
T Consensus 220 -ElVq---KYiGE-------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF--- 285 (406)
T COG1222 220 -ELVQ---KYIGE-------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF--- 285 (406)
T ss_pred -HHHH---HHhcc-------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC---
Confidence 1111 11221 156677777777777899999999976511 0 0011111100
Q ss_pred ccccccCCcEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhC--CCCCCCcchHHHHHHHHHhCCCh-
Q 038494 289 DRKQDLRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVG--NSAKASAFQPLADEIVGKCGGLP- 361 (1209)
Q Consensus 289 ~~~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~--~~~~~~~~~~~~~~i~~~~~glP- 361 (1209)
....+-|||..|-..++..-+. .-...++++.-+.+.-.++|+-|+. ...+.-+++ .|++.+.|.-
T Consensus 286 ---D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sG 358 (406)
T COG1222 286 ---DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSG 358 (406)
T ss_pred ---CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCch
Confidence 1125679999988776553222 2346788886666666788887775 223334444 5666666654
Q ss_pred ---hHHHHHHHHHh---cC---ChhHHHHHHHHHh
Q 038494 362 ---VALSTVANALK---NK---KLPVWKDALTQLR 387 (1209)
Q Consensus 362 ---Lai~~~~~~l~---~~---~~~~w~~~~~~l~ 387 (1209)
-|+.+=|++++ .+ +.+++.++.++..
T Consensus 359 AdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 359 ADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 35566677765 12 4556666665543
No 143
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.00054 Score=82.72 Aligned_cols=195 Identities=13% Similarity=0.187 Sum_probs=110.7
Q ss_pred cccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHh
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDL 235 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l 235 (1209)
...+++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++........+. ...+....-+.|...-
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~g~ 86 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITEGR 86 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhcCC
Confidence 366899999999999999987665 45689999999999999999988643211100 0000011111111100
Q ss_pred CCCC---C-CCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEec-c
Q 038494 236 DLNF---D-LNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTS-R 304 (1209)
Q Consensus 236 ~~~~---~-~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTt-R 304 (1209)
..+. + ......+.++.+...+. .+++-++|+|+++... ..+.+...+-... ....+|++| .
T Consensus 87 ~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp--------~~~~fIl~t~~ 158 (576)
T PRK14965 87 SVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPP--------PHVKFIFATTE 158 (576)
T ss_pred CCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCC--------CCeEEEEEeCC
Confidence 0000 0 00111334444444443 2355689999998663 3333332222211 355555544 4
Q ss_pred chhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCCh-hHHHHH
Q 038494 305 SKHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLP-VALSTV 367 (1209)
Q Consensus 305 ~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~ 367 (1209)
...+..........+++.+++.++....+...+..... .-..+.+..|++.++|.. .|+..+
T Consensus 159 ~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi-~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 159 PHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI-SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44444333345678899999999998888776642221 123466778999998865 444444
No 144
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.001 Score=74.11 Aligned_cols=156 Identities=16% Similarity=0.199 Sum_probs=94.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccC-------------------CEEEEEEcCCCcCHHHHHHHHHHHhCCCCC
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVF-------------------DKVVMAEVTENPDVQKIQDKLASDLDLNFD 240 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f-------------------~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~ 240 (1209)
...+.++|+.|+|||++|+.+++..-.+... ....|+.-...
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~------------------- 82 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA------------------- 82 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-------------------
Confidence 3567899999999999999999887542211 01122211000
Q ss_pred CCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccchh-hhcccC
Q 038494 241 LNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKH-LLTNDM 313 (1209)
Q Consensus 241 ~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-v~~~~~ 313 (1209)
......+.++.+.+.+. .+++-++|+|+++... ....+...+-... .++.+|+||.+.. +..+..
T Consensus 83 ~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp--------~~~~fiL~t~~~~~ll~TI~ 154 (328)
T PRK05707 83 DKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPS--------GDTVLLLISHQPSRLLPTIK 154 (328)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCC--------CCeEEEEEECChhhCcHHHH
Confidence 01112455555555554 2345566789998763 3444433332222 4566777776653 433334
Q ss_pred CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 314 NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 314 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
.....+.+.+++.+++.+.+...... ...+.+..++..++|.|+....+
T Consensus 155 SRc~~~~~~~~~~~~~~~~L~~~~~~-----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 155 SRCQQQACPLPSNEESLQWLQQALPE-----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred hhceeeeCCCcCHHHHHHHHHHhccc-----CChHHHHHHHHHcCCCHHHHHHH
Confidence 56678999999999999999876421 12345667889999999755444
No 145
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.62 E-value=0.0012 Score=75.55 Aligned_cols=177 Identities=14% Similarity=0.165 Sum_probs=101.0
Q ss_pred ccccchhhHHHHHHHHHHHHh----C---------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc
Q 038494 156 KDFEAFDSRMKLFQDVVEALR----N---------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP 222 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~ 222 (1209)
....++.|-+..++++.+.+. . ...+-|.++|++|+|||++|+.+++..... | +.+..
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--f---i~i~~---- 212 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F---IRVVG---- 212 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E---EEEeh----
Confidence 346678898888888887664 1 134678899999999999999999876532 2 22211
Q ss_pred CHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCc----------------cccCCCCCCCC
Q 038494 223 DVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGL----------------EEIGIPFGDVD 286 (1209)
Q Consensus 223 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~----------------~~l~~~~~~~~ 286 (1209)
..+... ..+ .....++.+........+.+|++|+++....- ..+...+..
T Consensus 213 --s~l~~k---~~g-------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~-- 278 (398)
T PTZ00454 213 --SEFVQK---YLG-------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDG-- 278 (398)
T ss_pred --HHHHHH---hcc-------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhc--
Confidence 111111 111 11334445555555567899999998754100 000000000
Q ss_pred ccccccccCCcEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCCh
Q 038494 287 EKDRKQDLRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLP 361 (1209)
Q Consensus 287 ~~~~~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 361 (1209)
.....+..||+||...+...... .-...+.++..+.++..++|..+.......++ -...++++.+.|.-
T Consensus 279 ----~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d--vd~~~la~~t~g~s 351 (398)
T PTZ00454 279 ----FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE--VDLEDFVSRPEKIS 351 (398)
T ss_pred ----cCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc--cCHHHHHHHcCCCC
Confidence 00114567888887654432211 23457889999999988888877653221111 11346666666653
No 146
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.62 E-value=0.02 Score=59.57 Aligned_cols=183 Identities=19% Similarity=0.210 Sum_probs=100.0
Q ss_pred cccccchhhHHHHHHHHHHHHh-----CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHH
Q 038494 155 AKDFEAFDSRMKLFQDVVEALR-----NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQD 229 (1209)
Q Consensus 155 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~ 229 (1209)
|....+|+|.++.++.+.=++. +.....|.++|++|.||||||.-+++...++ +. ++-+....
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~k----~tsGp~le------ 89 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--LK----ITSGPALE------ 89 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--eE----eccccccc------
Confidence 3446789999888777765554 3446789999999999999999999998765 11 11111000
Q ss_pred HHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc---------CccccCC--CCCCCCccccc-cccCC-
Q 038494 230 KLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL---------GLEEIGI--PFGDVDEKDRK-QDLRR- 296 (1209)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~---------~~~~l~~--~~~~~~~~~~~-~~~~~- 296 (1209)
....+..+...+. +.=++.+|.+.... ..+++.. ..+.+..+... -..+.
T Consensus 90 ---------------K~gDlaaiLt~Le--~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 90 ---------------KPGDLAAILTNLE--EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred ---------------ChhhHHHHHhcCC--cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 0112222333332 33455566655431 1122111 01111000000 00011
Q ss_pred cEEEEeccchhhhccc-CCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 297 RTIILTSRSKHLLTND-MNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 297 s~ilvTtR~~~v~~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
+-|=-|||.-.+..-. -.-..+.+++-.+.+|-.++..+.+.. -...-.++.+.+|+++..|-|--..-+
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~-l~i~i~~~~a~eIA~rSRGTPRIAnRL 223 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI-LGIEIDEEAALEIARRSRGTPRIANRL 223 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH-hCCCCChHHHHHHHHhccCCcHHHHHH
Confidence 1133477764432210 012346778889999999999887741 112223567889999999999644433
No 147
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.55 E-value=0.0006 Score=74.19 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=33.3
Q ss_pred cchhhHHHHHHHHHH---HHh------------CCCceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 159 EAFDSRMKLFQDVVE---ALR------------NDKLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~---~L~------------~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..++|.+..++.+.+ |.. .+....+.++|++|+||||+|+.+++...
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 356777666655543 332 12345678999999999999999998764
No 148
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.54 E-value=1e-05 Score=98.07 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=65.3
Q ss_pred cCCccEEEEecCCCccccccHHHHhhcccccEEEEecc-cccccccccCCCCCCccccccccccCCCCCCCccCccccce
Q 038494 845 FSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASC-NKLEMTVGPDREKPTTSLGFNEIIADDDTAPKVGIPSSLVN 923 (1209)
Q Consensus 845 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~sL~~ 923 (1209)
+|.|+.|.+..|..+............+.|++|++++| ......... .......+++|+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------------~~~~~~~~~~L~~ 247 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL-------------------LLLLLSICRKLKS 247 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH-------------------hhhhhhhcCCcCc
Confidence 56666666666665555332334555666666666653 111100000 0001123355666
Q ss_pred EeeccccchhhhhccccccccccccccccchhhhhccCCcccccccccccccCCCcceEeeccCCCcc
Q 038494 924 LKVSKCQKIEEIVGHVGEEVKENRIAFSELKVLILNYLSRLTSFCLENYTLEFPSLERVSMIRCPNMK 991 (1209)
Q Consensus 924 L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~ 991 (1209)
|+++.|..++..... .....+|+|+.|.+.+|..+++.........+++|+.|+++.|..++
T Consensus 248 l~l~~~~~isd~~l~------~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 248 LDLSGCGLVTDIGLS------ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred cchhhhhccCchhHH------HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 666666544322110 01123678888888878876665555555567888888888887764
No 149
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.50 E-value=2e-05 Score=95.54 Aligned_cols=121 Identities=20% Similarity=0.175 Sum_probs=55.8
Q ss_pred hcccceeeeccccccccccccccCCCCccCCcEEEEecc-cCceeeeccCCccccccCCcccEEecccccccchhccccc
Q 038494 761 LKLTEDIRLEELTGVQNVVHELDDGEGFPRLKHLWVERC-SEILHIVGSVGRVHRKVFPLLESLSLYKLINLEAICHSQL 839 (1209)
Q Consensus 761 ~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 839 (1209)
.+.++.+.+..+....... ........++|+.|++.+| ..... ...........+++|+.|++..|..+++.....+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDS-LDALALKCPNLEELDLSGCCLLITL-SPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhh-HHHHHhhCchhheecccCccccccc-chhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 4555555555554443311 0011344666777766653 21110 0000011223345666666666554444322222
Q ss_pred ccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEeccccc
Q 038494 840 REDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNKL 885 (1209)
Q Consensus 840 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 885 (1209)
. ..+|+|+.|.+.+|..++........+.+++|++|+++.|..+
T Consensus 265 ~--~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 A--SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred H--hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 1 1255666666666655554444444455566666666655443
No 150
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.50 E-value=0.001 Score=72.91 Aligned_cols=132 Identities=14% Similarity=0.158 Sum_probs=70.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCe
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKR 261 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~ 261 (1209)
-+.++|.+|+|||++|+.+++...........-|+.++. .++... ..+.. ......+.+.. ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~~~---~~g~~-------~~~~~~~~~~a---~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLVGQ---YIGHT-------APKTKEILKRA---MG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHhHh---hcccc-------hHHHHHHHHHc---cC
Confidence 578999999999999999887765432222112444432 122111 11111 12223333333 23
Q ss_pred EEEEEeCCCccc------C-----ccccCCCCCCCCccccccccCCcEEEEeccchhhhcc-c------CCcceEEEcCC
Q 038494 262 VLIILDNIWKKL------G-----LEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLLTN-D------MNSQKIFLIEV 323 (1209)
Q Consensus 262 ~LlvlDdv~~~~------~-----~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~-~------~~~~~~~~l~~ 323 (1209)
-+|++|++.... . ++.+...+.... .+.+||+++.....-.. . ......+++++
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~--------~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~ 194 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR--------DDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPD 194 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC--------CCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCC
Confidence 688999997431 1 112222221111 35566666643221100 0 01235799999
Q ss_pred CCHHHHHHHHHHHhC
Q 038494 324 LSKEEALQFFEKIVG 338 (1209)
Q Consensus 324 L~~~e~~~lf~~~~~ 338 (1209)
++.+|-.+++...+.
T Consensus 195 l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 195 YSEAELLVIAGLMLK 209 (284)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999988764
No 151
>CHL00181 cbbX CbbX; Provisional
Probab=97.49 E-value=0.0013 Score=71.98 Aligned_cols=133 Identities=14% Similarity=0.150 Sum_probs=70.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCC
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEK 260 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 260 (1209)
..+.++|.+|+||||+|+.+++.......-...-|+.++. .++.... .+.. ......+.+.. .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~~---~g~~-------~~~~~~~l~~a---~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQY---IGHT-------APKTKEVLKKA---M 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHHH---hccc-------hHHHHHHHHHc---c
Confidence 3578999999999999999998764322111112444442 1222211 1110 11222333322 2
Q ss_pred eEEEEEeCCCccc------Cc-----cccCCCCCCCCccccccccCCcEEEEeccchhhhc-------ccCCcceEEEcC
Q 038494 261 RVLIILDNIWKKL------GL-----EEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLLT-------NDMNSQKIFLIE 322 (1209)
Q Consensus 261 ~~LlvlDdv~~~~------~~-----~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~-------~~~~~~~~~~l~ 322 (1209)
.-+|++|++.... .+ +.+........ .+.+||+++....... ........+.++
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~--------~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~ 194 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR--------DDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFP 194 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC--------CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcC
Confidence 3589999997531 01 11111111111 3456666665432210 001234579999
Q ss_pred CCCHHHHHHHHHHHhC
Q 038494 323 VLSKEEALQFFEKIVG 338 (1209)
Q Consensus 323 ~L~~~e~~~lf~~~~~ 338 (1209)
+++.+|..+++...+.
T Consensus 195 ~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 195 DYTPEELLQIAKIMLE 210 (287)
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999888774
No 152
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.48 E-value=0.00074 Score=78.81 Aligned_cols=160 Identities=21% Similarity=0.227 Sum_probs=94.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCC
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEK 260 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 260 (1209)
..+.|+|..|+|||+|++.+++....+..-..+++++.. ++...+...+... ......+.+. +
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~---------~~~~~~~~~~--~ 199 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE------KFTNDFVNALRNN---------KMEEFKEKYR--S 199 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH------HHHHHHHHHHHcC---------CHHHHHHHHH--h
Confidence 568899999999999999999988654212356677543 3344444444321 1223344443 2
Q ss_pred eEEEEEeCCCcccCc----cccCCCCCCCCccccccccCCcEEEEeccchhhh-c-------ccCCcceEEEcCCCCHHH
Q 038494 261 RVLIILDNIWKKLGL----EEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLL-T-------NDMNSQKIFLIEVLSKEE 328 (1209)
Q Consensus 261 ~~LlvlDdv~~~~~~----~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~-~-------~~~~~~~~~~l~~L~~~e 328 (1209)
.-+||+||++..... +.+...+... ...+..+|+|+....-. . ..+.....+.+++.+.++
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~-------~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~ 272 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNAL-------HENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLET 272 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHH-------HHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHH
Confidence 348999999865221 1121111100 01355688887653211 0 012233578999999999
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHH
Q 038494 329 ALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALS 365 (1209)
Q Consensus 329 ~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 365 (1209)
-..++.+.+.... ..-.+++...|++.+.|..-.+.
T Consensus 273 r~~il~~~~~~~~-~~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 273 RLAILQKKAEEEG-LELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCHHHHH
Confidence 9999999886322 22235777888888888765443
No 153
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.48 E-value=0.004 Score=74.58 Aligned_cols=183 Identities=13% Similarity=0.168 Sum_probs=100.0
Q ss_pred ccccchhhHHHHHHHHHHHHh---C---------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcC
Q 038494 156 KDFEAFDSRMKLFQDVVEALR---N---------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPD 223 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~ 223 (1209)
....+++|-++.++++.+++. . ...+-+.++|++|+|||++|+.+++..... ++.++.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------~~~i~~--- 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISG--- 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------eeeccH---
Confidence 345678887776666555433 1 123458899999999999999999875432 222221
Q ss_pred HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCcc----------------ccCCCCCCCCc
Q 038494 224 VQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLE----------------EIGIPFGDVDE 287 (1209)
Q Consensus 224 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~----------------~l~~~~~~~~~ 287 (1209)
.++.... .+. ....++.+.+......+.+|++||++....-. .+...+..
T Consensus 122 -~~~~~~~---~g~-------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~--- 187 (495)
T TIGR01241 122 -SDFVEMF---VGV-------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG--- 187 (495)
T ss_pred -HHHHHHH---hcc-------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcc---
Confidence 1111110 110 13344555555554577999999997642100 00000000
Q ss_pred cccccccCCcEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCC-hh
Q 038494 288 KDRKQDLRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGL-PV 362 (1209)
Q Consensus 288 ~~~~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-PL 362 (1209)
.....+-.||.||.......... .-...+.++..+.++-.++|..+.......+ ......+++.+.|. +-
T Consensus 188 ---~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~--~~~l~~la~~t~G~sga 262 (495)
T TIGR01241 188 ---FGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP--DVDLKAVARRTPGFSGA 262 (495)
T ss_pred ---ccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc--chhHHHHHHhCCCCCHH
Confidence 00113445666665543221111 2346788999999999999988875332211 12244788888774 44
Q ss_pred HHHHH
Q 038494 363 ALSTV 367 (1209)
Q Consensus 363 ai~~~ 367 (1209)
.|..+
T Consensus 263 dl~~l 267 (495)
T TIGR01241 263 DLANL 267 (495)
T ss_pred HHHHH
Confidence 44443
No 154
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.46 E-value=0.0037 Score=64.53 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=42.9
Q ss_pred ccccccchhhHHHHHHHHHHHHh----CCCceEEEEEcCCCChHHHHHHHHHHHHhhc
Q 038494 154 QAKDFEAFDSRMKLFQDVVEALR----NDKLNIIGVHGMGGVGKTTLVKQIAKQVMED 207 (1209)
Q Consensus 154 ~~~~~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~ 207 (1209)
.+.....++|-+..++.|++-.. .....-+.+||..|+|||++++.+.+....+
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 34457789999999888887543 3445677899999999999999999988764
No 155
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.43 E-value=0.00093 Score=78.98 Aligned_cols=161 Identities=19% Similarity=0.189 Sum_probs=96.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcC
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKE 259 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 259 (1209)
...+.|+|.+|+|||+|++.+++....+..-..+++++... +...+...+... ......+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~------~~~~~~~~~~~~---------~~~~~~~~~~-- 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK------FTNDFVNALRNN---------TMEEFKEKYR-- 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH------HHHHHHHHHHcC---------cHHHHHHHHh--
Confidence 35689999999999999999999987542223566666532 333333333211 1233444454
Q ss_pred CeEEEEEeCCCcccC---c-cccCCCCCCCCccccccccCCcEEEEeccchhhh--------cccCCcceEEEcCCCCHH
Q 038494 260 KRVLIILDNIWKKLG---L-EEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLL--------TNDMNSQKIFLIEVLSKE 327 (1209)
Q Consensus 260 k~~LlvlDdv~~~~~---~-~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~~ 327 (1209)
+.-+||+||++.... + +.+...+.... ..|..+|+||....-. ........++++++.+.+
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~-------~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~ 283 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALH-------EAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLE 283 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHH-------HCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHH
Confidence 345899999976421 1 12211111000 1345688887653211 111233468999999999
Q ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHH
Q 038494 328 EALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALS 365 (1209)
Q Consensus 328 e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 365 (1209)
+-..++.+.+.... ..-.+++...|++.++|..-.+.
T Consensus 284 ~r~~il~~~~~~~~-~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 284 TRIAILKKKAEEEG-IDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHHcCcCCCHHHHH
Confidence 99999999876321 22235678889998888766443
No 156
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.43 E-value=0.0009 Score=84.68 Aligned_cols=158 Identities=15% Similarity=0.178 Sum_probs=92.2
Q ss_pred cccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccC----C-EEEEEEcCCCcCHHHHHHHH
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVF----D-KVVMAEVTENPDVQKIQDKL 231 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f----~-~~~wv~~s~~~~~~~l~~~i 231 (1209)
....++||+.++.++++.|......-+.++|.+|+|||++|+.++......... + .++++.++.- ..
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------~a-- 247 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------VA-- 247 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------hh--
Confidence 356789999999999999987666678899999999999999999887532111 2 2333333321 00
Q ss_pred HHHhCCCCCCCCChHHHHHHHHHHHh-cCCeEEEEEeCCCcccC---------ccccCCCCCCCCccccccccCCcEEEE
Q 038494 232 ASDLDLNFDLNDSKPHRAKQLCQRLT-KEKRVLIILDNIWKKLG---------LEEIGIPFGDVDEKDRKQDLRRRTIIL 301 (1209)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlvlDdv~~~~~---------~~~l~~~~~~~~~~~~~~~~~~s~ilv 301 (1209)
. .... ...++.+..+.+.+. .+++.+|++|++..... ...+..+.... ..-++|-
T Consensus 248 --g---~~~~-g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~---------g~l~~Ig 312 (857)
T PRK10865 248 --G---AKYR-GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR---------GELHCVG 312 (857)
T ss_pred --c---cchh-hhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc---------CCCeEEE
Confidence 0 0000 111344555555543 24679999999986521 11111111111 2345666
Q ss_pred eccchhhh------cccCCcceEEEcCCCCHHHHHHHHHHHh
Q 038494 302 TSRSKHLL------TNDMNSQKIFLIEVLSKEEALQFFEKIV 337 (1209)
Q Consensus 302 TtR~~~v~------~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 337 (1209)
+|...+.. .........+.+..-+.++...++....
T Consensus 313 aTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred cCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 55544321 0011233456677778888888886554
No 157
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.42 E-value=9.4e-05 Score=90.12 Aligned_cols=126 Identities=22% Similarity=0.271 Sum_probs=76.3
Q ss_pred hcCCeEEEEccCCCC--ccCCC--cCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCC
Q 038494 517 IQKGAIAISIPYGDI--QELPE--RLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINL 592 (1209)
Q Consensus 517 ~~~~~r~l~l~~~~~--~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L 592 (1209)
...+++++.+.+... ...+. ..-+|.|++|.+.+-.....+ -...+.++++|+.||+|+++++.+ ..+++|+||
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNL 197 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence 345778888876422 11111 125788888888763211111 123456778888888888888877 557788888
Q ss_pred cEEeccCcccCC---cccccCCCCCCEEEccCCCCCccchh-------ccCCCCCCEEeccC
Q 038494 593 QTLCLDWCQLED---VAAIGQLKKLEILSFRYSDIKQLPLE-------IGQLAQLQLLDLSN 644 (1209)
Q Consensus 593 ~~L~l~~~~l~~---l~~i~~L~~L~~L~l~~~~~~~lp~~-------i~~L~~L~~L~l~~ 644 (1209)
++|.+.+=.+.. +..+.+|++|++||+|......-+.- -..|++|+.||.++
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 888877766543 25677788888888877543322211 12355666666554
No 158
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=9.4e-05 Score=90.12 Aligned_cols=132 Identities=19% Similarity=0.189 Sum_probs=100.5
Q ss_pred CCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccc--cccccccCCCCCcEEeccCcccCCcccccCCCCCCEE
Q 038494 540 CPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFS--SLSSSLGHLINLQTLCLDWCQLEDVAAIGQLKKLEIL 617 (1209)
Q Consensus 540 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~--~lp~~i~~l~~L~~L~l~~~~l~~l~~i~~L~~L~~L 617 (1209)
-.+|++|++.+.......++..+-..++.||.|.+++-.+. ++..-..+++||+.||++++.++.+.++++|++|+.|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 46899999988765566677777778999999999997764 3445567899999999999999999999999999999
Q ss_pred EccCCCCCccc--hhccCCCCCCEEeccCCCCCccc--Cc---hhhcCCCCCcEEECCCCC
Q 038494 618 SFRYSDIKQLP--LEIGQLAQLQLLDLSNCSSLVVI--AP---NVISKFSRLEELYMGDSF 671 (1209)
Q Consensus 618 ~l~~~~~~~lp--~~i~~L~~L~~L~l~~~~~l~~~--~~---~~l~~L~~L~~L~l~~~~ 671 (1209)
.+++-.+..-+ ..+-+|++|++||++........ .. +.-..|++|+.|+.+++.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 99876665432 35678999999999973332221 10 111348999999998754
No 159
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.41 E-value=0.0012 Score=77.23 Aligned_cols=163 Identities=15% Similarity=0.214 Sum_probs=96.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcC
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKE 259 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 259 (1209)
...+.|+|.+|+|||+|++.+++.......-..++|++. .++...+...+... ......+.+. .
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~---------~~~~f~~~~~-~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG---------KLNEFREKYR-K 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc---------cHHHHHHHHH-h
Confidence 346899999999999999999998765321135677765 34555555554321 1122333333 2
Q ss_pred CeEEEEEeCCCcccC---c-cccCCCCCCCCccccccccCCcEEEEeccch-hhh----cc---cCCcceEEEcCCCCHH
Q 038494 260 KRVLIILDNIWKKLG---L-EEIGIPFGDVDEKDRKQDLRRRTIILTSRSK-HLL----TN---DMNSQKIFLIEVLSKE 327 (1209)
Q Consensus 260 k~~LlvlDdv~~~~~---~-~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~v~----~~---~~~~~~~~~l~~L~~~ 327 (1209)
+.-+|++||++.... + +.+...+.... ..|..||+||... .-. .. ......++++++.+.+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~-------~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e 266 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELH-------DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEE 266 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHH-------HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHH
Confidence 456899999985421 1 11211111100 1355788888532 111 10 1233457899999999
Q ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHH
Q 038494 328 EALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALST 366 (1209)
Q Consensus 328 e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 366 (1209)
.-..++.+.+.... -.--++++..|++.+.|.--.+.-
T Consensus 267 ~r~~IL~~~~~~~~-~~l~~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 267 TRKKIARKMLEIEH-GELPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HHHHHHHHHHHhcC-CCCCHHHHHHHHhccccCHHHHHH
Confidence 99999998875321 112356788888888876544433
No 160
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.41 E-value=0.0018 Score=82.38 Aligned_cols=158 Identities=15% Similarity=0.204 Sum_probs=93.2
Q ss_pred cccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccC----CE-EEEEEcCCCcCHHHHHHHH
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVF----DK-VVMAEVTENPDVQKIQDKL 231 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f----~~-~~wv~~s~~~~~~~l~~~i 231 (1209)
....++||+.++.++++.|.......+.++|.+|+|||++|..++++......+ +. ++.+.++ .+.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l~--- 241 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------ALI--- 241 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HHh---
Confidence 345789999999999999987666677799999999999999999887532111 22 2233221 111
Q ss_pred HHHhCCCCCCCCChHHHHHHHHHHHhc-CCeEEEEEeCCCcccC---------ccccCCCCCCCCccccccccCCcEEEE
Q 038494 232 ASDLDLNFDLNDSKPHRAKQLCQRLTK-EKRVLIILDNIWKKLG---------LEEIGIPFGDVDEKDRKQDLRRRTIIL 301 (1209)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~~---------~~~l~~~~~~~~~~~~~~~~~~s~ilv 301 (1209)
. + ... ....+..+..+.+.+.. +++.+|++|++..... ...+..+.... ..-++|-
T Consensus 242 -a--~-~~~-~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~---------g~i~~Ig 307 (852)
T TIGR03346 242 -A--G-AKY-RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR---------GELHCIG 307 (852)
T ss_pred -h--c-chh-hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc---------CceEEEE
Confidence 0 0 000 01114455566666642 4689999999986521 01111111110 2344555
Q ss_pred eccchhhh------cccCCcceEEEcCCCCHHHHHHHHHHHh
Q 038494 302 TSRSKHLL------TNDMNSQKIFLIEVLSKEEALQFFEKIV 337 (1209)
Q Consensus 302 TtR~~~v~------~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 337 (1209)
+|...+.- .........+.++..+.++...++....
T Consensus 308 aTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred eCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 55543321 0011234568899999999999887654
No 161
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.0046 Score=68.16 Aligned_cols=173 Identities=16% Similarity=0.169 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhCCCce-EEEEEcCCCChHHHHHHHHHHHHhhcc-----------------cCCEEEEEEcCCCcCHHHH
Q 038494 166 KLFQDVVEALRNDKLN-IIGVHGMGGVGKTTLVKQIAKQVMEDK-----------------VFDKVVMAEVTENPDVQKI 227 (1209)
Q Consensus 166 ~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~-----------------~f~~~~wv~~s~~~~~~~l 227 (1209)
...+.+...+..++.+ .+.++|+.|+||+++|..+++..-.+. |.| ..|+.......
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~---- 85 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRT---- 85 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcc----
Confidence 3456677777666554 688999999999999999998764322 111 22221100000
Q ss_pred HHHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEE
Q 038494 228 QDKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIIL 301 (1209)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilv 301 (1209)
+. ........+.++.+.+.+. .+++-++|+|+++... .-..+...+-.-. .++.+|+
T Consensus 86 --------~~-k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp--------~~~~fiL 148 (319)
T PRK08769 86 --------GD-KLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPS--------PGRYLWL 148 (319)
T ss_pred --------cc-cccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCC--------CCCeEEE
Confidence 00 0000112556666666554 2466799999998763 2233322222211 4666666
Q ss_pred eccc-hhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 302 TSRS-KHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 302 TtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
+|.. ..+..+.......+.+.+++.+++.+.+... + . .+..+..++..++|.|+....+
T Consensus 149 ~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~--~----~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 149 ISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-G--V----SERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred EECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-C--C----ChHHHHHHHHHcCCCHHHHHHH
Confidence 6654 4444444456778999999999999888753 1 1 1234668899999999866443
No 162
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.37 E-value=0.00025 Score=52.25 Aligned_cols=37 Identities=30% Similarity=0.453 Sum_probs=17.0
Q ss_pred CCcEEeccCcccCCccc-ccCCCCCCEEEccCCCCCcc
Q 038494 591 NLQTLCLDWCQLEDVAA-IGQLKKLEILSFRYSDIKQL 627 (1209)
Q Consensus 591 ~L~~L~l~~~~l~~l~~-i~~L~~L~~L~l~~~~~~~l 627 (1209)
+|++|++++|.++.++. +++|++|++|++++|.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 44555555555554422 55555555555555544433
No 163
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.36 E-value=3.7e-05 Score=81.31 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=18.6
Q ss_pred ccCCCCCCEEEccCCCCC-----ccchhccCCCCCCEEeccCC
Q 038494 608 IGQLKKLEILSFRYSDIK-----QLPLEIGQLAQLQLLDLSNC 645 (1209)
Q Consensus 608 i~~L~~L~~L~l~~~~~~-----~lp~~i~~L~~L~~L~l~~~ 645 (1209)
+-..++|++||||.|-+. .+-.-+..++.|++|.+.+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence 334445555555555332 11122445566666666654
No 164
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.35 E-value=0.0002 Score=88.15 Aligned_cols=158 Identities=17% Similarity=0.223 Sum_probs=93.4
Q ss_pred ccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcc-c---CCEEEEEEcCCCcCHHHHHHHHHH
Q 038494 158 FEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDK-V---FDKVVMAEVTENPDVQKIQDKLAS 233 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~-~---f~~~~wv~~s~~~~~~~l~~~i~~ 233 (1209)
...++||++++.++++.|......-+.++|.+|+|||++|+.+++...... . .++.+|.. +...+ ..
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc
Confidence 456899999999999998875556667999999999999999998764322 1 13444421 11111 10
Q ss_pred HhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC----------ccccCCCCCCCCccccccccCCcEEEEec
Q 038494 234 DLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLG----------LEEIGIPFGDVDEKDRKQDLRRRTIILTS 303 (1209)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~----------~~~l~~~~~~~~~~~~~~~~~~s~ilvTt 303 (1209)
+ ... ....+.....+.+.+.+.++.+|++|+++.... ...+..++.. ...-++|-+|
T Consensus 256 --G-~~~-~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~---------~g~i~vIgAT 322 (758)
T PRK11034 256 --G-TKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS---------SGKIRVIGST 322 (758)
T ss_pred --c-cch-hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh---------CCCeEEEecC
Confidence 0 000 011144555666666545678999999975411 0001111110 1234455555
Q ss_pred cchhhhc------ccCCcceEEEcCCCCHHHHHHHHHHHh
Q 038494 304 RSKHLLT------NDMNSQKIFLIEVLSKEEALQFFEKIV 337 (1209)
Q Consensus 304 R~~~v~~------~~~~~~~~~~l~~L~~~e~~~lf~~~~ 337 (1209)
...+... ........+.+++.+.+++..++....
T Consensus 323 t~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred ChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 4433210 011244689999999999999998654
No 165
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.0028 Score=71.19 Aligned_cols=163 Identities=13% Similarity=0.139 Sum_probs=91.0
Q ss_pred cchhh-HHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhC
Q 038494 159 EAFDS-RMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLD 236 (1209)
Q Consensus 159 ~~~~g-R~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 236 (1209)
..++| .+..++.+.+.+..++. ....++|+.|+||||+|+.+++..-.....+.. .+.. -..-+.+...-.
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~----C~~c~~~~~~~h 77 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGT----CTNCKRIDSGNH 77 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCc----CHHHHHHhcCCC
Confidence 34566 77777888888876655 456899999999999999999886432211100 0000 000000000000
Q ss_pred CC-----CCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccc
Q 038494 237 LN-----FDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRS 305 (1209)
Q Consensus 237 ~~-----~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~ 305 (1209)
.+ ........+.++.+.+.+. .+.+-++|+|+++... ..+.+...+-... .++.+|++|.+
T Consensus 78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp--------~~~~~Il~t~~ 149 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPS--------GGTTAILLTEN 149 (329)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCC--------CCceEEEEeCC
Confidence 00 0000111344555555443 2455689999987663 2333333332222 56666766655
Q ss_pred h-hhhcccCCcceEEEcCCCCHHHHHHHHHHH
Q 038494 306 K-HLLTNDMNSQKIFLIEVLSKEEALQFFEKI 336 (1209)
Q Consensus 306 ~-~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~ 336 (1209)
. .+..........+++.+++.++..+.+.+.
T Consensus 150 ~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 150 KHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred hHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 4 333333456688999999999998888653
No 166
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.32 E-value=0.011 Score=74.63 Aligned_cols=48 Identities=35% Similarity=0.350 Sum_probs=38.6
Q ss_pred cchhhHHHHHHHHHHHHh------CCCceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 159 EAFDSRMKLFQDVVEALR------NDKLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
..++|.++.++.+.+++. ..+.+++.++|++|+|||++|+.+++....
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~ 373 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR 373 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 346788888888888764 123468999999999999999999998753
No 167
>PRK06620 hypothetical protein; Validated
Probab=97.31 E-value=0.00062 Score=70.98 Aligned_cols=137 Identities=15% Similarity=0.068 Sum_probs=79.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCC
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEK 260 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 260 (1209)
+.+.|+|++|+|||+|++.+++.... .++. ..+. . . +.+. .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~--------------------~-~-------~~~~--~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFF--------------------N-E-------EILE--K 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhh--------------------c-h-------hHHh--c
Confidence 56899999999999999987665431 1211 0000 0 0 0111 2
Q ss_pred eEEEEEeCCCcccCccccCCCCCCCCccccccccCCcEEEEeccchhhhc------ccCCcceEEEcCCCCHHHHHHHHH
Q 038494 261 RVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLLT------NDMNSQKIFLIEVLSKEEALQFFE 334 (1209)
Q Consensus 261 ~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~------~~~~~~~~~~l~~L~~~e~~~lf~ 334 (1209)
.-++++||++...+ ..+...+... ...|..+|+|++.....- ..+...-+++++++++++-..++.
T Consensus 86 ~d~lliDdi~~~~~-~~lf~l~N~~-------~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~ 157 (214)
T PRK06620 86 YNAFIIEDIENWQE-PALLHIFNII-------NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIF 157 (214)
T ss_pred CCEEEEeccccchH-HHHHHHHHHH-------HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHH
Confidence 35788999974321 1111111100 015778999998654310 012234589999999999888888
Q ss_pred HHhCCCCCCCcchHHHHHHHHHhCCChhHHH
Q 038494 335 KIVGNSAKASAFQPLADEIVGKCGGLPVALS 365 (1209)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 365 (1209)
+.+.... -.--++++.-|++.+.|---.+.
T Consensus 158 k~~~~~~-l~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 158 KHFSISS-VTISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred HHHHHcC-CCCCHHHHHHHHHHccCCHHHHH
Confidence 8765321 12235677778887776544443
No 168
>PRK08181 transposase; Validated
Probab=97.31 E-value=0.0025 Score=68.58 Aligned_cols=82 Identities=21% Similarity=0.178 Sum_probs=51.2
Q ss_pred HHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHH
Q 038494 170 DVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRA 249 (1209)
Q Consensus 170 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~ 249 (1209)
...+|+.. ..-+.++|++|+|||.||..+++....+ ...++|+++ .++...+..... ....
T Consensus 98 ~~~~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~------~~L~~~l~~a~~---------~~~~ 158 (269)
T PRK08181 98 AGDSWLAK--GANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRT------TDLVQKLQVARR---------ELQL 158 (269)
T ss_pred HHHHHHhc--CceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeH------HHHHHHHHHHHh---------CCcH
Confidence 33356543 3468999999999999999999877643 234566654 445555543321 0112
Q ss_pred HHHHHHHhcCCeEEEEEeCCCcc
Q 038494 250 KQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 250 ~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
....+.+. +.-|||+||+...
T Consensus 159 ~~~l~~l~--~~dLLIIDDlg~~ 179 (269)
T PRK08181 159 ESAIAKLD--KFDLLILDDLAYV 179 (269)
T ss_pred HHHHHHHh--cCCEEEEeccccc
Confidence 23444553 4469999999654
No 169
>CHL00176 ftsH cell division protein; Validated
Probab=97.31 E-value=0.0034 Score=76.06 Aligned_cols=173 Identities=14% Similarity=0.194 Sum_probs=95.5
Q ss_pred ccchhhHHHHHHHHHH---HHhCC---------CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHH
Q 038494 158 FEAFDSRMKLFQDVVE---ALRND---------KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQ 225 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~---~L~~~---------~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~ 225 (1209)
..++.|.++.++++.+ ++.+. ..+-|.++|++|+|||++|+.++...... |+.++..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~s---- 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISGS---- 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccHH----
Confidence 4456676655555444 44322 13468899999999999999998876431 2333211
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC----------------ccccCCCCCCCCccc
Q 038494 226 KIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLG----------------LEEIGIPFGDVDEKD 289 (1209)
Q Consensus 226 ~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~----------------~~~l~~~~~~~~~~~ 289 (1209)
++.... .+. ....++.+.+......+++|++||++.... +..+.......
T Consensus 251 ~f~~~~---~g~-------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~---- 316 (638)
T CHL00176 251 EFVEMF---VGV-------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGF---- 316 (638)
T ss_pred HHHHHh---hhh-------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccc----
Confidence 111100 010 123344455555556889999999975411 01111000000
Q ss_pred cccccCCcEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCC
Q 038494 290 RKQDLRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGG 359 (1209)
Q Consensus 290 ~~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g 359 (1209)
....+-.||.||...+.....+ .-...+.++..+.++-.++++.++...... .......+++.+.|
T Consensus 317 --~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~--~d~~l~~lA~~t~G 386 (638)
T CHL00176 317 --KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS--PDVSLELIARRTPG 386 (638)
T ss_pred --cCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc--hhHHHHHHHhcCCC
Confidence 0113556666776644332111 223678888899999999999887642211 12345677777777
No 170
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.31 E-value=0.016 Score=59.69 Aligned_cols=190 Identities=18% Similarity=0.235 Sum_probs=109.5
Q ss_pred HHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEc-CCCcCHHHHHHHHHHHhCCCCCCCCC--
Q 038494 168 FQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEV-TENPDVQKIQDKLASDLDLNFDLNDS-- 244 (1209)
Q Consensus 168 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~-s~~~~~~~l~~~i~~~l~~~~~~~~~-- 244 (1209)
+..+...+ .++..++.++|.-|.|||.+++........+ .++=+.+ .+..+...+...|...+..+......
T Consensus 40 l~~l~~~i-~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~ 114 (269)
T COG3267 40 LLMLHAAI-ADGQGILAVTGEVGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAV 114 (269)
T ss_pred HHHHHHHH-hcCCceEEEEecCCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHhccCccchhHHH
Confidence 33343333 3455699999999999999999555544422 1222333 34557788888888888763222211
Q ss_pred hHHHHHHHHHHHhcCCe-EEEEEeCCCccc--CccccCC---CCCCCCccccccccCCcEEEEec---cch---hhhccc
Q 038494 245 KPHRAKQLCQRLTKEKR-VLIILDNIWKKL--GLEEIGI---PFGDVDEKDRKQDLRRRTIILTS---RSK---HLLTND 312 (1209)
Q Consensus 245 ~~~~~~~l~~~l~~~k~-~LlvlDdv~~~~--~~~~l~~---~~~~~~~~~~~~~~~~s~ilvTt---R~~---~v~~~~ 312 (1209)
.....+.+....++++| ..+++||..... ..+.+.. .-.+.. ..-+.+++-= +.+ .+....
T Consensus 115 ~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~-------~~l~ivL~Gqp~L~~~lr~~~l~e~ 187 (269)
T COG3267 115 LEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSS-------KLLSIVLIGQPKLRPRLRLPVLREL 187 (269)
T ss_pred HHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhccccc-------CceeeeecCCcccchhhchHHHHhh
Confidence 12233345555556777 999999988662 2332211 111111 0111222211 110 011111
Q ss_pred CCcceE-EEcCCCCHHHHHHHHHHHhCCCCC--CCcchHHHHHHHHHhCCChhHHHHHHH
Q 038494 313 MNSQKI-FLIEVLSKEEALQFFEKIVGNSAK--ASAFQPLADEIVGKCGGLPVALSTVAN 369 (1209)
Q Consensus 313 ~~~~~~-~~l~~L~~~e~~~lf~~~~~~~~~--~~~~~~~~~~i~~~~~glPLai~~~~~ 369 (1209)
...... |.+.|++.++...++..+...... +--..+....|.....|.|.+|..++.
T Consensus 188 ~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 188 EQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred hheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 122234 999999999999999988763322 222355677899999999999988764
No 171
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.29 E-value=0.0025 Score=75.39 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=94.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCC
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEK 260 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 260 (1209)
..+.|+|..|+|||.|++.+++.......-..+++++. .++...+...+.. .......+++. +
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~---------~~~~~f~~~y~--~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRD---------GKGDSFRRRYR--E 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHh---------ccHHHHHHHhh--c
Confidence 46899999999999999999998764221234566654 3344444433321 11223344443 3
Q ss_pred eEEEEEeCCCccc---Ccc-ccCCCCCCCCccccccccCCcEEEEeccchh--hh------cccCCcceEEEcCCCCHHH
Q 038494 261 RVLIILDNIWKKL---GLE-EIGIPFGDVDEKDRKQDLRRRTIILTSRSKH--LL------TNDMNSQKIFLIEVLSKEE 328 (1209)
Q Consensus 261 ~~LlvlDdv~~~~---~~~-~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~--v~------~~~~~~~~~~~l~~L~~~e 328 (1209)
.=+||+||++... .|+ .+...+.... ..|..|||||+... .. ...+...-++++++.+.+.
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~-------e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~Et 450 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLH-------NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELET 450 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHH-------hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHH
Confidence 4588999998652 122 1211111111 14567889887632 10 1112345688999999999
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHH
Q 038494 329 ALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVAL 364 (1209)
Q Consensus 329 ~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 364 (1209)
-.+++.+++.... ..--++++.-|++.+.+..-.|
T Consensus 451 R~aIL~kka~~r~-l~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 451 RIAILRKKAVQEQ-LNAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHHHHHHhcC-CCCCHHHHHHHHHhccCCHHHH
Confidence 9999998876332 1223567777777776654433
No 172
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.0063 Score=67.20 Aligned_cols=176 Identities=10% Similarity=0.131 Sum_probs=102.2
Q ss_pred HHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCC------CC
Q 038494 168 FQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLN------FD 240 (1209)
Q Consensus 168 ~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~------~~ 240 (1209)
.+.+...+..+.. ..+.+.|+.|+||+++|..++...-....... ...+.-..-+.+...-..+ ..
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHILEPID 83 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEcccc
Confidence 4566666665543 57779999999999999999987754221110 0000001111111110000 00
Q ss_pred CCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccch-hhhcccC
Q 038494 241 LNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSK-HLLTNDM 313 (1209)
Q Consensus 241 ~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~v~~~~~ 313 (1209)
......+.++.+.+.+. .+++-++|+|+++... ....+...+-... .+..+|++|.+. .+..+..
T Consensus 84 ~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp--------~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 84 NKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPR--------PNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCC--------CCeEEEEEECChHhCchHHH
Confidence 11122566666666664 3566788999998763 3334433332222 456666666654 4444444
Q ss_pred CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHH
Q 038494 314 NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVAL 364 (1209)
Q Consensus 314 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 364 (1209)
.....+.+.+++.++..+.+...... ....+...++.++|.|+..
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~~~------~~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQSSA------EISEILTALRINYGRPLLA 200 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHhcc------ChHHHHHHHHHcCCCHHHH
Confidence 56779999999999999988876421 1223567788999999633
No 173
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.25 E-value=0.001 Score=79.72 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=43.5
Q ss_pred cccccccchhhHHHHHHHHHHHHhC-----CCceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 153 MQAKDFEAFDSRMKLFQDVVEALRN-----DKLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 153 ~~~~~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..|....+++|.++.++++..|+.. ...+++.|+|++|+||||+++.++....
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3455577899999999999999874 2345799999999999999999997764
No 174
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.23 E-value=9.1e-06 Score=93.10 Aligned_cols=122 Identities=25% Similarity=0.223 Sum_probs=82.8
Q ss_pred cCCeEEEEccCCCCccCCCcC-CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEE
Q 038494 518 QKGAIAISIPYGDIQELPERL-ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTL 595 (1209)
Q Consensus 518 ~~~~r~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L 595 (1209)
|..+..++.+.|.+..+.... -++.+++|++++|. ..... .+..+.+|+.|||++|.+..+|. +...++ |+.|
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk--~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK--FTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh--hhhhH--HHHhcccccccccccchhccccccchhhhh-heee
Confidence 444555666666655554444 36788888888874 33332 35678888888888888887775 333444 8888
Q ss_pred eccCcccCCcccccCCCCCCEEEccCCCCCccc--hhccCCCCCCEEeccC
Q 038494 596 CLDWCQLEDVAAIGQLKKLEILSFRYSDIKQLP--LEIGQLAQLQLLDLSN 644 (1209)
Q Consensus 596 ~l~~~~l~~l~~i~~L~~L~~L~l~~~~~~~lp--~~i~~L~~L~~L~l~~ 644 (1209)
.+++|.++.+.++.+|++|+.||+++|-+.... .-++.|..|+.|++.+
T Consensus 238 ~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 238 NLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred eecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence 888888888888888888888888887554221 1245667777788877
No 175
>PRK10536 hypothetical protein; Provisional
Probab=97.23 E-value=0.0043 Score=64.98 Aligned_cols=57 Identities=19% Similarity=0.280 Sum_probs=42.7
Q ss_pred ccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEE
Q 038494 158 FEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMA 216 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv 216 (1209)
...+.+|......+..++.+. ..|.++|.+|+|||+||..++.+.-....|..++-.
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~ 110 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVT 110 (262)
T ss_pred CccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEe
Confidence 445667888888888888764 499999999999999999999864322335554433
No 176
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.20 E-value=0.0034 Score=72.21 Aligned_cols=166 Identities=22% Similarity=0.238 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-CHHHHHHHHHHHhCCCCCC
Q 038494 163 SRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-DVQKIQDKLASDLDLNFDL 241 (1209)
Q Consensus 163 gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~~ 241 (1209)
.|...+.++.+.+..... ++.|+|+-++||||+++.+....... .+++...+.. +..++ .+
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l-~d----------- 82 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIEL-LD----------- 82 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhH-HH-----------
Confidence 455556666666654433 99999999999999996665554432 4555443321 11111 11
Q ss_pred CCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCccccccccCCcEEEEeccchhhh-----cccCCcc
Q 038494 242 NDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLL-----TNDMNSQ 316 (1209)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~-----~~~~~~~ 316 (1209)
....+...- ..++..|+||.|.....|+.....+.+.. +. +|++|+-+.... ....+..
T Consensus 83 ------~~~~~~~~~-~~~~~yifLDEIq~v~~W~~~lk~l~d~~--------~~-~v~itgsss~ll~~~~~~~L~GR~ 146 (398)
T COG1373 83 ------LLRAYIELK-EREKSYIFLDEIQNVPDWERALKYLYDRG--------NL-DVLITGSSSSLLSKEISESLAGRG 146 (398)
T ss_pred ------HHHHHHHhh-ccCCceEEEecccCchhHHHHHHHHHccc--------cc-eEEEECCchhhhccchhhhcCCCc
Confidence 111111111 12668999999999999988766665544 34 788887765433 2223566
Q ss_pred eEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 317 KIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 317 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
..+++.||+..|-..+-.. .......+. .-+-.-..||.|-++..-
T Consensus 147 ~~~~l~PlSF~Efl~~~~~----~~~~~~~~~-~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 147 KDLELYPLSFREFLKLKGE----EIEPSKLEL-LFEKYLETGGFPESVKAD 192 (398)
T ss_pred eeEEECCCCHHHHHhhccc----ccchhHHHH-HHHHHHHhCCCcHHHhCc
Confidence 7899999999987765320 000101111 222233568888776543
No 177
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.016 Score=63.97 Aligned_cols=164 Identities=11% Similarity=0.133 Sum_probs=100.7
Q ss_pred HHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcc-------------------cCCEEEEEEcCCCcCHHH
Q 038494 167 LFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDK-------------------VFDKVVMAEVTENPDVQK 226 (1209)
Q Consensus 167 ~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~s~~~~~~~ 226 (1209)
..+.+.+.+..++. ..+.++|+.|+||+++|..+++..-..+ |.| ..|+.-..
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~------ 83 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEK------ 83 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCc------
Confidence 34566666665554 5788999999999999999998764322 122 11221100
Q ss_pred HHHHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEE
Q 038494 227 IQDKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTII 300 (1209)
Q Consensus 227 l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~il 300 (1209)
....-..+.++.+.+.+. .+.+-++|+|+++... ....+...+-... .++.+|
T Consensus 84 -------------~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp--------~~t~fi 142 (319)
T PRK06090 84 -------------EGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPA--------PNCLFL 142 (319)
T ss_pred -------------CCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCC--------CCeEEE
Confidence 001112455555555553 2456789999998763 3444433332222 455555
Q ss_pred Eeccc-hhhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 301 LTSRS-KHLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 301 vTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
++|.+ ..+..+.......+.+.+++.+++.+.+..... + .+..+++.++|.|+....+
T Consensus 143 L~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~---~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 143 LVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGI---T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred EEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCC---c------hHHHHHHHcCCCHHHHHHH
Confidence 55554 455555456678999999999999998876421 1 2357789999999866544
No 178
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.19 E-value=0.0029 Score=73.65 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=89.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCC
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEK 260 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 260 (1209)
..+.|+|..|+|||+|++.+++..... ...+++++. ..+...+...+... ........+. .
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~---------~~~~f~~~~~--~ 202 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG---------EMQRFRQFYR--N 202 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc---------hHHHHHHHcc--c
Confidence 568899999999999999999988643 234556653 33444444444311 1122333332 3
Q ss_pred eEEEEEeCCCcccCc----cccCCCCCCCCccccccccCCcEEEEeccchhh-h----c---ccCCcceEEEcCCCCHHH
Q 038494 261 RVLIILDNIWKKLGL----EEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHL-L----T---NDMNSQKIFLIEVLSKEE 328 (1209)
Q Consensus 261 ~~LlvlDdv~~~~~~----~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v-~----~---~~~~~~~~~~l~~L~~~e 328 (1209)
.-+|++||+...... +.+...+... ...|..||+||..... . . ........+++.+++.++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l-------~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~ 275 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSL-------HTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEG 275 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHH-------HHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHH
Confidence 458899999765321 1111111100 0145678888865311 1 0 112334689999999999
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHHhCCCh
Q 038494 329 ALQFFEKIVGNSAKASAFQPLADEIVGKCGGLP 361 (1209)
Q Consensus 329 ~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 361 (1209)
-..++.+.+.... ..--+++..-|++.+.+.-
T Consensus 276 r~~iL~~k~~~~~-~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 276 LRSFLERKAEALS-IRIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCH
Confidence 9999998875322 1222456666777776543
No 179
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.17 E-value=5e-05 Score=88.89 Aligned_cols=80 Identities=29% Similarity=0.429 Sum_probs=39.4
Q ss_pred cCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCcccccCCCCCCEEEccCCCCCccchh-ccCCCCCCEEec
Q 038494 564 EGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLE-IGQLAQLQLLDL 642 (1209)
Q Consensus 564 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l~~i~~L~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l 642 (1209)
..+.+|++|++++|.|+++.. +..+..|+.|++++|.+..+..+..+..|+.+++++|.+..+... ...+.+|+.+++
T Consensus 115 ~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDL 193 (414)
T ss_pred hhhhcchheeccccccccccc-hhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhc
Confidence 345555555555555554432 444444555555555555554444455555555555554444332 244445555555
Q ss_pred cC
Q 038494 643 SN 644 (1209)
Q Consensus 643 ~~ 644 (1209)
.+
T Consensus 194 ~~ 195 (414)
T KOG0531|consen 194 GG 195 (414)
T ss_pred cC
Confidence 44
No 180
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.16 E-value=0.00074 Score=64.99 Aligned_cols=69 Identities=22% Similarity=0.303 Sum_probs=43.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCC-e
Q 038494 183 IGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEK-R 261 (1209)
Q Consensus 183 i~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k-~ 261 (1209)
|.|+|++|+|||++|+.+++..... ++.++.+.-.+. ........+..+.+...... +
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~-----~~~i~~~~~~~~----------------~~~~~~~~i~~~~~~~~~~~~~ 59 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP-----FIEIDGSELISS----------------YAGDSEQKIRDFFKKAKKSAKP 59 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE-----EEEEETTHHHTS----------------STTHHHHHHHHHHHHHHHTSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc-----cccccccccccc----------------cccccccccccccccccccccc
Confidence 5799999999999999999997522 344554332100 11111334444444444333 7
Q ss_pred EEEEEeCCCcc
Q 038494 262 VLIILDNIWKK 272 (1209)
Q Consensus 262 ~LlvlDdv~~~ 272 (1209)
.+|++||++..
T Consensus 60 ~vl~iDe~d~l 70 (132)
T PF00004_consen 60 CVLFIDEIDKL 70 (132)
T ss_dssp EEEEEETGGGT
T ss_pred eeeeeccchhc
Confidence 99999999865
No 181
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.11 E-value=0.013 Score=65.95 Aligned_cols=135 Identities=19% Similarity=0.238 Sum_probs=81.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhc
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTK 258 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (1209)
....+.|||..|.|||.|++++++.......=..+++++ .+.....+...+. ........+..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~---------~~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALR---------DNEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHH---------hhhHHHHHHhh--
Confidence 367899999999999999999999987642222444443 2333344443332 12233344433
Q ss_pred CCeEEEEEeCCCcccC---cc-ccCCCCCCCCccccccccCCcEEEEeccchhhhc--------ccCCcceEEEcCCCCH
Q 038494 259 EKRVLIILDNIWKKLG---LE-EIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLLT--------NDMNSQKIFLIEVLSK 326 (1209)
Q Consensus 259 ~k~~LlvlDdv~~~~~---~~-~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~--------~~~~~~~~~~l~~L~~ 326 (1209)
.--++++||++.... |+ .+...+..-. ..|-.||+|++.....- ......-++++.+.+.
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~-------~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~ 246 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALL-------ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDD 246 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHH-------hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCH
Confidence 124889999986532 22 2222222111 13458999997643211 1123446899999999
Q ss_pred HHHHHHHHHHhC
Q 038494 327 EEALQFFEKIVG 338 (1209)
Q Consensus 327 ~e~~~lf~~~~~ 338 (1209)
+....++.+.+.
T Consensus 247 e~r~aiL~kka~ 258 (408)
T COG0593 247 ETRLAILRKKAE 258 (408)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 182
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.01 Score=71.18 Aligned_cols=185 Identities=14% Similarity=0.094 Sum_probs=111.7
Q ss_pred cchhhHH---HHHHHHHHHHhCCC---------ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHH
Q 038494 159 EAFDSRM---KLFQDVVEALRNDK---------LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQK 226 (1209)
Q Consensus 159 ~~~~gR~---~~~~~l~~~L~~~~---------~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~ 226 (1209)
.++.|-+ +|+.++++.|.+++ .+=+-++|++|+|||-||++++-...+- |++++...
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGSE---- 379 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGSE---- 379 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechHH----
Confidence 4455654 45566666666421 3567899999999999999998877652 45554421
Q ss_pred HHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCcccc-------c----cccC
Q 038494 227 IQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDR-------K----QDLR 295 (1209)
Q Consensus 227 l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~-------~----~~~~ 295 (1209)
..+.+.... ...++.+...-+...+++|.+|+++....-.. + ....+...++ + .+..
T Consensus 380 ----FvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~-G-~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 380 ----FVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRG-G-KGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred ----HHHHhcccc------hHHHHHHHHHhhccCCeEEEeccccccccccc-c-cccCCCChHHHHHHHHHHHHhcCCcC
Confidence 122221111 45667777777778899999999986632221 1 0011111111 0 0112
Q ss_pred Cc--EEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 296 RR--TIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 296 ~s--~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
+. -++-+|...++...+. .-...+.++.-+..+..++|.-++.......+..++.+ |+...-|.+=|....
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gadl~n 524 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGADLAN 524 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHHHHh
Confidence 22 2333565555543221 23467888888888999999999875554456667776 999999988765443
No 183
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.00011 Score=75.62 Aligned_cols=81 Identities=26% Similarity=0.345 Sum_probs=46.3
Q ss_pred cCCCCCcEEEecCccccc---ccccccCCCCCcEEeccCcccCCc-ccc-cCCCCCCEEEccCCCCC--ccchhccCCCC
Q 038494 564 EGTEDLKVLSLSGIHFSS---LSSSLGHLINLQTLCLDWCQLEDV-AAI-GQLKKLEILSFRYSDIK--QLPLEIGQLAQ 636 (1209)
Q Consensus 564 ~~l~~Lr~L~L~~~~i~~---lp~~i~~l~~L~~L~l~~~~l~~l-~~i-~~L~~L~~L~l~~~~~~--~lp~~i~~L~~ 636 (1209)
...++++.|||.+|.|++ +-..+.+|++|++|+++.|++... .+. -.+.+|++|-+.++.+. .....+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 345566666666666653 333344666666666666665443 333 35556666666666433 44444566666
Q ss_pred CCEEeccC
Q 038494 637 LQLLDLSN 644 (1209)
Q Consensus 637 L~~L~l~~ 644 (1209)
++.|.++.
T Consensus 148 vtelHmS~ 155 (418)
T KOG2982|consen 148 VTELHMSD 155 (418)
T ss_pred hhhhhhcc
Confidence 66666665
No 184
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.07 E-value=0.0016 Score=64.95 Aligned_cols=103 Identities=15% Similarity=0.230 Sum_probs=69.9
Q ss_pred cccccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHH
Q 038494 155 AKDFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASD 234 (1209)
Q Consensus 155 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~ 234 (1209)
|....++||-++-++++.-...++..+-+.|.||+|+||||-+..+++..-...+-+.+.-.++|++..+.-+...|-.
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~- 101 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKM- 101 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHH-
Confidence 3346688999988888887777888999999999999999999999988865444455666666665544333222211
Q ss_pred hCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 235 LDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
+.... -.+-.++.-+||||.+++.
T Consensus 102 FAQ~k--------------v~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 102 FAQKK--------------VTLPPGRHKIIILDEADSM 125 (333)
T ss_pred HHHhh--------------ccCCCCceeEEEeeccchh
Confidence 10000 0011256678999999876
No 185
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.06 E-value=0.031 Score=65.00 Aligned_cols=189 Identities=13% Similarity=0.165 Sum_probs=118.5
Q ss_pred ccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhC
Q 038494 158 FEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLD 236 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 236 (1209)
..+++|-+.....|...+..++. ..-...|+-|+||||+|+-++........ ...+++..-..-+.|...-.
T Consensus 15 F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhcCCc
Confidence 56789999999999998876543 45568999999999999999988754321 11122222222233333211
Q ss_pred CCCC--C--CCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCccccCCCCCCCCccccccccCCcEEEEeccch
Q 038494 237 LNFD--L--NDSKPHRAKQLCQRLT----KEKRVLIILDNIWKK--LGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSK 306 (1209)
Q Consensus 237 ~~~~--~--~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~ 306 (1209)
.+.. + .....+.++.+.+... .++.=+.|+|+|.-. ..|..+...+-.-. ..-+.|+.|++.
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP--------~hV~FIlATTe~ 159 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPP--------SHVKFILATTEP 159 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCc--------cCeEEEEecCCc
Confidence 1110 0 1112556667777665 345568899999866 46777655544322 455666655554
Q ss_pred -hhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChh
Q 038494 307 -HLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPV 362 (1209)
Q Consensus 307 -~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL 362 (1209)
.+..+.......|.+..++.++-...+...+....- ....+...-|++..+|..-
T Consensus 160 ~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I-~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 160 QKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI-NIEEDALSLIARAAEGSLR 215 (515)
T ss_pred CcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCC-ccCHHHHHHHHHHcCCChh
Confidence 455555677789999999999999888888753322 2234555566776666443
No 186
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.012 Score=67.31 Aligned_cols=133 Identities=17% Similarity=0.269 Sum_probs=84.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcC
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKE 259 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 259 (1209)
..-|.+||++|+|||-||++|++..... |+++..+ +++. ..+| +.+..++.+..+-+..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlN---kYVG-------ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLN---KYVG-------ESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHH---HHhh-------hHHHHHHHHHHHhhcC
Confidence 3457899999999999999999998754 4555443 1221 1222 1156777788888778
Q ss_pred CeEEEEEeCCCcccC-------------ccccCCCCCCCCccccccccCCcEEEEeccchhhhcccC----CcceEEEcC
Q 038494 260 KRVLIILDNIWKKLG-------------LEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLLTNDM----NSQKIFLIE 322 (1209)
Q Consensus 260 k~~LlvlDdv~~~~~-------------~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~ 322 (1209)
.+++|.||.++...- ...+.-.+... ....|--||-.|...++...++ .-...+-++
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl------~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~ 677 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGL------EERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVG 677 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccc------ccccceEEEeecCCCcccchhhcCCCccCceeeec
Confidence 899999999986511 01111111110 1125666777777766654333 223566677
Q ss_pred CCCHHHHHHHHHHHhCC
Q 038494 323 VLSKEEALQFFEKIVGN 339 (1209)
Q Consensus 323 ~L~~~e~~~lf~~~~~~ 339 (1209)
.-+.+|-.++++....+
T Consensus 678 lPn~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 678 LPNAEERVAILKTITKN 694 (802)
T ss_pred CCCHHHHHHHHHHHhcc
Confidence 77888999999988863
No 187
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.04 E-value=0.005 Score=68.19 Aligned_cols=103 Identities=19% Similarity=0.206 Sum_probs=69.2
Q ss_pred HHHHHHHhC-CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCE-EEEEEcCCC-cCHHHHHHHHHHHhCCCCCCCCCh
Q 038494 169 QDVVEALRN-DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDK-VVMAEVTEN-PDVQKIQDKLASDLDLNFDLNDSK 245 (1209)
Q Consensus 169 ~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~~~~~ 245 (1209)
.++++.+.. ++...+.|+|.+|+|||||++.+++..... +-+. ++|+.+.+. .++.++++.+...+.....+....
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 346776652 344577999999999999999999887653 3343 477777654 478888888888776544322221
Q ss_pred -----HHHHHHHHHHHh-cCCeEEEEEeCCCcc
Q 038494 246 -----PHRAKQLCQRLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 246 -----~~~~~~l~~~l~-~~k~~LlvlDdv~~~ 272 (1209)
......+.+++. ++++.+||+|++...
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 112223344443 589999999999754
No 188
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.016 Score=67.35 Aligned_cols=161 Identities=14% Similarity=0.236 Sum_probs=90.5
Q ss_pred ccccccchhhHHHHHHHHHHHHhC-------------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC
Q 038494 154 QAKDFEAFDSRMKLFQDVVEALRN-------------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE 220 (1209)
Q Consensus 154 ~~~~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~ 220 (1209)
|...+.++=|-++.+.+|-+.+.- ...+-|..+|++|+|||++|+.+++..... | +.+..
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkg 501 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKG 501 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccC
Confidence 444466666677776666655541 245678899999999999999999988754 3 33333
Q ss_pred CcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCccccc--------c
Q 038494 221 NPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDRK--------Q 292 (1209)
Q Consensus 221 ~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~~--------~ 292 (1209)
+ +++. ...| +.+..++.+.+.-++-.+.+|.||.++....-+. .... +...|. .
T Consensus 502 p----EL~s---k~vG-------eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~-g~~~---~v~~RVlsqLLtEmD 563 (693)
T KOG0730|consen 502 P----ELFS---KYVG-------ESERAIREVFRKARQVAPCIIFFDEIDALAGSRG-GSSS---GVTDRVLSQLLTEMD 563 (693)
T ss_pred H----HHHH---HhcC-------chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccC-CCcc---chHHHHHHHHHHHcc
Confidence 2 1111 1111 1155666677666666779999999886532111 0000 111110 1
Q ss_pred cc--CCcEEEE-eccchhhh-cccCC---cceEEEcCCCCHHHHHHHHHHHhCC
Q 038494 293 DL--RRRTIIL-TSRSKHLL-TNDMN---SQKIFLIEVLSKEEALQFFEKIVGN 339 (1209)
Q Consensus 293 ~~--~~s~ilv-TtR~~~v~-~~~~~---~~~~~~l~~L~~~e~~~lf~~~~~~ 339 (1209)
|. ...-+|| .|-..+.. ...+. -...+.++.-+.+.-.++|+.++..
T Consensus 564 G~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 564 GLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred cccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 11 1122333 33333322 21222 3456777766777778999988863
No 189
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.03 E-value=0.02 Score=71.48 Aligned_cols=166 Identities=17% Similarity=0.166 Sum_probs=89.4
Q ss_pred cchhhHHHHHHHHHHHHhC------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHH
Q 038494 159 EAFDSRMKLFQDVVEALRN------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLA 232 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~ 232 (1209)
...+|.++.+++|++++.. ....++.++|++|+||||+|+.++...... |.. +.++...+..++...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~--~~~---i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK--YVR---MALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC--EEE---EEcCCCCCHHHhccchh
Confidence 4578999999999988871 345689999999999999999999876532 322 33343333333221111
Q ss_pred HHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCc------cccCCCCCCCCccccc-------cccCCcEE
Q 038494 233 SDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGL------EEIGIPFGDVDEKDRK-------QDLRRRTI 299 (1209)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~------~~l~~~~~~~~~~~~~-------~~~~~s~i 299 (1209)
...+. .. ......+. .. ....-++++|.++....- ..+...+.......+. ....+.-+
T Consensus 397 ~~~g~----~~--G~~~~~l~-~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 397 TYIGS----MP--GKLIQKMA-KV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred ccCCC----CC--cHHHHHHH-hc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 11110 00 11111221 11 123447899999865311 1121111110000000 01134445
Q ss_pred EEeccchhhhcccCCcceEEEcCCCCHHHHHHHHHHHh
Q 038494 300 ILTSRSKHLLTNDMNSQKIFLIEVLSKEEALQFFEKIV 337 (1209)
Q Consensus 300 lvTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 337 (1209)
|.|+....+.........++.+.+++.+|-.++..++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 55665444333233455789999999999888887765
No 190
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.03 E-value=0.0063 Score=71.33 Aligned_cols=179 Identities=16% Similarity=0.157 Sum_probs=92.6
Q ss_pred ccchhhHHHHHHHHHHHHh-------C---CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHH
Q 038494 158 FEAFDSRMKLFQDVVEALR-------N---DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKI 227 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~-------~---~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l 227 (1209)
..++.|.+..++.+.+... . ...+-|.++|++|+|||.+|+.+++..... | +-++++. +
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~~------l 295 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVGK------L 295 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhHH------h
Confidence 4456677666655554221 1 224568899999999999999999987532 2 1222211 1
Q ss_pred HHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCccccc--------cc-cCCcE
Q 038494 228 QDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDRK--------QD-LRRRT 298 (1209)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~~--------~~-~~~s~ 298 (1209)
... ..| ..+..++.+.+......+++|++|+++....-.. ...+.+...+. .. ..+--
T Consensus 296 ~~~---~vG-------ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~---~~~d~~~~~rvl~~lL~~l~~~~~~V~ 362 (489)
T CHL00195 296 FGG---IVG-------ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSE---SKGDSGTTNRVLATFITWLSEKKSPVF 362 (489)
T ss_pred ccc---ccC-------hHHHHHHHHHHHHHhcCCcEEEehhhhhhhcccc---CCCCchHHHHHHHHHHHHHhcCCCceE
Confidence 100 000 1133445555544446789999999985411000 00000000000 00 12334
Q ss_pred EEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCC
Q 038494 299 IILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGL 360 (1209)
Q Consensus 299 ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 360 (1209)
||.||.........+ .-...+.++.-+.++-.++|..+................+++.+.|.
T Consensus 363 vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~Gf 428 (489)
T CHL00195 363 VVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKF 428 (489)
T ss_pred EEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCC
Confidence 555666543221111 23457888888999999999888753221110011234666666554
No 191
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.012 Score=65.67 Aligned_cols=176 Identities=10% Similarity=0.122 Sum_probs=100.8
Q ss_pred HHHHHHHHhCCC-ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhC-------CCC
Q 038494 168 FQDVVEALRNDK-LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLD-------LNF 239 (1209)
Q Consensus 168 ~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~-------~~~ 239 (1209)
-+++...+..++ ...+.+.|+.|+||+++|..++...-.....+.. .++.. .--+.+...-. ...
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~---~Cg~C----~sC~~~~~g~HPD~~~i~p~~ 83 (334)
T PRK07993 11 YEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHK---SCGHC----RGCQLMQAGTHPDYYTLTPEK 83 (334)
T ss_pred HHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCC----HHHHHHHcCCCCCEEEEeccc
Confidence 456677776554 3577899999999999999999877432111000 00000 00000000000 000
Q ss_pred CCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccc-hhhhccc
Q 038494 240 DLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRS-KHLLTND 312 (1209)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~-~~v~~~~ 312 (1209)
....-..++++.+.+.+. .+++-++|+|+++... ....+...+-.-. .++.+|.+|.+ ..+..+.
T Consensus 84 ~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp--------~~t~fiL~t~~~~~lLpTI 155 (334)
T PRK07993 84 GKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPP--------ENTWFFLACREPARLLATL 155 (334)
T ss_pred ccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCC--------CCeEEEEEECChhhChHHH
Confidence 001122566667776665 3567799999998763 3333333222222 45556666655 4454443
Q ss_pred CCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHH
Q 038494 313 MNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVAL 364 (1209)
Q Consensus 313 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 364 (1209)
.+....+.+.+++.+++.+.+....+ ...+.+..+++.++|.|...
T Consensus 156 rSRCq~~~~~~~~~~~~~~~L~~~~~------~~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 156 RSRCRLHYLAPPPEQYALTWLSREVT------MSQDALLAALRLSAGAPGAA 201 (334)
T ss_pred HhccccccCCCCCHHHHHHHHHHccC------CCHHHHHHHHHHcCCCHHHH
Confidence 45567889999999999988865421 11344678899999999644
No 192
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.01 E-value=0.0055 Score=62.32 Aligned_cols=174 Identities=14% Similarity=0.189 Sum_probs=101.5
Q ss_pred ccchhhHHHHHHH---HHHHHhCC------CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHH
Q 038494 158 FEAFDSRMKLFQD---VVEALRND------KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQ 228 (1209)
Q Consensus 158 ~~~~~gR~~~~~~---l~~~L~~~------~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~ 228 (1209)
..+++|.++.+.+ |++.|.++ ..+-|..+|++|.|||-+|+++++..++- | +.+. ..
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vk----at--- 185 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVK----AT--- 185 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEec----hH---
Confidence 5678888766544 66677643 45788999999999999999999987752 2 1111 11
Q ss_pred HHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc---C-----------ccccCCCCCCCCcccccccc
Q 038494 229 DKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL---G-----------LEEIGIPFGDVDEKDRKQDL 294 (1209)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~---~-----------~~~l~~~~~~~~~~~~~~~~ 294 (1209)
+-|-+.+| +....+.+++.+-.+..++++.+|.++... . ..++.-.+.. ....
T Consensus 186 ~liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDg------i~en 252 (368)
T COG1223 186 ELIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDG------IKEN 252 (368)
T ss_pred HHHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccC------cccC
Confidence 12222222 125667777777776789999999987551 1 1111111111 1112
Q ss_pred CCcEEEEeccchhhhcccCC--cceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCC
Q 038494 295 RRRTIILTSRSKHLLTNDMN--SQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGL 360 (1209)
Q Consensus 295 ~~s~ilvTtR~~~v~~~~~~--~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 360 (1209)
.|-..|-.|.+.+....+.. -...++...-+++|-.+++...+..-.-+- ..-.+.++++.+|+
T Consensus 253 eGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv--~~~~~~~~~~t~g~ 318 (368)
T COG1223 253 EGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV--DADLRYLAAKTKGM 318 (368)
T ss_pred CceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc--ccCHHHHHHHhCCC
Confidence 46666666666554432221 224567777788888888888774221111 11144566666554
No 193
>PRK08116 hypothetical protein; Validated
Probab=97.00 E-value=0.002 Score=69.80 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=60.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCC
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEK 260 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 260 (1209)
..+.++|.+|+|||.||..+++....+ -..++++++ .+++..+........ ......+.+.+.+ -
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~~------~~ll~~i~~~~~~~~------~~~~~~~~~~l~~-~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNF------PQLLNRIKSTYKSSG------KEDENEIIRSLVN-A 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEH------HHHHHHHHHHHhccc------cccHHHHHHHhcC-C
Confidence 458899999999999999999998754 335666653 345555554443211 1122334555542 3
Q ss_pred eEEEEEeCCCcc--cCccc--cCCCCCCCCccccccccCCcEEEEeccch
Q 038494 261 RVLIILDNIWKK--LGLEE--IGIPFGDVDEKDRKQDLRRRTIILTSRSK 306 (1209)
Q Consensus 261 ~~LlvlDdv~~~--~~~~~--l~~~~~~~~~~~~~~~~~~s~ilvTtR~~ 306 (1209)
=|||+||+... ..|.. +...+.... ..+..+||||...
T Consensus 180 -dlLviDDlg~e~~t~~~~~~l~~iin~r~-------~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 -DLLILDDLGAERDTEWAREKVYNIIDSRY-------RKGLPTIVTTNLS 221 (268)
T ss_pred -CEEEEecccCCCCCHHHHHHHHHHHHHHH-------HCCCCEEEECCCC
Confidence 38999999543 33322 211111100 1456688888754
No 194
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.00 E-value=0.003 Score=62.74 Aligned_cols=133 Identities=15% Similarity=0.239 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHhCCCce-EEEEEcCCCChHHHHHHHHHHHHhhccc------------------CCEEEEEEcCCC--
Q 038494 163 SRMKLFQDVVEALRNDKLN-IIGVHGMGGVGKTTLVKQIAKQVMEDKV------------------FDKVVMAEVTEN-- 221 (1209)
Q Consensus 163 gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~~~~~~~~~~~------------------f~~~~wv~~s~~-- 221 (1209)
|-++..+.|.+.+..++.+ .+.++|..|+||+++|..+++..-.... ...+.|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 4566777888888776654 6799999999999999999987643222 122334433322
Q ss_pred -cCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCccccCCCCCCCCcccccccc
Q 038494 222 -PDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKK--LGLEEIGIPFGDVDEKDRKQDL 294 (1209)
Q Consensus 222 -~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~ 294 (1209)
..+ +.++.+.+.+. .+++-++|+||++.. +....+...+-...
T Consensus 81 ~i~i----------------------~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp-------- 130 (162)
T PF13177_consen 81 SIKI----------------------DQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPP-------- 130 (162)
T ss_dssp SBSH----------------------HHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTT--------
T ss_pred hhhH----------------------HHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCC--------
Confidence 223 33334444332 235678999999976 34444433222222
Q ss_pred CCcEEEEeccchh-hhcccCCcceEEEcCCCC
Q 038494 295 RRRTIILTSRSKH-LLTNDMNSQKIFLIEVLS 325 (1209)
Q Consensus 295 ~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~ 325 (1209)
.++++|++|++.. +..........+.+.+++
T Consensus 131 ~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 131 ENTYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp TTEEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred CCEEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 5778888887764 333334556677776654
No 195
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.98 E-value=0.0022 Score=62.58 Aligned_cols=90 Identities=22% Similarity=0.134 Sum_probs=53.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCC
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEK 260 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 260 (1209)
..+.|+|++|+||||+|+.++....... ..++++..+........... ...................+.......+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 5789999999999999999998876532 34566665544322222111 1111111111222344445555554333
Q ss_pred eEEEEEeCCCcccC
Q 038494 261 RVLIILDNIWKKLG 274 (1209)
Q Consensus 261 ~~LlvlDdv~~~~~ 274 (1209)
..+|++|+++....
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 49999999988743
No 196
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.97 E-value=0.044 Score=61.47 Aligned_cols=203 Identities=18% Similarity=0.215 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHH-HHHHHHHhhcccCCEEEEEEcCCC---cCHHHHHHHHHHHhCCC-
Q 038494 164 RMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLV-KQIAKQVMEDKVFDKVVMAEVTEN---PDVQKIQDKLASDLDLN- 238 (1209)
Q Consensus 164 R~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~~~wv~~s~~---~~~~~l~~~i~~~l~~~- 238 (1209)
|.+.+++|..||.+..-.+|.|.|+-|.||+.|+ .++.++.+. +..+++.+- .+-..+++.++.++|.-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5677899999999887889999999999999999 676655332 556665422 22334444444444321
Q ss_pred ----------------------C-CCCCChHHHHHHHHHH---------------------------Hh--cCCeEEEEE
Q 038494 239 ----------------------F-DLNDSKPHRAKQLCQR---------------------------LT--KEKRVLIIL 266 (1209)
Q Consensus 239 ----------------------~-~~~~~~~~~~~~l~~~---------------------------l~--~~k~~Llvl 266 (1209)
. .-....+.++..+... +. ..++=+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 1 1111223333222111 00 122568999
Q ss_pred eCCCccc-----------CccccCCCCCCCCccccccccCCcEEEEeccchhhhc---ccC--CcceEEEcCCCCHHHHH
Q 038494 267 DNIWKKL-----------GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLLT---NDM--NSQKIFLIEVLSKEEAL 330 (1209)
Q Consensus 267 Ddv~~~~-----------~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~---~~~--~~~~~~~l~~L~~~e~~ 330 (1209)
||+.... +|... +. ..+-.+||++|-+..... ..+ ...+.+.|.-.+.+.|.
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~---Lv---------~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak 222 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAAS---LV---------QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAK 222 (431)
T ss_pred cchhccCcccchHHHHHHHHHHH---HH---------hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHH
Confidence 9986431 23322 11 114557888887754332 122 34468889999999999
Q ss_pred HHHHHHhCCCCCC-------------------CcchHHHHHHHHHhCCChhHHHHHHHHHhcC-Ch-hHHHHHHH
Q 038494 331 QFFEKIVGNSAKA-------------------SAFQPLADEIVGKCGGLPVALSTVANALKNK-KL-PVWKDALT 384 (1209)
Q Consensus 331 ~lf~~~~~~~~~~-------------------~~~~~~~~~i~~~~~glPLai~~~~~~l~~~-~~-~~w~~~~~ 384 (1209)
.+...+....... .....-....++..||=-.-+..+++.++.. ++ +..+++.+
T Consensus 223 ~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 223 QYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999988632110 1244456688899999999999999999843 33 33344443
No 197
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.97 E-value=0.0014 Score=64.28 Aligned_cols=101 Identities=21% Similarity=0.283 Sum_probs=69.5
Q ss_pred CCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccC-CCCCcEEeccCcccCCc---ccccCCCCCCE
Q 038494 541 PQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGH-LINLQTLCLDWCQLEDV---AAIGQLKKLEI 616 (1209)
Q Consensus 541 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~-l~~L~~L~l~~~~l~~l---~~i~~L~~L~~ 616 (1209)
.+...+++.+|. +..++. |..++.|..|.|.+|.|+.+-+.+.. +++|..|.+.+|++..+ ..+..++.|++
T Consensus 42 d~~d~iDLtdNd--l~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDND--LRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccc--hhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 345566666653 333322 56777888888888888877555554 45688888888887665 56677788888
Q ss_pred EEccCCCCCccch----hccCCCCCCEEeccCC
Q 038494 617 LSFRYSDIKQLPL----EIGQLAQLQLLDLSNC 645 (1209)
Q Consensus 617 L~l~~~~~~~lp~----~i~~L~~L~~L~l~~~ 645 (1209)
|.+-+|.++.-+. .+.++++|++||....
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8888887765443 3678888888888763
No 198
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.96 E-value=0.00027 Score=82.75 Aligned_cols=106 Identities=27% Similarity=0.404 Sum_probs=79.2
Q ss_pred hcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCcccccCCCCCCEEEccCCCCCccchhccCCCCCCEEec
Q 038494 563 FEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDL 642 (1209)
Q Consensus 563 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l 642 (1209)
+..++.|..|++.+|.|..+...+..+.+|++|++++|.|+.+.++..+..|+.|++++|.+..++ ++..++.|+.+++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDL 169 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccC
Confidence 366788888888888888776667788888888888888888888888888888888888887664 4556788888888
Q ss_pred cCCCCCcccCc-hhhcCCCCCcEEECCCCC
Q 038494 643 SNCSSLVVIAP-NVISKFSRLEELYMGDSF 671 (1209)
Q Consensus 643 ~~~~~l~~~~~-~~l~~L~~L~~L~l~~~~ 671 (1209)
++ +.+..+.. . +..+.+|+.+.++++.
T Consensus 170 ~~-n~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 170 SY-NRIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred Cc-chhhhhhhhh-hhhccchHHHhccCCc
Confidence 87 45555543 1 3566777777776653
No 199
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.025 Score=66.13 Aligned_cols=99 Identities=24% Similarity=0.298 Sum_probs=65.0
Q ss_pred cchhhHHHHHHHHHHHHh------CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHH
Q 038494 159 EAFDSRMKLFQDVVEALR------NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLA 232 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~ 232 (1209)
++-+|.++.+++|++++. +-+.+++..+|++|+|||.+|+.++....-+ | +-++++.-.|..++-..=-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhcccce
Confidence 456799999999999987 3356899999999999999999999887643 3 2345666555555422111
Q ss_pred HHhCCCCCCCCChHHHHHHHHHHHh--cCCeEEEEEeCCCcc
Q 038494 233 SDLDLNFDLNDSKPHRAKQLCQRLT--KEKRVLIILDNIWKK 272 (1209)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~~l~--~~k~~LlvlDdv~~~ 272 (1209)
..+| ..-.++.+.|+ +...=|+.+|.|+..
T Consensus 486 TYVG----------AMPGkiIq~LK~v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 486 TYVG----------AMPGKIIQCLKKVKTENPLILIDEVDKL 517 (906)
T ss_pred eeec----------cCChHHHHHHHhhCCCCceEEeehhhhh
Confidence 1111 01122333343 245678999999865
No 200
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.91 E-value=0.0018 Score=63.58 Aligned_cols=102 Identities=21% Similarity=0.304 Sum_probs=70.6
Q ss_pred CCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCc-ccccC-CCCCCEEEccCCCCCccch--hccCCCCCCEEe
Q 038494 566 TEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDV-AAIGQ-LKKLEILSFRYSDIKQLPL--EIGQLAQLQLLD 641 (1209)
Q Consensus 566 l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l-~~i~~-L~~L~~L~l~~~~~~~lp~--~i~~L~~L~~L~ 641 (1209)
+...-.+||++|.+..++. +..+..|.+|.+.+|.|..+ +.+.. +++|+.|.+.+|++..+.. .+..+++|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3456778888888877654 67788888888888888888 55544 5568888888887775532 355677888887
Q ss_pred ccCCCCCcccC---chhhcCCCCCcEEECCC
Q 038494 642 LSNCSSLVVIA---PNVISKFSRLEELYMGD 669 (1209)
Q Consensus 642 l~~~~~l~~~~---~~~l~~L~~L~~L~l~~ 669 (1209)
+-+ +...... ...+.++++|++|++..
T Consensus 120 ll~-Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLG-NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecC-CchhcccCceeEEEEecCcceEeehhh
Confidence 766 3333222 23467788888888754
No 201
>PHA00729 NTP-binding motif containing protein
Probab=96.88 E-value=0.0053 Score=63.23 Aligned_cols=36 Identities=31% Similarity=0.463 Sum_probs=28.8
Q ss_pred HHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 170 DVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 170 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.+++.+...+...|.|+|.+|+||||||..+++...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555555667899999999999999999998753
No 202
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.018 Score=67.87 Aligned_cols=98 Identities=14% Similarity=0.220 Sum_probs=71.0
Q ss_pred ccccccchhhHHHHHHHHHHHHhC------------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCC
Q 038494 154 QAKDFEAFDSRMKLFQDVVEALRN------------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTEN 221 (1209)
Q Consensus 154 ~~~~~~~~~gR~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~ 221 (1209)
|.-.+.++=|-++.+.+|.+-+.- .+..-|.++|++|.|||-+|++|+.+.... |++|-.+
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-------FlSVKGP 739 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-------FLSVKGP 739 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-------EEeecCH
Confidence 444467777888889999887751 124568899999999999999999987653 4555443
Q ss_pred cCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 222 PDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 222 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
+++. ..+|. .++-++++.++-++-++++|.||.+++.
T Consensus 740 ----ELLN---MYVGq-------SE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ----ELLN---MYVGQ-------SEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred ----HHHH---HHhcc-------hHHHHHHHHHHhhccCCeEEEecccccc
Confidence 1211 11221 1667788888888789999999999876
No 203
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.87 E-value=0.012 Score=74.30 Aligned_cols=176 Identities=15% Similarity=0.212 Sum_probs=99.6
Q ss_pred cccchhhHHHHHHHHHHHHhC-------------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcC
Q 038494 157 DFEAFDSRMKLFQDVVEALRN-------------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPD 223 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~ 223 (1209)
....+.|.+..++.|.+.+.- ...+-|.++|++|+|||++|+.+++..... | +.+..
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~--f-----i~v~~--- 520 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN--F-----IAVRG--- 520 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEeh---
Confidence 355677888777777766541 123458899999999999999999986532 2 22221
Q ss_pred HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCc--------------cccCCCCCCCCccc
Q 038494 224 VQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGL--------------EEIGIPFGDVDEKD 289 (1209)
Q Consensus 224 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~--------------~~l~~~~~~~~~~~ 289 (1209)
.+++. +.++ ..+..++.+........+.+|++|+++....- ..+...+...
T Consensus 521 -~~l~~---~~vG-------ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~---- 585 (733)
T TIGR01243 521 -PEILS---KWVG-------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGI---- 585 (733)
T ss_pred -HHHhh---cccC-------cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcc----
Confidence 11111 0111 11445566666665567899999999764210 0010000000
Q ss_pred cccccCCcEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCCh
Q 038494 290 RKQDLRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLP 361 (1209)
Q Consensus 290 ~~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 361 (1209)
....+.-||.||...+...... .-...+.++..+.++-.++|+.+.......++ .....+++.+.|.-
T Consensus 586 --~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~--~~l~~la~~t~g~s 657 (733)
T TIGR01243 586 --QELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED--VDLEELAEMTEGYT 657 (733)
T ss_pred --cCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc--CCHHHHHHHcCCCC
Confidence 0113444666776554332222 23467889989999999999877653222111 11346777777754
No 204
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.86 E-value=0.014 Score=73.33 Aligned_cols=102 Identities=18% Similarity=0.216 Sum_probs=60.4
Q ss_pred chhhHHHHHHHHHHHHhC-------C--CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHH
Q 038494 160 AFDSRMKLFQDVVEALRN-------D--KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDK 230 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~ 230 (1209)
.++|.+..++.+.+.+.. . ...++.++|++|+|||++|+.+++... ...+.+++++-.+...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~~---- 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKHT---- 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhccc----
Confidence 466888888888887762 1 234678999999999999999998763 2345566554222111
Q ss_pred HHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 231 LASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
+.+.++.+..... .+....+.+.+.....-+|+||+++..
T Consensus 526 ~~~lig~~~gyvg--~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 VSRLIGAPPGYVG--FEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred HHHHhcCCCCCcc--cchhhHHHHHHHhCCCeEEEEechhhc
Confidence 1122222211110 112223444444445579999999876
No 205
>PRK08118 topology modulation protein; Reviewed
Probab=96.86 E-value=0.00065 Score=67.88 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=29.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhc-ccCCEEEEE
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMED-KVFDKVVMA 216 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv 216 (1209)
+.|.|+|++|+||||+|+.+++..... -+|+.++|-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 358999999999999999999988654 457777763
No 206
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.02 Score=63.84 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccc-hhhhcccCCcceE
Q 038494 246 PHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRS-KHLLTNDMNSQKI 318 (1209)
Q Consensus 246 ~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~-~~v~~~~~~~~~~ 318 (1209)
.++++.+.+.+. .+++-++|+|+++... .+..+...+-.-. +++.+|++|.+ ..+..+.......
T Consensus 114 idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp--------~~t~fiL~t~~~~~LLpTI~SRcq~ 185 (342)
T PRK06964 114 IEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPP--------PGTVFLLVSARIDRLLPTILSRCRQ 185 (342)
T ss_pred HHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCC--------cCcEEEEEECChhhCcHHHHhcCEE
Confidence 566677777664 2456689999998763 4444433332222 45555555544 5554444456689
Q ss_pred EEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 319 FLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 319 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
+.+.+++.++..+.+.... . ++ ...++..++|.|+....+
T Consensus 186 i~~~~~~~~~~~~~L~~~~---~--~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 186 FPMTVPAPEAAAAWLAAQG---V--AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred EEecCCCHHHHHHHHHHcC---C--Ch----HHHHHHHcCCCHHHHHHH
Confidence 9999999999999987751 1 11 224578889999755433
No 207
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.032 Score=64.00 Aligned_cols=94 Identities=17% Similarity=0.287 Sum_probs=66.2
Q ss_pred ccchhhHHHHHHHHHHHHh---C---------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHH
Q 038494 158 FEAFDSRMKLFQDVVEALR---N---------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQ 225 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~ 225 (1209)
...+=|-++.+.++.+.+. . ...+-|.++|++|+|||.||+.++.+..+- ++.++-+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch----
Confidence 4456688888888777765 1 124568899999999999999999988753 2333322
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 226 KIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 226 ~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
+|..... .+.++.++++.+.-.+..++++++|+++..
T Consensus 258 ----eivSGvS------GESEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 ----EIVSGVS------GESEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred ----hhhcccC------cccHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 1222221 122677888888888789999999999865
No 208
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.011 Score=69.43 Aligned_cols=163 Identities=17% Similarity=0.176 Sum_probs=92.1
Q ss_pred chhhHHHHHHHHHHHHh------CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHH
Q 038494 160 AFDSRMKLFQDVVEALR------NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLAS 233 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~ 233 (1209)
+-+|-++.+++|++.|. .-+.++++++|++|+|||+|++.+++...-+ |- -++++.-.|..++...=-.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--fv---R~sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--FV---RISLGGVRDEAEIRGHRRT 398 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--EE---EEecCccccHHHhcccccc
Confidence 45699999999999887 2345799999999999999999999988643 42 2344444444433211111
Q ss_pred HhCCCCCCCCChHHHHHHHHHHHh--cCCeEEEEEeCCCcccC-c-----cccCCCCCCCCccccc-----cccCCcEEE
Q 038494 234 DLDLNFDLNDSKPHRAKQLCQRLT--KEKRVLIILDNIWKKLG-L-----EEIGIPFGDVDEKDRK-----QDLRRRTII 300 (1209)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~--~~k~~LlvlDdv~~~~~-~-----~~l~~~~~~~~~~~~~-----~~~~~s~il 300 (1209)
.+|. .-.++.+.+. +.+.=+++||.++.... + .++...+.+.....|. ..-.=|+|+
T Consensus 399 YIGa----------mPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 399 YIGA----------MPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred cccc----------CChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 1110 1112333333 24677999999986521 1 1111111110000000 000123343
Q ss_pred -Eeccc-hh-hhcccCCcceEEEcCCCCHHHHHHHHHHHh
Q 038494 301 -LTSRS-KH-LLTNDMNSQKIFLIEVLSKEEALQFFEKIV 337 (1209)
Q Consensus 301 -vTtR~-~~-v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 337 (1209)
|||-+ -+ +..-.+....++++.+.+++|-.++-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 34433 22 322234667899999999999988888775
No 209
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.72 E-value=0.047 Score=64.05 Aligned_cols=168 Identities=15% Similarity=0.162 Sum_probs=105.1
Q ss_pred chhhHHHHHHHHHHHHh----C-CCceEEEEEcCCCChHHHHHHHHHHHHhh------cccCCEEEEEEcCCCcCHHHHH
Q 038494 160 AFDSRMKLFQDVVEALR----N-DKLNIIGVHGMGGVGKTTLVKQIAKQVME------DKVFDKVVMAEVTENPDVQKIQ 228 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~----~-~~~~vi~I~G~~GiGKTtLa~~~~~~~~~------~~~f~~~~wv~~s~~~~~~~l~ 228 (1209)
.+-+|+.+..+|-+++. + .....+-|.|.+|.|||..+..|.+.... -..|+. +.|+.-.-..+.+++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHHHH
Confidence 44589999999988876 3 34458899999999999999999986541 123443 345555556789999
Q ss_pred HHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCcccC--ccccCCCCCCCCccccccccCCcEEEEe
Q 038494 229 DKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKLG--LEEIGIPFGDVDEKDRKQDLRRRTIILT 302 (1209)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~~~s~ilvT 302 (1209)
..|...+.+..... ...+..+..++. ..+.++|++|+++..-. -+-+...|.+.. .++||++|.
T Consensus 476 ~~I~~~lsg~~~~~---~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt-------~~~sKLvvi 545 (767)
T KOG1514|consen 476 EKIWEALSGERVTW---DAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPT-------LKNSKLVVI 545 (767)
T ss_pred HHHHHhcccCcccH---HHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCc-------CCCCceEEE
Confidence 99999987654332 334455555554 23568999999876521 111111222211 167777664
Q ss_pred cc-ch-hhhcccC-------CcceEEEcCCCCHHHHHHHHHHHhC
Q 038494 303 SR-SK-HLLTNDM-------NSQKIFLIEVLSKEEALQFFEKIVG 338 (1209)
Q Consensus 303 tR-~~-~v~~~~~-------~~~~~~~l~~L~~~e~~~lf~~~~~ 338 (1209)
+= +- +.....+ -....+..+|.+.++-.++...+..
T Consensus 546 ~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~ 590 (767)
T KOG1514|consen 546 AIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLK 590 (767)
T ss_pred EecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhc
Confidence 42 11 1111001 1235677888888888888777765
No 210
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.66 E-value=0.023 Score=61.64 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHH
Q 038494 166 KLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQD 229 (1209)
Q Consensus 166 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~ 229 (1209)
+.++++..++..+ ..|.+.|.+|+|||++|+.+++... ...+++++....+..+++.
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dllg 65 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLVG 65 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHhh
Confidence 3445555555443 3567999999999999999987432 1245566666555555543
No 211
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.001 Score=68.74 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=33.1
Q ss_pred ccCCcEEEEecccCceeeeccCCccccccCCcccEEecccccccchhcccccccccccCCccEEEEecCCCcc
Q 038494 788 FPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLEAICHSQLREDQFFSNLKIIEVESCDKLK 860 (1209)
Q Consensus 788 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 860 (1209)
||++..+.+..|+-- ... .......||.+-.|.+.. +++.+|... -....||.|..|.+++.|-+.
T Consensus 198 Fpnv~sv~v~e~PlK-~~s---~ek~se~~p~~~~LnL~~-~~idswasv--D~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLK-TES---SEKGSEPFPSLSCLNLGA-NNIDSWASV--DALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cccchheeeecCccc-chh---hcccCCCCCcchhhhhcc-cccccHHHH--HHHcCCchhheeeccCCcccc
Confidence 555555555555421 110 111223456666666655 555555432 122447777777777765444
No 212
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.045 Score=55.35 Aligned_cols=155 Identities=14% Similarity=0.170 Sum_probs=90.2
Q ss_pred chhhHHHHHHHHHHHHhC-------------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHH
Q 038494 160 AFDSRMKLFQDVVEALRN-------------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQK 226 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~ 226 (1209)
.+-|-++.+++|.+.+.- .+.+-+.++|++|.|||-||+.||+.-. +.|+.+|... -
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~-------c~firvsgse---l 217 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGSE---L 217 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc-------eEEEEechHH---H
Confidence 334567777777776651 2346688999999999999999987644 4567777642 1
Q ss_pred HHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCccc--c-----------ccc
Q 038494 227 IQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKD--R-----------KQD 293 (1209)
Q Consensus 227 l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~--~-----------~~~ 293 (1209)
+++-|-+. ....+++.---+...+.+|..|.+++...-.-- -..+++++ | ...
T Consensus 218 vqk~igeg-----------srmvrelfvmarehapsiifmdeidsigs~r~e---~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 218 VQKYIGEG-----------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVE---SGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred HHHHhhhh-----------HHHHHHHHHHHHhcCCceEeeeccccccccccc---CCCCccHHHHHHHHHHHHhcccccc
Confidence 22222110 334444444444456788999988765211000 00011110 0 012
Q ss_pred cCCcEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhC
Q 038494 294 LRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVG 338 (1209)
Q Consensus 294 ~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~ 338 (1209)
..+-+||+.|..-++...+. .....++.++-+++.-.++++-+..
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSR 332 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhh
Confidence 25778999887766543222 2345678888887777777776653
No 213
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.56 E-value=0.01 Score=62.30 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=54.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHh-CC---C--CCCCCC---hHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDL-DL---N--FDLNDS---KPHRAK 250 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l-~~---~--~~~~~~---~~~~~~ 250 (1209)
..++.|+|.+|+|||++|.+++...... -..++|++... ++..++.+.. +.. .. . ...... ....+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQIA-EDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHHHH-HhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 5789999999999999999998877543 46889999976 6666554432 221 00 0 000011 112244
Q ss_pred HHHHHHhcCCeEEEEEeCCCc
Q 038494 251 QLCQRLTKEKRVLIILDNIWK 271 (1209)
Q Consensus 251 ~l~~~l~~~k~~LlvlDdv~~ 271 (1209)
.+.+.+.+.+.-+||+|.+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHH
Confidence 444444444566889998754
No 214
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.56 E-value=0.013 Score=74.07 Aligned_cols=106 Identities=15% Similarity=0.206 Sum_probs=60.8
Q ss_pred cchhhHHHHHHHHHHHHhC---------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHH
Q 038494 159 EAFDSRMKLFQDVVEALRN---------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQD 229 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~ 229 (1209)
..++|.+..++.+.+.+.. ....++.++|++|+|||.+|+.+++..... ....+-++++.-.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhhh----
Confidence 4578999999999988751 123478999999999999999998876422 1222333333211111
Q ss_pred HHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 230 KLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
.+.+-+|.+..... ......+.+.+.+...-+|+||+++..
T Consensus 640 ~~~~l~g~~~gyvg--~~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 640 TVSRLKGSPPGYVG--YGEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hhccccCCCCCccc--ccccchHHHHHHhCCCcEEEEechhhc
Confidence 11111222111110 011112344454456689999999865
No 215
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.55 E-value=0.0061 Score=63.61 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=30.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcC
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVT 219 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s 219 (1209)
-.++|+|.+|.||||++..+..... ..|..+++++-.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~~ 50 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITPE 50 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEecC
Confidence 3678999999999999999998766 448888887553
No 216
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.55 E-value=0.027 Score=71.03 Aligned_cols=177 Identities=16% Similarity=0.189 Sum_probs=97.0
Q ss_pred cccchhhHHHHHHHHHHHHhC-------------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcC
Q 038494 157 DFEAFDSRMKLFQDVVEALRN-------------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPD 223 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~ 223 (1209)
...++.|.++.++.+.+++.- ...+.|.++|++|+|||++|+.+++..... | +.++.+
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~--~---i~i~~~---- 246 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY--F---ISINGP---- 246 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--E---EEEecH----
Confidence 355688999999998887641 123568899999999999999999876421 2 222221
Q ss_pred HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCc-------------cccCCCCCCCCcccc
Q 038494 224 VQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGL-------------EEIGIPFGDVDEKDR 290 (1209)
Q Consensus 224 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~-------------~~l~~~~~~~~~~~~ 290 (1209)
++. ... .......+..+.+......+.+|++|+++....- ..+...+....
T Consensus 247 --~i~----~~~------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~---- 310 (733)
T TIGR01243 247 --EIM----SKY------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLK---- 310 (733)
T ss_pred --HHh----ccc------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccc----
Confidence 111 000 0011333444555554456789999998754210 01111010000
Q ss_pred ccccCCcEEEE-eccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhH
Q 038494 291 KQDLRRRTIIL-TSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVA 363 (1209)
Q Consensus 291 ~~~~~~s~ilv-TtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 363 (1209)
..+..++| ||....-..... .-...+.+...+.++-.+++..+........ ......+++.+.|.--+
T Consensus 311 ---~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~--d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 311 ---GRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE--DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred ---cCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc--ccCHHHHHHhCCCCCHH
Confidence 12333444 444332111111 1235677888888888888886654222111 12345788888886543
No 217
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.51 E-value=0.016 Score=59.51 Aligned_cols=88 Identities=20% Similarity=0.281 Sum_probs=57.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC-CcCHHHHHHHHHHHhCCCCCC---CCChHHHHHHHHHHH
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE-NPDVQKIQDKLASDLDLNFDL---NDSKPHRAKQLCQRL 256 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~l~~~l 256 (1209)
++|.++|+.|+||||.+..++.....+ -..+..++... .....+-++..++.++.+... ..+..+......+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 689999999999999999999888754 34667777643 335667778889998876422 223344444445555
Q ss_pred hcCCeEEEEEeCCC
Q 038494 257 TKEKRVLIILDNIW 270 (1209)
Q Consensus 257 ~~~k~~LlvlDdv~ 270 (1209)
...+.=+|++|-.-
T Consensus 80 ~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 80 RKKGYDLVLIDTAG 93 (196)
T ss_dssp HHTTSSEEEEEE-S
T ss_pred hhcCCCEEEEecCC
Confidence 43334577777653
No 218
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.094 Score=59.20 Aligned_cols=152 Identities=21% Similarity=0.304 Sum_probs=86.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh--
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT-- 257 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-- 257 (1209)
...+.+.|++|.|||+||..++.... |..+--++..+-. |... ......+.+.+.
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiSpe~mi-------------G~sE------saKc~~i~k~F~DA 594 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIISPEDMI-------------GLSE------SAKCAHIKKIFEDA 594 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeChHHcc-------------CccH------HHHHHHHHHHHHHh
Confidence 45677899999999999999987654 6654433321111 1100 122223333332
Q ss_pred -cCCeEEEEEeCCCcccCccccCCCCCCCCcccc-----ccccCCcEEEE--eccchhhhcccCC----cceEEEcCCCC
Q 038494 258 -KEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDR-----KQDLRRRTIIL--TSRSKHLLTNDMN----SQKIFLIEVLS 325 (1209)
Q Consensus 258 -~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~-----~~~~~~s~ilv--TtR~~~v~~~~~~----~~~~~~l~~L~ 325 (1209)
+.+--.||+||++..-+|-.+++.+...-.... .+...|-|.+| ||....+.. .|+ -...|.++.++
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~-~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ-EMGILDCFSSTIHVPNLT 673 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH-HcCHHHhhhheeecCccC
Confidence 245579999999999888877665421110000 01224445444 555555554 233 23578899997
Q ss_pred H-HHHHHHHHHHhCCCCCCCcchHHHHHHHHHh
Q 038494 326 K-EEALQFFEKIVGNSAKASAFQPLADEIVGKC 357 (1209)
Q Consensus 326 ~-~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~ 357 (1209)
. ++..+.+...- ...+.+.+.++.+...+|
T Consensus 674 ~~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELN--IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHcc--CCCcchhHHHHHHHhccc
Confidence 6 77777776642 122334455666666666
No 219
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.49 E-value=0.019 Score=65.15 Aligned_cols=143 Identities=15% Similarity=0.118 Sum_probs=82.9
Q ss_pred hhhHHHHHHHHHHHHh-CCCceE-EEEEcCCCChHHHHHHHHHHHHhhcc-------------------cCCEEEEEEcC
Q 038494 161 FDSRMKLFQDVVEALR-NDKLNI-IGVHGMGGVGKTTLVKQIAKQVMEDK-------------------VFDKVVMAEVT 219 (1209)
Q Consensus 161 ~~gR~~~~~~l~~~L~-~~~~~v-i~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~s 219 (1209)
++|-+....++..+.. .++.+. +.++|++|+||||+|..+++...... ....+..+..+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4566777778888877 344444 99999999999999999999886432 12334445444
Q ss_pred CCcC---HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc--CccccCCCCCCCCcccccccc
Q 038494 220 ENPD---VQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDL 294 (1209)
Q Consensus 220 ~~~~---~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~ 294 (1209)
+... ..+..+.+.+....... .++.-++++|+++... .-..+....-...
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEep~-------- 137 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPP-------- 137 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCC--------
Confidence 4433 23333333333322111 2467899999998763 2222222222222
Q ss_pred CCcEEEEeccch-hhhcccCCcceEEEcCCCCHHH
Q 038494 295 RRRTIILTSRSK-HLLTNDMNSQKIFLIEVLSKEE 328 (1209)
Q Consensus 295 ~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~e 328 (1209)
..+.+|++|... .+..........+++.+.+..+
T Consensus 138 ~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~~~ 172 (325)
T COG0470 138 KNTRFILITNDPSKILPTIRSRCQRIRFKPPSRLE 172 (325)
T ss_pred CCeEEEEEcCChhhccchhhhcceeeecCCchHHH
Confidence 567777777743 3333233455677777744433
No 220
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.48 E-value=0.0065 Score=65.26 Aligned_cols=136 Identities=21% Similarity=0.324 Sum_probs=78.1
Q ss_pred chhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHH-HHHhhcccCCEEE-E---EEcC---------CCcCHH
Q 038494 160 AFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIA-KQVMEDKVFDKVV-M---AEVT---------ENPDVQ 225 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~-~~~~~~~~f~~~~-w---v~~s---------~~~~~~ 225 (1209)
++-+|..+..--+++|.+++...|.+.|.+|.|||.||.+.. +...++..|..++ . +.++ ++..+.
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~ 304 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMG 304 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhcc
Confidence 345677787888889999999999999999999999988776 3333444565433 1 1222 222344
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHH----------HHHhcC---CeEEEEEeCCCccc--CccccCCCCCCCCcccc
Q 038494 226 KIQDKLASDLDLNFDLNDSKPHRAKQLC----------QRLTKE---KRVLIILDNIWKKL--GLEEIGIPFGDVDEKDR 290 (1209)
Q Consensus 226 ~l~~~i~~~l~~~~~~~~~~~~~~~~l~----------~~l~~~---k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~ 290 (1209)
-....|...+..-..........+..+. .+++ + ..-+||+|.+.+.. +...+....+
T Consensus 305 PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IR-GRSl~~~FiIIDEaQNLTpheikTiltR~G------- 376 (436)
T COG1875 305 PWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIR-GRSLPDSFIIIDEAQNLTPHELKTILTRAG------- 376 (436)
T ss_pred chHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeec-ccccccceEEEehhhccCHHHHHHHHHhcc-------
Confidence 4555555444221111111122222221 1111 2 24689999998873 3344432222
Q ss_pred ccccCCcEEEEeccchh
Q 038494 291 KQDLRRRTIILTSRSKH 307 (1209)
Q Consensus 291 ~~~~~~s~ilvTtR~~~ 307 (1209)
.|+||+.|---.+
T Consensus 377 ----~GsKIVl~gd~aQ 389 (436)
T COG1875 377 ----EGSKIVLTGDPAQ 389 (436)
T ss_pred ----CCCEEEEcCCHHH
Confidence 7999888765443
No 221
>PRK12377 putative replication protein; Provisional
Probab=96.44 E-value=0.016 Score=61.60 Aligned_cols=75 Identities=23% Similarity=0.339 Sum_probs=49.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcC
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKE 259 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 259 (1209)
...+.++|.+|+|||+||..+++....+ ...++++++. +++..+-..... . .....+.+.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~----~----~~~~~~l~~l~-- 162 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDN----G----QSGEKFLQELC-- 162 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhc----c----chHHHHHHHhc--
Confidence 4678999999999999999999998754 3345666653 344444443321 0 11223455553
Q ss_pred CeEEEEEeCCCcc
Q 038494 260 KRVLIILDNIWKK 272 (1209)
Q Consensus 260 k~~LlvlDdv~~~ 272 (1209)
+--|||+||+...
T Consensus 163 ~~dLLiIDDlg~~ 175 (248)
T PRK12377 163 KVDLLVLDEIGIQ 175 (248)
T ss_pred CCCEEEEcCCCCC
Confidence 5679999999544
No 222
>PRK07261 topology modulation protein; Provisional
Probab=96.44 E-value=0.0086 Score=60.22 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=26.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhc-ccCCEEEEE
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVMED-KVFDKVVMA 216 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv 216 (1209)
.|.|+|++|+||||||+.++...... -+.|.+.|-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 48999999999999999998775432 234556663
No 223
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.34 E-value=0.14 Score=59.24 Aligned_cols=88 Identities=23% Similarity=0.296 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC-CcCHHHHHHHHHHHhCCCCCCC---CChHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE-NPDVQKIQDKLASDLDLNFDLN---DSKPHRAKQLCQR 255 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~l~~~ 255 (1209)
..+|.++|.+|+||||.|..++.....+. + .+.-+++.. .....+.++.+++.++.+.... .+....+....++
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 56899999999999999999998876532 2 344454432 1233455666777776654322 2223334444444
Q ss_pred HhcCCeEEEEEeCCCc
Q 038494 256 LTKEKRVLIILDNIWK 271 (1209)
Q Consensus 256 l~~~k~~LlvlDdv~~ 271 (1209)
+.. . -+||+|..-.
T Consensus 173 ~~~-~-DvVIIDTAGr 186 (437)
T PRK00771 173 FKK-A-DVIIVDTAGR 186 (437)
T ss_pred hhc-C-CEEEEECCCc
Confidence 442 3 5688887743
No 224
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.31 E-value=0.01 Score=69.46 Aligned_cols=75 Identities=25% Similarity=0.369 Sum_probs=56.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhc
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTK 258 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (1209)
..++..++|++|.||||||+-+++... | .++=|++|+..+...+-+.|...+.......+ +
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a--------------d 385 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLDA--------------D 385 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcccccc--------------C
Confidence 357899999999999999999988754 3 46778999998888887777766644332222 2
Q ss_pred CCeEEEEEeCCCcc
Q 038494 259 EKRVLIILDNIWKK 272 (1209)
Q Consensus 259 ~k~~LlvlDdv~~~ 272 (1209)
+++.-||+|.++-.
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 57888899988754
No 225
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.30 E-value=0.018 Score=61.81 Aligned_cols=85 Identities=25% Similarity=0.337 Sum_probs=55.0
Q ss_pred HHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHH
Q 038494 168 FQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPH 247 (1209)
Q Consensus 168 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~ 247 (1209)
...+.+++. +..-+.++|.+|+|||.||.+++++.. +.. -.+.++++ .++...+....... .
T Consensus 95 ~~~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g-~sv~f~~~------~el~~~Lk~~~~~~--------~ 156 (254)
T COG1484 95 LASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KAG-ISVLFITA------PDLLSKLKAAFDEG--------R 156 (254)
T ss_pred HHHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-HcC-CeEEEEEH------HHHHHHHHHHHhcC--------c
Confidence 344445554 556889999999999999999999998 432 34555654 44556555554321 1
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 248 RAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 248 ~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
....+.+.+. +-=|||+||+-.+
T Consensus 157 ~~~~l~~~l~--~~dlLIiDDlG~~ 179 (254)
T COG1484 157 LEEKLLRELK--KVDLLIIDDIGYE 179 (254)
T ss_pred hHHHHHHHhh--cCCEEEEecccCc
Confidence 2223444443 4469999998764
No 226
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.058 Score=65.51 Aligned_cols=105 Identities=22% Similarity=0.295 Sum_probs=63.3
Q ss_pred cchhhHHHHHHHHHHHHh---------CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHH
Q 038494 159 EAFDSRMKLFQDVVEALR---------NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQD 229 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~---------~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~ 229 (1209)
..++|.+..+..+.+++. +....++...|+.|+|||.||+.++...-... +..+-+++|+-..-..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~EkHs--- 565 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEYMEKHS--- 565 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHHHHHHH---
Confidence 357799999999999887 12345778899999999999999998774321 3344455543211111
Q ss_pred HHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeE-EEEEeCCCcc
Q 038494 230 KLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRV-LIILDNIWKK 272 (1209)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~-LlvlDdv~~~ 272 (1209)
+.+-+|.+..-... +.-..+-+..+ .++| +|.||+++..
T Consensus 566 -VSrLIGaPPGYVGy--eeGG~LTEaVR-r~PySViLlDEIEKA 605 (786)
T COG0542 566 -VSRLIGAPPGYVGY--EEGGQLTEAVR-RKPYSVILLDEIEKA 605 (786)
T ss_pred -HHHHhCCCCCCcee--ccccchhHhhh-cCCCeEEEechhhhc
Confidence 12223332211111 11223444454 4555 8889999876
No 227
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.2 Score=51.20 Aligned_cols=192 Identities=15% Similarity=0.151 Sum_probs=101.0
Q ss_pred ccccccchhhHHHHHHHHHHHHhC-------------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC
Q 038494 154 QAKDFEAFDSRMKLFQDVVEALRN-------------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE 220 (1209)
Q Consensus 154 ~~~~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~ 220 (1209)
|.....++-|-++.++++++++.- ...+-+..+|++|.|||-+|++.+..-... |-. +..
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT--FLK-----LAg 238 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT--FLK-----LAG 238 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch--HHH-----hcc
Confidence 334456677899999999998751 124567899999999999999988765533 311 111
Q ss_pred CcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC--cc--------------ccCCCCCC
Q 038494 221 NPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLG--LE--------------EIGIPFGD 284 (1209)
Q Consensus 221 ~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~--~~--------------~l~~~~~~ 284 (1209)
+ ++.+.+ +. +....++....--+...+.+|.+|.++.... ++ .+...+..
T Consensus 239 P--------QLVQMf-IG-----dGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDG 304 (424)
T KOG0652|consen 239 P--------QLVQMF-IG-----DGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 304 (424)
T ss_pred h--------HHHhhh-hc-----chHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcC
Confidence 1 011111 11 1133444444333456789999998864410 00 01111111
Q ss_pred CCccccccccCCcEEEEeccchhhhccc----CCcceEEEcCCCCHHHHHHHHHHHhC--CCCCCCcchHHHHHHHHHhC
Q 038494 285 VDEKDRKQDLRRRTIILTSRSKHLLTND----MNSQKIFLIEVLSKEEALQFFEKIVG--NSAKASAFQPLADEIVGKCG 358 (1209)
Q Consensus 285 ~~~~~~~~~~~~s~ilvTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~lf~~~~~--~~~~~~~~~~~~~~i~~~~~ 358 (1209)
.. ....-+||-.|...++...+ ..-...++.+.-+++.-..+++-++. ...++-.++++++.--..-|
T Consensus 305 Fs------s~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNG 378 (424)
T KOG0652|consen 305 FS------SDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNG 378 (424)
T ss_pred CC------CccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCc
Confidence 00 11356788877766554211 12234566655555444555555543 33444556666554333323
Q ss_pred CChhHHHHHHHHHh
Q 038494 359 GLPVALSTVANALK 372 (1209)
Q Consensus 359 glPLai~~~~~~l~ 372 (1209)
.--.|+.+=|++++
T Consensus 379 AQcKAVcVEAGMiA 392 (424)
T KOG0652|consen 379 AQCKAVCVEAGMIA 392 (424)
T ss_pred hhheeeehhhhHHH
Confidence 33345555566654
No 228
>PRK06526 transposase; Provisional
Probab=96.25 E-value=0.0037 Score=66.93 Aligned_cols=74 Identities=20% Similarity=0.230 Sum_probs=44.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcC
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKE 259 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 259 (1209)
...+.|+|++|+|||+||..+++....+. + .+.|+ +..++...+...... .........+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g-~-~v~f~------t~~~l~~~l~~~~~~---------~~~~~~l~~l~-- 158 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG-H-RVLFA------TAAQWVARLAAAHHA---------GRLQAELVKLG-- 158 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC-C-chhhh------hHHHHHHHHHHHHhc---------CcHHHHHHHhc--
Confidence 34689999999999999999998776432 2 23343 334455554432110 01112233342
Q ss_pred CeEEEEEeCCCcc
Q 038494 260 KRVLIILDNIWKK 272 (1209)
Q Consensus 260 k~~LlvlDdv~~~ 272 (1209)
+.-+||+||+...
T Consensus 159 ~~dlLIIDD~g~~ 171 (254)
T PRK06526 159 RYPLLIVDEVGYI 171 (254)
T ss_pred cCCEEEEcccccC
Confidence 4568999999754
No 229
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.014 Score=65.51 Aligned_cols=89 Identities=19% Similarity=0.238 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHhCCC---------ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHH
Q 038494 163 SRMKLFQDVVEALRNDK---------LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLAS 233 (1209)
Q Consensus 163 gR~~~~~~l~~~L~~~~---------~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~ 233 (1209)
.-++|+++++++|.++. .+-|.++|++|.|||-||++++-+..+- | |...+.+|+.. +-
T Consensus 311 EAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFdEm------~V 378 (752)
T KOG0734|consen 311 EAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFDEM------FV 378 (752)
T ss_pred HHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchhhh------hh
Confidence 34567888888887532 3568899999999999999998776653 2 33333333221 11
Q ss_pred HhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 234 DLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
..| ...++.+...-+..-+++|.+|.++..
T Consensus 379 GvG---------ArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 379 GVG---------ARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred ccc---------HHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 111 556677777777678999999999865
No 230
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.069 Score=64.28 Aligned_cols=161 Identities=14% Similarity=0.141 Sum_probs=88.0
Q ss_pred ccchhhHHHHHHHHHHHHh------C-------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCH
Q 038494 158 FEAFDSRMKLFQDVVEALR------N-------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDV 224 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~------~-------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~ 224 (1209)
...+.|-+...+.+.+.+. + ...+.+-++|++|.|||.||+++++..... |-. +...
T Consensus 241 ~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~--fi~-----v~~~--- 310 (494)
T COG0464 241 LDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSR--FIS-----VKGS--- 310 (494)
T ss_pred eehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCe--EEE-----eeCH---
Confidence 4455555555555554443 1 234578999999999999999999966532 422 2211
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCC-CCcccc------ccccCCc
Q 038494 225 QKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGD-VDEKDR------KQDLRRR 297 (1209)
Q Consensus 225 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~-~~~~~~------~~~~~~s 297 (1209)
++.. +.+ .+.+..++.+...-.+..+..|.+|+++....+..-...... .-.... .....+.
T Consensus 311 -~l~s---k~v-------Gesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v 379 (494)
T COG0464 311 -ELLS---KWV-------GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379 (494)
T ss_pred -HHhc---ccc-------chHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCce
Confidence 1100 001 111455556666555578899999999876433221100000 000000 0011233
Q ss_pred EEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCC
Q 038494 298 TIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGN 339 (1209)
Q Consensus 298 ~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~ 339 (1209)
.||-||-........+ .-...+.+++-+.++..+.|+.+..+
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred EEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 3444554443322111 23468889999999999999999864
No 231
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.08 Score=62.00 Aligned_cols=174 Identities=14% Similarity=0.193 Sum_probs=98.1
Q ss_pred ccchhhHHHHHHHHHHHHhCC-------------CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCH
Q 038494 158 FEAFDSRMKLFQDVVEALRND-------------KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDV 224 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~~-------------~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~ 224 (1209)
++++-|-.+.++.+.+.+.-+ -..-|.++|++|+|||-||.+++.....+ +|+|..+
T Consensus 666 w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP--- 735 (952)
T KOG0735|consen 666 WEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP--- 735 (952)
T ss_pred ceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH---
Confidence 455556666666666665511 13458899999999999999998876543 4666554
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC-------------ccccCCCCCCCCccccc
Q 038494 225 QKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLG-------------LEEIGIPFGDVDEKDRK 291 (1209)
Q Consensus 225 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~-------------~~~l~~~~~~~~~~~~~ 291 (1209)
++ +.+.+|.. ++.++.+..+-+.-+++++.||.+++..- ..++.-.+. |.
T Consensus 736 -El---L~KyIGaS-------Eq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelD-G~----- 798 (952)
T KOG0735|consen 736 -EL---LSKYIGAS-------EQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELD-GA----- 798 (952)
T ss_pred -HH---HHHHhccc-------HHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhc-cc-----
Confidence 12 22333322 56778888888777999999999987520 111111111 10
Q ss_pred cccCCcEEEEeccchhhhccc-C--C-cceEEEcCCCCHHHHHHHHHHHhCC--CCCCCcchHHHHHHHHHhCCChh
Q 038494 292 QDLRRRTIILTSRSKHLLTND-M--N-SQKIFLIEVLSKEEALQFFEKIVGN--SAKASAFQPLADEIVGKCGGLPV 362 (1209)
Q Consensus 292 ~~~~~s~ilvTtR~~~v~~~~-~--~-~~~~~~l~~L~~~e~~~lf~~~~~~--~~~~~~~~~~~~~i~~~~~glPL 362 (1209)
.+..|--|+-.|...+....+ . + -.+.+.-+.-++.|-.++|...+.. ....-++ +.++.+.+|..-
T Consensus 799 Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl----~~~a~~T~g~tg 871 (952)
T KOG0735|consen 799 EGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDL----ECLAQKTDGFTG 871 (952)
T ss_pred cccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccch----HHHhhhcCCCch
Confidence 123566666544444332211 1 2 2233444445666777888776641 1222223 356666666543
No 232
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.22 E-value=0.027 Score=60.41 Aligned_cols=93 Identities=20% Similarity=0.198 Sum_probs=58.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhccc----CCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCC---------CCC-
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKV----FDKVVMAEVTENPDVQKIQDKLASDLDLNFDL---------NDS- 244 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~---------~~~- 244 (1209)
...++.|+|.+|+|||++|.+++........ ...++|++..+.++..++.+ +++..+..... ...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCCH
Confidence 3478999999999999999999865432221 35789999888777655533 34443322110 011
Q ss_pred --hHHHHHHHHHHHhcC-CeEEEEEeCCCcc
Q 038494 245 --KPHRAKQLCQRLTKE-KRVLIILDNIWKK 272 (1209)
Q Consensus 245 --~~~~~~~l~~~l~~~-k~~LlvlDdv~~~ 272 (1209)
.......+.+.+.+. +.-+||+|.+...
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~~ 127 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTAL 127 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHHH
Confidence 122334455555555 7789999998653
No 233
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.19 E-value=0.039 Score=58.47 Aligned_cols=89 Identities=17% Similarity=0.253 Sum_probs=54.3
Q ss_pred HHHHHHHHHhC--CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCC
Q 038494 167 LFQDVVEALRN--DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDS 244 (1209)
Q Consensus 167 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~ 244 (1209)
.+..+.++..+ .....+.++|.+|+|||+||..+++....+ -..++++++ .++...+-..... .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it~------~~l~~~l~~~~~~---~--- 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIITV------ADIMSAMKDTFSN---S--- 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEH------HHHHHHHHHHHhh---c---
Confidence 44445544432 223578999999999999999999988653 235566643 4455544443321 0
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 245 KPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 245 ~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
......+.+.+. +.=+||+||+...
T Consensus 150 -~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 150 -ETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred -cccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 111234555564 3458889999765
No 234
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.19 E-value=0.071 Score=58.61 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=25.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhc
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMED 207 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~ 207 (1209)
....+.|||++|+|||.+|+.++++....
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 34688999999999999999999998653
No 235
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.18 E-value=0.031 Score=59.52 Aligned_cols=49 Identities=24% Similarity=0.215 Sum_probs=37.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcc----cCCEEEEEEcCCCcCHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDK----VFDKVVMAEVTENPDVQKIQ 228 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~s~~~~~~~l~ 228 (1209)
..++.|+|.+|+|||++|.+++....... .-..++|++....++...+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 56999999999999999999987754321 01578999988777765554
No 236
>PRK04132 replication factor C small subunit; Provisional
Probab=96.17 E-value=0.069 Score=66.35 Aligned_cols=157 Identities=11% Similarity=0.080 Sum_probs=95.2
Q ss_pred CCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEe
Q 038494 188 MGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILD 267 (1209)
Q Consensus 188 ~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlD 267 (1209)
+.++||||+|..++++.-.+..-..++-+++++..+...+. ++++.+..... +...+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~---------------~~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIR-EKVKEFARTKP---------------IGGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC---------------cCCCCCEEEEEE
Confidence 88899999999999987432111246777888765555443 33332211100 001245799999
Q ss_pred CCCccc--CccccCCCCCCCCccccccccCCcEEEEeccch-hhhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCC
Q 038494 268 NIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSK-HLLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKAS 344 (1209)
Q Consensus 268 dv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~ 344 (1209)
+++... +...+....-... ..+++|.+|.+. .+..........+.+.+++.++-...+...+.... ..
T Consensus 638 EaD~Lt~~AQnALLk~lEep~--------~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-i~ 708 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFS--------SNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LE 708 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCC--------CCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC-CC
Confidence 999873 3444433322211 455666665554 33332335567999999999999988887764221 11
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHH
Q 038494 345 AFQPLADEIVGKCGGLPVALSTVAN 369 (1209)
Q Consensus 345 ~~~~~~~~i~~~~~glPLai~~~~~ 369 (1209)
-.++....|++.++|-+.....+-.
T Consensus 709 i~~e~L~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 709 LTEEGLQAILYIAEGDMRRAINILQ 733 (846)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1256788999999998755444433
No 237
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.14 E-value=0.13 Score=53.38 Aligned_cols=209 Identities=11% Similarity=0.138 Sum_probs=116.9
Q ss_pred cchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhh----cccCCEEEEEEcCCCc------------
Q 038494 159 EAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVME----DKVFDKVVMAEVTENP------------ 222 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~----~~~f~~~~wv~~s~~~------------ 222 (1209)
....++++....+......++.+-..++|++|.||-|.+..+.+..-. +-.-+...|.+-+..-
T Consensus 13 ~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred hhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 346677777777777666677889999999999999998888776532 1123445566544331
Q ss_pred ---------CHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeE-EEEEeCCCcc--cCccccCCCCCCCCcccc
Q 038494 223 ---------DVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRV-LIILDNIWKK--LGLEEIGIPFGDVDEKDR 290 (1209)
Q Consensus 223 ---------~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~-LlvlDdv~~~--~~~~~l~~~~~~~~~~~~ 290 (1209)
.-..+.++++++......-+. ...++| ++|+-.+++. ++-.++....-...
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~qie~-------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs---- 155 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQIET-------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYS---- 155 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcchhh-------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHh----
Confidence 112233333333322211110 012333 4555555543 11112211111111
Q ss_pred ccccCCcEEEEeccchh-hhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCC-CCCcchHHHHHHHHHhCCChhHHHHHH
Q 038494 291 KQDLRRRTIILTSRSKH-LLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSA-KASAFQPLADEIVGKCGGLPVALSTVA 368 (1209)
Q Consensus 291 ~~~~~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~-~~~~~~~~~~~i~~~~~glPLai~~~~ 368 (1209)
..+|+|+..-+-. +........-.++++..+++|....+.+.+.... .-| ++++++|+++++|.---...+-
T Consensus 156 ----~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllml 229 (351)
T KOG2035|consen 156 ----SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLML 229 (351)
T ss_pred ----cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHH
Confidence 5677776443321 1111123445789999999999999998886322 223 7899999999999743333333
Q ss_pred HHHh--cC---------ChhHHHHHHHHHhcCC
Q 038494 369 NALK--NK---------KLPVWKDALTQLRNSN 390 (1209)
Q Consensus 369 ~~l~--~~---------~~~~w~~~~~~l~~~~ 390 (1209)
..++ +. ...+|+-+..+.....
T Consensus 230 E~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i 262 (351)
T KOG2035|consen 230 EAVRVNNEPFTANSQVIPKPDWEIYIQEIARVI 262 (351)
T ss_pred HHHHhccccccccCCCCCCccHHHHHHHHHHHH
Confidence 3332 11 3468999888766543
No 238
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.11 E-value=0.028 Score=62.00 Aligned_cols=91 Identities=18% Similarity=0.283 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHhC----CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 038494 163 SRMKLFQDVVEALRN----DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLN 238 (1209)
Q Consensus 163 gR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~ 238 (1209)
+|........+++.+ ...+-+.|+|..|+|||.||..+++....+ .+ .+.++.++ +++..+....+..
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~-~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GV-SSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CC-CEEEEEHH------HHHHHHHHHHhcC
Confidence 555555555666652 234678999999999999999999998743 22 34556553 4555555444211
Q ss_pred CCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 239 FDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
......+.+. +-=|||+||+..+
T Consensus 207 ---------~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 207 ---------SVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred ---------cHHHHHHHhc--CCCEEEEecCCCc
Confidence 1233444553 5579999999755
No 239
>PRK09183 transposase/IS protein; Provisional
Probab=96.10 E-value=0.0082 Score=64.77 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
...+.|+|++|+|||+||..+++....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 346789999999999999999887654
No 240
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.09 E-value=0.038 Score=56.02 Aligned_cols=92 Identities=17% Similarity=0.243 Sum_probs=60.2
Q ss_pred cccccchhhHHHHHHHHHHHHh----CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHH
Q 038494 155 AKDFEAFDSRMKLFQDVVEALR----NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDK 230 (1209)
Q Consensus 155 ~~~~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~ 230 (1209)
+.+...++|-+...+.+++--. .....-|.+||.-|+||++|++++.+....+ .-. -|.|... +
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glr--LVEV~k~-d------- 123 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLR--LVEVDKE-D------- 123 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCe--EEEEcHH-H-------
Confidence 3446678888887777776433 3345578899999999999999999998764 222 2333221 0
Q ss_pred HHHHhCCCCCCCCChHHHHHHHHHHHh-cCCeEEEEEeCCCccc
Q 038494 231 LASDLDLNFDLNDSKPHRAKQLCQRLT-KEKRVLIILDNIWKKL 273 (1209)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlvlDdv~~~~ 273 (1209)
....-.+.+.|+ ..+||+|..||..-++
T Consensus 124 ---------------l~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~ 152 (287)
T COG2607 124 ---------------LATLPDLVELLRARPEKFILFCDDLSFEE 152 (287)
T ss_pred ---------------HhhHHHHHHHHhcCCceEEEEecCCCCCC
Confidence 112223444444 3588999999987653
No 241
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.59 Score=52.61 Aligned_cols=173 Identities=16% Similarity=0.159 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhCCC---------ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhC
Q 038494 166 KLFQDVVEALRNDK---------LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLD 236 (1209)
Q Consensus 166 ~~~~~l~~~L~~~~---------~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 236 (1209)
..++++.+++...+ .|--.++|++|.|||++..++++... |+. +=+..+...+-
T Consensus 212 ~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~----ydI-ydLeLt~v~~n------------ 274 (457)
T KOG0743|consen 212 RIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN----YDI-YDLELTEVKLD------------ 274 (457)
T ss_pred HHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC----Cce-EEeeeccccCc------------
Confidence 44556666665321 24457999999999999999998875 432 21222221111
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCC-----------ccccccc----cCCcEE-E
Q 038494 237 LNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVD-----------EKDRKQD----LRRRTI-I 300 (1209)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~-----------~~~~~~~----~~~s~i-l 300 (1209)
. .++++...- ..+-+||+.|++-.-+...-...-..+. ...++.| +.+=|| +
T Consensus 275 ---------~-dLr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIiv 342 (457)
T KOG0743|consen 275 ---------S-DLRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIV 342 (457)
T ss_pred ---------H-HHHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEE
Confidence 1 133333222 3467888888875522111100000000 0000111 112345 4
Q ss_pred EeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHH
Q 038494 301 LTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVANAL 371 (1209)
Q Consensus 301 vTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 371 (1209)
+||-..+....++ .....+.|.-=+.+.-..|+.+..+...+ ..++.+|.+...|.-+.=..++..|
T Consensus 343 FTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~----h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 343 FTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEED----HRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCC----cchhHHHHHHhhcCccCHHHHHHHH
Confidence 5776654332111 23457788888999999999998864332 3455566665566555445555433
No 242
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.04 E-value=0.0033 Score=66.97 Aligned_cols=107 Identities=22% Similarity=0.222 Sum_probs=54.0
Q ss_pred CCeEEEEccCCCCccCCCc------CCCCCccEEEeccCCCcccc--cChhhhcCCCCCcEEEecCcccc-----ccccc
Q 038494 519 KGAIAISIPYGDIQELPER------LECPQLKLLLLLANGDSYLE--ISHLFFEGTEDLKVLSLSGIHFS-----SLSSS 585 (1209)
Q Consensus 519 ~~~r~l~l~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~--~~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~ 585 (1209)
..+|.+....|...+-+.. ...+.|..+.+..|+..... +....|..+++|++|||..|-++ .+...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 4556666655555443321 13456666666665432222 22233456666666666666654 23444
Q ss_pred ccCCCCCcEEeccCcccCCc------ccc-cCCCCCCEEEccCCCCC
Q 038494 586 LGHLINLQTLCLDWCQLEDV------AAI-GQLKKLEILSFRYSDIK 625 (1209)
Q Consensus 586 i~~l~~L~~L~l~~~~l~~l------~~i-~~L~~L~~L~l~~~~~~ 625 (1209)
++.+++|+.|++++|.++.- ..+ ...++|++|.+.+|.++
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 55566666666666654432 111 12345555555555444
No 243
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.04 E-value=0.00077 Score=61.55 Aligned_cols=88 Identities=23% Similarity=0.325 Sum_probs=58.6
Q ss_pred cCCCCCcEEEecCcccccccccccC-CCCCcEEeccCcccCCc-ccccCCCCCCEEEccCCCCCccchhccCCCCCCEEe
Q 038494 564 EGTEDLKVLSLSGIHFSSLSSSLGH-LINLQTLCLDWCQLEDV-AAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLD 641 (1209)
Q Consensus 564 ~~l~~Lr~L~L~~~~i~~lp~~i~~-l~~L~~L~l~~~~l~~l-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~ 641 (1209)
.+..+|...+|++|.++++|..+.. .+.+++|++.+|.+.++ ..+..++.|+.|+++.|.+...|..|-.|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 4556677777777777777766553 34677777777777666 446777777777777777777777776677777776
Q ss_pred ccCCCCCcccC
Q 038494 642 LSNCSSLVVIA 652 (1209)
Q Consensus 642 l~~~~~l~~~~ 652 (1209)
..+ +....++
T Consensus 130 s~~-na~~eid 139 (177)
T KOG4579|consen 130 SPE-NARAEID 139 (177)
T ss_pred CCC-CccccCc
Confidence 665 3343443
No 244
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.02 E-value=0.0056 Score=57.75 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
+|.|.|++|+||||+|+.+++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999998763
No 245
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.01 E-value=0.054 Score=60.36 Aligned_cols=154 Identities=15% Similarity=0.144 Sum_probs=82.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcc---------------------cCCEEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDK---------------------VFDKVVMAEVTENPDVQKIQDKLASDLDLN 238 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~---------------------~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~ 238 (1209)
...+.++|+.|+||||+|..++...-... |.|. .++....... .-+
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~-~~~~p~~~~~----------~~g-- 87 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDF-YEITPLSDEP----------ENG-- 87 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCE-EEEecccccc----------ccc--
Confidence 35688999999999999999998764211 1221 1221100000 000
Q ss_pred CCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccchh-hhcc
Q 038494 239 FDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKH-LLTN 311 (1209)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-v~~~ 311 (1209)
........+.++.+.+.+. .+++-++|+|+++..+ ....+...+.... .+..+|++|.+.. +...
T Consensus 88 ~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~--------~~~~~Ilvth~~~~ll~t 159 (325)
T PRK08699 88 RKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPP--------PQVVFLLVSHAADKVLPT 159 (325)
T ss_pred ccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCc--------CCCEEEEEeCChHhChHH
Confidence 0000112556666666654 2344566678887653 1222211111111 3455777777654 3333
Q ss_pred cCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhH
Q 038494 312 DMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVA 363 (1209)
Q Consensus 312 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 363 (1209)
.......+.+.+++.+++.+.+.+.. . . . .. ..+..++|-|+.
T Consensus 160 i~SRc~~~~~~~~~~~~~~~~L~~~~---~-~-~-~~---~~l~~~~g~p~~ 202 (325)
T PRK08699 160 IKSRCRKMVLPAPSHEEALAYLRERG---V-A-E-PE---ERLAFHSGAPLF 202 (325)
T ss_pred HHHHhhhhcCCCCCHHHHHHHHHhcC---C-C-c-HH---HHHHHhCCChhh
Confidence 33456789999999999998886541 1 1 1 11 123568898854
No 246
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.97 E-value=0.032 Score=62.65 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=56.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC-CcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhc
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE-NPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTK 258 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (1209)
..++.++|+.|+||||++..++.....+.....+..++... .....+-++...+.++.+...... ..........+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~-~~~l~~~l~~l~- 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKD-GGDLQLALAELR- 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCC-cccHHHHHHHhc-
Confidence 46899999999999999999998865332123566665433 234556667777777766543322 122333444554
Q ss_pred CCeEEEEEeCCCcc
Q 038494 259 EKRVLIILDNIWKK 272 (1209)
Q Consensus 259 ~k~~LlvlDdv~~~ 272 (1209)
++ -+|++|..-..
T Consensus 215 ~~-DlVLIDTaG~~ 227 (374)
T PRK14722 215 NK-HMVLIDTIGMS 227 (374)
T ss_pred CC-CEEEEcCCCCC
Confidence 33 56779987543
No 247
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.91 E-value=0.011 Score=65.19 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=40.8
Q ss_pred chhhHHHHHHHHHHHHhC------CCceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 160 AFDSRMKLFQDVVEALRN------DKLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
.++|-++.++++++++.. ...+++.++|++|+||||||+.+++....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 688999999999999872 24578999999999999999999988864
No 248
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.91 E-value=0.033 Score=59.19 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=36.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKI 227 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l 227 (1209)
..++.|+|.+|+|||++|.+++...... -..++|++.. .++.+.+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 5699999999999999999999877643 4678999987 5555544
No 249
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.054 Score=63.30 Aligned_cols=166 Identities=18% Similarity=0.124 Sum_probs=86.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc--CHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhc
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP--DVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTK 258 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~--~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (1209)
.-|.|.|..|+|||+||+++++... +++.-.+.+++++.-. ..+.+++.+-. +...-..
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~------------------vfse~~~ 492 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNN------------------VFSEALW 492 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHH------------------HHHHHHh
Confidence 5688999999999999999999887 4555667777776432 23333322221 1211113
Q ss_pred CCeEEEEEeCCCcccCccccCCCCCCCCccccc----------cccCCcE--EEEeccchhhhccc----CCcceEEEcC
Q 038494 259 EKRVLIILDNIWKKLGLEEIGIPFGDVDEKDRK----------QDLRRRT--IILTSRSKHLLTND----MNSQKIFLIE 322 (1209)
Q Consensus 259 ~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~~----------~~~~~s~--ilvTtR~~~v~~~~----~~~~~~~~l~ 322 (1209)
..+-+|||||++.......-. .-.++....|+ ....+.+ +|.|.....-.... .--..+..+.
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e-~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNE-NGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hCCcEEEEcchhhhhccCccc-CCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 578999999997542100000 00000000000 1123444 33344433222111 1223567788
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCC-hhHHHHH
Q 038494 323 VLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGL-PVALSTV 367 (1209)
Q Consensus 323 ~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLai~~~ 367 (1209)
.+...+-.++++.......... ..+...-+..+|+|. |.-+.++
T Consensus 572 ap~~~~R~~IL~~~~s~~~~~~-~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNLSDI-TMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred CcchhHHHHHHHHHHHhhhhhh-hhHHHHHHHHhcCCccchhHHHH
Confidence 8888887777776654322111 122233366777663 5544444
No 250
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.90 E-value=0.018 Score=73.59 Aligned_cols=106 Identities=21% Similarity=0.283 Sum_probs=61.9
Q ss_pred cchhhHHHHHHHHHHHHhCC---------CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHH
Q 038494 159 EAFDSRMKLFQDVVEALRND---------KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQD 229 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~ 229 (1209)
..++|.+..++.+.+.+... ...++.++|++|+|||++|+.++...... ....+.++++.-.....+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccchH--
Confidence 35789999999999888631 13568899999999999999999876432 123344555442221111
Q ss_pred HHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 230 KLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
.+.++.+..... -+....+...+......+|+||+++..
T Consensus 641 --~~l~g~~~g~~g--~~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 641 --ARLIGAPPGYVG--YEEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred --HHhcCCCCCccC--cccccHHHHHHHcCCCcEEEEeccccC
Confidence 111222211100 111123444444334469999999876
No 251
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.90 E-value=0.026 Score=55.19 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEE
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMA 216 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv 216 (1209)
....+.|+|++|.||||+.+.+|...+.. .+.+|+
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~ 61 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILV 61 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEE
Confidence 34688999999999999999999988764 344454
No 252
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.89 E-value=0.019 Score=63.10 Aligned_cols=87 Identities=17% Similarity=0.178 Sum_probs=56.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCC-----CCCChHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFD-----LNDSKPHRAKQLC 253 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 253 (1209)
..+++-|+|++|+||||||.+++...... -..++|++..+.++.. .++.++.+.+ .....++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34789999999999999999988776543 3567899887766653 3455554321 1122233333343
Q ss_pred HHHhcCCeEEEEEeCCCcc
Q 038494 254 QRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 254 ~~l~~~k~~LlvlDdv~~~ 272 (1209)
..+.++..-+||+|.|...
T Consensus 127 ~li~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAAL 145 (321)
T ss_pred HHhhccCCcEEEEcchhhh
Confidence 3344456789999998654
No 253
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.87 E-value=0.52 Score=54.11 Aligned_cols=37 Identities=30% Similarity=0.366 Sum_probs=28.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEc
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEV 218 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 218 (1209)
..+|.++|..|+||||.|..++...+.+. + .+..|+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G-~-kV~lV~~ 136 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKG-F-KPCLVCA 136 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC-C-CEEEEcC
Confidence 57999999999999999999998776432 2 4455544
No 254
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.011 Score=71.67 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=95.8
Q ss_pred ccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCC-----EEEEEEcCCCcCHHHHHHHHH
Q 038494 158 FEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFD-----KVVMAEVTENPDVQKIQDKLA 232 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~-----~~~wv~~s~~~~~~~l~~~i~ 232 (1209)
...++||++++.++++.|......--.++|.+|+|||++|.-++.+....+-.. .++-.++ .
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~-------------g 235 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL-------------G 235 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH-------------H
Confidence 556889999999999999854434446899999999999999998876543221 1121111 1
Q ss_pred HHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCcc-----------ccCCCCCCCCccccccccCCcEEEE
Q 038494 233 SDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLE-----------EIGIPFGDVDEKDRKQDLRRRTIIL 301 (1209)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~-----------~l~~~~~~~~~~~~~~~~~~s~ilv 301 (1209)
.-..+....... ++.+..+.+++.+.++.+|++|.+...-... -+.+.+.. ..-++|-
T Consensus 236 ~LvAGakyRGeF-EeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR----------GeL~~IG 304 (786)
T COG0542 236 SLVAGAKYRGEF-EERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR----------GELRCIG 304 (786)
T ss_pred HHhccccccCcH-HHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc----------CCeEEEE
Confidence 111112222222 6778888888886668999999987652111 11111111 1234444
Q ss_pred -eccchhh---h--cccCCcceEEEcCCCCHHHHHHHHHHHh
Q 038494 302 -TSRSKHL---L--TNDMNSQKIFLIEVLSKEEALQFFEKIV 337 (1209)
Q Consensus 302 -TtR~~~v---~--~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 337 (1209)
||-++.- - .........+.+..-+.+++..+++-..
T Consensus 305 ATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 305 ATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred eccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 4433321 0 0012456788999999999999987654
No 255
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.85 E-value=0.031 Score=61.81 Aligned_cols=92 Identities=21% Similarity=0.237 Sum_probs=59.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhc----ccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCC---------CChH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMED----KVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLN---------DSKP 246 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~---------~~~~ 246 (1209)
..++-|+|.+|+|||++|.+++-..... ..-..++|++....++++++.+ ++++++.+.... ...+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCHH
Confidence 4688899999999999999987544321 1124789999999888888754 667776543210 1112
Q ss_pred HH---HHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 247 HR---AKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 247 ~~---~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
+. +..+...+.+++--|||+|.+...
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSisal 203 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSIMAL 203 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcchHh
Confidence 22 233333444445568999988543
No 256
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.84 E-value=0.068 Score=57.13 Aligned_cols=93 Identities=23% Similarity=0.337 Sum_probs=59.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-CHHHHHHHHHHHhCCC------CCCCCCh------
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-DVQKIQDKLASDLDLN------FDLNDSK------ 245 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~------~~~~~~~------ 245 (1209)
+...+.|+|.+|+|||||++.+++..+.+ +-+.++++-+.+.. .+.++.+.+...-... ...+...
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34678999999999999999999998753 23466777777654 4556666554431111 0111111
Q ss_pred HHHHHHHHHHHh-c-CCeEEEEEeCCCcc
Q 038494 246 PHRAKQLCQRLT-K-EKRVLIILDNIWKK 272 (1209)
Q Consensus 246 ~~~~~~l~~~l~-~-~k~~LlvlDdv~~~ 272 (1209)
....-.+-+++. + ++.+|+++||+...
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 112234555554 3 79999999998654
No 257
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.84 E-value=0.21 Score=53.55 Aligned_cols=169 Identities=18% Similarity=0.208 Sum_probs=97.1
Q ss_pred chhhHHHHHHHHHHHHh----CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-----CHHHHHHH
Q 038494 160 AFDSRMKLFQDVVEALR----NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-----DVQKIQDK 230 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-----~~~~l~~~ 230 (1209)
.++|-.++..++..++. .+....+.|+|+.|.|||+|......+.+. .=+..+-|...... .+..+.++
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~--~~E~~l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQE--NGENFLLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHh--cCCeEEEEEECccchhhHHHHHHHHHH
Confidence 56788888888888776 355678889999999999998888877321 11233334443322 23344444
Q ss_pred HHHHhCCCCCCCCChHHHHHHHHHHHhc-----CCeEEEEEeCCCcccCc-------cccCCCCCCCCccccccccCCcE
Q 038494 231 LASDLDLNFDLNDSKPHRAKQLCQRLTK-----EKRVLIILDNIWKKLGL-------EEIGIPFGDVDEKDRKQDLRRRT 298 (1209)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~-----~k~~LlvlDdv~~~~~~-------~~l~~~~~~~~~~~~~~~~~~s~ 298 (1209)
+..++.........-.+....+...|.. +-+++.|+|.++-.... .-+........ +-+-
T Consensus 103 l~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~--------Pici 174 (408)
T KOG2228|consen 103 LALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARA--------PICI 174 (408)
T ss_pred HHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCC--------CeEE
Confidence 4444333222222224556677777763 23488888888654211 11111111111 5667
Q ss_pred EEEeccchhhh------cccCCcceEEEcCCCCHHHHHHHHHHHhC
Q 038494 299 IILTSRSKHLL------TNDMNSQKIFLIEVLSKEEALQFFEKIVG 338 (1209)
Q Consensus 299 ilvTtR~~~v~------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 338 (1209)
|-+|||-...- ......-.++-++.++-++-.+++++...
T Consensus 175 ig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 175 IGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred EEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 78899874321 11122234666777888888888888763
No 258
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.82 E-value=0.051 Score=54.36 Aligned_cols=40 Identities=38% Similarity=0.464 Sum_probs=31.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcC
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPD 223 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~ 223 (1209)
++.|+|.+|+||||++..++...... -..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcchH
Confidence 36899999999999999999887642 45788888766543
No 259
>PTZ00494 tuzin-like protein; Provisional
Probab=95.82 E-value=0.44 Score=53.21 Aligned_cols=162 Identities=12% Similarity=0.069 Sum_probs=96.8
Q ss_pred ccchhhHHHHHHHHHHHHhC---CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHH
Q 038494 158 FEAFDSRMKLFQDVVEALRN---DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASD 234 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~ 234 (1209)
...++.|+++-..+.+.|.+ ...+++++.|.-|.||++|.+....+... ..++|++.... +-++.+.+.
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~E---DtLrsVVKA 441 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTE---DTLRSVVRA 441 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCc---chHHHHHHH
Confidence 55788999887777777763 34689999999999999999998877654 25678887664 456788899
Q ss_pred hCCCCCCC-CChHHHHH-HH---HHHHhcCCeEEEEE--eCCCccc-CccccCCCCCCCCccccccccCCcEEEEeccch
Q 038494 235 LDLNFDLN-DSKPHRAK-QL---CQRLTKEKRVLIIL--DNIWKKL-GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSK 306 (1209)
Q Consensus 235 l~~~~~~~-~~~~~~~~-~l---~~~l~~~k~~Llvl--Ddv~~~~-~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~ 306 (1209)
++.+..+. .+..+-+. .. .... .++.=+||+ -+-.+.. ...+. ..+.... +-|.|++----+
T Consensus 442 LgV~nve~CGDlLdFI~ea~~~A~~~~-~g~~P~lVlkLREGssL~RVYnE~-vaLacDr--------RlCHvv~EVplE 511 (664)
T PTZ00494 442 LGVSNVEVCGDLLGFVEEAMRGATVKA-SDGVPFLVMRLREGSDLGRVYGEV-VSLVSDC--------QACHIVLAVPMK 511 (664)
T ss_pred hCCCChhhhccHHHHHHHHHHHHHHhc-CCCCCEEEEEeccCCcHHHHHHHH-HHHHccc--------hhheeeeechHh
Confidence 98765332 22111111 11 1112 234344443 2222211 01110 0111111 456677654443
Q ss_pred hhh--cccCCcceEEEcCCCCHHHHHHHHHHHh
Q 038494 307 HLL--TNDMNSQKIFLIEVLSKEEALQFFEKIV 337 (1209)
Q Consensus 307 ~v~--~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 337 (1209)
... ......-..|-+++++.++|.++-.+..
T Consensus 512 SLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 512 ALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 321 2233455789999999999999887664
No 260
>PRK09354 recA recombinase A; Provisional
Probab=95.82 E-value=0.044 Score=60.78 Aligned_cols=86 Identities=17% Similarity=0.171 Sum_probs=57.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCC-----CCCChHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFD-----LNDSKPHRAKQLCQ 254 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 254 (1209)
.+++-|+|++|+||||||.+++...... -..++|++..+.++.. .++.++.+.+ .....++....+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4688999999999999999998776543 3578899988877753 3555554321 11222333333333
Q ss_pred HHhcCCeEEEEEeCCCcc
Q 038494 255 RLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 255 ~l~~~k~~LlvlDdv~~~ 272 (1209)
.+.++..-+||+|-|-..
T Consensus 133 li~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 133 LVRSGAVDLIVVDSVAAL 150 (349)
T ss_pred HhhcCCCCEEEEeChhhh
Confidence 344556789999998654
No 261
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.81 E-value=0.025 Score=71.97 Aligned_cols=106 Identities=19% Similarity=0.236 Sum_probs=60.6
Q ss_pred cchhhHHHHHHHHHHHHhC-------CC--ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHH
Q 038494 159 EAFDSRMKLFQDVVEALRN-------DK--LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQD 229 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~~-------~~--~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~ 229 (1209)
..++|.+..++.+.+.+.. .. ..++.++|+.|+|||++|+.+++..-.. -...+-++.++-.....+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccH--
Confidence 4577999999999888751 11 2456799999999999999999876422 122344444432221111
Q ss_pred HHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 230 KLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
.+.++.+..... -+....+...+......+|++|+++..
T Consensus 585 --~~l~g~~~gyvg--~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 585 --SKLIGSPPGYVG--YNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred --HHhcCCCCcccC--cCccchHHHHHHhCCCeEEEECChhhC
Confidence 111222111000 011123445555434469999999876
No 262
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.79 E-value=0.05 Score=59.65 Aligned_cols=87 Identities=22% Similarity=0.313 Sum_probs=51.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-CHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhc
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-DVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTK 258 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (1209)
.++|+|+|++|+||||++..++.....+..-..+..++..... ...+.+....+.++.+...... ........+.+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~-~~~l~~~l~~~~- 271 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARD-PKELRKALDRLR- 271 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCC-HHHHHHHHHHcc-
Confidence 4699999999999999999999877643111245666654321 2333344445555655433333 333444445553
Q ss_pred CCeEEEEEeCC
Q 038494 259 EKRVLIILDNI 269 (1209)
Q Consensus 259 ~k~~LlvlDdv 269 (1209)
..=+|++|..
T Consensus 272 -~~d~vliDt~ 281 (282)
T TIGR03499 272 -DKDLILIDTA 281 (282)
T ss_pred -CCCEEEEeCC
Confidence 2357777764
No 263
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.75 E-value=0.024 Score=62.28 Aligned_cols=86 Identities=20% Similarity=0.178 Sum_probs=55.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCC-----CCCChHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFD-----LNDSKPHRAKQLCQ 254 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 254 (1209)
.+++-|+|++|+||||||.+++...... -..++|++..+.++.. .++.++.+.+ .....++....+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 5688999999999999999998776543 3568899987776653 3444444321 11122333333333
Q ss_pred HHhcCCeEEEEEeCCCcc
Q 038494 255 RLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 255 ~l~~~k~~LlvlDdv~~~ 272 (1209)
.+.++..-+||+|-|...
T Consensus 128 li~s~~~~lIVIDSvaal 145 (325)
T cd00983 128 LVRSGAVDLIVVDSVAAL 145 (325)
T ss_pred HHhccCCCEEEEcchHhh
Confidence 334456789999998644
No 264
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.70 E-value=0.025 Score=57.43 Aligned_cols=37 Identities=24% Similarity=0.476 Sum_probs=29.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEE
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAE 217 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 217 (1209)
...+|.+.|+.|.||||+|+.+++..... +..++++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEe
Confidence 34689999999999999999999888643 55555553
No 265
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.014 Score=55.26 Aligned_cols=30 Identities=43% Similarity=0.556 Sum_probs=25.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCC
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFD 211 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~ 211 (1209)
--|.|.|++|+||||+++.+++..+.+. |.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g-~k 35 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG-YK 35 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC-ce
Confidence 4689999999999999999999998754 44
No 266
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.49 Score=48.19 Aligned_cols=93 Identities=20% Similarity=0.242 Sum_probs=59.5
Q ss_pred cchhhHHHHHHHHHHHHh-------------CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHH
Q 038494 159 EAFDSRMKLFQDVVEALR-------------NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQ 225 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~ 225 (1209)
.++-|-+-.++++.++.+ =+..+-|.++|++|+|||-||++|++.-... | +.|-.. +
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~--f-----irvvgs---e 224 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA--F-----IRVVGS---E 224 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh--e-----eeeccH---H
Confidence 345566766777776654 1345678899999999999999999876643 4 322211 1
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 226 KIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 226 ~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
. .-+.+|.. ...++.+.+--+++.+-+|.+|.++..
T Consensus 225 -f---vqkylgeg-------prmvrdvfrlakenapsiifideidai 260 (408)
T KOG0727|consen 225 -F---VQKYLGEG-------PRMVRDVFRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred -H---HHHHhccC-------cHHHHHHHHHHhccCCcEEEeehhhhH
Confidence 1 12223321 345566666556678899999998765
No 267
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.68 E-value=0.017 Score=58.25 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=45.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcC
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKE 259 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 259 (1209)
..-+.++|..|+|||.||..+++....+. ..+.|+++ .+++..+-. ... .. ......+.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g--~~v~f~~~------~~L~~~l~~----~~~-~~----~~~~~~~~l~-- 107 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKG--YSVLFITA------SDLLDELKQ----SRS-DG----SYEELLKRLK-- 107 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEH------HHHHHHHHC----CHC-CT----THCHHHHHHH--
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCC--cceeEeec------Cceeccccc----ccc-cc----chhhhcCccc--
Confidence 45799999999999999999998876532 24566654 344444432 111 11 1223455665
Q ss_pred CeEEEEEeCCCcc
Q 038494 260 KRVLIILDNIWKK 272 (1209)
Q Consensus 260 k~~LlvlDdv~~~ 272 (1209)
+-=|||+||+-..
T Consensus 108 ~~dlLilDDlG~~ 120 (178)
T PF01695_consen 108 RVDLLILDDLGYE 120 (178)
T ss_dssp TSSCEEEETCTSS
T ss_pred cccEeccccccee
Confidence 3468889999765
No 268
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.66 E-value=0.2 Score=61.82 Aligned_cols=177 Identities=16% Similarity=0.158 Sum_probs=90.2
Q ss_pred ccchhhHHHHHHHHHHH---HhCC---------CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHH
Q 038494 158 FEAFDSRMKLFQDVVEA---LRND---------KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQ 225 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~---L~~~---------~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~ 225 (1209)
...+.|.+..++++.+. +.+. -.+-|.++|++|+|||++|+.++...... | +.++.++
T Consensus 151 ~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~--f---~~is~~~----- 220 (644)
T PRK10733 151 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSD----- 220 (644)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC--E---EEEehHH-----
Confidence 44556666555554443 3221 12358999999999999999998876532 2 2222221
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCccc------c------ccc
Q 038494 226 KIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKD------R------KQD 293 (1209)
Q Consensus 226 ~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~------~------~~~ 293 (1209)
+... . .+. .....+.+........+.+|++|+++....-..- ....+.... . ...
T Consensus 221 -~~~~-~--~g~-------~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~--~~~g~~~~~~~~ln~lL~~mdg~~~ 287 (644)
T PRK10733 221 -FVEM-F--VGV-------GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGA--GLGGGHDEREQTLNQMLVEMDGFEG 287 (644)
T ss_pred -hHHh-h--hcc-------cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCC--CCCCCchHHHHHHHHHHHhhhcccC
Confidence 1110 0 010 0233344444444457899999999765210000 000000000 0 001
Q ss_pred cCCcEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCC
Q 038494 294 LRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGG 359 (1209)
Q Consensus 294 ~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g 359 (1209)
..+.-+|.||...+...... .....+.++..+.++-.+++..+.......++. ....+++.+.|
T Consensus 288 ~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~--d~~~la~~t~G 355 (644)
T PRK10733 288 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPG 355 (644)
T ss_pred CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcC--CHHHHHhhCCC
Confidence 13444555776655432222 234678888888888888888877533222111 12345666555
No 269
>PRK04296 thymidine kinase; Provisional
Probab=95.65 E-value=0.013 Score=60.01 Aligned_cols=111 Identities=16% Similarity=0.044 Sum_probs=62.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCC--CCChHHHHHHHHHHHhc
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDL--NDSKPHRAKQLCQRLTK 258 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 258 (1209)
.++.|+|..|.||||+|..++.+.... -..++.+. ..++.......++++++..... .....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 477899999999999999999887643 23344442 1112222233456666543322 1121233333333 33
Q ss_pred CCeEEEEEeCCCcc--cCccccCCCCCCCCccccccccCCcEEEEeccchh
Q 038494 259 EKRVLIILDNIWKK--LGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKH 307 (1209)
Q Consensus 259 ~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 307 (1209)
++.-+||+|.+... ++..++...+. ..|..|++|.+..+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~----------~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLD----------DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHH----------HcCCeEEEEecCcc
Confidence 45568999999643 11222222111 16778999988854
No 270
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.64 E-value=0.029 Score=71.30 Aligned_cols=106 Identities=19% Similarity=0.235 Sum_probs=60.1
Q ss_pred cchhhHHHHHHHHHHHHhC-------CC--ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHH
Q 038494 159 EAFDSRMKLFQDVVEALRN-------DK--LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQD 229 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~~-------~~--~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~ 229 (1209)
..++|.+..++.+.+.+.. .. ..++.++|+.|+|||++|+.+++..... -...+.++++.-.. ..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~-~~--- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFME-KH--- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhh-hh---
Confidence 3577988888888888762 11 2478899999999999999999766422 12334555543211 11
Q ss_pred HHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 230 KLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
.+.+-+|.+..... .+....+...+.....-+|+|||++..
T Consensus 642 ~~~~LiG~~pgy~g--~~~~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 642 SVSRLVGAPPGYVG--YEEGGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred hHHHHhCCCCcccc--cchhHHHHHHHHhCCCCeEEEeehhhC
Confidence 11122332211111 111122334443334479999999865
No 271
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.64 E-value=0.27 Score=53.89 Aligned_cols=162 Identities=9% Similarity=0.075 Sum_probs=92.3
Q ss_pred HHHHHHHHhCCC-ceEEEEEcCCCChHHHHHHHHHHHHh--------hcccCCEEEEEEc-CCCcCHHHHHHHHHHHhCC
Q 038494 168 FQDVVEALRNDK-LNIIGVHGMGGVGKTTLVKQIAKQVM--------EDKVFDKVVMAEV-TENPDVQKIQDKLASDLDL 237 (1209)
Q Consensus 168 ~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~~~~~~~--------~~~~f~~~~wv~~-s~~~~~~~l~~~i~~~l~~ 237 (1209)
++.+...+..++ ..+..++|..|.||+++|..+++..- ...|.+-+.++.. +....+
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~v------------- 71 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSK------------- 71 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCH-------------
Confidence 344555555544 45667999999999999999998872 2223323333322 112222
Q ss_pred CCCCCCChHHHHHHHHHHHh-----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccc-hhhh
Q 038494 238 NFDLNDSKPHRAKQLCQRLT-----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRS-KHLL 309 (1209)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~-----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~-~~v~ 309 (1209)
+.++.+.+.+. ++.+-++|+||++... ....+...+-... .++.+|++|.+ ..+.
T Consensus 72 ---------d~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp--------~~t~~il~~~~~~kll 134 (299)
T PRK07132 72 ---------SEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPP--------KDTYFLLTTKNINKVL 134 (299)
T ss_pred ---------HHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCC--------CCeEEEEEeCChHhCh
Confidence 23333333332 1467788999987653 2333332222222 45666655543 4444
Q ss_pred cccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHH
Q 038494 310 TNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALST 366 (1209)
Q Consensus 310 ~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 366 (1209)
.+.......+++.++++++..+.+... + . .++.+..++...+|.=-|+..
T Consensus 135 ~TI~SRc~~~~f~~l~~~~l~~~l~~~-~---~---~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 135 PTIVSRCQVFNVKEPDQQKILAKLLSK-N---K---EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHHhCeEEEECCCCCHHHHHHHHHHc-C---C---ChhHHHHHHHHcCCHHHHHHH
Confidence 333456789999999999998887654 1 1 124466666666763344444
No 272
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.62 E-value=0.058 Score=58.07 Aligned_cols=92 Identities=26% Similarity=0.246 Sum_probs=58.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhc----ccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCC---------CCCh-
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMED----KVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDL---------NDSK- 245 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~---------~~~~- 245 (1209)
..++=|+|.+|+|||+||.+++-..... ..-..++|++-...+..+++. +|++..+.+... ..+.
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 3588899999999999999988665321 122479999999999888875 466665432110 0111
Q ss_pred --HHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 246 --PHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 246 --~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
...+..+...+.+.+--|||+|.+-..
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSHH
T ss_pred HHHHHHHHHHhhccccceEEEEecchHHH
Confidence 122223333344456679999998543
No 273
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.60 E-value=0.07 Score=59.51 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=58.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhh----cccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCC---------CChH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVME----DKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLN---------DSKP 246 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~----~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~---------~~~~ 246 (1209)
..++-|+|.+|+|||+|+.+++-.... ...-..++|++....|.++++.+ +++.++.+.... .+.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~e 204 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTYE 204 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCHH
Confidence 467889999999999999999754432 11124789999999999888755 667776543211 1112
Q ss_pred HHH---HHHHHHHhcCCeEEEEEeCCCc
Q 038494 247 HRA---KQLCQRLTKEKRVLIILDNIWK 271 (1209)
Q Consensus 247 ~~~---~~l~~~l~~~k~~LlvlDdv~~ 271 (1209)
++. ..+...+.+.+--|||+|.+-.
T Consensus 205 ~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 205 HQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 222 2232334334556889998754
No 274
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.59 E-value=0.084 Score=61.36 Aligned_cols=89 Identities=19% Similarity=0.277 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC-CcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE-NPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT 257 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 257 (1209)
...+|+|+|.+|+||||++..++.....+.....+..++... .....+.++...+.++........ ........+.+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d-~~~L~~aL~~l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADS-AESLLDLLERLR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCc-HHHHHHHHHHhc
Confidence 357999999999999999999988765432233455555432 112233333444445443332222 233444455553
Q ss_pred cCCeEEEEEeCCC
Q 038494 258 KEKRVLIILDNIW 270 (1209)
Q Consensus 258 ~~k~~LlvlDdv~ 270 (1209)
..-+|++|..-
T Consensus 428 --~~DLVLIDTaG 438 (559)
T PRK12727 428 --DYKLVLIDTAG 438 (559)
T ss_pred --cCCEEEecCCC
Confidence 34588888874
No 275
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.59 E-value=0.02 Score=70.93 Aligned_cols=102 Identities=18% Similarity=0.204 Sum_probs=59.7
Q ss_pred chhhHHHHHHHHHHHHhC---------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHH
Q 038494 160 AFDSRMKLFQDVVEALRN---------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDK 230 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~ 230 (1209)
.++|.++.++.+.+.+.. .....+.++|++|+|||.+|+.++..... ..+.+++++-.... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechhhcccc----c
Confidence 467888888888888761 12356889999999999999999887732 22344544322111 1
Q ss_pred HHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 231 LASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
+.+-+|.+..... ......+.+.+......+|+||+++..
T Consensus 530 ~~~LiG~~~gyvg--~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPPGYVG--FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCCCccc--ccccchHHHHHHhCCCcEEEeccHhhh
Confidence 2222232211100 011112333444345579999999977
No 276
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.56 E-value=0.37 Score=54.62 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhC---CCceEEEEEcCCCChHHHHHHHHHHHHhhc
Q 038494 165 MKLFQDVVEALRN---DKLNIIGVHGMGGVGKTTLVKQIAKQVMED 207 (1209)
Q Consensus 165 ~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~ 207 (1209)
+...+.|.+.+.+ ....+|+|.|.=|+|||++.+.+.+..+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3445667777764 456899999999999999999999888765
No 277
>PRK06696 uridine kinase; Validated
Probab=95.51 E-value=0.023 Score=60.11 Aligned_cols=44 Identities=23% Similarity=0.442 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHh---CCCceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 163 SRMKLFQDVVEALR---NDKLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 163 gR~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
.|++.+++|.+.+. .+...+|+|.|.+|.||||+|+.+++....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47777888888875 355679999999999999999999988754
No 278
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.00092 Score=68.46 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=23.9
Q ss_pred CCCCCcEEeccCcccCCcccccCCCCCCEEEccCCCCCccch--hccCCCCCCEEeccC
Q 038494 588 HLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPL--EIGQLAQLQLLDLSN 644 (1209)
Q Consensus 588 ~l~~L~~L~l~~~~l~~l~~i~~L~~L~~L~l~~~~~~~lp~--~i~~L~~L~~L~l~~ 644 (1209)
+++.|++|.|+-|.|+.+..+..+++|+.|.|+.|.|..+-. -+.++++|++|.+..
T Consensus 39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 344444444444444444444444444444444444333321 133444444444443
No 279
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.069 Score=55.69 Aligned_cols=94 Identities=19% Similarity=0.195 Sum_probs=63.8
Q ss_pred ccchhhHHHHHHHHHHHHh---------C---CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHH
Q 038494 158 FEAFDSRMKLFQDVVEALR---------N---DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQ 225 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~---------~---~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~ 225 (1209)
+.++.|-+..++.|.++.. . ..-+-|.++|++|.||+-||++|+...... |.+||...
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-------FFSvSSSD--- 201 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-------FFSVSSSD--- 201 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-------eEEeehHH---
Confidence 5566777777788877654 1 124678999999999999999999887632 34444432
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 226 KIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 226 ~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
+... .+| +.+..+..+.+--++.|+-+|.+|.++..
T Consensus 202 -LvSK---WmG-------ESEkLVknLFemARe~kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 202 -LVSK---WMG-------ESEKLVKNLFEMARENKPSIIFIDEIDSL 237 (439)
T ss_pred -HHHH---Hhc-------cHHHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence 2111 111 12556666666666789999999999754
No 280
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.40 E-value=0.06 Score=60.13 Aligned_cols=91 Identities=16% Similarity=0.129 Sum_probs=57.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhc----ccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCC---------CChH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMED----KVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLN---------DSKP 246 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~---------~~~~ 246 (1209)
..++-|+|.+|+|||++|..++-..... ..-..++|++....+.++++ .++++.++.+.... ...+
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~~e 201 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYNTD 201 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCCHH
Confidence 4688899999999999999888544321 11237999999999988876 45677766543211 1112
Q ss_pred HHH---HHHHHHHhcCCeEEEEEeCCCc
Q 038494 247 HRA---KQLCQRLTKEKRVLIILDNIWK 271 (1209)
Q Consensus 247 ~~~---~~l~~~l~~~k~~LlvlDdv~~ 271 (1209)
+.. ..+...+...+.-|||+|-+..
T Consensus 202 ~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 202 HQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 222 2222223344567888888754
No 281
>PRK06921 hypothetical protein; Provisional
Probab=95.37 E-value=0.076 Score=57.50 Aligned_cols=72 Identities=24% Similarity=0.332 Sum_probs=45.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhc
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTK 258 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (1209)
....+.++|..|+|||+||..+++....+. -..++|++.. +++..+...+ .......+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~~------~l~~~l~~~~-----------~~~~~~~~~~~- 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPFV------EGFGDLKDDF-----------DLLEAKLNRMK- 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEHH------HHHHHHHHHH-----------HHHHHHHHHhc-
Confidence 356789999999999999999999876431 2345666642 3333332221 11122334443
Q ss_pred CCeEEEEEeCCC
Q 038494 259 EKRVLIILDNIW 270 (1209)
Q Consensus 259 ~k~~LlvlDdv~ 270 (1209)
+--|||+||+.
T Consensus 177 -~~dlLiIDDl~ 187 (266)
T PRK06921 177 -KVEVLFIDDLF 187 (266)
T ss_pred -CCCEEEEeccc
Confidence 44699999993
No 282
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.35 E-value=0.11 Score=55.50 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=36.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKL 231 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i 231 (1209)
...++.|.|.+|+|||++|.++......+ -..++|++..+ +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHHH
Confidence 35789999999999999999988765432 35678888755 445555543
No 283
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.30 E-value=0.074 Score=52.60 Aligned_cols=27 Identities=37% Similarity=0.614 Sum_probs=23.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhc
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMED 207 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~ 207 (1209)
+.|.+.|.+|+||||+|+++++..+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 467899999999999999999888754
No 284
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.30 E-value=0.17 Score=56.61 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=51.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCC-cCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTEN-PDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT 257 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 257 (1209)
+.++|+++|.+|+||||++..++.....+. ..+..++.... ....+-++..++..+.+...... ...+......+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~G--kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d-~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRD-EAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCC-HHHHHHHHHHHH
Confidence 347999999999999999999998775432 23455554322 12333334445555555432333 233334444444
Q ss_pred c-CCeEEEEEeCCCc
Q 038494 258 K-EKRVLIILDNIWK 271 (1209)
Q Consensus 258 ~-~k~~LlvlDdv~~ 271 (1209)
. .+.=+|++|-.-.
T Consensus 317 ~~~~~DvVLIDTaGR 331 (436)
T PRK11889 317 EEARVDYILIDTAGK 331 (436)
T ss_pred hccCCCEEEEeCccc
Confidence 2 1235677887644
No 285
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=0.0015 Score=66.98 Aligned_cols=80 Identities=28% Similarity=0.213 Sum_probs=62.0
Q ss_pred CCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCc---ccccCCCCCCEE
Q 038494 541 PQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDV---AAIGQLKKLEIL 617 (1209)
Q Consensus 541 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l---~~i~~L~~L~~L 617 (1209)
.+.+-|++.+++ +..+ +++.+++.|.+|.|+-|.|+.|.. +.+|++|+.|+|+.|.|.++ .-+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~--L~DI--sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCG--LDDI--SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCC--ccHH--HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 344455555553 2211 346789999999999999998854 88999999999999998887 678899999999
Q ss_pred EccCCCCC
Q 038494 618 SFRYSDIK 625 (1209)
Q Consensus 618 ~l~~~~~~ 625 (1209)
.|..|...
T Consensus 94 WL~ENPCc 101 (388)
T KOG2123|consen 94 WLDENPCC 101 (388)
T ss_pred hhccCCcc
Confidence 99887543
No 286
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.19 E-value=0.14 Score=54.49 Aligned_cols=30 Identities=30% Similarity=0.575 Sum_probs=26.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhhc
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQVMED 207 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~ 207 (1209)
....+|+|.|..|.|||||++.++......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 456799999999999999999999887754
No 287
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.19 E-value=0.074 Score=59.12 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=55.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhc---c-cCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCC---------CCChH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMED---K-VFDKVVMAEVTENPDVQKIQDKLASDLDLNFDL---------NDSKP 246 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~---~-~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~---------~~~~~ 246 (1209)
..++.|+|.+|+|||+++..++...... . .-..++|++....+...++ .++++.++..... ....+
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~~~ 174 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYNTD 174 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCChH
Confidence 5789999999999999999988643221 1 1236799999888877764 4456665543211 01112
Q ss_pred HH---HHHHHHHHhcCCeEEEEEeCCCc
Q 038494 247 HR---AKQLCQRLTKEKRVLIILDNIWK 271 (1209)
Q Consensus 247 ~~---~~~l~~~l~~~k~~LlvlDdv~~ 271 (1209)
+. +..+...+...+.-|||+|-+-.
T Consensus 175 ~~~~~l~~~~~~~~~~~~~LvVIDSI~a 202 (316)
T TIGR02239 175 HQLQLLQQAAAMMSESRFALLIVDSATA 202 (316)
T ss_pred HHHHHHHHHHHhhccCCccEEEEECcHH
Confidence 22 22222223334566888888754
No 288
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.18 E-value=0.11 Score=58.18 Aligned_cols=57 Identities=26% Similarity=0.283 Sum_probs=42.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhccc----CCEEEEEEcCCCcCHHHHHHHHHHHhCC
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKV----FDKVVMAEVTENPDVQKIQDKLASDLDL 237 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~s~~~~~~~l~~~i~~~l~~ 237 (1209)
..++-|+|.+|+|||++|.+++........ =..++|++..+.+++.++.+ +++.++.
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 568889999999999999999876542211 14789999998888877654 4455543
No 289
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.17 E-value=0.0036 Score=57.33 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=47.2
Q ss_pred cChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCc-ccccCCCCCCEEEccCCCCCccchh
Q 038494 558 ISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDV-AAIGQLKKLEILSFRYSDIKQLPLE 630 (1209)
Q Consensus 558 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l-~~i~~L~~L~~L~l~~~~~~~lp~~ 630 (1209)
.|..+-.+++.+..|++++|.+.++|..+..++.||.|+++.|++... .-+..|.+|-+|+..++....+|-.
T Consensus 68 fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 68 FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 344444455566667777777777777777777777777777776555 5555677777777776666555543
No 290
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.15 E-value=0.084 Score=55.78 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=33.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcC
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPD 223 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~ 223 (1209)
...++.|.|.+|+||||+|.+++.....+ -..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 35789999999999999999999877543 34678887765543
No 291
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.029 Score=59.22 Aligned_cols=28 Identities=36% Similarity=0.514 Sum_probs=25.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhc
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMED 207 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~ 207 (1209)
-++|.++|++|.|||+|+++.++...++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 3789999999999999999999998663
No 292
>PRK14974 cell division protein FtsY; Provisional
Probab=95.13 E-value=0.26 Score=54.96 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=52.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc--CHHHHHHHHHHHhCCCCCCC---CChHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP--DVQKIQDKLASDLDLNFDLN---DSKPHRAKQLC 253 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~--~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~l~ 253 (1209)
+..+|.++|++|+||||.+..++...... .+ .++.+.. +.+ ...+-++..++.++.+.... .+....+....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 35799999999999999999998877643 23 3444443 332 23344566677777554221 12222222222
Q ss_pred HHHhcCCeEEEEEeCCCcc
Q 038494 254 QRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 254 ~~l~~~k~~LlvlDdv~~~ 272 (1209)
+.......-+|++|..-..
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 2222222238899987654
No 293
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.12 E-value=0.11 Score=58.31 Aligned_cols=57 Identities=26% Similarity=0.283 Sum_probs=42.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcc----cCCEEEEEEcCCCcCHHHHHHHHHHHhCC
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDK----VFDKVVMAEVTENPDVQKIQDKLASDLDL 237 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~s~~~~~~~l~~~i~~~l~~ 237 (1209)
..++-|+|.+|+|||++|.+++....... .-..++||+..+.++..++. ++++.++.
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 46889999999999999999987754211 11379999999888887764 44555543
No 294
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.10 E-value=0.11 Score=52.53 Aligned_cols=88 Identities=20% Similarity=0.252 Sum_probs=46.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCC-cCHHHHHHHHHHHhCCCCCC---CCChHHHHHHHHHHHh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTEN-PDVQKIQDKLASDLDLNFDL---NDSKPHRAKQLCQRLT 257 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~l~~~l~ 257 (1209)
++.++|++|+||||+++.++....... ..++.++.... ....+.+...++..+.+... ..+..+..........
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g--~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG--KKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999998876431 23444554322 12333344445544432111 1222333333333333
Q ss_pred cCCeEEEEEeCCCc
Q 038494 258 KEKRVLIILDNIWK 271 (1209)
Q Consensus 258 ~~k~~LlvlDdv~~ 271 (1209)
....-++|+|..-.
T Consensus 80 ~~~~d~viiDt~g~ 93 (173)
T cd03115 80 EENFDVVIVDTAGR 93 (173)
T ss_pred hCCCCEEEEECccc
Confidence 22333566777543
No 295
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.09 E-value=0.03 Score=64.36 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=41.3
Q ss_pred cchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCC
Q 038494 159 EAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFD 211 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~ 211 (1209)
..|+||++.++.+...+..++ -|.|.|++|+|||++|+.++........|.
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 468899999999998886543 678999999999999999998765433443
No 296
>PTZ00035 Rad51 protein; Provisional
Probab=95.07 E-value=0.12 Score=58.00 Aligned_cols=91 Identities=19% Similarity=0.213 Sum_probs=56.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhh---c-ccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCC---------CCChH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVME---D-KVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDL---------NDSKP 246 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~---~-~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~---------~~~~~ 246 (1209)
..++.|+|.+|+|||+++..++-.... . ..-..++|++....++.+++ .++++.++..... ....+
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~e 196 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNHE 196 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCHH
Confidence 578999999999999999998765431 0 11246789998887777774 4456665543211 11112
Q ss_pred HHHH---HHHHHHhcCCeEEEEEeCCCc
Q 038494 247 HRAK---QLCQRLTKEKRVLIILDNIWK 271 (1209)
Q Consensus 247 ~~~~---~l~~~l~~~k~~LlvlDdv~~ 271 (1209)
+... .+...+..++--|||+|-+..
T Consensus 197 ~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 197 HQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 2222 223333344567899998854
No 297
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.05 E-value=0.12 Score=54.73 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=35.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhC
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLD 236 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 236 (1209)
..++.|.|.+|+||||+|.+++.....+. ..+++++... +..++++.+ .+++
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e~--~~~~~~~~~-~~~g 75 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQL--TTTEFIKQM-MSLG 75 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCC--CHHHHHHHH-HHhC
Confidence 45899999999999999988777654322 3456666333 456666665 3344
No 298
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.03 E-value=0.18 Score=55.37 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=41.6
Q ss_pred chhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHH
Q 038494 160 AFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQ 228 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~ 228 (1209)
.|+=+.+....+..++..+ +.|.|.|.+|+||||+|+.++...... .+.|.++...+..++.
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~Dli 107 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRIDLV 107 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhhcC
Confidence 3443444556677777543 468999999999999999999988632 2355555555554443
No 299
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.02 E-value=0.21 Score=55.72 Aligned_cols=99 Identities=23% Similarity=0.290 Sum_probs=58.9
Q ss_pred HHHHHHHHhCC----CceEEEEEcCCCChHHH-HHHHHHHHHhhcccCCEEEEEEcC-CCcCHHHHHHHHHHHhCCCCCC
Q 038494 168 FQDVVEALRND----KLNIIGVHGMGGVGKTT-LVKQIAKQVMEDKVFDKVVMAEVT-ENPDVQKIQDKLASDLDLNFDL 241 (1209)
Q Consensus 168 ~~~l~~~L~~~----~~~vi~I~G~~GiGKTt-La~~~~~~~~~~~~f~~~~wv~~s-~~~~~~~l~~~i~~~l~~~~~~ 241 (1209)
...+..++.++ +.++|+++|+.|+|||| ||+..++-..... =..+..|+.. -.....+-++..++-++.+...
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v 265 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV 265 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccchhhHHHHHHHHHHHhCCceEE
Confidence 44445555443 46899999999999965 5555554442222 2356666653 2345666667778888887665
Q ss_pred CCChHHHHHHHHHHHhcCCeEEEEEeCCC
Q 038494 242 NDSKPHRAKQLCQRLTKEKRVLIILDNIW 270 (1209)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~k~~LlvlDdv~ 270 (1209)
..+ ..........+. +. -+|.+|-+.
T Consensus 266 v~~-~~el~~ai~~l~-~~-d~ILVDTaG 291 (407)
T COG1419 266 VYS-PKELAEAIEALR-DC-DVILVDTAG 291 (407)
T ss_pred ecC-HHHHHHHHHHhh-cC-CEEEEeCCC
Confidence 555 344444455554 23 456666654
No 300
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.01 E-value=0.16 Score=54.50 Aligned_cols=90 Identities=21% Similarity=0.268 Sum_probs=57.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHH-hCCCCCCCCChHHHHHHHHHHHhc
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASD-LDLNFDLNDSKPHRAKQLCQRLTK 258 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~-l~~~~~~~~~~~~~~~~l~~~l~~ 258 (1209)
.+++=|+|+.|.||||+|.+++-..... -+.++|++.-+.++++++.. ++.. +..-........+....+...+..
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 4688899999999999999988666533 34889999999999887644 4444 221111111113333333333331
Q ss_pred ---CCeEEEEEeCCCcc
Q 038494 259 ---EKRVLIILDNIWKK 272 (1209)
Q Consensus 259 ---~k~~LlvlDdv~~~ 272 (1209)
.+--|+|+|.+-..
T Consensus 137 ~~~~~i~LvVVDSvaa~ 153 (279)
T COG0468 137 SGAEKIDLLVVDSVAAL 153 (279)
T ss_pred hccCCCCEEEEecCccc
Confidence 23578999988543
No 301
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.99 E-value=0.014 Score=60.16 Aligned_cols=83 Identities=24% Similarity=0.243 Sum_probs=52.6
Q ss_pred cCCCCCcEEEecCc--ccc-cccccccCCCCCcEEeccCcccCCc---ccccCCCCCCEEEccCCCCCccch----hccC
Q 038494 564 EGTEDLKVLSLSGI--HFS-SLSSSLGHLINLQTLCLDWCQLEDV---AAIGQLKKLEILSFRYSDIKQLPL----EIGQ 633 (1209)
Q Consensus 564 ~~l~~Lr~L~L~~~--~i~-~lp~~i~~l~~L~~L~l~~~~l~~l---~~i~~L~~L~~L~l~~~~~~~lp~----~i~~ 633 (1209)
..+++|+.|.++.| ++. .++.....+++|++|++++|+++.+ ..+..+.+|..|++.+|..+.+-. .+.-
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 45667777777777 332 4444455567777777777776554 455667777777877776654421 2445
Q ss_pred CCCCCEEeccCCC
Q 038494 634 LAQLQLLDLSNCS 646 (1209)
Q Consensus 634 L~~L~~L~l~~~~ 646 (1209)
+++|.+|+-..+.
T Consensus 142 l~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 142 LPSLKYLDGCDVD 154 (260)
T ss_pred hhhhccccccccC
Confidence 6778888766543
No 302
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.99 E-value=0.075 Score=50.59 Aligned_cols=45 Identities=22% Similarity=0.463 Sum_probs=35.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCC
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNF 239 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~ 239 (1209)
+|.|-|++|.||||+|+.+++...-+ | + +.-.+++++++..|.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----V------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----e------eccHHHHHHHHHcCCCH
Confidence 68999999999999999999887643 1 1 23457888888887653
No 303
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.97 E-value=0.19 Score=54.55 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=50.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCH--HHHHHHHHHHhCCCCC---CCCChHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDV--QKIQDKLASDLDLNFD---LNDSKPHRAKQLC 253 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~--~~l~~~i~~~l~~~~~---~~~~~~~~~~~l~ 253 (1209)
+.++|.++|++|+||||.+..++.....+ -..+.+++... +.. .+-++..++..+.+.. ...+.........
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 45799999999999999999999877643 23566676543 322 2334445555554321 1112222222222
Q ss_pred HHHhcCCeEEEEEeCCCc
Q 038494 254 QRLTKEKRVLIILDNIWK 271 (1209)
Q Consensus 254 ~~l~~~k~~LlvlDdv~~ 271 (1209)
........-++++|-.-.
T Consensus 148 ~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHCCCCEEEEeCCCC
Confidence 222223345788887644
No 304
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.94 E-value=0.11 Score=58.97 Aligned_cols=84 Identities=19% Similarity=0.249 Sum_probs=46.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc--CHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP--DVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT 257 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~--~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 257 (1209)
..++.++|++|+||||++..++........+ .+..++. +.+ .....++..++.++.+... ......+...+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~-Dt~R~aA~eQLk~yAe~lgvp~~~----~~~~~~l~~~l~ 296 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTT-DNYRIAAIEQLKRYADTMGMPFYP----VKDIKKFKETLA 296 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecc-cchhhhHHHHHHHHHHhcCCCeee----hHHHHHHHHHHH
Confidence 4689999999999999999999765332222 3333333 222 2233344445555554322 122334444444
Q ss_pred cCCeEEEEEeCC
Q 038494 258 KEKRVLIILDNI 269 (1209)
Q Consensus 258 ~~k~~LlvlDdv 269 (1209)
+...-+||+|-.
T Consensus 297 ~~~~D~VLIDTa 308 (432)
T PRK12724 297 RDGSELILIDTA 308 (432)
T ss_pred hCCCCEEEEeCC
Confidence 323345888843
No 305
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.90 E-value=0.047 Score=50.95 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=40.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhc
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTK 258 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (1209)
.+-|.|.|.+|+||||+|.+++..... -|+++++-..-.+++...-+...-..- +.+..++.+-..+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~-------~~i~isd~vkEn~l~~gyDE~y~c~i~---DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGL-------EYIEISDLVKENNLYEGYDEEYKCHIL---DEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCC-------ceEehhhHHhhhcchhcccccccCccc---cHHHHHHHHHHHHhc
Confidence 356889999999999999999965543 377777644333333332222221111 114455555555554
No 306
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.89 E-value=0.15 Score=54.51 Aligned_cols=87 Identities=14% Similarity=0.229 Sum_probs=54.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCC-----------------
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDL----------------- 241 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~----------------- 241 (1209)
...++.|+|.+|+|||++|.+++.....+ =..++|++..+. ..++.+.+ ++++....+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 35789999999999999999997665432 357889988654 44555543 333322110
Q ss_pred ---CCChHHHHHHHHHHHhcCCeEEEEEeCCC
Q 038494 242 ---NDSKPHRAKQLCQRLTKEKRVLIILDNIW 270 (1209)
Q Consensus 242 ---~~~~~~~~~~l~~~l~~~k~~LlvlDdv~ 270 (1209)
..........+.+.+.+.+.-++|+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 01113344555555554456689999876
No 307
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.12 Score=57.03 Aligned_cols=87 Identities=26% Similarity=0.314 Sum_probs=61.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHhc
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLN-DSKPHRAKQLCQRLTK 258 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l~~ 258 (1209)
..+|.|=|-+|+|||||..+++.+...+. .+.+|+-.+ +..++ +--+++++.+.... -..+...+.+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 46899999999999999999999998653 667766544 33332 44466777544321 1113445667777777
Q ss_pred CCeEEEEEeCCCcc
Q 038494 259 EKRVLIILDNIWKK 272 (1209)
Q Consensus 259 ~k~~LlvlDdv~~~ 272 (1209)
.++-++|+|-+...
T Consensus 167 ~~p~lvVIDSIQT~ 180 (456)
T COG1066 167 EKPDLVVIDSIQTL 180 (456)
T ss_pred cCCCEEEEecccee
Confidence 78999999998654
No 308
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.83 E-value=0.15 Score=56.93 Aligned_cols=75 Identities=23% Similarity=0.271 Sum_probs=46.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCC
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEK 260 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 260 (1209)
..+.++|.+|+|||+||..+++....+. ..++++++.+ +...+...-. . .. .+. ....+.+. .
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~~~------l~~~l~~~~~-~--~~---~~~-~~~~~~l~--~ 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTADE------LIEILREIRF-N--ND---KEL-EEVYDLLI--N 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEHHH------HHHHHHHHHh-c--cc---hhH-HHHHHHhc--c
Confidence 6799999999999999999999886542 3566666533 3333332111 0 00 111 11244453 3
Q ss_pred eEEEEEeCCCcc
Q 038494 261 RVLIILDNIWKK 272 (1209)
Q Consensus 261 ~~LlvlDdv~~~ 272 (1209)
-=|||+||+..+
T Consensus 247 ~DLLIIDDlG~e 258 (329)
T PRK06835 247 CDLLIIDDLGTE 258 (329)
T ss_pred CCEEEEeccCCC
Confidence 358999999655
No 309
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.83 E-value=0.23 Score=56.53 Aligned_cols=90 Identities=17% Similarity=0.141 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcc--cCCEEEEEEcCCC-cCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDK--VFDKVVMAEVTEN-PDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRL 256 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~--~f~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 256 (1209)
.++|.++|..|+||||.+..++....... +-..+..+++..- ....+-++..++.++.+...... ..........+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~-~~~l~~~L~~~ 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIES-FKDLKEEITQS 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCc-HHHHHHHHHHh
Confidence 46999999999999999999987765321 1234555555432 22333466666767765433333 22233333334
Q ss_pred hcCCeEEEEEeCCCcc
Q 038494 257 TKEKRVLIILDNIWKK 272 (1209)
Q Consensus 257 ~~~k~~LlvlDdv~~~ 272 (1209)
. +.-+|++|.+...
T Consensus 253 ~--~~DlVLIDTaGr~ 266 (388)
T PRK12723 253 K--DFDLVLVDTIGKS 266 (388)
T ss_pred C--CCCEEEEcCCCCC
Confidence 2 4568888987543
No 310
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.81 E-value=0.2 Score=55.83 Aligned_cols=90 Identities=22% Similarity=0.279 Sum_probs=56.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-CHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-DVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT 257 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 257 (1209)
..++++++|+.|+||||++..++.....+. ..+.+++...-. ...+-++..++.++.+.....+ ...+....+.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~d-p~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATS-PAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCC-HHHHHHHHHHHH
Confidence 357999999999999999999998765432 356677764322 3345566667777665433333 333444445554
Q ss_pred c-CCeEEEEEeCCCc
Q 038494 258 K-EKRVLIILDNIWK 271 (1209)
Q Consensus 258 ~-~k~~LlvlDdv~~ 271 (1209)
. +..-+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 2346788887754
No 311
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.18 Score=51.68 Aligned_cols=94 Identities=17% Similarity=0.212 Sum_probs=59.4
Q ss_pred ccchhhHHHHHHHHHHHHhC-------------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCH
Q 038494 158 FEAFDSRMKLFQDVVEALRN-------------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDV 224 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~ 224 (1209)
..++-|-++.++++.+..+- +..+-|.++|++|.|||-.|++|+++-... | +.|-..
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac--f-----irvigs--- 245 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC--F-----IRVIGS--- 245 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce--E-----EeehhH---
Confidence 34555788888888877651 234568899999999999999999876532 3 222111
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 225 QKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 225 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
+-+++- +|. ....++++.+--+..|-++|.||.++..
T Consensus 246 elvqky----vge-------garmvrelf~martkkaciiffdeidai 282 (435)
T KOG0729|consen 246 ELVQKY----VGE-------GARMVRELFEMARTKKACIIFFDEIDAI 282 (435)
T ss_pred HHHHHH----hhh-------hHHHHHHHHHHhcccceEEEEeeccccc
Confidence 111111 110 1345555665555567799999998754
No 312
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.76 E-value=0.16 Score=52.51 Aligned_cols=90 Identities=20% Similarity=0.236 Sum_probs=49.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccC--------CEEEEEEcCCCcCHHHHHHHHHHHhCCC--------------
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVF--------DKVVMAEVTENPDVQKIQDKLASDLDLN-------------- 238 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f--------~~~~wv~~s~~~~~~~l~~~i~~~l~~~-------------- 238 (1209)
.++.|.|.+|+||||++.+++........| ..++|++..... .++.+.+.......
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~--~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE--SQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H--HHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH--HHHHHHHHHHhcccCCccceEEeecccc
Confidence 588999999999999999999887653322 378888876653 23333332222111
Q ss_pred --------CCCCCChHHHHHHHHHHHhc-CCeEEEEEeCCCcc
Q 038494 239 --------FDLNDSKPHRAKQLCQRLTK-EKRVLIILDNIWKK 272 (1209)
Q Consensus 239 --------~~~~~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~ 272 (1209)
...........+.+.+.+.+ ...-+||+|++...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~ 153 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSL 153 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHH
Confidence 00001113445666776665 45679999987654
No 313
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.71 E-value=0.11 Score=58.98 Aligned_cols=88 Identities=23% Similarity=0.260 Sum_probs=55.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCC-ChHHHHHHHHHHHhc
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLND-SKPHRAKQLCQRLTK 258 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~~ 258 (1209)
..++.|.|.+|+|||||+.+++...... -..++|++..+. ..++ +.-+++++...+... ........+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4689999999999999999999877643 356788876543 3333 223455554322110 001123445555554
Q ss_pred CCeEEEEEeCCCcc
Q 038494 259 EKRVLIILDNIWKK 272 (1209)
Q Consensus 259 ~k~~LlvlDdv~~~ 272 (1209)
.+.-+||+|.+...
T Consensus 157 ~~~~lVVIDSIq~l 170 (372)
T cd01121 157 LKPDLVIIDSIQTV 170 (372)
T ss_pred cCCcEEEEcchHHh
Confidence 56778999998643
No 314
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.69 E-value=0.041 Score=64.10 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=42.1
Q ss_pred ccchhhHHHHHHHHHHHHh------CCCceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 158 FEAFDSRMKLFQDVVEALR------NDKLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
..+++|-++.+++|++.|. ..+.+++.++|++|+||||||+.+++-.+.
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3468899999999999883 455689999999999999999999987764
No 315
>PRK06547 hypothetical protein; Provisional
Probab=94.68 E-value=0.049 Score=54.57 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=28.2
Q ss_pred HHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 171 VVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 171 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
+...+......+|+|.|.+|.||||+|+.+++...
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33445556678999999999999999999998753
No 316
>PRK10867 signal recognition particle protein; Provisional
Probab=94.57 E-value=0.19 Score=57.96 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhc
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMED 207 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~ 207 (1209)
...+|.++|.+|+||||.|..++.....+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 35789999999999999999998876543
No 317
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.57 E-value=2.8 Score=47.30 Aligned_cols=58 Identities=26% Similarity=0.371 Sum_probs=39.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcC-CCcCHHHHHHHHHHHhCCCC
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVT-ENPDVQKIQDKLASDLDLNF 239 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s-~~~~~~~l~~~i~~~l~~~~ 239 (1209)
..+|-.+|.-|.||||-|..+++..+.+. + .+.-|++. ..+..-+-+++++++.+.+.
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~-~-kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKG-K-KVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcC-C-ceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 56899999999999999999999887632 2 22223221 23344555677777776654
No 318
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.55 E-value=0.029 Score=53.45 Aligned_cols=22 Identities=45% Similarity=0.892 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 038494 183 IGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 183 i~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
|.|.|.+|+||||+|+++.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 319
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.54 E-value=0.24 Score=57.51 Aligned_cols=88 Identities=17% Similarity=0.192 Sum_probs=51.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-CHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhc
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-DVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTK 258 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (1209)
.++++++|++|+||||++..++........-..+..++..... ...+-++...+.++.+...... ..........+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~-~~~l~~~l~~~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYD-PKELAKALEQLR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCC-HHhHHHHHHHhC-
Confidence 3589999999999999999988776511112456667664321 1223344445556655433333 222333333343
Q ss_pred CCeEEEEEeCCC
Q 038494 259 EKRVLIILDNIW 270 (1209)
Q Consensus 259 ~k~~LlvlDdv~ 270 (1209)
..-+|++|..-
T Consensus 299 -~~DlVlIDt~G 309 (424)
T PRK05703 299 -DCDVILIDTAG 309 (424)
T ss_pred -CCCEEEEeCCC
Confidence 34678889763
No 320
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.53 E-value=0.051 Score=58.57 Aligned_cols=114 Identities=15% Similarity=0.108 Sum_probs=62.9
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEE---cCCCcCHHHHHHHHHHHhCC-CCCC------CCChH
Q 038494 177 NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAE---VTENPDVQKIQDKLASDLDL-NFDL------NDSKP 246 (1209)
Q Consensus 177 ~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~---~s~~~~~~~l~~~i~~~l~~-~~~~------~~~~~ 246 (1209)
+.+...++|+|..|.||||+.+.++...... .+.+|+. +....... +++..... +... ..+..
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~----ei~~~~~~~~q~~~~~r~~v~~~~ 180 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERS----EIAGCVNGVPQHDVGIRTDVLDGC 180 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHH----HHHHHhcccccccccccccccccc
Confidence 3445688999999999999999998776532 2333332 11111112 22222211 1110 00001
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCccccccccCCcEEEEeccchhh
Q 038494 247 HRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHL 308 (1209)
Q Consensus 247 ~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 308 (1209)
.....+...+....+-++++|.+...+.+..+...+. .|..+|+||....+
T Consensus 181 ~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~-----------~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 181 PKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH-----------AGVSIIATAHGRDV 231 (270)
T ss_pred hHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh-----------CCCEEEEEechhHH
Confidence 1223344444434678999999877655554433332 56779999987654
No 321
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.53 E-value=0.11 Score=56.87 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=53.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCC-----CCChHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDL-----NDSKPHRAKQLCQ 254 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 254 (1209)
.+++-|+|..|+||||||.++....... -..++|++..+.++.. .++.+|.+.+. ....++....+..
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 4699999999999999999999876543 4578999998887665 34555554322 1222333333333
Q ss_pred HHhcCCeEEEEEeCCCcc
Q 038494 255 RLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 255 ~l~~~k~~LlvlDdv~~~ 272 (1209)
-++.+.--++|+|-|-..
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 344566678999998755
No 322
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.52 E-value=0.075 Score=51.48 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=45.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeE
Q 038494 183 IGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRV 262 (1209)
Q Consensus 183 i~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~ 262 (1209)
|.++|.+|+|||++|+.+++.... ...-+.++...+..++....--.-+...-.... +...+ .+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~-------l~~a~--~~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGP-------LVRAM--RKGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-C-------CCTTH--HEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEeccccccccceeeeeeccccccccccc-------ccccc--ccee
Confidence 679999999999999999998832 244567777777776654332110000000000 11111 1679
Q ss_pred EEEEeCCCcc
Q 038494 263 LIILDNIWKK 272 (1209)
Q Consensus 263 LlvlDdv~~~ 272 (1209)
++|+|++...
T Consensus 68 il~lDEin~a 77 (139)
T PF07728_consen 68 ILVLDEINRA 77 (139)
T ss_dssp EEEESSCGG-
T ss_pred EEEECCcccC
Confidence 9999999854
No 323
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.49 E-value=0.053 Score=55.42 Aligned_cols=52 Identities=23% Similarity=0.383 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEE
Q 038494 164 RMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAE 217 (1209)
Q Consensus 164 R~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 217 (1209)
+..+-...+++|. ...++.+.|++|.|||.||.+.+-+.-....|+.++++.
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3444556666665 456999999999999999999997765557888888874
No 324
>PRK04328 hypothetical protein; Provisional
Probab=94.48 E-value=0.17 Score=54.44 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=32.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCC
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTEN 221 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~ 221 (1209)
...++.|.|.+|+|||+||.+++.....+ -..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC
Confidence 35789999999999999999988775433 356788887663
No 325
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.45 E-value=1.1 Score=49.95 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=33.8
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCCC--CCcchHHHHHHHHHhCCChhHH
Q 038494 318 IFLIEVLSKEEALQFFEKIVGNSAK--ASAFQPLADEIVGKCGGLPVAL 364 (1209)
Q Consensus 318 ~~~l~~L~~~e~~~lf~~~~~~~~~--~~~~~~~~~~i~~~~~glPLai 364 (1209)
.+++++++.+|+..++.-......- ....+...+++.--.+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999887652221 1334556667777779999644
No 326
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.44 E-value=0.074 Score=51.66 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=28.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEE
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAE 217 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 217 (1209)
..+|.|+|.+|.||||||+++.+..... -..+++++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEec
Confidence 3589999999999999999999999865 23455664
No 327
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.41 E-value=0.23 Score=57.32 Aligned_cols=90 Identities=18% Similarity=0.174 Sum_probs=48.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCC-cCHHHHHHHHHHHhCCCCCC---CCChHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTEN-PDVQKIQDKLASDLDLNFDL---NDSKPHRAKQLCQR 255 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~l~~~ 255 (1209)
..++.++|.+|+||||.|..++.....+..+ .+.-|++... ....+-++..++..+.+... .....+......+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999886432212 3444444321 12233344455555544221 12223333344444
Q ss_pred HhcCCeEEEEEeCCC
Q 038494 256 LTKEKRVLIILDNIW 270 (1209)
Q Consensus 256 l~~~k~~LlvlDdv~ 270 (1209)
......-+||+|-.-
T Consensus 178 ~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 178 AKENGFDVVIVDTAG 192 (428)
T ss_pred HHhcCCCEEEEeCCC
Confidence 432222377777664
No 328
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.41 E-value=0.085 Score=63.93 Aligned_cols=79 Identities=10% Similarity=0.129 Sum_probs=60.4
Q ss_pred cccccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHH
Q 038494 155 AKDFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASD 234 (1209)
Q Consensus 155 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~ 234 (1209)
+.....++|.++.++.|..++... +.+.++|.+|+||||+|+.+++.... .+++.++|+.- ...+...+++.++.+
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~~~ 102 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVPAG 102 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHHHh
Confidence 344677899999888888877655 47889999999999999999987643 34677888766 344677777878776
Q ss_pred hCC
Q 038494 235 LDL 237 (1209)
Q Consensus 235 l~~ 237 (1209)
+|.
T Consensus 103 ~G~ 105 (637)
T PRK13765 103 KGK 105 (637)
T ss_pred cCH
Confidence 654
No 329
>PRK07667 uridine kinase; Provisional
Probab=94.38 E-value=0.066 Score=55.11 Aligned_cols=38 Identities=21% Similarity=0.565 Sum_probs=29.8
Q ss_pred HHHHHHHh--CCCceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 169 QDVVEALR--NDKLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 169 ~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
+.+.+.+. .++..+|+|.|.+|.||||+|+.+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44555554 344579999999999999999999988764
No 330
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.38 E-value=0.021 Score=34.81 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=16.2
Q ss_pred CCcEEEecCcccccccccccCC
Q 038494 568 DLKVLSLSGIHFSSLSSSLGHL 589 (1209)
Q Consensus 568 ~Lr~L~L~~~~i~~lp~~i~~l 589 (1209)
+|++||+++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4788888888888888776543
No 331
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.37 E-value=0.073 Score=53.53 Aligned_cols=25 Identities=40% Similarity=0.477 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
.|.|.|.+|.||||+|+.+++....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999544
No 332
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.37 E-value=0.024 Score=58.59 Aligned_cols=102 Identities=24% Similarity=0.283 Sum_probs=59.5
Q ss_pred CCCCCcEEEecCcccccccccccCCCCCcEEeccCcc--c-CCc-ccccCCCCCCEEEccCCCCCccc--hhccCCCCCC
Q 038494 565 GTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQ--L-EDV-AAIGQLKKLEILSFRYSDIKQLP--LEIGQLAQLQ 638 (1209)
Q Consensus 565 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~--l-~~l-~~i~~L~~L~~L~l~~~~~~~lp--~~i~~L~~L~ 638 (1209)
.+..|..|++.+..++.+- .+..|++|++|.++.|. + ..+ -..-++++|++|++++|+++.+. ....++.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 4455555556655555432 24467788888888883 2 233 33445588888888888765321 2245667777
Q ss_pred EEeccCCCCCc--ccCchhhcCCCCCcEEEC
Q 038494 639 LLDLSNCSSLV--VIAPNVISKFSRLEELYM 667 (1209)
Q Consensus 639 ~L~l~~~~~l~--~~~~~~l~~L~~L~~L~l 667 (1209)
.|++++|.... ..-...+.-+++|..|+-
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 78887764332 222223445677777654
No 333
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=0.12 Score=56.36 Aligned_cols=50 Identities=20% Similarity=0.192 Sum_probs=35.8
Q ss_pred ccchhhHHHHHHHHHHHHh---------C---CCceEEEEEcCCCChHHHHHHHHHHHHhhc
Q 038494 158 FEAFDSRMKLFQDVVEALR---------N---DKLNIIGVHGMGGVGKTTLVKQIAKQVMED 207 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~---------~---~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~ 207 (1209)
+.++.|-.+.++-|.++.. . ..=+-|..+|++|.|||-||++||.+-...
T Consensus 211 W~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tT 272 (491)
T KOG0738|consen 211 WDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTT 272 (491)
T ss_pred hHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCe
Confidence 4456666666666665543 1 123568899999999999999999987743
No 334
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.42 Score=56.70 Aligned_cols=179 Identities=18% Similarity=0.200 Sum_probs=94.6
Q ss_pred ccchhhHHHHH---HHHHHHHhCCC---------ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHH
Q 038494 158 FEAFDSRMKLF---QDVVEALRNDK---------LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQ 225 (1209)
Q Consensus 158 ~~~~~gR~~~~---~~l~~~L~~~~---------~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~ 225 (1209)
..++.|.++.+ .++++.|.++. .+-|.++|++|.|||.||++++-+..+- | ...|...
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~--- 218 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSD--- 218 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchh---
Confidence 44556766554 45555665432 3567899999999999999999887763 2 2222211
Q ss_pred HHHHHHHHHh-CCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCcccc------c----ccc
Q 038494 226 KIQDKLASDL-DLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDR------K----QDL 294 (1209)
Q Consensus 226 ~l~~~i~~~l-~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~------~----~~~ 294 (1209)
..+.+ +.. ...++.+...-++..+++|++|.++....-+-.. ...+++.+. + .+.
T Consensus 219 -----FVemfVGvG-------AsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g--~GggnderEQTLNQlLvEmDGF~ 284 (596)
T COG0465 219 -----FVEMFVGVG-------ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG--LGGGNDEREQTLNQLLVEMDGFG 284 (596)
T ss_pred -----hhhhhcCCC-------cHHHHHHHHHhhccCCCeEEEehhhhcccccCCC--CCCCchHHHHHHHHHHhhhccCC
Confidence 01111 111 4456666666655678999999988663322221 112221110 0 011
Q ss_pred --CCcEEEEeccchhhhccc----CCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChh
Q 038494 295 --RRRTIILTSRSKHLLTND----MNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPV 362 (1209)
Q Consensus 295 --~~s~ilvTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL 362 (1209)
.|-.|+-.|-..+|...+ ..-...+.++.-+...-.++++-++....-.++ .+.. .|++.+-|.-.
T Consensus 285 ~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~-Vdl~-~iAr~tpGfsG 356 (596)
T COG0465 285 GNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAED-VDLK-KIARGTPGFSG 356 (596)
T ss_pred CCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCc-CCHH-HHhhhCCCccc
Confidence 233333344444454222 233456667666667777777766653322221 1122 37777766543
No 335
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.29 E-value=0.62 Score=50.49 Aligned_cols=129 Identities=12% Similarity=0.128 Sum_probs=73.0
Q ss_pred HHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhc------------ccCCEEEEEEcCCCcCHHHHHHHHHHH
Q 038494 168 FQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMED------------KVFDKVVMAEVTENPDVQKIQDKLASD 234 (1209)
Q Consensus 168 ~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~------------~~f~~~~wv~~s~~~~~~~l~~~i~~~ 234 (1209)
-+.+...+..++. ....++|+.|+||+++|..++...-.. .|.|..+..+....
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~------------- 72 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG------------- 72 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC-------------
Confidence 4566777766554 567799999999999999999877432 13332211111110
Q ss_pred hCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCccccCCCCCCCCccccccccCCcEEEEeccc-hh
Q 038494 235 LDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKK--LGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRS-KH 307 (1209)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~-~~ 307 (1209)
..-..+.++.+.+.+. .+++-++|+|+++.. +.+..+...+-... .++.+|++|.+ ..
T Consensus 73 -------~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp--------~~~~fiL~~~~~~~ 137 (290)
T PRK05917 73 -------RLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPP--------QHGVIILTSAKPQR 137 (290)
T ss_pred -------CcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCC--------CCeEEEEEeCChhh
Confidence 0011445555555554 245678899999876 34555433332222 45555555555 44
Q ss_pred hhcccCCcceEEEcCCC
Q 038494 308 LLTNDMNSQKIFLIEVL 324 (1209)
Q Consensus 308 v~~~~~~~~~~~~l~~L 324 (1209)
+..+.......+.+.++
T Consensus 138 ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 138 LPPTIRSRSLSIHIPME 154 (290)
T ss_pred CcHHHHhcceEEEccch
Confidence 44333445567777665
No 336
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.29 E-value=0.26 Score=53.68 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=29.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP 222 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~ 222 (1209)
....+|+|.|..|+||||+|+.+..-......-..+..++...-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 345799999999999999998887655421001235555555433
No 337
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.26 E-value=0.18 Score=54.51 Aligned_cols=39 Identities=23% Similarity=0.395 Sum_probs=30.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE 220 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~ 220 (1209)
..++.|.|.+|+|||++|.+++.....+ =..+++++...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 4689999999999999999998765432 24677888764
No 338
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.22 E-value=0.14 Score=52.61 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=32.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHH
Q 038494 183 IGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDK 230 (1209)
Q Consensus 183 i~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~ 230 (1209)
+.|.|.+|+|||++|.+++.....+ =..++|++..+ +..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH
Confidence 6799999999999999998876532 24577887654 34444443
No 339
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.21 E-value=0.042 Score=45.49 Aligned_cols=23 Identities=43% Similarity=0.749 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 340
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.15 E-value=0.16 Score=48.41 Aligned_cols=62 Identities=15% Similarity=0.300 Sum_probs=23.1
Q ss_pred ccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEeccCcccCCc--ccccCCCCCCEEEcc
Q 038494 557 EISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFR 620 (1209)
Q Consensus 557 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l~ 620 (1209)
.+....|.+++.|+.+.+..+ +..++. .+..+.+|+.+.+.+ .+..+ ..+..+.+|+.+++.
T Consensus 25 ~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 25 KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 344444455555555555442 333332 344444445554433 22222 233334444444443
No 341
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.12 E-value=0.25 Score=51.91 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=28.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP 222 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~ 222 (1209)
+|+|.|.+|.||||+|+.+.........=..+..++...-+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 48999999999999999999887531111235556555443
No 342
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.04 E-value=0.22 Score=51.70 Aligned_cols=97 Identities=27% Similarity=0.390 Sum_probs=58.2
Q ss_pred HHHHhC-CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCC-cCHHHHHHHHHHHhCCCC------CCCC
Q 038494 172 VEALRN-DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTEN-PDVQKIQDKLASDLDLNF------DLND 243 (1209)
Q Consensus 172 ~~~L~~-~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~------~~~~ 243 (1209)
++.+.. .+...+.|.|.+|+|||+|+..+++.... +.++++.+.+. ..+.++.+++...-.... ...+
T Consensus 6 ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~~----d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~ 81 (215)
T PF00006_consen 6 IDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQDA----DVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDE 81 (215)
T ss_dssp HHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCTT----TEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS
T ss_pred eccccccccCCEEEEEcCcccccchhhHHHHhcccc----cceeeeeccccchhHHHHHHHHhhcccccccccccccchh
Confidence 444441 23357899999999999999999998853 34577777765 356666666643311110 1111
Q ss_pred ChHH------HHHHHHHHHh-cCCeEEEEEeCCCcc
Q 038494 244 SKPH------RAKQLCQRLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 244 ~~~~------~~~~l~~~l~-~~k~~LlvlDdv~~~ 272 (1209)
.... ..-.+-+++. ++++.|+++||+...
T Consensus 82 ~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 82 PPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTRW 117 (215)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHHH
T ss_pred hHHHHhhhhccchhhhHHHhhcCCceeehhhhhHHH
Confidence 1111 1122334443 489999999998543
No 343
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.01 E-value=0.41 Score=51.16 Aligned_cols=94 Identities=22% Similarity=0.209 Sum_probs=59.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhh--cccCCEEEEEEcCCCc-CHHHHHHHHHHHhCCCC-------CCCCCh---
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVME--DKVFDKVVMAEVTENP-DVQKIQDKLASDLDLNF-------DLNDSK--- 245 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~--~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~-------~~~~~~--- 245 (1209)
+...+.|.|-+|+|||+|+..+++.... +.+-+.++++-+.+.. ...++++.+.+.-.... .+++..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3467899999999999999999877641 2224678888887764 46666666654321110 111110
Q ss_pred --HHHHHHHHHHHhc--CCeEEEEEeCCCcc
Q 038494 246 --PHRAKQLCQRLTK--EKRVLIILDNIWKK 272 (1209)
Q Consensus 246 --~~~~~~l~~~l~~--~k~~LlvlDdv~~~ 272 (1209)
....-.+-+++.. ++++|+++||+..-
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 1122345566652 68999999998764
No 344
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.98 E-value=0.37 Score=55.25 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=50.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC-CcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhc
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE-NPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTK 258 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (1209)
..+|+++|..|+||||++..++...........+.++.... .....+-+...++.++.+........+ .......+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~d-l~~al~~l~- 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIAD-LQLMLHELR- 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHH-HHHHHHHhc-
Confidence 46999999999999999998887643222233444444332 223444455666777766543333222 233334443
Q ss_pred CCeEEEEEeCC
Q 038494 259 EKRVLIILDNI 269 (1209)
Q Consensus 259 ~k~~LlvlDdv 269 (1209)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 23 45666764
No 345
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.95 E-value=0.2 Score=52.69 Aligned_cols=146 Identities=15% Similarity=0.158 Sum_probs=78.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEc--CC--CcCHHHHHHHHHHHhCCCCCC-------CCChHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEV--TE--NPDVQKIQDKLASDLDLNFDL-------NDSKPH 247 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~--s~--~~~~~~l~~~i~~~l~~~~~~-------~~~~~~ 247 (1209)
+..+++|+|.+|+||||+++.+..-.... .+.++|-.- .. .....+-..++++.++..... -.....
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt--~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT--SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC--CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 34689999999999999999998776643 333333211 11 222344455666666644311 111122
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCcccCc---cccCCCCCCCCccccccccCCcEEEEeccchhhhcccCCcceEEEcCCC
Q 038494 248 RAKQLCQRLTKEKRVLIILDNIWKKLGL---EEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLLTNDMNSQKIFLIEVL 324 (1209)
Q Consensus 248 ~~~~l~~~l~~~k~~LlvlDdv~~~~~~---~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~~~~~~l~~L 324 (1209)
+.-.+.+.+. -++-++|.|.--+.-+. ..+...+.+ ++...|-..+..|.+-.++.+......+..+...
T Consensus 116 QRi~IARALa-l~P~liV~DEpvSaLDvSiqaqIlnLL~d------lq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~i 188 (268)
T COG4608 116 QRIGIARALA-LNPKLIVADEPVSALDVSVQAQILNLLKD------LQEELGLTYLFISHDLSVVRYISDRIAVMYLGKI 188 (268)
T ss_pred hhHHHHHHHh-hCCcEEEecCchhhcchhHHHHHHHHHHH------HHHHhCCeEEEEEEEHHhhhhhcccEEEEecCce
Confidence 2223445554 58899999997665321 111111110 0111477788889888777543333333333332
Q ss_pred -CHHHHHHHH
Q 038494 325 -SKEEALQFF 333 (1209)
Q Consensus 325 -~~~e~~~lf 333 (1209)
....+.++|
T Consensus 189 VE~g~~~~~~ 198 (268)
T COG4608 189 VEIGPTEEVF 198 (268)
T ss_pred eEecCHHHHh
Confidence 333344444
No 346
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=93.94 E-value=0.63 Score=44.85 Aligned_cols=113 Identities=16% Similarity=0.275 Sum_probs=69.7
Q ss_pred ChhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHhchhHHHHhhccccchHHHHHHHH
Q 038494 1 MAADL-VSTTFSGIVTEGAKALFEPIMRQISYVFKYQSYIAELKVQVKELEYKRERVGIPVREATQQRDEIYKDVADWLN 79 (1209)
Q Consensus 1 ma~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~~~~~wl~ 79 (1209)
|++.+ +++|++.+++.+...+....-+ ... -+.-++.|.++++.+..++++.+.-....+..-+.-++
T Consensus 1 ~~~eL~~gaalG~~~~eLlk~v~~~~~k----~~~-------fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e 69 (147)
T PF05659_consen 1 PIAELVGGAALGAVFGELLKAVIDASKK----SLS-------FKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIE 69 (147)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHh-------hhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHH
Confidence 34444 4445555666666555443322 222 25556677777778888887777554444555577788
Q ss_pred HHHHHHHhhhchhhhhhhhhhcccccccccCCcchhhhhHHHHHHHHHHHHhhh
Q 038494 80 NVDEFISEGVAKSIIDDEDRAKKSCFKGFCPNLISRYKLSKQAAKAAEAAASLV 133 (1209)
Q Consensus 80 ~~~~~~~d~~~ed~ld~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 133 (1209)
++.+...++ +++++.+...++ .++...++.+++|+++.+.+....
T Consensus 70 ~L~~~L~~g--~~LV~k~sk~~r-------~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 70 RLKELLEKG--KELVEKCSKVRR-------WNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHHHHHH--HHHHHHhccccH-------HHHHhhHhHHHHHHHHHHHHHHHh
Confidence 899999999 888876543321 124445566778888777766654
No 347
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.93 E-value=0.058 Score=55.75 Aligned_cols=109 Identities=10% Similarity=0.106 Sum_probs=55.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC-CcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcC
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE-NPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKE 259 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 259 (1209)
..|.|.|+.|.||||++..+....... ....++.--.. ++.... ...+..+-.... ......+.+...+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t~e~~~E~~~~~-~~~~i~q~~vg~----~~~~~~~~i~~aLr~- 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILTIEDPIEFVHES-KRSLINQREVGL----DTLSFENALKAALRQ- 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEEEcCCccccccC-ccceeeecccCC----CccCHHHHHHHHhcC-
Confidence 478999999999999999887766432 23333322111 110000 001111100000 112233445555553
Q ss_pred CeEEEEEeCCCcccCccccCCCCCCCCccccccccCCcEEEEeccchhh
Q 038494 260 KRVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHL 308 (1209)
Q Consensus 260 k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 308 (1209)
.+=.|++|++.+.+.+........ .|..++.|+....+
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~a~-----------~G~~v~~t~Ha~~~ 111 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTAAE-----------TGHLVMSTLHTNSA 111 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHHHH-----------cCCEEEEEecCCcH
Confidence 567999999987655443322211 45557777765543
No 348
>PRK05439 pantothenate kinase; Provisional
Probab=93.91 E-value=0.48 Score=52.01 Aligned_cols=45 Identities=22% Similarity=0.180 Sum_probs=30.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP 222 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~ 222 (1209)
....+|+|.|.+|+||||+|+.+.........-..+.-++...-+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 345689999999999999999998765431111234445554433
No 349
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.91 E-value=0.2 Score=50.73 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
...+|.|+|++|+||||+|+.++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999988764
No 350
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.88 E-value=0.32 Score=64.30 Aligned_cols=27 Identities=33% Similarity=0.279 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
.+-|.++|++|+|||-||+++|.+..+
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 456889999999999999999988754
No 351
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.86 E-value=0.053 Score=58.86 Aligned_cols=90 Identities=18% Similarity=0.323 Sum_probs=50.3
Q ss_pred HHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHH
Q 038494 169 QDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHR 248 (1209)
Q Consensus 169 ~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~ 248 (1209)
..+++.+...+ +-+.++|++|+|||++++.......... | .+.-++.+...+...+++.+-..+.......-. .
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~g-P-- 96 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQLQKIIESKLEKRRGRVYG-P-- 96 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHHHHHCCCTTECECTTEEEE-E--
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCC-C--
Confidence 45555555544 4568999999999999999876544321 1 234456666555554443222222111000000 0
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 249 AKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 249 ~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
..+|+.++.+||+.-.
T Consensus 97 --------~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 97 --------PGGKKLVLFIDDLNMP 112 (272)
T ss_dssp --------ESSSEEEEEEETTT-S
T ss_pred --------CCCcEEEEEecccCCC
Confidence 1368999999998654
No 352
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.83 E-value=0.32 Score=56.77 Aligned_cols=88 Identities=17% Similarity=0.173 Sum_probs=50.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC-CcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhc
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE-NPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTK 258 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (1209)
..+++++|+.|+||||.+..++.....+.....+..++... .....+-++...+..+.+........+... ....+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~-aL~~L~- 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRL-ALSELR- 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHH-HHHhcc-
Confidence 36999999999999999999998765432222455565433 223444455566666655432222122222 223333
Q ss_pred CCeEEEEEeCCC
Q 038494 259 EKRVLIILDNIW 270 (1209)
Q Consensus 259 ~k~~LlvlDdv~ 270 (1209)
++ ..+++|..-
T Consensus 334 d~-d~VLIDTaG 344 (484)
T PRK06995 334 NK-HIVLIDTIG 344 (484)
T ss_pred CC-CeEEeCCCC
Confidence 23 466777654
No 353
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.76 E-value=0.049 Score=49.80 Aligned_cols=24 Identities=42% Similarity=0.710 Sum_probs=21.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhh
Q 038494 183 IGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 183 i~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
|-|+|.+|+|||++|+.++.+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999988764
No 354
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.75 E-value=0.057 Score=52.64 Aligned_cols=24 Identities=42% Similarity=0.581 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999976653
No 355
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.72 E-value=0.39 Score=55.62 Aligned_cols=93 Identities=23% Similarity=0.335 Sum_probs=60.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-CHHHHHHHHHHHhCCC------CCCCCCh------
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-DVQKIQDKLASDLDLN------FDLNDSK------ 245 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~------~~~~~~~------ 245 (1209)
+...++|+|.+|+|||||+.++++..... +-+.++++-+.+.. .+.++++.+...-... ...+...
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 45689999999999999999999887753 56777888777654 4556666555432111 0111111
Q ss_pred HHHHHHHHHHHh-c-CCeEEEEEeCCCcc
Q 038494 246 PHRAKQLCQRLT-K-EKRVLIILDNIWKK 272 (1209)
Q Consensus 246 ~~~~~~l~~~l~-~-~k~~LlvlDdv~~~ 272 (1209)
....-.+-+++. + ++++|+++||+..-
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 122234556664 2 79999999999654
No 356
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.72 E-value=0.5 Score=58.01 Aligned_cols=88 Identities=16% Similarity=0.201 Sum_probs=55.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC-CcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhc
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE-NPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTK 258 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (1209)
..+|+++|+.|+||||.+..++...........+..++... .....+-++...+.++.+.....+ ...+....+.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~-~~~l~~al~~~~- 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKD-AADLRFALAALG- 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCC-HHHHHHHHHHhc-
Confidence 46999999999999999999987764322223555555432 222455667777777766544333 333444455554
Q ss_pred CCeEEEEEeCCC
Q 038494 259 EKRVLIILDNIW 270 (1209)
Q Consensus 259 ~k~~LlvlDdv~ 270 (1209)
++ -+|++|-.-
T Consensus 263 ~~-D~VLIDTAG 273 (767)
T PRK14723 263 DK-HLVLIDTVG 273 (767)
T ss_pred CC-CEEEEeCCC
Confidence 33 478888776
No 357
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.72 E-value=0.19 Score=49.13 Aligned_cols=25 Identities=24% Similarity=0.664 Sum_probs=22.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
+|.|+|.+|.||||+|+.+......
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999988753
No 358
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.70 E-value=0.027 Score=34.39 Aligned_cols=21 Identities=19% Similarity=0.426 Sum_probs=13.4
Q ss_pred CCCEEEccCCCCCccchhccC
Q 038494 613 KLEILSFRYSDIKQLPLEIGQ 633 (1209)
Q Consensus 613 ~L~~L~l~~~~~~~lp~~i~~ 633 (1209)
+|++||+++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466677777766666666544
No 359
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=93.69 E-value=0.059 Score=55.62 Aligned_cols=25 Identities=48% Similarity=0.751 Sum_probs=23.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
+|+|.|.+|.||||+|+.++.....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6999999999999999999998875
No 360
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.69 E-value=0.25 Score=53.25 Aligned_cols=96 Identities=11% Similarity=0.125 Sum_probs=54.1
Q ss_pred HHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCC------C
Q 038494 170 DVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLN------D 243 (1209)
Q Consensus 170 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~------~ 243 (1209)
+..+++...+..+|.|.|.+|.|||||+..+.+....+ .. ++.+ ..+..+..+ ...++..+.+.... .
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~--~~-~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Ch 167 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS--VP-CAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCH 167 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC--CC-EEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCc
Confidence 34455556788999999999999999999999887643 22 2222 122122222 11233333321111 1
Q ss_pred ChHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 038494 244 SKPHRAKQLCQRLTKEKRVLIILDNIWK 271 (1209)
Q Consensus 244 ~~~~~~~~l~~~l~~~k~~LlvlDdv~~ 271 (1209)
.....+......|.....-++|++++-+
T Consensus 168 l~a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 168 LDAQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred CcHHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 1133344445555433446778899875
No 361
>PF13245 AAA_19: Part of AAA domain
Probab=93.69 E-value=0.21 Score=42.15 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=18.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
+.+++.|.|.+|.|||+++.+.....
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34678889999999995554444443
No 362
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=0.48 Score=58.79 Aligned_cols=103 Identities=18% Similarity=0.230 Sum_probs=67.4
Q ss_pred chhhHHHHHHHHHHHHhC------C--CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHH
Q 038494 160 AFDSRMKLFQDVVEALRN------D--KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKL 231 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~~------~--~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i 231 (1209)
.++|.++.+..|.+++.. + ...++.+.|+.|+|||.||++++.-.-.. .+..+-+++++- .+ +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs--e~~~IriDmse~------~e-v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS--EENFIRLDMSEF------QE-V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC--ccceEEechhhh------hh-h
Confidence 466888888888888762 1 34678899999999999999999887532 344555555442 12 3
Q ss_pred HHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc
Q 038494 232 ASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL 273 (1209)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~ 273 (1209)
.+..+.+..-.. .+....+-+.++...-.+|+||||+..+
T Consensus 634 skligsp~gyvG--~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 634 SKLIGSPPGYVG--KEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred hhccCCCccccc--chhHHHHHHHHhcCCceEEEEechhhcC
Confidence 333333221111 2344567777775555788899999773
No 363
>PRK08233 hypothetical protein; Provisional
Probab=93.59 E-value=0.063 Score=54.90 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..+|+|.|.+|+||||+|+.++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 364
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.58 E-value=0.27 Score=54.69 Aligned_cols=37 Identities=16% Similarity=0.365 Sum_probs=26.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC
Q 038494 183 IGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE 220 (1209)
Q Consensus 183 i~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~ 220 (1209)
+++.|++|.||||+++.+.+.......+ .+.+++..+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~-~v~~~~~Dd 38 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGW-AVAVITYDD 38 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCC-eEEEEcccc
Confidence 6799999999999999999887632222 345555443
No 365
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.57 E-value=0.17 Score=52.80 Aligned_cols=60 Identities=18% Similarity=0.333 Sum_probs=38.5
Q ss_pred HHHHHHHHh--CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHH
Q 038494 168 FQDVVEALR--NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKI 227 (1209)
Q Consensus 168 ~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l 227 (1209)
..++++.+. ..+..+|+|.|++|+|||||.-.+....+.+.+=-.++=|+-|.+++--.+
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc
Confidence 345555554 346789999999999999999999998886544445666666666654333
No 366
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.54 E-value=0.13 Score=51.67 Aligned_cols=49 Identities=27% Similarity=0.360 Sum_probs=34.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLAS 233 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~ 233 (1209)
..+|+|-||=|+||||||+.+++....+ ++.-.+.+++-+...+.++-+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhHHH
Confidence 4689999999999999999999988743 233445555445555554443
No 367
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.50 E-value=0.15 Score=54.20 Aligned_cols=89 Identities=16% Similarity=0.232 Sum_probs=52.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCC--------------CC----
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNF--------------DL---- 241 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~--------------~~---- 241 (1209)
..++.|.|.+|+|||++|.+++.....+. =..++|++..++. .++.+.+. .++.+. ..
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~-ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF-GEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH-T--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc-CCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccccc
Confidence 46999999999999999999886664320 1357888876543 44444432 333210 00
Q ss_pred --CCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 242 --NDSKPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 242 --~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
..+.......+.+.+...+...+|+|.+...
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1233444555555554334578889986543
No 368
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.50 E-value=0.074 Score=55.73 Aligned_cols=27 Identities=41% Similarity=0.592 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999999876
No 369
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.45 E-value=0.14 Score=48.31 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
...+|.+.|.-|.||||+++.+++....
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3458999999999999999999988654
No 370
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.42 E-value=0.13 Score=60.87 Aligned_cols=57 Identities=26% Similarity=0.327 Sum_probs=43.6
Q ss_pred ccchhhHHHHHHHHHHHHhC-----CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEc
Q 038494 158 FEAFDSRMKLFQDVVEALRN-----DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEV 218 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 218 (1209)
..+++-..+.++++.+||.. ...+++.+.|++|+||||.++.++++.. |+.+=|.+.
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np 79 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINP 79 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCC
Confidence 44555556678888888873 2357899999999999999999998864 666778653
No 371
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.79 Score=50.15 Aligned_cols=28 Identities=39% Similarity=0.374 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhc
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMED 207 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~ 207 (1209)
.+-|.++|++|.|||-+|++++.+....
T Consensus 127 ~kGiLL~GPpG~GKTmlAKA~Akeaga~ 154 (386)
T KOG0737|consen 127 PKGILLYGPPGTGKTMLAKAIAKEAGAN 154 (386)
T ss_pred CccceecCCCCchHHHHHHHHHHHcCCC
Confidence 4568899999999999999999887643
No 372
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.40 E-value=0.058 Score=58.22 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
+.|.|.|.+|.||||+|+++......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 47899999999999999999988775
No 373
>PRK03839 putative kinase; Provisional
Probab=93.40 E-value=0.069 Score=54.44 Aligned_cols=24 Identities=46% Similarity=0.682 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.|.|.|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999875
No 374
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.40 E-value=0.15 Score=55.02 Aligned_cols=56 Identities=23% Similarity=0.210 Sum_probs=42.9
Q ss_pred ccccchhhHHHHHHH---HHHHHhCC--CceEEEEEcCCCChHHHHHHHHHHHHhhcccCC
Q 038494 156 KDFEAFDSRMKLFQD---VVEALRND--KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFD 211 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~---l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~ 211 (1209)
....+|||..+..+. +++++.++ ..+.|.|+|++|.|||+||..+++..-.+-+|-
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 345688887655443 66666654 357899999999999999999999998766663
No 375
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.38 E-value=0.11 Score=57.03 Aligned_cols=53 Identities=30% Similarity=0.387 Sum_probs=38.0
Q ss_pred ccchhhHHHHHHH---HHHHHhCCC--ceEEEEEcCCCChHHHHHHHHHHHHhhcccC
Q 038494 158 FEAFDSRMKLFQD---VVEALRNDK--LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVF 210 (1209)
Q Consensus 158 ~~~~~gR~~~~~~---l~~~L~~~~--~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f 210 (1209)
..++||..+..+. +++++...+ .+.|.+.|++|.|||+||..+++....+-+|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 5688987665444 666666554 5899999999999999999999998866444
No 376
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.36 E-value=0.19 Score=61.31 Aligned_cols=77 Identities=12% Similarity=0.142 Sum_probs=53.2
Q ss_pred cccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhC
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLD 236 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 236 (1209)
-...++|.++.+..+...+.... .+.++|++|+||||+|+.+++..... .|..++++.- ...+...+++.++..++
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~n-~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYPN-PEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEeC-CCCCchHHHHHHHHhhc
Confidence 35678899988888887776553 56699999999999999999877543 3333333322 22345556777776665
Q ss_pred C
Q 038494 237 L 237 (1209)
Q Consensus 237 ~ 237 (1209)
.
T Consensus 92 ~ 92 (608)
T TIGR00764 92 R 92 (608)
T ss_pred h
Confidence 3
No 377
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.34 E-value=0.081 Score=55.28 Aligned_cols=28 Identities=43% Similarity=0.544 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
+...+|+|+|++|+||||||+.++....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999997764
No 378
>PTZ00301 uridine kinase; Provisional
Probab=93.33 E-value=0.081 Score=54.83 Aligned_cols=26 Identities=35% Similarity=0.719 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..+|+|.|.+|.||||+|+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999988764
No 379
>PRK06762 hypothetical protein; Provisional
Probab=93.33 E-value=0.077 Score=53.28 Aligned_cols=24 Identities=38% Similarity=0.661 Sum_probs=22.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
.+|.|.|++|+||||+|+.+++..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 588999999999999999998776
No 380
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.31 E-value=0.12 Score=59.51 Aligned_cols=46 Identities=22% Similarity=0.167 Sum_probs=35.1
Q ss_pred chhhHHHHHHHHHHHHhC-------C---------CceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 160 AFDSRMKLFQDVVEALRN-------D---------KLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~~-------~---------~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.++|.+..++.+..++.+ . ....|.++|++|+|||++|+.++....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 478998888877655421 0 125689999999999999999987654
No 381
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=93.29 E-value=0.27 Score=46.31 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=23.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
.+|.|.|.+|.||||+++++.+...-
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~ 38 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGL 38 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCC
Confidence 48999999999999999999998874
No 382
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.27 E-value=0.7 Score=49.21 Aligned_cols=41 Identities=27% Similarity=0.345 Sum_probs=31.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCC
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTEN 221 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~ 221 (1209)
....+.|.|.+|+|||++|.+++.....+ -..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccCC
Confidence 35789999999999999999987655432 356788887443
No 383
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.27 E-value=0.48 Score=54.55 Aligned_cols=93 Identities=19% Similarity=0.364 Sum_probs=60.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-CHHHHHHHHHHHhCCCC------CCCCCh------
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-DVQKIQDKLASDLDLNF------DLNDSK------ 245 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~------~~~~~~------ 245 (1209)
+...++|.|.+|+|||+|+.++++.... .+-+.++|+-+.+.. .+.++++.+...-.... ..+...
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 4467899999999999999999888653 234678888887654 45566666554321110 111111
Q ss_pred HHHHHHHHHHHh--cCCeEEEEEeCCCcc
Q 038494 246 PHRAKQLCQRLT--KEKRVLIILDNIWKK 272 (1209)
Q Consensus 246 ~~~~~~l~~~l~--~~k~~LlvlDdv~~~ 272 (1209)
....-.+-+++. +++++|+++||+..-
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 122234566665 379999999998765
No 384
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.25 E-value=0.35 Score=59.54 Aligned_cols=86 Identities=14% Similarity=0.140 Sum_probs=57.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCC-----CCChHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDL-----NDSKPHRAKQLCQ 254 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 254 (1209)
.+++-|+|.+|+||||||.+++...... =..++|++..+.++.. .+++++.+.+. ....+.....+..
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHHH
Confidence 5788899999999999998877655432 3568999988877743 66777765321 1222333333333
Q ss_pred HHhcCCeEEEEEeCCCcc
Q 038494 255 RLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 255 ~l~~~k~~LlvlDdv~~~ 272 (1209)
.+.+++.-+||+|-+...
T Consensus 133 lv~~~~~~LVVIDSI~aL 150 (790)
T PRK09519 133 LIRSGALDIVVIDSVAAL 150 (790)
T ss_pred HhhcCCCeEEEEcchhhh
Confidence 344557789999998644
No 385
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.24 E-value=0.16 Score=48.83 Aligned_cols=39 Identities=21% Similarity=0.390 Sum_probs=28.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE 220 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~ 220 (1209)
++|.|+|..|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 489999999999999999999998753 355555565554
No 386
>PRK06217 hypothetical protein; Validated
Probab=93.23 E-value=0.14 Score=52.30 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=26.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhcccC--CEEEEE
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVMEDKVF--DKVVMA 216 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv 216 (1209)
.|.|.|.+|.||||+|+++++.... .+| |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeec
Confidence 4899999999999999999988754 233 456664
No 387
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.46 Score=49.64 Aligned_cols=95 Identities=20% Similarity=0.278 Sum_probs=61.7
Q ss_pred cccchhhHHHHHHHHHHHHhC-------------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcC
Q 038494 157 DFEAFDSRMKLFQDVVEALRN-------------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPD 223 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~ 223 (1209)
...++-|-+..+++|.+..+= ...+-|.++|.+|.|||-||++|+|.-... |-.++ .
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT--FlRvv-----G--- 252 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT--FLRVV-----G--- 252 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh--hhhhh-----h---
Confidence 355666888889999888751 124567799999999999999999887654 42211 0
Q ss_pred HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 224 VQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 224 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
.++ |-+.+|-. ....+.+.+.-....+.++++|.++..
T Consensus 253 -seL---iQkylGdG-------pklvRqlF~vA~e~apSIvFiDEIdAi 290 (440)
T KOG0726|consen 253 -SEL---IQKYLGDG-------PKLVRELFRVAEEHAPSIVFIDEIDAI 290 (440)
T ss_pred -HHH---HHHHhccc-------hHHHHHHHHHHHhcCCceEEeehhhhh
Confidence 011 22223211 456666666665567788888888654
No 388
>PRK00625 shikimate kinase; Provisional
Probab=93.19 E-value=0.073 Score=53.33 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.|.++||+|+||||+++.+++...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988764
No 389
>PRK14529 adenylate kinase; Provisional
Probab=93.19 E-value=0.27 Score=51.30 Aligned_cols=84 Identities=14% Similarity=0.134 Sum_probs=46.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcccCC--EEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCC
Q 038494 183 IGVHGMGGVGKTTLVKQIAKQVMEDKVFD--KVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEK 260 (1209)
Q Consensus 183 i~I~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 260 (1209)
|.|.|++|+||||+|+.++...... +.. .++.-.+..........+.++..-. ....+-....+.+++.+..
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G~-----lvpdei~~~lv~~~l~~~~ 76 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRGD-----LVPDDITIPMILETLKQDG 76 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhccC-----cchHHHHHHHHHHHHhccC
Confidence 7899999999999999999887642 221 1111122222223333344443211 1111334455666665322
Q ss_pred eEEEEEeCCCcc
Q 038494 261 RVLIILDNIWKK 272 (1209)
Q Consensus 261 ~~LlvlDdv~~~ 272 (1209)
..-+|||.+-..
T Consensus 77 ~~g~iLDGfPRt 88 (223)
T PRK14529 77 KNGWLLDGFPRN 88 (223)
T ss_pred CCcEEEeCCCCC
Confidence 456899998654
No 390
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.18 E-value=0.25 Score=55.82 Aligned_cols=48 Identities=29% Similarity=0.284 Sum_probs=37.8
Q ss_pred cchhhHHHHHHHHHHHHhCC--------------CceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 159 EAFDSRMKLFQDVVEALRND--------------KLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~~~--------------~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
..++|.++.++.+.-++... ..+.|.++|++|+|||++|+.++.....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35788888888887666531 1357889999999999999999988764
No 391
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.16 E-value=0.063 Score=49.59 Aligned_cols=28 Identities=39% Similarity=0.640 Sum_probs=19.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcccCCE
Q 038494 183 IGVHGMGGVGKTTLVKQIAKQVMEDKVFDK 212 (1209)
Q Consensus 183 i~I~G~~GiGKTtLa~~~~~~~~~~~~f~~ 212 (1209)
|.|+|.+|+|||++|+.++...... |..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~--f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS--FKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc--eeE
Confidence 6799999999999999999887643 643
No 392
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.08 E-value=0.54 Score=55.90 Aligned_cols=128 Identities=22% Similarity=0.267 Sum_probs=69.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhc------ccCCEEEEEEcCCC---------------c-C-HHHHHHHHHHHhC
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMED------KVFDKVVMAEVTEN---------------P-D-VQKIQDKLASDLD 236 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~------~~f~~~~wv~~s~~---------------~-~-~~~l~~~i~~~l~ 236 (1209)
...|+|+|+.|+|||||.+.+....... ..--.+.|++-... + + ...-.+..+.+++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 4579999999999999999997655322 00112233322110 0 1 1344455555555
Q ss_pred CCCCCCC------ChHHHHHHHHHHHhcCCeEEEEEeCCCcc------cCccccCCCCCCCCccccccccCCcEEEEecc
Q 038494 237 LNFDLND------SKPHRAKQLCQRLTKEKRVLIILDNIWKK------LGLEEIGIPFGDVDEKDRKQDLRRRTIILTSR 304 (1209)
Q Consensus 237 ~~~~~~~------~~~~~~~~l~~~l~~~k~~LlvlDdv~~~------~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 304 (1209)
.+.+... ..-+..+.....+.-.++-++|||.=.+. +.+++....+ .|+ ||+.|.
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f------------~Gt-vl~VSH 494 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF------------EGT-VLLVSH 494 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC------------CCe-EEEEeC
Confidence 4433221 11233444444444468899999975544 3333333333 344 888999
Q ss_pred chhhhcccCCcceEEEcC
Q 038494 305 SKHLLTNDMNSQKIFLIE 322 (1209)
Q Consensus 305 ~~~v~~~~~~~~~~~~l~ 322 (1209)
++..... .+..++.+.
T Consensus 495 Dr~Fl~~--va~~i~~~~ 510 (530)
T COG0488 495 DRYFLDR--VATRIWLVE 510 (530)
T ss_pred CHHHHHh--hcceEEEEc
Confidence 9876643 223444444
No 393
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.05 E-value=0.14 Score=53.87 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.|.|.|++|+||||+|+.+++...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999988764
No 394
>PRK04040 adenylate kinase; Provisional
Probab=93.04 E-value=0.088 Score=53.72 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=22.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.+|+|+|++|+||||+++.+++...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998874
No 395
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.01 E-value=0.089 Score=54.11 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
+.++|.|.|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998765
No 396
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.01 E-value=0.22 Score=52.84 Aligned_cols=64 Identities=20% Similarity=0.344 Sum_probs=46.4
Q ss_pred HHHHHHHh--CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHH
Q 038494 169 QDVVEALR--NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLA 232 (1209)
Q Consensus 169 ~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~ 232 (1209)
.+++..+. .+...+|+|+|.+|+|||||.-.+......+.+=-.++=|+-|.+++--.++.+=.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRi 103 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRI 103 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHh
Confidence 44454444 35567999999999999999999999987766555667777777776555544433
No 397
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.97 E-value=0.23 Score=58.15 Aligned_cols=87 Identities=24% Similarity=0.278 Sum_probs=52.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCC-ChHHHHHHHHHHHhc
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLND-SKPHRAKQLCQRLTK 258 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~~ 258 (1209)
..++.|.|.+|+|||||+.+++.....+ -..++|++..+. ..++.. -++.++....... ..+.....+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4689999999999999999999877632 246788876543 333322 2455554321100 001123344445544
Q ss_pred CCeEEEEEeCCCc
Q 038494 259 EKRVLIILDNIWK 271 (1209)
Q Consensus 259 ~k~~LlvlDdv~~ 271 (1209)
.+.-+||+|.+..
T Consensus 155 ~~~~lVVIDSIq~ 167 (446)
T PRK11823 155 EKPDLVVIDSIQT 167 (446)
T ss_pred hCCCEEEEechhh
Confidence 4667899998754
No 398
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=92.94 E-value=0.1 Score=53.32 Aligned_cols=29 Identities=41% Similarity=0.652 Sum_probs=25.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhc
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMED 207 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~ 207 (1209)
++.+|+|.|.+|.||||+|+.++......
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 45789999999999999999999988753
No 399
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.93 E-value=0.12 Score=53.40 Aligned_cols=29 Identities=38% Similarity=0.540 Sum_probs=24.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcc
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDK 208 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~ 208 (1209)
...|.++||+|.||||+.++++.....+.
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~ 47 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKK 47 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhcc
Confidence 45788999999999999999998877653
No 400
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.92 E-value=0.15 Score=55.56 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=40.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHH
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLA 232 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~ 232 (1209)
+..+++.|+|.+|+|||++|.++....... ...++||+..+. ..++.+.+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC--HHHHHHHHH
Confidence 346799999999999999999999998865 778999998775 344444433
No 401
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.91 E-value=0.22 Score=45.90 Aligned_cols=45 Identities=27% Similarity=0.405 Sum_probs=31.5
Q ss_pred chhhHHHHHHHHHHHHh----C---CCceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 160 AFDSRMKLFQDVVEALR----N---DKLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~----~---~~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
.++|..-..+.+++++. + .+.=|++.+|.+|+|||.+|+.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 34555544444544443 2 334588999999999999999999874
No 402
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.88 E-value=0.23 Score=50.69 Aligned_cols=51 Identities=24% Similarity=0.481 Sum_probs=36.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCC
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFD 240 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~ 240 (1209)
.|+|.|-||+||||+|...+.....++.| .+.=|+...++++. +++|...+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL~-------~~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNLP-------EALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCChH-------HhcCCCCC
Confidence 58999999999999999977777655433 35556666665543 55666553
No 403
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=92.87 E-value=0.15 Score=57.02 Aligned_cols=49 Identities=16% Similarity=0.273 Sum_probs=42.6
Q ss_pred cccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
+...++|.++.+..|.-.+.++...-|.|.|..|+||||+|+.+++-..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3668999999999999888888777788999999999999999987654
No 404
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=92.86 E-value=0.16 Score=56.81 Aligned_cols=47 Identities=23% Similarity=0.305 Sum_probs=39.9
Q ss_pred ccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 158 FEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
...++|.++.+..++-.+.++...-+.|.|..|+||||+++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 45788999999888777777666678899999999999999998665
No 405
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.86 E-value=0.25 Score=50.24 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=62.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEE---cCCCcCHHHHH------HHHHHHhCCCCCC------CC
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAE---VTENPDVQKIQ------DKLASDLDLNFDL------ND 243 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~---~s~~~~~~~l~------~~i~~~l~~~~~~------~~ 243 (1209)
+..+++|+|..|.|||||++.++-.... ..+.+++. +.. .+..... .++++.++..... -+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 3468999999999999999999865432 23333332 221 1221211 1245555543211 11
Q ss_pred ChHHHHHHHHHHHhcCCeEEEEEeCCCcccC---ccccCCCCCCCCccccccccCCcEEEEeccchhhh
Q 038494 244 SKPHRAKQLCQRLTKEKRVLIILDNIWKKLG---LEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLL 309 (1209)
Q Consensus 244 ~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~---~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 309 (1209)
....+.-.+.+.+. ..+-++++|+-...-+ .+.+...+..-. ...+..||++|.+....
T Consensus 100 ~G~~qrl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~~~------~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRRLA------RERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHH------HhcCCEEEEEeCCHHHH
Confidence 12233334555555 4778999998764422 111211111100 00266788888876543
No 406
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=92.84 E-value=0.28 Score=56.36 Aligned_cols=91 Identities=21% Similarity=0.279 Sum_probs=51.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHh-----CCCCCCCCCh------HH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDL-----DLNFDLNDSK------PH 247 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l-----~~~~~~~~~~------~~ 247 (1209)
....++|+|.+|+|||||++.++..... ..+++|..--...++.++........ ..-...+... ..
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 3458999999999999999888754432 23455554333344554444333322 1111111111 11
Q ss_pred HHHHHHHHHh-cCCeEEEEEeCCCcc
Q 038494 248 RAKQLCQRLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 248 ~~~~l~~~l~-~~k~~LlvlDdv~~~ 272 (1209)
..-.+-+++. +++.+|+++||+...
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchHHH
Confidence 2223445554 479999999998765
No 407
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=92.83 E-value=0.15 Score=56.71 Aligned_cols=48 Identities=25% Similarity=0.300 Sum_probs=39.0
Q ss_pred cccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
+...++|.++.++.+.-.+.+.+..-+.+.|.+|+||||+|+.++.-.
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 366789999998888765554444568899999999999999998765
No 408
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.77 E-value=0.88 Score=52.44 Aligned_cols=93 Identities=22% Similarity=0.367 Sum_probs=59.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-CHHHHHHHHHHHhCCCC------CCCCCh------
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-DVQKIQDKLASDLDLNF------DLNDSK------ 245 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~------~~~~~~------ 245 (1209)
+...++|.|.+|+|||||+..++...... +-+.++++-+.+.. .+.++++.+...-.... ..+...
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 45678999999999999999999876542 23567778776654 45666666654321111 111111
Q ss_pred HHHHHHHHHHHh--cCCeEEEEEeCCCcc
Q 038494 246 PHRAKQLCQRLT--KEKRVLIILDNIWKK 272 (1209)
Q Consensus 246 ~~~~~~l~~~l~--~~k~~LlvlDdv~~~ 272 (1209)
....-.+-+++. +++++|+++||+..-
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 112234556664 378999999999765
No 409
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.76 E-value=0.55 Score=50.34 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
+..|+|++|+|||+||..++....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567999999999999999997764
No 410
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.75 E-value=0.4 Score=47.79 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=46.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcC-Ce
Q 038494 183 IGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKE-KR 261 (1209)
Q Consensus 183 i~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-k~ 261 (1209)
+.|.|.+|.|||++|.+++... ...++++.-...++.+ +.+.|.+......... ...+....+.+.+.+. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w-~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDDE-MAERIARHRKRRPAHW-RTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCc-eEeecHHHHHHHHHhcCCC
Confidence 6799999999999999998651 2356777766666543 4444443222111111 1122233344444321 23
Q ss_pred EEEEEeCCCc
Q 038494 262 VLIILDNIWK 271 (1209)
Q Consensus 262 ~LlvlDdv~~ 271 (1209)
-.|++|.+..
T Consensus 75 ~~VLIDclt~ 84 (169)
T cd00544 75 DVVLIDCLTL 84 (169)
T ss_pred CEEEEEcHhH
Confidence 4799998753
No 411
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.65 E-value=0.093 Score=50.82 Aligned_cols=20 Identities=45% Similarity=0.748 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 038494 182 IIGVHGMGGVGKTTLVKQIA 201 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~ 201 (1209)
.|+|.|.+|+||||+|..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999997
No 412
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.63 E-value=0.22 Score=48.28 Aligned_cols=31 Identities=23% Similarity=0.483 Sum_probs=27.3
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHHHHhhc
Q 038494 177 NDKLNIIGVHGMGGVGKTTLVKQIAKQVMED 207 (1209)
Q Consensus 177 ~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~ 207 (1209)
.++..+|-++|.+|.||||+|..+++....+
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 4556799999999999999999999998764
No 413
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.62 E-value=0.12 Score=54.14 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQ 203 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~ 203 (1209)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 378999999999999999999854
No 414
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.60 E-value=0.032 Score=55.21 Aligned_cols=70 Identities=16% Similarity=0.268 Sum_probs=54.1
Q ss_pred ccccCCcccEEecccccccchhcccccccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEeccccc
Q 038494 813 HRKVFPLLESLSLYKLINLEAICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNKL 885 (1209)
Q Consensus 813 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 885 (1209)
....+++++.|.+.+|..+.+|+.+.+. +-.|+|+.|+|++|+.+++-. +..+.++++|+.|.|.+.+.+
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~--~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLG--GLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhc--ccccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCchhh
Confidence 3345788888889999999988876554 368999999999999888753 356677888888888876544
No 415
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.60 E-value=0.23 Score=57.75 Aligned_cols=101 Identities=24% Similarity=0.290 Sum_probs=54.6
Q ss_pred HHHHHhC-CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEE-EEEEcCCCc-CHHHHHHHHHHHh-CCCCCCCCC--
Q 038494 171 VVEALRN-DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKV-VMAEVTENP-DVQKIQDKLASDL-DLNFDLNDS-- 244 (1209)
Q Consensus 171 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~-~wv~~s~~~-~~~~l~~~i~~~l-~~~~~~~~~-- 244 (1209)
+++.+.. .......|+|.+|+|||||++.+++.... .+.+.. +.+-+.+.. .+.++.+.+-..+ ....+....
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~ 484 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDH 484 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHH
Confidence 4444431 34457899999999999999999987754 234433 344444432 2333322220000 111111111
Q ss_pred --hHHHHHHHHHHHh-cCCeEEEEEeCCCcc
Q 038494 245 --KPHRAKQLCQRLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 245 --~~~~~~~l~~~l~-~~k~~LlvlDdv~~~ 272 (1209)
.....-.+-+++. .++.+||++|++...
T Consensus 485 ~~~a~~ai~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 485 TTVAELAIERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCchHH
Confidence 1122233444553 589999999998755
No 416
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.59 E-value=0.88 Score=49.92 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=37.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASD 234 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~ 234 (1209)
..++.|.|.+|+||||++.+++.....+ +=..++|+++... ..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEcccC--HHHHHHHHHHH
Confidence 4588999999999999999998876533 1246888887653 45555555443
No 417
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.58 E-value=0.34 Score=56.84 Aligned_cols=88 Identities=26% Similarity=0.285 Sum_probs=52.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCC-ChHHHHHHHHHHHh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLND-SKPHRAKQLCQRLT 257 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~ 257 (1209)
...++.|.|.+|+|||||+.+++.....+ -..++|++..+. ..++.. -++.++....... ..+.....+.+.+.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 34689999999999999999998776543 135788876543 333322 2334443221100 00112234445554
Q ss_pred cCCeEEEEEeCCCc
Q 038494 258 KEKRVLIILDNIWK 271 (1209)
Q Consensus 258 ~~k~~LlvlDdv~~ 271 (1209)
+.+.-++|+|.+..
T Consensus 168 ~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 168 EENPQACVIDSIQT 181 (454)
T ss_pred hcCCcEEEEecchh
Confidence 44667889998854
No 418
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.54 E-value=0.21 Score=50.68 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..+++|.|..|.|||||++.++-...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 45899999999999999999986543
No 419
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.53 E-value=0.43 Score=56.88 Aligned_cols=88 Identities=17% Similarity=0.251 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCC---------------CC
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDL---------------ND 243 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~---------------~~ 243 (1209)
...++.|.|.+|+|||||+.+++.....+ -..+++++..+ +..++.+.+ +.++.+... ..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 34789999999999999999999887643 24566666544 455555553 455543211 01
Q ss_pred ChHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 038494 244 SKPHRAKQLCQRLTKEKRVLIILDNIWK 271 (1209)
Q Consensus 244 ~~~~~~~~l~~~l~~~k~~LlvlDdv~~ 271 (1209)
..++.+..+.+.+...+.-.+|+|.+..
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~~ 364 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLSA 364 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 1244556666666544556778887753
No 420
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.49 E-value=0.26 Score=55.67 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=49.8
Q ss_pred chhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHH
Q 038494 160 AFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLA 232 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~ 232 (1209)
.++|+++.+..+..++..++ .+.+.|.+|+|||++|+.++..... ..+++.+.......++.....
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l~~-----~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARALGL-----PFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHhCC-----CeEEEecCCCCCHHHhcCchh
Confidence 37788888888777766543 6789999999999999999988763 245677777777766655444
No 421
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.43 E-value=0.74 Score=52.93 Aligned_cols=90 Identities=19% Similarity=0.272 Sum_probs=54.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-CHHHHHHHHHHHhCCCC------CCCCCh------
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-DVQKIQDKLASDLDLNF------DLNDSK------ 245 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~------~~~~~~------ 245 (1209)
+...++|+|..|+|||||++.+++.... +.++++-+.+.. .+.++.+..+..-+... ..+...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~~----d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNADA----DVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC----CEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 4568999999999999999999876542 445556665543 34455444443322110 111111
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCcc
Q 038494 246 PHRAKQLCQRLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 246 ~~~~~~l~~~l~-~~k~~LlvlDdv~~~ 272 (1209)
....-.+-+++. +++.+|+++||+..-
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 112223555553 589999999999754
No 422
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.42 E-value=0.89 Score=52.60 Aligned_cols=93 Identities=23% Similarity=0.379 Sum_probs=59.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-CHHHHHHHHHHHhCCCC------CCCCCh------
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-DVQKIQDKLASDLDLNF------DLNDSK------ 245 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~------~~~~~~------ 245 (1209)
+...++|.|.+|+|||||+..++....... -+.++++-+.+.. .+.++++.+...-.... ..+...
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 456889999999999999999988776432 3567777776654 45666666654322110 111111
Q ss_pred HHHHHHHHHHHh--cCCeEEEEEeCCCcc
Q 038494 246 PHRAKQLCQRLT--KEKRVLIILDNIWKK 272 (1209)
Q Consensus 246 ~~~~~~l~~~l~--~~k~~LlvlDdv~~~ 272 (1209)
....-.+-+++. +++++||++|++..-
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 112233555553 479999999999765
No 423
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=92.38 E-value=0.83 Score=57.41 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=37.0
Q ss_pred ccchhhHHHHHHHHHHHHh--CCCceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 158 FEAFDSRMKLFQDVVEALR--NDKLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
...++|+...+..+.+.+. ......|.|+|..|+|||++|+.+++...
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 3467898888888776665 22334788999999999999999987653
No 424
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.34 E-value=0.13 Score=52.19 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
...|.|+|++|+||||+|+.+++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998874
No 425
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=92.32 E-value=3.1 Score=45.32 Aligned_cols=153 Identities=13% Similarity=0.133 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCC-----
Q 038494 165 MKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLN----- 238 (1209)
Q Consensus 165 ~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~----- 238 (1209)
...++.+...+..++. ....++| |+||+++|..++...-..+..+.. .++ .-..-+.+...-..+
T Consensus 8 ~~~~~~L~~~~~~~rl~hAyLf~G--~~G~~~~A~~~A~~llC~~~~~~~---~Cg----~C~~C~~i~~~~HPD~~~i~ 78 (290)
T PRK07276 8 PKVFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVL---PCG----HCRSCRLIEQGEFSDVTVIE 78 (290)
T ss_pred HHHHHHHHHHHHcCCcceeeeeeC--CccHHHHHHHHHHHHcCCCCCCCC---CCC----CCHHHHHHhcCCCCCeeeec
Confidence 3445666666666554 4566777 689999999998766432211000 000 000111111100000
Q ss_pred CCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccc-hhhhcc
Q 038494 239 FDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRS-KHLLTN 311 (1209)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~-~~v~~~ 311 (1209)
........+.++.+.+.+. .+++-++|+||++... ....+...+-... .++.+|++|.+ ..+..+
T Consensus 79 p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp--------~~t~~iL~t~~~~~lLpT 150 (290)
T PRK07276 79 PQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQ--------SEIYIFLLTNDENKVLPT 150 (290)
T ss_pred CCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCC--------CCeEEEEEECChhhCchH
Confidence 0001112456666666554 2566799999998763 4444433332222 44556666654 445555
Q ss_pred cCCcceEEEcCCCCHHHHHHHHHH
Q 038494 312 DMNSQKIFLIEVLSKEEALQFFEK 335 (1209)
Q Consensus 312 ~~~~~~~~~l~~L~~~e~~~lf~~ 335 (1209)
.......+.+.+ +.++..+.+..
T Consensus 151 I~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 151 IKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred HHHcceeeeCCC-cHHHHHHHHHH
Confidence 456667888876 66666666653
No 426
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=92.27 E-value=0.15 Score=61.37 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=40.2
Q ss_pred ccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 158 FEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
...++|.+..++.+...+.......|.|+|.+|+|||++|+.+++..+
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 557899999999999887665556778999999999999999987543
No 427
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.25 E-value=0.56 Score=53.72 Aligned_cols=90 Identities=19% Similarity=0.299 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-CHHHHHHHHHHHhCCCC------CCCCCh------
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-DVQKIQDKLASDLDLNF------DLNDSK------ 245 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~------~~~~~~------ 245 (1209)
....++|+|..|+|||||++.++.... .+.++.+-+.+.. .+.++.+.++..-+... ..+...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 446899999999999999999985432 3455666666654 34555555543322110 111111
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCcc
Q 038494 246 PHRAKQLCQRLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 246 ~~~~~~l~~~l~-~~k~~LlvlDdv~~~ 272 (1209)
....-.+-+++. +++++|+++||+..-
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 111223455553 479999999998765
No 428
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.24 E-value=0.1 Score=53.37 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
+|.|+|++|+||||+|+.++....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999988653
No 429
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.20 E-value=0.3 Score=47.72 Aligned_cols=117 Identities=20% Similarity=0.199 Sum_probs=61.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEc---CCCcCHHHHHHHHH--H--HhCCCCC-CCCChHH-----
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEV---TENPDVQKIQDKLA--S--DLDLNFD-LNDSKPH----- 247 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~---s~~~~~~~l~~~i~--~--~l~~~~~-~~~~~~~----- 247 (1209)
..|-|++-.|.||||.|...+-+..... + .+.++-. .........++.+- . +.+.... ...+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g-~-~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHG-Y-RVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 4678889999999999999988876532 2 3444332 22233333333320 0 0011100 0011111
Q ss_pred --HHHHHHHHHhcCCeEEEEEeCCCccc-----CccccCCCCCCCCccccccccCCcEEEEeccchh
Q 038494 248 --RAKQLCQRLTKEKRVLIILDNIWKKL-----GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKH 307 (1209)
Q Consensus 248 --~~~~l~~~l~~~k~~LlvlDdv~~~~-----~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 307 (1209)
..+...+.+..++--|||||++-..- ..+.+...+.... .+.-+|+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp--------~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP--------EDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC--------CCCEEEEECCCCC
Confidence 22233444444566799999986552 2222322222222 5668999999864
No 430
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.19 E-value=0.029 Score=55.50 Aligned_cols=45 Identities=24% Similarity=0.445 Sum_probs=39.0
Q ss_pred cccccchhhhhccCCcccccccccccccCCCcceEeeccCCCccc
Q 038494 948 IAFSELKVLILNYLSRLTSFCLENYTLEFPSLERVSMIRCPNMKT 992 (1209)
Q Consensus 948 ~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~ 992 (1209)
..+++++.|.+.+|..+.+++........|+|+.|+|++|+.+++
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 467889999999999999998877666789999999999999873
No 431
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.17 E-value=0.13 Score=52.03 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.++|.+.|++|.||||+|+.+.....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 35899999999999999999987753
No 432
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.17 E-value=0.4 Score=54.26 Aligned_cols=48 Identities=29% Similarity=0.277 Sum_probs=38.1
Q ss_pred cchhhHHHHHHHHHHHHhCC--------------CceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 159 EAFDSRMKLFQDVVEALRND--------------KLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~~~--------------~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
..++|.++.++.+..++... ....|.++|++|+|||++|+.++.....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~ 76 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35789988888888777420 1357899999999999999999988753
No 433
>PRK06851 hypothetical protein; Provisional
Probab=92.15 E-value=1.3 Score=49.96 Aligned_cols=44 Identities=32% Similarity=0.300 Sum_probs=33.8
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCC
Q 038494 177 NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTEN 221 (1209)
Q Consensus 177 ~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~ 221 (1209)
.+-.+++.|.|.+|+||||+++.++.....+ .++..++-|.+++
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~-G~~v~~~hC~~dP 254 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEER-GFDVEVYHCGFDP 254 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence 3445789999999999999999999998754 3555565555554
No 434
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.00 E-value=0.45 Score=45.22 Aligned_cols=106 Identities=16% Similarity=0.321 Sum_probs=64.4
Q ss_pred cChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEeccCcccCCc--ccccCCCCCCEEEccCCCCCccch-hccC
Q 038494 558 ISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQLPL-EIGQ 633 (1209)
Q Consensus 558 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~-~i~~ 633 (1209)
+++..|.++.+|+.+.+.. .+..++. .+..+.+|+.+.+.++ +..+ ..+.++..|+.+.+.. .+..++. .+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 5567788999999999985 5666655 6788889999999875 7766 6678888899999865 5555544 3566
Q ss_pred CCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCC
Q 038494 634 LAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGD 669 (1209)
Q Consensus 634 L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~ 669 (1209)
+++|+.+.+.. .+..++...+.+. +|+.+.+..
T Consensus 80 ~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence 88888888865 3556666667776 888887654
No 435
>PTZ00185 ATPase alpha subunit; Provisional
Probab=91.99 E-value=0.86 Score=52.69 Aligned_cols=93 Identities=15% Similarity=0.190 Sum_probs=54.6
Q ss_pred CceEEEEEcCCCChHHHHH-HHHHHHHhh-----cccCCEEEEEEcCCCcC-HHHHHHHHHHHhC-CCC------CCCCC
Q 038494 179 KLNIIGVHGMGGVGKTTLV-KQIAKQVME-----DKVFDKVVMAEVTENPD-VQKIQDKLASDLD-LNF------DLNDS 244 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa-~~~~~~~~~-----~~~f~~~~wv~~s~~~~-~~~l~~~i~~~l~-~~~------~~~~~ 244 (1209)
....+.|.|-.|+|||+|| -.+.+.... ...-+.++++.+++... +.+ +...++.-+ ... ...+.
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCCC
Confidence 3467899999999999997 555665522 12335678888887654 333 333333333 110 01111
Q ss_pred hH------HHHHHHHHHHh-cCCeEEEEEeCCCcc
Q 038494 245 KP------HRAKQLCQRLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 245 ~~------~~~~~l~~~l~-~~k~~LlvlDdv~~~ 272 (1209)
.. -..-.+-+++. +++..|+|+||+..-
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 11 11223445553 478999999999765
No 436
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.99 E-value=0.17 Score=50.18 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
..++++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 3568999999999999999999988765
No 437
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=91.95 E-value=0.93 Score=43.64 Aligned_cols=27 Identities=33% Similarity=0.521 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
...++|.|++|+||+||.+.++.-...
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhccCC
Confidence 457999999999999999999976554
No 438
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=91.95 E-value=1.2 Score=49.25 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-CHHHHHHHHHHHh----CCCC---------CCCCC
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-DVQKIQDKLASDL----DLNF---------DLNDS 244 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l----~~~~---------~~~~~ 244 (1209)
+...++|.|..|+|||+|++++++... -+.++++-+.+.. .+.++++++-+.- +... .....
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p 231 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMP 231 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCC
Confidence 445899999999999999999988643 3578888887654 4555555543211 1110 00111
Q ss_pred h------HHHHHHHHHHHh-cCCeEEEEEeCCCc
Q 038494 245 K------PHRAKQLCQRLT-KEKRVLIILDNIWK 271 (1209)
Q Consensus 245 ~------~~~~~~l~~~l~-~~k~~LlvlDdv~~ 271 (1209)
. ....-.+-+++. .++.+|+++|++..
T Consensus 232 ~~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~tR 265 (369)
T cd01134 232 VAAREASIYTGITIAEYFRDMGYNVALMADSTSR 265 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChhH
Confidence 0 111223445553 47889999999754
No 439
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.93 E-value=1.5 Score=48.91 Aligned_cols=38 Identities=29% Similarity=0.613 Sum_probs=29.5
Q ss_pred HHHHHHh--CCCceEEEEEcCCCChHHHHHHHHHHHHhhc
Q 038494 170 DVVEALR--NDKLNIIGVHGMGGVGKTTLVKQIAKQVMED 207 (1209)
Q Consensus 170 ~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~ 207 (1209)
.+.+.+. .....+|+|.|.+|+||||++..+....+..
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3444443 3456799999999999999999998887754
No 440
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=91.93 E-value=0.41 Score=60.21 Aligned_cols=179 Identities=17% Similarity=0.223 Sum_probs=90.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhh-c-------------ccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCC
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVME-D-------------KVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDS 244 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~-~-------------~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~ 244 (1209)
+.+++.|+|+.+.||||+.+.++-..-- + ..|+. ++..++...++..-...+...
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lStfS~~---------- 394 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSLSTFSGH---------- 394 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhchhHHHHH----------
Confidence 4578999999999999999988744211 0 11222 223333332222211111111
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeCCCcccCc---ccc----CCCCCCCCccccccccCCcEEEEeccchhhhcccCCcc-
Q 038494 245 KPHRAKQLCQRLTKEKRVLIILDNIWKKLGL---EEI----GIPFGDVDEKDRKQDLRRRTIILTSRSKHLLTNDMNSQ- 316 (1209)
Q Consensus 245 ~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~---~~l----~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~~- 316 (1209)
......+...+ +.+-|+++|....--+. ..+ ...+. ..|+.+|+||....+........
T Consensus 395 -m~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l~----------~~~~~vIitTH~~el~~~~~~~~~ 461 (782)
T PRK00409 395 -MTNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISILEYLR----------KRGAKIIATTHYKELKALMYNREG 461 (782)
T ss_pred -HHHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH----------HCCCEEEEECChHHHHHHHhcCCC
Confidence 11222233333 46789999998754221 111 11111 15788999999977653222111
Q ss_pred -eEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHhcCChhHHHHHHHHHhc
Q 038494 317 -KIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVANALKNKKLPVWKDALTQLRN 388 (1209)
Q Consensus 317 -~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~~~~l~~ 388 (1209)
....+. ++. +......+...+.. -...|-+|++++ |+|-.+.--|..+-......++.+++.+..
T Consensus 462 v~~~~~~-~d~-~~l~~~Ykl~~G~~----g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 462 VENASVE-FDE-ETLRPTYRLLIGIP----GKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred eEEEEEE-Eec-CcCcEEEEEeeCCC----CCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 111111 111 11100000000111 135677888887 788888888877765555567777776654
No 441
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.92 E-value=0.14 Score=52.15 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.+++|+|++|+||||+++.++....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 442
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=91.92 E-value=0.16 Score=48.62 Aligned_cols=25 Identities=36% Similarity=0.604 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
.++++|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4789999999999999999887776
No 443
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.92 E-value=1.7 Score=48.40 Aligned_cols=38 Identities=37% Similarity=0.465 Sum_probs=29.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEc
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEV 218 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 218 (1209)
+..+|+++|++|+||||++..++.....+. ..+..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g--~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQG--KKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC--CeEEEEec
Confidence 457999999999999999999998876431 24554544
No 444
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.87 E-value=0.2 Score=51.14 Aligned_cols=38 Identities=29% Similarity=0.431 Sum_probs=30.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcC
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVT 219 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s 219 (1209)
.++|.|+|++|+|||||+..+......+ |..+++.+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~--~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDK--FGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTT--EEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccc--cccceeeccc
Confidence 4789999999999999999999887643 7655555543
No 445
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=91.87 E-value=0.12 Score=52.24 Aligned_cols=23 Identities=39% Similarity=0.707 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
+|+|.|.+|.||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 446
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=91.83 E-value=0.69 Score=49.04 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=22.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
+|+|.|.+|.||||+|+.+.+..+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999987754
No 447
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=91.83 E-value=0.17 Score=63.36 Aligned_cols=186 Identities=12% Similarity=0.129 Sum_probs=88.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHH-hhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCC----CCC--hHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQV-MEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDL----NDS--KPHRAKQ 251 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~-~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~----~~~--~~~~~~~ 251 (1209)
+.+++.|+|+.|.||||+.+.+.-.. ..+. ..+|++.....+ ..+.++...++..... ... .......
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~----G~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQS----GIPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHh----CCCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 34789999999999999999998652 1111 112222111000 0011111111110000 000 0111222
Q ss_pred HHHHHhcCCeEEEEEeCCCcccCc---ccc----CCCCCCCCccccccccCCcEEEEeccchhhhcccCCcc--eEEEcC
Q 038494 252 LCQRLTKEKRVLIILDNIWKKLGL---EEI----GIPFGDVDEKDRKQDLRRRTIILTSRSKHLLTNDMNSQ--KIFLIE 322 (1209)
Q Consensus 252 l~~~l~~~k~~LlvlDdv~~~~~~---~~l----~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~~--~~~~l~ 322 (1209)
+...+ +.+-|+++|....--+. ..+ ...+. ..|+.+|+||....+........ ....+.
T Consensus 396 il~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~----------~~g~~viitTH~~eL~~~~~~~~~v~~~~~~ 463 (771)
T TIGR01069 396 ILSKT--TENSLVLFDELGAGTDPDEGSALAISILEYLL----------KQNAQVLITTHYKELKALMYNNEGVENASVL 463 (771)
T ss_pred HHHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH----------hcCCEEEEECChHHHHHHhcCCCCeEEeEEE
Confidence 33322 46899999998764221 111 11111 15788999999877643221111 111111
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHhcCChhHHHHHHHHHhc
Q 038494 323 VLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVANALKNKKLPVWKDALTQLRN 388 (1209)
Q Consensus 323 ~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~~~~l~~ 388 (1209)
++.+ ... |..+.-... + -...|-+|++++ |+|-.+.--|..+.+.....++.+++.+..
T Consensus 464 -~d~~-~l~-p~Ykl~~G~-~--g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 464 -FDEE-TLS-PTYKLLKGI-P--GESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred -EcCC-CCc-eEEEECCCC-C--CCcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1111 000 000000011 1 135677888887 788888888877765555566777776654
No 448
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=91.81 E-value=0.31 Score=53.78 Aligned_cols=49 Identities=29% Similarity=0.411 Sum_probs=37.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDK 230 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~ 230 (1209)
.+++.+.|.||+||||+|.+.+-...... ..+.-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999887777543 44777777777666665544
No 449
>PRK15453 phosphoribulokinase; Provisional
Probab=91.80 E-value=1 Score=48.26 Aligned_cols=27 Identities=37% Similarity=0.486 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
+..+|+|.|.+|.||||+|+.+++...
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999997664
No 450
>PRK14531 adenylate kinase; Provisional
Probab=91.77 E-value=0.23 Score=50.61 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..|.|.|++|.||||+|+.++....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999988764
No 451
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.77 E-value=0.13 Score=50.26 Aligned_cols=24 Identities=42% Similarity=0.664 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
+|.|.|.+|+||||+|+.++....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 452
>PRK13947 shikimate kinase; Provisional
Probab=91.76 E-value=0.14 Score=51.65 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=22.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
.|.|+|++|+||||+|+.+++....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999988753
No 453
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=91.67 E-value=0.36 Score=51.17 Aligned_cols=93 Identities=17% Similarity=0.197 Sum_probs=57.1
Q ss_pred cchhhHHHHHHHHHHHHh----CC---------CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHH
Q 038494 159 EAFDSRMKLFQDVVEALR----ND---------KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQ 225 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~----~~---------~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~ 225 (1209)
+.+-|--+.+.++.+.+. ++ ....+.|||++|.|||-+|+.|+....+. |-. +..+.
T Consensus 132 ~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~n--fl~---v~ss~----- 201 (388)
T KOG0651|consen 132 ENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVN--FLK---VVSSA----- 201 (388)
T ss_pred HHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCc--eEE---eeHhh-----
Confidence 344455555666666554 11 23578999999999999999999887764 311 11110
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 226 KIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 226 ~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
|.. ....+....+++..++..+-.++.|..||++..
T Consensus 202 -----lv~------kyiGEsaRlIRemf~yA~~~~pciifmdeiDAi 237 (388)
T KOG0651|consen 202 -----LVD------KYIGESARLIRDMFRYAREVIPCIIFMDEIDAI 237 (388)
T ss_pred -----hhh------hhcccHHHHHHHHHHHHhhhCceEEeehhhhhh
Confidence 110 111122456666666666666799999998753
No 454
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.65 E-value=0.13 Score=50.55 Aligned_cols=23 Identities=43% Similarity=0.667 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
+|.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36899999999999999998764
No 455
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.62 E-value=0.65 Score=55.44 Aligned_cols=86 Identities=17% Similarity=0.153 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccC-CEEEEEEcCCCcCHHHHHHHHHHHhCCCCC-----------------
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVF-DKVVMAEVTENPDVQKIQDKLASDLDLNFD----------------- 240 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~----------------- 240 (1209)
..+++.|.|.+|+||||+|.+++..-..+ + ..++||+..+ +..++.+.+ +.++.+..
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~--~ge~~lyvs~eE--~~~~l~~~~-~~~G~~~~~~~~~g~l~~~~~~~~~ 94 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH--FDEPGVFVTFEE--SPQDIIKNA-RSFGWDLQKLVDEGKLFILDASPDP 94 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEec--CHHHHHHHH-HHcCCCHHHHhhcCceEEEecCchh
Confidence 35799999999999999999997665332 2 4677888754 344444443 33332210
Q ss_pred ------CCCChHHHHHHHHHHHhcCCeEEEEEeCC
Q 038494 241 ------LNDSKPHRAKQLCQRLTKEKRVLIILDNI 269 (1209)
Q Consensus 241 ------~~~~~~~~~~~l~~~l~~~k~~LlvlDdv 269 (1209)
...+.......+...+..+++-.+|+|-+
T Consensus 95 ~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl 129 (484)
T TIGR02655 95 EGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSV 129 (484)
T ss_pred ccccccccCCHHHHHHHHHHHHHHhCCcEEEEeeh
Confidence 01122344555666666556667888854
No 456
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.61 E-value=0.26 Score=49.17 Aligned_cols=24 Identities=42% Similarity=0.643 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhh
Q 038494 183 IGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 183 i~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
|.|+|.+|+||||+++.+++..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999988854
No 457
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.58 E-value=0.17 Score=52.08 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
...+++|+|.+|.|||||++.++--.+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 346899999999999999999986554
No 458
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=91.51 E-value=0.5 Score=48.73 Aligned_cols=36 Identities=31% Similarity=0.414 Sum_probs=27.5
Q ss_pred HHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhc
Q 038494 172 VEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMED 207 (1209)
Q Consensus 172 ~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~ 207 (1209)
+..+...+.+++.|.|.+|+||||+++.+.......
T Consensus 10 ~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 10 VRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 333333445788999999999999999998877654
No 459
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.49 E-value=0.16 Score=51.51 Aligned_cols=25 Identities=36% Similarity=0.700 Sum_probs=22.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
+|+|.|.+|.||||+|+.++.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988763
No 460
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=91.46 E-value=0.46 Score=54.42 Aligned_cols=41 Identities=32% Similarity=0.442 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhc
Q 038494 167 LFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMED 207 (1209)
Q Consensus 167 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~ 207 (1209)
..+.+++.+.......+.|.|.||+|||++.+.+.+..+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~ 49 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR 49 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc
Confidence 44556666666666788999999999999999999888653
No 461
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.45 E-value=0.14 Score=53.24 Aligned_cols=23 Identities=48% Similarity=0.790 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
+|+|.|.+|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998775
No 462
>PRK13949 shikimate kinase; Provisional
Probab=91.44 E-value=0.17 Score=50.64 Aligned_cols=24 Identities=42% Similarity=0.448 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.|.|+|+.|.||||+++.+++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998875
No 463
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=91.32 E-value=0.66 Score=49.15 Aligned_cols=98 Identities=26% Similarity=0.279 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHHHHh----C---CCceEEEEEcCCCChHHHHHHHHHHHHhhcc-cCCEE-EEEEcCCCcCHHHHHHHH
Q 038494 161 FDSRMKLFQDVVEALR----N---DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDK-VFDKV-VMAEVTENPDVQKIQDKL 231 (1209)
Q Consensus 161 ~~gR~~~~~~l~~~L~----~---~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~-~f~~~-~wv~~s~~~~~~~l~~~i 231 (1209)
+.|..-..+.++..+. + .+.=+++.+|.+|+||.-+++.+++...... +=+.| .++..-+-+....+.
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie--- 160 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIE--- 160 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHH---
Confidence 4465555555555554 2 2345899999999999999999998764321 00000 011100111111100
Q ss_pred HHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 232 ASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
.-.++....++...+.-+|-|+|+|+|+..
T Consensus 161 -----------~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 161 -----------DYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred -----------HHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 001344445555555668999999999976
No 464
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.30 E-value=0.99 Score=48.52 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=35.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLA 232 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~ 232 (1209)
..++.|.|.+|+|||++|.+++.....+.. ..++|++... +..++...+.
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g-~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQG-KPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CceEEEeCCC--CHHHHHHHHH
Confidence 468999999999999999999887765312 3567777655 3455555554
No 465
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=91.21 E-value=0.31 Score=47.62 Aligned_cols=34 Identities=24% Similarity=0.484 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 168 FQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 168 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
+++|.+++.+ ++++++|.+|+|||||+..+..+.
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 5667777644 689999999999999999886553
No 466
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.19 E-value=0.2 Score=51.34 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
..+|.|.|.+|+||||+|+.++++.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999998875
No 467
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=91.18 E-value=0.75 Score=53.40 Aligned_cols=93 Identities=22% Similarity=0.332 Sum_probs=59.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-CHHHHHHHHHHHhCCCC-------------CCCCC
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-DVQKIQDKLASDLDLNF-------------DLNDS 244 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~-------------~~~~~ 244 (1209)
+...++|.|-+|+|||+|+..++...... +-+.++++-+.+.. .+.+++..+...-.... .....
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p 238 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 238 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCC
Confidence 44678999999999999999998874421 12678888887664 45666666655211110 00111
Q ss_pred h------HHHHHHHHHHHhc-C-CeEEEEEeCCCcc
Q 038494 245 K------PHRAKQLCQRLTK-E-KRVLIILDNIWKK 272 (1209)
Q Consensus 245 ~------~~~~~~l~~~l~~-~-k~~LlvlDdv~~~ 272 (1209)
. ....-.+-+++.. + +++||++||+..-
T Consensus 239 ~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 239 PGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 0 1223346667753 4 4899999999765
No 468
>PRK14530 adenylate kinase; Provisional
Probab=91.16 E-value=0.19 Score=52.94 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
+.|.|+|++|+||||+|+.++....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987764
No 469
>PRK08149 ATP synthase SpaL; Validated
Probab=91.16 E-value=0.88 Score=52.26 Aligned_cols=90 Identities=19% Similarity=0.274 Sum_probs=53.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC-CcCHHHHHHHHHHHhCCC-------CCCCCC-----h
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE-NPDVQKIQDKLASDLDLN-------FDLNDS-----K 245 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~l~~~i~~~l~~~-------~~~~~~-----~ 245 (1209)
+...++|+|.+|+|||||+..++.... .+.++...+.. ..++.++........... ..+.+. .
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 456899999999999999998886543 23333344433 234556666665533211 011111 0
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCcc
Q 038494 246 PHRAKQLCQRLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 246 ~~~~~~l~~~l~-~~k~~LlvlDdv~~~ 272 (1209)
......+-+++. ++|++||++||+...
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 122234455553 589999999998765
No 470
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.15 E-value=0.27 Score=50.90 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=50.3
Q ss_pred CCCCcEEEecCcccc-----cccccccCCCCCcEEeccCccc-----------CCc-ccccCCCCCCEEEccCCCCC-cc
Q 038494 566 TEDLKVLSLSGIHFS-----SLSSSLGHLINLQTLCLDWCQL-----------EDV-AAIGQLKKLEILSFRYSDIK-QL 627 (1209)
Q Consensus 566 l~~Lr~L~L~~~~i~-----~lp~~i~~l~~L~~L~l~~~~l-----------~~l-~~i~~L~~L~~L~l~~~~~~-~l 627 (1209)
+..+..++||+|.|. .+...|.+-.+|+..+++.-.. .-+ +.+-++++|+..+++.|-+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 556666777777664 2444556666677766665431 112 56667788888888887544 33
Q ss_pred ch----hccCCCCCCEEeccCC
Q 038494 628 PL----EIGQLAQLQLLDLSNC 645 (1209)
Q Consensus 628 p~----~i~~L~~L~~L~l~~~ 645 (1209)
|+ -|.+-+.|.||.+.+|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred chHHHHHHhcCCCceeEEeecC
Confidence 43 3566778888888874
No 471
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=91.10 E-value=0.41 Score=51.19 Aligned_cols=35 Identities=31% Similarity=0.412 Sum_probs=23.1
Q ss_pred HHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 168 FQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 168 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
.+.+..++.... +..|+|++|.||||++..+....
T Consensus 7 ~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 7 REAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 344444443322 68899999999998877777766
No 472
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=91.08 E-value=0.24 Score=51.69 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=27.0
Q ss_pred HhCCCceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 175 LRNDKLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 175 L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
+...+.++|+++|..|.|||||..++.+...
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4456789999999999999999999988754
No 473
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=91.05 E-value=0.19 Score=49.62 Aligned_cols=23 Identities=43% Similarity=0.512 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHh
Q 038494 183 IGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 183 i~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
|.|+|++|.||||+|+.++....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988764
No 474
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=91.01 E-value=0.21 Score=50.27 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
...|.|+|+.|.||||+|+.+++...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34699999999999999999998754
No 475
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=90.98 E-value=0.51 Score=54.25 Aligned_cols=92 Identities=22% Similarity=0.292 Sum_probs=54.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCC------CCCCCh------
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNF------DLNDSK------ 245 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~------~~~~~~------ 245 (1209)
.....++|+|..|.|||||++.++...... ..++...-.+...+.+.++..+..-+... ..+...
T Consensus 154 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 154 GIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 345688999999999999999998765431 23443322333566666665555432211 011111
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCcc
Q 038494 246 PHRAKQLCQRLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 246 ~~~~~~l~~~l~-~~k~~LlvlDdv~~~ 272 (1209)
......+-+++. ++++.||++||+..-
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 111223444443 478999999998765
No 476
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=90.93 E-value=0.82 Score=48.28 Aligned_cols=59 Identities=14% Similarity=0.099 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHhhccccchHHHHHHHHHHHHHHHhhhchhhhhhh
Q 038494 37 SYIAELKVQVKELEYKRERVGIPVREATQQRDEIYKDVADWLNNVDEFISEGVAKSIIDDE 97 (1209)
Q Consensus 37 ~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~~~~~wl~~~~~~~~d~~~ed~ld~~ 97 (1209)
+.+.-++.+++.++++++.+|.||++.-+..+..-+..+.++.++-..||++ |.++|.-
T Consensus 314 dSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyev--EYVVDaC 372 (402)
T PF12061_consen 314 DSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEV--EYVVDAC 372 (402)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhhe--eeeeehh
Confidence 4477889999999999999999999864332334455999999999999999 9999843
No 477
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=90.87 E-value=0.42 Score=52.91 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=32.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHH
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQ 228 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~ 228 (1209)
+++.+.|-||+||||+|...+-....++ ..+.-++.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHh
Confidence 6889999999999999999887776542 245666666555544443
No 478
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=90.85 E-value=0.33 Score=48.41 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHhC--CCceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 162 DSRMKLFQDVVEALRN--DKLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 162 ~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
+|....+.++++.+.. .....|.|+|..|+||+.+|+.+++..
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 5666667777766651 222466799999999999999998854
No 479
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=90.85 E-value=1.3 Score=49.10 Aligned_cols=90 Identities=23% Similarity=0.323 Sum_probs=51.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcC-CCcCHHHHHHHHHHHhCCC-------CCCCCCh-----
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVT-ENPDVQKIQDKLASDLDLN-------FDLNDSK----- 245 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s-~~~~~~~l~~~i~~~l~~~-------~~~~~~~----- 245 (1209)
....++|+|..|.|||||.+.++..... +.....-+. ...++.++.......-+.. ..+.+..
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTTA----DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 3468899999999999999988865542 233333333 2335555555555432211 0111110
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCcc
Q 038494 246 PHRAKQLCQRLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 246 ~~~~~~l~~~l~-~~k~~LlvlDdv~~~ 272 (1209)
....-.+-+++. ++|.+|+++||+...
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 112223444443 479999999998654
No 480
>PRK03846 adenylylsulfate kinase; Provisional
Probab=90.82 E-value=0.35 Score=50.07 Aligned_cols=29 Identities=24% Similarity=0.419 Sum_probs=25.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
.+..+|+|+|++|.||||+|+.+......
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999999987753
No 481
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=90.82 E-value=0.17 Score=50.63 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=19.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 038494 183 IGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 183 i~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998775
No 482
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=90.80 E-value=0.22 Score=48.93 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=25.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEE
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVM 215 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w 215 (1209)
+++|+|+.|+||||++..+....+.+ .+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 57899999999999999999988753 3443333
No 483
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=90.80 E-value=2 Score=49.05 Aligned_cols=94 Identities=15% Similarity=0.194 Sum_probs=68.9
Q ss_pred hhhHHHHHHHHHHHHh---CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-------CHHHHHHH
Q 038494 161 FDSRMKLFQDVVEALR---NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-------DVQKIQDK 230 (1209)
Q Consensus 161 ~~gR~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-------~~~~l~~~ 230 (1209)
-|||+.+++.+.+.|. +++..+-.|.|.=|.|||.+.+.+.+....++ | .+..+.++... ....+++.
T Consensus 27 ~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~~~~-f-vvs~v~ls~e~~lh~~~g~~~~~Yr~ 104 (416)
T PF10923_consen 27 AVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERALEKG-F-VVSEVDLSPERPLHGTGGQLEALYRE 104 (416)
T ss_pred eechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHHHHcC-C-EEEEEecCCCcccccccccHHHHHHH
Confidence 4799999999998876 56677889999999999999999998887643 4 46677777632 46779999
Q ss_pred HHHHhCCCCCCCC-ChHHHHHHHHHHH
Q 038494 231 LASDLDLNFDLND-SKPHRAKQLCQRL 256 (1209)
Q Consensus 231 i~~~l~~~~~~~~-~~~~~~~~l~~~l 256 (1209)
|++.+........ .....++.+...+
T Consensus 105 l~~nL~t~~~p~G~al~~ild~wi~~~ 131 (416)
T PF10923_consen 105 LMRNLSTKTKPEGGALRSILDRWIYNL 131 (416)
T ss_pred HHHhcCCCCCCCchHHHHHHHHHHHHH
Confidence 9999976654433 2233344443333
No 484
>PRK06936 type III secretion system ATPase; Provisional
Probab=90.79 E-value=1 Score=51.71 Aligned_cols=91 Identities=20% Similarity=0.316 Sum_probs=55.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-CHHHHHHHHHHHhCCCC------CCCCChH----
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-DVQKIQDKLASDLDLNF------DLNDSKP---- 246 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~------~~~~~~~---- 246 (1209)
.+...++|.|..|+|||||.+.+++... .+.++++-+.+.. .+.++.+..+..-+... ..+....
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 3456899999999999999999987654 3567777776654 34444444332211110 1111111
Q ss_pred --HHHHHHHHHHh-cCCeEEEEEeCCCcc
Q 038494 247 --HRAKQLCQRLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 247 --~~~~~l~~~l~-~~k~~LlvlDdv~~~ 272 (1209)
...-.+-+++. +++++|+++||+..-
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 11223555553 589999999998754
No 485
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=90.77 E-value=0.75 Score=52.78 Aligned_cols=94 Identities=21% Similarity=0.217 Sum_probs=59.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhh------c-----ccCCEEEEEEcCCCcCHHHHHHHHHHHhC-CCC------C
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVME------D-----KVFDKVVMAEVTENPDVQKIQDKLASDLD-LNF------D 240 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~------~-----~~f~~~~wv~~s~~~~~~~l~~~i~~~l~-~~~------~ 240 (1209)
....++|.|-+|+|||||+..+++.... . +.-..++++.+.+.....+.+...+..-+ ... .
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 4467899999999999999999877651 0 00015677777777655555555555444 111 1
Q ss_pred CCCCh------HHHHHHHHHHHh--cCCeEEEEEeCCCcc
Q 038494 241 LNDSK------PHRAKQLCQRLT--KEKRVLIILDNIWKK 272 (1209)
Q Consensus 241 ~~~~~------~~~~~~l~~~l~--~~k~~LlvlDdv~~~ 272 (1209)
.+... ....-.+-+++. +++++|+++||+..-
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 11111 122234666666 479999999999654
No 486
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.77 E-value=0.22 Score=52.05 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
...+|+|+|++|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998864
No 487
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=90.77 E-value=0.63 Score=46.52 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
.+.|.|.+|.||||+|..++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 68999999999999999998764
No 488
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=90.76 E-value=0.53 Score=47.67 Aligned_cols=117 Identities=20% Similarity=0.179 Sum_probs=63.0
Q ss_pred HHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhc-ccCC--EEEEEEcCCCcCHHHHHHHHHHHhC-CCCC------
Q 038494 171 VVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMED-KVFD--KVVMAEVTENPDVQKIQDKLASDLD-LNFD------ 240 (1209)
Q Consensus 171 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~-~~f~--~~~wv~~s~~~~~~~l~~~i~~~l~-~~~~------ 240 (1209)
+++-+-+...--..|.|++|+||||+.+.+++-.... ..|- .+.-++-+.+ |+..+. .+..
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersE---------Iag~~~gvpq~~~g~R~ 198 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSE---------IAGCLNGVPQHGRGRRM 198 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccch---------hhccccCCchhhhhhhh
Confidence 4444444444457899999999999999999877642 2232 3333433322 211110 0000
Q ss_pred CCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCccccccccCCcEEEEeccchh
Q 038494 241 LNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKH 307 (1209)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 307 (1209)
+..+..-...-+......-.+=++|+|.+-..++-.++.-++. .|-+++.|...-.
T Consensus 199 dVld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~~-----------~GVkli~TaHG~~ 254 (308)
T COG3854 199 DVLDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTALH-----------AGVKLITTAHGNG 254 (308)
T ss_pred hhcccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHh-----------cCcEEEEeecccc
Confidence 0000011222233333334567899999988866555443332 6777777776543
No 489
>PRK13975 thymidylate kinase; Provisional
Probab=90.75 E-value=0.22 Score=51.54 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=23.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
.+|+|.|+.|+||||+|+.+++....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999988764
No 490
>PRK13695 putative NTPase; Provisional
Probab=90.75 E-value=0.34 Score=49.03 Aligned_cols=34 Identities=41% Similarity=0.492 Sum_probs=25.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEE
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMA 216 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv 216 (1209)
.|+|+|.+|+|||||++.+++.... ..+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 4789999999999999999887654 224434444
No 491
>PHA02774 E1; Provisional
Probab=90.73 E-value=0.43 Score=55.97 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=35.5
Q ss_pred HHHHHHHHHhC-CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEc
Q 038494 167 LFQDVVEALRN-DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEV 218 (1209)
Q Consensus 167 ~~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 218 (1209)
.+..+..++.. ++...+.|+|++|+|||.+|..+.+-.. -..+.|++.
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~ 468 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNS 468 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEEC
Confidence 45666666654 3356899999999999999999988764 234567765
No 492
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=90.70 E-value=0.18 Score=48.51 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.|+|+|++|+|||||++.+++...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999987643
No 493
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=90.66 E-value=0.22 Score=46.55 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHh
Q 038494 183 IGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 183 i~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
|.|+|..|+|||||.+.++....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999986654
No 494
>PRK09099 type III secretion system ATPase; Provisional
Probab=90.66 E-value=0.97 Score=52.25 Aligned_cols=92 Identities=18% Similarity=0.269 Sum_probs=55.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCC------CCCCCh------
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNF------DLNDSK------ 245 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~------~~~~~~------ 245 (1209)
.+...++|.|..|.|||||++.++...... ..+++..-.....+.++.+.+...-+... ..+...
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 345689999999999999999998655432 24444443344456666666554322111 111111
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCcc
Q 038494 246 PHRAKQLCQRLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 246 ~~~~~~l~~~l~-~~k~~LlvlDdv~~~ 272 (1209)
....-.+-+++. +++++|+++||+...
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 112223555554 578999999998765
No 495
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=90.66 E-value=1.2 Score=51.69 Aligned_cols=94 Identities=20% Similarity=0.191 Sum_probs=59.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccC--CEEEEEEcCCCc-CHHHHHHHHHHHhCCCC------CCCC-C----
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVF--DKVVMAEVTENP-DVQKIQDKLASDLDLNF------DLND-S---- 244 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~------~~~~-~---- 244 (1209)
....++|.|-+|+|||||+..+++.....+.+ ..++++-+.+.. .+.++++.+...-.... ..+. .
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 34578999999999999999999876542111 156677776654 45666666654322111 1111 1
Q ss_pred -hHHHHHHHHHHHh--cCCeEEEEEeCCCcc
Q 038494 245 -KPHRAKQLCQRLT--KEKRVLIILDNIWKK 272 (1209)
Q Consensus 245 -~~~~~~~l~~~l~--~~k~~LlvlDdv~~~ 272 (1209)
.......+-+++. +++++|+++||+..-
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 1222234667776 589999999998765
No 496
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=90.66 E-value=1.1 Score=49.74 Aligned_cols=30 Identities=23% Similarity=0.517 Sum_probs=26.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhhc
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQVMED 207 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~ 207 (1209)
....+|+|.|.+|+||||++..+......+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 456899999999999999999999877653
No 497
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=90.63 E-value=0.19 Score=51.24 Aligned_cols=24 Identities=42% Similarity=0.609 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
++|+|+|+.|+||||+|+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998753
No 498
>PRK05973 replicative DNA helicase; Provisional
Probab=90.61 E-value=0.76 Score=48.40 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=34.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKL 231 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i 231 (1209)
...++.|.|.+|+|||++|.+++.....+ =..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCC--HHHHHHHH
Confidence 34689999999999999999998877543 235666766544 44554443
No 499
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=90.59 E-value=0.26 Score=44.39 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIA 201 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~ 201 (1209)
...++|+|++|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999986
No 500
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=90.58 E-value=0.85 Score=52.43 Aligned_cols=91 Identities=19% Similarity=0.268 Sum_probs=51.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCC------CCCCCh------H
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNF------DLNDSK------P 246 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~------~~~~~~------~ 246 (1209)
+...++|+|..|+|||||++.++..... ...++...--....+.++.+..+..-+... ..+... .
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~~---~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTDA---DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCC---CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 4468999999999999999888765432 223332222223345555554433322111 111111 1
Q ss_pred HHHHHHHHHHh-cCCeEEEEEeCCCcc
Q 038494 247 HRAKQLCQRLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 247 ~~~~~l~~~l~-~~k~~LlvlDdv~~~ 272 (1209)
...-.+-+++. +++.+|+++||+...
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 12223555554 478999999998764
Done!